ID A0A022PS38_ERYGU Unreviewed; 818 AA. AC A0A022PS38; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a001449mg {ECO:0000313|EMBL:EYU19157.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU19157.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU19157.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632305; EYU19157.1; -; Genomic_DNA. DR RefSeq; XP_012827521.1; XM_012972067.1. DR GeneID; 105948831; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 685 769 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 818 AA; 90545 MW; 6DF66F3292E81A5B CRC64; MKPTAALNQP SPEGGENNCL NSELWHACSG PLVSLPCIGS HVVYFPQGHS EQVAVSTNQE VDAQIPNHPT LPPQLICQLH NVTMHADIET DEVYAQLTLQ PLSPQEQKEV SFLPADLGCS SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA RDLHNNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLFLGIRRAN RPQTVMPSSV LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGV SDMDSVRWPN SHWRSVKVGW DESTAGEKQQ RVSLWEIEPL TTFPMYPSPF PLRLKRPWPP PTGFTSFAGM KSDDMALNSH LMWLRGGDGF GGGGGMQSLG QGMGVPPAWM QQQQQQPPFA AMQNNDVYQA MVDPTKQMLS SIMQHQHLMN QPSFLQSLPL SSYQPQAAPP PQQQSHATNL LHQQMLHQNS YNNNVLQIHQ QNQLSSTPIQ HAFDSQLSPN IKPVAGNINS PLHSLLGSVS QESGWPTKRV ALDPLLSGGM SPQANIAHDS VSLPPFPGRE CLIEQESTDP QNHFLFGVNI DSSSSLLMQN SNEIDNASMG FASSSYMHSD YSMNPAVTTS SGCIDESGFL LSSDNNAGNA NPPNRTFVKV YKSGSFGRSL DITKFSSYHE LRSELSKMFG LEGQLEGPLR SGWQLVFVDR ENDVLLLGDD PWQEFVNSVW CIKILSPQEI QDMGKRGLEL LNSVHNRQRS NGSCDSYGGQ QESRNISAGI PSVGTLHF // ID A0A022PX46_ERYGU Unreviewed; 590 AA. AC A0A022PX46; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a021154mg {ECO:0000313|EMBL:EYU18825.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU18825.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU18825.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632313; EYU18825.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 590 590 {ECO:0000313|EMBL:EYU18825.1}. SQ SEQUENCE 590 AA; 64758 MW; 852113DC57526651 CRC64; MTVMEKSLDS ELWHACAGGM VQMPPVNSKV FYFPQGHAEH TLTTVDFGAL PKIPPMILCR VIAVKFLADA ETDEVHAKIR LIPVGKNEHG FDDNGRDLGI AGSAASGEKP TSFAKTLTQS DANNGGGFSV PRFCAETIFP PLDYTADPPV QNVIAKDVHG ETWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RSENGDLCVG IRRAKRGGSG GGQDSSSSSG WNSGGAGNFG FSPFLKEDEI HRGVCNGNLR EKGKIRPESV VEATFMAANG QAFEVVYYPR ASTPEFCVKA SSVNSAMRVQ WFSGMRFKMP FETEDSSRIS WFMGTIANVQ VVDPLRWPNS PWRMLQVTWD EPDLLQNVKC VSPWLVEMVS NMPIHLSPFS PPRKKLRLPH HTDFQLDGQF QMPSFSGNPL GPSSPLCCLS DNILTAGIQG ARHAQIGVPF SDLHLSNNKL HMGLFPPSFM HLDSRPRIPH STNVGSGNEN ISCLLSMGNS SQKSDKPDGP KKPRFVLFGQ PILTEQQMSS ELSSKVGQGK NSLDLSSAQF LRKPGYHSSE IGLDTGHCKV FLDSEDVGRT LDLSFLGSYE // ID A0A022PZ15_ERYGU Unreviewed; 347 AA. AC A0A022PZ15; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU19445.1}; GN ORFNames=MIMGU_mgv1a009293mg {ECO:0000313|EMBL:EYU19445.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU19445.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU19445.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632290; EYU19445.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 38229 MW; 25746947656E7835 CRC64; MSGRSGFNYE ERSSSSSSSG FPLNYCSYGG GGGGGGAPPE FNNYGNGGEE EYSGGNHTAV AAMVEREHMF DKVVTPSDVG KLNRLVIPKQ YAEKYFPLDS SNNEKGLLLN FEDRNGKQWR FRYSYWNSSQ SYVMTKGWSR FVKDKKLDAG DTVTFQRGLG DFGKDRLFIN WRRRPDAPPP PVSSSSSIIF PHSHFSFHSA YSPSNYSNWN SSNPLFYQQS PNNYPGIVNG NPCPRPGSIM YLQRPGSFSP GGGWAAAAQP HTEAQRGGMV FDSVPVVQVA NNSNNNSNGS GAAKRMRLFG VTMDCPISEA TADSEIIIHP DFDSLNYSNN YHNNYKGKDS LSLDLDL // ID A0A022Q1X6_ERYGU Unreviewed; 832 AA. AC A0A022Q1X6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a001371mg {ECO:0000313|EMBL:EYU21819.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU21819.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU21819.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632223; EYU21819.1; -; Genomic_DNA. DR RefSeq; XP_012856487.1; XM_013001033.1. DR GeneID; 105975799; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 705 787 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 832 AA; 92564 MW; CF294A55AF8A2F0B CRC64; MAASEVSIKG YSDANDCNSG TDKANSGAGK VDTETALYTE LWRACAGPLV TVPRENELVF YFPQGHMEQV EASTNQSADQ QMPVYNLPPK ILCRVVNVNL KAEPDTDEVF AQVTLMPEPN QDENAAKKEP LPSPPPCFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN APSSVISSHS MHLGVLATAW HAIQTKTMFT VYYKPRTSPA EFIVSYDQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGTEDADSK RWPESKWRCL KVRWDETSTI PRPERVSPWK IEPALSPPAL NPLPVPRPKR PRSSVLPSSP DSSVLTREGP SKMTVDPSPA NGFQRVLQGQ ELSTLRGTFA ESNESEASEK PLLWNPSLDE DKIDALSASK RYMPDKWLPI GRPESSFTDL LSGFGSQISG SRDFCMPPGD EAVSKRQRQD QQHEAKFSFI GNNNNWSIMP SGLSLNLMDS SQGQGTTDVR YGGGFREYSL MPDSRGGDNQ QRNWLMPPPI SPYLQMGPAQ PRELMPKSAF MQQQPSHDSM KPKEGNCKLF GIPLRSSSNS ASLDQTLSQR TAMIERASHM QLGLHSHQSP AIESDQSKGS KMVDSPVATS EQDKPVTKVH SGSTRSCTKV HKQGTALGRS VDLAKFDNYD ELIAELDNLF EFNGELKAKT KNWLVVYTDD EDDMMLVGDD PWDEFCGMVR KILILTKEEV QRMSPGTFNS KGEEMSSVAE GLDAKEVKNL PATTSSSSPD NC // ID A0A022Q5K7_ERYGU Unreviewed; 773 AA. AC A0A022Q5K7; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a001371mg {ECO:0000313|EMBL:EYU21820.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU21820.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU21820.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632223; EYU21820.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 705 773 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 773 AA; 86217 MW; 44E4E82AB4B5D1CC CRC64; MAASEVSIKG YSDANDCNSG TDKANSGAGK VDTETALYTE LWRACAGPLV TVPRENELVF YFPQGHMEQV EASTNQSADQ QMPVYNLPPK ILCRVVNVNL KAEPDTDEVF AQVTLMPEPN QDENAAKKEP LPSPPPCFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN APSSVISSHS MHLGVLATAW HAIQTKTMFT VYYKPRTSPA EFIVSYDQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGTEDADSK RWPESKWRCL KVRWDETSTI PRPERVSPWK IEPALSPPAL NPLPVPRPKR PRSSVLPSSP DSSVLTREGP SKMTVDPSPA NGFQRVLQGQ ELSTLRGTFA ESNESEASEK PLLWNPSLDE DKIDALSASK RYMPDKWLPI GRPESSFTDL LSGFGSQISG SRDFCMPPGD EAVSKRQRQD QQHEAKFSFI GNNNNWSIMP SGLSLNLMDS SQGQGTTDVR YGGGFREYSL MPDSRGGDNQ QRNWLMPPPI SPYLQMGPAQ PRELMPKSAF MQQQPSHDSM KPKEGNCKLF GIPLRSSSNS ASLDQTLSQR TAMIERASHM QLGLHSHQSP AIESDQSKGS KMVDSPVATS EQDKPVTKVH SGSTRSCTKV HKQGTALGRS VDLAKFDNYD ELIAELDNLF EFNGELKAKT KNWLVVYTDD EDDMMLVGDD PWE // ID A0A022Q6M2_ERYGU Unreviewed; 221 AA. AC A0A022Q6M2; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU23606.1}; GN ORFNames=MIMGU_mgv11b015827mg {ECO:0000313|EMBL:EYU23606.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU23606.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU23606.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632161; EYU23606.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 87 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 87 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25297 MW; BCE14AB1CE998A4E CRC64; MVPGFQTHLN LPSAVCKKLK EKKSKRAILK SSIGKWKIDV CRNNEGLICF ENGWPQFVND HCLSIGDFVV FEHTGDFNFN VSVFDHTACE KELSIESKKE RRENNKGELD HNSQTPHFVL TMKPSFARRQ PRVNIPRVFV RSNSLGDKSS ATLRDPHKRA WPVKLVLEAN GRSRVLMCRG WHDFYVSNEL KDGDICRFEL NLGSLQTKNA VMDVQISRAL V // ID A0A022Q6Q9_ERYGU Unreviewed; 618 AA. AC A0A022Q6Q9; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a002989mg {ECO:0000313|EMBL:EYU23309.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU23309.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU23309.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632162; EYU23309.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 507 588 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 618 AA; 69183 MW; 8FAD406B868A7CFE CRC64; MEQLEASTNQ ELNQRIPMFN LPSKILCRVF DIKLQAEQDT DEVYAQITLM PEADQTEPRS PDSSPDEPPR PSVHSFCKVL TASDTSTHGG FSVLRKHANE CLPPLDMNQQ TPTQELIAKD LHGTEWHFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRGETGEL RVGVRRHARQ QSSMPSSVIS SQSMHLGVLA TASHAVLTQT LFVVYYKPRT SQFIIGLNKY LEALDHDFGV GVKFKKRFEG DDSPERRFSG TVIGVEDISP HWEDSKWRTF KVQWDEPASI QRPERVSPWE IEPFVASNPT NTIQPLTMKH KRPRPLVEIP VPETMTTSPL SPAWNLTQDS HKINRVSDGL RSNHSTNSLN KQTDAPSDGG QQFSLQINAS PNMAAAEETD ESKSASAWSV ITNISAPSSG KQGNSHNNEG TKSDTIASCR LFGFDLKRPS VVTLCDNNSP FKSVDVSNDL LCSGDSDQKS GVSKELKQDQ LQTLSKEVQN RQINSSRSRT KVQMQGVAVG RAVDLTTLNG YNDLINELEE MFEIKGELRP RNKWEIVFTD DEGDMMLVGD DPWPEFCNMV RRILICSSQD TKKMKASKLP LPTAECEATG LNLECIED // ID A0A022Q7N3_ERYGU Unreviewed; 522 AA. AC A0A022Q7N3; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a004523mg {ECO:0000313|EMBL:EYU23931.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU23931.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU23931.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632147; EYU23931.1; -; Genomic_DNA. DR RefSeq; XP_012853330.1; XM_012997876.1. DR GeneID; 105972895; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 522 AA; 57262 MW; C76B5E5E44CF714A CRC64; MSNFSSSSSA VATASEVDAS IWRAVAGACV QIPPPNSFVY YFPQGHLEHC SFSTAFINSF NFALGRPFIY CQVLSIRFFS NHLSDQVFVK ITLQPINTYG PCPVSNAGGD RENNQGDVVL FSKILTPSDA NNGGGFSVPR SCADMIFPPL DFAADPPVQN LTLKDTNNNA WEFRHIYRGT PRRHLLTTGW SKFVNAKRLV AGDSAVFMRK QSTDELYIGV RRAQRFGGIE GQNGGEALRA IENAVKGMAF EVLYCPTFGS PDFVVKAEKV CEATRTNWTA GMRVKMAVEA DDSSRLTWSS GTIAAVSCPN TGPWCGSPWG LLQMTWDEPE SMRNVNRVSP WQVEYLDPTL MLNPNFPPLK KLKLLSYSDM LLSAGEGEIP FPTAEFNSPL FNASIQGARL DPVYIPTTTT TNSQVSKEIP DKNEGEPERE TVSTVLSIGS SYSDKDNVSP PSQSSVASAT KLVRENSFQL FGQIIQMPQP GEDGACCSNA VSEENPVIDH QLPSPSARVQ QQQRFRRPSD KS // ID A0A022Q8C8_ERYGU Unreviewed; 83 AA. AC A0A022Q8C8; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU22795.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a019847mg {ECO:0000313|EMBL:EYU22795.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU22795.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU22795.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632191; EYU22795.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU22795.1}. SQ SEQUENCE 83 AA; 9761 MW; 970478D3943DF630 CRC64; RIPPAFLEHM EEKLSSVATL TTSRGRKWRV RLVEEEDSMV LKDGWEKFYE DNNLKITDVL LFTYHGNLRF NVGIYDQDGT IIN // ID A0A022Q8Q3_ERYGU Unreviewed; 202 AA. AC A0A022Q8Q3; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU23608.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv11b021892mg {ECO:0000313|EMBL:EYU23608.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU23608.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU23608.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632161; EYU23608.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 75 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 75 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU23608.1}. SQ SEQUENCE 202 AA; 23347 MW; F1E759230A1571A4 CRC64; LGEKRSLKEE KSKRAILKSR IGKWKIDVCR NGEGLISFEN GWPQFVRDHG LSIGDFVVFE HTGNFHFNVS VFDHTACEKE FPFEPKNERH ENNTRNPHFV LTMKPSFAHE KARVNIPAEF ARSNNLCDKS SVTLRDPRKR PWPEELGLQK IGPFRLVMWK GWHAFYVSNQ LKNGDICRFE LNPDSLQSAT ALMDVHISRA SV // ID A0A022QAR5_ERYGU Unreviewed; 241 AA. AC A0A022QAR5; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU23610.1}; GN ORFNames=MIMGU_mgv11b019660mg {ECO:0000313|EMBL:EYU23610.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU23610.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU23610.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632161; EYU23610.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 27909 MW; 75CB0FA889FE39CD CRC64; MEGEVAISGH FFNVMVRGFH NHLNLPSSFC EKLKDENSKR AILKSRIGKW KIDVCRNGEG IIRFENGWPQ FVRDHGLSIE DFVVFEHTGD FHFNISIFDH TACEKEFPVE SKKEHQENSK RESDKANVTF YHTRNPHFFL TMKPSFALKT PGVHIPVEFV RSVNLSQKSS ITLMDPQGRE WPVKLRLQTK SRLRARMYSG WHDFYVSNEL KNGDVCVFEL NSTSPRCTTA LFNVQISRAT V // ID A0A022QCK6_ERYGU Unreviewed; 725 AA. AC A0A022QCK6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a002020mg {ECO:0000313|EMBL:EYU25686.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU25686.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU25686.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631928; EYU25686.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 598 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 47 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 725 AA; 81155 MW; 86EEBE737F3F38B7 CRC64; MFEPQADVET DEVYAQMTLQ PLTPQEQKDA YLPVELGMGS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYAKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWTNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWYPG ASSFQDGSNE TMNGMAWLRG DEGGGFNPMN FQSAGTFPWM QQRFDPSALR NDPNQYQAML SAGLQNDHRD LLKNQLLQFQ QQQQPMHYLQ HSPVPSNILP LQTQMLSDNM QRTLIVPPPH QVENNPSEQQ QHTYQEAFLP SDIPSPSFTK SDFANSDSNK FSSHSGMQNM LGSGSGNLVN FSITGHHQHQ QHPIVNEQSA QQSWAAKFGQ SPVRGGTGKD AASMQEQDQA ALFGANMDSS GLLLPTTVSS MGADMMFSMP LGSSVGYQTT PLYGYVQDSS DNNMLHAAAQ VDQQTPNPTF VKVYKTGSVG RSLDIGRFNS YEELRNELGE MFGIQGLLED HHRQRSGWQL VFVDRENDVL LLGDDPWEAF VNNVWYIKIL SPEDVMKLGK EEAESLNISS TDQRINNADA QTLIPGLPSL GSLDY // ID A0A022QD11_ERYGU Unreviewed; 1025 AA. AC A0A022QD11; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a000668mg {ECO:0000313|EMBL:EYU26557.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU26557.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU26557.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631651; EYU26557.1; -; Genomic_DNA. DR RefSeq; XP_012850188.1; XM_012994734.1. DR GeneID; 105969966; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 913 997 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1025 AA; 113977 MW; 6A14A29271798D40 CRC64; MKTPNSGAGA PPANASAAEG EKKNINRELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA SMKKNADALI PNYPNLPPKL LCLLHNVTLH ADPETDEVYA QMTLQPVPSF DKDALLRSDL SMKSNKPQTE FFCKTLTASD TSTHGGFSVP RRSAEKIFPP LDFTMQPPAQ ELVARDLHDS MWTFRHIFRG QPKRHLLTTG WSLFVSGKRL IAGDSVLFIR DEKQQFLLGI RRANRQPTNM SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSNQISLG MRFRMMFETE ESGTRRYMGT ITGISDLDSV SWKNSQWRNL QVGWDESTAG EKRSRVSIWE IEPVTAPFFI CPTPPFFRPK RTRQPGMLDD DSSDMDNLFS RRMPWLGDEY GLKDSQSQQG LSLVQWMSMQ QNPSLANSMQ QPNYINGSEN SRPLGPPATQ IPHQYSPQFN PQRPNQPPQQ QLTDIDQPQR QNFVAAQNLP SNQVQSQVMQ QQQSFLNNHQ LQRNSNPPQN LPQQQQNLIP AVDQTSQQLH ISDNQIQLQL LQKLHQQQQS LLGQQTSQPT QLQDIPSNFS MSMKRSQMID PSQETSNMHH PSQQMPRNPS QNNLQFAHQF GTQSELSGHV GTTLNQTNNM LMNGAIGNNK GQSAVTDDVP SCSTSPSTNN CPNAVQPLKN VRNNRVATTM GDEIITHPSF TLLDSTTGLD PMSSGGNLVK DLHQKPGNKP PLNTTTTNNN NSTSRSQNQG FFAASQTYHL NSGGTHIDYL DSSSSATSVL SQNDVRMPQN NSMSFNSTQS MLFSDQRNND SFGATNMDNQ LGIPMMSEPL ITRNMVGPDK DFSTYENIPT DVQNEPSSSM VSQSFGVPDI TFNSIDDSNL NDGNFMNGGG GAWVPPTQIP RLRTYTKVYK RGAVGRSIDI SRYSCYDELK QDLARRFGIE GQLEDRQRVG WKLVYVDHEN DVLLVGDDPW EEFVSCVRCI KILSPQEVQQ MSLDGDFGNS VLPNQACSSS DNGLI // ID A0A022QDS0_ERYGU Unreviewed; 150 AA. AC A0A022QDS0; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU25408.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv11b0129431mg {ECO:0000313|EMBL:EYU25408.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU25408.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU25408.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI632002; EYU25408.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU25408.1}. SQ SEQUENCE 150 AA; 16754 MW; 06A89FB38A25C6DE CRC64; ITYSTRDLSN RVYASDEARD WAVKKAEETE STLGSDYPTL VRSMLPSHVS GGFWLGLPSH FCKKKLPRTD GVVSLVDEQG EEWPVNYLAR KNGLSGGWKK FSIDHGLVDG DALIFQLIRP TVLKVFITRV DGSGKTETNK TNKVEESIEH // ID A0A022QDW1_ERYGU Unreviewed; 118 AA. AC A0A022QDW1; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU26121.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a0207363mg {ECO:0000313|EMBL:EYU26121.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU26121.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU26121.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631751; EYU26121.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU26121.1}. FT NON_TER 118 118 {ECO:0000313|EMBL:EYU26121.1}. SQ SEQUENCE 118 AA; 13652 MW; 3772FC800BFD16BA CRC64; ERKRTRDCDI YEDEEAKRSV MQRAAELLAR LEKEYNLPSF VKCMLPSNVH LPKKFCTVNL PNEDTPVVLV DELGREHTTS YLLGRNGLSA GWRAFSMKHK LLKGDLLIFL LTQPCKFK // ID A0A022QDZ6_ERYGU Unreviewed; 200 AA. AC A0A022QDZ6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU26912.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a024196mg {ECO:0000313|EMBL:EYU26912.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU26912.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU26912.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631555; EYU26912.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 190 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 190 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 200 200 {ECO:0000313|EMBL:EYU26912.1}. SQ SEQUENCE 200 AA; 23330 MW; 0342BB8C9A6F1B7E CRC64; MKRKKEKEEE EHKKMEKRGR GRPKKIKIAP QSHNLIFNRL IDLFFSFQRI PPDFIEKFGR KKPAIVTLKT TSGISFRADM NKINKCWYLE KGWSEFVKEN SVEEGDFLTF SYAGKSVFNV KVFAKNGCIK TVDNLEEDEP SEPGLATLFN RVIFSRGWIK FARDNSLRDG NLCTFRKQLG QFVLQKKRAG LTMELALQRL // ID A0A022QET8_ERYGU Unreviewed; 125 AA. AC A0A022QET8; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU26124.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a0231451mg {ECO:0000313|EMBL:EYU26124.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU26124.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU26124.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631751; EYU26124.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU26124.1}. FT NON_TER 125 125 {ECO:0000313|EMBL:EYU26124.1}. SQ SEQUENCE 125 AA; 14486 MW; 12B42DF2320E7A3C CRC64; SERKRTRDCD IYEDEEAKRS VMQRAAELLA RLEKEYNLPS FVKCMLPSNV SQGFWLHLPK KFCKVNLPNE DTPVVLVDEL GREHTTSYLL GRNGLSAGWR AFSMKHKLLK GDLLIFLLTE PCKFK // ID A0A022QFU5_ERYGU Unreviewed; 327 AA. AC A0A022QFU5; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU26113.1}; GN ORFNames=MIMGU_mgv1a025604mg {ECO:0000313|EMBL:EYU26113.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU26113.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU26113.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631751; EYU26113.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37344 MW; 2F9D0BB75A7CA1F7 CRC64; MERAEEVQRN LPKKFPSFVK LMLRSHVTQG FWLGLPNKFC RDYLPKNDEK IVLVDANEKG YDTKYLAGRT GLSGGWRAFS IEHNLLEGDV VVFHLIEPCK FKLYIVRARR LTEVDGAMSL VNLDSHPEPI KACTDDAEIA DGIKFSESRL DFKYVNCFQD FSIHLDGGLV IDSEVPRHQK KKYYDLCRSQ NTFLHENLVR GLNTKLAAGI ISETVNIADA IRASTTPHEH LESWDKTLKA FEDLGMSVGP LRARIREMMS LYRDSRARIE LMRKERAEAE GVMKELSQRL SNVKTCVDKY DAIIDDLINA RNEGLGSKFE EIACAPW // ID A0A022QH07_ERYGU Unreviewed; 835 AA. AC A0A022QH07; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a001352mg {ECO:0000313|EMBL:EYU25825.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU25825.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU25825.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631864; EYU25825.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 707 800 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 107 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 835 AA; 93143 MW; 6BB4BC5C4FC1EAB0 CRC64; MNSELWHACA GPLVSLPPVA SLVVYFPQGH SEQVAASMQK QAECIPSYPN LPSKLICMLH SVTLHADGET DEVYAQMTLQ PVTKYDQEAL LVSDIGLKHN RQPTEFFCKT LTVSDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQEISAR DLHDQIWTFR HIYRGQPKRY LLTTGWSVFV SSKRLVAGDT VIFIRDEKSQ LRLGVRRANT QQPALSSSVI SSDSMHLGVL AAAAHAAANS TPFTIFYNPR ASPSEFVIPF AKYNKSMYAQ VSSGMRFRMM FETEESGVRR YMGTVTSVCD LDPVRWKNSQ WRNLQVGWDE STAGDRPCRV SIWETEPVVT PFYICPPPFF RPKFTTDDVS DMDNMFGLKD ASSSIFPGLN LVQLMNMQQN LGAHDHSKLL DFQSPGLLPP NLRNHQNQQI GQIDQESTRN NTQQTSAYPQ LACNVQMPQN ELSYNRSALP MNSTIRELSF KQFTESPSPS GIFQNRSQGQ QIIQFPELQS LSQRPIVGGP QASQLHRVSE QMQLLQKLHQ QQLPSPSINP VTDSQSKNDL QNQTGPYALL GNALIHPLPN LSHSKIDVRI KHELPKHKSA DMDAASSANS YHQQNSFPMN GFDGDVQSHG RNGFPFGATG IDGFAPDALL SRGGFDSAKD NNMQNIETDL SSGINSQSFG VPIMSFKPGC SNDIAPLNET CVQNGGLWSN QTQQRMRTYT KVQKRGSVGR TIDVTRYKGY EELRHDLARM FGIEGLLEDP QRNEWKLVYI DHENDILLVG DDPWEEFLSC VQSIKILSSS EVSQMSLDGD LGQIPVQTQA CSGTHSGNNA WKSHYDDNSA SSFNR // ID A0A022QH62_ERYGU Unreviewed; 278 AA. AC A0A022QH62; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU26914.1}; GN ORFNames=MIMGU_mgv1a011529mg {ECO:0000313|EMBL:EYU26914.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU26914.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU26914.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631555; EYU26914.1; -; Genomic_DNA. DR RefSeq; XP_012849992.1; XM_012994538.1. DR GeneID; 105969760; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 32237 MW; 0EBC93828ED1C48F CRC64; MGKRGRRKKI VSSEDAEFFK VFLPDLHSQQ LMIPPDFITY FSRTIRERVI LKDATGGKIW HVSVDQNRDG EFFLKNGWPS FVSHHRLTLG EFLVFKYDKC YSFLVKIYGI NGCKRDVFAA NHDIITARVK VEEENYAEEE INAAKQQTNS GKRARPPRYT ETEVSLENSS ECPFFISNLT RPSQYNLLIP GLLFKRHNVH TEPEMVMRDA KGNEWDVQIG TSKDGRVYIG KGFSQFRVDN KLVPPKDRCK FTFGAENSSR IIRVEVLRHV PPRKKSRC // ID A0A022QI39_ERYGU Unreviewed; 221 AA. AC A0A022QI39; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU26913.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a022509mg {ECO:0000313|EMBL:EYU26913.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU26913.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU26913.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631555; EYU26913.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 141 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 221 221 {ECO:0000313|EMBL:EYU26913.1}. SQ SEQUENCE 221 AA; 25555 MW; 1FD0EE3A7D3C404E CRC64; MDRRGRGRPK KIASDNFDQI PVKRGEDLPE FFKIYVPAIY SERLVNFQKK INFHRIPPDF IEKFGGNIPE TVTLKKTPGI SFQADINRID DDDDWFIEKG WPEFVKENSV EESDFLIFTY AGNAVFNVKV FSKNGCIKRH IPSEFWRTHL GADKRGLRMV TLKVKEKSWK VGITSKSFRA VFSKGWGKFV IDNSLRTGNS CMFMLIHDGH DLVFKNSGIK N // ID A0A022QKY5_ERYGU Unreviewed; 799 AA. AC A0A022QKY5; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU27908.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a019385mg {ECO:0000313|EMBL:EYU27908.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU27908.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU27908.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631456; EYU27908.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 274 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 624 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 274 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 799 799 {ECO:0000313|EMBL:EYU27908.1}. SQ SEQUENCE 799 AA; 89485 MW; 8B14754E0FD06436 CRC64; MSTKLCFNSK CKEPSDKWRR GWRRRTGEYA HLCDRCASVY EDEKFCETFH LKSSGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECLTC AKGCILTPNP AWPPPLHFLP SQPERMKDLS AKSWSPIVGS GPVPWRQAPS LFNGSDVPSN MKLRMPVEAD VSSGIDRYRI CERLSTASPE MKQGSSFERL VNGNMRHGLF EKPQNGNTVI FTFLLQGSIR NGMDLSGDTH MRNGKGRGDG RVRDQLLLRY RPQIVGEEFQ QISSDSKTVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF PLITQPEGLP LSILDVKGNE WMFQFRFWPN NNSRMYVLEG ITPCIQSMQL QAGDVVTFSR LEPEGKLVMG GRKALAIPSS DQLMDTFYAS LSMSAILSSS CNSIFFGLQG AEISIVGNNT FPPGDGSGRY NSVDVISVNG HEKGKLDQLF IKCSLEKSFC IINKCLVNQD TKIDREAWSE IDNCSIVAEK ILEDKPTIHN KRKNSNFSAK SKRLRIDDGD MIELKITWKE AQGLMRPPAK IVPSFVVVEG CEFEEFEEAE PVIGRPTIPG VDNFGEKIQW IQCEDCFKWR KVPADALLPS RWICSENEWD LDRSLCSSAE ELTKEQLEHM LPTMNKDSSI NEITELDGDL AVALEGLDAL ANLAIQGEAS SENRTKHPRH KPGCTCIVCI QPPSGKGSKH KQSCDCMVCI SLRRRCRTLM ESRDRKKMEK QAESSCHNLQ SQPKQLRGKV SKSGYLNETN ERKSEISPLK GQIDLNIQPE REEDSSPVSD SAPPKMKCS // ID A0A022QL99_ERYGU Unreviewed; 621 AA. AC A0A022QL99; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a002959mg {ECO:0000313|EMBL:EYU28023.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU28023.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU28023.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631456; EYU28023.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 621 AA; 68750 MW; 63F73851698DBE88 CRC64; MMCGLIDLNT VDNEDETASP SGSPTSSAAS GNFEFSVPPS SAAVCMELWH ACAGPLISLP KKGSAVVYFP QGHLEQLREH TAVAYDLPPH VFCRVVDVKL HADAASDEVY AQVSLVPDQQ IEQNWREGMI ETEVEDEDPE GMGKSMTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE LVAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG GDGELRLGIR RAAQVKSNAT ILHPNSNHFN ASSVVAVVNS ISMRSTFNIC YNPRAHSSEI IVPYHKFSKS LTHSFSCGMR FKIRFETEDS SERRCSGLII GVNEVDPARW PGSKWKCLLV RWDDMDVNRL NRVSPWEIEL SGSVSGSNSF VLPGNKRDGN EVSDFGEPLR FQKVLQGQEV FAFRTPYAGA EASRHHQSDM RCYPGLSMRH LHPDSFDTSV LGESFQFQNK VLQGQETISL YGRGPQANHH TPQVDNNAAN IINGVQVSNH GNSWSTLPQV FNSNPHRSLP FQFTPSANHG DHGMVPTGGK EVAFPHRPVP TQQFFRDNEN FVSMCKNSCR LFGFPLTEGK ITTMGMGENA TASSGSASAY GVRDRLLDIA L // ID A0A022QLX3_ERYGU Unreviewed; 524 AA. AC A0A022QLX3; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU28609.1}; GN ORFNames=MIMGU_mgv1a004496mg {ECO:0000313|EMBL:EYU28609.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU28609.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU28609.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631357; EYU28609.1; -; Genomic_DNA. DR RefSeq; XP_012847841.1; XM_012992387.1. DR RefSeq; XP_012847842.1; XM_012992388.1. DR GeneID; 105967773; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 456 520 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 456 520 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 524 AA; 59071 MW; 1E650EB7CC52385E CRC64; MVRRVVAPDS CGKNREAFRE KQKEVSPIVT RFIKIMIGKD HTEVLYLPRK FARKVVHLAN QETEIEDSNG EKWPVTFSYF DGSLSLHKGW NRFYQEHRME MGDFVVFNYK EGSHFVVQIY GRNALERINF NKVRTRENKR PRPDPPAFPQ EEEPLSGPDS RKRKTDPVEK KNADVADLTC MIDLTCMVDR DNVHYEREDR GFLFDLSNFE MKKEALDPNK IVGPVQMDVE INKLDTNEES SRAEMDVICE GDLGNGFGGE IAPRDAEFTV DATPIKGEEI ASCYAEFTVD ATPIKSEDVA PCHAQITADA TRVDVHSDKF LAESSDKSNS CKNAIDNIIS SFRDVLEKSE VFAGKEYASP FASSALKDLF GKCAIKKELV EVEDIPDRFL GVSCDAEKVT SAPLVVKPEP DLLYDAVPFG AIGQFSAVVK SLSFLELPIH IPSHPTRRES GYGKFVRVRD PMGRHWMILN PAIFSLKALT GNWTEFCLAN GIKLGDECRF NPKMMISTLT GLILFVINGE FLRG // ID A0A022QLZ5_ERYGU Unreviewed; 803 AA. AC A0A022QLZ5; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a001526mg {ECO:0000313|EMBL:EYU28308.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU28308.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU28308.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631414; EYU28308.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 803 AA; 89874 MW; 665F10BEEAEE17E9 CRC64; MKIPSNGFMA TAGEGEKKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKH TDGIPSYPNL PSKLICMLRN VTLHADGETD EVYAQMTLQP VSKYDQEALL VSDIGLKHNR QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELTARD LHDQTWTFRH IYRGQPKRHL LTTGWSIFVS NKRLIAGDAV LFIRDERSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV TAGMRFRMMF ETEESGVRRY MGTVTGVSDL DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVIAP FYMCPPPFFR PKFPKHSGFP DDGSDLENIF KRGMPWNITD DFGIKDASSS IFPGLSLVQW MSMQQNQQQS ALFPNMVSST PPQQNNTITS TNDPSKLLNF QSNNGNQQSQ QIVGQIQPSN ITWAQQQQQI LHSPTNTQHN LQQQQQQQQQ QQQQQIMLPQ SSNSLNSDHN SQQASMYSQV LQQQQQQQIL TGNAAQLQQT DPSANRATVP FTSLTQDMLY QQHIGQQPNL VQRPQQPQRP PQIQHASPPS LSEQQLQLQL LQKLQQQHQQ QQHQLISPQS NSLEARVNQN QQAQQQNSLP PPQRQSNGSC SSGPTPPVVQ SSSHFPVNQF PGPQKTPFLD RVRSIHTDGD APSCSNSPSK SNFQFLRNQT ESASLLDNLI YPHASSNLVQ ESHHHSKMDK AAPDNLKFKG GGGAADHLDA ASSGMQLRLC LRTVWMLRSR VFR // ID A0A022QMP3_ERYGU Unreviewed; 342 AA. AC A0A022QMP3; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU29942.1}; GN ORFNames=MIMGU_mgv1a009431mg {ECO:0000313|EMBL:EYU29942.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU29942.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU29942.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631110; EYU29942.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 167 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 37534 MW; B31E9063640F539D CRC64; MDLSFADEST TSETVSITPA VAASKSPPES LCRVGSGASA ITDAENGVEA ESRKLPSSRF KGVVPQPNGR WGAQIYEKHQ RRFRGRDAVT NFKPLSETQE DGVETAFLNT HSKAEIVDML RKHTYGDELE QSRRSYNSNG RRTAEDGPFG FSGRGGDRAA KAREQLFEKA VTPSDVGKLN RLVIPKQHAE RHFPLQSGST SKGVLLNFED AGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLRAGDIV SFQRSTAPDN QLYIDWKSRN INNGSNAAAA VVAVSGRAQP VVMVRLFGVN IFEAAPSDAA IDGYGSCSGK RMREMELLGL DCSKKQRVIG AL // ID A0A022QQ49_ERYGU Unreviewed; 522 AA. AC A0A022QQ49; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU28610.1}; GN ORFNames=MIMGU_mgv1a004496mg {ECO:0000313|EMBL:EYU28610.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU28610.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU28610.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631357; EYU28610.1; -; Genomic_DNA. DR RefSeq; XP_012847843.1; XM_012992389.1. DR GeneID; 105967773; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 454 518 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 454 518 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 522 AA; 58885 MW; E9B03016426F6A25 CRC64; MVRRVVAPDS CGKNREAFRE KQKEVSPIVT RFIKIMIGKD HTEVLYLPRK FARKVVHLAN QETEIEDSNG EKWPVTFSYF DGSLSLHKGW NRFYQEHRME MGDFVVFNYK EGSHFVVQIY GRNALERINF NKVRTRENKR PRPDPPAFPQ EEEPLSGPDS RKRKTDPVEK KNADVADLTC MIDLTCMVDR DNVHYEREDR GFLFDLSNFE MKKEALDPNK IVGPVQMDVE INKLDTNEES SRAEMDVICE GDLGNGFGGE IAPRDAEFTV DATPIKGEEI ASCYAEFTVD ATPIKSEDVA PCHAQITADA TRVDVHSDKF LAESSDKSNS CKNAIDNIIS SFRDVLEKSE VFAGKEYASP FASSALKDLF GKCAIKKELV EVEDIPDRFL GVSCEKVTSA PLVVKPEPDL LYDAVPFGAI GQFSAVVKSL SFLELPIHIP SHPTRRESGY GKFVRVRDPM GRHWMILNPA IFSLKALTGN WTEFCLANGI KLGDECRFNP KMMISTLTGL ILFVINGEFL RG // ID A0A022QSB2_ERYGU Unreviewed; 144 AA. AC A0A022QSB2; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU31617.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a021146mg {ECO:0000313|EMBL:EYU31617.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU31617.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU31617.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630927; EYU31617.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 144 144 {ECO:0000313|EMBL:EYU31617.1}. SQ SEQUENCE 144 AA; 16775 MW; 278127A545234049 CRC64; MKRKNAREEE HKKMEERGRG RPKKIKIAPQ SHNSDQITVN DDDDLPEFFK VHVSEIYSER MRIPPDFIEK FGRKKPAIVT LKTTSGISFR ADMKKINECW FLEKGWPEFV KENSVEEGDF LTFSYAGKSV FNVKVFAKNG CIKS // ID A0A022QSZ8_ERYGU Unreviewed; 275 AA. AC A0A022QSZ8; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU31867.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a018740mg {ECO:0000313|EMBL:EYU31867.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU31867.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU31867.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630881; EYU31867.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 275 275 {ECO:0000313|EMBL:EYU31867.1}. SQ SEQUENCE 275 AA; 31295 MW; 2E60209FCD53CE9E CRC64; MERNEAISYS NGEEVKVVMG SSSNSNSNSI AEGVRRRSSS RLQQNRNVEE PAELGVQRPD FFSTPGFVNI HRGPRMPRSR RATPLSLTFP ASHVPPPPPP PPPAAEIDLS KLNYLFKKQL KNSDVSALRR MVLPKRDAEI HLPVLESKEG VYISMLDMDG LHDWWFKYRY WPNNSSRMYV LESTGEFVYT HGLETDDYIL VYQNVEDGKY VIEARKKEEQ DAPRILLNEV VIREPTATDM ALSLIDEGME ALYEYNATFM DDTPLDYLGG PITLP // ID A0A022QU95_ERYGU Unreviewed; 629 AA. AC A0A022QU95; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a0027261mg {ECO:0000313|EMBL:EYU32262.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU32262.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU32262.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630880; EYU32262.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 514 606 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 86 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU32262.1}. SQ SEQUENCE 629 AA; 70545 MW; CDEA2F12849296BA CRC64; LWKACAGPLV DVLLEASTNQ ELDQQIPLFN LPSKILCRIV DIQLRAEQET DEVYAQITLH PEPDQTEPTS LDPSPPDPPK PNVRSFCKIL TASDTSTHGG FSVLRKHANE CLPPLDMSQQ TPTQDLVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRDDDNGE LRVGVRRLAR QQSTMPPSVI SSQSMHLGVL ATASHAITTQ TRFVVYYKPR TSQFIIGLNK YLEAMQQKFS VGKRFKMRFE GEDSPERRFT GTIVGVGELS SQWTGSTWRS LQVQWDEESA NIFRPERVSP WEIEPFAEDA SQSAMKIKRP RPLDLPRTGT TTTTASAASP LWYSKSTASV ERAHLTNDVQ NNENGQIFWH AKQKDLSSGL YYSTSYPGGF LPPLSHVENK NVLVKSPLST RASSFLEQGQ GVKNSETAPA PACRLFGFDL RNKNSDKITS SEKVVPLLSE EADMAKNVEI LNSSNNKERK QLNVPLEYSP NDMKGKLGFG SSSRTRIKVQ MQGIAVGRGV DLAAFGGYNE LINELEDMFG IKGELSPRNK WEVVYTDNEG DMMLVGDDPW PEFCKMARKI CIYSSEEVKK MSPKCKLHTP SLDDEGTNFS LESEQKPET // ID A0A022QWA6_ERYGU Unreviewed; 274 AA. AC A0A022QWA6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU30825.1}; GN ORFNames=MIMGU_mgv11b018073mg {ECO:0000313|EMBL:EYU30825.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU30825.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU30825.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI631018; EYU30825.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 209 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 209 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 30808 MW; E763338B53B59C7F CRC64; MGGGPFGFCV GVDVVCDFVR VISENRSVIS LRIFPIAPTV FSRTCLQKIP REFVKRYGNT LLRNCSVISL KVPTDSLWRV ELTRADGEIW LQNGWKEFVE FYSIKFGHLL VFEYQGSFQF RVLVFDMTAS EIEYPSQCAS NSGIGSKSSD SFVSSEQILT KTKGKGKRKI QDELGSDENE CDASVDIIGS TSGCDSNDSK GNLSDAMTRN LKLRVLNGKT WPVKCTIYKL SAKINSGWRN FVKDNRLKVG DVCIFQVINT TRLLLEVTIF RCRK // ID A0A022QWQ9_ERYGU Unreviewed; 309 AA. AC A0A022QWQ9; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU31778.1}; GN ORFNames=MIMGU_mgv1a023706mg {ECO:0000313|EMBL:EYU31778.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU31778.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU31778.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630894; EYU31778.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 174 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 174 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 34048 MW; 44B6EE210634CE0E CRC64; MEEKSILSGS EISDSNSSST TTTALPFFPG HDIINSGPAA PPSKFKGVVS QSNGNWGAQI YANHQRNWLG TFKSEVEAAM AYDSASITLR PSGGCVGGAT HRNFPWTSIT ACEPHFQRQF TTEAVLNMIK DGTYAARFSE YLRSHGRQVA AGRGRRCLSA SAHGAVGVRM RQLFQKELTP SDVSKLNRLV IPKKYAVKYF PRIMDKVEGQ NGKDGGIMDL ELTFVDRGMS PWKFRYCYWK SSQSFVFTRG WNRFAKDKGL KSMDKVIFYS YECGGKKMCL IDVAYNSDGV GAVVEGGVGP RELAEGPKI // ID A0A022QY63_ERYGU Unreviewed; 268 AA. AC A0A022QY63; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU33557.1}; GN ORFNames=MIMGU_mgv1a011866mg {ECO:0000313|EMBL:EYU33557.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU33557.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU33557.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630752; EYU33557.1; -; Genomic_DNA. DR RefSeq; XP_012841691.1; XM_012986237.1. DR GeneID; 105961978; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 268 AA; 30512 MW; D85CDEF5BB3DB720 CRC64; MASSSRMPSC FHCHSSSSST PDHFRNGWRL RSGHHAQLCP PCASLYEEGR FCEAFHKNDP GWRDCNSCGK MVHCGCIVSF NNHLILDCGG INCMECSRLN FLLERNRCIS LEPEIRAKES YQESFSQAPV DSQYCPRVTD AELQQVSRNP KATVTPLFEK VLSESDADLK FARLVVPKRC AEAFFPDISD LRGLRIKIQD IEGNEWQFHY RYWLDCGSRV YVLEGLRDHI VSKKWQPGDT VTFYRVEPGG KVVMGLRKTS AGPQIPRI // ID A0A022R4X4_ERYGU Unreviewed; 606 AA. AC A0A022R4X4; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a003127mg {ECO:0000313|EMBL:EYU35034.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU35034.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU35034.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630640; EYU35034.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 483 576 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 606 AA; 68019 MW; 40CD8EF9E894E0D8 CRC64; MEQLEASTHQ GLDQQLPSFS LPSKILCKVV HVQLRAESDT DEVYAQVTLI PEQDQSEITS PDPPLPEPQR CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMTQQ PPWQELVASD LHGNEWHFRH IFRGQPRRHL LTTGWSVFVS AKKLVAGDAF IFLRGENGEL RVGVRRLMRQ LNNMPSSVIS SHSMHLGVLA TASHAISTRT LFSVFYKPRT SRSEFIVSLN KYLEAQNHKL SVGMRFKMRF EGEEVPERRF SGTIVGVGNN SSSCWTDSEW RSLKVQWDEP SSILRPDRVS PWEIEPLVAA TPPNSQTQQR NKRARPPVLP SPMQDLSPLG MWKSPSESPS FRGLYQSPKL SSNTRASPMS YTDNLMPVSS NSAYQPNQIE TAAESFTPVS EKRQVNGCRL FGIELVDHST GDDTSAACQP GAAIEDSRIP LDSDYEQQSE PSNRNPSDVP SASYDPDKFC LRSPHEPHNR QIRSCTKVHM QGIAVGRAVD LTRFDCYEDL LKKFEEMFEI VGELSGPTKK WQVVYTDDED DMMMVGDDPW HEFCTMVKKI YIYTAEEAKK LSPKIKLPIS EVQSGKLNSD AAVITEEQSS TVGSGY // ID A0A022R6H1_ERYGU Unreviewed; 641 AA. AC A0A022R6H1; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a002753mg {ECO:0000313|EMBL:EYU34460.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU34460.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU34460.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630683; EYU34460.1; -; Genomic_DNA. DR RefSeq; XP_012840931.1; XM_012985477.1. DR GeneID; 105961239; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 554 632 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 641 AA; 70396 MW; D9A319022787FB6C CRC64; MITFMESKEK MKETEKCLDS QLWHACAGSM VQMPSVNSKV FYFPQGHSEH ASGIVDLRTC PKIPSYIPSR VTAVKFMADP ETDEVFAKIH LVPITGNEVV FDDHDAAAVG GGSENQEKPT SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSSDPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSTFVNHKKL VAGDSIVFMR AENGDLCVGI RRAKRGIGGS EAATGWNPAG GNPAVPYGGL SAFFREDEGK LSRNSNGDSI SSGRVKPEAV IEAATLGASG RPFEVVYYPR ASTPEFCVRA SLVKAALQIR WCSGMRFKMP FETEDSSRIS WFMGTISAVH VADPIRWPDS PWRLLQVAWD EPDLLQNVKR VSPWLVELVS SMPPIHHHNL SPFSPPRKKM RLPFDGQIPL PAFSGNPFGC LPNNNNNNTP AGMQGARHGL SLSDLFPAGF MPLNRVPLPS TTANNENVSC QLTMGNSNRG SKVSDNCKTA PFVLFGRPIL TEKQISLSGC SSDTRTGNSS SDGNEGKLGN NSDEGFQSEL DLETGHCKVF MESEDVGRTL DLSLLGSYEE LYEKLGSMFG VEISEIMNRV IYRDATGAVR QIGDESFSDF LKTARRLRIV ADTNKCKSVD F // ID A0A022R725_ERYGU Unreviewed; 112 AA. AC A0A022R725; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU36031.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a020505mg {ECO:0000313|EMBL:EYU36031.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU36031.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU36031.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630592; EYU36031.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 111 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU36031.1}. SQ SEQUENCE 112 AA; 12892 MW; CBBA76692ECA787F CRC64; ITKSLTKSDV NGSSRLLLPR KLVLDHILVY LDNVEVAAVY EEEGLEVTVL DVDTDTHHIL AFKLWSSSKS YVLAKNWSSD FVRRRGLSEN REIGIRWDRR PGSRSLEFTL FD // ID A0A022R972_ERYGU Unreviewed; 785 AA. AC A0A022R972; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU36907.1}; GN ORFNames=MIMGU_mgv1a001615mg {ECO:0000313|EMBL:EYU36907.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU36907.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU36907.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630583; EYU36907.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 114 131 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 317 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 513 563 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 317 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 785 AA; 86896 MW; E79B7F7AE2A27496 CRC64; MGSKNCMNQL CRATTSSEWK KGWILKSGGF ATLCYNCGSA YENSVFCETF HSDESGWREC RICGKLVHCG CIASKYLHEY MDFGGISCSS CSKRLEIHTP PSIQVRKIFT KSSYTVSVCV CVFIFLDFFF LQSRGDIPSS AFIPKSGGIR DARPIVIEKR IEEDRFSTER LLQLTKAIAV NEFSPESSKR APNPSPHSSS VFAKIDSKSQ AKPGVKDMFE SHAQPSRNFS LTVPPLTGEK ILEGGESSKD GGPKTRHVFS RPPKPTPLGA APQARVARPP ADGRGRNLLL PRYWPRITDQ ELQQLSGDLK STIVPLFEKI LSASDAGRIG RLVLPKACAE AYFPSINQSE GIPIKIQDIK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI FSRIDPGGQL VIGCRKTANN VDVQNGSRAG DDSGQQHLTL SEKRKAKNIK NKRLVMNNNE AMDLRITWDE AQELFRPSPS AERTVFVVED LEIEEFEEPP VFGKRTMFVC GPSGEQEQVV QCDSCSKWRR LPVDALLSAN WTCSDNIWDS TRCSCSAPED INSRDLDIVN KDYKKRRISS GEGEPSGLDA LANAAVLGGD NIGDMGGEYS VGATAAAATT TRHPRHRPGC TCIVCIQPPS GKGKHDPSCK CNVCLTVRRR FKTLMMRKKK RQSDREAELE LALESEDIVG EALVSMNRQR EENEGQNGNT VDLVEETSSK GHKLDLNCDP HREDEVLLEA SGMSLTALMN AASCPLDDMY LVPQAANVVE ENVADVEPEK IREDG // ID A0A022R9T6_ERYGU Unreviewed; 798 AA. AC A0A022R9T6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a001550mg {ECO:0000313|EMBL:EYU36774.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU36774.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU36774.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630592; EYU36774.1; -; Genomic_DNA. DR RefSeq; XP_012839167.1; XM_012983713.1. DR GeneID; 105959573; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 698 781 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 798 AA; 89539 MW; D9440F71188F68A0 CRC64; MGSVEEKQKA GANSNMFEGM KLLKEVHDHA GLKKPINSEL WHACAGPLVT LPQIGSLVYY FPQGHSEQVA VSTNRTATTQ IPNYPNLPSQ LLCQVHNVTL HADKETDETY AQLSLQAVNS EKDVFTIPDF GQKPSKHPTE FFCKTLTASD TSTHGGFSVP RRAAEKLFPQ LDYSMQPPTQ ELVVRDLHDN TWTFRHIYRG QPKRHLLTTG WSMFVGAKRL RAGDSVLFIR DEKSQLLLGV RRVNRQQTTL PSSVLSTDSM HIGIFAAAAH AAANKTPFTI FYNPRACPSV FIVPLAKYRK AVYGTQISIS MRFGFMFETE ESTKRRYMGT IIGISDLDPL RWPNSKWRSL QVEWDEPGCG DKQNRVSPWE VETPESLFIF PSLTATLKRP FHSSFIGAQT EWENLIHRPF PRFPDSPLQC SSVSNMWSDQ IKKMLTSVNI PAQEETHPQI MAGQSNTAYT KFEHVLGNDF TAANQNNGML HLQTSPFTTQ SSQFETHILQ TQQTEPTQIE SSSQVDFHSY RNLCSSSSPS GSCSMFKKSE QSSEAVFPML TSVGQEMWDP HFNNTAKCVS EATNNLPVLL PHQEMSEIQY NSCGLNMKDL SDENGGDIYS CLNIDSSNSG STVMDPSVSN TTILDDFCTL KNVDFPNHSD NYLVGNLCDV QSQITSASLA DSSNVDFDEN ILLHQGSFQT QQLPPRFRTY TKIQKAGSVG RSIDVSSFKD YKQLRCEIER MFGLEGLLID SCSEWKLVYV DFENDVLLVG DDPWEEFVGC VRCIRILSPS EVKQMGEEGM QILNSVLS // ID A0A022RB61_ERYGU Unreviewed; 681 AA. AC A0A022RB61; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a002381mg {ECO:0000313|EMBL:EYU36180.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU36180.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU36180.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630592; EYU36180.1; -; Genomic_DNA. DR RefSeq; XP_012838622.1; XM_012983168.1. DR RefSeq; XP_012838623.1; XM_012983169.1. DR RefSeq; XP_012838624.1; XM_012983170.1. DR RefSeq; XP_012838625.1; XM_012983171.1. DR GeneID; 105959130; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 568 649 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 74766 MW; 8C4170F8FAA25E21 CRC64; MKEIVEKSLD SELWHACAGC MVKMPPVNSK VFYFPQGHAE HSLASVDFGA LPMIPPMILC RVSSVKYLAD HETDEVYAKI GLIPVGNNER VSYDDEDGIF GRINKSESGE KAASFPKTLT QSDANNGGGF SVPRYCAETI FPPLDYTADP PVQNVTVRDV HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FMRAVNGDLC VGIRRARRGG GVSGNEYSSS VWNYGGGGNL GVVSGFLEDE NNKLMHRSGG VGKSREKGRV SPESVVEAAF LAASCQPFEV VYCPRASAME FCVKASSVNA AMRIHWCSGM KFKMPFETDD SSRVSWFMGT VASVQFVDPV RWPNSPWKLL QVTWDEPDLL QNVKCVSPWL VELASNMPAL HLSPFSPPRK KLCLPLHHPN LPLDGRFPLP SFSGNPLGPS SSLRCLPDNN ITLGIQGARH AQIGVPLTDL HFSNKQLQTG ILPPPSGNLP LLEYPRANVL DRNEDGNDNV SCLLSMGNSN KKKSDDETCG AKKTPLFVLF GQPIHTEKQM SYDRPGDAFS RVAFGQNASG GTKSLSTDFL CKVFLESEEV GHSVDLSALG SYKELYKKLE DMFRIDRSEI VGHLFYRDDA SGAAKQVGEE PFSEFVKATK TLRILMKPGS DDTERKLVTG LPTSELGRNS SNQTGALSIF A // ID A0A022RB72_ERYGU Unreviewed; 181 AA. AC A0A022RB72; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU36190.1}; GN ORFNames=MIMGU_mgv1a014702mg {ECO:0000313|EMBL:EYU36190.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU36190.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU36190.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630592; EYU36190.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 181 AA; 20432 MW; 54DD76768C6019F4 CRC64; MHMDEDASDE DDVEQLRTTS KTINAKSKSK SKSSTNSTRG NTSGNGNIPC ERIFKKKDLP DCYGADIFRS GLASVPKNPY FVSRSRVARR KNELYIPKDV IVDYGLKISG TMFLVDERGN KWKSKMIKWK DGRLWCTKGW RNLCNVNGIN LDDTCICEFV REEGCEEYSL LVTVVGGGLD K // ID A0A022RBI9_ERYGU Unreviewed; 386 AA. AC A0A022RBI9; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU37692.1}; GN ORFNames=MIMGU_mgv1a008064mg {ECO:0000313|EMBL:EYU37692.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU37692.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU37692.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630513; EYU37692.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 386 AA; 43434 MW; 62BA276EA6FA7745 CRC64; MNEVMVLLLP SNEITISTTA DPDGCLNVNS SALDQAKGIQ ANSFEQFPSF LKQLLKSHLS GKFYLGLPKK FCDAHLPSHD GSIILVDEND QEYNTKYSVR KNRLSGGWRG FSIEHKLLEG DALVFHLIEP CKFRVYIVRA GKITENEGAI GLQTYDFQNI KPISAVKMED QMEENACTGK TARQVYLNSL EVVDSHHETK KARLTPDSEI HMHHSANSID QFKDISGFEN FKIQSGGLIL DSEIPKNIRA KYYNLCCSQR ITKLAVVMIS ETTNISEAVR SADVSTSLHH LECWEKTLKA FEDLGMAVGF IRNRLHKLLE ISREAQSNNE SKMTVKTQAD HVSGNLETSS LNVEALIGSL EAEIESLRWK NEKLGFEFRE LARAPW // ID A0A022RBQ6_ERYGU Unreviewed; 339 AA. AC A0A022RBQ6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU37691.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a020275mg {ECO:0000313|EMBL:EYU37691.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU37691.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU37691.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630513; EYU37691.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU37691.1}. SQ SEQUENCE 339 AA; 38704 MW; B72D73636E822218 CRC64; ERKRTRDCDI YEDEEAKRSV MQRAAELLAR LAKEYNLPSF VKCMLPSNVS QGFWLHLPKK FCTVNLPNED TPVVLVDELG REHTTSYLLG RNGLSAGWRA FSMKHKLLKG DLLIFLLTEP CKFKVHIVRV NDIEVLFAAL CLMDLRFSCE GNDSGCHSAN SIDQFKDISG FEDFKIQLGG LILDSEMPKN IIAKYYNLCC SQRMFLHDHL INGLSTKLAV VMISETTNIS EAVRSADVST SLHHLECWEK TLKAFEDLGM AVGFIRNRLH KLLEILREAQ SNNESKMTMR AQADHVSGNL ETTLNVEALI GSLEAEIETL RWKNEKFEFE FRELARAPW // ID A0A022RCB4_ERYGU Unreviewed; 184 AA. AC A0A022RCB4; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU37689.1}; GN ORFNames=MIMGU_mgv1a014607mg {ECO:0000313|EMBL:EYU37689.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU37689.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU37689.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630513; EYU37689.1; -; Genomic_DNA. DR RefSeq; XP_012836953.1; XM_012981499.1. DR GeneID; 105957567; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 86 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 184 AA; 20949 MW; 2300424334B66FEC CRC64; MKKVKPRVPK QPLDLSAVRR SNRVADLPPR TYKENLSVVP MGRARSSGRR RDLSNRVYAS DEDRAYAIER AEELESRLDK DNMPVFVKPM LQSHVTGGFW LGLPVHFCNK HLPKSDEMMD LVDEEGEVFP TKYLALKRGL SGGWRGFAID HELVDGDALV FQLTDRTTFK VYIIRVNDSG ESSD // ID A0A022RF32_ERYGU Unreviewed; 621 AA. AC A0A022RF32; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a002956mg {ECO:0000313|EMBL:EYU38831.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU38831.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU38831.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630476; EYU38831.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 521 604 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 621 AA; 69267 MW; 1768BF4C2AA77B64 CRC64; MGSVEEKMKP GCLVSGGGGG HNLLEGMKLL KEMHDIRVKK QINSELWHAC GGPLVNLPQV GSLVYYFPQG HSEQVAVSTN RAATAQIPNY PNLSPQLLCQ VHNITLHADK ETDEIYAQMS LQPVNTEKDV IPVPDFGLKP SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPQLDYS MQPPTQELVV RDLHENTWTF RHIYRGQPKR HLLTTGWSMF VGAKRLRAGD SVLFIRDEKS QLMLGVRRVN RQLATLPSSV LSADSMHIGI LAAAAHAAAS RSPFTIFYNP RACPADFVIP FAKYQKSVYG TQLSIGMRFG MMFETEESSK RRYMGTITGM SDLDPLRWPN SKWRSLQVEW DEPGCGDKRN RVSPWEIETP ESLFVFPSLT GNNFKRPFNS AFLGNILPLL DFFFGCLNLD CSNSGSTVID PSSVSSMVLE DFCPSKNPDF QSPSDYINVG NYCSNQDVQS QITSASLADS RNFSVQEYAD NSGGASSSNV EFDEGKILQQ SSWQQVTPRF RTYTKIQKAG SVGRSIDVSS FKNYDELRLE IERMFGLEGL LNDLGSGWKL VYVDFENDVL LVGDDPWEEF VGCVKCIRIL SPSEVKQMGE EGMELLNSVV C // ID A0A022RFL3_ERYGU Unreviewed; 109 AA. AC A0A022RFL3; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU37690.1}; GN ORFNames=MIMGU_mgv1a016740mg {ECO:0000313|EMBL:EYU37690.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU37690.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU37690.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630513; EYU37690.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 109 AA; 12535 MW; 34B35DB9010E3725 CRC64; MQRAAELLAR LEQEYNLPSF VKCMLPSNVS QGFWLHLPKK FCTVNLPNED TPVVLVDELG REHTTSYLLG RNGLSAGWRA FSMKHKLLKG DLLIFLLTEP CKFKVIHFF // ID A0A022RFQ0_ERYGU Unreviewed; 187 AA. AC A0A022RFQ0; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU37730.1}; GN ORFNames=MIMGU_mgv1a014508mg {ECO:0000313|EMBL:EYU37730.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU37730.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU37730.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630513; EYU37730.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 111 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 111 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 187 AA; 21442 MW; 24048CC17890DB7B CRC64; MLGKNEIGSP DRRPCFFKIM LPPNFTRLRI PHDFNEQLSD INSNQATLAS RTCGNWEVEL VKDDKGDIYF IRGWPEFVKH HSLVPLDILV FKYNGDSSFD VVIFDKNGTQ IPKKFATAHL PHSKQRITLR NSDGVSSSAS IIIFSRKYLA ITGGWKEFSD FNSIKKGDIC TFELIDQTTM QVHIFRK // ID A0A022RH64_ERYGU Unreviewed; 487 AA. AC A0A022RH64; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU39334.1}; GN ORFNames=MIMGU_mgv1a005357mg {ECO:0000313|EMBL:EYU39334.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU39334.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU39334.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630450; EYU39334.1; -; Genomic_DNA. DR RefSeq; XP_012835160.1; XM_012979706.1. DR GeneID; 105955899; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 6 33 {ECO:0000256|SAM:Coils}. FT COILED 430 457 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 487 AA; 55196 MW; 3AD43EA475C67F66 CRC64; MKLKIVHQSQ ENHAAEEEQI KNETMEIDQI ETHKIRVLVE DDENPSPINP PPISAYDPML VSGKRKRKPK EMIDEAPSVF RRRRKFSSSS SSSKYKDATL DSGGTSMSMG GPHSKSPTMI RAEEVQSSLG NDHPSFLKFL VRSHVGSCFW MGLPVPFCKL HLPFKDTIVT LENENGEEFP IKYIAHKTGL SAGWRKFVGG NKLLEGDVLI FHLIETCRLK VYVIRANDLT EVDGALSLLI LDSQTKQSDA EMAIDAQIKK QRRQKSLPLT IVQMNNEAQL ETSGNESEEV ASEVLEGSKS SSRAPNFNDV SCFEEFHVIV NGISIDSEIP EHIRRKYYDL CSTKNVFLHD CLLPGLYVKL AGGIIVETVN IADAIRGCKL TTSKEEFEVW EKSLRSFELL GLNVGFLRVH LSRLFDIAFD SEGALETRRY WAARMDRSRA EDEIENLEAK ISELKEFSAK CDRDIENLKT RAERYEVMFR EEVSASW // ID A0A022RHG8_ERYGU Unreviewed; 564 AA. AC A0A022RHG8; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a020932mg {ECO:0000313|EMBL:EYU39842.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU39842.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU39842.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630443; EYU39842.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 146 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 564 AA; 62361 MW; 85BE8829A1441B43 CRC64; MINVMHSVVN QLEKSLNPQL WHACAGGMAQ TPPLNSGVYY FPQGHAEHAA GNLDSGEFSK IPPLVLCRVL SVKYLADAES DEVFAKIKLV PLGANDEFDS NFDKSGVNEV SISKSNSFAK TLTQSDANNG GGFSVPRHIY RGTPRRHLLT TGWSNFVSRK RLVAGDSVVF LRAENGELCI GVRRAKTGLG VGAEVAAYGW NSGGRDFLGV GERGESVIEA VDLASCGRPF EVVYYPRAST PEFVVRASVV RDAMRVRWCG GMRFKMAFET EDSSRISWFM GTISSVRVDD PIRWPNSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSNIP AIHLSPLSVP RKRPRLPELS GYPVSMPTFF SNNPLSPLCC FSDNNISYSG IQGARHARIL LPSSNFHYNK PQPFDFKPLV DYTSPSQKTE NFEESNEAKK SPLFLLFGQP ILTEEQIIAS NLSDENRENV GDVSNGSVSG VIQNFPLEAS SDGEFSRFEE QKLELGVETT HCKVFTEPED VGRTLDLSIL TSYEELYGKS ESVFCMERSE TSNNVVCSDS SGTTKHTGDE CRVD // ID A0A022RHZ4_ERYGU Unreviewed; 546 AA. AC A0A022RHZ4; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a021021mg {ECO:0000313|EMBL:EYU39604.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU39604.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU39604.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630443; EYU39604.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 546 AA; 60763 MW; FB1859C8CB1AD4FF CRC64; MINVMHSANK PMNQVEKILD PQLWQACAGG MAQIPPPNSK VYYFPQGHSE HANRHVDFNG FSRIPPIIPC RVSAIKYLAD SDSDEVYAKI RLVPLSMSDY DANDDNNDDN ENGFLGFDKC DEKEKTTNSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LVKDVHGEVW KFRHIYRGTP RRHLLTTGWS NFVNRKKVVA GDSIVFLRAE NGDLCVGIRR AKRGVNGGQE VVCGWSSSNG ASASSLYRGF SDFLSGNRNN VMCDNSKGIG NCELPGVKER GNVSGESVLE AVNLAVNGRP FEVVYYPLAS TPEFVVRVRA VRAAMRVRWC SGMRFKMAFE TEDSSRISWF MGTISSVQVD DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PPGGNLPPFS PPRKRPRFPL PSDFLLPTFF NNPLSPISPL CFLPENIPTG VQGARHARFE SQPSDLVHFK KQIQPFDFKL LDDDDDALSR TKPILSDGNQ ENTGNVSNGS GSGVVQNFPP EASEDECKKL DLGLET // ID A0A022RID0_ERYGU Unreviewed; 303 AA. AC A0A022RID0; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU38665.1}; GN ORFNames=MIMGU_mgv1a021192mg {ECO:0000313|EMBL:EYU38665.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU38665.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU38665.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630480; EYU38665.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 33275 MW; 77B796DDBD405167 CRC64; MSINQYYPSD WWSYPIPNSA AAAPLHLNHG TSAAAFCSQS AAFCYSHNNN ETEEESPEET NKPLFEKSLT PSDVGKLNRL VIPKQHAEKY LPLNNGGGSG GGDTGEKGLV LSFEDEVGKS WRFRYSYWNS SQSYVLTRGW SRFVKEKRLD AGDAVLFLRH PEDVGRLFIG WRRRNSGGGG GGGQEISSVA SASANVRRTP PAGGGGGGWS RLVYNNPAGH PYLISQYYQD YCSSSLSYHY QPPNDCPHAA DADRKETAAA SGNLKRVRLF GVNLDQWESS SSEPLSSPEG SSMARTHYHP YHD // ID A0A022RK98_ERYGU Unreviewed; 209 AA. AC A0A022RK98; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU40862.1}; GN ORFNames=MIMGU_mgv1a013817mg {ECO:0000313|EMBL:EYU40862.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU40862.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU40862.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630371; EYU40862.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 209 AA; 23200 MW; 79FA39603E66CDAB CRC64; MLRKHTYADE LEQSRRNFGK NGGGAARGGG AFGFCGGAAE KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSGST SKGILLNLED RGAKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV SFHRSTGPDK QLYIDWKPRN NVNAPLPAAA IAVVPGQMVR LFGVNIFESP RNSGGGKRMV EMELLGLHTS KKQRVVNAL // ID A0A022RME0_ERYGU Unreviewed; 332 AA. AC A0A022RME0; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU40140.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a026121mg {ECO:0000313|EMBL:EYU40140.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU40140.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU40140.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630424; EYU40140.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 48 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 48 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU40140.1}. SQ SEQUENCE 332 AA; 39207 MW; 2EE5FA88E6141ED1 CRC64; KVGQHRDKFY LRDGWEKFVE DNSIEGGDVI FFEYFGNGVF ETKIHDSTAC EKKRLGARKS SFKQQKKVPN DTYALEWENT RDEVAEEIPT NDYAPHRKDD YSSDEREKAT RTRRVSDLYR GEAFQSGFVQ PKPHFARKIS SKRKRQLRLP SAFTLSVQGA LPERVFFQDR YENTWQVKVE KVRSKLYFGD GWTDFVEDNG IRVGHIVFFE YSGNGLFKTK IHDSTACKKK RFGACKAEKH RKKALYIPKE VVRDNILDLP EEIVMIDPHG RTWTAKGKIW KDGRRYYTRG WRRLCQRNFV EDEDLCICEF IETGQSLIMD VSFVREEAYN YY // ID A0A022RQ98_ERYGU Unreviewed; 452 AA. AC A0A022RQ98; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42667.1}; GN ORFNames=MIMGU_mgv1a006218mg {ECO:0000313|EMBL:EYU42667.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42667.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42667.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630281; EYU42667.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 452 AA; 51218 MW; D8BF84CCA6B6F1A9 CRC64; MAISSKNDSN RDPHSSSSSS KSKLKQKNTW EFKKQLVEKR LIDLDNMHKN NSDSVSMDKT IVRHQSEEKS TTELHSSAMQ RADEIQKNLP KQFPSFVKLM SRSHVTQGFW LGVPRQFCDD HLPMKDVTIV LIGENEKEFD TRYLAAKSGL SGGWKFFAAG HKLIEGDAVV FQLIEPCKFK VYIVRDRSLS EADGAISLLN LDSNPDQIKP LKVEEPEENA DIKETTTTTS DKYPDPLVED NNHPKKKKMK KIIRNTENSN AEMSDRIKFS ESPLDFKSVK CFQDFSIHFN GLILDSEIPS HLKTKYYELC KSQNTFLHEN LLQGLNSKLV AGMISETVNI ADAVRACKAS TAHEHLESWD RTLKAFEDLG MAVGPVRGRI NELVSLYSEP RTRIIESMRN QRDEAQVVIR GLSERLSIVR SCVEKLDADI DALEAKNESL GLVFEEIASA PW // ID A0A022RQA3_ERYGU Unreviewed; 394 AA. AC A0A022RQA3; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42672.1}; GN ORFNames=MIMGU_mgv1a024973mg {ECO:0000313|EMBL:EYU42672.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42672.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42672.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630281; EYU42672.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 127 148 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 329 363 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 394 AA; 45792 MW; CD25245D6BA0125E CRC64; MDRAHAIQAN LSPNFPNFLK TLRKSYVTRK FWLILPKPFC HANIPKKDGW MVLLDENDRG YKTEYLVGSH TLSSGWKSFS IAHKLREGDV LVFQLIEPCK FKWQIKLNIF LELDAIKIIC WSIRNPIFSY IDQFSLIVFL FCFIEIYIAK ATTTLPNQDH FHREPVEAVK PEPEEENTDN TGTRRDKYLE YRSKKKEKII PISKPNGIRS SECSLVSFKD IKGFKDFSIY VDARILDSEI PTHCKAKYYE LCKSQNMFLH ENIVQGLNGK LAVEMISELI KIADSIRAAD SKTGTDRMEG WDKTLKAFED LGMVVGFLRV RIRKLIRVFR EYGADIELMR IERDEAEEER IALNVKLWRV ENRIGQIDDE IDALRSVKNE GVGPVFKKIA CAPW // ID A0A022RQD6_ERYGU Unreviewed; 159 AA. AC A0A022RQD6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42269.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a018767mg {ECO:0000313|EMBL:EYU42269.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42269.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42269.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630297; EYU42269.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU42269.1}. SQ SEQUENCE 159 AA; 17763 MW; 8152C7B97E5991F4 CRC64; ACTTEHAPGN EEIRRAEFDS SPEAAKADED EICYLSGKPY FDIIIGKTHL NRPRGLYPPI SMTQRLPRAT IPAVLRHGGK TWNMSYCGDA ARPRFDYKWK AFVADNHLKV GDGCVFELME SDSRNAVFKV MIVRGEIPPE LQALIDSRGK SEAVPIVID // ID A0A022RR67_ERYGU Unreviewed; 167 AA. AC A0A022RR67; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42268.1}; GN ORFNames=MIMGU_mgv1a015135mg {ECO:0000313|EMBL:EYU42268.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42268.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42268.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630297; EYU42268.1; -; Genomic_DNA. DR RefSeq; XP_012831419.1; XM_012975965.1. DR GeneID; 105952418; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 167 AA; 18644 MW; 229706F1ADC5DA30 CRC64; MLDNSKQDAV QKKTQAPEHE EIGSTRFDSI SEAAKADEDE ICYLSGKPYF DLVLSKSHLL PNGLFVPVTI SSTLPRTTVP VVLRHGGRTW NMSYVGNMVR RRFDSQWKTF VADNNLKVGD GCVFELMESS GTNLIFKVMI VRGDIPPQLQ ELIDSRGKSD EAPIVLD // ID A0A022RRG9_ERYGU Unreviewed; 346 AA. AC A0A022RRG9; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42669.1}; GN ORFNames=MIMGU_mgv1a006218mg {ECO:0000313|EMBL:EYU42669.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42669.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42669.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630281; EYU42669.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 39026 MW; 3A7DA769DF323870 CRC64; MHKNNGVPRQ FCDDHLPMKD VTIVLIGENE KEFDTRYLAA KSGLSGGWKF FAAGHKLIEG DAVVFQLIEP CKFKVYIVRD RSLSEADGAI SLLNLDSNPD QIKPLKVEEP EENADIKETT TTTSDKYPDP LVEDNNHPKK KKMKKIIRNT ENSNAEMSDR IKFSESPLDF KSVKCFQDFS IHFNGLILDS EIPSHLKTKY YELCKSQNTF LHENLLQGLN SKLVAGMISE TVNIADAVRA CKASTAHEHL ESWDRTLKAF EDLGMAVGPV RGRINELVSL YSEPRTRIIE SMRNQRDEAQ VVIRGLSERL SIVRSCVEKL DADIDALEAK NESLGLVFEE IASAPW // ID A0A022RRP6_ERYGU Unreviewed; 402 AA. AC A0A022RRP6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42671.1}; GN ORFNames=MIMGU_mgv1a007604mg {ECO:0000313|EMBL:EYU42671.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42671.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42671.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630281; EYU42671.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 338 365 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 402 AA; 46384 MW; A059ABCF191D26E4 CRC64; MRTAWELKKK PAEQRLMDLT NQKKKNGDSV STDRPYKRSF GLRSSAMNRA QTIQANLSPH FPSFAKPMQI SHVARKFELT LPKLFCDAHL PKKDGMIVFL DENDQSYNIN YVVRVRDRFD LTGGWRSFST AHALLEGDVL VFQLIEPCKF KVYIVKDTRL TKVDGPNRDR FHRKPIKAAK TEPEEENSDP IERTRNKYLE RISQKTKTDR TTPIRKPARD EYASYSDSFG TERSLEYSLL DGLTIDSEIP TDCKEKYYGL CKSRNMFLHE NLVQGLNGKL AVEMISETIR IADAIRAVDS KTAPGLMEGW DKTLKGFEEI GMVVGFLRVR IRKLIRVFRE YRAGIELKRI ERDEAEEERI ALNVKLWRVE NWIGEIDAEI DALSAKNESM GPVLKEIACA PW // ID A0A022RS87_ERYGU Unreviewed; 822 AA. AC A0A022RS87; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MIMGU_mgv1a001422mg {ECO:0000313|EMBL:EYU42851.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42851.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42851.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630276; EYU42851.1; -; Genomic_DNA. DR RefSeq; XP_012830909.1; XM_012975455.1. DR GeneID; 105951965; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 725 809 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 822 AA; 91275 MW; 29A2E73438E135D4 CRC64; MMLSSSSTSS GANAQQEEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS TNKEIDAAIP NYPGLQPQLI CQLHNVTMHA DIETDEVYAQ MTLQPLTPQE QKDICLLPAE LGSPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQTPPCQ ELIAKDLHGN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NENNQLFLGI RRANRPQAVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FFNPRASPSE FVIPLAKYAK SAYHTRVSVG MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSPFSLRMKR PWPSGLPSFP GLKDGGDMSM NSPITWLRGG MGDQGMMQQL NFQGIGGGSH WMQPRLDPSM FCMQPDIYQV MALQEAGSLL DPSKITNSPL MQFQQNLPNV SAPSLMQNYQ SVPQQSFLQN IPENQYNQYN HQQQFQDQQQ NRKPMGPTSD SPQFTTPIQN LTDFMGSNIN NIASSNNNSL LNSHIMNLHG PNSSSSKRVA LLDPQIPSKV SSTSSHFGVP HLEELVTPHS KGSELSAVLP PFLGRDFSDF QSVTNHSHNN NNNSNNNNNN NDNNGLYSSG NVMNNNNNNN NNGNGSEQLS MAYATSAFVN GAGGDFPINS DMTSSSCVDE SGYLQSSENV DPTSRAFVKV HKSGSFGRSL DISKFSSYDE LRGELSRMFG LEGFLEDSQR SGWQLVFVDR ENDILLLGDD PWQEFVNSVW YIKILSPLEV QQMGKEEGRD FS // ID A0A022RSC4_ERYGU Unreviewed; 392 AA. AC A0A022RSC4; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42668.1}; GN ORFNames=MIMGU_mgv1a006218mg {ECO:0000313|EMBL:EYU42668.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42668.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42668.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630281; EYU42668.1; -; Genomic_DNA. DR RefSeq; XP_012831049.1; XM_012975595.1. DR GeneID; 105952088; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 392 AA; 44315 MW; 237F62CD40543B58 CRC64; MAISSKNDSN RDPHSSSSSS KSKLKQKNTW EFKKQLVEKR LIDLDNMHKN NGVPRQFCDD HLPMKDVTIV LIGENEKEFD TRYLAAKSGL SGGWKFFAAG HKLIEGDAVV FQLIEPCKFK VYIVRDRSLS EADGAISLLN LDSNPDQIKP LKVEEPEENA DIKETTTTTS DKYPDPLVED NNHPKKKKMK KIIRNTENSN AEMSDRIKFS ESPLDFKSVK CFQDFSIHFN GLILDSEIPS HLKTKYYELC KSQNTFLHEN LLQGLNSKLV AGMISETVNI ADAVRACKAS TAHEHLESWD RTLKAFEDLG MAVGPVRGRI NELVSLYSEP RTRIIESMRN QRDEAQVVIR GLSERLSIVR SCVEKLDADI DALEAKNESL GLVFEEIASA PW // ID A0A022RSY6_ERYGU Unreviewed; 819 AA. AC A0A022RSY6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42020.1}; GN ORFNames=MIMGU_mgv1a001444mg {ECO:0000313|EMBL:EYU42020.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42020.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42020.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630319; EYU42020.1; -; Genomic_DNA. DR RefSeq; XP_012832273.1; XM_012976819.1. DR GeneID; 105953185; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 270 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 517 566 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 270 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 819 AA; 91127 MW; 3D75908C094E9E2A CRC64; MECMNGLCAS SNSIEWENGW PLQSGGFATL CLNCGSAYKQ FVFCETFHSE ETGWRECTSC GKRLHCGCIA STSLLELLET GGVSCKACII KNSKIPSTPK EKHQACALST ENFIDQNLET MGPAQPGDGA ENDGQEQRLP PSLNNALQES NSAKRVNESL VQTNLSISLS ASSNSGVFAE ERQLSTAVSS FQQGCGPRHL LPRLLPNSIL SAGLGLETNS SNNISQLRVA RPPVEGRVKN QLLPRYWPRI TDQELKQISG DSNSTIIPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGLPLRIQ DVRGKEWVFQ FRFWPNNNSR MYVLEGVTPC IHSMQLQAGD TVTFSRMDPE GKLLMGFRKA SNNVSVQKDS HYSMNNGAFQ GERFFGNAEN NLPIMSGYSG LLHSLKGSKN SSMPTLSKHV YAGDNPLSES SLLPERKRRN IGPKSKRLLI DGHDSLEIRI SWEEVQDMLR APPSVEPSIV SVEDHEFEEF EEPPVFAKRS IFVVRLSGEH EQWTQCDDCF KWRKMPIDIL LPPKWTCQDN IDQTRCSCSA QDELCSSEIE NLLKMNEDLT KRRFQTSLNK PMYENKSQDQ ETPTINAGGE TSQPVTSSIA TTTKHPRHRP GCSCIVCIQP PSGKGKHKPT CTCNVCMTVK RRFKTLMMRK KKRQSDREAE IIMAQRNNQF PTSASAKDEA EVDHSTNPNI NNTQVSLQFV PSDDARRSET DILSTRNSEI FKGGLDLNSC PVREITAPPR VSMTSLLLEA SLPLDTYLKQ NGLTSLLTEQ QAVSSPRVEN MEEHSNDLSE KDQIEKDPL // ID A0A022RTK1_ERYGU Unreviewed; 176 AA. AC A0A022RTK1; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42270.1}; GN ORFNames=MIMGU_mgv1a014840mg {ECO:0000313|EMBL:EYU42270.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42270.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42270.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630297; EYU42270.1; -; Genomic_DNA. DR RefSeq; XP_012831373.1; XM_012975919.1. DR GeneID; 105952376; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 58 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 58 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 176 AA; 19387 MW; 38A841691D961A4C CRC64; MVTPSKRVAQ LAAVKMEACT TENAPENEEI RHTRFGSNSE PAKLDEDEIR YLSGKPYFDL VLSKSHISHT FGLLFPASMI RELPRATIPA VLKNGGKIWN MSYCGGGVRP KLDSGWKTFV ADNNLKIGDG CVFELMESTG TNLVFKVMIV RGDIPTELQE LIDSRGKSGD TPIVLD // ID A0A022RUQ1_ERYGU Unreviewed; 336 AA. AC A0A022RUQ1; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU42670.1}; GN ORFNames=MIMGU_mgv1a009633mg {ECO:0000313|EMBL:EYU42670.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU42670.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU42670.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630281; EYU42670.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 286 320 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 336 AA; 38000 MW; 8EB792EB5C115BCD CRC64; MDLINQQKIS CVDESSSAMD RAQAVATNLY PNFLRRLLKS HVTGEFRLNL PKPFCDAHLP KQSCVLVLSD ENDREYNTKY AVGKNRLTSG WKSFSIAHKL LEGDILVFQL IEPCKFKVYI VKATRLTQVD GATTTALPNQ NFHPNEIANG KRSSEYSLIN VKDVKGFKDF TIYVDGISID SEMPIQCKAK YYELCKSRNM FLHENLVQGL NGKLAAEMIS ETIKIADAIR AVDSKTAPAR MEGWDKTLKA FEDLGMVVGF LRVRIHELLS ISRENQASVR LKRVERDGAE EEMRALDVKL SRVKTRIEKI DSEIDALAAE NEGLDPVFKE IAHCPW // ID A0A022RV02_ERYGU Unreviewed; 216 AA. AC A0A022RV02; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU44337.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a021057mg {ECO:0000313|EMBL:EYU44337.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU44337.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU44337.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630214; EYU44337.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 115 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 115 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU44337.1}. SQ SEQUENCE 216 AA; 25112 MW; A43CBDDCEF45929C CRC64; KVPLAFGQKH KNILTENMRL RIGSGETWDI KVEQADDGHY YFTKGWKDFA LDLKLERSDF VGFTFDDNST FDVTAWGSDG CGKEYSFPHP YVVVDDDSSE DELLEQQEEE TNVINPKFVI VLQRSHISRV SICKNYAEEA GLIGKKRVFL EYQPGGYRSS VALDFRSKNM RLNKNGFRLD FAKGWRDFRK ATGMHFYRTY SFEFIPWKGV IQVKEV // ID A0A022RWB6_ERYGU Unreviewed; 228 AA. AC A0A022RWB6; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU44339.1}; GN ORFNames=MIMGU_mgv1a026884mg {ECO:0000313|EMBL:EYU44339.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU44339.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU44339.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630214; EYU44339.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 26700 MW; BB9CFB6AEF84713D CRC64; MAMKKKNRPS FFAVLVQDYI NKLQVPPAFV RKCGFNWPEN AQLRTSCGEI WDVKIEEFNE CKYFTVGWRK FVEDAELRRE EFLVFWFNIN SSIFDVSIFG IGGLERGISV QQNISITEDE LDDDDDDDDD DDDDDDEDDD DDDGDDALAP AGLLRENAVI LEYPPYKRRW TVTLHRYTNV KKFRIDMSRG WSGFRRANDL VCGKTYSFQY IKDKNVVEVK PVEVKPFR // ID A0A022RX66_ERYGU Unreviewed; 124 AA. AC A0A022RX66; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU44338.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a026278mg {ECO:0000313|EMBL:EYU44338.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU44338.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU44338.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630214; EYU44338.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 88 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 88 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU44338.1}. SQ SEQUENCE 124 AA; 14261 MW; 16C9E7BF1B1724F7 CRC64; RLCRNFARKY REILPENAEL RICSGETWDV ELTQIDGDHY FTAGWSKFAG DLELRPTDFL VFTFGGGSTF DVSVYGNDCC EKKPLLDLTA GWPEFRKINR LSVGKTYLFE FIPSKQVIQV KPIK // ID A0A022RXC9_ERYGU Unreviewed; 483 AA. AC A0A022RXC9; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU44388.1}; GN ORFNames=MIMGU_mgv1a005456mg {ECO:0000313|EMBL:EYU44388.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU44388.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU44388.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630214; EYU44388.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 433 474 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 483 AA; 55622 MW; CC0761D6C1455617 CRC64; MKLKILHQSP ESQRLMKGEN LEIDEMEEEP QIRVSPEMEN SPHQELPLVN AFHPMLVSGK RKRKPKELID DFVPIIRVRK KNSSSSKSKD VTPPGHAAAL MRKVDCTFGR SSNAQSNSPT MVRAEEVQSS LSNDQPNFLK FLVRSHVGSC FWMGLPVPFC KVYLPSEDTM VILENENGEE FPVKYIANKT GLSAGWRKFV AGSKLLEGDV LIFQLIGPCR FKVYIIRAND LTEVDEASMD AQIKKRRHRK SLPLKIVHKK KRNESSFGSH PEKQPEEHSG NDSDEVASEV LECTKFNESS FNFKDVKTFE DFHIVVNGVC IDSELPEQIR RKYYELCSSK NAYLHERLLP GLYTKLACGI IDQTIKIADC IKSCNLTTPR KDFEVWEKSL RSFELLGLNV GFLRARLNHL LTLAFDSEDA FEIRRYWEVQ NDKSLTEDEI KKLEIKIDEL KEACEKYDRE IEDLKRKAES YEVKFLEEVN APW // ID A0A022RY59_ERYGU Unreviewed; 270 AA. AC A0A022RY59; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU45442.1}; GN ORFNames=MIMGU_mgv11b014940mg {ECO:0000313|EMBL:EYU45442.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU45442.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU45442.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630185; EYU45442.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 29 {ECO:0000256|SAM:SignalP}. FT CHAIN 30 270 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5001507982. FT DOMAIN 68 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 223 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 223 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 31321 MW; B86CED2F795B9345 CRC64; MAAMNPRTGR NFVTRSVLFL SHLLVFYNPQ PLLDSPPSAT QLDYILPPAA DLNFHKGTTM ERKSTTKPSF FQILIHNDFT RSLKVPLAFG QKHKNILTEN MRLRIGSGET WDVKVEQADD GHYYFTKGWE DFARDLKLER SDFIGFTFDD NSTFDVTAWG SDGCGKEYSF PHPYVVVDDD SSEDELLEQQ EEETNVINPK FAIVLQQHMQ ELCGGGWFDR SPNMRLNKNG FRLDFAKGWR DFRKATGMRF YRTYLFEFIP WKGVIQVKEV // ID A0A022RZN2_ERYGU Unreviewed; 216 AA. AC A0A022RZN2; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU45441.1}; DE Flags: Fragment; GN ORFNames=MIMGU_mgv1a026245mg {ECO:0000313|EMBL:EYU45441.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU45441.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU45441.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630185; EYU45441.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 115 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 115 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EYU45441.1}. SQ SEQUENCE 216 AA; 25069 MW; 11B4217218199385 CRC64; KVPLAFGQKH KNILTENMRL RIGSGETWDV KVEQADDGHY YFTKGWEDFA RDLKLERSDF IGFTFDDNST FDVTAWGSDG CGKEYSFPHP YVVVDDDSSE DELLEQQEEE TNVINPKFAI VLQRSHISRV SICKNYAEEA GLIGKKRVVL EYQPGGYCSS VVLDFRSPNM RLNKNGFRLD FAKGWRDFRK ATGMRFYRTY LFEFIPWKGV IQVKEV // ID A0A022S123_ERYGU Unreviewed; 292 AA. AC A0A022S123; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU46039.1}; GN ORFNames=MIMGU_mgv1a011106mg {ECO:0000313|EMBL:EYU46039.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU46039.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU46039.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630171; EYU46039.1; -; Genomic_DNA. DR RefSeq; XP_012843083.1; XM_012987629.1. DR GeneID; 105963207; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 33436 MW; DD885E6C44DD9854 CRC64; MANESSATAY EEARKQRLLE NQKRFEDLGL LKLSKNLSNL KKPEKSQNRH VRSKAADNFL IEPRRSSRAR NPVPSYRDDV DVGLGGLPSS RKRSKLNSSW ATYLARPLEE VKTASYEERV RAHKYAEKLQ SNLQDGNPSF VKSMVRSHVY SCFWLGLPGK FCKDHLSKST VDMVLENEEG EEYDAKFISE RTGLSGGWRA FALDHKLDDG DALLFELIEP TRFKVYIVRA FDAEKEHEKE NEKEPVLEHG SDGEGTLNKE TKNRKKKDNN LTKPKKEESS EISGTRRSSR NK // ID A0A022S1G9_ERYGU Unreviewed; 540 AA. AC A0A022S1G9; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU45075.1}; GN ORFNames=MIMGU_mgv1a004183mg {ECO:0000313|EMBL:EYU45075.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU45075.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU45075.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630200; EYU45075.1; -; Genomic_DNA. DR RefSeq; XP_012845475.1; XM_012990021.1. DR GeneID; 105965473; -. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 233 329 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 427 523 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 233 329 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 427 523 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 540 AA; 60869 MW; 7E1B8DB2204FCE0C CRC64; MWHMRRPHFL LGFDSSLSSE RLNIPYNFVK HLEGKTPGTA LLVGPSGNDW YVNLIHTDNG LFLNDGWADF VRDHFLEHGD AMVFRYDGEL HFTVQIFDQS MCEKEAAFTV ESSQDLSKYD VNVVRKRGRE RSALLDSIIE GVPKRMRTQS GSFRNVHENN LTVVDQNHNW MQQVDCGSNL KSNVTVAVPL TIVPHENTDP SIGNQTTKLD MLLLSASEAE RMAGSFTSSY PNFTKVMKKF NISGSYTLNL PYQFATEHLP KCKLKIVLRN LKGETWTVNS IPTTKVQTSH TFCGGWLAFV RDNNIDIGDI CIFELVRKVE FNVRILRVGK EGTDGHNRGT ANGGRDNSCT TSKKLSRRKS KKKSDNTSVK APPLCTQSTN CIVESEIHKR FGSLDKQGSH AKGCMSMKSV PEEKMAAQYF VSSFPHFVRV MKKFNISGSF TLKIPYQFSV EHLPASRTEI LLRNLNGKCW TVNSIPTTKV QALHTFCGGW MAFVRDNDIQ MGDICIFELV GKCEMRVHIC GIGKKGLNYQ NGTTRNLPMP // ID A0A022S207_ERYGU Unreviewed; 693 AA. AC A0A022S207; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU46359.1}; GN ORFNames=MIMGU_mgv1a025237mg {ECO:0000313|EMBL:EYU46359.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU46359.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU46359.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630171; EYU46359.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 555 657 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 555 657 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 693 AA; 76621 MW; 1F83899302BA4483 CRC64; MAAAAAVGGG GVVEEAAGFE AMEEDHQDLW LDRDQDDLLD VNDASIFYDD FPPLPDFPCM SSSSSSSSTP AASRPTAVTS TSSSATSSSP AASWPMMKSD GDEFKDCCEA VKMEPAALSS TASMDIPPPP PPADHDGLCD VDCINVMENF GYMDLIDSNE IWDPSSIFQS ENPQDFLADD QHAAAQAAAP PPPPQNMDCQ DQENDSFSSF LEGNSELAFI FFEWLKQNRD YISAEDMRNI KLKRSTIENA SKRLGSNKEG KKQLLKLILE WVENYQLQKK PPPITAEGGG GPQSPNPNPN FNYTPLPQDP NTCFPAPTWM PPPPQPDQVS SMMAAPPFSG QHMAGYSGDP YSNQIPMVPM HHQVVNGIAY QHSPEYAQSW PISPYPMPPP PPHHQFSPYP DSNGHVMTHH HHQHHHHHQQ TVYGNPYQVY DPNGERLMRL GSSATKEARK KRMARQKKMY SHHHRHSSNS GQNQSQLNDA DVVGDGGDEG DNWYWSGGGG GGDASSPTNA NAPPGDDSHT PSGDRPSKQP QTNQKQGSDK RQQGWKSEKN LKFLLQKVLK QSDVGNLGRI VLPKKEAESH LPELETRDGM TIAMEDIGSS RVWNMRYRFW PNNKSRMYLL ENTGDFVRVN GLQEGDFIVI YSDTKCGKYM IRGVKVRQPG AKMEGKKPAR RNMRNMSFGG NSSSLMPIKQ AAR // ID A0A022S400_ERYGU Unreviewed; 773 AA. AC A0A022S400; DT 11-JUN-2014, integrated into UniProtKB/TrEMBL. DT 11-JUN-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYU46020.1}; GN ORFNames=MIMGU_mgv1a027022mg {ECO:0000313|EMBL:EYU46020.1}; OS Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe. OX NCBI_TaxID=4155 {ECO:0000313|EMBL:EYU46020.1, ECO:0000313|Proteomes:UP000030748}; RN [1] {ECO:0000313|EMBL:EYU46020.1, ECO:0000313|Proteomes:UP000030748} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24225854; DOI=10.1073/pnas.1319032110; RA Hellsten U., Wright K.M., Jenkins J., Shu S., Yuan Y., Wessler S.R., RA Schmutz J., Willis J.H., Rokhsar D.S.; RT "Fine-scale variation in meiotic recombination in Mimulus inferred RT from population shotgun sequencing."; RL Proc. Natl. Acad. Sci. U.S.A. 110:19478-19482(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI630171; EYU46020.1; -; Genomic_DNA. DR Proteomes; UP000030748; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030748}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030748}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 484 534 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 286 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 773 AA; 85383 MW; 19CA14485A616E5D CRC64; MGSQNCMNEA CRGTTSSEWK KGWTLKSGGF ATLCYTCGSA YENSIFCDKF HAEESGWREC KICGKRVHCG CIVSRFLHEY MDYGGVGCMS CIPSDISNGT FLTNGIRDTR PIIVENRIDD DKFSTERLLQ LTKAIGTSDF SSAFQQFKQE ESMLNKTRQT NKRLLNLTQE CSPPKDANES ILPRPSLNFS LTPPILPYSG GVVDGIELSK NSPQQGGLKA RHILPKPPKP SPIELNKGSF SQARVARPPA EGRGRNQLLP RYWPKITDQE LQQLSGDLKS TIVPLFEKIL SASDAGRIGR LVLPKACAEA YFPPINQSEG IPINIQDIKG KEWLFQFRFW PNNNSRMYVL EGVTPCIQNM QVQAGDTVIF SRIDPGGQLV IGCRKATNIF DLQNGGRTSD DSLQRHMSTT LSEKKKARNI KNKRLLMHNE DAMELRVTWE EAQELLRPTP NAEPTFVMIE DHLFEEFQEP PIFGKRTIFT SRISGEQEQL AQCDSCLKWR RLPVHALLSG KWTCSENTWD SKRCSCYAPE DINPRDLESC ISAYKDSKKR KVSDKASNKE GEPSGLDALA TAAVLGDNNN NIVGAESSSV GAAATTRHPR HRPGCSCIVC IQPPSGKGKH EPTCKCNVCL TVKRRFKTLM MRKKKRQSDR EAELALQLKA ASAAVEEEDD KAGPAKNTGG GLEREDAEER ETAELDLNCD PHREEEALLA EAAGISLTTL MNAVTSLPLD MAYVGPPNGA VSTEEIDATV AAVDGDLAEG NNRKDGPGGF NPI // ID A0A058ZRB6_EUCGR Unreviewed; 223 AA. AC A0A058ZRB6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW44327.1}; GN ORFNames=EUGRSUZ_L02216 {ECO:0000313|EMBL:KCW44327.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW44327.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK199439; KCW44327.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 165 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 165 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 223 AA; 25697 MW; F3D8F23193516E4F CRC64; MVGGRHFESQ TPHFFKIILS DALQNGRLGI PKKFVRKYGS NLSDLVFLQV PSGQAWEVEL VRRTDGVWLR RGWPDFVKHY AIKHGHFLVF RYEGGSAFRV VIFDKSASEI KYPIITELPK REENEGDTGG EKSEALKRAA SFQSSNPFFL TLMQPSLICH SLRFWLARYK FGIYGRKTQV KINSGWKLFV QDNNLKVGDI CIFELLDSDL IVLKVSIFRY SID // ID A0A058ZRC7_EUCGR Unreviewed; 207 AA. AC A0A058ZRC7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW44353.1}; GN ORFNames=EUGRSUZ_L02178 {ECO:0000313|EMBL:KCW44353.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW44353.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK199400; KCW44353.1; -; Genomic_DNA. DR RefSeq; XP_010041424.1; XM_010043122.1. DR GeneID; 104430389; -. DR KEGG; egr:104430389; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 207 AA; 23710 MW; EDA993F46369D959 CRC64; MESQTNMFSG DSAVREEAHE VLQASLFLSV LKHTGEGVSR GDKPARSKDV QVSSSSCGPL RKPRRSNPPI VRRVNALIDS IGRCRGPFEK QVKASDLKDQ QNRLLLRKED VREFILPLLE EDDNPEQGVE VTTYNTLGET FPMQFKMWSG KVYVLMRNWK EFARENKLKE SDTLNIWAFR NVQMKRLCFV ISRTPKAPGQ IRMEKGP // ID A0A058ZRJ6_EUCGR Unreviewed; 161 AA. AC A0A058ZRJ6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW44408.1}; GN ORFNames=EUGRSUZ_L02104 {ECO:0000313|EMBL:KCW44408.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW44408.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK199340; KCW44408.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 155 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 161 AA; 18321 MW; AECCF9433BC929C7 CRC64; MASLTNAESL IAEKKAKCKR TQKGKKEASG CDAEEVSTEL TLVFDPYKVK KRLTQSDLGH LSRLLIGRDL VKSHFLRWMD EETVRQVESG KGADVIVRDM DTGSEHRLVF VFWASSGSYA LKGGWIKEFV KRRALEVGDE VGIYWDPSER KFHFSLLHMV D // ID A0A058ZSG9_EUCGR Unreviewed; 337 AA. AC A0A058ZSG9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW44763.1}; GN ORFNames=EUGRSUZ_L01673 {ECO:0000313|EMBL:KCW44763.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW44763.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK199061; KCW44763.1; -; Genomic_DNA. DR RefSeq; XP_010040940.1; XM_010042638.2. DR GeneID; 104429840; -. DR KEGG; egr:104429840; -. DR KO; K09287; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 119 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 195 301 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 119 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 195 301 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 37571 MW; C4B3D6A6232B4B06 CRC64; MDGNIICIDE LSSTSDSNVI PLPSKSWQPP TPPQSLCRLG SGTSVTLDCE GGIKAESRKL NPSKYKGVVP QPNGRWGAQI YEKHQRVWIG TFSEEDEAAM AYDIAAKCFR GQAAVTNFNQ RSNTEDYDLE AAFLISHSKA EIVDMLREHA YYEELEQCKR KYVNANGDGK RVSMTEVLGD PSGPGRAAAA CHLLFQKEVM QSDVGNLNRF VIPKQHAEKH FPLHNRSSPT TSKGTLLTFI DSGGKVWRFR YLYWNSSRSY VLTRGWSRFV KEKSLRAGDI ISFHRSAGPE KQLHINYMRR SGLSQARPVH PVQKVRLFGV DIFQVSGTGG GVNCGGR // ID A0A058ZT26_EUCGR Unreviewed; 213 AA. AC A0A058ZT26; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW44938.1}; GN ORFNames=EUGRSUZ_L01473 {ECO:0000313|EMBL:KCW44938.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW44938.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198981; KCW44938.1; -; Genomic_DNA. DR RefSeq; XP_010040774.1; XM_010042472.2. DR GeneID; 104429618; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 213 AA; 23515 MW; 4AA9E8326ED00B05 CRC64; MAAPRGDARG RNQLLPRYWP RITDQELQQI SGDSNSVITP LFEKMLSASD AGKIGRLVLP RKCAEAYFPP ISQPEGLPLK VQDAKGSEWI FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDIVTFSRLE PEGKLVMGFR KASTAPSSDQ EKHSQAPEKK GHDGEDASIS EQRPEQQLEE SSEQSDAHLQ GNMGKGGAEA EAGEEDVEEA NTI // ID A0A058ZTH9_EUCGR Unreviewed; 147 AA. AC A0A058ZTH9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW44666.1}; GN ORFNames=EUGRSUZ_L01802 {ECO:0000313|EMBL:KCW44666.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW44666.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK199129; KCW44666.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 146 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 147 AA; 16926 MW; A8C0CBA32C837E42 CRC64; MAKYKRTQRG KKEASGCDPE EVSTELTLLF DPYKIKKRLT QSDLGHLSRL LIGRDFVKSH FLRWMNEETV RQVESSKGAD VIVRDMDTCS EHRLVFVFWA SSGSYVLKGG WIKEFVKRRG LAVGDEVGIY WEPSASKFHF SLLHKAN // ID A0A058ZUD8_EUCGR Unreviewed; 142 AA. AC A0A058ZUD8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW44665.1}; GN ORFNames=EUGRSUZ_L01801 {ECO:0000313|EMBL:KCW44665.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW44665.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK199129; KCW44665.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 141 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 142 AA; 16348 MW; 7D656E1A86185F70 CRC64; MKGSEVLLLQ DWWWLVISTE LTLLFDPYKI KKRLTQSDLG HLSRLLIGRD FVKSHFLRWM SEETVRQVES GKGADVIVRD VDTCSENGLV FVFWASSGSY VLKGGWIKEF AKRRGLAVGD EIGLYWDPIT SKFHFSLLHK AN // ID A0A058ZWL1_EUCGR Unreviewed; 440 AA. AC A0A058ZWL1; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW45834.1}; GN ORFNames=EUGRSUZ_L00348 {ECO:0000313|EMBL:KCW45834.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW45834.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198772; KCW45834.1; -; Genomic_DNA. DR RefSeq; XP_010039648.1; XM_010041346.2. DR GeneID; 104428344; -. DR KEGG; egr:104428344; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 440 AA; 47869 MW; 60417A8078693A09 CRC64; MDFREAFVEF EEAQVVKGKQ NPFSYSSSSS SPSSSTSHHQ HTRGLFPVGN VSNGQWDTPM GSWLAHGFDR EADGRSKPEL MDVSPPRDDE HSRPAAPAPP IEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSTN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV SFQRGVGEFG KDRLFIDWRR RPDAPDPPPM AAFQLPGHFS FHHRGSATAV PWGPLLLRPG AAAGAMHMSA RDHSQASHLG PYRNSYGGGS GCSYGYGCGN VVSLNACPNS SSVYYQLRSS IGAGIAPRQV SAGMVQVPQG AGGGGAGGNE PVVFDSVPVV HGKVAAKRLR LFGVNMECPI SESDDECDIL SSTSISHASI SSQTHQMSSS SSQQPPLQLR LYNGTPLPTI QAEFLNKGKA SVSSSLDLDI // ID A0A059A1B4_EUCGR Unreviewed; 707 AA. AC A0A059A1B4; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_K01240 {ECO:0000313|EMBL:KCW47456.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW47456.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198763; KCW47456.1; -; Genomic_DNA. DR RefSeq; XP_010035948.1; XM_010037646.2. DR GeneID; 104425067; -. DR KEGG; egr:104425067; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 620 701 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 707 AA; 77911 MW; 85C1A2E7EEB2E272 CRC64; MITFIDSKEK LKEVEKTLDS QLWHACAGGM VQMPPVNSKV FYFPQGHAEH SSGPVDFRSC PRIPAYIPCR VSAIRFMADP ETDEVFAKMR LVPLTSSEPD FGDDGIGGLQ GSDGQDKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSVDPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFMRA ENGDLCVGIR RAKRGIGSGP ESSSGWNPVG GNCAVPYGGF SAFLTEDENK LITNGHGNCM SGNGSLMGKK RVTPEAVVEA ASLAANGHPF EVVYYPRAST PEFCVKSSLV KTAMQIRWCP GMRFKMAFET EDSSRISWFM GTISSVHVAD PTCWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSSMP AIHLSPFSPP RKKLRLPHHP DFPLDGHFPM PSFSGDLLGP SSPFGCLPNS HSAAGMQGAR HAYYSQSLPD LHLSKQPSSL FPAGFPLLDH SIRSMRTSNG PRMHKSSSDD DISTLLTMTN YGKVFKKLEE VKKPPQLVLF GKPILTEQQI SLSNSATTTT TTASPVRTSS EEKIDKTGSF PDGPDSARQQ SGQREQQSSC EQLRVHEDKH QQEMEACSEI GHCKVFIASE DVGRTLDLSL LASYDELCRK LTDMFGVENS QSLARHVLYR DDKGAEKRIG DEPYSDFIRT ARRLTILTNS SSNGVGS // ID A0A059A345_EUCGR Unreviewed; 665 AA. AC A0A059A345; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_K02197 {ECO:0000313|EMBL:KCW48517.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW48517.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|EMBL:KCW48517.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Leaf extractions {ECO:0000313|EMBL:KCW48517.1}; RA Schmutz J., Hayes R., Myburg A., Tuskan G., Grattapaglia D., RA Rokhsar D.S.; RT "The genome of Eucalyptus grandis."; RL Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198763; KCW48516.1; -; Genomic_DNA. DR EMBL; KK198763; KCW48517.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 539 623 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 74155 MW; 2987D57CA61C3B98 CRC64; MSKQPPTQEL AAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMKQQGNVSP SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRISPAEFI IPYDQYMESL KKNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADPKGWR DTKWRSLKVR WDENSAIPRP ERVSPWNVEP ALAPLALNPL PVSRPKRPRS SILPSSPESS VLTREAADPS SSNGHSRILQ GPESSTLRGI ATDNDFDVVE KSVMFTPSME EEKIDMLSAS KRHGLDSWMT SGRRGPTCAD LLSGFGGNTD VSHGFSLSSE QSSAANPARK HLVDQGRKFH IIGNSWSMIP SSLSLNLSES NRNSSLHGND MHSPQGIGKY SGSKEYPVVH GQRVEQPHQN WVMRPPMSPH FNFPHASESI SKSPYAQQHE AIKAKGGNCK LFGIPLVSNP VMAKSAVSVR SATNVFTDHV DSPSCQAHGF RLDQPMEPLN AANGGDDLVA NELEKEKLFQ NSQPHNRDVH HRVQASSTRS CTKVQKQGIA LGRSVDLAKF SNYDELRAEL DQLFEFGGEL MNPRSNWLIV YNDDEGDMML VGDDPWQEFC GIVRKIFIYT REEVQKMKPG TISAKDEDNL MVDEGVFSKK MTSDTLPSAS DPKNC // ID A0A059A3Y6_EUCGR Unreviewed; 663 AA. AC A0A059A3Y6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_K02197 {ECO:0000313|EMBL:KCW48518.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW48518.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198763; KCW48518.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 537 621 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 663 AA; 74012 MW; 01D27FF75C2320D5 CRC64; MSKQPPTQEL AAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMKQQGNVSP SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRISPAEFI IPYDQYMESL KKNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADPKGWR DTKWRSLKVR WDENSAIPRP ERVSPWNVEP ALAPLALNPL PVSRPKRPRS SILPSSPESS VLTREDPSSS NGHSRILQGP ESSTLRGIAT DNDFDVVEKS VMFTPSMEEE KIDMLSASKR HGLDSWMTSG RRGPTCADLL SGFGGNTDVS HGFSLSSEQS SAANPARKHL VDQGRKFHII GNSWSMIPSS LSLNLSESNR NSSLHGNDMH SPQGIGKYSG SKEYPVVHGQ RVEQPHQNWV MRPPMSPHFN FPHASESISK SPYAQQHEAI KAKGGNCKLF GIPLVSNPVM AKSAVSVRSA TNVFTDHVDS PSCQAHGFRL DQPMEPLNAA NGGDDLVANE LEKEKLFQNS QPHNRDVHHR VQASSTRSCT KVQKQGIALG RSVDLAKFSN YDELRAELDQ LFEFGGELMN PRSNWLIVYN DDEGDMMLVG DDPWQEFCGI VRKIFIYTRE EVQKMKPGTI SAKDEDNLMV DEGVFSKKMT SDTLPSASDP KNC // ID A0A059A455_EUCGR Unreviewed; 671 AA. AC A0A059A455; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_K02197 {ECO:0000313|EMBL:KCW48514.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW48514.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198763; KCW48514.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 545 629 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 671 AA; 74818 MW; B4427AE1052720AC CRC64; MSKQPPTQEL AAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMKQQGNVSP SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRISPAEFI IPYDQYMESL KKNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADPKGWR DTKWRSLKVR WDENSAIPRP ERVSPWNVEP ALAPLALNPL PVSRPKRPRS SILPSSPESS VLTREGYICK VAADPSSSNG HSRILQGPES STLRGIATDN DFDVVEKSVM FTPSMEEEKI DMLSASKRHG LDSWMTSGRR GPTCADLLSG FGGNTDVSHG FSLSSEQSSA ANPARKHLVD QGRKFHIIGN SWSMIPSSLS LNLSESNRNS SLHGNDMHSP QGIGKYSGSK EYPVVHGQRV EQPHQNWVMR PPMSPHFNFP HASESISKSP YAQQHEAIKA KGGNCKLFGI PLVSNPVMAK SAVSVRSATN VFTDHVDSPS CQAHGFRLDQ PMEPLNAANG GDDLVANELE KEKLFQNSQP HNRDVHHRVQ ASSTRSCTKV QKQGIALGRS VDLAKFSNYD ELRAELDQLF EFGGELMNPR SNWLIVYNDD EGDMMLVGDD PWQEFCGIVR KIFIYTREEV QKMKPGTISA KDEDNLMVDE GVFSKKMTSD TLPSASDPKN C // ID A0A059A598_EUCGR Unreviewed; 666 AA. AC A0A059A598; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_K02197 {ECO:0000313|EMBL:KCW48515.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW48515.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198763; KCW48515.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 624 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 666 AA; 74254 MW; C4008263869BCE80 CRC64; MSKQPPTQEL AAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMKQQGNVSP SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRISPAEFI IPYDQYMESL KKNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADPKGWR DTKWRSLKVR WDENSAIPRP ERVSPWNVEP ALAPLALNPL PVSRPKRPRS SILPSSPESS VLTREVAADP SSSNGHSRIL QGPESSTLRG IATDNDFDVV EKSVMFTPSM EEEKIDMLSA SKRHGLDSWM TSGRRGPTCA DLLSGFGGNT DVSHGFSLSS EQSSAANPAR KHLVDQGRKF HIIGNSWSMI PSSLSLNLSE SNRNSSLHGN DMHSPQGIGK YSGSKEYPVV HGQRVEQPHQ NWVMRPPMSP HFNFPHASES ISKSPYAQQH EAIKAKGGNC KLFGIPLVSN PVMAKSAVSV RSATNVFTDH VDSPSCQAHG FRLDQPMEPL NAANGGDDLV ANELEKEKLF QNSQPHNRDV HHRVQASSTR SCTKVQKQGI ALGRSVDLAK FSNYDELRAE LDQLFEFGGE LMNPRSNWLI VYNDDEGDMM LVGDDPWQEF CGIVRKIFIY TREEVQKMKP GTISAKDEDN LMVDEGVFSK KMTSDTLPSA SDPKNC // ID A0A059A5R6_EUCGR Unreviewed; 500 AA. AC A0A059A5R6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW49178.1}; GN ORFNames=EUGRSUZ_K02760 {ECO:0000313|EMBL:KCW49178.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW49178.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198763; KCW49178.1; -; Genomic_DNA. DR RefSeq; XP_010037470.1; XM_010039168.2. DR GeneID; 104426198; -. DR KEGG; egr:104426198; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 405 500 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 405 500 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 500 AA; 55633 MW; 2286FD34D4C05253 CRC64; MGCKMEACAE CSRNCVILHG KNKNASPNVS SFFKVMIGSQ FSELLYIPPK FAPTISGQLN QNIRLEDSGG RQWEVTLSKV DGSFAFQRGW NAFSRDHGLE VGYFLLFYYL GSHFRVDIYD RTGCRKVDFP ENWTSKKRSR SSRNSSDDPT GEKSSSESAS VVSGASAELD QCNRGTNVEE AVKQMASVCL KSGGKSQPLS KMVFAEELSF MMDRHIENRE GEEVRPAFDL FDFEMKNNKT CAGGNPYTVD GTGPSSVGAV LSQLCQDEAG LADKDPILDS VNNRTCEETD QNIKKLENSG NLVGLDKQET LMNNCKNEVL PDVKRELMEM DEDNNCEVER PRVIKQEQVE MTPGHWSTKM ANLEIYGKKP IVKAEYTASD GQLAKGEAIN AKASSVHMAA NTSYSVKVVT DCHSYLELPA DLPSSFFKGS SSRDRKVVFL TDPSKRTWPV LYHERLGVRS LTSGWDGFRQ ANGIQRGDDC VFQLQILSNS QSLYKVSITR // ID A0A059A8K9_EUCGR Unreviewed; 454 AA. AC A0A059A8K9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_K03433 {ECO:0000313|EMBL:KCW49976.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW49976.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198763; KCW49976.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 73 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 73 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KCW49976.1}. SQ SEQUENCE 454 AA; 50713 MW; 2848557B73D9AF0F CRC64; DKSQHHPVQD LVTKDLRGNL WCFRHIYRGK PERHLLTRGW SDFLTSKKLV TGDACIFLSG RDGDVRIGVR RLMKSQTTTS SSILSGHSMR HGILASALHA VSTGTMFTVY YRPWACTSGF IIGYQQYVKA MANDYSIGKR FRMQFEDELC GEQRLGGTVV GIEDLDQMRW PGSDWKCLKV QWDSSRVKCI CPERVSPWDI ESLDPDGKKQ AVLPTSLKRT RPCSLQLDWP PTFVMDESQW TSVAPKSQRQ PGVFQGDGGK RESRGPGDHW PPASIAPGCN PVKSLPAQDV MPANSTSWEA RTTFETKDDN EKTLAQTNRF GKCKVFGVSL ADDTSELPSL QVSNSSELSS PSSVPPLSKS SDFVQVIINE TSRGRPADLS PFKGYDKFIH GLDQLFYFGG NLIGRSSGWH VKCTDDNGDS VPIRDYNREF VSMIHQGLIC PKEEEQGKQG AHLM // ID A0A059ACB3_EUCGR Unreviewed; 712 AA. AC A0A059ACB3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_J00923 {ECO:0000313|EMBL:KCW51379.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW51379.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198762; KCW51379.1; -; Genomic_DNA. DR RefSeq; XP_010031986.1; XM_010033684.2. DR GeneID; 104421656; -. DR KEGG; egr:104421656; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 600 680 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 77678 MW; 89F2C7D9C39BAF29 CRC64; MTVLKEPERS LDPQLWHACA GGMVQMPPLN SRVFYFPQGH AEHASSAVDF AGSSGGVPPL ILCRVSSVKF LADHESDEVF AKLRLVPLPN TELDFEDDRA LEAAAAGSDN PEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVIAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGESQAAW SSGGGGSCVP QFGGFSMLLR EEENKLMRNA ANAGCDGGFR GGKGRVRQES VIEAAALAAS GQPFEVVYYP RASTPEFCVK ASSVKAAMRI QWCSGMRFKM AFETEDSSRI SWFMGTISSV QVADPIRWPN SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SNIPAIHMSP FSPPRKKLRL PHYPDFPLDG NFLVPSFSGN LHGPTGLLCC LSDNAPAGIQ GARQAQFGIP LTDHHLNNRL RLGLLSSNLH RFDPHSRSSN SITKDNTQGS ESLSCVLTMG NCSQSSEKSG DEKKHKFLLF GQPILTEQQI SRGRSGGDVV SDVVSGKGST DGNTGKPKFL SDGVGSTLKQ AGAGFLWRHG FETSELGLET GHCKVFMESE DVGRTLDLSI LGSYEELYRK LGNMFGIERS EMPSHVLYRD AAGTVKRTGD EPFSDFMRTA KRLTIFMDSA GRSIGRTLLT GRRNAENGFD STTKAGPLST YA // ID A0A059AKG9_EUCGR Unreviewed; 145 AA. AC A0A059AKG9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW54452.1}; GN ORFNames=EUGRSUZ_I00397 {ECO:0000313|EMBL:KCW54452.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW54452.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW54452.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 145 AA; 16865 MW; 6E6CEA8F9B9D426F CRC64; MSIMIICRRL PENSERRASS VFYGSKGLSP PALKMARKFR SVYPTFVIEM SPSCLRYCSV NVPAGFMRSH ISKSPQFVTL KYMNRSWSVK LFKHSERYGS GRFSGGWLMF ARETFLRRGD ACVFELVEKN RVVFEVSIFR RSDYT // ID A0A059AKH3_EUCGR Unreviewed; 291 AA. AC A0A059AKH3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW54457.1}; GN ORFNames=EUGRSUZ_I00403 {ECO:0000313|EMBL:KCW54457.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW54457.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW54457.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 32737 MW; FFCFDF0E8CF88C5C CRC64; MASRRPKGFE PPKSPHFFKI ILSSGKLIPK RFLQRHGNDI PGSVFLKVPS STILWPVEME WSDGMARLGQ GWQKFTDYYS IGFGQLLVFR YEPSSIFHVV IIDTSASEIE YPTDPVIMDK SEPKCEFILL KKEETDNISA KISEDCRPSP KFRKKSKSAL ALASRKVNSG MIRNSASRAS PATPVARTSN VPCPTALEMA RDFKSKHPMF ILVVYPSYLK DSHPVVTLKH KKDSWPVKLI KYRGDLGKLS QGWFAFARAT SLCEGDVCVL ELTKPSPTVL EVSIFRSSDY T // ID A0A059AKX0_EUCGR Unreviewed; 199 AA. AC A0A059AKX0; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW54458.1}; GN ORFNames=EUGRSUZ_I00406 {ECO:0000313|EMBL:KCW54458.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW54458.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW54458.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 23008 MW; E89899B76837AA4C CRC64; MTNVSYSWKR YEPLESPHFF KIILSDTLQS GKLIIPKRFV AKYGNRLPNQ LLLKVAGDGN WPVELEKCDG RVWICKGWRN FMDYYSIDHG HLIVFRLEGA SFFHVLIFDK SATEIEYPQK PVAPEKLLDP EVVEIDDVST ELGEHIISPR ERRELKSPLW SASPEGKGSH SGDRRTLKLK KNMRAYCSSR DYGGMIYFP // ID A0A059AL43_EUCGR Unreviewed; 84 AA. AC A0A059AL43; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW54454.1}; GN ORFNames=EUGRSUZ_I00399 {ECO:0000313|EMBL:KCW54454.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW54454.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW54454.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 84 AA; 9757 MW; 9D7A312A2F3603CD CRC64; MQSVPVKFMR THIKRSMQVV TIKHKNESWP AKLIKFPWDH GKLSGWFPFA RATSVCEGDV CVFELTKRSP TVLEVSIFRN SDYT // ID A0A059AL47_EUCGR Unreviewed; 78 AA. AC A0A059AL47; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW54459.1}; GN ORFNames=EUGRSUZ_I00407 {ECO:0000313|EMBL:KCW54459.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW54459.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW54459.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 78 AA; 9029 MW; C826F78954442416 CRC64; MKNHIKESLV VEDSTFEFQG RSWTVKFFNY PNYYCGKFQS GWAMFASDNS LSAGDVCVFE MIKKTPLVFK VSIFRHTG // ID A0A059ALH8_EUCGR Unreviewed; 115 AA. AC A0A059ALH8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW54516.1}; GN ORFNames=EUGRSUZ_I00465 {ECO:0000313|EMBL:KCW54516.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW54516.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW54516.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 115 AA; 13061 MW; 66EE6507FA3B3CAE CRC64; MLVARRCNVP CSAALEMARD FKSKHPTFIS VAYPSYVKNS TASVSVKFMR THIKRSMQVV TIKHKNESWP AKLIKFPWDH GKLSGWFPFA RATSLCEGDV CVFELTKRSP TVLEV // ID A0A059AM59_EUCGR Unreviewed; 109 AA. AC A0A059AM59; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW54455.1}; GN ORFNames=EUGRSUZ_I00400 {ECO:0000313|EMBL:KCW54455.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW54455.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW54455.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 109 AA; 12332 MW; 0C7FF7171D9BDE06 CRC64; MARDFKSKRP MFILVVYPSY IKGSTPSVST KFMRIHIKRS VQVVTLKHKK DSWPVKLIKS PGDHGRLSQG WFAFARATSL CEGDVCVFEL TKPSPTVLEV SIFRNSDST // ID A0A059AMR8_EUCGR Unreviewed; 374 AA. AC A0A059AMR8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW55292.1}; GN ORFNames=EUGRSUZ_I01218 {ECO:0000313|EMBL:KCW55292.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW55292.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW55292.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 304 365 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 374 AA; 41694 MW; 08946B634CDF49C0 CRC64; MERAEDFRAN LPAEIPSFLK TMVRSNVTTG FWLHLPMPFC KLHMPRNNIT VTLEDENGDE YPVNYIVDKT ALSAGWKKFS SARELMEGDV LVFQLVRASV FKVHIVRGNN SQGVFGLDAS RKQNDSENRM DKEVIPNEKT PSSGPVSQDV SPDNAQSKSL MVLDTNPPCT PDQPGKLGDE IGPDATHGTR LSNSISAIDC GEATSNGSLT VLVSGTAIDS DLSEYQRTRY LELCSSQNGF LHDNLLKSIN YKLAAEMISE TVNIADAIKA SNLSTSRADL EMWDKTLEGF ELLGMKVGFL RARLDQIKNV ASELERYRDA ENKQAAVQEE MRTVQVRLSK LKKLKKRLDA DIESLKTNAE RHEHVFQEEA SAPW // ID A0A059AND7_EUCGR Unreviewed; 296 AA. AC A0A059AND7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW55284.1}; GN ORFNames=EUGRSUZ_I01210 {ECO:0000313|EMBL:KCW55284.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW55284.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW55284.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 296 AA; 34221 MW; 5CC21390BA01AD46 CRC64; MQKIPPKFAR LFSEELPHRV ILKGPSGGKW NAKLRKDNAG LYIHDGWREF HMDNSLGNKE FLLFEYNGKR SFEVDIFDPT GLVRIDVPVT EGTETNLHNG KRPRGRPRKC PVVSQKTYLK SQDKQNLKEE MDLRAIITSL EPRKRKQKKK LGKLTGGFPV SRSRFRCCSI EKNASSSEVN ARLRAVEEKM FASKFPYFMT YMKMFSLEKA KMLYIPRAFA QAHCPLERAD IVLRNLEGNT WNVVCVINKN RHFFSGGWPA FIQDNKLGTG DICVFELISS KEFRVTIFRS PKTLHE // ID A0A059ANK8_EUCGR Unreviewed; 277 AA. AC A0A059ANK8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW55286.1}; GN ORFNames=EUGRSUZ_I01213 {ECO:0000313|EMBL:KCW55286.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW55286.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW55286.1; -; Genomic_DNA. DR RefSeq; XP_018718139.1; XM_018862594.1. DR GeneID; 104420533; -. DR KEGG; egr:104420533; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 177 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 177 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 32244 MW; A5C55409BBFBF2AA CRC64; MENTRRKIPD FFKAYRPEYS SQRMHVPRAF LAQLDGPLPG EILLRHRMGR QWHVKVTLEA QDAYFEDGWQ EFVRENLVET NDYMVFSYQS PGVFRVVIYG HSACEKKECA LPGEVGEGSE VQEHDSDDDD EDYNEEEQEE EEDEGRSKRS KKEGNVEERK AANEDPTNVK RYIDLKNPYF VTVVQALRSS CLYVPRSVLI DYELKLPQAV LFHDPTGRTW RGTVKVWTDR RTWITGWGAL CRHNNLKIND RCICELLEEN GVTDRIIKVH IIGGNST // ID A0A059APE4_EUCGR Unreviewed; 347 AA. AC A0A059APE4; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW55285.1}; GN ORFNames=EUGRSUZ_I01211 {ECO:0000313|EMBL:KCW55285.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW55285.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198761; KCW55285.1; -; Genomic_DNA. DR RefSeq; XP_010030658.2; XM_010032356.2. DR GeneID; 104420531; -. DR KEGG; egr:104420531; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 40529 MW; 58E5371C58904B11 CRC64; MENARARATM SWVRDERDSF CQLIFQKEPK PNLRIPSEFS ELYHHELPDT VIFKGPSGNE WPAKLQKDIG SVCVQDDGWQ NFYRDNALGN SEFLIFWYDG KKYFNVQVFD PTGVERLNVD PSKHRPRGGP RKHPVGSQNI PLSKSPNSHG KLNPELEQNR LEKIQVEERL SELKEEGKDL PDVRMSSDPG KHKNKNKQRQ VKAEKIAPHF PICRSRLRCR HLEKNASTSE ENARLEAVKE TFTSDFPFFM SYMRRSTVEK AKLLPVPSKF AKEHFLWRRT NIVLRDAEGQ TWKVAHHCNG KRHYFSRGWR AFLYDNELKI GDVCIFEVRN KKEVQVHIYR LPGTSAI // ID A0A059AXC8_EUCGR Unreviewed; 695 AA. AC A0A059AXC8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW58090.1}; GN ORFNames=EUGRSUZ_H00815 {ECO:0000313|EMBL:KCW58090.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW58090.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198760; KCW58090.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 573 666 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 695 AA; 77471 MW; 2E189A46D7771EB5 CRC64; MEAEQVVANS GDPGREMWLD KQEEEEENLL NANEAASVFY SDFPLPDFPC MSSSSSSSST RAPVKATTCS SSSSSSASSS SSAASWAVLR SEDTAAENME NRKNSRRSDY CDDNSNHIFQ HAREADAPSR ALSSTASMEI ILENPVDQAS TDAVGSCIDA IDTFGYMDLL ENNDFFDPAS LFQSELLLEE EFQNQEPEAQ LAEQQNQRAQ ATSAEADSGN RTGPVSDEMG AVLLEWLTEN KDDISPDDLR RIKIKKATVE TAAKRLGGGR EAMKQLLKLI LQWVQTNHLH KKRLKEAASV SASVSASQVP YQYQEPFHHH QNPNPNLSFS PEPNGLHPQS FPHQPQWIPP PPPYVACPTP MMEVPPPPPG YCPAPGYMGD PAYSHGAPPD HLSGNPFPPE YQMINSAQSW PMSQFSMAAQ PYDYPENFHP PPQAQGLRGY QHHQYPFQYY NGHGQRLIRL GSSATKEARK KRMARQRRFL SHHRSSHHHH QQSNQQGNHQ SMAVAAEQHA RLGGENCAIP EAAHQAHNHP GSWVYWPSPA HAGQVAVPPS LPAMDPVQVA HPADQPAMQQ QNYQRQVAPE RRQKEAETHL PELEARDGIS IAMEDIGTSK VWNMRYRFWP NNKSRMYLLE NTGDFVRANG LEEGDFIVIY SDVKCGKYLI RGVKVRQPEG TKPEAHKRPE KSQRSAHASS SQKKQ // ID A0A059AZ52_EUCGR Unreviewed; 498 AA. AC A0A059AZ52; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW59024.1}; GN ORFNames=EUGRSUZ_H01651 {ECO:0000313|EMBL:KCW59024.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW59024.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198760; KCW59024.1; -; Genomic_DNA. DR RefSeq; XP_010070338.1; XM_010072036.2. DR GeneID; 104457096; -. DR KEGG; egr:104457096; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 441 475 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 498 AA; 55520 MW; 3309808A9C98B17C CRC64; MAAGQVKTEM QDEGPQATAT APAPEELRNL KLPAEGGVTL ALLSPTSASR AKADAGSSSM VRVRRRKGTI LKIKMKDSGS QVVSDRSRKS LSFKKSKTAL DGTLDPGEVK SGAMVRAEEV QSNLEPTYPS FIKALVRSHV GSCFWMGLPG VFCRAHLPNK DTTIVLEDEY GKQYEMKYIA HKTGLSAGWR QFSVGHNLLE GDVLVFQLVE PNKFKVYIIK AGNLAEVDGA LGLLNLDAPS KKAEAEDGTN HEASARQPRR RRGSSLPLAI VQKRRKKSDQ QKSTPNPECL VEQSENDSEG VNSEVLEGFK LSLPDVQFKD VDSFSNFHIV INGMVVNSEL SEDILRKYYE LCRSQNVFLH ENLLKGMNYK LIVGIICETV HVADAVRACK ITTTREEFET WDKTLKAFKI LGMNVGFVRA RLKQLVGLAF ESEMAMETQK YVESKRNRDC ADEEISNLEA RLLELKEDNR RVSAEIECLK PKVESYELKF QEEVTAPW // ID A0A059AZB6_EUCGR Unreviewed; 498 AA. AC A0A059AZB6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW59322.1}; GN ORFNames=EUGRSUZ_H02009 {ECO:0000313|EMBL:KCW59322.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW59322.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198760; KCW59322.1; -; Genomic_DNA. DR RefSeq; XP_010070516.1; XM_010072214.2. DR GeneID; 104457276; -. DR KEGG; egr:104457276; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 441 475 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 498 AA; 55517 MW; DB221B07AEE91B10 CRC64; MAAGQVKTEM QDEGPQATAP APAPEELRNL KLPAEGGVTL ALLSPTSASR AKADAGSSSM VRVRRRKGTI LKIKMKDSGS QVVSDRSRKS LSFKKSKTAL DGTLDPGEVK SGAMVRAEEV QSNLEPTYPS FIKALVRSHV GSCFWMGLPG VFCRAHLPNK DTTIVLEDEY GKQYEMKYIA HKTGLSAGWR QFSVGHNLLE GDVLVFQLVE PNKFKVYIIK AGNLAEVDGA LGLLNLDAPS KKAEAEDGTN HEASARQPRR RRGSSLPLAI VQKRRKKSDQ QKSTPNPECL VEQSENDSEG VNSEVLEGFK LSLPDVQFKD VDSFSNFHIV IDGMVVNSEL SEDILRKYYE LCRSQNVFLH ENLLKGMNYK LIVGIICETV HVADAVRACK ITTTREEFET WDKTLKAFKI LGMNVGFVRA RLKQLVGLAF ESEMAMETQK YVESKRNRDC ADEEISNLEA RLLELKEDNR RVSAEIECLK PKVESYELKF QEEVTAPW // ID A0A059AZI7_EUCGR Unreviewed; 279 AA. AC A0A059AZI7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW59283.1}; GN ORFNames=EUGRSUZ_H01962 {ECO:0000313|EMBL:KCW59283.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW59283.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198760; KCW59283.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 204 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 204 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 32149 MW; E08DF9E60E2C196B CRC64; MHCNSPDLLF QTHTYANGIP KKFVIKYGSN LSDLVFLQVP SGQAWEVELV RRTDGVWLRR GWPDFVKHYA IKHGHFLVFR YEGGSAFRVV IFDKSASEIK YPIITELPKR EENEGDTLVE VFEDHFDRPL RIQSGASNIV CDVNAGLNSS CWKRERPFRG GEKSEALKRA ASFQYPNPFF LTLMQPSLIR HSLHIPSYRS GGDIDLYVSN ERFWLARYKF GIYGRKTQVK INGGWKLFVQ DNNLKVGDVC VFELTRKVGQ VSFRVVIFRA NHDAIELGR // ID A0A059B061_EUCGR Unreviewed; 281 AA. AC A0A059B061; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW59286.1}; GN ORFNames=EUGRSUZ_H01965 {ECO:0000313|EMBL:KCW59286.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW59286.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198760; KCW59286.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 32718 MW; 54D2AF960B773A61 CRC64; MVGRGYFESQ TPHFFKIVLS DALQNGRLGI PKKFVRKYGS SLSDLVFLHL ASGDVWEVEL LRGNDGAFLR RGWPDFVKHY AIEHGHFLVF RYEGGSAFRV VIFDKSATEI KYPLVSENDD PRMEEDVGDA SVEVFEDHSD QVSEKSEALE RATSFQSPNP FFLAIMQPSF IRHCLSAPAR FFMKYIPNFR SKGDIILYVS DERFWSVRYK FGIYGRRRQI KFNCGWKRFV QDNNLKLGDV CVFEIMWKVH QISFRVLIFR ANGDTVEFGR GHLHVKLCFI R // ID A0A059B1Q4_EUCGR Unreviewed; 343 AA. AC A0A059B1Q4; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW60177.1}; GN ORFNames=EUGRSUZ_H02901 {ECO:0000313|EMBL:KCW60177.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW60177.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198760; KCW60177.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39683 MW; 2B87A1E10D40EE25 CRC64; MSQEEERVAA NGRRACIFYR LMVDSLIHEK QLGIPKKFAR KYGDELSDVV RLVASDSSIW LVELRKHGSR LWLHDGWQRF LEHHSIHSGH FLIFKYEGDS TFHVYVYNLT ASWERNSHNP LGSKEFISSR QFPMHTKKNQ DTDSVVEIRD LCCACPICSC LKDKCFQECR GWRTTDRIHD GVNIIRPEPV ADWEVFHQDK GASYGKSSRE CNAAIIEARG MAIRAAHTYE PNNPFFQVIM RPSYVREKFL VNLPASFIGM HLKGDSRDIT LQVSDGKKWR VRCLLFNGKG KISKGWREFV ADNKLEIGDV CIFELLQRED IVLKVTIFRV PEIGQKYIAT LTN // ID A0A059B8M4_EUCGR Unreviewed; 671 AA. AC A0A059B8M4; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_G00076 {ECO:0000313|EMBL:KCW62582.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW62582.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW62582.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 552 641 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 671 AA; 74833 MW; 68A7971BD0BFBCDE CRC64; MASHPSNHSC GRPHQGAFAD ALYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASTN RGLEQQMPSF DLPSKILCRV VNIQLRAEPE TDEVYSQITL LPEPEQKEVT SPDPPLPEPP RCKVHSFCKT LTASDTSTHG GFSVLRRHAE ECLPLLDMTQ QPPWQELVAT DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV SSKKLIAGDA FIFLRGEDGE LRVGVRRLMR QQSNMPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARAHK LSIGMRFKMK FEGEEVSERR FSGTIIGVGD SMSSGWTNSE WRSLKVQWDE PSSIMRPDRV SSWELEPLVV TAPSNSQQVQ RKRARPTVLP SSSVQELSVF GGPKAPEYSS DFLHGDSQRG RDVYLSPKFS PSARSKSLNY NGNGSPAALS GYTVNWPSHM ETITDPCTPV NGKESSEKRE SGGSGCRLFG VQLLDSAKKE SLSVTLAAGQ RDDDKTALSV DDDSKEHQEP SCVNHFDNPS ACYDPEKSCP NSSQDLQSRQ IRTCIKVHMQ GIAVGRAVNL AQFNRYEDLL MRFEEMFEIG GELCGSMRKW QVVYTDDEDD MMMVGDDPWN MAKKIYIYTT EEVKRLLPKI KLPVEDVGPA NGGSDVAVNT DDRSSVVGSG C // ID A0A059B8Y5_EUCGR Unreviewed; 649 AA. AC A0A059B8Y5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_G00076 {ECO:0000313|EMBL:KCW62583.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW62583.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW62583.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 526 619 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 649 AA; 72667 MW; 5351538F2CCAEEA9 CRC64; MASHPSNHSC GRPHQGAFAD ALYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASTN RGLEQQMPSF DLPSKILCRV VNIQLRAEPE TDEVYSQITL LPEPEQKEVT SPDPPLPEPP RCKVHSFCKT LTASDTSTHG GFSVLRRHAE ECLPLLDMTQ QPPWQELVAT DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV SSKKLIAGDA FIFLRGEDGE LRVGVRRLMR QQSNMPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARAHK LSIGMRFKMK FEGEEVSERR FSGTIIGVGD SMSSGWTNSE WRSLKVQWDE PSSIMRPDRV SSWELEPLVV TAPSNSQQVQ RKRARPTVLP SSSVQELSVF GGPKAPEYSS DFLHGDSQRG RDVYLSPKFS PSARSKSLNY NGNGSPAALS GYTVNWPSHM ETITDPCTPV NGKESSEKRE SGGQRDDDKT ALSVDDDSKE HQEPSCVNHF DNPSACYDPE KSCPNSSQDL QSRQIRTCIK VHMQGIAVGR AVNLAQFNRY EDLLMRFEEM FEIGGELCGS MRKWQVVYTD DEDDMMMVGD DPWNEFCSMA KKIYIYTTEE VKRLLPKIKL PVEDVGPANG GSDVAVNTDD RSSVVGSGC // ID A0A059B975_EUCGR Unreviewed; 565 AA. AC A0A059B975; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_G00076 {ECO:0000313|EMBL:KCW62584.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW62584.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW62584.1; -; Genomic_DNA. DR RefSeq; XP_010065240.1; XM_010066938.2. DR GeneID; 104452462; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 565 AA; 62990 MW; 31E8F07C53100F0D CRC64; MASHPSNHSC GRPHQGAFAD ALYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASTN RGLEQQMPSF DLPSKILCRV VNIQLRAEPE TDEVYSQITL LPEPEQKEVT SPDPPLPEPP RCKVHSFCKT LTASDTSTHG GFSVLRRHAE ECLPLLDMTQ QPPWQELVAT DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV SSKKLIAGDA FIFLRGEDGE LRVGVRRLMR QQSNMPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARAHK LSIGMRFKMK FEGEEVSERR FSGTIIGVGD SMSSGWTNSE WRSLKVQWDE PSSIMRPDRV SSWELEPLVV TAPSNSQQVQ RKRARPTVLP SSSVQELSVF GGPKAPEYSS DFLHGDSQRG RDVYLSPKFS PSARSKSLNY NGNGSPAALS GYTVNWPSHM ETITDPCTPV NGKESSEKRE SGGSGCRLFG VQLLDSAKKE SLSVTLAAGQ RDDDKTALSV DDDSKEHQEP SCVNHFDNPS ACYDPEKSCP NSSQDLQSRQ IRTCIKMVVE LIHVL // ID A0A059B9L6_EUCGR Unreviewed; 675 AA. AC A0A059B9L6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_G00076 {ECO:0000313|EMBL:KCW62581.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW62581.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW62581.1; -; Genomic_DNA. DR RefSeq; XP_010065238.1; XM_010066936.2. DR RefSeq; XP_010065239.1; XM_010066937.2. DR GeneID; 104452462; -. DR KEGG; egr:104452462; -. DR KO; K14486; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 552 645 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 675 AA; 75300 MW; 678A9DDE3203886B CRC64; MASHPSNHSC GRPHQGAFAD ALYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASTN RGLEQQMPSF DLPSKILCRV VNIQLRAEPE TDEVYSQITL LPEPEQKEVT SPDPPLPEPP RCKVHSFCKT LTASDTSTHG GFSVLRRHAE ECLPLLDMTQ QPPWQELVAT DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV SSKKLIAGDA FIFLRGEDGE LRVGVRRLMR QQSNMPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARAHK LSIGMRFKMK FEGEEVSERR FSGTIIGVGD SMSSGWTNSE WRSLKVQWDE PSSIMRPDRV SSWELEPLVV TAPSNSQQVQ RKRARPTVLP SSSVQELSVF GGPKAPEYSS DFLHGDSQRG RDVYLSPKFS PSARSKSLNY NGNGSPAALS GYTVNWPSHM ETITDPCTPV NGKESSEKRE SGGSGCRLFG VQLLDSAKKE SLSVTLAAGQ RDDDKTALSV DDDSKEHQEP SCVNHFDNPS ACYDPEKSCP NSSQDLQSRQ IRTCIKVHMQ GIAVGRAVNL AQFNRYEDLL MRFEEMFEIG GELCGSMRKW QVVYTDDEDD MMMVGDDPWN EFCSMAKKIY IYTTEEVKRL LPKIKLPVED VGPANGGSDV AVNTDDRSSV VGSGC // ID A0A059BAW7_EUCGR Unreviewed; 463 AA. AC A0A059BAW7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63263.1}; GN ORFNames=EUGRSUZ_G00888 {ECO:0000313|EMBL:KCW63263.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63263.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63263.1; -; Genomic_DNA. DR RefSeq; XP_010065663.1; XM_010067361.2. DR GeneID; 104452868; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 359 455 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 359 455 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 463 AA; 53150 MW; 42128CDA75361D4E CRC64; MASGRRRRRE DGGVDPDTAT GPRLESPHFF KIILSDTLES GKLGIPKKFL RRYGKDLSSL VLLEVLGNST WSMGVEKLND GTVWLWKGWQ EFMQHYSIGP GHLVVFKYKG NSTFRVMIFD RSASEIDYSL SSISNLGSGF ISPKRENVIE VEDSEDFAPC QEKRVDPHSS CSQPSPSCSS PDLEEGIGQS RCRASHPEPN FGGPMSSWPL RSFELACEFD SEYPFFKVVI RPSYIEHHVV NVPRWFIRQH IQQIKEIVTL RHSNRTWPVK LRTYPSGSMQ FSSGWIAFVR GTHLRVGNVC VFELIDRDDI VFRVYIFSSA GRNNESKCRM NRSEPVFCDP TPSRPLTTPE LAGEFDSEHP FFELVIQQSH FRKMHVPGQF VRQHIQEHKK EGTLRYSDRS WPVKLSRYTR GMRVFFSAGW RAFARETHLC EGNVCVFELI DRDDVVFKVS IFSSGGKDHI HID // ID A0A059BB47_EUCGR Unreviewed; 386 AA. AC A0A059BB47; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63264.1}; GN ORFNames=EUGRSUZ_G00888 {ECO:0000313|EMBL:KCW63264.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63264.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63264.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 386 AA; 44200 MW; 6ACC792501A62643 CRC64; MASGRRRRRE DGGVDPDTAT GPRLESPHFF KIILSDTLES GKLGIPKKFL RRYGKDLSSL VLLEVLGNST WSMGVEKLND GTVWLWKGWQ EFMQHYSIGP GHLVVFKYKG NSTFRVMIFD RSASEIDYSL SSISNLGSGF ISPKRENVIE VEDSEDFAPC QEKRVDPHSS CSQPSPSCSS PDLEEGIGQS RCRASHPEPN FGGPMSSWPL RSFELACEFD SEYPFFKVVI RPSYIEHHVV NVPRWFIRQH IQQIKEIVTL RHSNRTWPVK LRTYPSGSMQ FSSGWIAFVR GTHLRVGNVC VFELIDRDDI VFRVYIFSSA GRNNESKCRM NRSEPVFCDP TPSRPLTTPE LAGEFDSEHP FFELVIQQSH FRKMATYSRT QERRNS // ID A0A059BBI7_EUCGR Unreviewed; 698 AA. AC A0A059BBI7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63266.1}; GN ORFNames=EUGRSUZ_G00890 {ECO:0000313|EMBL:KCW63266.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63266.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63266.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 203 299 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 341 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 456 552 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 690 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 203 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 341 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 456 552 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 609 690 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 81136 MW; 3423B20BE9AC930C CRC64; MARRRRHHRR GHRRRRVEDE GAEQEATPAT PPSCPHFFKI ILSQTLESGK LGIPKRFLRR HGKDLLGLVF LKVEGGLTWP VKLEKSEDGM VWLWKGWRKF MEHYSIGFGH LLVFRYEGDS VFRVIIFDKS ASEIDYPSSI GSYGPRPEGE FLSRKEEDVV EIEDSEGFAP RSRPRSKGLS RGFGGRSSLT ALELASKFKS DHPFFRVVMR PSYIQKYLCV PCEFFRKHVQ KNKQLVTLRY SDRSWQVKLR SYGHRRMAFL STGWSSFVRE TGLHVSDVCV FELIDRNDIM FRVSNFNNDG WIEIGQSQCQ ESSSEPSFHG SPCLSPVTAH EKASGFESDH PFFKVVMRPS YVRKQLSIPS GFFRKHVQKN KQIATLRYSD RLWQVKLRSF EHRGTAFLSN GWCSFVRETG LRLRDVCVFE LIDRDDIVFS VYIFKSDGLS PVSAFEKARR LESDHPFFKV VMRPSYVRKR LSIPSEFFRK HVKKNKQVAT LSYLDRSWQV KLKSYDHRGM AFLTSGWPSF TRETGLRLGD VCVFELIDRD DIVFRVSIFS SDGRIEIEQS QFRESSSEPA FHGSPCPSPV ATYEKASKFE SEYPFFHVVI LPNHIYTKLN IPWKFMKTYI RGDRRMVTLV NSGRSWEVKL HGYKRFQIAF LAAGWSAFVR EARLCIGDAC VFELIDRDNI VFRISIFSGV NREVICID // ID A0A059BBK3_EUCGR Unreviewed; 484 AA. AC A0A059BBK3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63612.1}; GN ORFNames=EUGRSUZ_G01238 {ECO:0000313|EMBL:KCW63612.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63612.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63612.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 378 476 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 378 476 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 484 AA; 55173 MW; 8CD47EF123189E85 CRC64; MASCSGHRRR RREGGAVERE AVTGPPRRGS RCFFKFILSG ALDSGSSCGK DLSNSVLLKV PDGSTWTIEL EKRNHDMVLL GKGWREFMEH YSIGHGHFIV FKYKENSTFR VIIFDKSASE MDYSSSRGET SYLGSELPSP EAEDVVETDR LEDVKPRQRM RMEPHLPCSQ LSPSFSPRGS EVSMDTDPEE PHLAQAQAGL TERSKQPTCG ASHSELDFHG PMLPRPLTTP ELTRKINSKY PFFIKVIRRS YMSKLSIPGG FIKQHKLEKQ RATLRHANRS WSVRLGGSNR HVRGALCLFF SAGRDAFARE THLHVGHVCM FKLIDRDDIV FEVSILSVLR GNKLSKRRVN HHELGIRGPT PPKPPTTPEV ASEFESEHPF FKVVIQQYHM KQMYVPNQFS QQHIQENKEM ATLRFSDRSW LVKLLSYTHN KYQGVYFSVG WKEFARETHL CVGNICMFEL IDSDDVVFQV SVFSSAGKDL IHID // ID A0A059BBK8_EUCGR Unreviewed; 339 AA. AC A0A059BBK8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63617.1}; GN ORFNames=EUGRSUZ_G01245 {ECO:0000313|EMBL:KCW63617.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63617.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63617.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39012 MW; 5F021A6C699FA3B1 CRC64; MASCSRRRRR RRREDGAVEP EVVAGRCRES RCFFKIILSD TLESGKLGIP KSFLRRCGKD LSNSVLLQVP GGSTWTIELE KCNNDMVSLW KGWQDFMEYY SIGHGHLIVF KYIGNSTFGI IIFDKSTSEI DYSLSSGKKT DLGSKFPSPK TEDVVEAEDP EELITRRKMR VESHLPYSQL SPIYSPRGSK DGIRRSRCKM NHSEPFFGGP TCIGPLSGFE LASEFESEYP FFKVMMQPSY LKHHILYVPR RFIMQHIRKI KEIAILRHSG RYLDRSWPLK LLRYKQDHKA FFSGGWPAFA RENCLHVGDV CMFELIDRED FVFEVSIFCS AGTGPILTD // ID A0A059BBX3_EUCGR Unreviewed; 110 AA. AC A0A059BBX3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63618.1}; GN ORFNames=EUGRSUZ_G01246 {ECO:0000313|EMBL:KCW63618.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63618.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63618.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12549 MW; AA4C81BD35E0CB44 CRC64; MVIPPSYMNC LSLPVGFIKQ HIQENKGMAT LRFSGESWPV KLLSYTQTRK ILSGYTHDTR VFFTTGWTAF ARETHMRMGN LCVFELIDRD DVVFQVSNFS SAGKEPIPID // ID A0A059BC43_EUCGR Unreviewed; 284 AA. AC A0A059BC43; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63792.1}; GN ORFNames=EUGRSUZ_G01455 {ECO:0000313|EMBL:KCW63792.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63792.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63792.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 33311 MW; 2CAC85E4340EDCB2 CRC64; MGKVVGSKRD YEECRRQRME ENKKRRMEEL RLNKLAAALT AASPKSTPVK QSKMRTPRRQ PETYSEPVRR SSRTANKPAP NYKEVIEINP SERVRSRSYS RRDLLNRVYA SDTIRTYAIE RAEQLQSSLD AELPSFIKPM LQSHVTGGFW LSLPYNFCHK HIPHRDDTVT LVDEDGEEFE TKYLIDKNGL SGGWRGFSIA HDLVDGDALV FQLIQPLTFK CVPFGRYTSS EPMNQRRRKR KSLKGRTRRK QRTVERRRRK QKTVERRRKP KSGKRRKGKQ MSNT // ID A0A059BC48_EUCGR Unreviewed; 207 AA. AC A0A059BC48; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63609.1}; GN ORFNames=EUGRSUZ_G01236 {ECO:0000313|EMBL:KCW63609.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63609.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63609.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 207 AA; 23345 MW; 4C59B590C857B491 CRC64; MASRNSRRRR RREDGAVERE VATGPRLGSR CFFKIILSNA LESGKLGIPK NFLRRCGKDL SNSVLLKVPG GSAWTIELEK CNNDLVSLWK GWREFMEHYS IGHGHLIVFK YKGNSTFHVI IFDKSASEID YSSSSSKISY LGSKFPSPKS EDVLGAEDLQ DSTPRQRMRV EPHLPYSQLS MSYPPQGLEG VTLHCLSHVS SYITLFC // ID A0A059BC50_EUCGR Unreviewed; 493 AA. AC A0A059BC50; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63614.1}; GN ORFNames=EUGRSUZ_G01240 {ECO:0000313|EMBL:KCW63614.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63614.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63614.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 348 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 387 485 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 348 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 387 485 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 493 AA; 56483 MW; C37B1CC28AF19B7F CRC64; MASCSGRRRR RREGGAAERE AAAGPPRRGS RCFFKFILSG AIDSGKLGIP KNFLRRRGKD LSNSVLLKVP GSSTWTIELE KHNHDMVLLG KGWREFMEHY SIGHGHFIVF KYKENSTFRV IIFDKSASEI DYSSSRGEPS YLGSELPSPE AEDVVETDRL EDVKPRQRMR MEPHLPCSQL SPSFSPRGSE VSMDTDPEEP HMAQAQAGLT ERSKQPTCGA SHSELDFHGP MLPRPLTTPE LTRKINSEYP FFIKVIRRSY MSKLSIPGGF FKQHKLEKQR VTLRHANRSW SVSFGRSNRH VRGALCLFFS AGWDAFARET HLHIGDVCMF KLIDRDDIVF EVSVLSVLRG NKLSKRKLNH HELVTRGPRP PKPPTTPEVA SEFESEHPFF KVVIRQYHMK HMYVPNQFSQ QHIQENKEMA TLRFSDRSWP VKLLSYTHNK YQGVYFSVGW KEFARETHLC VGNICMFELI DSDDVVFQVS VFSSAGKNLI HID // ID A0A059BC57_EUCGR Unreviewed; 391 AA. AC A0A059BC57; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63265.1}; GN ORFNames=EUGRSUZ_G00889 {ECO:0000313|EMBL:KCW63265.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63265.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63265.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 30 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 30 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44547 MW; C47A1DCE6C4E77FB CRC64; MQHYSIGHGH LIVFKYKGSS TFRVMIFNKS SSEIDYSSSS ISNLGSGFIS PEWEDVIEME DSEDSASHQK MRVEPHSPCS QLSPSCSSQD LEDGAGQSRS RASHSKPVSG GSMSPWPLSS FELASKFDSE YPFFKVVMRP SYMKKEAYVP RRFIIQHILE IKEIVTLRHS GRSWPVKLWS NPRSVHGAAF SSGWGAFVRG TRLHVGNVCV FELIDRDDIV FRVYIFSSKG TCKQSKCRVN HLEPVFHDPA PPRPLTTPEL ARDFDSEHPF FKLVIRECHL KTLSVPDRFI RQHIRENKGT ATLRYSDRSW PEMPACLSSS IGKIMCSKSP SSATAVRTRF TLIEVITGHV TIGCLQRRCK SRISNYASSI QQWQIDETET LFCSWFLVFW W // ID A0A059BCA8_EUCGR Unreviewed; 381 AA. AC A0A059BCA8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63847.1}; GN ORFNames=EUGRSUZ_G01517 {ECO:0000313|EMBL:KCW63847.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63847.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63847.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 370 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 370 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43724 MW; 78607AD556927D87 CRC64; MPRPYFYKLV LSSTIQDKRL RIPENFVKKF RDELSSVATL NVPDGHVWHV GIRKSESKLW FHEGWQEFVQ HYSIGIGYFL VFRYEGGTTF QVFIYNLTTS EINYHSNGRV PSEMPHHSRQ YHVFKDMEDD DAVDISSSST YYPSGDSLKR KAVNSSVDQL TLSRGYNSMH LQNLFNGTVH QQKGGANSHA GMRPIEDIVI QAGGIKFKSE DEVKVQSTDQ STRKIKKSSK KKRKNDPNEP MPSALQEEDG EMRFRFYASA STRKRLVTAE EREKAINAAK MFEPPNPFCR YLPSCFAEKH LNGVSGFIKL QSTDGKQWPV RCLYRGGRAK LSQGWYDFSL ENNLEEGDVC VFELMRAREV VLQVTVFRVV EEGGLLSHHG R // ID A0A059BCJ5_EUCGR Unreviewed; 321 AA. AC A0A059BCJ5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63848.1}; GN ORFNames=EUGRSUZ_G01517 {ECO:0000313|EMBL:KCW63848.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63848.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63848.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 36639 MW; 5A9B903D11E0C65A CRC64; MPRPYFYKLV LSSTIQDKRL RIPENFVKKF RDELSSVATL NVPDGHVWHV GIRKSESKLW FHEGWQEFVQ HYSIGIGYFL VFRYEGGTTF QVFIYNLTTS EINYHSNGRV PSEMPHHSRQ YHVFKDMEDD DAVDISSSST YYPSGDSLKR KAVNSSVDQL TLSRGYNSMH LQNLFNGTVH QQKGGANSHA GMRPIEDIVI QAGGIKFKSE DEVKVQSTDQ STRKIKKSSK KKRKNDPNEP MPSALQEEDG EMRFRFYASA STRKRLVTAE EREKAINAAK IICHPALLKS ISMGSQDLLS YRVLMANSGL FDAFIEVVEP N // ID A0A059BCJ6_EUCGR Unreviewed; 507 AA. AC A0A059BCJ6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63611.1}; GN ORFNames=EUGRSUZ_G01238 {ECO:0000313|EMBL:KCW63611.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63611.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63611.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 378 476 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 378 476 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 507 AA; 57624 MW; 6F886F8491644299 CRC64; MASCSGHRRR RREGGAVERE AVTGPPRRGS RCFFKFILSG ALDSGSSCGK DLSNSVLLKV PDGSTWTIEL EKRNHDMVLL GKGWREFMEH YSIGHGHFIV FKYKENSTFR VIIFDKSASE MDYSSSRGET SYLGSELPSP EAEDVVETDR LEDVKPRQRM RMEPHLPCSQ LSPSFSPRGS EVSMDTDPEE PHLAQAQAGL TERSKQPTCG ASHSELDFHG PMLPRPLTTP ELTRKINSKY PFFIKVIRRS YMSKLSIPGG FIKQHKLEKQ RATLRHANRS WSVRLGGSNR HVRGALCLFF SAGRDAFARE THLHVGHVCM FKLIDRDDIV FEVSILSVLR GNKLSKRRVN HHELGIRGPT PPKPPTTPEV ASEFESEHPF FKVVIQQYHM KQMYVPNQFS QQHIQENKEM ATLRFSDRSW LVKLLSYTHN KYQGVYFSVG WKEFARETHL CVGNICMFEL IDSDDVVFQV SVFSSAGGTE KSTCRASRSE LDFHGPALSR PLTLPEF // ID A0A059BCJ9_EUCGR Unreviewed; 207 AA. AC A0A059BCJ9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63616.1}; GN ORFNames=EUGRSUZ_G01242 {ECO:0000313|EMBL:KCW63616.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63616.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63616.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 207 AA; 23351 MW; 79DA00436651F629 CRC64; MASRNGRRRR RREDGAVERE VATGPRLGSR CFFKIILSNA LESGKLGIPK NFIRRCGKDL SSSVLLKVPG GSAWTIELET CNNDLVSLWK GWREFMEHYS IGHGHLIVFK YKGNSTFHVI IFDKSASEID YSSSSSKILY FGSEFPSPKS EDVLEAEDLQ DSTPCQRMRV EPHLPYSQLS LSYPPQGLEG VTLHFLSHVS SYITLFS // ID A0A059BCP0_EUCGR Unreviewed; 96 AA. AC A0A059BCP0; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63957.1}; GN ORFNames=EUGRSUZ_G01639 {ECO:0000313|EMBL:KCW63957.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63957.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63957.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 96 AA; 11011 MW; 9850842657BCC8A8 CRC64; MGVPSEFFRK HLRKSEQMVT LKCSDRLWQV KLKSYKPRDT AVLSTGWSLF ARETGLRARD VCVFELTDRD NIVFEVSIFS SDGQSIFSSA EVICID // ID A0A059BD55_EUCGR Unreviewed; 145 AA. AC A0A059BD55; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63615.1}; GN ORFNames=EUGRSUZ_G01241 {ECO:0000313|EMBL:KCW63615.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63615.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63615.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 145 AA; 16646 MW; D6A49EB79A566145 CRC64; MTSKFQHAHV QSVPVKFVKQ HLHENKQVAT LRVPVKFVKQ HLHENKQVAT LRYSDRSWPV KLIRSLGQAR GAPALAFSTG WCVFARETDL HAGNVCSFEL IDRDETVFKV SILRGAGNDL IHVNGDEHRK YYLRPLQHRN EIRGS // ID A0A059BDN9_EUCGR Unreviewed; 477 AA. AC A0A059BDN9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW63795.1}; GN ORFNames=EUGRSUZ_G01458 {ECO:0000313|EMBL:KCW63795.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW63795.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW63795.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 441 468 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 477 AA; 53939 MW; 8D4C2EBACE19B366 CRC64; MAIRQDEKPR LLPPPSKVQR GTALKRKEKL LSGRPLGVQR TSCKQQGTSL KRKEKLLCRK PLGLQGTSNK QVICCGLPKL ESPKRERAAD DEYGTASAND ALDRAKRIQS TLSPEYPVMV KHMLPSHVTG GFWLGLPKKF CDLHLPQQDV TITLEDESSK GYETKYLGAK MGLSGGWRGF SIAHNLQEGD ALVFQLVKPT RFKVYIVRRS NFDDVDGALG LLSLDHCLKT GDSENARKTC KISDDDYWKP LTTEDPPQIS QNDNLRACNV LALPVTEQAK SDPGDPVSEV LDGIRFSENT VDFKDVRSIE NFEIIANDLV IDSELSNHFR LKYYELCRSQ KSYLHGRLLE GLNYKLAAGI ISETVNLADA IRASRIVTSM KEFDIWNKTL KAFQDMGMEV GFLRARLERL LELAMRSKRY REAESDRARA EEERCRLEVK LAEVREVISR LDDEIESLRK GSDDLEMTFE EVASAPW // ID A0A059BGF6_EUCGR Unreviewed; 127 AA. AC A0A059BGF6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW64765.1}; GN ORFNames=EUGRSUZ_G02345 {ECO:0000313|EMBL:KCW64765.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW64765.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW64765.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 127 AA; 14349 MW; C00711F791F57DAA CRC64; MKGVLLNFED VGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDTV CFQRSTGPDK QLYIDFKPRG QPPAGPAAPP PPPVQMVRLF GVNIMEVPYC GGGKRMRDVD LLSFECRKKQ QMVVGAL // ID A0A059BIB7_EUCGR Unreviewed; 692 AA. AC A0A059BIB7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_G02838 {ECO:0000313|EMBL:KCW65415.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW65415.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198759; KCW65415.1; -; Genomic_DNA. DR RefSeq; XP_010067307.1; XM_010069005.2. DR GeneID; 104454218; -. DR KEGG; egr:104454218; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 687 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 692 AA; 76328 MW; C0FD24347869E4BA CRC64; MVELALDRFM ISVMDSRKES LKRNPQKCLD SQLWHACAGG MVQMPPVNSK VFYFPQGHAE HAQGTVDFGT SQIPPLILCR LAAIKYMADP ENDEVYAKIT LMPMRSDEYH HLDDDGSLGK DGTENLEKVA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TIVAKDVHGE SWKFRHIYRG TPRRHLLTTG WGNFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGIG GNDNACGWNS ASGNFGGYSM FAREEGSNLM QKGCGGEFRR KVTGESVLQA ATLAAKGQPF EVVYYPRAGT PEFFVRASSV STAMQVQWCS GMRFKMPFET EDASRISWFM GTISSVQVAD PIHWPSSPWR ILQVSWDEPD LLQNVKSVSP WLVELVSNMP SIHLSHFSPP RKKLRTPPNF PILDQIPVPP FPSNPLGPNS PLCFIPDNIP AGIQGARHAQ FLRSSSDLRL NQLHSGLFPV GSHPLNHTSV STRFSRGAFF GAPEDNNNSI SCLLRMGTSE NSSKENFEKK SPHILLFGQL ILVDQQNSES SSGDTTGRCS SEGNQERMSN SSEGSRNNVL YYNGTVESSS DDGFTGIRRD RASDLDLGTG HCKVFMESEN VGRTLDLSVL GSYDELYRNL RDMFGINGSE RLSKVLYSDA AGAIKNAGDE PFSDFLKTAK RLTIPAGYAM KI // ID A0A059BJD0_EUCGR Unreviewed; 378 AA. AC A0A059BJD0; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW66218.1}; GN ORFNames=EUGRSUZ_F00044 {ECO:0000313|EMBL:KCW66218.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW66218.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW66218.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 42752 MW; C67CF913B6ED640F CRC64; MEGTCKECKS WEEEIYWTHF HSIHFCQFLQ GDFHQQLAIP KKFAENLRSK LPENVVLKGP SGATWKVGTV ADDENLLFKH GWQDFVKDHA LEKNDILVFR YNGESSFNVL VFNQHSLCEK EAAYFHKRCS HNPADRECGT KRKLGDSSVE AMHTPVSHDV KRTLTEDPRE DRTVTVADRN ILSQAKASEN LIEAGASGKP RNKKATPKKK LSVAFDCLEE KPDSTPKSLF IGSRGSPVYV SNRRPVTEEE ESSAFKLARA AASSDSFLVV MRPTHVYKRF YLSIPTDWAT THMDRRNQDV ILRVGEGTWH ARYRLTGRGS GGLSSGWKNF TLENNLEQSD VCVFNLADSI SKNIILDVTI FRVVEDIVPP TLVNSFSV // ID A0A059BJJ9_EUCGR Unreviewed; 360 AA. AC A0A059BJJ9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW66219.1}; GN ORFNames=EUGRSUZ_F00044 {ECO:0000313|EMBL:KCW66219.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW66219.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW66219.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40646 MW; 35A6C9096989D26D CRC64; MEGTCKECKS WEEEIYWTHF HSIHFCQFLQ GDFHQQLGPS GATWKVGTVA DDENLLFKHG WQDFVKDHAL EKNDILVFRY NGESSFNVLV FNQHSLCEKE AAYFHKRCSH NPADRECGTK RKLGDSSVEA MHTPVSHDVK RTLTEDPRED RTVTVADRNI LSQAKASENL IEAGASGKPR NKKATPKKKL SVAFDCLEEK PAAQDSTPKS LFIGSRGSPV YVSNRRPVTE EEESSAFKLA RAAASSDSFL VVMRPTHVYK RFYLSIPTDW ATTHMDRRNQ DVILRVGEGT WHARYRLTGR GSGGLSSGWK NFTLENNLEQ SDVCVFNLAD SISKNIILDV TIFRVVEDIV PPTLVNSFSV // ID A0A059BR81_EUCGR Unreviewed; 839 AA. AC A0A059BR81; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_F02090 {ECO:0000313|EMBL:KCW68434.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW68434.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW68434.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 814 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 51 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 839 AA; 92274 MW; 485D5EAEFD84C264 CRC64; MCQVHNVTLH ADRETDEIYA QMCLQPVNSE KDVFPVPDFG LRPSKHPSEF FCKTLTASDT STHGGFSVPR RAAEKLFPPL DFAMQPPTQE LVVRDLHDNT WTFRHIYRGQ PKRHLLTTGW SLFVGAKRLR AGDSVLFIRD EKSQLMVGVR RANRQQTTLP SSVLSTDSMH IGILAAAAHA ATSRSSFTIF YNPRACPSEF VIPLVKYRKA VYGTRISVGM RFGMMFETEE SGKRRYMGTI IGISDLDPLR WPGSKWRNLQ VEWDEPGCGD KQNRVSPWDI ETPESLFIFP SLTSALKRPL HTGFMGGETE WGSLVKRPLI QVPEGGGMNL LPFASVPNLC SEQLIKMIMK PQPQIVNHPS LPQDNNPKFI PGHEVNTMQG TVNQKPQAFN TESAIPPKLI YPHLCPDQSS AMGLSSEVHV TNKVPPPYKT ENQAPVETKD EKLNVDSHLK KDVLNQVPST STGELPEENI ASGPSSQQNH LNHPIILNQN QGQIQSQACS WPPQPLQIPI ADSNVLHGSS PFVNPDELMF SSTNKSVAAL IRSPGPFSIC GSQDPSATFG DPVGQLPLIS QELWDHQGIN LRFPSQGDQL TPLPEQDPSS LCGISNSVCL KDLSAESNNQ SGIYSCLNLD ASNGGSSAID PSISSAILDD FCTIKDGPFP NLSDCLVGNF SSSQDVQSQI TSASLADSQA FSRQDFPDNS GGTSSSNVDF DESSILKNST WQQQVAPPMR TYTKVQKAGS VGRSIDVTNF RNYEELLSAI EYMFGLEGLL NDPRGSGWKL VYVDYENDVL LVGDDPWEEF VGCVRCIRIL SPVEVQQMSE EGMKLLNASA GQVVNATTS // ID A0A059BR82_EUCGR Unreviewed; 506 AA. AC A0A059BR82; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW68798.1}; GN ORFNames=EUGRSUZ_F02399 {ECO:0000313|EMBL:KCW68798.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW68798.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW68798.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 506 AA; 57338 MW; 6E1A8ED81F617D49 CRC64; MERDETRWKM PNGKRPHFFE IYSSSVSSRR LKIPDKFVKH MEGWMSGLAL LEGPSGNTWH VELIEENHEL FLNSGWHSFI RDHSIVSGDL LVFRHDGNLH FYVQVFEQSS CEKEAAFHAM CSQDPSSCRQ NGERNGERNE ITYCSNIVYE SHKPKVCACD DKLGRKQDAV TSAQHRGTSI VRETPHDNII LSSKAQVYEE SPDIRNRFSK GDHSSLSTSC HMLKSLSEEE RKVARSFSSH FPYFVRIMKK FNISGSYTLN IPYQFSMEHL PVSKITIVLR NLKGESWTVN SVPTTRVHTS HTFCGGWMAF VRANGIELED VCVFELVRKC EMRVHILGAA QGRPDCQSVK KTLTWLDVRN TATLNAGREN VSKKRKRKST KVSSQIVEKV KRMLQEASSS DMKKHAGAFK GSSNALKTSN GKSAIIVGAS TGTARSSQNT DCLSVMLSLQ EERVARSFAS SFPKFVRIMK RFNVSGSYTL VSIYFGCILS CCTQPHAKKL WYFIVL // ID A0A059BRQ9_EUCGR Unreviewed; 585 AA. AC A0A059BRQ9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW68797.1}; GN ORFNames=EUGRSUZ_F02399 {ECO:0000313|EMBL:KCW68797.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW68797.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|EMBL:KCW68797.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Leaf extractions {ECO:0000313|EMBL:KCW68797.1}; RA Schmutz J., Hayes R., Myburg A., Tuskan G., Grattapaglia D., RA Rokhsar D.S.; RT "The genome of Eucalyptus grandis."; RL Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW68796.1; -; Genomic_DNA. DR EMBL; KK198758; KCW68797.1; -; Genomic_DNA. DR RefSeq; XP_010061801.1; XM_010063499.2. DR GeneID; 104449365; -. DR KEGG; egr:104449365; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 465 561 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 465 561 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 585 AA; 65917 MW; 1330293C9B04D873 CRC64; MERDETRWKM PNGKRPHFFE IYSSSVSSRR LKIPDKFVKH MEGWMSGLAL LEGPSGNTWH VELIEENHEL FLNSGWHSFI RDHSIVSGDL LVFRHDGNLH FYVQVFEQSS CEKEAAFHAM CSQDPSSCRQ NGERNGERNE ITYCSNIVYE SHKPKVCACD DKLGRKQDAV TSAQHRGTSI VRETPHDNII LSSKAQVYEE SPDIRNRFSK GDHSSLSTSC HMLKSLSEEE RKVARSFSSH FPYFVRIMKK FNISGSYTLN IPYQFSMEHL PVSKITIVLR NLKGESWTVN SVPTTRVHTS HTFCGGWMAF VRANGIELED VCVFELVRKC EMRVHILGAA QGRPDCQSVK KTLTWLDVRN TATLNAGREN VSKKRKRKST KVSSQIVEKV KRMLQEASSS DMKKHAGAFK GSSNALKTSN GKSAIIVGAS TGTARSSQNT DCLSVMLSLQ EERVARSFAS SFPKFVRIMK RFNVSGSYTL KIPHQFSMDH LPICKTEIVL RNLEGESWTV NSVPDSKGRM LHTFCGGWLS FVRGNGIKIG DTCIFELVGK LEMRVHISED GNKEQAQQHG KVDGVLVPLA ASVDN // ID A0A059BSD7_EUCGR Unreviewed; 855 AA. AC A0A059BSD7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW69183.1}; GN ORFNames=EUGRSUZ_F027042 {ECO:0000313|EMBL:KCW69183.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW69183.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|EMBL:KCW69183.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Leaf extractions {ECO:0000313|EMBL:KCW69183.1}; RA Schmutz J., Hayes R., Myburg A., Tuskan G., Grattapaglia D., RA Rokhsar D.S.; RT "The genome of Eucalyptus grandis."; RL Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW69182.1; -; Genomic_DNA. DR EMBL; KK198758; KCW69183.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 249 350 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 521 571 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 249 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 855 AA; 94076 MW; 40DC44E4A083512A CRC64; MLLELLDCGG INCATCAKSS GLLPIASDER PSEFGMINVR TGELQSSTTD NHFDSDEVDK LKLIRLRSST DDSGLGQSLL TQYNDTNRSH EPTNREGVIN TPSALEMGGS CYLLSSKASN GATHASQPDI LKANIAAKEF DDPHARTDLS MTIGVPLGKS YPSLRDHSTT PSLSPQGPKS RHVLHKPPKP AFASGFESNA SVVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEA KLIMGFRKAS TSMMQDSQLA AVSNGNHSSE ALISGGFENV PMISGYSSLL HSFKGSTDPQ LNALSKHWSS ASGDISWQGT EKHGLPRDAF LLPGMSAPER KRARNIGSKS KRLLIDSQDA LELKMTWEEL QDLLRPPSVN PSIVTVEDHE FEEYDEPPVF GKSSIFILRS TGSSKMKREE RRGQEQWVQC DSCGKWRRLP VDVLLPPRWT CAENAWDQSR RLCSAPDGLT PRDLENLLRL TKEFKKRKLA TTVRPALEHE SSGLDALANA AIVGDDGDPG TTSVAATTKH PRHRPGCSCI VCIQPPSGKG KHKPTCNCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRK QLWGSKDEIE VDSTSAHRSS HHNPSENESR IGNELESQSQ TTNSANTFAE TGKGQINLNC QLDLNCQPDR NEDLKLGSSQ TSMMNLLRVA SQPLETYLKQ NGLASLVSEQ QASPAGHVQL QGATTDNEGQ PSEDHCADSE IQEMALEKDD TDEKDSTPDQ GEGDP // ID A0A059BSX9_EUCGR Unreviewed; 229 AA. AC A0A059BSX9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW68760.1}; GN ORFNames=EUGRSUZ_F02358 {ECO:0000313|EMBL:KCW68760.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW68760.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW68760.1; -; Genomic_DNA. DR RefSeq; XP_010061766.1; XM_010063464.2. DR GeneID; 104449338; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 229 AA; 25829 MW; 8EF1FA528C86D63F CRC64; MVAAKPKESY EECRRKRLEE NKKRMEALNL PQLSQSLRSS SSSPNSTPMK QSKPRTVEKR VVVVRRSSRV ANMPAPVYRE VVIDRVAVPR RIFKRRDPLN LVYASAEARE YALEKAEQLQ STLEPQYPTL VKSMLPSHVS GGFWLGLSVQ FCKSSLPKND GVITLVDEDG EEFPTIYLAR KTGLSGGWKG FSVAHELTDG DAVVFQLIKP TTMKVYIIRV NGFDKSEEP // ID A0A059BT18_EUCGR Unreviewed; 508 AA. AC A0A059BT18; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW68795.1}; GN ORFNames=EUGRSUZ_F02399 {ECO:0000313|EMBL:KCW68795.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW68795.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW68795.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 508 AA; 57577 MW; 506292579CE9081A CRC64; MERDETRWKM PNGKRPHFFE IYSSSVSSRR LKIPDKFVKH MEGWMSGLAL LEGPSGNTWH VELIEENHEL FLNSGWHSFI RDHSIVSGDL LVFRHDGNLH FYVQVFEQSS CEKEAAFHAM CSQDPSSCRQ NGERNGERNE ITYCSNIVYE SHKPKVCACD DKLGRKQDAV TSAQHRGTSI VRETPHDNII LSSKAQVYEE SPDIRNRFSK GDHSSLSTSC HMLKSLSEEE RKVARSFSSH FPYFVRIMKK FNISGSYTLN IPYQFSMEHL PVSKITIVLR NLKGESWTVN SVPTTRVHTS HTFCGGWMAF VRANGIELED VCVFELVRKC EMRVHILGAA QGRPDCQSVK KTLTWLDVRN TATLNAGREN VSKKRKRKST KVSSQIVEKV KRMLQEASSS DMKKHAGAFK GSSNALKTSN GKSAIIVGAS TGTARSSQNT DCLSVMLSLQ EERVARSFAS SFPKFVRIMK RFNVSGSYTL ELVTFLCKWA LHVLCKSEYI SSSLKEML // ID A0A059BTA4_EUCGR Unreviewed; 845 AA. AC A0A059BTA4; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW69181.1}; GN ORFNames=EUGRSUZ_F027042 {ECO:0000313|EMBL:KCW69181.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW69181.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW69181.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 249 350 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 561 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 249 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 845 AA; 92788 MW; DBD63B67435C368C CRC64; MLLELLDCGG INCATCAKSS GLLPIASDER PSEFGMINVR TGELQSSTTD NHFDSDEVDK LKLIRLRSST DDSGLGQSLL TQYNDTNRSH EPTNREGVIN TPSALEMGGS CYLLSSKASN GATHASQPDI LKANIAAKEF DDPHARTDLS MTIGVPLGKS YPSLRDHSTT PSLSPQGPKS RHVLHKPPKP AFASGFESNA SVVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEA KLIMGFRKAS TSMMQDSQLA AVSNGNHSSE ALISGGFENV PMISGYSSLL HSFKGSTDPQ LNALSKHWSS ASGDISWQGT EKHGLPRDAF LLPGMSAPER KRARNIGSKS KRLLIDSQDA LELKMTWEEL QDLLRPPSVN PSIVTVEDHE FEEYDEPPVF GKSSIFILRS TGGQEQWVQC DSCGKWRRLP VDVLLPPRWT CAENAWDQSR RLCSAPDGLT PRDLENLLRL TKEFKKRKLA TTVRPALEHE SSGLDALANA AIVGDDGDPG TTSVAATTKH PRHRPGCSCI VCIQPPSGKG KHKPTCNCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRK QLWGSKDEIE VDSTSAHRSS HHNPSENESR IGNELESQSQ TTNSANTFAE TGKGQINLNC QLDLNCQPDR NEDLKLGSSQ TSMMNLLRVA SQPLETYLKQ NGLASLVSEQ QASPAGHVQL QGATTDNEGQ PSEDHCADSE IQEMALEKDD TDEKDSTPDQ GEGDP // ID A0A059BYJ5_EUCGR Unreviewed; 545 AA. AC A0A059BYJ5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_F04380 {ECO:0000313|EMBL:KCW71293.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW71293.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198758; KCW71293.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KCW71293.1}. SQ SEQUENCE 545 AA; 59334 MW; 30A0D877EC9FF7F7 CRC64; IPPANSRVYY FPQGHLEQSP AAAAAAPAPI LSPLAVSRTF VPCLVGAVHY FADPLTDEVI AKFLLRPVVH PGAPLQPESP ARAGNEPEEK IVSFAKTLTP SDANNGGGFS VPRFCADTIF PPLDFNADPP VQLLSVRDVH GAVWNFRHIY RGTPRRHLLT TGWSKFVNNK KLVAGDSVVF MKNSKGDMFV GIRRAVRNSG VDCARWREQI GGGRLKVEEE SGLRDGFSRN GRGRVSMEVV VNAVETAARG LPFEVVYYPR AESSDFVVKA ERVEEALKSL WTAGMRIKMA VEAEDCSRMT WHHGVISSVG VNENGLWRGS PWRMLQVTWD EPEAMQDKRS VNPWQVESIG PGSPLDSVYP PVKKLRVPLR SALGTEGESG HFFDMAGFTN PMVPYSSSFF NYNTPIGMQG ARQDASRAFG LVNYVDENPP MYTCNIFGNN VVPKPKPICT DLNIGSSASE TLSTDSPSSW HSFGLEISGN QQCNTSKIGG VSSIQLFGKT IHAMKPAESN LDGVVSPSDD GSKRPGEAGY VSIPPDLSLT CLKAR // ID A0A059C1Z3_EUCGR Unreviewed; 621 AA. AC A0A059C1Z3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_E00888 {ECO:0000313|EMBL:KCW72443.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW72443.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW72443.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 621 AA; 68907 MW; AD1499C1840FBEB6 CRC64; MMMNRAEGRG GGGGDDLYTE LWKACAGPLV DVPRHGDRVY YFPQGHMEQL EASTNQELNQ RIPLFNLTSK ILCQVVNVQL LAEQETDEVY AQITLIPAGN LMEPTSPDPV SAETPRTRVH SFCKVLTASD TSTHGGFSVL RKHATECLPP LDMKQATPTQ ELVAKDLHGY EWKFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GDNGELRVGV KRVARQQSSM PSSVISSQSM HLGVLATASH AVTTQTLFVV YYKPRTSQFI ISLNKYLEAL NNKFTVGMRF KMRFEGEDSP ERRFSGTIVG VEDFSPQWDN SSWRSLKVHW DEHASIPRPD RVSPWEIEPF VASVPANIPQ STTKNKRPRP SSEVPADATA APAIWNSGYT QTHDLKQLRV TDEGKSSDHF MWNYKMADVN SSSSSITRVQ TEGGWLPSPC LSVSPNILPD AVDDSKSVSA LPVPCRHPIA HPSSLNNELM PNPAEDGKKV EPTSSCRLFG IDLINHTLSS PPSDKGPFQS MCVSTATTEG HVQMALSTAD SDQKCDIQKA SEEVKQRQMQ NLGKEGQTKQ ICSTRSRTKV CSNARNGCRS CCGLDHVGRV QSIDERARRD VRPQRTASVS R // ID A0A059C275_EUCGR Unreviewed; 687 AA. AC A0A059C275; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_E00888 {ECO:0000313|EMBL:KCW72442.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW72442.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW72442.1; -; Genomic_DNA. DR RefSeq; XP_010055888.1; XM_010057586.2. DR GeneID; 104444009; -. DR KEGG; egr:104444009; -. DR KO; K14486; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 575 656 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 687 AA; 76456 MW; D01D9D522B5181E8 CRC64; MMMNRAEGRG GGGGDDLYTE LWKACAGPLV DVPRHGDRVY YFPQGHMEQL EASTNQELNQ RIPLFNLTSK ILCQVVNVQL LAEQETDEVY AQITLIPAGN LMEPTSPDPV SAETPRTRVH SFCKVLTASD TSTHGGFSVL RKHATECLPP LDMKQATPTQ ELVAKDLHGY EWKFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GDNGELRVGV KRVARQQSSM PSSVISSQSM HLGVLATASH AVTTQTLFVV YYKPRTSQFI ISLNKYLEAL NNKFTVGMRF KMRFEGEDSP ERRFSGTIVG VEDFSPQWDN SSWRSLKVHW DEHASIPRPD RVSPWEIEPF VASVPANIPQ STTKNKRPRP SSEVPADATA APAIWNSGYT QTHDLKQLRV TDEGKSSDHF MWNYKMADVN SSSSSITRVQ TEGGWLPSPC LSVSPNILPD AVDDSKSVSA LPVPCRHPIA HPSSLNNELM PNPAEDGKKV EPTSSCRLFG IDLINHTLSS PPSDKGPFQS MCVSTATTEG HVQMALSTAD SDQKCDIQKA SEEVKQRQMQ NLGKEGQTKQ ICSTRSRTKV QMQGMAVGRA VDLTMLEGYS QLMNELEEMF DLKGQLQSRD KWEIVFTDDE GDMMLMGDDP WPEFCNMVRR IFICSSQDVK KMSAKSKLPV SSVQEEGTVI SSESADN // ID A0A059C2E3_EUCGR Unreviewed; 336 AA. AC A0A059C2E3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW72633.1}; GN ORFNames=EUGRSUZ_E01093 {ECO:0000313|EMBL:KCW72633.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW72633.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW72633.1; -; Genomic_DNA. DR RefSeq; XP_010056052.1; XM_010057750.2. DR GeneID; 104444140; -. DR KEGG; egr:104444140; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 37268 MW; EE630EFD4A6A071F CRC64; MIREFMDLSP RNDGYITQES YTPCAEIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DAGDIVSFQR GAGESGKDRL YIDWRRRPNP PEHTSVFPNL PLPHHQLSFH RSVPWGLSSL VGSAVTSSTT FLGNPYQSYG STSNHPYGHG DIINSSNYGG SSVFLLRSSV APRQLGIMEN MEVQGGGGGG GGLLGARRGV EPVVFDSVPV VHGNKAAAKK FRLFGVNMEC PDSESSEPST SSLQPPQISA TTSQYPSHEL RVYDGWPLLN VPSKDKASSM SLDLEI // ID A0A059C4D8_EUCGR Unreviewed; 337 AA. AC A0A059C4D8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73036.1}; GN ORFNames=EUGRSUZ_E01478 {ECO:0000313|EMBL:KCW73036.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73036.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73036.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38034 MW; 5CEADAEB0C138D9E CRC64; MERAKAVQSS LSPQFPSFVK RKLPSHVTRV FWMGLPKQFC DPHLLKEDAT IELEDESGDV YETKYLWAKT GLSGGWRGFS IAHSIMEGNA VVFQLVMPTQ FKGFRLQMIL YSDTSLFMTE LAPDNIREDG LKIRSTHYRS VADHPKTNSD DRVSNGLHGI QFSESVIDFG GVPSIEDFSI ITKGLVIDSE LSKHLRGKFY ELCRSRKTFL HARLLEGLHC KLAAGIISET VNIADAIRGA RITTSTEDFS VWATTLKAFE DLGMDVGFLR ARLGRLISLS LALKRCKEPK SARARAAEER SRFEAELTEE PGLERDGLDI EDAWRRTAHE TSYSWKL // ID A0A059C4K6_EUCGR Unreviewed; 211 AA. AC A0A059C4K6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73292.1}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_E01753 {ECO:0000313|EMBL:KCW73292.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73292.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73292.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 97 190 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 97 190 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KCW73292.1}. SQ SEQUENCE 211 AA; 23342 MW; 01297C95DB1F66E3 CRC64; QHASSLHVPS STLRSPRSAR RCSSSSSDSD GDPPRIPETE AEDEAEDEAP LAPRSSSPST ARTPVLDPAG VLSLPLRGNM SGGQEDDYWP LSGKPFFDVI LTKSHVQPRY NLFIPSRMHS LLPSQDTQTV LAYKDKTWNV MLYTKTKRFD YSWKQFVDDN HLKAGDACVF ELMECLSTKV TFKVQILRSD FPAELLGKIS GETAGAPIVI E // ID A0A059C4T5_EUCGR Unreviewed; 159 AA. AC A0A059C4T5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73453.1}; GN ORFNames=EUGRSUZ_E01933 {ECO:0000313|EMBL:KCW73453.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73453.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73453.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 150 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 159 AA; 17688 MW; 4CF088F29BF99B9D CRC64; MEESSSAQSR LIHFIPFLLS SLGSSSSPPI QNASTDKCKI KKKLTKSDLS DHLSRLILPG RLVEAHVLPL MGEAMAGQVK SGGGMKVVMR DADTRDEHKL VFCRWLSSRS YVLKCGWTNL FVKRRGLEVG DEIGIYWDKS KFHFTVHRKV GRGTSNAVA // ID A0A059C4Z4_EUCGR Unreviewed; 189 AA. AC A0A059C4Z4; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73528.1}; GN ORFNames=EUGRSUZ_E02045 {ECO:0000313|EMBL:KCW73528.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73528.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73528.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 188 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 189 AA; 21452 MW; 7D904399FF9CAA42 CRC64; MATKGPENTK EVGDPHQEIV PAQPKRKSMV SLTNAEAFIA EKKAKSKRTQ KGKKEASGCD PEEVSTELTL LFDPYKIKKR LTQSDLSHLS RFLIGRDFVK SHFLRWMSEE MVRQVESGKG ADVIVRDMDT CSEHRLVFVF WASSGCYVLK GGWIKEFVKR RGLAVGDEVG MYWEPSASKF HFSLLHKAN // ID A0A059C4Z6_EUCGR Unreviewed; 161 AA. AC A0A059C4Z6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73533.1}; GN ORFNames=EUGRSUZ_E02051 {ECO:0000313|EMBL:KCW73533.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73533.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73533.1; -; Genomic_DNA. DR RefSeq; XP_010058724.1; XM_010060422.1. DR GeneID; 104446583; -. DR KEGG; egr:104446583; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 160 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 161 AA; 18414 MW; 76B8D4B3C134E3B9 CRC64; MASLTNAESF IVEKKAKCKR TQKGKKEASG CGAEEVCTEL TLLFDPYKIK KRLTQSDLGH LSRLLIRRDF VKSHFLRWMN EETVRQVESS KGADVIVRDM DTCSEHRMVF VFWASSGSHV FKGGWIKEFV KRRGLAVGDE VGIYWEPSAS KFHFSLLHKA N // ID A0A059C500_EUCGR Unreviewed; 257 AA. AC A0A059C500; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73538.1}; GN ORFNames=EUGRSUZ_E02057 {ECO:0000313|EMBL:KCW73538.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73538.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73538.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 256 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 257 AA; 28767 MW; 4B7930C32E4529F4 CRC64; MGSSSSRVSH LQDHEQKPVG DHLRSEVHSP PPSMDSSSCL SSLHDQEKDR DEGARGTSFA GVVVSREFFS VAPNRTTKEV GGPSQEIVPA QLKRKSVALP TDAETLIVEK KAKCKRTQKG KKEASGCDAE EVSTELTLLF DPYKIKKRLT QSDLGHLSRL LIRREFVKSH FLRWMNEETV RQVESGKGAD VIVTDMDTCS EHRLVFVFWA SSGCYVLKGG WIKEFVKRRG LVAGDEVGIY WDPFASKFHF SVLRKAN // ID A0A059C513_EUCGR Unreviewed; 148 AA. AC A0A059C513; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73558.1}; GN ORFNames=EUGRSUZ_E02078 {ECO:0000313|EMBL:KCW73558.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73558.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73558.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 141 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 148 AA; 16874 MW; 13C9710F1BA2D1A8 CRC64; MKTPESSTSD VAHFVCAERV DVSTDLALYE DPWKIRKKLT GSDLSPLSRL LLPAGCLQTH VFPQMDKKML RQVKSEEGMP VVGKDVATGR KHQFVFRCWK STGSYVLNGG WTKEFVEEKR LKVGDEIEMV WVMSSRMFHF KVLHRAAA // ID A0A059C547_EUCGR Unreviewed; 211 AA. AC A0A059C547; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73457.1}; GN ORFNames=EUGRSUZ_E01934 {ECO:0000313|EMBL:KCW73454.1}, GN EUGRSUZ_E01939 {ECO:0000313|EMBL:KCW73457.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73457.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|EMBL:KCW73457.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Leaf extractions {ECO:0000313|EMBL:KCW73457.1}; RA Schmutz J., Hayes R., Myburg A., Tuskan G., Grattapaglia D., RA Rokhsar D.S.; RT "The genome of Eucalyptus grandis."; RL Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73454.1; -; Genomic_DNA. DR EMBL; KK198757; KCW73457.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 210 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 211 AA; 23284 MW; 65A95EBF4B8742FF CRC64; MTGSSPAPAP LIDFLGSPGN FSSSPIQNAD IVTRPPNPHS VPTQTGAMTG SSSDPPPLID FLGSPRNFPS SPIQNADIVT HQEERNRSSD VSTELTLRLY PGEITKKLTK SDVDHSARLL LPLDCLKAIL RDMDDEMRRQ VESTEGMGVG VVDLKTGNEY QLVFRRWGSS RSYVLNSGWT KLFVKRQGLK VGDEVGMCWD KGSRKFYFKV L // ID A0A059C5A2_EUCGR Unreviewed; 284 AA. AC A0A059C5A2; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73527.1}; GN ORFNames=EUGRSUZ_E02044 {ECO:0000313|EMBL:KCW73527.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73527.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73527.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 283 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 284 AA; 31796 MW; D5798C8C4567220E CRC64; MEHVDLLAPK TPPISEVPRG DVHSPLSMDS LSSRDSCPQD HEKKKPIGDH LRSKVHSPES MDSSSCLSYL QDQEKNGDEG AAGISSAGVV ASREFFLLVP DQNTKEVGHP RQEIVPAQLK RKSMASLADP ETFIVEKTAK YKRTQRGKEE ASGCDPEEVS TELTLLFDPY KIKKRLTQSD LGHLSRLLIG RDFVKSHFLR WMSEETVRQV ESSKGADVIV RDMDTCSEHR LVFVFWASSG SYVLKGGWIK EFVKRRGLAA GDEVGIYWEP SASKFHFSLL HKAN // ID A0A059C5A7_EUCGR Unreviewed; 163 AA. AC A0A059C5A7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73532.1}; GN ORFNames=EUGRSUZ_E02050 {ECO:0000313|EMBL:KCW73532.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73532.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73532.1; -; Genomic_DNA. DR RefSeq; XP_018729963.1; XM_018874418.1. DR GeneID; 108959965; -. DR KEGG; egr:108959965; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 160 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 163 AA; 18449 MW; AD4FA919D720A846 CRC64; MASPTDAETL IVEKKAKCQR TQKGKKEASG CDAEEVSTEL TLLFDPYKIK KRLTQSDLGH LSRLLIGRDF VKSHFLRWMS EETVRQVESG RGADVIVRDL DTCSEHRLVF VFWASSGSYV LKGGWIKEFV KRRGLAAGDE VGIYWEPSAS EFHFSLLHRA NQA // ID A0A059C5M0_EUCGR Unreviewed; 161 AA. AC A0A059C5M0; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73529.1}; GN ORFNames=EUGRSUZ_E02046 {ECO:0000313|EMBL:KCW73529.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73529.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73529.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 155 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 161 AA; 18309 MW; AED456B167379E97 CRC64; MASLTNAESL IAEKKAKCKR TQKGKKEASG CDAEEVSTEL TLVFDPYKVK KRLTQSDLGH LSRLLIGRDL VKSHFLRWMS EETVRQVESG KGADVIVRDM DTGSEHRLVF VFWASSGCYA LKGGWIKEFV KRRALEVGDE VGIYWDPSER KFHFSLLHMV D // ID A0A059C5N5_EUCGR Unreviewed; 148 AA. AC A0A059C5N5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73461.1}; GN ORFNames=EUGRSUZ_E01947 {ECO:0000313|EMBL:KCW73461.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73461.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73461.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 127 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 148 AA; 16994 MW; A0856D996D63CB03 CRC64; MKTPESSTSD VAHCVCAERV DVSTELVLQN DPWMIMKELT ESDLSHLSWL LLPGGCLKTH VFPQMDEEML RKVKSKEGMQ VVGIDVDTGW KHWFVFRCWG SSGSYVLNGG WTKEFVEKKR LKVGDEIGMV WFMSSRMFYF KVLHRAAA // ID A0A059C5S6_EUCGR Unreviewed; 273 AA. AC A0A059C5S6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73516.1}; GN ORFNames=EUGRSUZ_E02029 {ECO:0000313|EMBL:KCW73516.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73516.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73516.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 272 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 273 AA; 30262 MW; F12455E8F67F0EE4 CRC64; MSSCLSIFSP TLSSSLSLSL SEFLCTAMPS VVPPKHFPVS STEKPMELID FLGPASPPIG DVQKSRKEGA GDISPAIVVA AREFFPPAPD QNMKEVRDPL QEIAPTQRKR KSKASLANAE TLIVEKKAKY KRTQKGKKED SGCDTEEVST ELALLFDPYK IKKKLKQSDL GHLSRLLIGR DFVTSHLLRW MSEEMVRQIE GGKGADVIVR DVDTCSEHRL VFVLWASSGS YVLKGGWIKE FVKRRGLVAG DEVGIYWDPS ASKFHFSLLH KAN // ID A0A059C5T8_EUCGR Unreviewed; 226 AA. AC A0A059C5T8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73531.1}; GN ORFNames=EUGRSUZ_E02048 {ECO:0000313|EMBL:KCW73531.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73531.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73531.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 225 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 226 AA; 25355 MW; 7453EC89B6807035 CRC64; MDSSSCSCLY YLHNQEKNGD EGVRGISSAS VVVDREFFPL APDQNTKEVG GPRQEVVPAQ PKRKSMASLT NAESLIAEKK AKCKRTQKGK KEASGCGAEE VCTELTLLFD PYKIKKRLTQ SDLGHLSRLL IRRDFVKSHF LRWMNEETVR QVESGKGADV IVRDMDTCSE HRLVFVFWAS SGSHVLKGGW IKEFVKRRGL AAGDEVGIYW DAIASKFHFS VLRKAN // ID A0A059C5U3_EUCGR Unreviewed; 113 AA. AC A0A059C5U3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73536.1}; GN ORFNames=EUGRSUZ_E02054 {ECO:0000313|EMBL:KCW73536.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73536.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73536.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 96 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 113 AA; 12974 MW; 76C2A553844ADE6B CRC64; MEKRLTHSDL GHLSRLLIGQ DLVKSHFLRW MSEETVRQVE SGQGADVIVR DMDTSSEHRL VFVFWASSGS YVLKGGWIKE FVKRRGLATG DEVGIYWEPI ASEFHFSLLH RAN // ID A0A059C5U6_EUCGR Unreviewed; 163 AA. AC A0A059C5U6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73541.1}; GN ORFNames=EUGRSUZ_E02060 {ECO:0000313|EMBL:KCW73541.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73541.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73541.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 160 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 163 AA; 18525 MW; 9172932A9820C891 CRC64; MASLTDAETL IVEKKAKCQR TQKGKKEASG CDTEEVSTEL TLLFDPYKIK KRLTQSDLGH LSRLLIGRDF VKSHFLRWMN EETVRQVESG EGADVIVRDL DTCSEHRLVF VFWASSGSYV LKGGWIKEFV KRRGLATGDE VGIYWEPSAS EFHFSLLHRA NQA // ID A0A059C6H8_EUCGR Unreviewed; 161 AA. AC A0A059C6H8; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73530.1}; GN ORFNames=EUGRSUZ_E02047 {ECO:0000313|EMBL:KCW73530.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73530.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73530.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 155 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 161 AA; 18175 MW; AC6FFBB04754FCD5 CRC64; MASLTDAETL IVEKKAKCQR TQKGKKEASG CDAEEVSTEL ALLFDPYKIK KRLTQSDLGH LSRLLIGRDL VKSHFLRWMS EETVRQVESG EGADVIVRDL DTCSEHRLVF VFWASSGSYV LKGGWIKEFV KRRGLAAGDE VGIYWEPSAS EFHFSLLHRA N // ID A0A059C6I2_EUCGR Unreviewed; 166 AA. AC A0A059C6I2; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW73535.1}; GN ORFNames=EUGRSUZ_E02053 {ECO:0000313|EMBL:KCW73535.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW73535.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW73535.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 155 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 166 AA; 18929 MW; 1B23398D7DE68020 CRC64; MASLTNAESL IAEKKAKCKR TQKGKKEASG CDAEEVSTEL TLLFDPYKVK KRLTQSDLGH LSRLLIGRDL VKSHFLRWMN EETVRQVENG KGADVIVRDM DTGSEHRLVF VFWASSGCYA LKGGWIKEFV KRRALEVGDE VGIYWDPSER KFHFSLLHMI VLSPQQ // ID A0A059C8P9_EUCGR Unreviewed; 521 AA. AC A0A059C8P9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW74742.1}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_E034652 {ECO:0000313|EMBL:KCW74742.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW74742.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW74742.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 256 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KCW74742.1}. SQ SEQUENCE 521 AA; 57387 MW; 35DD8EA3E1DAFB4A CRC64; AYFPSISQPE GLPLKVQDAK GSEWIFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT FSRLEPEGKL VMGFRKASTA PPSDQENETA KSNSGITVQD AELADPSSWS KVDKSGYIAK EVLGAKSALP RKRKSSTLGS KSKRLRIENE DVIELKLTWE EAQGLLRPPP PPNHIPSVVV IEGFEFEEYE DAPVLGKPTV FRTDTVGKKI QWAQCEDCLK WRKLPADALL PSKWTCADNS WDPERSSCSA DQDLTAEELE DMLSNNNPAP SKKAKAPKQE NMEALEGLDT LANLAILGEG EVLPSSSSSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK PTCTCNVCLT VKRRFRTLML RREKKQSEKE GEGSRKKLQH QNLSLAEKSP EDDPSQCNNN IANGSPSQKK VGNDGSDDEM NRVKSSGSPF KGQIDLNIQP EREEELSPGS DSGGMVKLQH VAPQKYPRQR VLTQDSFRNS TGDPAVVDLD GGERLVSDTV ESGQQEVNEE RAKALASTVH K // ID A0A059C912_EUCGR Unreviewed; 315 AA. AC A0A059C912; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW74744.1}; GN ORFNames=EUGRSUZ_E03467 {ECO:0000313|EMBL:KCW74744.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW74744.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW74744.1; -; Genomic_DNA. DR RefSeq; XP_010057548.1; XM_010059246.2. DR GeneID; 104445360; -. DR KEGG; egr:104445360; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 34547 MW; 9AF9A56838117FEC CRC64; MDDFSDRPMN KKIKLGPDEE LENGIAGPNS DDHLNPCEIN PQQSTSEKED PSTPPCGLAV PHASGDEPNG HIGLVGPHFR PAPPPTIAKH FYGSTLSDTN SSGESRTRNG RPRGDARGRS QLLPRYWPRI TDQELQQISG DSNSVITPLF EQTLSASDAG EIERIVVPKK CAEAHFPSIS QPEGLPLKVQ NAKGLEWIFQ FKFQPNNNSR TYFLEGVTPC IQSMQLQAGD IVTFSRLEPE GKLVMRPSTA PPSDQKGRDG EEPREEEDAS ISEQRPEQQL GESFEQSDAH LQGNMRKGGA EAEAGEEDVE EANTI // ID A0A059CBK6_EUCGR Unreviewed; 229 AA. AC A0A059CBK6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 12-APR-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW75624.1}; GN ORFNames=EUGRSUZ_E04365 {ECO:0000313|EMBL:KCW75624.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75624.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198757; KCW75624.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 228 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 229 AA; 25196 MW; D4716DC1A66B6BC2 CRC64; MKLIDFLGPA SPPIGSDVPK SQDEGAGDIS PAIVVAAREF FPLAPDQNTK EVGDPLRGIA PTQRKRKSVA SLADAESLIV EKAVKYKRTR KGKGEDSGCD TEGVSTELVL LFDPYKIKKK LKQSDPGHLS RLLIGRDFVT SHLLRWMSEE MVRQVEGGKG ADVIVRDVDT CSEHRLVFVF WASSGSYVLK GGWIKEFVKR RGLAAGDEVG IYWDPSASKF HFSLLHKAN // ID A0A059CBQ7_EUCGR Unreviewed; 897 AA. AC A0A059CBQ7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_D00264 {ECO:0000313|EMBL:KCW75878.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75878.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75878.1; -; Genomic_DNA. DR RefSeq; XP_010052021.1; XM_010053719.2. DR GeneID; 104440759; -. DR KEGG; egr:104440759; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 761 845 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 897 AA; 99040 MW; 2A7BCA4503DD3745 CRC64; MRLSSAGFSP QAQEGEKRVL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNQE VDAQIPNYPS LPPQLVCQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGSPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSL QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGVRRANR PQTVMPSSVL SCDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIC DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSYGLRDDD MGIASPSMWL RDGDRGMQSL NFQGMGLTPW LQPRLDASML GLQPDMYQAM AAAALQEMRA VDHSKLATAS LMPVQHVQNI TSASASLMPS QMLISTQPQQ SLLQGSRESP HHSVSQDQVQ SHLLQRQLQH QNSFTNQQQP QQEQLRQQLV NQEQIPSASS PSQFALASQS HTASLQTMPS LCQQLSFSDS TGNPVTSPVV SPLQTLLGSF TQDGSTHHLN LPRTNSSVSP SSWPSKRAAI ESLVPSGPSQ RVLPQMDQLG PPQNNLSPSS VSLPPFPGRE CLDQEVTDVQ SHLLFGVNLE PSSLLMQNGI SSLRAVGSES DSTSMPFPSN YISNSGADFA PNPSVAPPGG IDDSGFLQSP ENLNQVNVPT RTFVKVYKSG SFGRSLDITK FSSYNELRSE LARMFSLEGQ LEDPVRSGWQ LVFVDRENDS LLLGDGPWPE FVNSVWCIKI LSPQEVQQMG KQDLELLNSI PVQRHSNGGC DEFTNRQDSR TINSGIPSVG SLDYGTL // ID A0A059CBR1_EUCGR Unreviewed; 450 AA. AC A0A059CBR1; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW75883.1}; GN ORFNames=EUGRSUZ_D00268 {ECO:0000313|EMBL:KCW75883.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75883.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75883.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 346 442 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 346 442 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 450 AA; 51556 MW; 80A228D4DF2C37A0 CRC64; MGRRSRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY EGDSVFHVII FDKSASEIDY PSSIESDMSS PEEEFLSRKE EDVVEIKDSE GSVPCSQPSS YRSSREYGVP SHLAAFELAS EFKSDHPFFK VVIQPTYVRK SLTIPREFFI KHVQKNKQIA TLRYSDRSWQ VKLRTHEHTA CLSTGWSSFA RENDLLVGDC CVFELIDRDD IVFRVSIFRS DGVSPAAAAR RRRRQIQTEQ SQCQEHPSES AFHTSPCLSP VIAHERACEF ESEYPFCNVV ILPYQIERQT VTIPWQFIKT YIQKDHQMVN VVYLGRSFEV KLLVYRHLHI AILGIGWSAL AREAHLREGD VCMFELLDRD NIVLRVSVFS SANKEVISIE // ID A0A059CBR5_EUCGR Unreviewed; 327 AA. AC A0A059CBR5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW75689.1}; GN ORFNames=EUGRSUZ_D00053 {ECO:0000313|EMBL:KCW75689.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75689.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75689.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 119 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 185 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 119 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 185 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 36612 MW; 0AC5C00FF1B985F6 CRC64; MDGNIICIDE LSSTSDSNVT PLPSKSWQPP TPPQSLCRLG SGTSVTLDCE GGIKAESRKL NPSKYKGVVP QPNGRWGAQI YEKHQRVWIG TFSEEDEAAM AYDIAAKRFR GQEAVTNFNQ SRFPDFSFQA EIVDMLRKHV YYEELEQCKR KYVNANGDGK RMSMTEALGD PSGPGRAVAA CHLLFQKEVT RSDVGKLNRF VIPKQHAEKH FPLHNRSSPT TPKGTLLNFI DGGGKVWRFR YLYWNSSHSY VLTLGWSRFV KEKSLRAGDI ISFHQSAGPE KQFHINYMRR SGLSQARPVH PVQKVRLFGV DIFQVSGTGG GVNCGGR // ID A0A059CBY5_EUCGR Unreviewed; 186 AA. AC A0A059CBY5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW75882.1}; GN ORFNames=EUGRSUZ_D00267 {ECO:0000313|EMBL:KCW75882.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75882.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75882.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 186 AA; 21054 MW; 7E51D851305D8C34 CRC64; MACCRCCCRQ REDERAGPHF FKIILSDTLD SGKLGIPRRF LKKYGNHLSS LAFLKVSLGS NWPIELKKCN NGTVWLQKGW REFMEYYSIG HGHLIVFKYE GDSTFRAIIF DKSTSEIDYS SSSGGSNPGP VFRGPTHPRP LTRLELANKF ESEHPFFKVV MPPSSMKTSL VKFCFDAFVG SVKGQL // ID A0A059CCA7_EUCGR Unreviewed; 829 AA. AC A0A059CCA7; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_D00264 {ECO:0000313|EMBL:KCW75879.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75879.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75879.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 761 829 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 829 AA; 91506 MW; C75FBFDC2D30003A CRC64; MRLSSAGFSP QAQEGEKRVL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNQE VDAQIPNYPS LPPQLVCQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGSPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSL QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGVRRANR PQTVMPSSVL SCDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIC DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSYGLRDDD MGIASPSMWL RDGDRGMQSL NFQGMGLTPW LQPRLDASML GLQPDMYQAM AAAALQEMRA VDHSKLATAS LMPVQHVQNI TSASASLMPS QMLISTQPQQ SLLQGSRESP HHSVSQDQVQ SHLLQRQLQH QNSFTNQQQP QQEQLRQQLV NQEQIPSASS PSQFALASQS HTASLQTMPS LCQQLSFSDS TGNPVTSPVV SPLQTLLGSF TQDGSTHHLN LPRTNSSVSP SSWPSKRAAI ESLVPSGPSQ RVLPQMDQLG PPQNNLSPSS VSLPPFPGRE CLDQEVTDVQ SHLLFGVNLE PSSLLMQNGI SSLRAVGSES DSTSMPFPSN YISNSGADFA PNPSVAPPGG IDDSGFLQSP ENLNQVNVPT RTFVKVYKSG SFGRSLDITK FSSYNELRSE LARMFSLEGQ LEDPVRSGWQ LVFVDRENDS LLLGDGPWP // ID A0A059CCB4_EUCGR Unreviewed; 438 AA. AC A0A059CCB4; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW75884.1}; GN ORFNames=EUGRSUZ_D00268 {ECO:0000313|EMBL:KCW75884.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75884.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75884.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 334 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 334 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 438 AA; 50113 MW; 69A3ECAD9F9803BF CRC64; MGRRSRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY EGDSVFHVII FDKSASEIDY PSSIESDMSS PEEEFLSRKE EDVVEIKDSE GSVPCSQPSS YRSSREYGVP SHLAAFELAS EFKSDHPFFK VVIQPTYVRK SLTIPREFFI KHVQKNKQIA TLRYSDRSWQ VKLRTHEHTA CLSTGWSSFA RENDLLVGDC CVFELIDRDD IVFRVSIFRS DGQIQTEQSQ CQEHPSESAF HTSPCLSPVI AHERACEFES EYPFCNVVIS PSHIKRQTVT IPWQFIKTYI QKDHQMVNVV YLGRSFEVKL LVYRHLHIAI LGIGWSALAR EAHLREGDVC MFELLDRDNI VLRVSVFSSA NKEVISIE // ID A0A059CCI6_EUCGR Unreviewed; 438 AA. AC A0A059CCI6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW75886.1}; GN ORFNames=EUGRSUZ_D00269 {ECO:0000313|EMBL:KCW75886.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75886.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75886.1; -; Genomic_DNA. DR RefSeq; XP_010052032.1; XM_010053730.2. DR GeneID; 104440764; -. DR KEGG; egr:104440764; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 334 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 334 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 438 AA; 50155 MW; 104B04E159E71812 CRC64; MGRRLRHRRR REGGGVEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY KGDSVFHVII FDKSASEIDY PSSIESDMLS PEEEFLSRKE EDVVEIKDSE GSMPCSRPSS YRSSREYGVP SLLAAFELAS EFKSEHPFFK VVVQPTYVRK SLTIPREFFI KHVQKNKQIA TLRYSDRSWQ VKLRSHEHMA CLSIGWSSFA RETGLLLGDC CVFELIDRDD IVFRVSIFRS DGQILTEQSQ CQEHPSESAF HASPCLSPVI AHERACQFES EYPFCNVVIS PSHIKRQTVT IPWQFIRTYI QKDHQMVNVV YLGQSFEVNL RVYQHLHIAI LGVGWSALAR EAHLRKGDVC MFELLDRDNI VLRVSVFSSA NKEVICIE // ID A0A059CD70_EUCGR Unreviewed; 653 AA. AC A0A059CD70; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_D00588 {ECO:0000313|EMBL:KCW76199.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW76199.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW76199.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 653 AA; 71552 MW; 1FF98633965DEFC3 CRC64; MIDLNTVEDD ETPSSGSSPA SSLSSAISAS NINSNPAYPT SSSSSSSSCS PLCLELWHAC AGPLISLPKR GSLVVYFPQG HLEHVSDFPT SVFDLPSQIF CRVVDVKLHA DASTDDVYAQ VSLVPEREQI EHKLREGDNE IDLDEDEIEP AVKSSTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YNQQRPSQEL VAKDLHGLEW RFRHIYRAGQ PRRHLLTTGW SAFVNRKKLV SGDAVLFLRA SNGELRLGVR RAIQVKGASA FPSLCIQTLN QSALMDVPKA VSLGIAFSVY YDPRASSSEF LIPARRFFKS LNQTLAPGMR FKMRFEAEDT AERRHSGLIA NISDMDPVRW PNSKWRCLSV RWDDVEPDRG SRICPWEIEP SGSVSSPIGF MMPGSKRTRF GIPSMKPEYP VPNGIGASDF GESFRFQKVL QGQETFANPP YTRPWFTSGA QGNGAFGVRD GFQMVPSRNG CSALSQGSDN RFGLPVSSVQ VSSPSSVLMF HQPSRKSSNR SSLCNTLPWD EKLSSPMKVS FGGTSPLGLL NEENRLSFPH SSILLPSEGV VSEDMAPPLK SSCRLFGISL TEGRDVSHKE VSMSSSRLNG EPLFGHIGEN FHPKANVSRV VGSNCTRVLD LPPVSDVLFD VAS // ID A0A059CD82_EUCGR Unreviewed; 433 AA. AC A0A059CD82; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW75885.1}; GN ORFNames=EUGRSUZ_D00268 {ECO:0000313|EMBL:KCW75885.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW75885.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW75885.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 368 425 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 368 425 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 49577 MW; E090C5CD220C38A3 CRC64; MGRRSRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY EGDSVFHVII FDKSASEIDY PSSIESDMSS PEEEFLSRKE EDVVEIKDSE GSVPCSQPSS YRSSREYGVP SHLAAFELAS EFKSDHPFFK VVIQPTYVRK SLTIPREFFI KHVQKNKQIA TLRYSDRSWQ VKLRTHEHTA CLSTGWSSFA RENDLLVGDC CVFELIDRDD IVFRVSIFRS DGQIQTEQSQ CQEHPSESAF HTSPCLSPVI AHERACEFES EYPFCNVVIS PSHIKRQTVF IKTYIQKDHQ MVNVVYLGRS FEVNLRVYRH LYIAFLGVGW SALAREAHLR KGDVCMFELL DRDNIVLRVS VFSSANKEVI CIE // ID A0A059CE30_EUCGR Unreviewed; 723 AA. AC A0A059CE30; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_D00588 {ECO:0000313|EMBL:KCW76200.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW76200.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW76200.1; -; Genomic_DNA. DR RefSeq; XP_010052260.1; XM_010053958.2. DR GeneID; 104440981; -. DR KEGG; egr:104440981; -. DR KO; K14486; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 79188 MW; 1B435E99BAA44F0C CRC64; MIDLNTVEDD ETPSSGSSPA SSLSSAISAS NINSNPAYPT SSSSSSSSCS PLCLELWHAC AGPLISLPKR GSLVVYFPQG HLEHVSDFPT SVFDLPSQIF CRVVDVKLHA DASTDDVYAQ VSLVPEREQI EHKLREGDNE IDLDEDEIEP AVKSSTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YNQQRPSQEL VAKDLHGLEW RFRHIYRGQP RRHLLTTGWS AFVNRKKLVS GDAVLFLRAS NGELRLGVRR AIQVKGASAF PSLCIQTLNQ SALMDVPKAV SLGIAFSVYY DPRASSSEFL IPARRFFKSL NQTLAPGMRF KMRFEAEDTA ERRHSGLIAN ISDMDPVRWP NSKWRCLSVR WDDVEPDRGS RICPWEIEPS GSVSSPIGFM MPGSKRTRFG IPSMKPEYPV PNGIGASDFG ESFRFQKVLQ GQENLGFGTP YDGIETQSHR LSEVRRHHPD DSGGSEAAAT RNGITNPSVN ASVTYKGMGF GESFRFREVL QGQETFANPP YTRPWFTSGA QGNGAFGVRD GFQMVPSRNG CSALSQGSDN RFGLPVSSVQ VSSPSSVLMF HQPSRKSSNR SSLCNTLPWD EKLSSPMKVS FGGTSPLGLL NEENRLSFPH SSILLPSEGV VSEDMAPPLK SSCRLFGISL TEGRDVSHKE VSMSSSRLNG EPLFGHIGEN FHPKANVSRV VGSNCTRVLD LPPVSDVLFD VAS // ID A0A059CGC6_EUCGR Unreviewed; 656 AA. AC A0A059CGC6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_D01764 {ECO:0000313|EMBL:KCW77417.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW77417.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198756; KCW77417.1; -; Genomic_DNA. DR RefSeq; XP_010053162.1; XM_010054860.2. DR GeneID; 104441675; -. DR KEGG; egr:104441675; -. DR KO; K14486; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 643 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 656 AA; 73528 MW; B51605AEEB9673FD CRC64; MANRGGGEDD LYTELWKACA GPLVDVPRAG ERVFYFPQGH MEQLEASTNQ ELNERIPLFN LPPKILCRVM YIQLLAEQET DEVYAQITLL PEAPQSEPMS PDPYLPEPPR PRVHSFCKVL TASDTSTHGG FSVLRKHATE CLPPLDMNQS TPTQELAARD LHGYEWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRGESGEL RVGVRRMARQ QSTMPASVIS SQSMHLGVLA TASHAVQTQT LFVVYYKPRT SQFIISLNKY LEAVNNKFSV GMRFKMRFEG EDSPERRFSG TIVGVEDISS QWTDSKWRSL KVQWDEHASV PRPDRVSPWE IESSVPSIPP SMTESAVAKK RPRPPAELPA LDTAGATLHD VGLMQSCDST QPTVFIEGKR SDNHGIWHHK QTSVNTGSNS ISWPQTEGDR QFSPSVCGWP LLSSSTMHSP KPRNEPKVEL AEKPERPTSC RLFGIDLINH SSNSQQVDRL TVQPLDGSAG INETHTPGNA PAADSQQKSV VLKTSKEIIP KQSVVSPKEI RSKQSCSTTA RSRIKVQMQG VAVGRAVDLT MFEEYDQLID ELEEMFEIKG ELRPRNKWEI VFTDDEGDMM LVGDDPWPEF CNMARRIFIW SSQDVKKMSP GSRLPVSSVE EEGSLA // ID A0A059CLZ1_EUCGR Unreviewed; 342 AA. AC A0A059CLZ1; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW78920.1}; GN ORFNames=EUGRSUZ_C00358 {ECO:0000313|EMBL:KCW78920.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW78920.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|EMBL:KCW78920.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Leaf extractions {ECO:0000313|EMBL:KCW78920.1}; RA Schmutz J., Hayes R., Myburg A., Tuskan G., Grattapaglia D., RA Rokhsar D.S.; RT "The genome of Eucalyptus grandis."; RL Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198755; KCW78920.1; -; Genomic_DNA. DR EMBL; KK198755; KCW78921.1; -; Genomic_DNA. DR RefSeq; XP_010047119.1; XM_010048817.2. DR RefSeq; XP_010047121.1; XM_010048819.2. DR GeneID; 104436099; -. DR KEGG; egr:104436099; -. DR KO; K09287; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 104 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 104 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 38643 MW; 77F7C2D5093A0D8A CRC64; MSMEEETLSV ISNSDRNVLA EGSDSNDSAL PSRLTTKRAR QTPNGATSKF KGVVQQQNGH WGAQIYANHQ RIWLGTFKSD EEAAMAYDSA AIKLRSGDPH RNFPWSKLSV EELNFQSCYS TEAVLTMIKD GTYQSKFTDF VRARTNGPHQ EAGLDLVLAH PNGGLMCRQL FQKELTPSDV GKLNRLVIPK KFAIKYLPRI SGGSEAGKDD APLQLRTLGL DDVQLVFYDR SMRSWKFRYC YWSSSHSFVF TRGWNRFVKE KELRANDTVA FYMCEYREPR KEGRTFCMID VQQRDKNGGG LGEKGLGEEA KGSIEIMPVE GEKKDESKTM KKGLKIFGVE IC // ID A0A059CQR1_EUCGR Unreviewed; 1053 AA. AC A0A059CQR1; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_C02178 {ECO:0000313|EMBL:KCW80808.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW80808.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198755; KCW80808.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 941 1025 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1053 AA; 116700 MW; F520BE4140CC83B9 CRC64; MKKDVDAQVP NYPNLPSKLL CLLHSVTLHA DPETDEVFAQ MTLQPVPSFD KEALLRSDLA LKTTKPQPDF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LMARDLHDTM WNFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD DKQQLLLGIR RANRQPTNLS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPSCFALRA SPSEFVIPLA KYYKAVYSNQ ISLGMRFRMM FETEDSGTRR FMGTITGMSD IDPVRWKDSQ WRNLQVGWDE STAGEKRTRV SSWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDLSDLDS LFKRTTMPWL VDDLSMKDPP ALSGLGFMHW MSMQQSPSFA NSIQSNYMPN LSNSVLQNLS GTDPSRQLGF SAPQMAQLNN LQFNTQRPPQ QAQQLDQLTK LPSTLNPLSN IVQPQQQLTD ISQQSRQSLI NHTLPSTQVQ AQVLQSQSLI QSSTLLPQQS LNQNQPFHRS LPQNLHQPQQ QQIMGQNQQQ SALNSQMPDQ SSSQLPMPDN QIQLQMIQKL QQQQQQQQSL LAQQSALQQP THPQQLQEQR QHPDVSQSFS KSMVTSQMLE MPQSTANSFS QPNIIPQQIQ KNNSQLNVRF SNLSQQPKFQ QEQSGLLPEM VGHMGLPQIS TSHASASASM LTGAAAGGPS VTTDDMPCSA SASGQNCANI VQSMMNGRPH RSASISEDMS QSTATFWNPS ALETIGSNGN NMMKDFQPKP DVKPSLDVSK GQNQGFFSAQ TYLNGATTQT DYLDASSSTT SVCLSQSDAH IQQNNSSVSY NQQSMLFRDT SQDREVQADI RSSVPFSSNA DVQAGIPVNS DSMFGKGMVG LGKGFANDVP SAGILADYDN KEPQQLSSSM VSQSFGVSDV AFNLMESALN ESTLVSRGPW GPAAPQFQRM RTFTKVYKRG AVGRSVDITR YSGYDELKQD LARRFGIEGQ LEDGQKVGWK LVYVDHENDV LLVGDDPWED FVNCVRCIKI LSPQEVQQMS LDGDFGNTTL PNQACSSSDG GNV // ID A0A059CR05_EUCGR Unreviewed; 1119 AA. AC A0A059CR05; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_C02178 {ECO:0000313|EMBL:KCW80807.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW80807.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198755; KCW80807.1; -; Genomic_DNA. DR RefSeq; XP_010048533.1; XM_010050231.2. DR GeneID; 104437303; -. DR KEGG; egr:104437303; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1007 1091 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1119 AA; 123242 MW; EEB6D2E53EE7ADA5 CRC64; MKMPASGAGA PSATATASPC EGGGEKKSVI NPELWQACAG PLVNLPPAGT HVVYFPQGHS EQVAASMKKD VDAQVPNYPN LPSKLLCLLH SVTLHADPET DEVFAQMTLQ PVPSFDKEAL LRSDLALKTT KPQPDFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELMAR DLHDTMWNFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDDKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPS CFALRASPSE FVIPLAKYYK AVYSNQISLG MRFRMMFETE DSGTRRFMGT ITGMSDIDPV RWKDSQWRNL QVGWDESTAG EKRTRVSSWE IEPVTAPFFI CPPPFFRSKR PRQPGMPDDD LSDLDSLFKR TTMPWLVDDL SMKDPPALSG LGFMHWMSMQ QSPSFANSIQ SNYMPNLSNS VLQNLSGTDP SRQLGFSAPQ MAQLNNLQFN TQRPPQQAQQ LDQLTKLPST LNPLSNIVQP QQQLTDISQQ SRQSLINHTL PSTQVQAQVL QSQSLIQSST LLPQQSLNQN QPFHRSLPQN LHQPQQQQIM GQNQQQSALN SQMPDQSSSQ LPMPDNQIQL QMIQKLQQQQ QQQQSLLAQQ SALQQPTHPQ QLQEQRQHPD VSQSFSKSMV TSQMLEMPQS TANSFSQPNI IPQQIQKNNS QLNVRFSNLS QQPKFQQEQS GLLPEMVGHM GLPQISTSHA SASASMLTGA AAGGPSVTTD DMPCSASASG QNCANIVQSM MNGRPHRSAS ISEDMSQSTA TFWNPSALET IGSNGNNMMK DFQPKPDVKP SLDVSKGQNQ GFFSAQTYLN GATTQTDYLD ASSSTTSVCL SQSDAHIQQN NSSVSYNQQS MLFRDTSQDR EVQADIRSSV PFSSNADVQA GIPVNSDSMF GKGMVGLGKG FANDVPSAGI LADYDNKEPQ QLSSSMVSQS FGVSDVAFNL MESALNESTL VSRGPWGPAA PQFQRMRTFT KVYKRGAVGR SVDITRYSGY DELKQDLARR FGIEGQLEDG QKVGWKLVYV DHENDVLLVG DDPWEDFVNC VRCIKILSPQ EVQQMSLDGD FGNTTLPNQA CSSSDGGNV // ID A0A059CUQ3_EUCGR Unreviewed; 1119 AA. AC A0A059CUQ3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_C03293 {ECO:0000313|EMBL:KCW81919.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW81919.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198755; KCW81919.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1083 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1119 AA; 124934 MW; 74981B01CF85EB9D CRC64; MKVPSNGFLA GGGEGEKKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TTCVPSYPNL PPKLICMLHN VTLHADLETD EVYAQMTLQP VSKYDQEALL ASDMGLKQSR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFTMQ PPCQELTARD LHDNSWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRW ASPSEFVIPL AKYNKAFYTQ VSLGMRFRMM FETEESGVRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERPSRV SMWEIEPVVT PFYICPPPFF RPKFPRQPDD ESDVENAFKR AMPWLGDEFG IKDTPSSIFP GLSLMQWMSM QQSNPLQATQ SGLLPPMLSS TGLHNNLGID DPSKLLSFQA PTQGLQFNKT NPQNQVSQLL QPSMAWSQQH QLQQLLQNPL GHQQQQQQQQ LQRQQQQQLQ SSQQQTPQQL PQSQPPQQQP LQPQQFQQQS PHQPSQQTSQ QQQVVQTPLG NGGVVTSNQF PSQMVQQSAL YSQLQQQQQQ QQQQLLTTQN APSQPSILGI NKVPVHPTSV SQDSKFQSQM EQQQPSLLQR HQQQPMQMQP SSLLQQSWTQ RAQPQLQPQL PQVLQQNLSE QQIQLQLQKL QQQQQHQQQL PNPAGPLLQP QLQQQQQQQQ QHQQQVVPQN QMPLSQQQLV CNSLPTPALL PPQPSNPNHL YGQQKALTAV RALSGLTDGD GPSCSTSPST NNCHIPSSNF LCKNQVAQPV LVGDSSLIEP MNHLIQEHQM KPDARIKHEL PSSKGHDQLK YKASVTDPLE VSSSATSYCL DATAAQQNFS LPTFCLDSDV QSQPRNTSPF AANIDNLAAD TLLSRGFDSQ KDLQNLLSTY GGGTPRDIET ELSTAAISSQ SFGVPSMPFK AGCSNDVAIN DTGVLNGGIW SSQTQRMRTY TKVQKRGSVG RSIDITRYRG YDELRRDLAR MFGIEGQLED PHRTDWKLVY MDHENDILLV GDDPWEEFVT CVQSVKILSS TEVQQMSLDG DLGLVPIPNQ ASSGTDSGNA WRGDILISR // ID A0A059CVH0_EUCGR Unreviewed; 1118 AA. AC A0A059CVH0; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_C03293 {ECO:0000313|EMBL:KCW81920.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW81920.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198755; KCW81920.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 997 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1118 AA; 124748 MW; E95A4FAB0D98297F CRC64; MKVPSNGFLA GGGEGEKKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TTCVPSYPNL PPKLICMLHN VTLHADLETD EVYAQMTLQP VSKYDQEALL ASDMGLKQSR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFTMQ PPCQELTARD LHDNSWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAFYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DSVRWKNSQW RNLQVGWDES TAGERPSRVS MWEIEPVVTP FYICPPPFFR PKFPRQPDDE SDVENAFKRA MPWLGDEFGI KDTPSSIFPG LSLMQWMSMQ QSNPLQATQS GLLPPMLSST GLHNNLGIDD PSKLLSFQAP TQGLQFNKTN PQNQVSQLLQ PSMAWSQQHQ LQQLLQNPLG HQQQQQQQQL QRQQQQQLQS SQQQTPQQLP QSQPPQQQPL QPQQFQQQSP HQPSQQTSQQ QQVVQTPLGN GGVVTSNQFP SQMVQQSALY SQLQQQQQQQ QQQLLTTQNA PSQPSILGIN KVPVHPTSVS QDSKFQSQME QQQPSLLQRH QQQPMQMQPS SLLQQSWTQR AQPQLQPQLP QVLQQNLSEQ QIQLQLQKLQ QQQQHQQQLP NPAGPLLQPQ LQQQQQQQQQ HQQQVVPQNQ MPLSQQQLVC NSLPTPALLP PQPSNPNHLY GQQKALTAVR ALSGLTDGDG PSCSTSPSTN NCHIPSSNFL CKNQVAQPVL VGDSSLIEPM NHLIQEHQMK PDARIKHELP SSKGHDQLKY KASVTDPLEV SSSATSYCLD ATAAQQNFSL PTFCLDSDVQ SQPRNTSPFA ANIDNLAADT LLSRGFDSQK DLQNLLSTYG GGTPRDIETE LSTAAISSQS FGVPSMPFKA GCSNDVAIND TGVLNGGIWS SQTQRMRTYT KVQKRGSVGR SIDITRYRGY DELRRDLARM FGIEGQLEDP HRTDWKLVYM DHENDILLVG DDPWEEFVTC VQSVKILSST EVQQMSLDGD LGLVPIPNQA SSGTDSGNAW RGDILISR // ID A0A059D4N5_EUCGR Unreviewed; 742 AA. AC A0A059D4N5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_B02480 {ECO:0000313|EMBL:KCW85713.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW85713.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW85713.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 169 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 669 742 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 169 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 742 AA; 82703 MW; E30E1263848EB5EA CRC64; MEIDLNHAVS DVENASNACC DGHCEKGNGC LHCLSSTSSN SSSSSSSSAV PCSIYSELWH ACAGRLTSLP KKGNVVLYFP QGHLEQVASA SPYSPMEMPT FDLQPQIFCR VVNVQLLANK DNDEVYTKVT LLPQLELVGL DSEGRALEEL GVDENDIGGS PPRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSV FVSQKNLVSG DAVLFLRGED GELRLGIRRA HRPRNVLPGS TVGEQNMCPA VLSAVASAVS TKSVFHVFYS PRASHAEFVV PYQKYLKSIN NVICIGTRFK MRVDVDDAPE KRCTGVVTRI GDLDPYRWPN SKWRCLMVQW DDDITNGHQD RVSPWEIDPS VSHSPLSIQS SPRLKRPRTS LPTMPPVPGG GVRLLDFEES LRSSKVLQGQ EKLHLVSPVY GRDTLNCQVD FEQSPAHQGL ASVVVEKANN INEYMRANAP SYAGFVESDR FPRVLQGQEI CTLKSLTTKP EYNLGTWGKS SLSCSSFGVH QAPKYHFDQV KSSESLQKVY FPYNDILKSS QDRTRCSDST NFLREVASVR SLRVQNEAIE RTKVDVRNLE SICTSPNFGD SQRAQANGSI DSLLSGCKLF GYPLTAEAPT STLQNSGKRS CTKVHKQGNL VGRAIDLSRL NSYQDLLNDL ERLFSMEGLL RDHDKGWRIL YTDSENDVMV LGDIPWQKKW KR // ID A0A059D541_EUCGR Unreviewed; 797 AA. AC A0A059D541; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_B02480 {ECO:0000313|EMBL:KCW85712.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW85712.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW85712.1; -; Genomic_DNA. DR RefSeq; XP_010043718.1; XM_010045416.2. DR GeneID; 104432854; -. DR KEGG; egr:104432854; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 169 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 669 751 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 169 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 797 AA; 88533 MW; 9F5D67F948D0FDE7 CRC64; MEIDLNHAVS DVENASNACC DGHCEKGNGC LHCLSSTSSN SSSSSSSSAV PCSIYSELWH ACAGRLTSLP KKGNVVLYFP QGHLEQVASA SPYSPMEMPT FDLQPQIFCR VVNVQLLANK DNDEVYTKVT LLPQLELVGL DSEGRALEEL GVDENDIGGS PPRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSV FVSQKNLVSG DAVLFLRGED GELRLGIRRA HRPRNVLPGS TVGEQNMCPA VLSAVASAVS TKSVFHVFYS PRASHAEFVV PYQKYLKSIN NVICIGTRFK MRVDVDDAPE KRCTGVVTRI GDLDPYRWPN SKWRCLMVQW DDDITNGHQD RVSPWEIDPS VSHSPLSIQS SPRLKRPRTS LPTMPPVPGG GVRLLDFEES LRSSKVLQGQ EKLHLVSPVY GRDTLNCQVD FEQSPAHQGL ASVVVEKANN INEYMRANAP SYAGFVESDR FPRVLQGQEI CTLKSLTTKP EYNLGTWGKS SLSCSSFGVH QAPKYHFDQV KSSESLQKVY FPYNDILKSS QDRTRCSDST NFLREVASVR SLRVQNEAIE RTKVDVRNLE SICTSPNFGD SQRAQANGSI DSLLSGCKLF GYPLTAEAPT STLQNSGKRS CTKVHKQGNL VGRAIDLSRL NSYQDLLNDL ERLFSMEGLL RDHDKGWRIL YTDSENDVMV LGDIPWHEFC DVVTKIHIYT QEEVEKMTTG MISDDTQSCL DQAPLMMEAS KSSSVGQPDG SPTVVRL // ID A0A059D5E0_EUCGR Unreviewed; 678 AA. AC A0A059D5E0; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_B02480 {ECO:0000313|EMBL:KCW85714.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW85714.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW85714.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 169 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 169 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 74977 MW; 3BA6DDB1DF505AB7 CRC64; MEIDLNHAVS DVENASNACC DGHCEKGNGC LHCLSSTSSN SSSSSSSSAV PCSIYSELWH ACAGRLTSLP KKGNVVLYFP QGHLEQVASA SPYSPMEMPT FDLQPQIFCR VVNVQLLANK DNDEVYTKVT LLPQLELVGL DSEGRALEEL GVDENDIGGS PPRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSV FVSQKNLVSG DAVLFLRGED GELRLGIRRA HRPRNVLPGS TVGEQNMCPA VLSAVASAVS TKSVFHVFYS PRASHAEFVV PYQKYLKSIN NVICIGTRFK MRVDVDDAPE KRCTGVVTRI GDLDPYRWPN SKWRCLMVQW DDDITNGHQD RVSPWEIDPS VSHSPLSIQS SPRLKRPRTS LPTMPPVPGG GVRLLDFEES LRSSKVLQGQ EKLHLVSPVY GRDTLNCQVD FEQSPAHQGL ASVVVEKANN INEYMRANAP SYAGFVESDR FPRVLQGQEI CTLKSLTTKP EYNLGTWGKS SLSCSSFGVH QAPKYHFDQV KSSESLQKVY FPYNDILKSS QDRTRCSDST NFLREVASVR SLRVQNEAIE RTKVDVRNLE SICTSPNFGD SQRAQANGSI DSLLSGCKLF GYPLTAEAPT STLQNSGSQA RKFGGTSH // ID A0A059D6R9_EUCGR Unreviewed; 237 AA. AC A0A059D6R9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW86111.1}; GN ORFNames=EUGRSUZ_B02809 {ECO:0000313|EMBL:KCW86111.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW86111.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW86111.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 184 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 184 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 27209 MW; A0C4B3FAD3AC7FDA CRC64; MTSCRRRGDE ENRQSFALET PHFFKIVLSQ TLQIGRLSIP KRFVRKYGKN LPKTLRERIP PALPMGGCEG HLLVFKYVEN SDFHVLIFDK SASEIDYPLM NTDSKKSNLD FVKAVPPIMG DTDDHYNISI ELERLNGFSL KRKEKDKLHL IPFHHKPSKT VPGRVLKGCI DGRTQTATLK YLERSWTVKL LYYRQHGLGK LSAGWSAFQR GTSLKEGDVC VFEPVRIDII ELEVSTF // ID A0A059D7A5_EUCGR Unreviewed; 364 AA. AC A0A059D7A5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW86364.1}; GN ORFNames=EUGRSUZ_B03048 {ECO:0000313|EMBL:KCW86364.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW86364.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW86364.1; -; Genomic_DNA. DR RefSeq; XP_010044293.1; XM_010045991.2. DR GeneID; 104433302; -. DR KEGG; egr:104433302; -. DR KO; K09287; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 197 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 197 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 364 AA; 39809 MW; 277FEEE6BB63C7F6 CRC64; MDGNSSCIDE LSSTSDSVCV PPPSKSSPPP LPPPPQSLCR HGSGTSVIVD SEGCVEAESR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA AMAYDVAAQR FRGGDAVTNF KRKSEAEDYD LEAAFLSAHS KPEIVDMLRK HTYRDELEQS KRKCLNSNGG GKRASMTEVL GDLSSPGGIA MVRQLLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLRNGTS SATSKGVLLN FEDSGGKVWR FRYSYWNSSQ SYVLTRGWSR FVKEKGLTAG DIVSFHQSAG PEKQLHIGYR RRSSLGGSGP VLPVQMVRLF GVNIFKVSAA GGGDDTGDWS GKRMREVELL SLGCNKKQMV IGAL // ID A0A059D7B1_EUCGR Unreviewed; 130 AA. AC A0A059D7B1; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW86110.1}; GN ORFNames=EUGRSUZ_B02808 {ECO:0000313|EMBL:KCW86110.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW86110.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW86110.1; -; Genomic_DNA. DR RefSeq; XP_018724504.1; XM_018868959.1. DR GeneID; 108957753; -. DR KEGG; egr:108957753; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 130 AA; 14576 MW; 1CC16CC6BCA330C4 CRC64; MLASRSSTSK RSKKVTTALK GANEDELQCP SFTVVIRSHN LLKQNVTVPG GILREHINGS MQTATLKYRD GSWPVKLLYY PQHGSGKLLA GWASFHRGTY LKEGDVCLFE LVRIDNVELK VSNFRRNAKI // ID A0A059D825_EUCGR Unreviewed; 163 AA. AC A0A059D825; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW86365.1}; GN ORFNames=EUGRSUZ_B03050 {ECO:0000313|EMBL:KCW86365.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW86365.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW86365.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 163 AA; 18280 MW; 04B010F8E05DCCF6 CRC64; MEAIRDPSGP DRAAMACHLL FQKEVTQSDV GKLNRFVIPK QHAEKHFPLR NRTSPTTSKG VLLNFIDSGG KVWRFRYSYW NSSRSYVLTR GWTRFVKEKS LRTGDIVSFH RSAGPEKQLH IKCMRRSGLS QAGPIHPVQM VRLFGVDIFE VSAEDGGGYG GGG // ID A0A059D8V3_EUCGR Unreviewed; 787 AA. AC A0A059D8V3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUGRSUZ_B03551 {ECO:0000313|EMBL:KCW86992.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW86992.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW86992.1; -; Genomic_DNA. DR RefSeq; XP_010044876.1; XM_010046574.2. DR GeneID; 104433724; -. DR KEGG; egr:104433724; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 674 767 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 787 AA; 88091 MW; B75EF8019CF2EF15 CRC64; MASHEVSVVG SDRRERERTG CEDALYKELW HACAGPLVTV PREGELVYYF PQGHIEQIEA SMNQVADRQI PFYNLPSKIL CRVINVQLRA EPETDELFAQ VTLLPVPNQD ETAVEKETGH PLPPRPRVHS FCKTLTASDT STHGGFSVLR RHADECLPQL DMTKQPPTQE LVAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SLFVSSKKLV AGDAFIFLRG ENGELRVGVR RAMRQLNNVP SSIMPSHSMH IGVLATAWHA ISTGTMFTVY YKPRTSPAEF IIPFDKYIES AKFDYSIGMR FRMTFEGEEA PEQRFSGTVI GSEDVDPPRW PGSKWRCLKV RWDEITSIHR PDRVSPWNIE PAVTAPDNLP ASRPKRPRAS MSSSTDSSVR MREGPLGNGT DPPADIGFSK ALQGQEFSTL KGSLTLNNDM ENAEMPDAWY EFPGDNRKSM HFGQRKCRPN TWVPQLVQEA TLINLVPDSG TFHHRHGIFS SFLRRDSEIT KRAKKQNSAE ETKTDLIPSP GSVRQGPSLN MLGSGIVASL ENESRQQQSL GNVKGDTKRE MNSGNCFLPM HSPSLAQQEL IKANGNGSCK LFGISLMSGT VATESDNGHV HGSQKPVLQS NLVDYSEPNV LGSPIKCLKI APSPIAYGEQ GRAFPSSEQP VRDVEGKHQA VSTRSCIKVH KQDIPVGRSV DLSRFHGYSE LITELDEIFD FNGDLVAPSK EWLVVFTDDE GDMMLVGDDP WEEFCGMVHK IFIYSREEVK RMAPRPLVPK SEEISPKTSH KRYSGGI // ID A0A059DB03_EUCGR Unreviewed; 824 AA. AC A0A059DB03; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW87581.1}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_B040272 {ECO:0000313|EMBL:KCW87581.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW87581.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198754; KCW87581.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 258 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 523 573 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 258 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KCW87581.1}. SQ SEQUENCE 824 AA; 91480 MW; 3EDB24DF217ACF2C CRC64; SAYEKSSYCD CFHQEESGWR DCRFCGKRLH CGCIASRSLV EFVDCGGVMC ISCSKNRTHP STSTEDRGRE EEKLMQLFMS NEPKILPQAP RDDIRASYGE VQQETRHFSG EAAIGFSHGM TDPTVGSRKL TKLEDSRFLL KLKDTHRSLP HPSLNISLGS PGVSSHIAPP FSGRVGEGSQ TVGPPSLLQG RSRPILPKLP KSAIAGPETI KIPHVRVARP PAEGRGKNQL LPRYWPKITD QELQQLSGDL NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPAIAQS EGIPVPIRDV KGNEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMQLRAGDTV IFSKIDPGGK LIMGFRKASN SNDPQDNQVP IVPNGDLSRE GSFQPFMGTL PIVEDYTNLF RTASGIKDPR SNPSSELLSN NDGDTRCNKM EDDVGRTCED PAQQASPIPE KKRTRNIGSK SRRMLIHNED VLELRLTWEE AQDLLRPPPC VKPSIVTVEG HIFEEYDEPP VFGKRTIFVS QLSGGTEQWA QCDDCSKWRK LPMDAHLPPG WICSDNIWDS ERRNCSAPDE LSPEELESLL RVNKDVKRQR VDEDHRNETD GETSGLDALA SAAVLGESMD DPGEPSSGVT TKHPRHRPGC TCIVCIQPPS GKGKHKPTCT CNVCMMVKRR FKTLMSRKKK RQSDQDSETI QKDLIHYGHE LGTDGTLVNA SSEINHEENV ISQNKKTEVA DNSNGHIDLN CHPDHEHVQL EGETRSIMGF TQETKNLSGN DSTHDVISTL QCERLASTSS GLFGQTVEEK GKRLSNGECL QSILHETMMQ AKKG // ID A0A059DGD2_EUCGR Unreviewed; 313 AA. AC A0A059DGD2; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_A020651 {ECO:0000313|EMBL:KCW89823.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW89823.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198753; KCW89823.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 313 313 {ECO:0000313|EMBL:KCW89823.1}. SQ SEQUENCE 313 AA; 34881 MW; 9EBC4F3FE036F30C CRC64; MRLSSSGFNH QSPEASNAGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS TNKEVDAHIP NYPNLSPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDLYLLPAE LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPSPSEFV IPLAKYVKAV YHTRVSVGMR FRMLFETEES SVR // ID A0A059DGI9_EUCGR Unreviewed; 194 AA. AC A0A059DGI9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW89692.1}; GN ORFNames=EUGRSUZ_A01956 {ECO:0000313|EMBL:KCW89692.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW89692.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198753; KCW89692.1; -; Genomic_DNA. DR RefSeq; XP_018724383.1; XM_018868838.1. DR GeneID; 108957707; -. DR KEGG; egr:108957707; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 22500 MW; E7073BA06786D4FC CRC64; MVFSYQSPGV FRIVLYGHSA CEKKRVRPPW EVGEGSEVQE YHSDDDDDED YNEEEEEEED EGRSKRSKKE GNVEERKAAN EDPIDVKRYI DLKNPYFVTV IQALRSSYLY VPRSVLINYE LKLPQAILFH DPTGRTWRGT VKVWTDSRTW ITGWEALCRH TNLKKNDWCI CELLEENGVA GCIIKVHIIG GNST // ID A0A059DH82_EUCGR Unreviewed; 315 AA. AC A0A059DH82; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_A020651 {ECO:0000313|EMBL:KCW89824.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW89824.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198753; KCW89824.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 315 315 {ECO:0000313|EMBL:KCW89824.1}. SQ SEQUENCE 315 AA; 35108 MW; 2136BDB02DF59723 CRC64; MRLSSSGFNH QSPEASNAGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS TNKEVDAHIP NYPNLSPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDLYLLPAE LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVR // ID A0A059DHV5_EUCGR Unreviewed; 310 AA. AC A0A059DHV5; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=EUGRSUZ_A020651 {ECO:0000313|EMBL:KCW89825.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW89825.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198753; KCW89825.1; -; Genomic_DNA. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 310 310 {ECO:0000313|EMBL:KCW89825.1}. SQ SEQUENCE 310 AA; 34557 MW; A0F054433CC5FBBF CRC64; MSSEFCPLLA SNAGEKKCLN SELWHACAGP LVSLPPVGSR VVYFPQGHSE QVAASTNKEV DAHIPNYPNL SPQLICQLHN VTMHADVETD EVYAQMTLQP LSPQEQKDLY LLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR // ID A0A059DJE9_EUCGR Unreviewed; 278 AA. AC A0A059DJE9; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KCW90506.1}; GN ORFNames=EUGRSUZ_A02625 {ECO:0000313|EMBL:KCW90506.1}; OS Eucalyptus grandis (Flooded gum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; OC Eucalypteae; Eucalyptus. OX NCBI_TaxID=71139 {ECO:0000313|EMBL:KCW90506.1, ECO:0000313|Proteomes:UP000030711}; RN [1] {ECO:0000313|Proteomes:UP000030711} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24919147; DOI=10.1038/nature13308; RA Myburg A.A., Grattapaglia D., Tuskan G.A., Hellsten U., Hayes R.D., RA Grimwood J., Jenkins J., Lindquist E., Tice H., Bauer D., RA Goodstein D.M., Dubchak I., Poliakov A., Mizrachi E., Kullan A.R., RA Hussey S.G., Pinard D., van der Merwe K., Singh P., van Jaarsveld I., RA Silva-Junior O.B., Togawa R.C., Pappas M.R., Faria D.A., RA Sansaloni C.P., Petroli C.D., Yang X., Ranjan P., Tschaplinski T.J., RA Ye C.Y., Li T., Sterck L., Vanneste K., Murat F., Soler M., RA Clemente H.S., Saidi N., Cassan-Wang H., Dunand C., Hefer C.A., RA Bornberg-Bauer E., Kersting A.R., Vining K., Amarasinghe V., Ranik M., RA Naithani S., Elser J., Boyd A.E., Liston A., Spatafora J.W., RA Dharmwardhana P., Raja R., Sullivan C., Romanel E., Alves-Ferreira M., RA Kulheim C., Foley W., Carocha V., Paiva J., Kudrna D., RA Brommonschenkel S.H., Pasquali G., Byrne M., Rigault P., Tibbits J., RA Spokevicius A., Jones R.C., Steane D.A., Vaillancourt R.E., RA Potts B.M., Joubert F., Barry K., Pappas G.J., Strauss S.H., RA Jaiswal P., Grima-Pettenati J., Salse J., Van de Peer Y., RA Rokhsar D.S., Schmutz J.; RT "The genome of Eucalyptus grandis."; RL Nature 509:356-362(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK198753; KCW90506.1; -; Genomic_DNA. DR RefSeq; XP_010059417.1; XM_010061115.2. DR GeneID; 104447367; -. DR KEGG; egr:104447367; -. DR Proteomes; UP000030711; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030711}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030711}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 30481 MW; 619A694B7AE3ABCC CRC64; MSLNHPLSTS DGTPNTLWWT THPTMFRQHN LLLNFNPTDD DPQDEGSPPP PYVLRGAPPP AEPSPAEKEP MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL VGEATQQLSF EDESGKWWRF RYSYWSSSQS YVLTKGWSRF VKDKRLDAGD VVLFHRDRAD AERLFIGWRR RGESSPGASA VAAETRVGGG GGGFYAGRPY PGHNDGPSQP GSYTHGQAGG APAAGNNPRR VRLFGVNLEC QLDGDEESEL PGSSHSPTGH GLSSNSSNYT PSHGLHFI // ID A0A059LG40_9CHLO Unreviewed; 118 AA. AC A0A059LG40; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 30-NOV-2016, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDD73307.1}; DE Flags: Fragment; GN ORFNames=H632_c2318p0 {ECO:0000313|EMBL:KDD73307.1}; OS Helicosporidium sp. ATCC 50920. OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Helicosporidium. OX NCBI_TaxID=1291522 {ECO:0000313|EMBL:KDD73307.1, ECO:0000313|Proteomes:UP000026042}; RN [1] {ECO:0000313|EMBL:KDD73307.1, ECO:0000313|Proteomes:UP000026042} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 50920 {ECO:0000313|EMBL:KDD73307.1, RC ECO:0000313|Proteomes:UP000026042}; RX PubMed=24809511; RA Pombert J.F., Blouin N.A., Lane C., Boucias D., Keeling P.J.; RT "A lack of parasitic reduction in the obligate parasitic green alga RT helicosporidium."; RL PLoS Genet. 10:E1004355-E1004355(2014). CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KDD73307.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AYPS01002318; KDD73307.1; -; Genomic_DNA. DR Proteomes; UP000026042; Unassembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026042}; KW Reference proteome {ECO:0000313|Proteomes:UP000026042}. FT DOMAIN 7 109 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT NON_TER 118 118 {ECO:0000313|EMBL:KDD73307.1}. SQ SEQUENCE 118 AA; 13242 MW; 8440DE219859FDC2 CRC64; MGARVLFEKT LTSSDANGAG RIVIPKGHAE SHFPTLPGDD QKGIVLPMFD TFGKRHNFRF RYWINNASRM YLLEDAQAVV DKYSMGHGDV LIFGRLQDGM YAVTGRRGSK ADLNRHVE // ID A0A059LGZ1_9CHLO Unreviewed; 121 AA. AC A0A059LGZ1; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDD73390.1}; GN ORFNames=H632_c2229p1 {ECO:0000313|EMBL:KDD73390.1}; OS Helicosporidium sp. ATCC 50920. OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Helicosporidium. OX NCBI_TaxID=1291522 {ECO:0000313|EMBL:KDD73390.1, ECO:0000313|Proteomes:UP000026042}; RN [1] {ECO:0000313|EMBL:KDD73390.1, ECO:0000313|Proteomes:UP000026042} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 50920 {ECO:0000313|EMBL:KDD73390.1, RC ECO:0000313|Proteomes:UP000026042}; RX PubMed=24809511; RA Pombert J.F., Blouin N.A., Lane C., Boucias D., Keeling P.J.; RT "A lack of parasitic reduction in the obligate parasitic green alga RT helicosporidium."; RL PLoS Genet. 10:E1004355-E1004355(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KDD73390.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AYPS01002229; KDD73390.1; -; Genomic_DNA. DR Proteomes; UP000026042; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026042}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000026042}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 121 AA; 13895 MW; CC4483391CB4B306 CRC64; MAQLLFPQAD EQARRDDPAG MNFNSLFKHR LTVVDEADKA WPVQYEGFMS SGQRHYRLTS GWSTLMRTQR VGIGDTLVLE RWTRDRFVIH LRIVARPRPQ PLPPPSRASS GRLEASRGEG Y // ID A0A059LHM6_9CHLO Unreviewed; 163 AA. AC A0A059LHM6; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDD73524.1}; DE Flags: Fragment; GN ORFNames=H632_c2090p0 {ECO:0000313|EMBL:KDD73524.1}; OS Helicosporidium sp. ATCC 50920. OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Helicosporidium. OX NCBI_TaxID=1291522 {ECO:0000313|EMBL:KDD73524.1, ECO:0000313|Proteomes:UP000026042}; RN [1] {ECO:0000313|EMBL:KDD73524.1, ECO:0000313|Proteomes:UP000026042} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 50920 {ECO:0000313|EMBL:KDD73524.1, RC ECO:0000313|Proteomes:UP000026042}; RX PubMed=24809511; RA Pombert J.F., Blouin N.A., Lane C., Boucias D., Keeling P.J.; RT "A lack of parasitic reduction in the obligate parasitic green alga RT helicosporidium."; RL PLoS Genet. 10:E1004355-E1004355(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KDD73524.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AYPS01002090; KDD73524.1; -; Genomic_DNA. DR Proteomes; UP000026042; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026042}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000026042}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 163 163 {ECO:0000313|EMBL:KDD73524.1}. SQ SEQUENCE 163 AA; 17898 MW; F77B2F06CE9A27D5 CRC64; MCLIAPKFKF VVPNEFVSKF MQHLVEQPFK MVDGQGGSWD MTLIQRRNKE KYEYMLQGWR RFGEEMGVQE GDTVVFEMVN SQNMLLNIVQ RSTGGKGGKL LRGKHPMGLL MSEHGHPPPM GLNPDLVALM HQHQQGLGPG SYGVRSAGGG GVPPHPSGGL AGQ // ID A0A060CVL7_MAIZE Unreviewed; 273 AA. AC A0A060CVL7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB04496.1}; DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:ONL99528.1}; DE Flags: Fragment; GN Name=ABI34 {ECO:0000313|EMBL:AIB04496.1}; GN Synonyms=103637592 {ECO:0000313|EnsemblPlants:Zm00001d029749_P001}; GN ORFNames=ZEAMMB73_Zm00001d029749 {ECO:0000313|EMBL:ONL99528.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB04496.1}; RN [1] {ECO:0000313|EMBL:AIB04496.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ONL99528.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONL99528.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d029749_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d029749_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727005; AIB04496.1; -; Genomic_DNA. DR EMBL; CM007647; ONL99528.1; -; Genomic_DNA. DR RefSeq; XP_008657973.1; XM_008659751.1. DR STRING; 4577.GRMZM2G125095_P01; -. DR EnsemblPlants; Zm00001d029749_T001; Zm00001d029749_P001; Zm00001d029749. DR GeneID; 103637592; -. DR Gramene; Zm00001d029749_T001; Zm00001d029749_P001; Zm00001d029749. DR KEGG; zma:103637592; -. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR OMA; FEDSERP; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000007305; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 273 273 {ECO:0000313|EMBL:AIB04496.1}. SQ SEQUENCE 273 AA; 29648 MW; C5AA82BA998F82B2 CRC64; MEFRPAHARV FEDSERPRGG VAWLEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD ASAAAASASA SAGGGKAGLV LSFEDRAGKA WRFRYSYWNS SQSYVMTKGW SRFVKEKRLG AGDTVLFARG AGATRGRFFI DFRRRRHELA FLQPPLASAQ RLLPLPSVPI CPWQGYGASA PAPSRHVLFL RPQVPAAVVL TSVPVRVAAS AVEEATRSKR VRLFGVNLDC PPDAEDGATA TRTPSTLLQL PSPSSSTSSS TGGKDVRSLD LGL // ID A0A060CYB4_MAIZE Unreviewed; 750 AA. AC A0A060CYB4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=ARF8 {ECO:0000313|EMBL:AIB05511.1}; GN Synonyms=100273544 {ECO:0000313|EnsemblPlants:Zm00001d041056_P006}; GN ORFNames=ZEAMMB73_Zm00001d041056 {ECO:0000313|EMBL:ONM32314.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB05511.1}; RN [1] {ECO:0000313|EMBL:AIB05511.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ONM32314.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM32314.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d041056_P006} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d041056_P006}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ728020; AIB05511.1; -; mRNA. DR EMBL; CM007649; ONM32314.1; -; Genomic_DNA. DR EMBL; CM007649; ONM32323.1; -; Genomic_DNA. DR EnsemblPlants; Zm00001d041056_T006; Zm00001d041056_P006; Zm00001d041056. DR EnsemblPlants; Zm00001d041056_T009; Zm00001d041056_P009; Zm00001d041056. DR Gramene; Zm00001d041056_T006; Zm00001d041056_P006; Zm00001d041056. DR Gramene; Zm00001d041056_T009; Zm00001d041056_P009; Zm00001d041056. DR Proteomes; UP000007305; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 622 706 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 57 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 750 750 {ECO:0000313|EMBL:AIB05511.1}. SQ SEQUENCE 750 AA; 83277 MW; BB7DDD4C3BF0A66D CRC64; MNIELKVEPD TDEVYAQLTL LPDKKQDENT STTVEEEEVV VPPALPATNE GPHIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK DLHGAEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRALR HQTTIPSSVI SSHNMHLGVL ATAWHAVNTD SMFTVYYKPR TSPAEFVVSR DRYYESLKRN YSIGMRFKMR FEGEEAAEQR FTGTIVGIGA SDPSGWADSK WRSLKVRWDE PSSISRPERV SPWQIEPSVS PCHVNPLPVR FKRSRSSVNA LPSDVSTVTR EVTSKVMADS QQNSLTRALH NQGRTQLTVR YHDNSDVKTT QDLTVWSSGT EQQRNNIAAQ TKLCLEGWTP TRSPEGYNQI FSAFKPLKDI HNPLGPFPSQ ISGTHSNSWD TADARYPVQQ ANYSMLPGTW SLRPHNSGFR MNQQNYLVMP EGANFTGKSA FTSLQDHGTD KCSTGCFGHI ESSSHTDHAS SSLIRPQPLV LGNGVQKSKG TSFKLFGIPL GSPEKSEPLV SPPSVAYDGK LQTSPSEKGN QLDVVEVDNC SHPSKTVKPL DGPQSDSITE NNQPSPEATL NIQNKVQSSS TRSCKKVHKQ GSALGRSIDL TKFACYDELI AELDQMFDFD GELKSPCKSW LVVYTDNEGD IMLVGDDPWN EFCDMVHKIF IYTREEVERM NPGALNSRSE DSLSDSLGRG VASRDPRGGG STSALDSENC // ID A0A060CYJ7_MAIZE Unreviewed; 739 AA. AC A0A060CYJ7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=ARF18 {ECO:0000313|EMBL:AIB04307.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB04307.1}; RN [1] {ECO:0000313|EMBL:AIB04307.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ726816; AIB04307.1; -; mRNA. DR STRING; 4577.GRMZM2G035405_P02; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 606 690 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 739 739 {ECO:0000313|EMBL:AIB04307.1}. SQ SEQUENCE 739 AA; 81995 MW; F490470ACD815104 CRC64; MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND NNQLLLGIRR ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLVKYVKAV YHTRISVGMR FRMLFETEES SVRRYMGTIT GICDLDSVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW PTGLPSLHGG KDDDLANSLM WLRDTANPGF QSLNFGGLGM SPWMQPRLDA TLLGLQPDMY QAMATAAFQD ATKQASPTML QFQQPQNIAG RASPLLSSQI LQQAHHQFQQ QPYLQNISES TIQAQGQSEF LKQQIQRSQS FNEQKPQMQH QQESQQQQQP QCLPVPQHQQ MQQQNMTNYQ SISNALSPFS QLSPVSQSSP MALQTILPFS QAQSFTDTNV GSLSPSNGNT MQNTLRPFSS EAVSHLSMPR PTAIPVADPW SSKRVAVESL LPSRPQVSSQ MEQLDPAPAS IPHSSALAPL PGRGCLVDQD VNSDPQNHLL FGVSIDSQSL LMQGGIPGLQ NGNDSAAIPY STSNFLSPSQ NDFPLDHTLN SSGCLDDSGY VPPCSDNSDK VNRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLEDPL RSGWQLVFVD REEDVLLVGD DPWQEFVSTV SCIKILSPQE VQQMGKQGLE LLSSAPARRL GSSCDDYVSR QESRSLSTGI ASVGSVELG // ID A0A060CZ68_MAIZE Unreviewed; 327 AA. AC A0A060CZ68; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB04492.1}; DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:ONL93067.1}; DE Flags: Fragment; GN Name=ABI8 {ECO:0000313|EMBL:AIB04492.1}; GN Synonyms=103631056 {ECO:0000313|EnsemblPlants:Zm00001d027409_P001}; GN ORFNames=ZEAMMB73_Zm00001d027409 {ECO:0000313|EMBL:ONL93067.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB04492.1}; RN [1] {ECO:0000313|EMBL:AIB04492.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ONL93067.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONL93067.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d027409_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d027409_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727001; AIB04492.1; -; Genomic_DNA. DR EMBL; CM007647; ONL93067.1; -; Genomic_DNA. DR RefSeq; XP_008650288.1; XM_008652066.1. DR STRING; 4577.GRMZM2G082227_P01; -. DR EnsemblPlants; Zm00001d027409_T001; Zm00001d027409_P001; Zm00001d027409. DR GeneID; 103631056; -. DR Gramene; Zm00001d027409_T001; Zm00001d027409_P001; Zm00001d027409. DR KEGG; zma:103631056; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007305; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 327 327 {ECO:0000313|EMBL:AIB04492.1}. SQ SEQUENCE 327 AA; 36033 MW; 257C192DFEC4A69E CRC64; MEFTAPPPAT RSGGGEERAA AEHHQQQQQA TVEKEHMFDK VVTPSDVGKL NRLVIPKQHA ERYFPLDAAA NDKGLLLSFE DRAGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT VSFGRGVGEA ARGRLFIDWR RRPDPPVVHH QYHHHRLPLP SAVVPYAPWA AAAHAHHHHY PAAGVGAART TTTTTTTVLH HLPPSPSPLY LDTRRRHVGY DAYGAGTRQL LFYRPHQQPS TTVMLDSVPV RLPPTPGQHA EPPPPAVASS ASKRVRLFGV NLDCAAAAGS EEENVGGWRT SAPPTQQASS SSSYSSGKAR CSLNLDL // ID A0A060D1G2_MAIZE Unreviewed; 552 AA. AC A0A060D1G2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB05337.1}; DE Flags: Fragment; GN Name=ABI28 {ECO:0000313|EMBL:AIB05337.1}; GN Synonyms=103646788 {ECO:0000313|EnsemblPlants:Zm00001d004358_P003}; GN ORFNames=ZEAMMB73_Zm00001d004358 {ECO:0000313|EMBL:ONM18774.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB05337.1}; RN [1] {ECO:0000313|EMBL:AIB05337.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ONM18774.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM18774.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d004358_P003} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d004358_P003}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727846; AIB05337.1; -; mRNA. DR EMBL; CM007648; ONM18774.1; -; Genomic_DNA. DR RefSeq; XP_008669670.1; XM_008671448.1. DR EnsemblPlants; Zm00001d004358_T003; Zm00001d004358_P003; Zm00001d004358. DR GeneID; 103646788; -. DR Gramene; Zm00001d004358_T003; Zm00001d004358_P003; Zm00001d004358. DR KEGG; zma:103646788; -. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR Proteomes; UP000007305; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 300 396 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 488 552 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 300 396 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 488 552 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 552 552 {ECO:0000313|EMBL:AIB05337.1}. SQ SEQUENCE 552 AA; 61860 MW; D254369FDA91D68F CRC64; MPLPSDSGSG ARAMSKQFKV LLPTSFHKLR ISDELAGCFD AGEGEGAPEP TALVVSPFGK VWRVEVVRDG HGASLGRGWA EFLAAHGVGI GWFVVLRYEG GGALTVKVFD TSLCIKEFGA PAAVMPSKSC KSIFCKPQFI RIFHSNLSEK MMLPARFVKD YVSEECLNSR IAIIFSPIAK FWRVELKNDQ SGIFFTGGWS QFLDFHGIKN GEVLLLKYEG NMVFKFKAFG LSGCQKDFKN QNAGIQLNTK KQQETPPIRK RKSNDEKSSS EENKRLKTPV TSPSPSDPSL EKPYQIGTSS WIKKRINTYA LEQFLALSVK FCNSIGFRMA CTITLKTATN STRSWQVRGT AYKWHRYIIG VGWKSFCQDN RLKAGDLCTF NIIETTLWHV TITRSALAAD TFNKQKKPPC SSSRDKKGSS SREGAKRPKP SMAHFSKVQV PPSYARRCAY DVGPPPWIRK QMNASTIRNR LCLAPAFCNQ IELRRRCEIV LKTSINSNHS WRVGGLSQKK GSYIIGPGWK KFCTENRVKV GDVCTFNVIE TQLWHVVITR RC // ID A0A060D1M1_MAIZE Unreviewed; 409 AA. AC A0A060D1M1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB05185.1}; DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:ONM14667.1}; DE Flags: Fragment; GN Name=ABI12 {ECO:0000313|EMBL:AIB05185.1}; GN Synonyms=103646035 {ECO:0000313|EnsemblPlants:Zm00001d002562_P001}; GN ORFNames=ZEAMMB73_Zm00001d002562 {ECO:0000313|EMBL:ONM14667.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB05185.1}; RN [1] {ECO:0000313|EMBL:AIB05185.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ONM14667.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM14667.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d002562_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d002562_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727694; AIB05185.1; -; Genomic_DNA. DR EMBL; CM007648; ONM14667.1; -; Genomic_DNA. DR RefSeq; NP_001309881.1; NM_001322952.1. DR UniGene; Zm.152379; -. DR UniGene; Zm.33238; -. DR UniGene; Zm.37728; -. DR STRING; 4577.GRMZM2G102059_P01; -. DR EnsemblPlants; Zm00001d002562_T001; Zm00001d002562_P001; Zm00001d002562. DR GeneID; 103646035; -. DR Gramene; Zm00001d002562_T001; Zm00001d002562_P001; Zm00001d002562. DR KEGG; zma:103646035; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; DFRNINA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007305; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 199 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 199 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 30 {ECO:0000256|SAM:Coils}. FT NON_TER 409 409 {ECO:0000313|EMBL:AIB05185.1}. SQ SEQUENCE 409 AA; 43860 MW; C61786DE8AC15C97 CRC64; MEFASSSSRF SREEDEEEEQ EEEEEEEEAS PREIPFMTAA ATADTGAAAS SSSPSAAASS GPAAAPRSSD GAGASGSGGG GSDDVQVIEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDAAANEKG QLLSFEDRAG KLWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFC RGAGDTARDR LFIDWKRRAD SRDPHRMPRL PLPMAPVASP YGPWGGGGGG GAGGFFMPPA PPATLYEHHR FRQALDFRNI NAAAAPARQL LFFGSAGMPP RASMPQQQQP PPPPHPPLHS IMLVQPSPAP PTASVPMLLD SVPLVNSPTA ASKRVRLFGV NLDNPQPGTS AESSQDANAL SLRTPGWQRP GPLRFFESPQ RGAESSAASS PSSSSSSKRE AHSSLDLDL // ID A0A061DG18_THECC Unreviewed; 691 AA. AC A0A061DG18; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Cytochrome P450 {ECO:0000313|EMBL:EOX91269.1}; GN ORFNames=TCM_000515 {ECO:0000313|EMBL:EOX91269.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91269.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91269.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the cytochrome P450 family. CC {ECO:0000256|RuleBase:RU000461}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91269.1; -; Genomic_DNA. DR ProteinModelPortal; A0A061DG18; -. DR EnsemblPlants; EOX91269; EOX91269; TCM_000515. DR Gramene; EOX91269; EOX91269; TCM_000515. DR OMA; GRTETQG; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW. DR GO; GO:0016705; F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR001128; Cyt_P450. DR InterPro; IPR017972; Cyt_P450_CS. DR InterPro; IPR002401; Cyt_P450_E_grp-I. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR Pfam; PF00067; p450; 1. DR PRINTS; PR00463; EP450I. DR PRINTS; PR00385; P450. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF48264; SSF48264; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS00086; CYTOCHROME_P450; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Heme {ECO:0000256|RuleBase:RU000461}; KW Iron {ECO:0000256|RuleBase:RU000461}; KW Metal-binding {ECO:0000256|RuleBase:RU000461}; KW Monooxygenase {ECO:0000256|RuleBase:RU000461}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Oxidoreductase {ECO:0000256|RuleBase:RU000461}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 77613 MW; 094739FA6771C9AD CRC64; MQKIPPAFVR HFYGTIPKDA MLKNHTGKHW LVDLEEVEGG LTMTNGWQGF ASENSLEFGD FLIFEYDGKC LFDVEIFGRN GCNKAALSSN MTTTHAVNEK EIKEVDICNE PTQTCKQKYS VKNLGKALNA ATYVTPKGPY FVSNIPQSMR SAVYVPRSLL ASYGIKIKPE VVLLDQNGKK WPVMSKKSST HRKRVCTAPQ AGGALPVIGH MHLLGGHQLT HKTLGAMADK YGPVFSIRLG SHSALVLNSW EMARECFTVH DKVFSTRPVL TASKVLGYNY AMFGFAPYGS YWREIRRIAT IELLSSHRID MLKHIRASEV KTAVRELYKS WLSKGGGETG VLVDMKQWFG DLTHNIALRM VGGKRFFGPN ADCEEAEARR CQKVMRDSAY LFGVFVVSDA LPFIGWLDFQ GYEKAMKRTA KELDILLGGW LEEHKQKKHL GGGLKKEQDF MDVMLNILED AKITSFDADT INKATCLNLV LAGSDTTMIT LTWALSLLLN NPRVLKRAQD ELDMHVGKDR LLEESDIRNL VYLHAIVKET LRLYPPSPII FRASMEDCTL STGYHIPAGT RLMVNAWKIQ RDERVWPDPH VFKPERFLTS HKDMEFRGQT FELIPFGSGR RSCPGVSLAL QVVHSALASF LQSFEVSKPS KLEDIDMTES TGLTNLKATP LEVLFTPRLD SKLYGLGTEL I // ID A0A061DG19_THECC Unreviewed; 278 AA. AC A0A061DG19; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX91274.1}; GN ORFNames=TCM_000520 {ECO:0000313|EMBL:EOX91274.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91274.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91274.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91274.1; -; Genomic_DNA. DR EnsemblPlants; EOX91274; EOX91274; TCM_000520. DR Gramene; EOX91274; EOX91274; TCM_000520. DR OMA; CFLANIW; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 30518 MW; 4C1AE27502584030 CRC64; MAALKMARKP KQNPSFFKVL IGDFVNKLRI PPAFVKNFQG NVPTNFTLKS NSGSSWRVTV QNTEGSYFFC GGWSNFVEDQ GLDSGDFVVF YLVGKSSFDC VIYGPTGCGK KIVLKTKRKR GRPKKSNEVT PSEAGASSFQ KATRVSPGCR ITRAPARRVI NVGQQIVVVS EAISKHPSFT VVLKKYQKFS VVVPSSFARE AGLAEKRSTV IKDPKGRMWP LGISVGSRQV RLSAGWTKFR LENRLVAGDT LLFQYIRGTG NAIHVQIVGK AGYGNSGR // ID A0A061DG54_THECC Unreviewed; 567 AA. AC A0A061DG54; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX91270.1}; GN ORFNames=TCM_000516 {ECO:0000313|EMBL:EOX91270.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91270.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91270.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91270.1; -; Genomic_DNA. DR EnsemblPlants; EOX91270; EOX91270; TCM_000516. DR Gramene; EOX91270; EOX91270; TCM_000516. DR OMA; HEEQFIT; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 385 483 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 385 483 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 567 AA; 64464 MW; 9739F64C1CE0E6CC CRC64; MASSHRKGND HSTFTTESPH FFKIILPETL RDGKLGIPTK FVKKYGNGMS SPALLKVPNG EVWKVELTKS DGKVWLKNGW QEFLNHYSLE YGHFLVFRYE GNCNFHVIIF DRSASEIEYP YTSNNHGQHK ELPEEKIEES EGDNSIQILE DIAPSRKTRE KSHLSCLRPH KMMRSTNSAN KTESNLKSES LFPQFRHDGS PARKGDKSTS RHRIQKLKAD NKAKALQRAR AFKSENPFFL LVMQPSYVGF KSTCRLAIPN NFVRKHLMKE DCVVNLCNSN GKTWTVSFHC REKERKLNAS LQSGWKTFAN DNNIQVGDVC VFELTNCIEI SFKVCIYQGK TDVFHPVKRN AGKSSTGQDY QKPLNAFEKA KAIQIASAFR SENPSFAVVL QPSYVHLNKL SVPEKFARKF FKKKHNEVIL RLSNGKSWPV KYYQHSIRTP SAKLCNGWRK FVLDNKLEVG NVCVFELTEG IETSFKVTIY RKQAIEDANL GSSLADKSTE NQVESKVSLV INVDSDSVHD NGNMNQEAQN LNFSGLRPFI VSQVLTGLKL TLNEVKNGSS SKFEEMV // ID A0A061DG86_THECC Unreviewed; 491 AA. AC A0A061DG86; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein isoform 1 {ECO:0000313|EMBL:EOX91384.1}; GN ORFNames=TCM_000597 {ECO:0000313|EMBL:EOX91384.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91384.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91384.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91384.1; -; Genomic_DNA. DR EnsemblPlants; EOX91384; EOX91384; TCM_000597. DR Gramene; EOX91384; EOX91384; TCM_000597. DR Proteomes; UP000026915; Chromosome 1. DR ExpressionAtlas; A0A061DG86; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 434 489 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 491 AA; 55275 MW; ABF48C120AD4F31B CRC64; MDQRVKKEAE EIHQRTMSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKKKDKA LTERKEKQKS QSESRIKHEV SGPGGKHMSS KKNKGAGDGK CTPEIKSPAM IRAEEVQSNL EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTMI ILEDESGHQF HVKYYSDKTG LSAGWRQFCS VHNLLEGDVL IFQLVEPTKF KVYIIRANDL TELDGALGLL NLDAHTKQSD AEDAEIGITA CKSTKRKRPK SLPLAVVQKK NKRSGLQTNL GQPAEQSEND SEEVGSEVLE GFKLSVPTIQ FKDITSFENF SILVGDLVID SELSEDIRNK YFKLCCSQNS FLHENIIQGI NFKLIVGTIS ETVNIADAIR ACKLTTSQDE FDSWDKTLKA FDLLGMNVGF LRTRLRRLVN LAFESEGAAD ARRYVEAKME RAQTEDEIRN LEAKLAELKD TCKTFGVEIE SLQSQAETYE LRFEEEVQAS W // ID A0A061DGD2_THECC Unreviewed; 520 AA. AC A0A061DGD2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=AP2/B3-like transcriptional factor family protein isoform 2 {ECO:0000313|EMBL:EOX91385.1}; GN ORFNames=TCM_000597 {ECO:0000313|EMBL:EOX91385.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91385.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91385.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91385.1; -; Genomic_DNA. DR EnsemblPlants; EOX91385; EOX91385; TCM_000597. DR Gramene; EOX91385; EOX91385; TCM_000597. DR OMA; FWMGLPV; -. DR Proteomes; UP000026915; Chromosome 1. DR ExpressionAtlas; A0A061DGD2; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 463 518 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 520 AA; 58836 MW; 3BE705ACC53AE36D CRC64; MDQRVKKEAE EIHQRTMSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKKKDKA LTERKEKQKS QSESRIKHEV SGPGGKHMSS KKNKGAGDGK CTPEIKSPAM IRAEEVQSNL EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTMI ILEDESGHQF HVKYYSDKTG LSAGWRQFCS VHNLLEGDVL IFQLVEPTKF KVYIIRANDL TELDGALGLL NLDAHTKQSD AGKLLVWYLE YYACISDGLH YNRIFEKKKK EDAEIGITAC KSTKRKRPKS LPLAVVQKKN KRSGLQTNLG QPAEQSENDS EEVGSEVLEG FKLSVPTIQF KDITSFENFS ILVGDLVIDS ELSEDIRNKY FKLCCSQNSF LHENIIQGIN FKLIVGTISE TVNIADAIRA CKLTTSQDEF DSWDKTLKAF DLLGMNVGFL RTRLRRLVNL AFESEGAADA RRYVEAKMER AQTEDEIRNL EAKLAELKDT CKTFGVEIES LQSQAETYEL RFEEEVQASW // ID A0A061DGN9_THECC Unreviewed; 410 AA. AC A0A061DGN9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Thioredoxin superfamily protein isoform 2 {ECO:0000313|EMBL:EOX91267.1}; GN ORFNames=TCM_000513 {ECO:0000313|EMBL:EOX91267.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91267.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91267.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91267.1; -; Genomic_DNA. DR EnsemblPlants; EOX91267; EOX91267; TCM_000513. DR Gramene; EOX91267; EOX91267; TCM_000513. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 291 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 291 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 46700 MW; A3DED0BE634DD3B6 CRC64; MMNDEPLSMN MIPVLASLLL SNAFGLTNFL LVLQRIPRKF MSNFRENLSG TVYLRGPSGF MWAVEVERMF DEVVFGNGWQ NFVKDHSLAD ADFVVFRYDG NSTFNVVIFD LSGCEREGSY FVKKHTSACS NGRCGFRRED GEGSEEVIDL DKVHENHMQK EKLTKGKGNT ISKAVDTISQ LKATQEKHLR VGKSAIASGV IEILMDESEE SSGSATEASE DWSNNSVSLK CKSKKKEVGC LTNDSGKMKR PLDLPGSYNL YFISNRRKIT EEEKQRPRRL AKQYSSTRPS FSIVMKPTHV CKAFTVNIRE KWLDMHVPDK VRIALLRVAP DEKRWPVRIM RTKWRRGFAR GWGKFVLDNN LEEHDVCVFE LNEEGQANKK SIGFNVVIFR VLDEIVPLTR FSNTQPNASD // ID A0A061DGP3_THECC Unreviewed; 520 AA. AC A0A061DGP3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX91272.1}; GN ORFNames=TCM_000518 {ECO:0000313|EMBL:EOX91272.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91272.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91272.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91272.1; -; Genomic_DNA. DR EnsemblPlants; EOX91272; EOX91272; TCM_000518. DR Gramene; EOX91272; EOX91272; TCM_000518. DR OMA; CKDELEC; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 423 520 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 423 520 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 520 AA; 59936 MW; 5DBD782C02DDBCCE CRC64; MASPSNKASC SQREINPSMF TPKTPHFFKI ILEDTIRHSK LRFPRKFVTK YGDSLSSPVL LMVPSGSTWH VELIKSDGDV WLQNGWKEFA EHYSLKHGHF LVFKYQGDCN FQVLIFDMSA SEIEYPHISP NMDRDEVCQE PNKEEDAKDD SVEVLYETPR VRKTRQNSQT PCLRPRKILR RTTLSDKYKR DCEDVSSGEG YLKTKVPRGR HAFGDNENAT ALQRASAFKS ENFFFVVEMQ PSYINPGRKL CLPSSFITKC LKEKVGDVTL CTLDGKTWPA KYCCYLTNNK YTKAALHCGW TAFMQDNKLE LGDVCVFELI EQTKILLKVI IYRVSQDSSL VELYMFFPNV YWISIKLMYP RLYNIMRTNG SGGLNSLANC DNGRLSTQGS TKSRHFLMPP LSSHEKARAM LRASSFRSEN PFFKVVMQPA YLGARCSVNI PYKFAKRHVD EKEDRVILQV SNGRRWIVKF SVKVTNSGQR KARFYDTWRA FAQDNNLEVG DVCVFELINR DETSFKVSIF // ID A0A061DGW8_THECC Unreviewed; 488 AA. AC A0A061DGW8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein isoform 4 {ECO:0000313|EMBL:EOX91387.1}; GN ORFNames=TCM_000597 {ECO:0000313|EMBL:EOX91387.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91387.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91387.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91387.1; -; Genomic_DNA. DR EnsemblPlants; EOX91387; EOX91387; TCM_000597. DR Gramene; EOX91387; EOX91387; TCM_000597. DR Proteomes; UP000026915; Chromosome 1. DR ExpressionAtlas; A0A061DGW8; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 431 486 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 488 AA; 54960 MW; C44941AF73B6E4A5 CRC64; MDQRVKKEAE EIHQRTMSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKKKDKA LTERKEKQKS QSESRIKHEV SGPGGKHMSS KKNKGAGDGK CTPEIKSPAM IRAEEVQSNL EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTMI ILEDESGHQF HVKYYSDKTG LSAGWRQFCS VHNLLEGDVL IFQLVEPTKF KVYIIRANDL TELDGALGLL NLDAHTKQSD AEIGITACKS TKRKRPKSLP LAVVQKKNKR SGLQTNLGQP AEQSENDSEE VGSEVLEGFK LSVPTIQFKD ITSFENFSIL VGDLVIDSEL SEDIRNKYFK LCCSQNSFLH ENIIQGINFK LIVGTISETV NIADAIRACK LTTSQDEFDS WDKTLKAFDL LGMNVGFLRT RLRRLVNLAF ESEGAADARR YVEAKMERAQ TEDEIRNLEA KLAELKDTCK TFGVEIESLQ SQAETYELRF EEEVQASW // ID A0A061DHL1_THECC Unreviewed; 420 AA. AC A0A061DHL1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=DSBA oxidoreductase family protein isoform 1 {ECO:0000313|EMBL:EOX91266.1}; GN ORFNames=TCM_000513 {ECO:0000313|EMBL:EOX91266.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91266.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91266.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91266.1; -; Genomic_DNA. DR EnsemblPlants; EOX91266; EOX91266; TCM_000513. DR Gramene; EOX91266; EOX91266; TCM_000513. DR OMA; HKNSSRC; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 301 402 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 301 402 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 48415 MW; B32742F15BD16F13 CRC64; MQSQGMAPKS QNCRMMEKHK YWKEFQSNRH QFFKIMIGDF RNQLRIPRKF MSNFRENLSG TVYLRGPSGF MWAVEVERMF DEVVFGNGWQ NFVKDHSLAD ADFVVFRYDG NSTFNVVIFD LSGCEREGSY FVKKHTSACS NGRCGFRRED GEGSEEVIDL DKVHENHMQK EKLTKGKGNT ISKAVDTISQ LKATQEKHLR VGKSAIASGV IEILMDESEE SSGSATEASE DWSNNSVSLK CKSKKKEVGC LTNDSGKMKR PLDLPGSYNL YFISNRRKIT EEEKQRPRRL AKQYSSTRPS FSIVMKPTHV CKAFTVNIRE KWLDMHVPDK VRIALLRVAP DEKRWPVRIM RTKWRRGFAR GWGKFVLDNN LEEHDVCVFE LNEEGQANKK SIGFNVVIFR VLDEIVPLTR FSNTQPNASD // ID A0A061DHL4_THECC Unreviewed; 482 AA. AC A0A061DHL4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX91271.1}; GN ORFNames=TCM_000517 {ECO:0000313|EMBL:EOX91271.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91271.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91271.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91271.1; -; Genomic_DNA. DR EnsemblPlants; EOX91271; EOX91271; TCM_000517. DR Gramene; EOX91271; EOX91271; TCM_000517. DR OMA; CDGKVWL; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 482 AA; 54955 MW; AE7A8D22214ECE0C CRC64; MGPNLRPNGT VFRGIKLEIA KENYNLQRSM QMVILQKSND HPMFISESPH FFTIILPGTL RDGKLGIPTK FVKRYGNGMS SPALLRVPND EVWKVEPTKC DGKVWLKNGW QEFSNHYSLE YGHFLVFRYE GFCNFHVVIF DRSASEIEYP YGSNNHRQHK ELPEQKIEES EDADSLQILE DISPSRKTGE KSHLPCSRPH KMMRSANSAN KTESNLKCES LAPHFRHNGS PDRKADKSTT SHRIKKLNAD KKAKALQRAR AFKSENPFFL LVMQPSYVGL NGKWRLAIPN NFVWKHLMKE DCEVILCNSN GKTWTVSLYR RGNGRELLYA GLQTGWKTFV KDNNIQIGDV CVFELINCME ISFKVTIYQG QTDVFRPVKR NVGASSTIQG DMSSLHNQHP TEEFPVPKIE ENKRNASGEI LDDILLYTGR KINISNPRNL PCTYPPICAS LVSSTTAKGM PGIWQSGSDL DQSIRRHIGF YL // ID A0A061DHU7_THECC Unreviewed; 382 AA. AC A0A061DHU7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein isoform 3 {ECO:0000313|EMBL:EOX91386.1}; GN ORFNames=TCM_000597 {ECO:0000313|EMBL:EOX91386.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91386.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91386.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91386.1; -; Genomic_DNA. DR EnsemblPlants; EOX91386; EOX91386; TCM_000597. DR Gramene; EOX91386; EOX91386; TCM_000597. DR Proteomes; UP000026915; Chromosome 1. DR ExpressionAtlas; A0A061DHU7; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 325 380 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 382 AA; 43182 MW; 5C295B3371586206 CRC64; MIRAEEVQSN LEPEFPSFAK SLVRSHVGSC FWMGLPGMFC KIHLPRKDTM IILEDESGHQ FHVKYYSDKT GLSAGWRQFC SVHNLLEGDV LIFQLVEPTK FKVYIIRAND LTELDGALGL LNLDAHTKQS DAEDAEIGIT ACKSTKRKRP KSLPLAVVQK KNKRSGLQTN LGQPAEQSEN DSEEVGSEVL EGFKLSVPTI QFKDITSFEN FSILVGDLVI DSELSEDIRN KYFKLCCSQN SFLHENIIQG INFKLIVGTI SETVNIADAI RACKLTTSQD EFDSWDKTLK AFDLLGMNVG FLRTRLRRLV NLAFESEGAA DARRYVEAKM ERAQTEDEIR NLEAKLAELK DTCKTFGVEI ESLQSQAETY ELRFEEEVQA SW // ID A0A061DI23_THECC Unreviewed; 125 AA. AC A0A061DI23; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX91491.1}; GN ORFNames=TCM_000663 {ECO:0000313|EMBL:EOX91491.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91491.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91491.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91491.1; -; Genomic_DNA. DR EnsemblPlants; EOX91491; EOX91491; TCM_000663. DR Gramene; EOX91491; EOX91491; TCM_000663. DR OMA; KMEANVA; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 125 AA; 14429 MW; F0DBCBD5ABC2A284 CRC64; MALHFTKKLS KTDVVEKRLS LPTKYMKHLP GLRRGHAVNL PVMDVHGTEW HFRYSIRRKG HPKPVLSMGW GNFVKSKCLR PGDRIIFKME ANVAAAPGPL YIIGVKRRMR LLGKEVWTAV FLKRK // ID A0A061DJZ7_THECC Unreviewed; 1006 AA. AC A0A061DJZ7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_001906 {ECO:0000313|EMBL:EOX93054.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX93054.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX93054.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX93054.1; -; Genomic_DNA. DR EnsemblPlants; EOX93054; EOX93054; TCM_001906. DR Gramene; EOX93054; EOX93054; TCM_001906. DR OMA; YMSRQDL; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 816 898 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1006 AA; 111854 MW; F4B1FFBFDBEB9A49 CRC64; MRLSSSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLLCQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGNP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSAF PLRLKRPWPS ALPSFHGMLE SSLRMVEITH ISSRLHLKLG VFLIYTESIY FALPAFKDGD MSINSQLMWL QGGVGDQGIQ SLNFQGFGVA PWIQPRHDTS SLPGVQPYLY QAMGAAALQD MRTVDSSKIG SQSLLQFQQP QNTSNGTPAL IQRQMLQQSQ TQNAFLQSFQ ENQTAAQVQL LQQLQRPHLY NDQRQQQQQQ HQHQPQHHQQ QQSQQTQQLP QLSVPQQISN VVSAFPSTSA SQAQSSSLPV VASQCQQQTF PDSIGNSIAT SDVSSMQSIL GSLSQNGASH LLNLNGSNPV ISSSTLLSKP VAVEPQLSSG AANCVLPQVE QLGTARSNVS ELSNLLPPFP GREYSAYHGS TDPQNNLLFG VSIDSSSLML QHGMTNLKNI GNENDSLSLP YAASNFTSAS GTDFPLNSDM TTSSCVDESG YLQSSENVDQ VNPTTGTFLK VHKSGSFGRS LDISKFSSYD ELRCELARMF GLEGQLEDPQ RSGWQLVFVD RENDILLLGD DPWHADSPYI LVLKICAYQA TALLALRNLD FQFLYDADHI YRSSKFFLFP FNYFPGSTWE FVNNVWYIKI LSPHEVQQMG KEGLTPATSV PSQRLTHSSN HCDDYMSRQD LRSSGNGLAS MGSLEY // ID A0A061DK80_THECC Unreviewed; 913 AA. AC A0A061DK80; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_001906 {ECO:0000313|EMBL:EOX93055.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX93055.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX93055.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX93055.1; -; Genomic_DNA. DR EnsemblPlants; EOX93055; EOX93055; TCM_001906. DR Gramene; EOX93055; EOX93055; TCM_001906. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 778 863 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 913 AA; 101041 MW; 3FC4B0519D1EDF5F CRC64; MRLSSSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLLCQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGNP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSAF PLRLKRPWPS ALPSFHAFKD GDMSINSQLM WLQGGVGDQG IQSLNFQGFG VAPWIQPRHD TSSLPGVQPY LYQAMGAAAL QDMRTVDSSK IGSQSLLQFQ QPQNTSNGTP ALIQRQMLQQ SQTQNAFLQS FQENQTAAQV QLLQQLQRPH LYNDQRQQQQ QQHQHQPQHH QQQQSQQTQQ LPQLSVPQQI SNVVSAFPST SASQAQSSSL PVVASQCQQQ TFPDSIGNSI ATSDVSSMQS ILGSLSQNGA SHLLNLNGSN PVISSSTLLS KPVAVEPQLS SGAANCVLPQ VEQLGTARSN VSELSNLLPP FPGREYSAYH GSTDPQNNLL FGVSIDSSSL MLQHGMTNLK NIGNENDSLS LPYAASNFTS ASGTDFPLNS DMTTSSCVDE SGYLQSSENV DQVNPTTGTF LKVHKSGSFG RSLDISKFSS YDELRCELAR MFGLEGQLED PQRSGWQLVF VDRENDILLL GDDPWQEFVN NVWYIKILSP HEVQQMGKEG LTPATSVPSQ RLTHSSNHCD DYMSRQDLRS SGNGLASMGS LEY // ID A0A061DMG9_THECC Unreviewed; 740 AA. AC A0A061DMG9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=ABI3, putative isoform 4 {ECO:0000313|EMBL:EOX94014.1}; GN ORFNames=TCM_003056 {ECO:0000313|EMBL:EOX94014.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94014.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94014.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94014.1; -; Genomic_DNA. DR EnsemblPlants; EOX94014; EOX94014; TCM_003056. DR Gramene; EOX94014; EOX94014; TCM_003056. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 600 702 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 600 702 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 740 AA; 83379 MW; 33A8A2C04D6852C1 CRC64; MKGVQQHLRC EDLQAGARNE ANPSGFDAPE VERVMGTEER EIWLDRQQDD LLDVNDASIF YGDFPPLPDF PCMSSSSSSS STPALVKAFA CSSSASTASS CSSAASWAVL KSDADEDVER KNNCHGHHHH HHHHHHHHHH NHHHHHGQHD LVDGTPAALS STVSMEILQP SDHVMHGVDC MDVMENFGYM DLLDNNDFFD PSSIFQHDDT GLEEFQQEQK PQQEQSQQPE QEVPTIYSKN EETQEEKSSD DLAMVFLEWL KTNKETVSAE DLRRVKIKKA TIECAARRLG GGKEAMKQLL KLILEWVQTN HLQKRRIKES ASNNNIDIPY QYQDNFQNPN PNPNPNSNPN LSCDSGPPPE PNSCFSQPPW IPQPTYVTDP VAVVAGFAPT VGYMGDPFLN GAPNINSHPY QPPTDYPMLD SAQTWPPSQF ALASQYNSFP DNNLHPAPHQ PSAFPGYGNQ YPYQYIQRHN NEERLVRLGS SATKEARKKR MARQRRFAPH HRNHNYHNNQ QSQHQNQSVD QHVRLIKDNC AAAAQANSGN WVYWPAVACG MASNPPLLPG DVPVVHPVDR PSMQGQTYQR HVASDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISIAME DIGTSRVWNM RYRFWPNNKS RMYLLENTGD FVRTNGLQEG DFIVIYSDVK CSKYLIRGVK VRQSGPKSET KRPGKSQKNQ HSNSPAAAAV NGSSSSPIKQ // ID A0A061DMT1_THECC Unreviewed; 727 AA. AC A0A061DMT1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=ABI3, putative isoform 5 {ECO:0000313|EMBL:EOX94015.1}; GN ORFNames=TCM_003056 {ECO:0000313|EMBL:EOX94015.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94015.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94015.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94015.1; -; Genomic_DNA. DR EnsemblPlants; EOX94015; EOX94015; TCM_003056. DR Gramene; EOX94015; EOX94015; TCM_003056. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 587 689 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 587 689 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 727 AA; 81769 MW; 47ED2639ED295531 CRC64; MKGVQQHLRC EDLQAGARNE ANPSGFDAPE VERVMGTEER EIWLDRQQDD LLDVNDASIF YGDFPPLPDF PCMSSSSSSS STPALVKAFA CSSSASTASS CSSAASWAVL KSDADEDVER KNNCHGHHHH HHHHHHHHHH NHHHHHGQHD LVDGTPAALS STVSMEILQP SDHVMHGVDC MDVMENFGYM DLLDNNDFFD PSSIFQHDDT GLEEFQQEQK PQQEQSQQPE QEVPTIYSKN EETQEEKSSD DLAMVFLEWL KTNKETVSAE DLRRVKIKKA TIECAARRLG GGKEAMKQLL KLILEWVQTN HLQKRRIKES ASNNNIDIPY QYQDNFQNPN PNPNPNSNPN LSCDSGPPPE PNSCFSQPPW IPQPTYVTDP VAVVAGFAPT VGYMGDPFLN GAPNINSHPY QPPTDYPMLD SAQTWPPSQF ALASQYNSFP DNNLHPAPHQ PSAFPGYGNQ YPYQYIQRHN NEERLVRLGS SATKEARKKR MARQRRFAPH HRNHNYHNNQ QSQHQNQSVD QHVRLIKDNC AAAAQANSGN WVYWPAVACG MASNPPLLPG DVPVVHPVDR PSMQGQTYQR HVASDRRQKV LKQSDVGNLG RIVLPKKEAE THLPELEARD GISIAMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGDFVR TNGLQEGDFI VIYSDVKCSK YLIRGVKVRQ SGPKSETKRP GKSQKNQHSN SPAAAAVNGS SSSPIKQ // ID A0A061DMT4_THECC Unreviewed; 890 AA. AC A0A061DMT4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX91273.1}; GN ORFNames=TCM_000519 {ECO:0000313|EMBL:EOX91273.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91273.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX91273.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX91273.1; -; Genomic_DNA. DR EnsemblPlants; EOX91273; EOX91273; TCM_000519. DR Gramene; EOX91273; EOX91273; TCM_000519. DR OMA; DKERRIC; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 488 587 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 740 838 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 488 587 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 740 838 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 890 AA; 100601 MW; 5DF679B2C58638A5 CRC64; MTSHQRRSDN EHSMFTSKTP HFFKVILDET FRDGKLGIPT NFVRKYGRQL SSPIRLEVPS GAVWQVELTK CDERVWLQKG WQEFAEHNSL EYGYFLVFRY EGNAHFHVLI FDTSASEIEY PHTNTTEEDD GFDNALVCKK SKGKSDIPYP QPHKEMKVDS PNEIGTHLKS KISAPAAMGG GVSGQRSPQI EVLETVGHLT ADEKTKALQK ASGFKTKNPF FMVVMQPSYV SFSYRMSVPD GFARKYFKMT QGNVILRISS GQSWPAKYYC RPNIDNPRAQ LRDGWQEFAK HNALEVGDVC VFELTRTSPE ILLKVVICKR FFEDAIAARP LAGGSIAYRV KKRRLFSDTE TNCLQNQPAI REYRVPKTEQ NENIHTSIEI LDDFPLNQIT KKKLPFPGFQ PCRMMKTNPS QVKGIELGKQ KTSLDFQYST NELGGEFKFS GKDESVGMSG AQRCSKPDFL GRMQPLTTTE KKIALKRAMA FKSANPSFTV VMQPSYVLPG GSLSIPSQFV KRYFKKNGEV TLRVSDGRTW IVDYNGEGDG QCPKGKFRSR SWRAFVLDNN LKVGDVCVFE LIKANGNSFD VVIFPDANIA SCSSSKLDSR YQCKEAEDEG SIEILECTAP CQKTREKSSI QCPRPQKMMK INMINKTEKI LESEYIDPRF RPFCNKACGI KLEEPKGSTS SSCCKQEVGL KPATRTGTST EKGWECPEQA EILRSQKLTA KVKAKTLRIA KAFNSKNPFF LVVIQPSHIS RNYKMCIPSN FARKYFTKTH GGETVLCLSD GKSWSVKYYR RGDDGNPRGQ FSGGWKKFAL DNNLVVGDVC VFELLKGADI SFKVLRDIHA RPRQLLLQTF DSSEESCSRL ICILAVWTYH LSLSRNILSQ IQKCNPSSCE // ID A0A061DNK1_THECC Unreviewed; 742 AA. AC A0A061DNK1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=ABI3, putative isoform 2 {ECO:0000313|EMBL:EOX94012.1}; GN ORFNames=TCM_003056 {ECO:0000313|EMBL:EOX94012.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94012.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94012.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94012.1; -; Genomic_DNA. DR EnsemblPlants; EOX94012; EOX94012; TCM_003056. DR Gramene; EOX94012; EOX94012; TCM_003056. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 600 704 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 600 704 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 742 AA; 83683 MW; 2C65D6DF4CC256D1 CRC64; MKGVQQHLRC EDLQAGARNE ANPSGFDAPE VERVMGTEER EIWLDRQQDD LLDVNDASIF YGDFPPLPDF PCMSSSSSSS STPALVKAFA CSSSASTASS CSSAASWAVL KSDADEDVER KNNCHGHHHH HHHHHHHHHH NHHHHHGQHD LVDGTPAALS STVSMEILQP SDHVMHGVDC MDVMENFGYM DLLDNNDFFD PSSIFQHDDT GLEEFQQEQK PQQEQSQQPE QEVPTIYSKN EETQEEKSSD DLAMVFLEWL KTNKETVSAE DLRRVKIKKA TIECAARRLG GGKEAMKQLL KLILEWVQTN HLQKRRIKES ASNNNIDIPY QYQDNFQNPN PNPNPNSNPN LSCDSGPPPE PNSCFSQPPW IPQPTYVTDP VAVVAGFAPT VGYMGDPFLN GAPNINSHPY QPPTDYPMLD SAQTWPPSQF ALASQYNSFP DNNLHPAPHQ PSAFPGYGNQ YPYQYIQRHN NEERLVRLGS SATKEARKKR MARQRRFAPH HRNHNYHNNQ QSQHQNQSVD QHVRLIKDNC AAAAQANSGN WVYWPAVACG MASNPPLLPG DVPVVHPVDR PSMQGQTYQR HVASDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISIAME DIGTSRVWNM RYRFRFWPNN KSRMYLLENT GDFVRTNGLQ EGDFIVIYSD VKCSKYLIRG VKVRQSGPKS ETKRPGKSQK NQHSNSPAAA AVNGSSSSPI KQ // ID A0A061DPJ3_THECC Unreviewed; 746 AA. AC A0A061DPJ3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=ABI3, putative isoform 1 {ECO:0000313|EMBL:EOX94011.1}; GN ORFNames=TCM_003056 {ECO:0000313|EMBL:EOX94011.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94011.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94011.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94011.1; -; Genomic_DNA. DR EnsemblPlants; EOX94011; EOX94011; TCM_003056. DR Gramene; EOX94011; EOX94011; TCM_003056. DR OMA; EIWLDDH; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 606 708 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 606 708 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 746 AA; 84243 MW; 528580016D7A8120 CRC64; MWVSWSLDHH KQHLRCEDLQ AGARNEANPS GFDAPEVERV MGTEEREIWL DRQQDDLLDV NDASIFYGDF PPLPDFPCMS SSSSSSSTPA LVKAFACSSS ASTASSCSSA ASWAVLKSDA DEDVERKNNC HGHHHHHHHH HHHHHHNHHH HHGQHDLVDG TPAALSSTVS MEILQPSDHV MHGVDCMDVM ENFGYMDLLD NNDFFDPSSI FQHDDTGLEE FQQEQKPQQE QSQQPEQEVP TIYSKNEETQ EEKSSDDLAM VFLEWLKTNK ETVSAEDLRR VKIKKATIEC AARRLGGGKE AMKQLLKLIL EWVQTNHLQK RRIKESASNN NIDIPYQYQD NFQNPNPNPN PNSNPNLSCD SGPPPEPNSC FSQPPWIPQP TYVTDPVAVV AGFAPTVGYM GDPFLNGAPN INSHPYQPPT DYPMLDSAQT WPPSQFALAS QYNSFPDNNL HPAPHQPSAF PGYGNQYPYQ YIQRHNNEER LVRLGSSATK EARKKRMARQ RRFAPHHRNH NYHNNQQSQH QNQSVDQHVR LIKDNCAAAA QANSGNWVYW PAVACGMASN PPLLPGDVPV VHPVDRPSMQ GQTYQRHVAS DRRQGWKPEK NLRFLLQKVL KQSDVGNLGR IVLPKKEAET HLPELEARDG ISIAMEDIGT SRVWNMRYRF WPNNKSRMYL LENTGDFVRT NGLQEGDFIV IYSDVKCSKY LIRGVKVRQS GPKSETKRPG KSQKNQHSNS PAAAAVNGSS SSPIKQ // ID A0A061DQD7_THECC Unreviewed; 755 AA. AC A0A061DQD7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_004526 {ECO:0000313|EMBL:EOX94930.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94930.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94930.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94930.1; -; Genomic_DNA. DR EnsemblPlants; EOX94930; EOX94930; TCM_004526. DR Gramene; EOX94930; EOX94930; TCM_004526. DR OMA; QCKNCCS; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 187 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 657 741 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 187 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 755 AA; 85515 MW; D5FED502110685CE CRC64; MPFLFSLSLL LLICCIFLIL GKKVSFFYSV SSFWIYRKER KREMYGERNG VKAKVTSKSR KHIDVDGLRR PPNNQGEKDD LYVKLWHACA GPSVYAPRAG EKVFYFPQGH MEQVEAYMNK DGTMEMPIYN LPSKILCRVA HVQLKAETGT DEVFAQITLL PEAEQDELSM EHRNYQALPR EAHPRIFSKK LTPSDTNTHG GFSVPKRHAD DGCLPPLDMS QHTPQQDLVA IDLHGSEWRF RHIFRGQPKR HLLTSGWSTF VTSKKLVAGD TFIFLRGDNG ELHVGVHRAT TLMNNTSTSV ISGHSMRHGI LASAFHAFST RSMFTIYYRP WTSSSEFIIP LDQYMKSAEI VYSIGTRFRM QSEGKECGEQ RALGTIIGTE DVDHIRWPNS EWRCLKVKLD PTSDANFRPE RVCPWNIEPI ESTNRKKPFI LRQQKRARTD DASSPGFSSL LMDGMWCGSV KYESQSSSGV LQGQEDDTDV NQSSALRQPL PHLVLPLHPD CASMQPQMEN QLEIQVPICN SFYQYTSSRA LYSGGKVACL GLHNNWSPTF SSYGVDDDAL ARRKFSVPYV NSQESRTLEL RNENETSLCE PTGGHRCMIF GVNLVNGPPE LPSRQLLTSS ELKRLCSIPP TSQSSVSEPS KVTSSKQCNN SCSVSNRSCT KVLKYGTALG RSVDLTRFNG YENLISELDR MFDFKGRLIN GSSGWHVTYT DDEGDMMLLG DYPWQKFQYE VRRIVICPME EIDRLNQSSP NSTSQ // ID A0A061DR78_THECC Unreviewed; 741 AA. AC A0A061DR78; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_004526 {ECO:0000313|EMBL:EOX94932.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94932.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94932.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94932.1; -; Genomic_DNA. DR EnsemblPlants; EOX94932; EOX94932; TCM_004526. DR Gramene; EOX94932; EOX94932; TCM_004526. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 187 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 657 741 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 187 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 741 AA; 83762 MW; 36CC13B9344583FF CRC64; MPFLFSLSLL LLICCIFLIL GKKVSFFYSV SSFWIYRKER KREMYGERNG VKAKVTSKSR KHIDVDGLRR PPNNQGEKDD LYVKLWHACA GPSVYAPRAG EKVFYFPQGH MEQVEAYMNK DGTMEMPIYN LPSKILCRVA HVQLKAETGT DEVFAQITLL PEAEQDELSM EHRNYQALPR EAHPRIFSKK LTPSDTNTHG GFSVPKRHAD DGCLPPLDMS QHTPQQDLVA IDLHGSEWRF RHIFRGQPKR HLLTSGWSTF VTSKKLVAGD TFIFLRGDNG ELHVGVHRAT TLMNNTSTSV ISGHSMRHGI LASAFHAFST RSMFTIYYRP WTSSSEFIIP LDQYMKSAEI VYSIGTRFRM QSEGKECGEQ RALGTIIGTE DVDHIRWPNS EWRCLKVKLD PTSDANFRPE RVCPWNIEPI ESTNRKKPFI LRQQKRARTD DASSPGFSSL LMDGMWCGSV KYESQSSSGV LQGQEDDTDV NQSSALRQPL PHLVLPLHPD CASMQPQMEN QLEIQVPICN SFYQYTSSRA LYSGGKVACL GLHNNWSPTF SSYGVDDDAL ARRKFSVPYV NSQESRTLEL RNENETSLCE PTGGHRCMIF GVNLVNGPPE LPSRQLLTSS ELKRLCSIPP TSQSSVSEPS KVTSSKQCNN SCSVSNRSCT KVLKYGTALG RSVDLTRFNG YENLISELDR MFDFKGRLIN GSSGWHVTYT DDEGDMMLLG DYPWHTRSEG LSSAQWKKLT D // ID A0A061DS57_THECC Unreviewed; 702 AA. AC A0A061DS57; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_004526 {ECO:0000313|EMBL:EOX94931.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94931.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94931.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94931.1; -; Genomic_DNA. DR EnsemblPlants; EOX94931; EOX94931; TCM_004526. DR Gramene; EOX94931; EOX94931; TCM_004526. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 187 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 187 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 702 AA; 79221 MW; BA751C62BC10325E CRC64; MPFLFSLSLL LLICCIFLIL GKKVSFFYSV SSFWIYRKER KREMYGERNG VKAKVTSKSR KHIDVDGLRR PPNNQGEKDD LYVKLWHACA GPSVYAPRAG EKVFYFPQGH MEQVEAYMNK DGTMEMPIYN LPSKILCRVA HVQLKAETGT DEVFAQITLL PEAEQDELSM EHRNYQALPR EAHPRIFSKK LTPSDTNTHG GFSVPKRHAD DGCLPPLDMS QHTPQQDLVA IDLHGSEWRF RHIFRGQPKR HLLTSGWSTF VTSKKLVAGD TFIFLRGDNG ELHVGVHRAT TLMNNTSTSV ISGHSMRHGI LASAFHAFST RSMFTIYYRP WTSSSEFIIP LDQYMKSAEI VYSIGTRFRM QSEGKECGEQ RALGTIIGTE DVDHIRWPNS EWRCLKVKLD PTSDANFRPE RVCPWNIEPI ESTNRKKPFI LRQQKRARTD DASSPGFSSL LMDGMWCGSV KYESQSSSGV LQGQEDDTDV NQSSALRQPL PHLVLPLHPD CASMQPQMEN QLEIQVPICN SFYQYTSSRA LYSGGKVACL GLHNNWSPTF SSYGVDDDAL ARRKFSVPYV NSQESRTLEL RNENETSLCE PTGGHRCMIF GVNLVNGPPE LPSRQLLTSS ELKRLCSIPP TSQSSVSEPS KVTSSKQCNN SCSVSNRSCT KVPLLFRLSV HFCECKNEGH LLCILVSSCS GAQVWDCTWK IS // ID A0A061DSE7_THECC Unreviewed; 923 AA. AC A0A061DSE7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_005126 {ECO:0000313|EMBL:EOX95679.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX95679.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX95679.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX95679.1; -; Genomic_DNA. DR EnsemblPlants; EOX95679; EOX95679; TCM_005126. DR Gramene; EOX95679; EOX95679; TCM_005126. DR OMA; KMSFEGE; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 167 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 627 708 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 167 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 923 AA; 104103 MW; 546F6D3CC34F5CE0 CRC64; MNSYITVVSK TFVCFLAIVF LVLVLLLSLH RRYDLVWMAH VEGNPRGSSI AHAESGLGGD DLYPELWKLC AGPVVEIPRV QERVFYFAQG HMEQLEASTN QELNHQAPLF NLHSKILCRV LHVQLMAEQE TDEVYAQITL QPEADQSEPT SPDPCPTEAP KRTVNSFCKI LTASDTSTHG GFSVLRKHAT DCLPPLDMSQ ATPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSTMPSSVI SSQSMHLGVL ATAAHAVTTH TLFVVYYKPR TSQFIIGVNK YLEAIKNGFS VGMRFKMRFE GEDSPERRFT GTIVGVGDIS PHWSESKWRS LKIQWDEPAT IQRPERVSPW EIEPFVPSAS INLVQPAVKS KRPRPVDIPA SEITTNSAGS AFWCRGSTQS HELTQVGSTV EVQSSETQVM WPIRQKEIDK CLVNSSGGYN SRTRPENVWP PPHVNVSLNL FRDSMDDNNK TGTPRTVLTG YASSVQSRPS NGLMLDQVEK AKKSETSTSC RLFGFNLTDS SSAAGPLDKE QTSTTVDYNG VKGSTLAASD VDQNPETSKP SKEQKLVASE TSTKEMQGKL GAATSMRTRT KVHMQGIAVG RAVDLTVLKG YDDLINELEK MFDIKGELHP RGKWAVVFTD DEGDMMLVGD DPWTEFCKMV RKIFIYSSEE VKKMSARCKF PASSLEGEGT VVSLDSEHRE PKHLWIPFTC EADFTRYRRR RKAMGLCRAR AKRRKSLFAK EVLWRKNGCA RKTGADAGMG ARGNERMGSR ARWVSCPVPF AKIFKMRRGK LGQGVVFMEI LLLLKANCGR QKCDFLLGWW KIHLILTFKI WDDHHSSSPQ RFNFPTLFYY FLRNKVYIQS LGEKLRRQPP VIIIYRENYS SFF // ID A0A061DSL8_THECC Unreviewed; 643 AA. AC A0A061DSL8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_005126 {ECO:0000313|EMBL:EOX95680.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX95680.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX95680.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX95680.1; -; Genomic_DNA. DR EnsemblPlants; EOX95680; EOX95680; TCM_005126. DR Gramene; EOX95680; EOX95680; TCM_005126. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 643 AA; 71255 MW; 49AAD499A251BC8D CRC64; MAHVEGNPRG SSIAHAESGL GGDDLYPELW KLCAGPVVEI PRVQERVFYF AQGHMEQLEA STNQELNHQA PLFNLHSKIL CRVLHVQLMA EQETDEVYAQ ITLQPEADQS EPTSPDPCPT EAPKRTVNSF CKILTASDTS THGGFSVLRK HATDCLPPLD MSQATPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGVRR LARQQSTMPS SVISSQSMHL GVLATAAHAV TTHTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM RFEGEDSPER RFTGTIVGVG DISPHWSESK WRSLKIQWDE PATIQRPERV SPWEIEPFVP SASINLVQPA VKSKRPRPVD IPASEITTNS AGSAFWCRGS TQSHELTQVG STVEVQSSET QVMWPIRQKE IDKCLVNSSG GYNSRTRPEN VWPPPHVNVS LNLFRDSMDD NNKTGTPRTV LTGYASSVQS RPSNGLMLDQ VEKAKKSETS TSCRLFGFNL TDSSSAAGPL DKEQTSTTVD YNGVKGSTLA ASDVDQNPET SKPSKEQKLV ASETSTKEMQ GKLGAATSMR TRTKVEFCKM VRKIFIYSSE EVKKMSARCK FPASSLEGEG TVVSLDSEHR SET // ID A0A061DTX9_THECC Unreviewed; 421 AA. AC A0A061DTX9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX95541.1}; GN ORFNames=TCM_005014 {ECO:0000313|EMBL:EOX95541.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX95541.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX95541.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX95541.1; -; Genomic_DNA. DR EnsemblPlants; EOX95541; EOX95541; TCM_005014. DR Gramene; EOX95541; EOX95541; TCM_005014. DR OMA; YNLYNHQ; -. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 421 AA; 48193 MW; 98731EF8C132D169 CRC64; MNFVLEEKGY CNNEEEDDEE VIRETSNFPF SSSSSSASSK YKDIAPQQHQ NLWLRTLDSQ ADYKSQESAI NFDKKLELMD LSLGNNNEES NIGSCRGGDS SRSIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS SSNEKGLLLN FEDRNGKSWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGVG ESGKDRLFID WRRRPNAPDP TSLAHFQLQN QLNFPQSVRW GRLYSLPPQP MCMPRNYEPL HRLNYSIYPY NHHHHHQQQQ QLQLQQQQQQ HHQAFTYGNV AQYHLRSSSG SHHHHQYHQI GAVQEGGGEP MVIDSVPVVQ GNKTAAKRLR LFGVNMECPT QDESSSTFPH GTNTIGSDDS PHFSFSSLQS RLSNNNNTPL SGMEAEYSKK GKSSLSIDLD L // ID A0A061DVG8_THECC Unreviewed; 733 AA. AC A0A061DVG8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=ABI3, putative isoform 3 {ECO:0000313|EMBL:EOX94013.1}; GN ORFNames=TCM_003056 {ECO:0000313|EMBL:EOX94013.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94013.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX94013.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001879; EOX94013.1; -; Genomic_DNA. DR EnsemblPlants; EOX94013; EOX94013; TCM_003056. DR Gramene; EOX94013; EOX94013; TCM_003056. DR Proteomes; UP000026915; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 593 695 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 593 695 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 733 AA; 82632 MW; 66A6E09DF3D0E7D0 CRC64; MWVSWSLDHH KQHLRCEDLQ AGARNEANPS GFDAPEVERV MGTEEREIWL DRQQDDLLDV NDASIFYGDF PPLPDFPCMS SSSSSSSTPA LVKAFACSSS ASTASSCSSA ASWAVLKSDA DEDVERKNNC HGHHHHHHHH HHHHHHNHHH HHGQHDLVDG TPAALSSTVS MEILQPSDHV MHGVDCMDVM ENFGYMDLLD NNDFFDPSSI FQHDDTGLEE FQQEQKPQQE QSQQPEQEVP TIYSKNEETQ EEKSSDDLAM VFLEWLKTNK ETVSAEDLRR VKIKKATIEC AARRLGGGKE AMKQLLKLIL EWVQTNHLQK RRIKESASNN NIDIPYQYQD NFQNPNPNPN PNSNPNLSCD SGPPPEPNSC FSQPPWIPQP TYVTDPVAVV AGFAPTVGYM GDPFLNGAPN INSHPYQPPT DYPMLDSAQT WPPSQFALAS QYNSFPDNNL HPAPHQPSAF PGYGNQYPYQ YIQRHNNEER LVRLGSSATK EARKKRMARQ RRFAPHHRNH NYHNNQQSQH QNQSVDQHVR LIKDNCAAAA QANSGNWVYW PAVACGMASN PPLLPGDVPV VHPVDRPSMQ GQTYQRHVAS DRRQKVLKQS DVGNLGRIVL PKKEAETHLP ELEARDGISI AMEDIGTSRV WNMRYRFWPN NKSRMYLLEN TGDFVRTNGL QEGDFIVIYS DVKCSKYLIR GVKVRQSGPK SETKRPGKSQ KNQHSNSPAA AAVNGSSSSP IKQ // ID A0A061DWD8_THECC Unreviewed; 171 AA. AC A0A061DWD8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX97124.1}; GN ORFNames=TCM_006224 {ECO:0000313|EMBL:EOX97124.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97124.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97124.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97124.1; -; Genomic_DNA. DR EnsemblPlants; EOX97124; EOX97124; TCM_006224. DR Gramene; EOX97124; EOX97124; TCM_006224. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 58 157 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 58 157 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 171 AA; 19254 MW; 3908B9D631EF12A8 CRC64; MQKNRISSLN RDKSRCLAVG NIKDKLQTCL LLSSECFPMP LIKSDSFAEK KTVVSMAIIF SKILTKTDVE KRLSIPTKHL KSFPCFQGGH AVNFRAIDES GKVWPLQCSI RKGKYLKPVV FRGWVEFVRS NKLEVSDKIK FYGEPGGEYM IKVKKPVKVF GAIIAYAPAH G // ID A0A061DWM2_THECC Unreviewed; 117 AA. AC A0A061DWM2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97169.1}; GN ORFNames=TCM_006256 {ECO:0000313|EMBL:EOX97169.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97169.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97169.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97169.1; -; Genomic_DNA. DR EnsemblPlants; EOX97169; EOX97169; TCM_006256. DR Gramene; EOX97169; EOX97169; TCM_006256. DR OMA; VRDRSHR; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13690 MW; 70EA70AC834C7E43 CRC64; MELFTKRLTQ TDIDKRLAIP TNSLVYFPGF KGNHSVELKV KDKSHRLWTF RCSIRKKRYL KPVFSSGWLE FIRSNNLRIG DKVSVRLEQG HVSGVEYGIE VQRKIRLLGK DVWADVL // ID A0A061DWM6_THECC Unreviewed; 101 AA. AC A0A061DWM6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97174.1}; GN ORFNames=TCM_006265 {ECO:0000313|EMBL:EOX97174.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97174.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97174.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97174.1; -; Genomic_DNA. DR EnsemblPlants; EOX97174; EOX97174; TCM_006265. DR Gramene; EOX97174; EOX97174; TCM_006265. DR OMA; ERNDGHD; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 101 AA; 11435 MW; 89C986DEB70FF817 CRC64; MAIFEKTIDG DDINQLTITK KFDAEPFPSA AGGGAMTVKD EQGSLWTFKY KVKSRNKRVL SGHWVHFVRN NRVRVGDRVA ISNNDGWSSE AEYKIEVIRG F // ID A0A061DWN0_THECC Unreviewed; 103 AA. AC A0A061DWN0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97179.1}; GN ORFNames=TCM_006272 {ECO:0000313|EMBL:EOX97179.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97179.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97179.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97179.1; -; Genomic_DNA. DR EnsemblPlants; EOX97179; EOX97179; TCM_006272. DR Gramene; EOX97179; EOX97179; TCM_006272. DR OMA; RELTITC; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 103 AA; 11638 MW; 4B22D438D91BCD55 CRC64; MAIVSKMIDE GDMKQLTITK NFDGEPFPSA AHGGKMRVID EQRTLWRFTY KVKSTNKRVL SGPWEQFVQN NSVRVGDTVA IDNNDRWSSG AAEYKIEVIS RGS // ID A0A061DWZ8_THECC Unreviewed; 117 AA. AC A0A061DWZ8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97170.1}; GN ORFNames=TCM_006258 {ECO:0000313|EMBL:EOX97170.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97170.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97170.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97170.1; -; Genomic_DNA. DR EnsemblPlants; EOX97170; EOX97170; TCM_006258. DR Gramene; EOX97170; EOX97170; TCM_006258. DR OMA; EGAHELE; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13674 MW; CA44F6D89E00F395 CRC64; MEVFIKRLTQ TDTNKRLAIP TNSLVYFPGF RGNHSVELKV KDKSHRLWTF HCSIRKKRYL KPVFSSGWLE FIRSNNLRIG DKVSFRLEQG HVSGVEYGIA VQRKIRLLGK DVWADVL // ID A0A061DX08_THECC Unreviewed; 359 AA. AC A0A061DX08; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein isoform 2 {ECO:0000313|EMBL:EOX97185.1}; GN ORFNames=TCM_006281 {ECO:0000313|EMBL:EOX97185.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97185.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97185.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97184.1; -; Genomic_DNA. DR EMBL; CM001880; EOX97185.1; -; Genomic_DNA. DR EnsemblPlants; EOX97184; EOX97184; TCM_006281. DR EnsemblPlants; EOX97185; EOX97185; TCM_006281. DR Gramene; EOX97184; EOX97184; TCM_006281. DR Gramene; EOX97185; EOX97185; TCM_006281. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 42046 MW; 990CBFB84A09D0A6 CRC64; MSNFEAKNFF KVYLPKLSFE RMSIPPTAVV CSNGLMPMPA TATLRNCKGQ CRHVELNKCD GRMFFEKGWR RFIDDNSIKE EDILVFSYVG CSVFDVKVYG FDGCEKNVSY LVEKGESGEE QGQEDDEEED YGYQEEGEDS VLEMEDDDDD DGYLEEGEDS DLEMKREEEN EEVLDTLTNR RGQRKINKRN SGLHEGLAAV NDEETTSMEV EYEELNPERY VQELNPYFVA RTRLGRGNEL YVPSTVIRDY DLILEDNQEI TFLDPYDRKK IGKVRKWKDR RTCIIGWRSF CNRNRVNQER DVCICEFLLE NENEQKPKFM KVHIIRGKHT KSQKSTLKHY QKKHSDKTLP AIKSKMLLV // ID A0A061DXM1_THECC Unreviewed; 122 AA. AC A0A061DXM1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX97142.1}; GN ORFNames=TCM_006241 {ECO:0000313|EMBL:EOX97142.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97142.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97142.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97142.1; -; Genomic_DNA. DR EnsemblPlants; EOX97142; EOX97142; TCM_006241. DR Gramene; EOX97142; EOX97142; TCM_006241. DR OMA; WLAFANK; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 14220 MW; ED8798CDE768AB37 CRC64; MAIVLKNLKK TDIEKRLTIP SKALRSFPPL SDKHMVDFAV RDEESGRVWK FRIYTRKKNN NKYLKPVLTK GWREFVCSKQ LRIGDRVAFY KQAGAVKYRV KVERPLKIFG ASVFPSQESV VC // ID A0A061DXS7_THECC Unreviewed; 184 AA. AC A0A061DXS7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97172.1}; GN ORFNames=TCM_006262 {ECO:0000313|EMBL:EOX97172.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97172.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97172.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97172.1; -; Genomic_DNA. DR EnsemblPlants; EOX97172; EOX97172; TCM_006262. DR Gramene; EOX97172; EOX97172; TCM_006262. DR OMA; GILIWIW; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 135 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 184 AA; 21448 MW; F9EEF68785127519 CRC64; MELFTKRLTQ TDINKRLAIP TNSLVYFPGF RGNHSVELKV KDKSHRLWRF RCSIRKKRYL KPVFSSGWPE FTFSNSLRIG DKVSFRLEQG HVTGVEYGIE VQRKIRLLGK DVWADGFSGI LIWIWMFFFL SVFTGLLGRV CYVPEDFFLL LSIISSNPFC SNLPFTEAAS QRLRDHISLF SLLI // ID A0A061DXT2_THECC Unreviewed; 101 AA. AC A0A061DXT2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97177.1}; GN ORFNames=TCM_006269 {ECO:0000313|EMBL:EOX97177.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97177.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97177.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97177.1; -; Genomic_DNA. DR EnsemblPlants; EOX97177; EOX97177; TCM_006269. DR Gramene; EOX97177; EOX97177; TCM_006269. DR OMA; SIERNDR; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 101 AA; 11391 MW; 93FC0B75C9EF06E8 CRC64; MAILEKTVDG DDINQLTITK KFDAEPFPSA AGGGKMTVKD EQGSLWTFKY KVKSRNKRVL SGHWVHFVRN NCVRVGDRVA ISNNDGWSSE AEYKIEVIRG F // ID A0A061DXT4_THECC Unreviewed; 103 AA. AC A0A061DXT4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97182.1}; GN ORFNames=TCM_006276 {ECO:0000313|EMBL:EOX97182.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97182.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97182.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97182.1; -; Genomic_DNA. DR EnsemblPlants; EOX97182; EOX97182; TCM_006276. DR Gramene; EOX97182; EOX97182; TCM_006276. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 103 AA; 11682 MW; 024525355AD5FD20 CRC64; MAIVSKMIDE GDKKQLTITE NFDGEPFPFA AHGGKMRVRD EQGTLWRFTY KVKLTNERVL SGPWEQFLEN NSVRVGDTVA IDNNDRWSSG AAEYKIEVIS RGS // ID A0A061DYA2_THECC Unreviewed; 119 AA. AC A0A061DYA2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX97066.1}; GN ORFNames=TCM_006172 {ECO:0000313|EMBL:EOX97066.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97066.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97066.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97066.1; -; Genomic_DNA. DR EnsemblPlants; EOX97066; EOX97066; TCM_006172. DR Gramene; EOX97066; EOX97066; TCM_006172. DR OMA; FYSAEEQ; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13837 MW; 3F14D5465779B6CA CRC64; MAIFLKNLKK TDLEKRLTIP SKSLHHFPPL SNKHMVDFAV KDEESGHVWK FRIYTRKKSN NNFLKPVLTK GWREFVCSKQ LRVGDRVAFY SAEEQAGAVK YRVKVQRPLK IFGASVFPS // ID A0A061DYQ7_THECC Unreviewed; 117 AA. AC A0A061DYQ7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97171.1}; GN ORFNames=TCM_006259 {ECO:0000313|EMBL:EOX97171.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97171.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97171.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97171.1; -; Genomic_DNA. DR EnsemblPlants; EOX97171; EOX97171; TCM_006259. DR Gramene; EOX97171; EOX97171; TCM_006259. DR OMA; EQGSHEF; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13771 MW; 21F205A35B0977AF CRC64; MELFIKRLTQ TDIDKRLAIP TNSLVYFPGF RGNHSVELKV KDKSHRLWTF RCSIRKKRYL KPVFSSGWLE FIRNNNLRIG DKVSVRLEQG HLSGVEYGIE VQRKIRLLGK DVWADVL // ID A0A061DYR3_THECC Unreviewed; 101 AA. AC A0A061DYR3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97181.1}; GN ORFNames=TCM_006275 {ECO:0000313|EMBL:EOX97181.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97181.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97181.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97181.1; -; Genomic_DNA. DR EnsemblPlants; EOX97181; EOX97181; TCM_006275. DR Gramene; EOX97181; EOX97181; TCM_006275. DR OMA; XIDERRR; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 101 AA; 11505 MW; 67402A3DC69AD6AD CRC64; MAIFEKTIDG DDINQLTITD RFNAEPFPSA ASGGAMTVKD EQGLLWTFKY KVKSRNKRVL SGHWVHFVRN NRVRVGDRVA ISNNDGWSSE AEYKIEVLRG F // ID A0A061DZC4_THECC Unreviewed; 196 AA. AC A0A061DZC4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98119.1}; GN ORFNames=TCM_006953 {ECO:0000313|EMBL:EOX98119.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98119.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98119.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98119.1; -; Genomic_DNA. DR EnsemblPlants; EOX98119; EOX98119; TCM_006953. DR Gramene; EOX98119; EOX98119; TCM_006953. DR OMA; MESAIHV; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 196 AA; 22530 MW; 615B4684E3E97291 CRC64; MESAIHVAFN VPEKKKNLHV PNLQDSGLFK DRTISKNFAS ISTNPLFYTQ LLSLDSRCQS ATMLVKKELT KTDVGVRLSF PMKSLKAFEF PRGKDKVEFE AIDSTGKSWI FGLSRRNSHR HSHPKPVLSS GWRAYVQAKG LKQNDRVIIH YEERDKAMKT RFKIRAQRKS PKTLKLFGKE VEIWDDLENL QPEVAA // ID A0A061DZD6_THECC Unreviewed; 126 AA. AC A0A061DZD6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 12-APR-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98129.1}; GN ORFNames=TCM_006964 {ECO:0000313|EMBL:EOX98129.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98129.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98129.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98129.1; -; Genomic_DNA. DR EnsemblPlants; EOX98129; EOX98129; TCM_006964. DR Gramene; EOX98129; EOX98129; TCM_006964. DR OMA; DIWIEVE; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 90 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 126 AA; 14806 MW; 8E6B66404EE483C8 CRC64; MKLFSKLLTQ TDIEKRLSVP THILHLFPFL DGDRFADLQV KDSSGGLWTF RCIYRDGIYA KPVFSKGWLE FVYAKNLQID DEVAFHKDKD IEAAVPYRIE VKRKLMRLMG QDIWIEVEQL HLYGLS // ID A0A061DZE2_THECC Unreviewed; 416 AA. AC A0A061DZE2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Sulfotransferase, putative isoform 1 {ECO:0000313|EMBL:EOX98134.1}; GN ORFNames=TCM_006968 {ECO:0000313|EMBL:EOX98134.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98134.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98134.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98133.1; -; Genomic_DNA. DR EMBL; CM001880; EOX98134.1; -; Genomic_DNA. DR EnsemblPlants; EOX98133; EOX98133; TCM_006968. DR EnsemblPlants; EOX98134; EOX98134; TCM_006968. DR Gramene; EOX98133; EOX98133; TCM_006968. DR Gramene; EOX98134; EOX98134; TCM_006968. DR OMA; TEFVWEN; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transferase {ECO:0000313|EMBL:EOX98134.1}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 312 407 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 312 407 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 416 AA; 47954 MW; 71011675B0638455 CRC64; MSQPVGPALP EKKPCIFYKL IVSSILQDKK LRIPHKFVKK YGDELSSIVT LATPSGRFWL VELKKDKRRM WFDSGWNVFV EYYSISVGYF LVFRYEGNSH FNVHVYNLAA SEINYLSNGL NNSEELSRDE HVKNIEDGDL AEIMGSCPKC SSSYFLTDKD SDECLDRDRK KYKNSTSGAD LKNLHQKNDM HDLQATFQLT QGKGFQLNVV ELTSTADEGG PYFLNETQQI TKKIKQETEP SKLHELKNFL YRVFLIDFTH PNSLKDIDEH EEELPAMNTP RNIARRWRDV TTEDKQSALH AAATFKPDNP FCRIILRPSY VYKGILLHIP RWFARKHLNG VNGTITLQVS EGKKWPVRCI YVDGHLKFCK GWAEFVLDNN LDEGDVCVFE LINTEEIVLK VTIFRVLEDA GPVKKL // ID A0A061DZE9_THECC Unreviewed; 465 AA. AC A0A061DZE9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98139.1}; GN ORFNames=TCM_006970 {ECO:0000313|EMBL:EOX98139.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98139.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98139.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98139.1; -; Genomic_DNA. DR EnsemblPlants; EOX98139; EOX98139; TCM_006970. DR Gramene; EOX98139; EOX98139; TCM_006970. DR OMA; FHELEDN; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 367 463 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 367 463 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 465 AA; 53889 MW; 32A5AEA9262A4D92 CRC64; MHVIQDIFFE GLNKLMAHRT RKRPRSNHVV EEESLHFFKI ILPHTIAEKK LKIPKKFVGK FGHELSSLAT FVLPNGRKWK IGLTKADDRI WLDDGWHEFV EYNSIRYGYF LIFRYERNST FHVIIFDNSA CEVDYPSYVP SNDEELNDGE SEKHSIHQDS ETEEDDSPEF LGVKAPNLDE RTNREAIISG KQAASSQQRL VRKPQGDAAS HKNAEVKQAK VTGVRRCKTE EVEFDHLNES RQINSNIKEL RRSHRLLPSK SHLMNQNATG IHDQDLSVQL RDLKQQFDGK KLKITIQRAN LQSLEVMHKG NEANKKTESG KQGQHGSIQD EETEIYVSRM FFGISSTSRD RERAIRAVEV IKPMNPCFMI ILRRCHFNSS TMPVPAGFAA EYLSGVTDHI RVEDSDGREW FIELRRQNNC TLILRKGCHR FWRDNNLKEG DVCFFELRDK KAAVHKISIF RADSN // ID A0A061DZI0_THECC Unreviewed; 116 AA. AC A0A061DZI0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98120.1}; GN ORFNames=TCM_006954 {ECO:0000313|EMBL:EOX98120.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98120.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98120.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98120.1; -; Genomic_DNA. DR EnsemblPlants; EOX98120; EOX98120; TCM_006954. DR Gramene; EOX98120; EOX98120; TCM_006954. DR OMA; DAFRIPE; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 116 AA; 13718 MW; D3F1F599C2B9CBE8 CRC64; MELCSKILKR TDVEVRLSFP TATMRKHFRL DQEGGKSVDF KVTDKYAKVW PFRLYTRNNG HPKPVLTKGW INFVKKNKLR VGDKVIFFVH ENGDQLGIRV QRNIKLLGQE HWAEYM // ID A0A061DZJ0_THECC Unreviewed; 117 AA. AC A0A061DZJ0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98130.1}; GN ORFNames=TCM_006965 {ECO:0000313|EMBL:EOX98130.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98130.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98130.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98130.1; -; Genomic_DNA. DR EnsemblPlants; EOX98130; EOX98130; TCM_006965. DR Gramene; EOX98130; EOX98130; TCM_006965. DR OMA; DENGSTW; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13376 MW; 0939473C8DA80067 CRC64; MKLFSKLLSQ TDIRKRLSIP MKSFQSFPRF KAAHALDLQV KDESGVLWQF RLCIRKKNYL KPVFSTGWGK FVQSKNLQVG DKVKLYKEAD QASGAQFKIK AKKAVKIFGV VFGYAKA // ID A0A061DZJ5_THECC Unreviewed; 283 AA. AC A0A061DZJ5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein isoform 3 {ECO:0000313|EMBL:EOX98135.1}; GN ORFNames=TCM_006968 {ECO:0000313|EMBL:EOX98135.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98135.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98135.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98135.1; -; Genomic_DNA. DR EMBL; CM001880; EOX98136.1; -; Genomic_DNA. DR EnsemblPlants; EOX98135; EOX98135; TCM_006968. DR EnsemblPlants; EOX98136; EOX98136; TCM_006968. DR Gramene; EOX98135; EOX98135; TCM_006968. DR Gramene; EOX98136; EOX98136; TCM_006968. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32461 MW; 83F26B48155AA228 CRC64; MSQPVGPALP EKKPCIFYKL IVSSILQDKK LRIPHKFVKK YGDELSSIVT LATPSGRFWL VELKKDKRRM WFDSGWNVFV EYYSISVGYF LVFRYEGNSH FNVHVYNLAA SEINYLSNGL NNSEELSRDE HVKNIEDGDL AEIMGSCPKC SSSYFLTDKD SDECLDRDRK KYKNSTSGAD LKNLHQKNDM HDLQATFQLT QGKGFQLNVV ELTSTADEGG PYFLNETQQI TKKIKQERWA EFVLDNNLDE GDVCVFELIN TEEIVLKVTI FRVLEDAGPV KKL // ID A0A061DZK1_THECC Unreviewed; 305 AA. AC A0A061DZK1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=DNA binding protein, putative isoform 1 {ECO:0000313|EMBL:EOX98140.1}; GN ORFNames=TCM_006971 {ECO:0000313|EMBL:EOX98140.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98140.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98140.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98140.1; -; Genomic_DNA. DR RefSeq; XP_007042309.1; XM_007042247.2. DR EnsemblPlants; EOX98140; EOX98140; TCM_006971. DR GeneID; 18607858; -. DR Gramene; EOX98140; EOX98140; TCM_006971. DR KEGG; tcc:18607858; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 35303 MW; AC01B4A1D83CF357 CRC64; MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKADNKVW FQEGWQEFVE RYYIRVGYFL IFRYEGNSAF SNLFGGTKLN NCINWTGEVN LHTSKGVNNQ PIRVKLHSSG AELPKPKKPG RKKRKFDPNE QDSSVGHEDE VEMRFRFYES ASARKRTVTA EERERAINAA KAFEPTNPFC RVVLRPSYLY RGCIMYLPSC FAEKHLSGVS GFIKLQLPDG KQWPVRCLYR GGRAKFSQGW YEFTLENNLG EGDVCVFELL RSREFVLKVT VFRVLESTGL MNRPQ // ID A0A061DZK9_THECC Unreviewed; 474 AA. AC A0A061DZK9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98145.1}; GN ORFNames=TCM_006973 {ECO:0000313|EMBL:EOX98145.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98145.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98145.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98145.1; -; Genomic_DNA. DR EnsemblPlants; EOX98145; EOX98145; TCM_006973. DR Gramene; EOX98145; EOX98145; TCM_006973. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 192 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 463 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 192 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 370 463 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 474 AA; 54387 MW; 73B82BC4C45B9003 CRC64; MCFDVQIFEK SGCERNCVSI TRMHQDSTEK IKEEEMDVTD TVKTKSQVQI GGKAKKKSAE EKDLASSSRK RPAGRKITAK LCKAAKNFTS NFPHFKHCIT RCNVEVPFQL TIPTSSSTQN RIHLLDFERE ILGGLTLPSL LRMTFNLYDL ELLTSNCGTK KMQSHLESKK KMVKKSSKGV ESNLPDHDNR PSFSMFILHK GDASRSLEIP PHFVRTHLPK RIPTRAVLRG PSGDYWKITM CKQDRSTIMQ HGWQQFYQNH CLGDKDFLVL RYNGNMCFDV QIFEKSGCER NCVSITRTHQ DSTEKIKEEE MDLTDMVKTK SQVQIGGKAK KKSAEEKDLA SSSRKRPAGR KITAKLCKAA KDFTSNFPHF KHCITRCNVD IPFLLTIPTS FLNAHLPQAR TEFTFWTSKE KSWEVTLLYT DTNKVFSKGW RRFAVDNKLE MDDSCVFELV APREMRVHIF PTERGNCSQL FVQV // ID A0A061DZV9_THECC Unreviewed; 408 AA. AC A0A061DZV9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative isoform 1 {ECO:0000313|EMBL:EOX98225.1}; GN ORFNames=TCM_007036 {ECO:0000313|EMBL:EOX98225.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98225.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98225.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98224.1; -; Genomic_DNA. DR EMBL; CM001880; EOX98225.1; -; Genomic_DNA. DR EnsemblPlants; EOX98224; EOX98224; TCM_007036. DR EnsemblPlants; EOX98225; EOX98225; TCM_007036. DR Gramene; EOX98224; EOX98224; TCM_007036. DR Gramene; EOX98225; EOX98225; TCM_007036. DR OMA; LPMPFCK; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 358 406 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 408 AA; 46344 MW; 385D4130F9D53A9A CRC64; MGTKIEEPQI SETSLDPDNV NRQPSVMERV EELQANLAAG FPSCMKTMVR SNVRHGFWLH LPMPFCKLHM PKHDATVILE DESGEEYKTT YIAERTALSA GWKAFSAGHK LVEGDVLVFH LVSSSKFKVY IVKAFKSNKL DGRFGSLNVN VDAKPIRSVR MKRRKRTSKR AKCLELLPLN HAQDNVDNNS LMVLDTKNER LVDQSDNDSK DLSSGLFDGI RSLASIIDFN EVKSIDSFVI TVNGSRIDSE LSEYHKTKYY ELCCSQNSFL HDHLLKSISS KLAAEIITQT VNIAEAVKGC KLSSFQADYS LWDKTLKGFE LLGMNVGFLR ARLNRLKTLA LELQEAVESE RHRVSLEQDH MKEEKKSLEM KLVKLKEAMH RLDAEIENLK ANAEKHELIF QEEVNAAW // ID A0A061E0G1_THECC Unreviewed; 115 AA. AC A0A061E0G1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98117.1}; GN ORFNames=TCM_006951 {ECO:0000313|EMBL:EOX98117.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98117.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98117.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98117.1; -; Genomic_DNA. DR EnsemblPlants; EOX98117; EOX98117; TCM_006951. DR Gramene; EOX98117; EOX98117; TCM_006951. DR OMA; FACTIRS; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 115 AA; 12934 MW; C4AEA22779A4E3E7 CRC64; MAVFTKVLTN TDVQRRFSFP DGCLPALPPF RGCHAIVLQV KDEAGILWNF ACTIRSGMTP TPVIVSGWIQ FVRSKELQIG DVVFFYREDD TVTGAHYKIE VKKNSTLTSV NRKVL // ID A0A061E0I2_THECC Unreviewed; 444 AA. AC A0A061E0I2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98132.1}; GN ORFNames=TCM_006967 {ECO:0000313|EMBL:EOX98132.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98132.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98132.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98132.1; -; Genomic_DNA. DR EnsemblPlants; EOX98132; EOX98132; TCM_006967. DR Gramene; EOX98132; EOX98132; TCM_006967. DR OMA; NREAING; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 346 442 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 346 442 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 444 AA; 51497 MW; 48271D3566874AEE CRC64; MAHRTRKRPR SNHVVDESLH FFKIILPRTI AEKNLTIPNK FVGKFGHELS GVATFVLPNG RKWKIGLTKA DDRIWLDDGW HEFIEYNSIR YGYFLVFRYE KDSTFHVIIF DNSACEVDYP SNDEELTDGE SEKHSIHQDS ETEEDDSPEV LGVKAPSLNE RANREAINGN QDASSQQHLV RKPQVDAASH KNSEVKQDKV TRVKRCKTEE VEFDNLNESR QINSNIKELR RSHRLLPSKS HLMNQNATGI HDQDLSVQLQ DLKQQFDGKK LKITIQRANL QSLEVMHKGN EANKETESGK QDQHGSIQDE EIEIYVSRMF FGISSTSRDR ERAIRAVEVI KPKNPCFMII LRRGNFDSST MHVPAGFDTE YLSGVTDHIR VEDSDGREWF IEFKRHRNFG ILLRKGCYRF WRDNNLKEGD VCIFELRDKK AAVHKISIFR ADSN // ID A0A061E0I7_THECC Unreviewed; 277 AA. AC A0A061E0I7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Sulfotransferase-like protein isoform 5 {ECO:0000313|EMBL:EOX98137.1}; DE Flags: Fragment; GN ORFNames=TCM_006968 {ECO:0000313|EMBL:EOX98137.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98137.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98137.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98137.1; -; Genomic_DNA. DR EnsemblPlants; EOX98137; EOX98137; TCM_006968. DR Gramene; EOX98137; EOX98137; TCM_006968. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transferase {ECO:0000313|EMBL:EOX98137.1}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 277 277 {ECO:0000313|EMBL:EOX98137.1}. SQ SEQUENCE 277 AA; 31967 MW; BC5BD5CF97A499F7 CRC64; MSQPVGPALP EKKPCIFYKL IVSSILQDKK LRIPHKFVKK YGDELSSIVT LATPSGRFWL VELKKDKRRM WFDSGWNVFV EYYSISVGYF LVFRYEGNSH FNVHVYNLAA SEINYLSNGL NNSEELSRDE HVKNIEDGDL AEIMGSCPKC SSSYFLTDKD SDECLDRDRK KYKNSTSGAD LKNLHQKNDM HDLQATFQLT QGKGFQLNVV ELTSTADEGG PYFLNETQQI TKKIKQETEP SKLHELKNFL YRVFLIDFTH PNSLKDIDEH EEELPAM // ID A0A061E0J5_THECC Unreviewed; 344 AA. AC A0A061E0J5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=DNA binding protein, putative isoform 3 {ECO:0000313|EMBL:EOX98142.1}; GN ORFNames=TCM_006971 {ECO:0000313|EMBL:EOX98142.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98142.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98142.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98142.1; -; Genomic_DNA. DR RefSeq; XP_007042311.1; XM_007042249.2. DR EnsemblPlants; EOX98142; EOX98142; TCM_006971. DR GeneID; 18607858; -. DR Gramene; EOX98142; EOX98142; TCM_006971. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 39791 MW; 4C6393CEB2C1E3B0 CRC64; MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKADNKVW FQEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFNLINS EINYQSNPLI GSQYNHGKQY PFEELEDDEC ISPALQNLFG GTKLNNCINW TGEVNLHTSK GVNNQPIRGA ELPKPKKPGR KKRKFDPNEQ DSSVGHEDEV EMRFRFYESA SARKRTVTAE ERERAINAAK AFEPTNPFCR VVLRPSYLYR GCIMYLPSCF AEKHLSGVSG FIKLQLPDGK QWPVRCLYRG GRAKFSQGWY EFTLENNLGE GDVCVFELLR SREFVLKVTV FRVLESTGLM NRPQ // ID A0A061E0T9_THECC Unreviewed; 421 AA. AC A0A061E0T9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein isoform 1 {ECO:0000313|EMBL:EOX98222.1}; GN ORFNames=TCM_007035 {ECO:0000313|EMBL:EOX98222.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98222.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98222.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98222.1; -; Genomic_DNA. DR EnsemblPlants; EOX98222; EOX98222; TCM_007035. DR Gramene; EOX98222; EOX98222; TCM_007035. DR OMA; DINQYEV; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 421 AA; 47320 MW; 8C0917F51388B2B7 CRC64; MMMHMKMKVK VEEEEPTQMQ QEPLVDEDEE DHLPISQLFQ LLKQRQHQSL LSSSSSSSSS SMSMEIHDYP QKAARKRPRA KHSNDHVIKA LPAVKVKAEE AWANSSVNKR AEEVQANLPA EFPSFFKIMI PSMVCGCFWM ALPKEFCQLH LPSHNTTVVL VDEGGKEYKT NFLVQRRALS GGWRKFSQEH GLLVGDALVF HLIRPSKFKV YILRVNGLGE VDAALGLLRL ETSAKQTCIN HAGKNNAEPF AQDINQYEVH RNSLSYPSAE ENQSDNGSFG IGSSEVEGIR SSPEANAEFE QSRDAIGASK ISPPQADFVA WDNTLAGFEL LGMNVGVLRN RASRLLDPAF ESKTQVKSRR FKEAEPERAY VEQEARSLKL QLLEKREEMG RLDADIEALK VNARRHKLMF EAVVNAPCMG I // ID A0A061E0U4_THECC Unreviewed; 258 AA. AC A0A061E0U4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX98227.1}; GN ORFNames=TCM_007039 {ECO:0000313|EMBL:EOX98227.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98227.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98227.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98227.1; -; Genomic_DNA. DR EnsemblPlants; EOX98227; EOX98227; TCM_007039. DR Gramene; EOX98227; EOX98227; TCM_007039. DR OMA; HLPKHDE; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 258 AA; 29938 MW; 0B1348B28743EBE5 CRC64; MVAPKATYEQ MRKRRLEENK KRMEELNLKN LSQALKNTSP KPSPMKQMKP RTPRQRVDLT AVRRSSRVAD KPKPNYKDIP LEPLERPRRS HSRRNLWDRV YASDEERAYA IERAEQLEST LESDYPSFVK PMLQSHVTGG FWLGLPVQFC KKHLPDEDKM ITLVDEKGEE FPTKYLAEKT GLSGGWRGFS VDHNLVDGDA LVFQLVTPTE FKVYIIRAYE SEDNEDGEPG EDDKEPEPDV KPDVQVLDRS AKRIRARK // ID A0A061E1C2_THECC Unreviewed; 93 AA. AC A0A061E1C2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98121.1}; GN ORFNames=TCM_006955 {ECO:0000313|EMBL:EOX98121.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98121.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98121.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98121.1; -; Genomic_DNA. DR EnsemblPlants; EOX98121; EOX98121; TCM_006955. DR Gramene; EOX98121; EOX98121; TCM_006955. DR OMA; REHDHEN; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 93 AA; 11129 MW; 780966181470375A CRC64; MRKHFRLDQE GGKSVDFKVT DKYGKVWPFR LYTRNNGHPK PVLTKGWINF VKKKKLRVGD KVIFFVHENG DQLGIRVQRS IKLLDQEHWA EYM // ID A0A061E1C8_THECC Unreviewed; 122 AA. AC A0A061E1C8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98126.1}; GN ORFNames=TCM_006961 {ECO:0000313|EMBL:EOX98126.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98126.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98126.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98126.1; -; Genomic_DNA. DR EnsemblPlants; EOX98126; EOX98126; TCM_006961. DR Gramene; EOX98126; EOX98126; TCM_006961. DR OMA; QFRIEVK; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 99 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 122 AA; 13878 MW; 0B3A4F1DDA4A03BC CRC64; MTLFSKPLTK SDVEKSLLIP THSFNTLPLE EGQFFNMNVV DSAGNAWTFP CFIQQNNDEI KGPSVISVGW LKFLHNKDVR VGDTVFLYQI SLDDNCTGTQ FRIEVKRKIR LLGQDIWAAV DQ // ID A0A061E1E9_THECC Unreviewed; 350 AA. AC A0A061E1E9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=DNA binding protein, putative isoform 2 {ECO:0000313|EMBL:EOX98141.1}; GN ORFNames=TCM_006971 {ECO:0000313|EMBL:EOX98141.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98141.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98141.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98141.1; -; Genomic_DNA. DR RefSeq; XP_007042310.1; XM_007042248.2. DR EnsemblPlants; EOX98141; EOX98141; TCM_006971. DR GeneID; 18607858; -. DR Gramene; EOX98141; EOX98141; TCM_006971. DR OMA; CILQFDE; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 40443 MW; 7C28B07E535553C3 CRC64; MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKADNKVW FQEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFNLINS EINYQSNPLI GSQYNHGKQY PFEELEDDEC ISPALQNLFG GTKLNNCINW TGEVNLHTSK GVNNQPIRVK LHSSGAELPK PKKPGRKKRK FDPNEQDSSV GHEDEVEMRF RFYESASARK RTVTAEERER AINAAKAFEP TNPFCRVVLR PSYLYRGCIM YLPSCFAEKH LSGVSGFIKL QLPDGKQWPV RCLYRGGRAK FSQGWYEFTL ENNLGEGDVC VFELLRSREF VLKVTVFRVL ESTGLMNRPQ // ID A0A061E1N7_THECC Unreviewed; 465 AA. AC A0A061E1N7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX98226.1}; GN ORFNames=TCM_007038 {ECO:0000313|EMBL:EOX98226.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98226.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98226.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98226.1; -; Genomic_DNA. DR EnsemblPlants; EOX98226; EOX98226; TCM_007038. DR Gramene; EOX98226; EOX98226; TCM_007038. DR OMA; KIATAPW; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 402 448 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 465 AA; 52908 MW; 361AFF86A399FCD3 CRC64; MAVSPKQRIS PVKVKRRRPP KYRFFRNKLS GLDKMTPNQF VSLGKEKAQR HKRKRVDDMY ENDQVKSAVT ERAVEVQTNL SSEFPSLIKY MLPSHVTGGF WLGLPKDFCL KHLPKEDRMI VLEDEEGKEF QAKYLVEKTG LSGGWRGFSI AHKLLEGDVC VFHLIKPSKL KVYIVRREGS DEMNVALGLL KLESSTQPMD LVKEPKICEG TRDESLGNYG VEENRICVET TGKPLEVLPL GIYPKTIHNN DPTLSSTSLG PTPYHSENDS EDLGSEVLDG IRLSESIVDF KEVKSIENFK ILANGLIINS ELAKYVQMKY YELCCSQKSF LHDHLLEGLN YKLVAGVIAE TVNIADAIRA AKLTTSHHNF LTWDQTLKSF EGLGMKVGML RSRLDRLMNL SLKAKRHQEA RLEQVHAKEE ERKLEAKLLE VTEALNRLDR EIGSLEEENA DRLEILFQEK ASAPW // ID A0A061E3W0_THECC Unreviewed; 816 AA. AC A0A061E3W0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_008374 {ECO:0000313|EMBL:EOX99640.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX99640.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX99640.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX99640.1; -; Genomic_DNA. DR EnsemblPlants; EOX99640; EOX99640; TCM_008374. DR Gramene; EOX99640; EOX99640; TCM_008374. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 698 791 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 816 AA; 91171 MW; 40C381A3771A735C CRC64; MDYNDAAMAT HGSAPSVTCK KSIGYGAVDS GDELYRELWH ACAGPLATVP RQGDLVFYFL QGHIEQVEAS RNQVSDQQTP AYDLPPKILC RVVNVQFKAE SDTDEVFAQV SLLPLPKQDE NSVEKEGELP PAQRARVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSKQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSSKKLVA GDAFIFLRGE TGELRVGVRR AMRQASNVSS SVISSQSMHI GVLATAWHAV STGTMFTVYY KPRTSPAEFI VPFHKYMESI KNNYSIGLRF KMRFEGEEAP EQRFSGSVIG YEDADPIRWP GSKWRCLKVH WDETSPFHRP DRVSPWKVEP ALPPAVDVLP NSRLKRSHAN VASSPSDSLV LTREGSSKTT MDSSLDNGFR RTLQGQKSLS QRDTLAESKY PSEGQDQTEM GFGKQRLAPQ DTLPQVIHGE KSTSPTPVSW TLQKLYKFGQ PSVEQNSSNI DQLKTDIFDK GHLFELPGCP QTMMHSSASV NLLGAEEKKL NYQDYFPVRP GAVEGYNRPH GSDFQQQPGK WLLPLLPITH SGKLPPVDIL NSQPLSSQLK DNVKSEGDGI CKLFGISLVS NTMPTELSVP HTKSIPKPLR QIASDHPQDS GCDLMLEQSK CSKFDEIALG DDEEGKPVHT SEELPGDILR KFQGGSARTC IKVHKQGIAV GRSVDLTKFN GYDELIAELD RTFEFDGELI SPNKKWLVVF TDDEDDMMLV GDDPWKEFCT MVRRIFIYTG EEIKRMDARP FNPKVEENSP GKDQKTNLMH RASVSG // ID A0A061E4G0_THECC Unreviewed; 264 AA. AC A0A061E4G0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97143.1}; GN ORFNames=TCM_006242 {ECO:0000313|EMBL:EOX97143.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97143.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97143.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97143.1; -; Genomic_DNA. DR EnsemblPlants; EOX97143; EOX97143; TCM_006242. DR Gramene; EOX97143; EOX97143; TCM_006242. DR OMA; HSTDQAM; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 106 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 264 AA; 29849 MW; 38FB94771051D119 CRC64; MAVLSKVLTK TDVQKRLSVR TVNKKCFLDF GNKHKVEFKV EDKNGDVWPF VCSTRKGQDY PKPVLSKGWL RFVRRWKLAI GDRVVLHEIQ GKAGTGLYRI EVIKRAKQSP GVLSPSILNH DGDRSMGNIG KEPTGTTHST DQAMAYNQTD GPRDQTVSTV TSHSTDQAMA YKQTEGLRDQ PVSAVTFHST DQAMAYNQTE RLNDLPVTDR VGSTMVEFIC LKPRVQVKEP KFIDFFELES QDRKGKDMVE SPSTSLTTRF FEFL // ID A0A061E4M6_THECC Unreviewed; 108 AA. AC A0A061E4M6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX97178.1}; GN ORFNames=TCM_006270 {ECO:0000313|EMBL:EOX97178.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97178.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97178.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97178.1; -; Genomic_DNA. DR EnsemblPlants; EOX97178; EOX97178; TCM_006270. DR Gramene; EOX97178; EOX97178; TCM_006270. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 108 AA; 12246 MW; 7FE7B27277FA04DD CRC64; MAIVSKMIVE GDMKQLTITK NFDGEPFPSA AHGGKMRVRD EPGALWTFKY KVKSTNERVL SGHWMQFVQN NSVRVGDTVA IDKNDGWSSE AAEYKVEVIR RVQNRSDQ // ID A0A061E4N0_THECC Unreviewed; 455 AA. AC A0A061E4N0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein isoform 1 {ECO:0000313|EMBL:EOX97183.1}; GN ORFNames=TCM_006281 {ECO:0000313|EMBL:EOX97183.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX97183.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX97183.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX97183.1; -; Genomic_DNA. DR EnsemblPlants; EOX97183; EOX97183; TCM_006281. DR Gramene; EOX97183; EOX97183; TCM_006281. DR OMA; ANTIFRS; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 455 AA; 52939 MW; D610DE6AF6A62BCA CRC64; MSNFEAKNFF KVYLPKLSFE RMSIPPTAVV CSNGLMPMPA TATLRNCKGQ CRHVELNKCD GRMFFEKGWR RFIDDNSIKE EDILVFSYVG CSVFDVKVYG FDGCEKNVSY LVEKGESGEE QGQEDDEEED YGYQEEGEDS VLEMEDDDDD DGYLEEGEDS DLEMKREEEN EEVLDTLTNR RGQRKINKRN SGLHEGLAAV NDEETTSMEV EYEELNPERY VQELNPYFVA RTRLGRGNEL IFLHYFDFLF SNIMFSHAPM PRMLVSLSGM FSTNFWLYSL CGSQYVPSTV IRDYDLILED NQEITFLDPY DRKKIGKVRK WKDRRTCIIG WRSFCNRNRV NQERDVCICE FLLENENEQK PKFMKVHIIR GKHTKSQKST LKHYQKKHSD KTLPGLTLYY SNQVQDASSL TMNSHGRGSN RPTLQSLVSK LPCEKVDIEH RKGHEELSKS NCGLL // ID A0A061E4V9_THECC Unreviewed; 763 AA. AC A0A061E4V9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_008374 {ECO:0000313|EMBL:EOX99642.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX99642.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX99642.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX99642.1; -; Genomic_DNA. DR EnsemblPlants; EOX99642; EOX99642; TCM_008374. DR Gramene; EOX99642; EOX99642; TCM_008374. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 698 763 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 763 AA; 85035 MW; 0E8A83067FACA3A8 CRC64; MDYNDAAMAT HGSAPSVTCK KSIGYGAVDS GDELYRELWH ACAGPLATVP RQGDLVFYFL QGHIEQVEAS RNQVSDQQTP AYDLPPKILC RVVNVQFKAE SDTDEVFAQV SLLPLPKQDE NSVEKEGELP PAQRARVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSKQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSSKKLVA GDAFIFLRGE TGELRVGVRR AMRQASNVSS SVISSQSMHI GVLATAWHAV STGTMFTVYY KPRTSPAEFI VPFHKYMESI KNNYSIGLRF KMRFEGEEAP EQRFSGSVIG YEDADPIRWP GSKWRCLKVH WDETSPFHRP DRVSPWKVEP ALPPAVDVLP NSRLKRSHAN VASSPSDSLV LTREGSSKTT MDSSLDNGFR RTLQGQKSLS QRDTLAESKY PSEGQDQTEM GFGKQRLAPQ DTLPQVIHGE KSTSPTPVSW TLQKLYKFGQ PSVEQNSSNI DQLKTDIFDK GHLFELPGCP QTMMHSSASV NLLGAEEKKL NYQDYFPVRP GAVEGYNRPH GSDFQQQPGK WLLPLLPITH SGKLPPVDIL NSQPLSSQLK DNVKSEGDGI CKLFGISLVS NTMPTELSVP HTKSIPKPLR QIASDHPQDS GCDLMLEQSK CSKFDEIALG DDEEGKPVHT SEELPGDILR KFQGGSARTC IKVHKQGIAV GRSVDLTKFN GYDELIAELD RTFEFDGELI SPNKKWLVVF TDDEDDHGRS IRK // ID A0A061E5N3_THECC Unreviewed; 817 AA. AC A0A061E5N3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_008374 {ECO:0000313|EMBL:EOX99641.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX99641.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX99641.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX99641.1; -; Genomic_DNA. DR EnsemblPlants; EOX99641; EOX99641; TCM_008374. DR Gramene; EOX99641; EOX99641; TCM_008374. DR OMA; QQMPAYD; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 698 792 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 817 AA; 91270 MW; B3B58DA848FDB30C CRC64; MDYNDAAMAT HGSAPSVTCK KSIGYGAVDS GDELYRELWH ACAGPLATVP RQGDLVFYFL QGHIEQVEAS RNQVSDQQTP AYDLPPKILC RVVNVQFKAE SDTDEVFAQV SLLPLPKQDE NSVEKEGELP PAQRARVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSKQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSSKKLVA GDAFIFLRGE TGELRVGVRR AMRQASNVSS SVISSQSMHI GVLATAWHAV STGTMFTVYY KPRTSPAEFI VPFHKYMESI KNNYSIGLRF KMRFEGEEAP EQRFSGSVIG YEDADPIRWP GSKWRCLKVH WDETSPFHRP DRVSPWKVEP ALPPAVDVLP NSRLKRSHAN VASSPSDSLV LTREGSSKTT MDSSLDNGFR RTLQGQKSLS QRDTLAESKY PSEGQDQTEM GFGKQRLAPQ DTLPQVIHGE KSTSPTPVSW TLQKLYKFGQ PSVEQNSSNI DQLKTDIFDK GHLFELPGCP QTMMHSSASV NLLGAEEKKL NYQDYFPVRP GAVEGYNRPH GSDFQQQPGK WLLPLLPITH SGKLPPVDIL NSQPLSSQLK DNVKSEGDGI CKLFGISLVS NTMPTELSVP HTKSIPKPLR QIASDHPQDS GCDLMLEQSK CSKFDEIALG DDEEGKPVHT SEELPGDILR KFQGGSARTC IKVVHKQGIA VGRSVDLTKF NGYDELIAEL DRTFEFDGEL ISPNKKWLVV FTDDEDDMML VGDDPWKEFC TMVRRIFIYT GEEIKRMDAR PFNPKVEENS PGKDQKTNLM HRASVSG // ID A0A061E774_THECC Unreviewed; 133 AA. AC A0A061E774; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98118.1}; GN ORFNames=TCM_006952 {ECO:0000313|EMBL:EOX98118.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98118.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98118.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98118.1; -; Genomic_DNA. DR EnsemblPlants; EOX98118; EOX98118; TCM_006952. DR Gramene; EOX98118; EOX98118; TCM_006952. DR OMA; MPENTIK; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 105 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 133 AA; 14833 MW; 0DFE4678F0DB965E CRC64; MAIFRKVLTS TDVERRLSFP EHSLADLPPF EGSPAIDFPV MDDEDGSVWT FCCTFRAGVF PRPVIVKGWS QFVRSKELKS GDMVVLYKEE DSGARKLWRG LCPCTIALQA FSSNGRKGNA SVKFNLLADE VIV // ID A0A061E7A5_THECC Unreviewed; 149 AA. AC A0A061E7A5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOX98138.1}; GN ORFNames=TCM_006969 {ECO:0000313|EMBL:EOX98138.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98138.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98138.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98138.1; -; Genomic_DNA. DR EnsemblPlants; EOX98138; EOX98138; TCM_006969. DR Gramene; EOX98138; EOX98138; TCM_006969. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 40 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 45 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 40 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 45 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 149 AA; 17233 MW; F279BDBAF42877FF CRC64; MWFDSGWNVF VEHYSICVGY SLVLRYEGNS HSNVHVHNLA ICVMYFLVFR YNGNSHCNVH HIPRWFARKH LNGVNGTITL QVSEGKKWPV RCIYVDGHLK FCKGWAEFVL DNNLDEGDVC VFELLNTEEI VLKVTIFRVL EDAGSVNQL // ID A0A061E7B2_THECC Unreviewed; 247 AA. AC A0A061E7B2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=DNA binding protein, putative isoform 4 {ECO:0000313|EMBL:EOX98143.1}; DE Flags: Fragment; GN ORFNames=TCM_006971 {ECO:0000313|EMBL:EOX98143.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98143.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98143.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98143.1; -; Genomic_DNA. DR EnsemblPlants; EOX98143; EOX98143; TCM_006971. DR Gramene; EOX98143; EOX98143; TCM_006971. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 46 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 46 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOX98143.1}. SQ SEQUENCE 247 AA; 28680 MW; F7541C0B2A35BCF5 CRC64; KKADNKVWFQ EGWQEFVERY YIRVGYFLIF RYEGNSAFSN LFGGTKLNNC INWTGEVNLH TSKGVNNQPI RGAELPKPKK PGRKKRKFDP NEQDSSVGHE DEVEMRFRFY ESASARKRTV TAEERERAIN AAKAFEPTNP FCRVVLRPSY LYRGCIMYLP SCFAEKHLSG VSGFIKLQLP DGKQWPVRCL YRGGRAKFSQ GWYEFTLENN LGEGDVCVFE LLRSREFVLK VTVFRVLEST GLMNRPQ // ID A0A061E7L1_THECC Unreviewed; 415 AA. AC A0A061E7L1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein isoform 2 {ECO:0000313|EMBL:EOX98223.1}; GN ORFNames=TCM_007035 {ECO:0000313|EMBL:EOX98223.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX98223.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX98223.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX98223.1; -; Genomic_DNA. DR EnsemblPlants; EOX98223; EOX98223; TCM_007035. DR Gramene; EOX98223; EOX98223; TCM_007035. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 415 AA; 46875 MW; 3308EC3A818E0186 CRC64; MMMHMKMKVK VEEEEPTQMQ QEPLVDEDEE DHLPISQLFQ LLKQRQHQSL LSSSSSSSSS SMSKEIHDYP QKAARKRPRA KHSNDHVIKA LPAVKVKAEE AWANSSVNKR AEEVQANLPA EFPSFFKIMI PSMVCGCFWM ALPKEFCQLH LPSHNTTVVL VDEGGKEYKT NFLVQRRALS GGWRKFSQEH GLLVGDALVF HLIRPSKFKV YILRVNGLGE VDAALGLLRL ETSAKQTCIR KNNAEPFAQD INQYEVHRNS LSYPSAEENQ SDNGSFGIGS SEVEGIRSSP EANAEFEQSR DAIGASKISP PQADFVAWDN TLAGFELLGM NVGVLRNRAS RLLDPAFESK TQVKSRRFKE AEPERAYVEQ EARSLKLQLL EKREEMGRLD ADIEALKVNA RRHKLMFEAV VNAPW // ID A0A061EB30_THECC Unreviewed; 358 AA. AC A0A061EB30; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2 domain class transcription factor {ECO:0000313|EMBL:EOY02136.1}; GN ORFNames=TCM_011862 {ECO:0000313|EMBL:EOY02136.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02136.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02136.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOY02136.1; -; Genomic_DNA. DR EnsemblPlants; EOY02136; EOY02136; TCM_011862. DR Gramene; EOY02136; EOY02136; TCM_011862. DR OMA; KQTMINA; -. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 119 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 192 294 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 119 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 192 294 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 39939 MW; 4146610E6313AA68 CRC64; MDGSCIDEST TSGDSISISP SNLSPLPPAT KSPDSLCRVG SGASVIVDSE AGVEAESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAK AYDIAAQRFR GRDAVTNFKH LRETEEDDIE MAFLNSHSKA EIVDMLRKHT YNDELEQSRR SYGFDGNGKR VVRHDGGFGS FGLELKAREQ LFEKAVTPSD VGKLNRLVIP KQHAEKYFPL QSGSASSKGV LLNFEDVTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDIVSFQR STGLEKQLYI DWKTRTGLGS GLENPVGPVQ MVRLFGVNIF KIPGSENVGI VGCIGKRTRE MELLELECSK KQRVIDAL // ID A0A061EBJ1_THECC Unreviewed; 713 AA. AC A0A061EBJ1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_008374 {ECO:0000313|EMBL:EOX99643.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX99643.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOX99643.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001880; EOX99643.1; -; Genomic_DNA. DR EnsemblPlants; EOX99643; EOX99643; TCM_008374. DR Gramene; EOX99643; EOX99643; TCM_008374. DR Proteomes; UP000026915; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 713 AA; 79265 MW; A36B299A1E7802C9 CRC64; MDYNDAAMAT HGSAPSVTCK KSIGYGAVDS GDELYRELWH ACAGPLATVP RQGDLVFYFL QGHIEQVEAS RNQVSDQQTP AYDLPPKILC RVVNVQFKAE SDTDEVFAQV SLLPLPKQDE NSVEKEGELP PAQRARVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSKQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSSKKLVA GDAFIFLRGE TGELRVGVRR AMRQASNVSS SVISSQSMHI GVLATAWHAV STGTMFTVYY KPRTSPAEFI VPFHKYMESI KNNYSIGLRF KMRFEGEEAP EQRFSGSVIG YEDADPIRWP GSKWRCLKVH WDETSPFHRP DRVSPWKVEP ALPPAVDVLP NSRLKRSHAN VASSPSDSLV LTREGSSKTT MDSSLDNGFR RTLQGQKSLS QRDTLAESKY PSEGQDQTEM GFGKQRLAPQ DTLPQVIHGE KSTSPTPVSW TLQKLYKFGQ PSVEQNSSNI DQLKTDIFDK GHLFELPGCP QTMMHSSASV NLLGAEEKKL NYQDYFPVRP GAVEGYNRPH GSDFQQQPGK WLLPLLPITH SGKLPPVDIL NSQPLSSQLK DNVKSEGDGI CKLFGISLVS NTMPTELSVP HTKSIPKPLR QIASDHPQDS GCDLMLEQSK CSKFDEIALG DDEEGKPVHT SEELPGDILR KFQGGSARTC IKVFLIQSID NFG // ID A0A061EBZ4_THECC Unreviewed; 135 AA. AC A0A061EBZ4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY02451.1}; GN ORFNames=TCM_016923 {ECO:0000313|EMBL:EOY02451.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02451.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02451.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY02451.1; -; Genomic_DNA. DR EnsemblPlants; EOY02451; EOY02451; TCM_016923. DR Gramene; EOY02451; EOY02451; TCM_016923. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 135 AA; 15025 MW; 229C5275AAE73AA3 CRC64; MTKGQHKDLE KTKIPIWPGL SLAIPTKSLA FLPHFCGSNA IELLVRDDNG CSWTFVCSLR KTGYAKPVLQ KGWRHFALAK GLTVGDKVTF YQQETDDGIK VFGTVFPRSC YSIEVERAIK PSLSRAGVDH NLAMK // ID A0A061ECQ6_THECC Unreviewed; 145 AA. AC A0A061ECQ6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY02443.1}; GN ORFNames=TCM_016914 {ECO:0000313|EMBL:EOY02443.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02443.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02443.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY02443.1; -; Genomic_DNA. DR EnsemblPlants; EOY02443; EOY02443; TCM_016914. DR Gramene; EOY02443; EOY02443; TCM_016914. DR OMA; PNNDKHR; -. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 145 AA; 16628 MW; 15306B61798A7EC1 CRC64; MASKGKKAFH ESKAKQKQAK KRRVLFSKRV SRTDVLKRLA IPTECLAFLP RFCGGHALEL SVRDENGHCW TFVCSIRKTG AYQKPVLQQG WREFVLAKCL HVGDRVTFYE QESEDGIKIF GSILPRSRYG IEIEKTMRPL TARPC // ID A0A061ECV0_THECC Unreviewed; 69 AA. AC A0A061ECV0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein isoform 1 {ECO:0000313|EMBL:EOY02805.1}; GN ORFNames=TCM_017198 {ECO:0000313|EMBL:EOY02805.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02805.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02805.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY02805.1; -; Genomic_DNA. DR EnsemblPlants; EOY02805; EOY02805; TCM_017198. DR Gramene; EOY02805; EOY02805; TCM_017198. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 68 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 68 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 69 AA; 7662 MW; 1E72A9A367B83660 CRC64; MPGTRMVILQ VAGRSWHVKL KSYPSRSFLT SGWSLFAKEN ALQANDICVF ELINSSNAVL RVYISKCAG // ID A0A061ED07_THECC Unreviewed; 87 AA. AC A0A061ED07; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein isoform 2 {ECO:0000313|EMBL:EOY02806.1}; DE Flags: Fragment; GN ORFNames=TCM_017198 {ECO:0000313|EMBL:EOY02806.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02806.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02806.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY02806.1; -; Genomic_DNA. DR EnsemblPlants; EOY02806; EOY02806; TCM_017198. DR Gramene; EOY02806; EOY02806; TCM_017198. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 86 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 86 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOY02806.1}. SQ SEQUENCE 87 AA; 9797 MW; 5AAD98705D5E63E1 CRC64; KNPNFKVLLL PFGFAKRYMP GTRMVILQVA GRSWHVKLKS YPSRSFLTSG WSLFAKENAL QANDICVFEL INSSNAVLRV YISKCAG // ID A0A061EE41_THECC Unreviewed; 237 AA. AC A0A061EE41; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=AP2/B3-like transcriptional factor family protein isoform 2 {ECO:0000313|EMBL:EOY02918.1}; GN ORFNames=TCM_017321 {ECO:0000313|EMBL:EOY02918.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02918.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02918.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY02918.1; -; Genomic_DNA. DR EnsemblPlants; EOY02918; EOY02918; TCM_017321. DR Gramene; EOY02918; EOY02918; TCM_017321. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26595 MW; C105C90360BC7388 CRC64; MMAAATPSVH EKPEAFALVA GVEGVTVGGD KTHQASGRSG LTRDLIAAVP SFGVNRKKRM ARQRRSSSTI KLLSFTNSSS SSHVPSSTLP ARVIDPKKLR FLFQKELKNS DVSSLRRMIL PKRAAEAHLP VLESKEGILI SMDDLDGLHV WSFKYRFWPN NNSRMYVLEN TGEFVNTHGL QLGDFIMVYQ DSQNQNYVIQ AKKASDQDVY ADIARNAVND LFLHDYEDRI SRKLWLG // ID A0A061EEH2_THECC Unreviewed; 341 AA. AC A0A061EEH2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_018404 {ECO:0000313|EMBL:EOY03395.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY03395.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY03395.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY03395.1; -; Genomic_DNA. DR EnsemblPlants; EOY03395; EOY03395; TCM_018404. DR Gramene; EOY03395; EOY03395; TCM_018404. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 147 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 167 189 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 99 161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38150 MW; 6F51C484D3A51DE6 CRC64; MPVSLSLLKH LQALHSTINV QLKADPETDE VLAQVTLLPE INISQEENDA EMEPPFPPLP EFRVHSFCKT LTTLDASLHG GFSVPMSFAD QCLPQLVHVN LRGLRQPRRH LLTSGWKDFV NSKRLGAGDA FVFLGFAFVL NLMIMMRGEN GELCVGVRRA MKPRSNVSAS ISIFGMYLSV LATTWEALAR RTMFAISYKP SFSIYFFTIC YCEFSGTIVG IEDADPIKWP GSKRRCLKVF RLCEMGWNLY HNSSGKVSPW KIELALTYTI LSPLPMPWPE PNMVPLSPNS SVLTQEGILK SQVYHLGSLR VTIQPSQGSG FSRVSQCHEI STFGDNFAKM N // ID A0A061EET5_THECC Unreviewed; 291 AA. AC A0A061EET5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=AP2/B3-like transcriptional factor family protein isoform 1 {ECO:0000313|EMBL:EOY02917.1}; GN ORFNames=TCM_017321 {ECO:0000313|EMBL:EOY02917.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02917.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02917.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY02917.1; -; Genomic_DNA. DR ProteinModelPortal; A0A061EET5; -. DR EnsemblPlants; EOY02917; EOY02917; TCM_017321. DR Gramene; EOY02917; EOY02917; TCM_017321. DR OMA; IPIRMED; -. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 32518 MW; CD776908D92A246A CRC64; MMAAATPSVH EKPEAFALVA GVEGVTVGGD KTHQASGRSG LTRDLIAAVP SFGVNRKKRM ARQRRSSSTI KLLSFTNSSS SSHVPSSTLP ARVIDPKKLR FLFQKELKNS DVSSLRRMIL PKRAAEAHLP VLESKEGILI SMDDLDGLHV WSFKYRFWPN NNSRMYVLEN TGEFVNTHGL QLGDFIMVYQ DSQNQNYVIQ AKKASDQDVY ADIARNAVND LFLHDYEVSK SSSYYYPTMD DTGMSFIYDT TFSNDSPLDF LGGSMTNYSR IGSLESFGSV ENLSLDEFYQ V // ID A0A061EHV6_THECC Unreviewed; 918 AA. AC A0A061EHV6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=High-level expression of sugar-inducible gene 2, putative isoform 1 {ECO:0000313|EMBL:EOY04456.1}; GN ORFNames=TCM_019701 {ECO:0000313|EMBL:EOY04456.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY04456.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY04456.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY04456.1; -; Genomic_DNA. DR EnsemblPlants; EOY04456; EOY04456; TCM_019701. DR Gramene; EOY04456; EOY04456; TCM_019701. DR OMA; MFHSKDS; -. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 918 AA; 100769 MW; 773EDC670DE6D079 CRC64; MASKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQLIFCDVF HSKDSGWREC TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKSGFNPM IEDVKPNGFS IVKGDAGQLH STSADNQLSG VSIENLKLMQ LTSNAESIGL RQMLQLHNDD ASGSLGQMKQ EEVLPPAREI GSTCMSNINQ VSNGSVQSVK PNICKANIYD SLPQTNLSIS LGGPLGNQNV FPGSVVDEKG KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ATNTAAAQET LPSAIPNGSL SSESFFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH LSSASGDISW HKSDKHEDRT REGLLLPSML APERKRTRNI GSKSKRLLID SQDALELKLT WEEAQDLLRP PPSIKPSVVT IENHDFEEYD EPPVFGKRSI FAVRSNGGQE QWAQCDSCSK WRRLPVDALL PPKWTCADNN WDQSRSSCSA PDELTPREVE NLLRLNKDVP TMSEDFKKRR IVAYHRPTQE HESSGLDALA NAAILGDNVD NLGTTSVATT TKHPRHRPGC SCIVCIQPPS GKGKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAEIA QRNQQAWGSR EEAEVDSTSK HVSSHHDPSE NEARSVNELE SKSQGHNLPP KVVESNKGQI DLNCDPDRED DSQLGSTHVS MMNLLQVASL PLETYLKENG LTSLISEQPA NSASHAPPQI IAEGDAQDNS CFPSATEERE SKDEENGETG SDRVENDP // ID A0A061EIG6_THECC Unreviewed; 875 AA. AC A0A061EIG6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Transcription factor, putative isoform 3 {ECO:0000313|EMBL:EOY04458.1}; GN ORFNames=TCM_019701 {ECO:0000313|EMBL:EOY04458.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY04458.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY04458.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY04458.1; -; Genomic_DNA. DR EnsemblPlants; EOY04458; EOY04458; TCM_019701. DR Gramene; EOY04458; EOY04458; TCM_019701. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 600 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 875 AA; 96268 MW; B79C842420CA78EC CRC64; MASKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQLIFCDVF HSKDSGWREC TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKSGFNPM IEDVKPNGFS IVKGDAGQLH STSADNQLSG VSIENLKLMQ LTSNAESIGL RQMLQLHNDD ASGSLGQMKQ EEVLPPAREI GSTCMSNINQ VSNGSVQSVK PNICKANIYD SLPQTNLSIS LGGPLGNQNV FPGSVVDEKG KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ATNTAAAQSL KGSTDPHLNA LSKHLSSASG DISWHKSDKH EDRTREGLLL PSMLAPERKR TRNIGSKSKR LLIDSQDALE LKLTWEEAQD LLRPPPSIKP SVVTIENHDF EEYDEPPVFG KRSIFAVRSN GGQEQWAQCD SCSKWRRLPV DALLPPKWTC ADNNWDQSRS SCSAPDELTP REVENLLRLN KDFKKRRIVA YHRPTQEHES SGLDALANAA ILGDNVDNLG TTSVATTTKH PRHRPGCSCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRN QQAWGSREEA EVDSTSKHVS SHHDPSENEA RSVNELESKS QGHNLPPKVV ESNKGQIDLN CDPDREDDSQ LGSTHVSMMN LLQVASLPLE TYLKENGLTS LISEQPANSA SHAPPQIIAE GDAQDNSCFP SATEERESKD EENGETGSDR VENDP // ID A0A061EIM1_THECC Unreviewed; 316 AA. AC A0A061EIM1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2 domain class transcription factor, putative {ECO:0000313|EMBL:EOY04252.1}; GN ORFNames=TCM_019508 {ECO:0000313|EMBL:EOY04252.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY04252.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY04252.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY04252.1; -; Genomic_DNA. DR EnsemblPlants; EOY04252; EOY04252; TCM_019508. DR Gramene; EOY04252; EOY04252; TCM_019508. DR OMA; PRENSGV; -. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 91 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 91 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 36132 MW; D83485A484EF3412 CRC64; MATYSSFPAR KFPENSCQSS ERSIEAAGPQ KQPSSKFKGV VSQPNGRWGA QIYEKHQRVW LGTFNEEEEA AKAYDIAALR FRGQNAFTNF KPSIHTTDED DFEQFFLVSH SKEEIVDMIR KHTYTNELEH SKYNYACHDT RKGIKGNGFS SLPGFDPFEG AREYLFEKVA TPSDVGKLNR IVIPKQHADK YFPLQSGIVS KGVLLNFEDN MGQVWRFRYC YWKSSQSYVL TKDWTRFVKE KKLKAGDAVS FWRSVGPNTK LFIGHKAGNV SNLEELPNRV VPRENSGVIR LFGVNILETN MAVVSRKSKT KEKSLE // ID A0A061EJ57_THECC Unreviewed; 911 AA. AC A0A061EJ57; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=High-level expression of sugar-inducible gene 2, putative isoform 2 {ECO:0000313|EMBL:EOY04457.1}; GN ORFNames=TCM_019701 {ECO:0000313|EMBL:EOY04457.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY04457.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY04457.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY04457.1; -; Genomic_DNA. DR EnsemblPlants; EOY04457; EOY04457; TCM_019701. DR Gramene; EOY04457; EOY04457; TCM_019701. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100009 MW; C5AB000FFB232F73 CRC64; MASKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQLIFCDVF HSKDSGWREC TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKSGFNPM IEDVKPNGFS IVKGDAGQLH STSADNQLSG VSIENLKLMQ LTSNAESIGL RQMLQLHNDD ASGSLGQMKQ EEVLPPAREI GSTCMSNINQ VSNGSVQSVK PNICKANIYD SLPQTNLSIS LGGPLGNQNV FPGSVVDEKG KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ATNTAAAQET LPSAIPNGSL SSESFFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH LSSASGDISW HKSDKHEDRT REGLLLPSML APERKRTRNI GSKSKRLLID SQDALELKLT WEEAQDLLRP PPSIKPSVVT IENHDFEEYD EPPVFGKRSI FAVRSNGGQE QWAQCDSCSK WRRLPVDALL PPKWTCADNN WDQSRSSCSA PDELTPREVE NLLRLNKDFK KRRIVAYHRP TQEHESSGLD ALANAAILGD NVDNLGTTSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQQAW GSREEAEVDS TSKHVSSHHD PSENEARSVN ELESKSQGHN LPPKVVESNK GQIDLNCDPD REDDSQLGST HVSMMNLLQV ASLPLETYLK ENGLTSLISE QPANSASHAP PQIIAEGDAQ DNSCFPSATE ERESKDEENG ETGSDRVEND P // ID A0A061EKT7_THECC Unreviewed; 220 AA. AC A0A061EKT7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=AP2/B3-like transcriptional factor family protein isoform 3 {ECO:0000313|EMBL:EOY02919.1}; GN ORFNames=TCM_017321 {ECO:0000313|EMBL:EOY02919.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02919.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY02919.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY02919.1; -; Genomic_DNA. DR EnsemblPlants; EOY02919; EOY02919; TCM_017321. DR Gramene; EOY02919; EOY02919; TCM_017321. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 220 AA; 24536 MW; 6EFA6D8A2ADC05B4 CRC64; MMAAATPSVH EKPEAFALVA GVEGVTVGGD KTHQASGRSG LTRDLIAAVP SFGVNRKKRM ARQRRSSSTI KLLSFTNSSS SSHVPSSTLP ARVIDPKKLR FLFQKELKNS DVSSLRRMIL PKRAAEAHLP VLESKEGILI SMDDLDGLHV WSFKYRFWPN NNSRMYVLEN TGEFVNTHGL QLGDFIMVYQ DSQNQNYVRI GSLESFGSVE NLSLDEFYQV // ID A0A061EL80_THECC Unreviewed; 838 AA. AC A0A061EL80; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_017488 {ECO:0000313|EMBL:EOY03064.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY03064.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY03064.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001882; EOY03064.1; -; Genomic_DNA. DR RefSeq; XP_017975077.1; XM_018119588.1. DR EnsemblPlants; EOY03064; EOY03064; TCM_017488. DR GeneID; 18601215; -. DR Gramene; EOY03064; EOY03064; TCM_017488. DR OMA; CENLPQR; -. DR Proteomes; UP000026915; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 712 796 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 838 AA; 92896 MW; BFB6F72764C68B87 CRC64; MKLSASGLGQ HGHEGENKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKDT FLPMELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDAEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTIFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG SSSLHDNRDD VANGLMWLRG GSGDQGLHSL NFQSFGSFPW MQQRLDLSFP GNDHTLQYQA MLAPGLQNLG SGDPLRQQLQ QSLQYVQQPG SHNLLLHLQQ QQQQQQQRAV SQSVPHNMLQ AQSQILSENL PSVLGQEQVG NQLEEQAQQQ HNMNQSDQLQ QRQPVNVPSS FLKTDFIESA KFSGSVPAAQ NMLGSLCGES SANLLNFSRT GQSILAEQLP QQSWAPKSTH SQVNAFASST SLPPVFHGKD AIIEPEIGSS DAQNSALFGG NNDSYGLLLP TTMPGFATSS SEADVPSIPL GDPSFQNPLF GCMQDSSELQ STGQVDPPTP TRTFVKVYKS GSVGRSLDIS RFSSYHELRE ELAQMFGIEG KLEDPLRSGW QLVFVDREND ILLLGDDPWD AFVNNVWYIK ILSPEDVQKM GEQRVEPFSP TPGQRMNSSG TGARDRVSGL SSVGSLEY // ID A0A061ET58_THECC Unreviewed; 709 AA. AC A0A061ET58; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_022163 {ECO:0000313|EMBL:EOY07838.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY07838.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY07838.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001883; EOY07838.1; -; Genomic_DNA. DR EnsemblPlants; EOY07838; EOY07838; TCM_022163. DR Gramene; EOY07838; EOY07838; TCM_022163. DR OMA; NLDKMAN; -. DR Proteomes; UP000026915; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 616 699 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 78133 MW; 2073DDAE5A1DFFF1 CRC64; MITFMDSKEK LKEMEKCLDS QLWHACAGGM VQMPSVNAKV FYFPQGHAEH ACGPVDFRNC PRIPAYVLCR VASVKFMADP ETDEVFAKIG LIPVSTNDPD FEDDGIGSIH GNETQEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCIGIR RAKRCIGGGP ESSSGWNATG GNCVVPYGGF SAFLREDESK LMRNGSTNGL NSNSNLMGKR KVRPEQVIEA ATLAANGQPF EVVYYPRAST PEFCVKASLV KAALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD PLRWADSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHP DFPLDSQLPM PTFSGNLLGP SSPFGCLPDH TPAGMQGARH AYYGLSLSDL HLKKLQSGLF PAGFPPPDHA ATPNRTSNGG PIIQKPSMSE NVSCVLTMAH STQNCKKTDD AKTPQLVLFG QPILTEQQIS LSCSADTVSP VLTGNSSSEG NVDKMANFSD GSGSALHQQG LPERSSCEGF PWYKDNRQEA ETNLETGHCK VFMEAEDVGR TLDLSFLGSY DELYRKLADM FGIENSETLS HVLYRDVTGA VKHIGDEPFS DFMKTARRLT ILMDSSSDNV GEYKGRNKH // ID A0A061EUN8_THECC Unreviewed; 333 AA. AC A0A061EUN8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOY08368.1}; GN ORFNames=TCM_022729 {ECO:0000313|EMBL:EOY08368.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY08368.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY08368.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001883; EOY08368.1; -; Genomic_DNA. DR RefSeq; XP_007027866.1; XM_007027804.2. DR EnsemblPlants; EOY08368; EOY08368; TCM_022729. DR GeneID; 18598318; -. DR Gramene; EOY08368; EOY08368; TCM_022729. DR KEGG; tcc:18598318; -. DR OMA; LECEADD; -. DR Proteomes; UP000026915; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 37347 MW; F4EBB7C7D27D2095 CRC64; MEPTQNSPSS KLHQPSIPLE NSPWTSHFYP HQSWINSYNN PQDHPLHPSM FFPSNHPSRN FNLNQDEDEE LDDQTSIDNT ENPNQNPHEN PLDHEREPMF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLGG DSGDKGLLLS FEDESGKCWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG DIILFERHRT DGDRLFIGWR RRGAAVAVAA AADGGNAAMG NSGVGGGNEG WGRGLHQGHP YLGHIQGHGA NVPYQPDCLH AGSIAQNQAP AGNPKRLLRL FGVNLECQLD ESEPSTPDSS SVSSQGPTHQ SYNSNYMDIT FSRDINHMRN HRG // ID A0A061F3C8_THECC Unreviewed; 435 AA. AC A0A061F3C8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2/B3 transcription factor family protein, putative isoform 1 {ECO:0000313|EMBL:EOY11418.1}; GN ORFNames=TCM_026600 {ECO:0000313|EMBL:EOY11418.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY11418.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY11418.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001883; EOY11418.1; -; Genomic_DNA. DR EnsemblPlants; EOY11418; EOY11418; TCM_026600. DR Gramene; EOY11418; EOY11418; TCM_026600. DR OMA; FCMINAN; -. DR Proteomes; UP000026915; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 195 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 262 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 195 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 262 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 435 AA; 49561 MW; EC37081A5E50A35B CRC64; MIHPGWTVSF GCSELSFIGR LVKPMFQPFD CKLMLVNVEL KAAVLMVLGR DVTGQTFGVP MEGYELQQQL YIVYFSTSVL AFVLSFNIDM FNFLETMDEE MLSVISSGEG NATSEVSDSI STSHPARKRQ RSGSNGTSSR FKGVIRQKNG QWGAQLYANH TRIWLGTFKS ETDAAMAYDS AAIKFRTGDT HRNFPLTDIT VEEPKFQSNY SAEAVLSMIR DGSYQYKFMD FLKNSFRNGK VEIDLNSVRK YSGKGLSCKQ LFQKELTPSD VGKLNRLVIP KKYAVKFFPP IEGSGSKGSD AELIFYDKFM RLWKFRYCYW NSSQSFVFTR GWNRFLKEKE LKANDVISFY VCESRKEQEV QRFCMIDVNN YGNDDALAEA ANLQVEREVD LQLRLGHCYA FDGGKQVKQE QELMAVDATE DVNTTGFKLF GMQIN // ID A0A061FA90_THECC Unreviewed; 339 AA. AC A0A061FA90; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=AP2 domain-containing transcription factor, putative isoform 2 {ECO:0000313|EMBL:EOY11419.1}; GN ORFNames=TCM_026600 {ECO:0000313|EMBL:EOY11419.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY11419.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY11419.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001883; EOY11419.1; -; Genomic_DNA. DR EnsemblPlants; EOY11419; EOY11419; TCM_026600. DR Gramene; EOY11419; EOY11419; TCM_026600. DR Proteomes; UP000026915; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38683 MW; 7306B599367E8A26 CRC64; MDEEMLSVIS SGEGNATSEV SDSISTSHPA RKRQRSGSNG TSSRFKGVIR QKNGQWGAQL YANHTRIWLG TFKSETDAAM AYDSAAIKFR TGDTHRNFPL TDITVEEPKF QSNYSAEAVL SMIRDGSYQY KFMDFLKNSF RNGKVEIDLN SVRKYSGKGL SCKQLFQKEL TPSDVGKLNR LVIPKKYAVK FFPPIEGSGS KGSDAELIFY DKFMRLWKFR YCYWNSSQSF VFTRGWNRFL KEKELKANDV ISFYVCESRK EQEVQRFCMI DVNNYGNDDA LAEAANLQVE REVDLQLRLG HCYAFDGGKQ VKQEQELMAV DATEDVNTTG FKLFGMQIN // ID A0A061FAT0_THECC Unreviewed; 224 AA. AC A0A061FAT0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY14013.1}; GN ORFNames=TCM_033025 {ECO:0000313|EMBL:EOY14013.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14013.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14013.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001885; EOY14013.1; -; Genomic_DNA. DR EnsemblPlants; EOY14013; EOY14013; TCM_033025. DR Gramene; EOY14013; EOY14013; TCM_033025. DR OMA; FAITWRR; -. DR Proteomes; UP000026915; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 26177 MW; AAADFCE8E78175F4 CRC64; MKKDHKDNKS KSIEEILNEG FLKENDINAA FILASFRSSA PDLEQKRREV LRQLKGKDKQ ETARKRGQMI MLDKYQPPNI PPVATLAHLI GECSRPYSKQ LTETDLKDNQ IRLSLNKNHV GKSFIPLLKE HEDVNKGIQV ITYDPEGKEY PMKFVFWTSK MYVLTTSGWK RFYKDHALKE SDIVTVWMFR HRHTHNLCFA ITWRRSPTAP SVVRIQEKAT SSQY // ID A0A061FB96_THECC Unreviewed; 524 AA. AC A0A061FB96; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative isoform 2 {ECO:0000313|EMBL:EOY14620.1}; DE Flags: Fragment; GN ORFNames=TCM_033935 {ECO:0000313|EMBL:EOY14620.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14620.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14620.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY14620.1; -; Genomic_DNA. DR EnsemblPlants; EOY14620; EOY14620; TCM_033935. DR Gramene; EOY14620; EOY14620; TCM_033935. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 302 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 411 507 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 302 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 411 507 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOY14620.1}. SQ SEQUENCE 524 AA; 58693 MW; 77514759C1376D98 CRC64; KIPVGFNRNL EGRTSGSVLL RGPSGYSWVV ELVRKDDDLL FVEGWADFVR DHSVECGDFL VFRYDGDLVF DVKVFDQSSC EKEAAFHCKC SQGGSEYDRI VGQKRGREDG GVSLDQDCEG LVKRTRESSS EFDRDVADKE HCGYEPILAA KTRRGLASCD ENNEGTILKT SGTEDLNLHG GGCTPMVAEF EEKKVAQSFN SSFPFFVRIM KRFNVSGSYT LNIPYQFAME HLPKCKTEIV LRNLKGACWT VNSVPTTRVH TSHTLCGGWL GFVRSNEIKV GDICIFEFVR KFELRVHILR VGGEDPDRQS GKAVSNVLIN RSDATLPIKF VKKSSKVHSK SMKKVQMCDN KGFKMLDKKK YGNAAKKSAS VALCSLSRSG NEKQAIGGLR MMLALDEEKA AQSFASGFPS FVRIMRKFNV SGSYTLKIPY KFSKAYLPYC KTEVVLRNMQ GKWWTVNSVP DSKGRAVHTF CGGWMAFVRD NDIKMGDICI FELVNKCEMY VHISGSGRKG LDHQHASTEL LTLR // ID A0A061FC70_THECC Unreviewed; 409 AA. AC A0A061FC70; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative isoform 1 {ECO:0000313|EMBL:EOY14621.1}; GN ORFNames=TCM_033936 {ECO:0000313|EMBL:EOY14621.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14621.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14621.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY14621.1; -; Genomic_DNA. DR EnsemblPlants; EOY14621; EOY14621; TCM_033936. DR Gramene; EOY14621; EOY14621; TCM_033936. DR OMA; FWTHFQS; -. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 46729 MW; 5E63970CA990F84B CRC64; MPFTETRSKS KAFISYRTMS RSAVWVCKMG DSCKDCRSWE EEIFWTHFQS IHFSQFLHGD FLQRLEVPEK FAKNMKQKLP ETVTLKGPSG IIWDVGLKAD GDTLFFDCGW KIFVKDHSLV ENDLLIFKYN GMSQFDVLMF DGRSLCEKAA SYFVRKCGHT EYDSGCQTKR KMNETPVEIV HNSSHCGLES SPEKSINNNI DTRPSRQPIT SAATNKKLRI VGSSTRSIPA RKSLRGKDLT TFAAEVKVET GDLEFDHTSM DGDVFSPRHT ARKRRATQVE KANVFLMAQE ALPREGFMVV MKPTHVARRF YMAIPTAWVA KHLSKQNEDV ILRINKQTWK TRFYYHRNRG CGGLSGGWRN FVNDNNLDED DACVFEPADI GNKPMILDVS IFRVLQAPVP LIQVHPASY // ID A0A061FCJ2_THECC Unreviewed; 348 AA. AC A0A061FCJ2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative isoform 3 {ECO:0000313|EMBL:EOY14623.1}; GN ORFNames=TCM_033936 {ECO:0000313|EMBL:EOY14623.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14623.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14623.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY14623.1; -; Genomic_DNA. DR EnsemblPlants; EOY14623; EOY14623; TCM_033936. DR Gramene; EOY14623; EOY14623; TCM_033936. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39405 MW; BAD968DB80DAB818 CRC64; MKLQEVPEKF AKNMKQKLPE TVTLKGPSGI IWDVGLKADG DTLFFDCGWK IFVKDHSLVE NDLLIFKYNG MSQFDVLMFD GRSLCEKAAS YFVRKCGHTE YDSGCQTKRK MNETPVEIVH NSSHCGLESS PEKSINNNID TRPSRQPITS AATNKKLRIV GSSTRSIPAR KSLRGKDLTT FAAEVKVETG DLEFDHTSMD GDVFSPRHTA RKRRATQVEK ANVFLMAQEA LPREGFMVVM KPTHVARRFY MAIPTAWVAK HLSKQNEDVI LRINKQTWKT RFYYHRNRGC GGLSGGWRNF VNDNNLDEDD ACVFEPADIG NKPMILDVSI FRVLQAPVPL IQVHPASY // ID A0A061FCQ7_THECC Unreviewed; 228 AA. AC A0A061FCQ7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOY14512.1}; GN ORFNames=TCM_033870 {ECO:0000313|EMBL:EOY14512.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14512.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14512.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY14512.1; -; Genomic_DNA. DR RefSeq; XP_007017287.1; XM_007017225.2. DR RefSeq; XP_017981234.1; XM_018125745.1. DR RefSeq; XP_017981235.1; XM_018125746.1. DR RefSeq; XP_017981236.1; XM_018125747.1. DR EnsemblPlants; EOY14512; EOY14512; TCM_033870. DR GeneID; 18591228; -. DR Gramene; EOY14512; EOY14512; TCM_033870. DR KEGG; tcc:18591228; -. DR OMA; MPAPVYK; -. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 26058 MW; 7FAF1F5912AB76C6 CRC64; MVVARQELSY EECRRKRVEE NKKRMEALNL PQLSQALRTP SFKPSPRKQV KPRTGEKQLV VVRRSSRVAN KPAPVYHEVL VEKVIIPRRR VSKHRDLSNR VYASDEARAE ALEKAEKLES GLEPDFPTLT KSMLQSHVTG GFWLGLPVHF CKRNLPKRDE VMTLIDEEGQ EYPAIYLARK TGLSGGWKGF AVAHKLVDGD ALVFQLVRPT TFKVYIIRVK GSEQSNKL // ID A0A061FD38_THECC Unreviewed; 381 AA. AC A0A061FD38; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative isoform 2 {ECO:0000313|EMBL:EOY14622.1}; GN ORFNames=TCM_033936 {ECO:0000313|EMBL:EOY14622.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14622.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14622.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY14622.1; -; Genomic_DNA. DR EnsemblPlants; EOY14622; EOY14622; TCM_033936. DR Gramene; EOY14622; EOY14622; TCM_033936. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 367 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 367 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43449 MW; 3D4BBB3368B6824D CRC64; MGDSCKDCRS WEEEIFWTHF QSIHFSQFLH GDFLQRLEVP EKFAKNMKQK LPETVTLKGP SGIIWDVGLK ADGDTLFFDC GWKIFVKDHS LVENDLLIFK YNGMSQFDVL MFDGRSLCEK AASYFVRKCG HTEYDSGCQT KRKMNETPVE IVHNSSHCGL ESSPEKSINN NIDTRPSRQP ITSAATNKKL RIVGSSTRSI PARKSLRGKD LTTFAAEVKV ETGDLEFDHT SMDGDVFSPR HTARKRRATQ VEKANVFLMA QEALPREGFM VVMKPTHVAR RFYMAIPTAW VAKHLSKQNE DVILRINKQT WKTRFYYHRN RGCGGLSGGW RNFVNDNNLD EDDACVFEPA DIGNKPMILD VSIFRVLQAP VPLIQVHPAS Y // ID A0A061FD42_THECC Unreviewed; 951 AA. AC A0A061FD42; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_034194 {ECO:0000313|EMBL:EOY14976.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14976.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14976.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY14976.1; -; Genomic_DNA. DR EnsemblPlants; EOY14976; EOY14976; TCM_034194. DR Gramene; EOY14976; EOY14976; TCM_034194. DR OMA; SSWKLVY; -. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 837 921 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 951 AA; 104611 MW; 3C42F735CEBBD09A CRC64; MGSVVEEKIK PGALVNGGPQ ATLLEEMKLL KEMQDQSGAR KAIHSELWHA CAGPLVSLPQ VGSLVYYFPQ GHSEQVAVST KRMATSQIPN YPNLPSQLMC QVHNVTLHAD RDTDEIYAQM SLQPVNSEKD VFPIPDFGLK SSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK SQLMVGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI PLAKYRKSVY GTQVSVGMRF GMMFETDESG KRRYMGTLVG IGDLDPLRWP GSKWRNLQVE WDEPGCNDKP NRVSAWEIET PESLFIFPSL TSGLKRPLHP GILGAESEWG SLIKRPLLQF PENGNGNLPY SISNLCSEQL MKMMLKPQLV NHPGVFASTL QQISAVKGSP LEEMKNLQST SNQKPQLIQS ENLFVENQNL TQLVPDQPDP INSNLPKINA NGNLHPPANK FESQTQARSS NEKLKLESEH STDQLSQLTS TSECNEEKLA ANAASPSTIL NQLSFPNQNQ IPFPLQNNPW PIQSQLESSA LQAHQMQVPQ ADITTLSSFL PFLDPDEWTS HLSACQPLAG IYRSPGPVPV VGLQDSSAVF TEATDPSLTT GGQDTWDHQL NNCRILSHVD QLTSIPQQDS YNLSSGGVRD LSDDSNNQSG IYSCLNIDVS NGGSTVIDPS VSSAILDEFC SLKDADFQNP SDCLVGNFSS SQDVQSQITS ASLADSQAFS RQELPDSSGG TSSSNVDFDE SGLLQNNSWQ QMAPRVRTYT KVQKAGSVGR SLDVTSFKNY DELISAIECM FGLKGLLNDP RGSGWKLVYV DYENDVLLVG DDPWEEFVGC VRCIRILSPT EVQQMSEEGM KLLNSATVQG INGTNSEGCN A // ID A0A061FE85_THECC Unreviewed; 365 AA. AC A0A061FE85; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=HSI2-like 1 isoform 1 {ECO:0000313|EMBL:EOY12789.1}; GN ORFNames=TCM_031311 {ECO:0000313|EMBL:EOY12789.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY12789.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY12789.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001885; EOY12789.1; -; Genomic_DNA. DR EMBL; CM001885; EOY12790.1; -; Genomic_DNA. DR EMBL; CM001885; EOY12791.1; -; Genomic_DNA. DR EnsemblPlants; EOY12789; EOY12789; TCM_031311. DR EnsemblPlants; EOY12790; EOY12790; TCM_031311. DR EnsemblPlants; EOY12791; EOY12791; TCM_031311. DR Gramene; EOY12789; EOY12789; TCM_031311. DR Gramene; EOY12790; EOY12790; TCM_031311. DR Gramene; EOY12791; EOY12791; TCM_031311. DR OMA; CASAHEE; -. DR Proteomes; UP000026915; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 259 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 259 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 40520 MW; 0FADA4D210216411 CRC64; MAVSPCFAVA VVIASGEMQL LWLQMTKRHR FCSAFSSTAY TFLLWKLWHS AYLKGTFCDT FHPEASGWRD CASCRKRIHC GCIMASSTYT ILDFGGVKCA ECAVNEALAP HRCTPSFWSP QAIQHAMDSA KRLSIDPEKA ITVGMKSDSC VHVAGIKAGI NPIASPDSVV CNVSPNKIAT ATIPGAAFQA QFPLSETGEE SSVNSPHGTN NSCQKKVGKR RKNVYRKTRV QSRYSPQTSL EELKEICRVS KSSLVPLFSK TLTASDAEAR NGRLVLPKRC AEAYFPDISA QQGIFVVVQD IKGDDWEFYY RYWLNTNGKM YVLEGLKDYI ISEQWQPGDT VTVYKREEDG KLFMGLKKVQ AGKSD // ID A0A061FGG7_THECC Unreviewed; 663 AA. AC A0A061FGG7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_035002 {ECO:0000313|EMBL:EOY16141.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY16141.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY16141.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY16141.1; -; Genomic_DNA. DR EnsemblPlants; EOY16141; EOY16141; TCM_035002. DR Gramene; EOY16141; EOY16141; TCM_035002. DR OMA; AGDINHR; -. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 203 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 203 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 663 AA; 73331 MW; DE0A6342F0A75B37 CRC64; MAFPWFLVSL NANKTLLSCP LLRPRDGTLS FLHHLRHTKK HYKNWKKESL RLCIFSTHRS AVLSYFSFIP LNSLPFFSTQ TLSPPMPPPR PPLPPPEFRH VDSRIWRACA GSSVQIPTVH SRVYYFPQGH VEQSWGSTPA LSSLVLSRPL IPCVISEVHC LADPKTDEVF AKLLLVPVDP SRLPNQFLNI NGDDEDSDKI VSFAKILTPS DANNGGGFSV PRFCADSIFP PLDYNAEPPV QTLSVTDVRG GVWDFRHIYR GTPRRHLLTT GWSKFVNQKK LIAGDSVVFM RDCNGNMFIG VRRAMKREAG GDFGRWREPS DGRAMQGEGR GRMTAEAVAE AAERAAKGLP FEVVYYPRAG LADFVVRAEL VEAGLNIFWA GGTRVKMAVE TEDSSRMTWF QGTVMSAAVP DSGPWTGSPW RMLQVAWDEP EVLQNAKRVS PWQVEIVSSS PLNSSFPSAK KLKFSQDSGP ADAEGEIFFP MTGLTNSMMG YMNPSMLNYN SFPAGMQGAR QNHFHLQSLT NYASENTPIM CTDNFSGNYM LPKLKGRSTE LNIGSSQSDN LSPDSQSSIL SYGTEVTVNG GSNSTKVGVS SFQLFGKIIH MKEPVRSRFD DVGSIEDDGG KRDDEAAGPE KSLDLSLAYG YSNLLNRLDV QCQRASAVEG FSL // ID A0A061FJF3_THECC Unreviewed; 549 AA. AC A0A061FJF3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative isoform 1 {ECO:0000313|EMBL:EOY14619.1}; GN ORFNames=TCM_033935 {ECO:0000313|EMBL:EOY14619.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY14619.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY14619.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001886; EOY14619.1; -; Genomic_DNA. DR RefSeq; XP_007017394.1; XM_007017332.2. DR EnsemblPlants; EOY14619; EOY14619; TCM_033935. DR GeneID; 18591287; -. DR Gramene; EOY14619; EOY14619; TCM_033935. DR KEGG; tcc:18591287; -. DR OMA; FTGRKFR; -. DR Proteomes; UP000026915; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 229 325 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 436 532 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 229 325 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 436 532 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 549 AA; 61607 MW; 51287354A3BCEB7A CRC64; MLKLRRRPHF LNVFSSTSSA NRLKIPVGFN RNLEGRTSGS VLLRGPSGYS WVVELVRKDD DLLFVEGWAD FVRDHSVECG DFLVFRYDGD LVFDVKVFDQ SSCEKEAAFH CKCSQGGSEY DRIVGQKRGR EDGGVSLDQD CEGLVKRTRE SSSEFDRDVA DKEHCGYEPI LAAKTRRGLA SCDENNEGTI LKTSGTEDLN LHGGGCTPMV AEFEEKKVAQ SFNSSFPFFV RIMKRFNVSG SYTLNIPYQF AMEHLPKCKT EIVLRNLKGA CWTVNSVPTT RVHTSHTLCG GWLGFVRSNE IKVGDICIFE FVRKFELRVH ILRVGGEDPD RQSGKAVSNV LINRSDATLP IKFVKKSSKV HSKSMKKVQM CDNKGFKMLD KKKYGNAAKK SASVALCSLS RSGNEKQEAA IGGLRMMLAL DEEKAAQSFA SGFPSFVRIM RKFNVSGSYT LKIPYKFSKA YLPYCKTEVV LRNMQGKWWT VNSVPDSKGR AVHTFCGGWM AFVRDNDIKM GDICIFELVN KCEMYVHISG SGRKGLDHQH ASTELLTLR // ID A0A061FL31_THECC Unreviewed; 408 AA. AC A0A061FL31; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY17791.1}; GN ORFNames=TCM_042510 {ECO:0000313|EMBL:EOY17791.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY17791.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY17791.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001888; EOY17791.1; -; Genomic_DNA. DR EnsemblPlants; EOY17791; EOY17791; TCM_042510. DR Gramene; EOY17791; EOY17791; TCM_042510. DR Proteomes; UP000026915; Chromosome 10. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 58 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 138 157 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 169 188 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 200 224 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 267 367 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 267 367 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 45807 MW; 79C9EED8FC9162DB CRC64; MNLKFLPVNI PSPFETHCDI MTMFIITILV YGTNFHTSFS HEIISKYISL LSGSLAPALL ALILFPGYLG RLILLVWTIY FVKLTYDAWR KLYQLYNTIS SVSDFLNQLL GRRGLHNEES IPYITSSSIS TATHQKHAIL GLLIAVFLAL LPLKFASMNT TAAPFETHSA ILSKFVITTL VYAVAWAIET KLETRANSYH HAIISNISLL VGSLATVLLV LILVPGLGRR LEIQADAACV DLKSQSPFLY EFGVGALTGV LRSDMELLFS KTLTATDVQK RLSIPFTCLK DFEFHGSNSA HLRVEDQNGS IWPFALSTRK KGYPKPIFSK GWLQFVRCSH LCEGDRVEFY KDTKANGLYR IQVQRCIKLF GKKCWVTPPL DQRRVNFEEG TEAAAEAEAK EEESKKNI // ID A0A061FL35_THECC Unreviewed; 142 AA. AC A0A061FL35; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY17796.1}; GN ORFNames=TCM_042515 {ECO:0000313|EMBL:EOY17796.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY17796.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY17796.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001888; EOY17796.1; -; Genomic_DNA. DR EnsemblPlants; EOY17796; EOY17796; TCM_042515. DR Gramene; EOY17796; EOY17796; TCM_042515. DR OMA; PFEKRIN; -. DR Proteomes; UP000026915; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 142 AA; 17136 MW; 503297EBB009D776 CRC64; MEKIFSKQLT DTDLKKRLSI PTQCLNHFRF DKCHSTSVQV EDENGKAWHF KCRVRREGYQ KPVFCEGWLK FVRYTSLRPG DRVEFYKDTK AEGLYRIQVQ RRVKLLGKEF WANLRPFEKR INFEERTEVA AKEEKSKRKL SI // ID A0A061FLL3_THECC Unreviewed; 140 AA. AC A0A061FLL3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=ABI3/VP1 2, putative {ECO:0000313|EMBL:EOY17793.1}; GN ORFNames=TCM_042512 {ECO:0000313|EMBL:EOY17793.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY17793.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY17793.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001888; EOY17793.1; -; Genomic_DNA. DR EnsemblPlants; EOY17793; EOY17793; TCM_042512. DR Gramene; EOY17793; EOY17793; TCM_042512. DR OMA; EILWAFE; -. DR Proteomes; UP000026915; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 140 AA; 16546 MW; D388FBD1144AF47A CRC64; MQELRCFLFL TKPFLFQRLL QQTMKQLFSK VLSPTDIEHR LAVPSEILWA FEFDDKARAA DFHVEDVAGQ KWHFSCSTRK KDFHPKPVVS KGWRRFVKDK RLRVGDKVVL YKDGEGGSSH KIKTMKRVFK LFGEEVWLES // ID A0A061FM90_THECC Unreviewed; 135 AA. AC A0A061FM90; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY17792.1}; GN ORFNames=TCM_042511 {ECO:0000313|EMBL:EOY17792.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY17792.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY17792.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001888; EOY17792.1; -; Genomic_DNA. DR EnsemblPlants; EOY17792; EOY17792; TCM_042511. DR Gramene; EOY17792; EOY17792; TCM_042511. DR OMA; PFVASKN; -. DR Proteomes; UP000026915; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 135 AA; 16226 MW; 658F3033B1F9F172 CRC64; METMFSKQLT DTDLKKRLSI PTQCLNHFRF DKGHSTSVQV EDENGKAWQF KCRVRREGYQ KPVFCEGWLK FVRYTNLRPG DRVEFYKDTE AEGLYRIQVQ RRVKLLGKEF WANLRPDEQR INFEERTEAA AKEEK // ID A0A061FPV2_THECC Unreviewed; 686 AA. AC A0A061FPV2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_043157 {ECO:0000313|EMBL:EOY18662.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY18662.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY18662.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001888; EOY18662.1; -; Genomic_DNA. DR EnsemblPlants; EOY18662; EOY18662; TCM_043157. DR Gramene; EOY18662; EOY18662; TCM_043157. DR OMA; IIAKDMH; -. DR Proteomes; UP000026915; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 600 680 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 75484 MW; 0448E34098E2EDFF CRC64; MITVMDSRKE LLKNSEKCLD PQLWHACAGG MVQMPSVNTK VFYFPQGHAE HANGSVDFGS LLIPSLVLCR IAAVKYMADP ETDEVYSKIM LVPSRENDFG YEDDGFDGNI GMENPEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT PRRHLLTTGW SNFVNQKKLV AGDSIVFLRT ENGDLCVGIR RAKRGIGSGH EYPCGWNSGG GSSGSQFGGY SPFFREDESK SMRKDSNGDM RGKVRVESVI EAATCAANGQ PFEVVYYPRA STPEFCVKAS SIRAAMQIQW YPGMRFKMAF ETEDSSRISW FMGTISSVQV VDPIRWPNSP WRLLQVAWDE PDLLHNVKRV SPWLVELVSN IPAIHLNPFS PPRKKMRLPQ HPDFSLLSQI PMPSFSGNSL RSSSPVCCIT DNIPGGIQGA RHAPFGLSSS DLHSNKLQSG LFPLGLQQLD HTAPPTRISN DNLSSDHVNK KNISCMLTTG NPTQSLKESN EVKTPHILLF GQLIFSEQQA SQSCSGDTVG NSSSDGNTEK TAISSDGSGS ALHQNAQENS SEEGSAWCKE HQRSDLGLEA GHCKVFMESE NVGRTLDLSV LRSYEELHGK LANMFGIESS EMLSSVLYCD AAGSVKHTGD EPFSEFLKTA RRLTILMDSG SDNVGR // ID A0A061FT63_THECC Unreviewed; 146 AA. AC A0A061FT63; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY17789.1}; GN ORFNames=TCM_042508 {ECO:0000313|EMBL:EOY17789.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY17789.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY17789.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001888; EOY17789.1; -; Genomic_DNA. DR EnsemblPlants; EOY17789; EOY17789; TCM_042508. DR Gramene; EOY17789; EOY17789; TCM_042508. DR OMA; IDESGFG; -. DR Proteomes; UP000026915; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16786 MW; BFE7F11523048C3A CRC64; MEMLFAKTLT ETDVQKRLSI PFTCLKDFEF HGSNSAQLRV EDQNGSIWSF ALSTRKNGHP KPIFSGGWRQ FVRCGHLCEG DRVEFYKDTK ENGFYRIQVQ RCIKLFGKKC WVALPLDQRR VNFEEGTEAA AAAEAEAKEE ESKKNT // ID A0A061FYM7_THECC Unreviewed; 744 AA. AC A0A061FYM7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_014743 {ECO:0000313|EMBL:EOY22620.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY22620.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY22620.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY22620.1; -; Genomic_DNA. DR EnsemblPlants; EOY22620; EOY22620; TCM_014743. DR Gramene; EOY22620; EOY22620; TCM_014743. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 744 AA; 82672 MW; 8F69E34CDF01E619 CRC64; MTTSEVSIKG NCVNGRGESF SSGYSEPNDA RSTMEGQNGH STRPAAVRDP ETALYTELWH ACAGPLVTVP REGERVFYFA QGHIEQVEAS TNQVADQQMP VYDLPSKILC RVINVQLKAE PDTDEVFAQV TLLPEPNQDE NTVDKEPPIP PPPRFHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGDLRVGVRR AMRQQSNVPS SVISSHSMHL GVLATAWHAY TTRTIFTVYY KPRTSPAEFI VPFDQYVESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDCDPKRWQ DSKWRCLKVR WDETSTIPRP ERVSPWKIEP ALAPPALNPL PMPRPKRPRS NAVPSSPDSS VLTREGSSKV TVDPSPGSGF SRVLQGQEFS TLRGNFAESN ESDTAEKSVI WPPSVDDEKI DVVSASRRFG SENWMSSGRH EPTYTDLLSG FGLNADSSHG YCPPLADQTL AAGNPIRKQL LDKEGKLGSW SLMPSGLSLK LVDNNAKPTL QGSDMPYQAR GNGRFSGFGE YPILQGHRIE PSHGNWLMPP PTSSHFESPA HSRDLISKTS SVQEHEAGKS REGNCKLFGI PLISNSVSSE SAVSHINVLN KPVNHMQPSS HQVRAFESDQ KFEKSKVSQL PEDLSAFNEQ DKTFQLGQPH TREIQSKPPS VSTRSCTKVL SLSS // ID A0A061G322_THECC Unreviewed; 313 AA. AC A0A061G322; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=DNA-binding protein RAV1, putative isoform 2 {ECO:0000313|EMBL:EOY24230.1}; GN ORFNames=TCM_015895 {ECO:0000313|EMBL:EOY24230.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY24230.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY24230.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY24230.1; -; Genomic_DNA. DR EnsemblPlants; EOY24230; EOY24230; TCM_015895. DR Gramene; EOY24230; EOY24230; TCM_015895. DR OMA; KWGARIS; -. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:EOY24230.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 89 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 152 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 89 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 152 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 35751 MW; A302CCCC97FC4A34 CRC64; MVGSSNSNKI IPCRRNSQYR MRSSCSSGRM SSSRFRGVLA LNNSKWGARI SLKYRAYWLG TYQVEEEAAI AYDRAALKLH RSDSPLNFPW KIYTAQEKLF QSSYSNEEIM SMIKDKTYTS NLTSFLARES LVRRSMSGCL INAKGISHQL LFHKKLTQTD VAQIKGFHIP KEYALQYLPP LGNSSDGGQM RNDSVDLTFY DKFYRPWTFR YSYWCTTKTF LFTKGWRHFV AMNNLNIADT IMVYGCAFVE EGQSRNFYMI DIHRNDAANY IVGRDAEQGI GTQPNIVDNG AHVDGISGVE RKNGVKLFGI QIA // ID A0A061G5F3_THECC Unreviewed; 556 AA. AC A0A061G5F3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_016500 {ECO:0000313|EMBL:EOY25080.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY25080.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY25080.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY25080.1; -; Genomic_DNA. DR EnsemblPlants; EOY25080; EOY25080; TCM_016500. DR Gramene; EOY25080; EOY25080; TCM_016500. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 478 556 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 556 AA; 62335 MW; CCA2F692AD63428E CRC64; MMANRGGSFS QTNNVSSEGD GVDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANQP EPTSPDQSPP ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELCVGVRR VARQQSSMPS SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNRYLEALNN KFAVGMRFKM RFEGEDSPER RFSGTIVGVE DFSPHWKDSQ WRSLKVQWDE PASIPRPDRV SPWEIEPFAA PIPPTLGQPL AAKNKRPRPP TEIPALEVKK FETASSCRLF GIELINHSAS STPLERTPTQ LSTMTGGSTE GHGQSSLSPA DSDQKSEISK DSKGKKQEQL QVSAKEIQSR QSCSSSTRSR TKVQMQGVAV GRAVDLTMLE GYDQLIDELE EMFDIKGGLR PRNKWEIVYT DDEGDMMLVG NFVTWSEEYL SVQARM // ID A0A061G6G4_THECC Unreviewed; 856 AA. AC A0A061G6G4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_014743 {ECO:0000313|EMBL:EOY22619.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY22619.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY22619.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY22619.1; -; Genomic_DNA. DR EnsemblPlants; EOY22619; EOY22619; TCM_014743. DR Gramene; EOY22619; EOY22619; TCM_014743. DR OMA; STMAAIH; -. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IEA:EnsemblPlants. DR GO; GO:0010047; P:fruit dehiscence; IEA:EnsemblPlants. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0008285; P:negative regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0048481; P:plant ovule development; IEA:EnsemblPlants. DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants. DR GO; GO:1903288; P:positive regulation of potassium ion import; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 734 818 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 856 AA; 95245 MW; 350983988B91AEFA CRC64; MTTSEVSIKG NCVNGRGESF SSGYSEPNDA RSTMEGQNGH STRPAAVRDP ETALYTELWH ACAGPLVTVP REGERVFYFA QGHIEQVEAS TNQVADQQMP VYDLPSKILC RVINVQLKAE PDTDEVFAQV TLLPEPNQDE NTVDKEPPIP PPPRFHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGDLRVGVRR AMRQQSNVPS SVISSHSMHL GVLATAWHAY TTRTIFTVYY KPRTSPAEFI VPFDQYVESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDCDPKRWQ DSKWRCLKVR WDETSTIPRP ERVSPWKIEP ALAPPALNPL PMPRPKRPRS NAVPSSPDSS VLTREGSSKV TVDPSPGSGF SRVLQGQEFS TLRGNFAESN ESDTAEKSVI WPPSVDDEKI DVVSASRRFG SENWMSSGRH EPTYTDLLSG FGLNADSSHG YCPPLADQTL AAGNPIRKQL LDKEGKLGSW SLMPSGLSLK LVDNNAKPTL QGSDMPYQAR GNGRFSGFGE YPILQGHRIE PSHGNWLMPP PTSSHFESPA HSRDLISKTS SVQEHEAGKS REGNCKLFGI PLISNSVSSE SAVSHINVLN KPVNHMQPSS HQVRAFESDQ KFEKSKVSQL PEDLSAFNEQ DKTFQLGQPH TREIQSKPPS VSTRSCTKVH KQGIALGRSV DLTKFNNYEA LIAELDQLFD FGGELMAPRR GWLVVYTDDE GDMMLVGDDP WQEFCAMVRK IGIYTREEVQ KMKPGSLSSK GEDNPVSAEE LDAKEVKCPG FSAENC // ID A0A061G6N8_THECC Unreviewed; 693 AA. AC A0A061G6N8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_016500 {ECO:0000313|EMBL:EOY25078.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY25078.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY25078.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY25078.1; -; Genomic_DNA. DR EnsemblPlants; EOY25078; EOY25078; TCM_016500. DR Gramene; EOY25078; EOY25078; TCM_016500. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 581 662 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 693 AA; 77451 MW; 78C4F8C8B4361DFA CRC64; MMANRGGSFS QTNNVSSEGD GVDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANQP EPTSPDQSPP ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELCVGVRR VARQQSSMPS SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNRYLEALNN KFAVGMRFKM RFEGEDSPER RFSGTIVGVE DFSPHWKDSQ WRSLKVQWDE PASIPRPDRV SPWEIEPFAA PIPPTLGQPL AAKNKRPRPP TEIPALASAP WNSGVMHSHD LTRRNITAEA KRNENHVMWH HMQTDMNSNC SSISKTQNEG SWLSSPGMSV SQHLFPDGRE DSKSVSGWPV LSGFSKQQLK NESTFDPIEK VKKFETASSC RLFGIELINH SASSTPLERT PTQLSTMTGG STEGHGQSSL SPADSDQKSE ISKDSKGKKQ EQLQVSAKEI QSRQSCSSST RSRTKVQMQG VAVGRAVDLT MLEGYDQLID ELEEMFDIKG GLRPRNKWEI VYTDDEGDMM LVGDDPWLEF CNMVRRIFIC SSQDVKKMST GSKLPMASIE VEGTVISSDS AEN // ID A0A061G7C4_THECC Unreviewed; 671 AA. AC A0A061G7C4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_027113 {ECO:0000313|EMBL:EOY25740.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY25740.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY25740.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY25740.1; -; Genomic_DNA. DR RefSeq; XP_007023118.1; XM_007023056.2. DR RefSeq; XP_017978970.1; XM_018123481.1. DR EnsemblPlants; EOY25740; EOY25740; TCM_027113. DR GeneID; 18595208; -. DR Gramene; EOY25740; EOY25740; TCM_027113. DR KEGG; tcc:18595208; -. DR KO; K14486; -. DR OMA; MWKSPVE; -. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 640 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 671 AA; 74613 MW; 78A94681F7AEE29B CRC64; MAFAAPSAEQ QAGIKDGPLY RELWHACAGP LVTLPREGER VYYFPQGHME QLEASMHQGL EHQMPSFNLP SKILCKVASV QRKAEPDTDE VYAQLTLVPE VDQSEVTSSD PPLPEPERCI VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMTQQPP WQELVATDLH GNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGTNGELRV GVRRLMRQQT NMPSSVISSH SMHLGVLATA SHAIATGSMF SVFYKPRTSR SEFIVSVNKY LEARSHKLSV GMRFKMRFEG EEVPERRFSG TIIGVGDNKS SGWADSEWRS LKVQWDEPSS ILRPDRVSPW ELEPLVVTNT SSNSQPAQRN KRARPPVLPT PSSDLSSLGM WKSPVESPAF SYCDSQRGHS SPKFSSTAKP NSVGFSGNGS VAAVSSNSMY WSNRVESVTE SFAPVVNKES CERKPGPGNG CRLFGIQLDN VNMEENSPVA TVSGTVVDDR LVPSVDADSD QLSDPSNLNR SDRPYVSCDP EKSCLRSPQE SQSKQIRSCT KVHMQGMVVG RAVDLTRFDC YEDLLRKLEE LFDIKGQLCG SARNWQVVYT DDEDDMMMVG DDPWNEFCSM VRKIFIYTSE EVKKLSPKIK LPVNDDSKPA KPGVDTVVNT DDRSSVVSPG C // ID A0A061G7E1_THECC Unreviewed; 698 AA. AC A0A061G7E1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_016500 {ECO:0000313|EMBL:EOY25077.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY25077.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY25077.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY25077.1; -; Genomic_DNA. DR EnsemblPlants; EOY25077; EOY25077; TCM_016500. DR Gramene; EOY25077; EOY25077; TCM_016500. DR OMA; EAMNNKF; -. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 667 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 77955 MW; 0334A042B71C7F40 CRC64; MMANRGGSFS QTNNVSSEGD GVDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANQP EPTSPDQSPP ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELCVGVRR VARQQSSMPS SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNRYLEALNN KFAVGMRFKM RFEGEDSPER RFSGTIVGVE DFSPHWKDSQ WRSLKVQWDE PASIPRPDRV SPWEIEPFAA PIPPTLGQPL AAKNKRPRPP TEIPALDLSS TASAPWNSGV MHSHDLTRRN ITAEAKRNEN HVMWHHMQTD MNSNCSSISK TQNEGSWLSS PGMSVSQHLF PDGREDSKSV SGWPVLSGFS KQQLKNESTF DPIEKVKKFE TASSCRLFGI ELINHSASST PLERTPTQLS TMTGGSTEGH GQSSLSPADS DQKSEISKDS KGKKQEQLQV SAKEIQSRQS CSSSTRSRTK VQMQGVAVGR AVDLTMLEGY DQLIDELEEM FDIKGGLRPR NKWEIVYTDD EGDMMLVGDD PWLEFCNMVR RIFICSSQDV KKMSTGSKLP MASIEVEGTV ISSDSAEN // ID A0A061G856_THECC Unreviewed; 503 AA. AC A0A061G856; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=TCM_027113 {ECO:0000313|EMBL:EOY25741.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY25741.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY25741.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY25741.1; -; Genomic_DNA. DR EnsemblPlants; EOY25741; EOY25741; TCM_027113. DR Gramene; EOY25741; EOY25741; TCM_027113. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 503 503 {ECO:0000313|EMBL:EOY25741.1}. SQ SEQUENCE 503 AA; 55681 MW; 44DE735BDEAC55C3 CRC64; MAFAAPSAEQ QAGIKDGPLY RELWHACAGP LVTLPREGER VYYFPQGHME QLEASMHQGL EHQMPSFNLP SKILCKVASV QRKAEPDTDE VYAQLTLVPE VDQSEVTSSD PPLPEPERCI VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMTQQPP WQELVATDLH GNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGTNGELRV GVRRLMRQQT NMPSSVISSH SMHLGVLATA SHAIATGSMF SVFYKPRTSR SEFIVSVNKY LEARSHKLSV GMRFKMRFEG EEVPERRFSG TIIGVGDNKS SGWADSEWRS LKVQWDEPSS ILRPDRVSPW ELEPLVVTNT SSNSQPAQRN KRARPPVLPT PSSDLSSLGM WKSPVESPAF SYCDSQRGHS SPKFSSTAKP NSVGFSGNGS VAAVSSNSMY WSNRVESVTE SFAPVVNKES CERKPGPGNG CRLFGIQLDN VNMEENSPVA TVSGTVVDDR LVP // ID A0A061G9U8_THECC Unreviewed; 468 AA. AC A0A061G9U8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOY23814.1}; GN ORFNames=TCM_015590 {ECO:0000313|EMBL:EOY23814.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY23814.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY23814.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY23814.1; -; Genomic_DNA. DR EnsemblPlants; EOY23814; EOY23814; TCM_015590. DR Gramene; EOY23814; EOY23814; TCM_015590. DR OMA; MDCPITD; -. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 468 AA; 52243 MW; 38F9C38D9B6203EC CRC64; MGVYCPSLVF VFGSFWSKEE STDFLIVLRD PRGKVTIGAK KFMDFGSSGR EGFSEEEQMG KGKLPISYSS SSSPSSSSSQ HKTQLVPPLS NCRWEKQPHP IYDSHHQMSP NWLGNRYEPE EDNEATATAT ASEADSKRVD SDSTLELKSS ASANIEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFQRGV GEFGKDRLFI DWRRRPDAPD PASFHPHQHH FSFHRSIPWS PLLMRPPPTG RDHFHLSQIH PLNRNSYYGG YPTGSNVMNP AGGTMEPVFY WRSAVAAAAP QMGMGMGLGM MEWQQQTGGV VEPIVFDSVP VVQGKAAAKR LRLFGVNMEC PTSASSDECE MLSPTTIANA TMASQPPQLS SSSQHPLQLR LYNGTPLPPT DFLNANKGKA SMSLDLDM // ID A0A061GB32_THECC Unreviewed; 293 AA. AC A0A061GB32; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=DNA-binding protein RAV1, putative isoform 1 {ECO:0000313|EMBL:EOY24229.1}; GN ORFNames=TCM_015895 {ECO:0000313|EMBL:EOY24229.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY24229.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY24229.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY24229.1; -; Genomic_DNA. DR EnsemblPlants; EOY24229; EOY24229; TCM_015895. DR Gramene; EOY24229; EOY24229; TCM_015895. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:EOY24229.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 69 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 132 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 69 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 132 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33458 MW; E9F023AB83864194 CRC64; MRSSCSSGRM SSSRFRGVLA LNNSKWGARI SLKYRAYWLG TYQVEEEAAI AYDRAALKLH RSDSPLNFPW KIYTAQEKLF QSSYSNEEIM SMIKDKTYTS NLTSFLARES LVRRSMSGCL INAKGISHQL LFHKKLTQTD VAQIKGFHIP KEYALQYLPP LGNSSDGGQM RNDSVDLTFY DKFYRPWTFR YSYWCTTKTF LFTKGWRHFV AMNNLNIADT IMVYGCAFVE EGQSRNFYMI DIHRNDAANY IVGRDAEQGI GTQPNIVDNG AHVDGISGVE RKNGVKLFGI QIA // ID A0A061GCH9_THECC Unreviewed; 902 AA. AC A0A061GCH9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_029410 {ECO:0000313|EMBL:EOY27585.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY27585.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY27585.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY27585.1; -; Genomic_DNA. DR RefSeq; XP_007024963.1; XM_007024901.2. DR EnsemblPlants; EOY27585; EOY27585; TCM_029410. DR GeneID; 18596441; -. DR Gramene; EOY27585; EOY27585; TCM_029410. DR OMA; SLCHQQS; -. DR Proteomes; UP000026915; Chromosome 6. DR ExpressionAtlas; A0A061GCH9; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 769 853 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 902 AA; 99537 MW; B8E2E3EF8A248284 CRC64; MRLASAGFNP QTQEDFAGEK RVLNSELWHA CAGPLVSLPP VGSRVVYFPQ GHSEQVAAST NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ANRPQTVMPS SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYIKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPARW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPA PFPLRLKRPW PPGLPSFHGI KDDDLGMNSP LMWLRGDADR GMQSLNLQGI GVTPWMQPRL DASMVGLPAD MYQAMAAAAL QDLRAVDPSK PATASLLQFQ QPQNLPCRPA ALMQPQMLQQ SQPQAFLQGV EDNQHQSQSQ AQTPPHLLQQ QLQHQNSFNN QQHPQHPLSQ QHQQLVDHQQ IHSAVSAMSQ YASASQSQSS SLQAMPSLCQ QQSFSDSNGN TVTSPIVSPL HSLLGSFPQD ESSNLLNLPR SNPVITSAAW PSKRAAVEVL SSGSPQCVLP QVEQLGPTQT NMSQNSISLP PFPGRECSID QEGGTDPQSH LLFGVNIEPS SLLMPNGMSS LRGVGSDSDS TTIPFSSNYM STAGTDFSVN PAMTPSSCID ESGFLQSPEN VGQGNPQTRT FVKVYKSGSF GRSLDISKFS SYNELRSELA RMFGLEGQLE DPLRSGWQLV FVDRENDVLL LGDDPWPEFV NSVWCIKILS PQEVQQMGKR GLELLNSVPV QRLSNGSCDD YVSRQDSRNL SSGIASVGSL DY // ID A0A061GDE4_THECC Unreviewed; 685 AA. AC A0A061GDE4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=TCM_029410 {ECO:0000313|EMBL:EOY27586.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY27586.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY27586.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY27586.1; -; Genomic_DNA. DR EnsemblPlants; EOY27586; EOY27586; TCM_029410. DR Gramene; EOY27586; EOY27586; TCM_029410. DR Proteomes; UP000026915; Chromosome 6. DR ExpressionAtlas; A0A061GDE4; differential. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 660 680 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 4 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOY27586.1}. SQ SEQUENCE 685 AA; 75489 MW; 604ECDFE7BAF8BBD CRC64; TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQQPP AQELIARDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHLGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLAKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPAPFPLRL KRPWPPGLPS FHGIKDDDLG MNSPLMWLRG DADRGMQSLN LQGIGVTPWM QPRLDASMVG LPADMYQAMA AAALQDLRAV DPSKPATASL LQFQQPQNLP CRPAALMQPQ MLQQSQPQAF LQGVEDNQHQ SQSQAQTPPH LLQQQLQHQN SFNNQQHPQH PLSQQHQQLV DHQQIHSAVS AMSQYASASQ SQSSSLQAMP SLCQQQSFSD SNGNTVTSPI VSPLHSLLGS FPQDESSNLL NLPRSNPVIT SAAWPSKRAA VEVLSSGSPQ CVLPQVEQLG PTQTNMSQNS ISLPPFPGRE CSIDQEGGTD PQSHLLFGVN IEPSSLLMPN GMSSLRGVGS DSDSTTIPFS SNYMSTAGTD FSVNPAMTPS SCIDESGFLQ SPENVGQGNP QTRTFVKVSD LLFLIYTSRL MNLAGLLSSI GFVNFVALVL RTQIF // ID A0A061GDF8_THECC Unreviewed; 590 AA. AC A0A061GDF8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_016500 {ECO:0000313|EMBL:EOY25079.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY25079.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY25079.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001881; EOY25079.1; -; Genomic_DNA. DR EnsemblPlants; EOY25079; EOY25079; TCM_016500. DR Gramene; EOY25079; EOY25079; TCM_016500. DR Proteomes; UP000026915; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 478 559 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 590 AA; 65929 MW; B7AE2A92AFE0C5D9 CRC64; MMANRGGSFS QTNNVSSEGD GVDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANQP EPTSPDQSPP ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELCVGVRR VARQQSSMPS SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNRYLEALNN KFAVGMRFKM RFEGEDSPER RFSGTIVGVE DFSPHWKDSQ WRSLKVQWDE PASIPRPDRV SPWEIEPFAA PIPPTLGQPL AAKNKRPRPP TEIPALEVKK FETASSCRLF GIELINHSAS STPLERTPTQ LSTMTGGSTE GHGQSSLSPA DSDQKSEISK DSKGKKQEQL QVSAKEIQSR QSCSSSTRSR TKVQMQGVAV GRAVDLTMLE GYDQLIDELE EMFDIKGGLR PRNKWEIVYT DDEGDMMLVG DDPWLEFCNM VRRIFICSSQ DVKKMSTGSK LPMASIEVEG TVISSDSAEN // ID A0A061GE40_THECC Unreviewed; 744 AA. AC A0A061GE40; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_029792 {ECO:0000313|EMBL:EOY28140.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28140.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28140.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28140.1; -; Genomic_DNA. DR EnsemblPlants; EOY28140; EOY28140; TCM_029792. DR Gramene; EOY28140; EOY28140; TCM_029792. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 744 AA; 81352 MW; 993D51ACDA9BD50A CRC64; MGGLIDLNTT EDDETPSSGS LSPSSSSTSV LSASGISAPG SASSSSVCLE LWHACAGPLI SLPKRGSVVV YFPQGHLEQV SDFSGVAAAY DLPPHVFCRV VDVKLHAEAA TDEVYAQVSL VPESEQTEQK LREGKIEAGG EEEDVEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGEDGE LRLGIRRAAQ IKNGTSFPSL CSQQLNRSNF ADVVHAISMK SVFSIYYNPR ASSSEFIIPV HKFWKSLDHS FAVGMRFKMR FETEDAAERR YTGLVTGISD MDPVRWPGSK WRCLLVRWDD IDANRHSRVS PWEIELSGTI SSSNNLLTPG VKRNRIGLPS GKPEFMVPDG IGASDFGEPL RFQKVLQGQE ILGFNTLYDG ADGQNLHRSE IRRCFPGSNG SGIVAIGNVG RDPLGNSEIS YRGVGFGESF RFHKVLQGQE IYVSPPYIRG PTTNDTQEND GLGVRDAGQF SGTRSGWSSL MQSYNTHSHI RPSAPSAQVS SPSSVLMFQQ ASNPIPNINP IYSVNNQEKE QGVDNRSSFR APEMYGGKLL QSSTGECSSR GRHHGTFDSF GHSNDSVQLG DSQPLAAQPT FRTSQDIASS CKSSCRLFGF SLTEGSQDAN KEDNMVKATS SLGPRAFLPC IGEQFHPKPP AVTNTVGSNC TKGILQRCLK NYIY // ID A0A061GE44_THECC Unreviewed; 543 AA. AC A0A061GE44; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=TCM_029792 {ECO:0000313|EMBL:EOY28145.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28145.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28145.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28145.1; -; Genomic_DNA. DR EnsemblPlants; EOY28145; EOY28145; TCM_029792. DR Gramene; EOY28145; EOY28145; TCM_029792. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 54 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 54 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOY28145.1}. SQ SEQUENCE 543 AA; 60035 MW; 0956CEE42CA667C8 CRC64; EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI RRAAQIKNGT SFPSLCSQQL NRSNFADVVH AISMKSVFSI YYNPRASSSE FIIPVHKFWK SLDHSFAVGM RFKMRFETED AAERRYTGLV TGISDMDPVR WPGSKWRCLL VRWDDIDANR HSRVSPWEIE LSGTISSSNN LLTPGVKRNR IGLPSGKPEF MVPDGIGASD FGEPLRFQKV LQGQEILGFN TLYDGADGQN LHRSEIRRCF PGSNGSGIVA IGNVGRDPLG NSEISYRGVG FGESFRFHKV LQGQEIYVSP PYIRGPTTND TQENDGLGVR DAGQFSGTRS GWSSLMQSYN THSHIRPSAP SAQVSSPSSV LMFQQASNPI PNINPIYSVN NQEKEQGVDN RSSFRAPEMY GGKLLQSSTG ECSSRGRHHG TFDSFGHSND SVQLGDSQPL AAQPTFRTSQ DIASSCKSSC RLFGFSLTEG SQDANKEDNM VKATSSLGPR AFLPCIGEQF HPKPPAVTNT VGSNCTKVSN LYAVRDMLFD IAL // ID A0A061GF00_THECC Unreviewed; 606 AA. AC A0A061GF00; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_029792 {ECO:0000313|EMBL:EOY28141.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28141.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28141.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28141.1; -; Genomic_DNA. DR EnsemblPlants; EOY28141; EOY28141; TCM_029792. DR Gramene; EOY28141; EOY28141; TCM_029792. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 606 AA; 66897 MW; 30BE7BB89592044C CRC64; MSKQISSQRR PTCSARPLRL LIPVHMEASL FRVELLRTAS RPWIIISRGP HKSLLQKTFM AWNGGFDTFI GGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL GIRRAAQIKN GTSFPSLCSQ QLNRSNFADV VHAISMKSVF SIYYNPSRAS SSEFIIPVHK FWKSLDHSFA VGMRFKMRFE TEDAAERRYT GLVTGISDMD PVRWPGSKWR CLLVRWDDID ANRHSRVSPW EIELSGTISS SNNLLTPGVK RNRIGLPSGK PEFMVPDGIG ASDFGEPLRF QKVLQGQEIL GFNTLYDGAD GQNLHRSEIR RCFPGSNGSG IVAIGNVGRD PLGNSEISYR GVGFGESFRF HKVLQGQEIY VSPPYIRGPT TNDTQENDGL GVRDAGQFSG TRSGWSSLMQ SYNTHSHIRP SAPSAQVSSP SSVLMFQQAS NPIPNINPIY SVNNQEKEQG VDNRSSFRAP EMYGGKLLQS STGECSSRGR HHGTFDSFGH SNDSVQLGDS QPLAAQPTFR TSQDIASSCK SSCRLFGFSL TEGSQDANKE DNMVKATSSL GPRAFLPCIG EQFHPKPPAV TNTVGSNCTK VSNLYAVRDM LFDIAL // ID A0A061GF82_THECC Unreviewed; 559 AA. AC A0A061GF82; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOY28206.1}; GN ORFNames=TCM_029838 {ECO:0000313|EMBL:EOY28206.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28206.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28206.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28206.1; -; Genomic_DNA. DR EnsemblPlants; EOY28206; EOY28206; TCM_029838. DR Gramene; EOY28206; EOY28206; TCM_029838. DR OMA; YPFFLGQ; -. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 309 413 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 309 413 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 559 AA; 63013 MW; 5AC74539D906DF46 CRC64; MTWRLFSIVP LQTENCDLLC KLNLRAALDM ASEWQCSGAD NGHCEVKQTA KTTLKDADIP SSISASLPYD SPFHELLVTD EPKTATFNPK VAPTLSQALS VMENSYTPFT PTTTTTTNTT LRQPDMGWSQ NSEFSIYEPM NLKNFSSTPF STASNSQFHH PPQFVAPSQS LQPPYRHPIE QAGHSLAYPM YPFFLGQNGI EYGVSSSIHA NNGVQGSCFM QTDGLSKEQE RRIMDPYRTK VARIKRKLAR QRSLSLQRNA SSGASTQVDA RRLTSSGADN STDVNNSNDT KRDLYKFCTP DNKRLRVLLR KELKNSDVGS LGRIVLPKRE AEGNLPTLSD KEGIQVMIKD VYSNQVWTLK YKFWSNNKSR MYVLENTGDF VKQNGLEIGD SLTLYEDESK NLGEQYFSII KLERIIAANP PSNHQHSDNE NNYYSNNDHH HMYLPFTCQS RDEEETSLEL LIEQLKHKEQ QETNDLMSLP MDAAYSHRLP EEAKSFLSDA DGVASMETYT PIAATTLQTS STLLRGKAKS VDDFQLNNFD DCYGGLDMLP DVNHYNFSL // ID A0A061GFF5_THECC Unreviewed; 748 AA. AC A0A061GFF5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_029792 {ECO:0000313|EMBL:EOY28143.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28143.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28143.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28143.1; -; Genomic_DNA. DR EnsemblPlants; EOY28143; EOY28143; TCM_029792. DR Gramene; EOY28143; EOY28143; TCM_029792. DR OMA; IVDYPFC; -. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 748 AA; 81708 MW; 4750D8A75681AA85 CRC64; MGGLIDLNTT EDDETPSSGS LSPSSSSTSV LSASGISAPG SASSSSVCLE LWHACAGPLI SLPKRGSVVV YFPQGHLEQV SDFSGVAAAY DLPPHVFCRV VDVKLHAEAA TDEVYAQVSL VPESEQTEQK LREGKIEAGG EEEDVEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGEDGE LRLGIRRAAQ IKNGTSFPSL CSQQLNRSNF ADVVHAISMK SVFSIYYNPR ASSSEFIIPV HKFWKSLDHS FAVGMRFKMR FETEDAAERR YTGLVTGISD MDPVRWPGSK WRCLLVRWDD IDANRHSRVS PWEIELSGTI SSSNNLLTPG VKRNRIGLPS GKPEFMVPDG IGASDFGEPL RFQKVLQGQE ILGFNTLYDG ADGQNLHRSE IRRCFPGSNG SGIVAIGNVG RDPLGNSEIS YRGVGFGESF RFHKVLQGQE IYVSPPYIRG PTTNDTQEND GLGVRDAGQF SGTRSGWSSL MQSYNTHSHI RPSAPSAQVS SPSSVLMFQQ ASNPIPNINP IYSVNNQEKE QGVDNRSSFR APEMYGGKLL QSSTGECSSR GRHHGTFDSF GHSNDSVQLG DSQPLAAQPT FRTSQDIASS CKSSCRLFGF SLTEGSQDAN KEDNMVKATS SLGPRAFLPC IGEQFHPKPP AVTNTVGSNC TKVSNLYAVR DMLFDIAL // ID A0A061GG49_THECC Unreviewed; 887 AA. AC A0A061GG49; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=HSI2-like 1 isoform 2 {ECO:0000313|EMBL:EOY28398.1}; GN ORFNames=TCM_029976 {ECO:0000313|EMBL:EOY28398.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28398.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28398.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28398.1; -; Genomic_DNA. DR EnsemblPlants; EOY28398; EOY28398; TCM_029976. DR Gramene; EOY28398; EOY28398; TCM_029976. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 341 442 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 568 618 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 341 442 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 887 AA; 97135 MW; 77C8F7D7B40F86E3 CRC64; MTSTSGAASS SKICFNSDCK DLKSERARKG WRLRTGELAE LCDRCASAFE EGRFCDTFHL NASGWRSCES CGKRVHCGCI VSVYAFTLLD AGGIECIACA RKNVVLGSNS SWPPSLLFHP PLSERLKDYS AKGWSQLAGS GPVPWRQAPS LFNSPISQPE WHSKVCYEVD LSTGIDRLNA DRLSTPSLEK KKIEDFSERL MNGTLKLGTR DIHENGNAGI NCEEQPGSCL TKSQQPSLKE EPSNPPLGLS VPYTSPDEAN GQIGVSGPHL RPNPPPPLAK QFHSNLHNGL DSSGETQIRN GRPRPDGRGR NQLFPRYWPR FTDQDLQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SQPEGLPLKV QDSKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQNMQLQAG DVVTFSRLEP GGKLVMGCRK ASTASASEQD NEAKNSNGVS THGDAELADP TSWSKVDKSG YIAKEALGTK LAVSRKRKNS TLGSKSKRLR IDNEDLIELK LTWEEAQGLL RPPPNHVPSV VVIEGFEFEE YEDAPILGKP TIFATDNSGE KIQWAQCEDC FKWRRLPSSA LLPSKWTCAS NSWDPERSFC SVAQELTAEQ LDDLLPHCNP AASKKMKAAK QEPENVDALE GLDTLANLAI LGEGEALPAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCQ TVKRRFRTLM LRREKKQSQK EAETTRKKQQ PSLPDKLLDD DPLPSTNAGN SSPNPKKLVS EGSDDDPNRI KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMMRLLQDAT ERYLRQQRML SSGVNSDSTV TQAQSGGGTE GEKTSSSVNL GASHQDADRD HSAVFSIKSS APTSATG // ID A0A061GG84_THECC Unreviewed; 745 AA. AC A0A061GG84; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_029792 {ECO:0000313|EMBL:EOY28142.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28142.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28142.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28142.1; -; Genomic_DNA. DR EnsemblPlants; EOY28142; EOY28142; TCM_029792. DR Gramene; EOY28142; EOY28142; TCM_029792. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 745 AA; 81439 MW; E45E2236E2455E7B CRC64; MGGLIDLNTT EDDETPSSGS LSPSSSSTSV LSASGISAPG SASSSSVCLE LWHACAGPLI SLPKRGSVVV YFPQGHLEQV SDFSGVAAAY DLPPHVFCRV VDVKLHAEAA TDEVYAQVSL VPESEQTEQK LREGKIEAGG EEEDVEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGEDGE LRLGIRRAAQ IKNGTSFPSL CSQQLNRSNF ADVVHAISMK SVFSIYYNPS RASSSEFIIP VHKFWKSLDH SFAVGMRFKM RFETEDAAER RYTGLVTGIS DMDPVRWPGS KWRCLLVRWD DIDANRHSRV SPWEIELSGT ISSSNNLLTP GVKRNRIGLP SGKPEFMVPD GIGASDFGEP LRFQKVLQGQ EILGFNTLYD GADGQNLHRS EIRRCFPGSN GSGIVAIGNV GRDPLGNSEI SYRGVGFGES FRFHKVLQGQ EIYVSPPYIR GPTTNDTQEN DGLGVRDAGQ FSGTRSGWSS LMQSYNTHSH IRPSAPSAQV SSPSSVLMFQ QASNPIPNIN PIYSVNNQEK EQGVDNRSSF RAPEMYGGKL LQSSTGECSS RGRHHGTFDS FGHSNDSVQL GDSQPLAAQP TFRTSQDIAS SCKSSCRLFG FSLTEGSQDA NKEDNMVKAT SSLGPRAFLP CIGEQFHPKP PAVTNTVGSN CTKGILQRCL KNYIY // ID A0A061GGV7_THECC Unreviewed; 905 AA. AC A0A061GGV7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Transcription factor, putative isoform 1 {ECO:0000313|EMBL:EOY28397.1}; GN ORFNames=TCM_029976 {ECO:0000313|EMBL:EOY28397.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28397.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28397.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28397.1; -; Genomic_DNA. DR EnsemblPlants; EOY28397; EOY28397; TCM_029976. DR Gramene; EOY28397; EOY28397; TCM_029976. DR OMA; CASAYEQ; -. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 355 456 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 355 456 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 905 AA; 99319 MW; 8D6CA09D05179B58 CRC64; MTSTSGAASS SKICFNSDCK DLKSERARKG WRLRTGELAE LCDRCASAFE EGRFCDTFHL NASGWRSCES CGKRVHCGCI VSVYAFTLLD AGGIECIACA RKNVVLGSNS SWPPSLLFHP PLSERLKDYS AKGWSQLAGS GPVPWRQAPS LFNSPISQPE WHSKVCYEVD LSTGIDRLNA DRLSTPSLEK KKIEDFSERL MNGTLKLGTR DIHENGNAGI NCEEQPGSCL TKSQQPSLKE EPSNPPLGLS VPYTSPDEAN GQIGVSGPHL RPNPPPPLAK QFHSNLHNGL DSSGETQIRN GRPRPDGRGR NQLFPRYWPR FTDQDLQQIS GEYPLILWGI LDNWECSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPPISQPEGL PLKVQDSKGK EWIFQFRFWP NNNSRMYVLE GVTPCIQNMQ LQAGDVVTFS RLEPGGKLVM GCRKASTASA SEQDNEAKNN SSASPSFSSI NQAELADPTS WSKVDKSGYI AKEALGTKLA VSRKRKNSTL GSKSKRLRID NEDLIELKLT WEEAQGLLRP PPNHVPSVVV IEGFEFEEYE DAPILGKPTI FATDNSGEKI QWAQCEDCFK WRRLPSSALL PSKWTCASNS WDPERSFCSV AQELTAEQLD DLLPHCNPAA SKKMKAAKQE PENVDALEGL DTLANLAILG EGEALPASSQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCQTV KRRFRTLMLR REKKQSQKEA ETTRKKQQPS LPDKLLDDDP LPSTNAGNSS PNPKKLVSEG SDDDPNRIKS STSPFKGQID LNIQPEREEE LSPGSDSGSM MRLLQDATER YLRQQRMLSS GVNSDSTVTQ AQSGGGTEGE KTSSSVNLGA SHQDADRDHS AVFSIKSSAP TSATG // ID A0A061GHD1_THECC Unreviewed; 214 AA. AC A0A061GHD1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=DNA binding protein, putative isoform 2 {ECO:0000313|EMBL:EOY29250.1}; DE Flags: Fragment; GN ORFNames=TCM_036843 {ECO:0000313|EMBL:EOY29250.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY29250.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY29250.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY29250.1; -; Genomic_DNA. DR EnsemblPlants; EOY29250; EOY29250; TCM_036843. DR Gramene; EOY29250; EOY29250; TCM_036843. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 86 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 129 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 86 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 129 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 214 214 {ECO:0000313|EMBL:EOY29250.1}. SQ SEQUENCE 214 AA; 24727 MW; 7214FA8A14EFF46B CRC64; MSNAKFTPIM PHFLKPLLPG FHKQLNCERA VLRSCGSRTW SVKLKGRRFE DGWEEFARDH DLYVGDVLVF RHGGNMVFDV MVFDTRSACQ REYPLFAMKG KDQKKSSAKR FGKQLEKCTS TSFKHEHPYF VATLKPNNLK VSKLNIPRKF ARSNGLTDRF CEMVLVDQQG RSWIANLRHK KSDGQVYIGR GWRNLCIANN LKEEDSVLLE LIGN // ID A0A061GKH9_THECC Unreviewed; 899 AA. AC A0A061GKH9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_029410 {ECO:0000313|EMBL:EOY27584.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY27584.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY27584.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY27584.1; -; Genomic_DNA. DR RefSeq; XP_007024962.1; XM_007024900.2. DR EnsemblPlants; EOY27584; EOY27584; TCM_029410. DR GeneID; 18596441; -. DR Gramene; EOY27584; EOY27584; TCM_029410. DR KEGG; tcc:18596441; -. DR Proteomes; UP000026915; Chromosome 6. DR ExpressionAtlas; A0A061GKH9; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99204 MW; 5FC6164CF8184B21 CRC64; MRLASAGFNP QTQEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPAPFP LRLKRPWPPG LPSFHGIKDD DLGMNSPLMW LRGDADRGMQ SLNLQGIGVT PWMQPRLDAS MVGLPADMYQ AMAAAALQDL RAVDPSKPAT ASLLQFQQPQ NLPCRPAALM QPQMLQQSQP QAFLQGVEDN QHQSQSQAQT PPHLLQQQLQ HQNSFNNQQH PQHPLSQQHQ QLVDHQQIHS AVSAMSQYAS ASQSQSSSLQ AMPSLCQQQS FSDSNGNTVT SPIVSPLHSL LGSFPQDESS NLLNLPRSNP VITSAAWPSK RAAVEVLSSG SPQCVLPQVE QLGPTQTNMS QNSISLPPFP GRECSIDQEG GTDPQSHLLF GVNIEPSSLL MPNGMSSLRG VGSDSDSTTI PFSSNYMSTA GTDFSVNPAM TPSSCIDESG FLQSPENVGQ GNPQTRTFVK VYKSGSFGRS LDISKFSSYN ELRSELARMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWPEFVNSV WCIKILSPQE VQQMGKRGLE LLNSVPVQRL SNGSCDDYVS RQDSRNLSSG IASVGSLDY // ID A0A061GLE1_THECC Unreviewed; 1146 AA. AC A0A061GLE1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_037484 {ECO:0000313|EMBL:EOY30198.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY30198.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY30198.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY30198.1; -; Genomic_DNA. DR EnsemblPlants; EOY30198; EOY30198; TCM_037484. DR Gramene; EOY30198; EOY30198; TCM_037484. DR OMA; LWASQTQ; -. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1019 1112 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 645 674 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1146 AA; 128139 MW; A474385169455D7D CRC64; MKAPPNGFLA NSAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDAPSSI FPGLSLVQWM SMQQNNQFPA AQSGCFPSMV SSNPLHNNLS TDDPSKLLNF QAPVSPASNM PFNKANANQV NQLPQAPMTW PQQQQLQQLL QTPLSQHQQQ QQQTQQQLQR QQPQQPQQPQ QQPQQHLLHQ QQPQSQPQQQ QQQQQQQQQQ QQRQQPQLQQ QLQQQAFLPA QVNNGIIAPT QISNQNLHQP AVYSQLQQQQ LLTGNSQSTQ AILSANKTSY PLTSLPQDTQ IQQQMEQQTN LIQRQQQQTQ LQQQQTQLQQ QQTQLQQSPL QLLQQSLSQR TQQQPQIQQL SPQGLSDQQL QLQLLQKLQQ QQQQQQQQQS SQQLLSPAGS LLQPPMVQQQ QTHQQNQPLQ QLPLSQSQPQ PLGSNGFSTS TLMQPQQLSM NQPQSQNKPL VAMRTHSGLT DGDAPSCSTS PSTNNCQVSP SNFLNRSQQV PSILVTDPVV EPASTLVQEL QNKSDIRIKH ELPTSKGPDQ SKYKSTVTDQ LEASSSGTSY CLDAGTIQHN FSLPPFLEGD VQSHPRNNLP FTANIDGLAP DTLLSRGYDS QKDLQNLLSN YGGTPRDIDT ELSTAAISSQ SFGVPNIPFK PGCSNDVAIN DTGVLNGGLW ASQTQRMRTY TKKVQKRGSV GRSIDVTRYK GYDELRHDLA RMFGIEGQLE DPQSSDWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS SAEVQQMSLD GDLGNVAVPN QACSGTDSGN AWRGHYDDTS AASFNR // ID A0A061GM30_THECC Unreviewed; 539 AA. AC A0A061GM30; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=TCM_029792 {ECO:0000313|EMBL:EOY28144.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY28144.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY28144.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001884; EOY28144.1; -; Genomic_DNA. DR EnsemblPlants; EOY28144; EOY28144; TCM_029792. DR Gramene; EOY28144; EOY28144; TCM_029792. DR Proteomes; UP000026915; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 54 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 54 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOY28144.1}. SQ SEQUENCE 539 AA; 59679 MW; 831A9CE1A1F2E908 CRC64; EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI RRAAQIKNGT SFPSLCSQQL NRSNFADVVH AISMKSVFSI YYNPRASSSE FIIPVHKFWK SLDHSFAVGM RFKMRFETED AAERRYTGLV TGISDMDPVR WPGSKWRCLL VRWDDIDANR HSRVSPWEIE LSGTISSSNN LLTPGVKRNR IGLPSGKPEF MVPDGIGASD FGEPLRFQKV LQGQEILGFN TLYDGADGQN LHRSEIRRCF PGSNGSGIVA IGNVGRDPLG NSEISYRGVG FGESFRFHKV LQGQEIYVSP PYIRGPTTND TQENDGLGVR DAGQFSGTRS GWSSLMQSYN THSHIRPSAP SAQVSSPSSV LMFQQASNPI PNINPIYSVN NQEKEQGVDN RSSFRAPEMY GGKLLQSSTG ECSSRGRHHG TFDSFGHSND SVQLGDSQPL AAQPTFRTSQ DIASSCKSSC RLFGFSLTEG SQDANKEDNM VKATSSLGPR AFLPCIGEQF HPKPPAVTNT VGSNCTKGIL QRCLKNYIY // ID A0A061GM54_THECC Unreviewed; 1145 AA. AC A0A061GM54; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_037484 {ECO:0000313|EMBL:EOY30197.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY30197.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY30197.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY30197.1; -; Genomic_DNA. DR EnsemblPlants; EOY30197; EOY30197; TCM_037484. DR Gramene; EOY30197; EOY30197; TCM_037484. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1018 1111 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 645 674 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1145 AA; 128011 MW; F16F1528EE078B04 CRC64; MKAPPNGFLA NSAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDAPSSI FPGLSLVQWM SMQQNNQFPA AQSGCFPSMV SSNPLHNNLS TDDPSKLLNF QAPVSPASNM PFNKANANQV NQLPQAPMTW PQQQQLQQLL QTPLSQHQQQ QQQTQQQLQR QQPQQPQQPQ QQPQQHLLHQ QQPQSQPQQQ QQQQQQQQQQ QQRQQPQLQQ QLQQQAFLPA QVNNGIIAPT QISNQNLHQP AVYSQLQQQQ LLTGNSQSTQ AILSANKTSY PLTSLPQDTQ IQQQMEQQTN LIQRQQQQTQ LQQQQTQLQQ QQTQLQQSPL QLLQQSLSQR TQQQPQIQQL SPQGLSDQQL QLQLLQKLQQ QQQQQQQQQS SQQLLSPAGS LLQPPMVQQQ QTHQQNQPLQ QLPLSQSQPQ PLGSNGFSTS TLMQPQQLSM NQPQSQNKPL VAMRTHSGLT DGDAPSCSTS PSTNNCQVSP SNFLNRSQQV PSILVTDPVV EPASTLVQEL QNKSDIRIKH ELPTSKGPDQ SKYKSTVTDQ LEASSSGTSY CLDAGTIQHN FSLPPFLEGD VQSHPRNNLP FTANIDGLAP DTLLSRGYDS QKDLQNLLSN YGGTPRDIDT ELSTAAISSQ SFGVPNIPFK PGCSNDVAIN DTGVLNGGLW ASQTQRMRTY TKVQKRGSVG RSIDVTRYKG YDELRHDLAR MFGIEGQLED PQSSDWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS AEVQQMSLDG DLGNVAVPNQ ACSGTDSGNA WRGHYDDTSA ASFNR // ID A0A061GN34_THECC Unreviewed; 91 AA. AC A0A061GN34; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EOY30946.1}; GN ORFNames=TCM_037983 {ECO:0000313|EMBL:EOY30946.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY30946.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY30946.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY30946.1; -; Genomic_DNA. DR EnsemblPlants; EOY30946; EOY30946; TCM_037983. DR Gramene; EOY30946; EOY30946; TCM_037983. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 91 AA; 10458 MW; 808AD3FD5B752433 CRC64; MYLPSCLAEK HLSGVSGFIK LQLPDGKQWP VRCLYRGGRA KFSQCWYEFT LENNLGEGDV CVFELLRSRE FVLKVTVFRV LESAGLMNRP Q // ID A0A061GNJ5_THECC Unreviewed; 233 AA. AC A0A061GNJ5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 domain-containing protein, putative {ECO:0000313|EMBL:EOY30697.1}; GN ORFNames=TCM_037820 {ECO:0000313|EMBL:EOY30697.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY30697.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY30697.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY30697.1; -; Genomic_DNA. DR EnsemblPlants; EOY30697; EOY30697; TCM_037820. DR Gramene; EOY30697; EOY30697; TCM_037820. DR OMA; NGKEYPM; -. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 218 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 233 AA; 26312 MW; 555BB174D9D17653 CRC64; MDKSKGIENG YPEEYREQYL AALTVASFKY EKLSNETALA LNGLKTKIVR QVRAKRNKPK ALKEPNPTGG SVNAQNLPGT PSLCLPLSSY FPPDIPPVAR LNGLIGRCSK PFEKQLTESD VKVSQCRLSL NKSDVQNAVM PLLKKEEDST DGIPVKTYDA NGKEYPMTFI TWSSKFHVLK EGWMKFCTDH SLLAHQDFVT LWAFRNLQTG DLSFVITSRR LEVFEAIKRK RLN // ID A0A061GQ63_THECC Unreviewed; 259 AA. AC A0A061GQ63; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=DNA binding protein, putative isoform 1 {ECO:0000313|EMBL:EOY29249.1}; GN ORFNames=TCM_036843 {ECO:0000313|EMBL:EOY29249.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY29249.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY29249.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY29249.1; -; Genomic_DNA. DR EnsemblPlants; EOY29249; EOY29249; TCM_036843. DR Gramene; EOY29249; EOY29249; TCM_036843. DR OMA; VMANGIK; -. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 91 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 91 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 259 AA; 29710 MW; F3C979EBA0C48CF2 CRC64; MPHFLKPLLP GFHKQLSIPL SFFIKYLKGQ NCERAVLRSC GSRTWSVKLK GRRFEDGWEE FARDHDLYVG DVLVFRHGGN MVFDVMVFDT RSACQREYPL FAMKGKDQKK SSAKRFGKQL EKCTSTSFKH EHPYFVATLK PNNLKVSKLN IPRKFARSNG LTDRFCEMVL VDQQGRSWIA NLRHKKSDGQ VYIGRGWRNL CIANNLKEED SVLLELIGNG KKPIFKLEVA RDSSAKTKPN HPDSKAGDWS CFCEGSSRC // ID A0A061GQQ5_THECC Unreviewed; 1117 AA. AC A0A061GQQ5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_039715 {ECO:0000313|EMBL:EOY32150.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY32150.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY32150.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY32150.1; -; Genomic_DNA. DR EnsemblPlants; EOY32150; EOY32150; TCM_039715. DR Gramene; EOY32150; EOY32150; TCM_039715. DR OMA; LLTKGMM; -. DR Proteomes; UP000026915; Chromosome 9. DR ExpressionAtlas; A0A061GQQ5; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1005 1089 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1117 AA; 123624 MW; A5D200EEB31DA5B7 CRC64; MKMPANGAGA AANVAAPSAA EGGAPEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSAFDKEAL LRSDLSLKAN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYNN QISPGMRFRM MFETEESGTR RYMGTITGVS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR VSIWEIEPVT APFFICPPPF FRSKRPRQPG IPDDESSDLD NLFKRSMPWL GDDICMKESQ APGLSLVQWM NMQQNSMLAN SMQPNFMQSL SGSVMQNFAG ADLSRQMGLS APQMPQPNNL QFNTQRLPQQ VQQLDQLPKL PSTMNPLGSI MQPQQLSDMT QQSRQNLIAQ TLPSSQVQAQ VLQPQTLVQS NNILHQQQSS IQTHQLPRSL PQNLQQQQQQ QQQQHLMGPN QQQNVMQCPL PDPVNQHLQM PDNQIQFQLL QKLQQQQQSL LAQQSVLQQP AQLAQTQEQQ RQVLDASQSF SRSVTTSQVL ELPPMTPILP PQSNVVSQQT SKHNSHANVR FDQPPLQSKL QQQQQQHGML PEIPGHVGHS PAPTANHLFT AVSSVMTGAA VAAQSVVTDD NPSCSTSPST NCPNVLQPMI NSRVHRSTGL GEDMAQSAAT VLNPNALETM SSNANLIKEL QQKSDVKPSF NISKSQNQGL FAPQTYINGA TAQADYLDTS SSTTSVCLSH NDVNLQQNNS LTYNPQTLLL RDTSQDGEDQ ADPRNNSSYG PNMDGQIGMP MNSDSLLTKG MMGLGKDFSN NLSSGGMLTS YENPKDAQQE LSSSMVSQSF GVPDMTFNSI DSTINDSSFL NRGAWAPPPQ FQRMRTYTKV YKRGAVGRSI DITRYSGYDE LKQDLARRFG IEGQLEDRGR IGWKLVYVDH EKDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG NSVLPNQACS SSDNGNT // ID A0A061GRP5_THECC Unreviewed; 1083 AA. AC A0A061GRP5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_039715 {ECO:0000313|EMBL:EOY32151.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY32151.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY32151.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY32151.1; -; Genomic_DNA. DR EnsemblPlants; EOY32151; EOY32151; TCM_039715. DR Gramene; EOY32151; EOY32151; TCM_039715. DR Proteomes; UP000026915; Chromosome 9. DR ExpressionAtlas; A0A061GRP5; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1005 1083 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1083 AA; 120034 MW; B810BD84DA6DBBC7 CRC64; MKMPANGAGA AANVAAPSAA EGGAPEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSAFDKEAL LRSDLSLKAN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYNN QISPGMRFRM MFETEESGTR RYMGTITGVS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR VSIWEIEPVT APFFICPPPF FRSKRPRQPG IPDDESSDLD NLFKRSMPWL GDDICMKESQ APGLSLVQWM NMQQNSMLAN SMQPNFMQSL SGSVMQNFAG ADLSRQMGLS APQMPQPNNL QFNTQRLPQQ VQQLDQLPKL PSTMNPLGSI MQPQQLSDMT QQSRQNLIAQ TLPSSQVQAQ VLQPQTLVQS NNILHQQQSS IQTHQLPRSL PQNLQQQQQQ QQQQHLMGPN QQQNVMQCPL PDPVNQHLQM PDNQIQFQLL QKLQQQQQSL LAQQSVLQQP AQLAQTQEQQ RQVLDASQSF SRSVTTSQVL ELPPMTPILP PQSNVVSQQT SKHNSHANVR FDQPPLQSKL QQQQQQHGML PEIPGHVGHS PAPTANHLFT AVSSVMTGAA VAAQSVVTDD NPSCSTSPST NCPNVLQPMI NSRVHRSTGL GEDMAQSAAT VLNPNALETM SSNANLIKEL QQKSDVKPSF NISKSQNQGL FAPQTYINGA TAQADYLDTS SSTTSVCLSH NDVNLQQNNS LTYNPQTLLL RDTSQDGEDQ ADPRNNSSYG PNMDGQIGMP MNSDSLLTKG MMGLGKDFSN NLSSGGMLTS YENPKDAQQE LSSSMVSQSF GVPDMTFNSI DSTINDSSFL NRGAWAPPPQ FQRMRTYTKV YKRGAVGRSI DITRYSGYDE LKQDLARRFG IEGQLEDRGR IGWKLVYVDH EKDVLLVGDD PCLSQEQDLS HRR // ID A0A061GT76_THECC Unreviewed; 800 AA. AC A0A061GT76; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_041071 {ECO:0000313|EMBL:EOY33060.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY33060.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY33060.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY33060.1; -; Genomic_DNA. DR EnsemblPlants; EOY33060; EOY33060; TCM_041071. DR Gramene; EOY33060; EOY33060; TCM_041071. DR OMA; QSHANPV; -. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 672 754 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 800 AA; 88190 MW; FA3F5600A3171246 CRC64; MEIDLNHAVN EVEKTALCNG DCDKSSACVY CLSSSSSSCS SNSASPPGSS SIYLELWHAC AGPLASLPKK GNVVVYFPQG HLEQVSSASP FSPLEMATFD LPPQIFCKVV NVQLLANKEN DEVYTQVTLL PQPELGGPNL ESKQLDELGV DEGGGGSPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQT RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVAGDAV LFLRGEDGEL RLGIRRAVRP RNGLPDSVLA KQNSYPNVLS SVANAISTKS MFHVFYSPRA SHAEFVVPFQ KYIKGITNPV CTGTRFKMRF EMDDSPDRRC SGVVTGIGDS DPYRWPNSKW RCLMVRWDED IVSDHQERVS PWEIDPSVSL PPLSIQSSPR LKKLRTGLQA APPDTPITGG GGFLDFEESV RSSKVLQGQE NVGFVSPLYG RDTVNCPLDF EMQSPAHQSL ASTGIEKTNI SEFLRARATT YTGFAESNGF PKVLQGQEIC PLRSLTQKVD LNLGVWAKTN LGCNSFNMHQ APKTNCYPLA SEGLRNMYFP YSDFYKAGQD PTMSSYTSTF LRGNVSFNPS SIKTGVIVDS VRKPNPLNEH KPLENIASPA FRKNLRNQQD DCFKGNVAGC KLFGFSLTAE SPTPNSQNSG KRSCTKVHKQ GSLVGRAIDL SRLNGYDDLM TELERLFSME GLLRDTDKGW RVLYTDSEND VMVVGDDPWH EFCDVVSKIH IHTQEEVEKM TIGMASDDTQ SCLEQAPVIM EASKSSSVGQ PDSSPTVIRV // ID A0A061GU80_THECC Unreviewed; 681 AA. AC A0A061GU80; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_041071 {ECO:0000313|EMBL:EOY33061.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY33061.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY33061.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY33061.1; -; Genomic_DNA. DR EnsemblPlants; EOY33061; EOY33061; TCM_041071. DR Gramene; EOY33061; EOY33061; TCM_041071. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 74928 MW; EC1B383D15602CB9 CRC64; MEIDLNHAVN EVEKTALCNG DCDKSSACVY CLSSSSSSCS SNSASPPGSS SIYLELWHAC AGPLASLPKK GNVVVYFPQG HLEQVSSASP FSPLEMATFD LPPQIFCKVV NVQLLANKEN DEVYTQVTLL PQPELGGPNL ESKQLDELGV DEGGGGSPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQT RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVAGDAV LFLRGEDGEL RLGIRRAVRP RNGLPDSVLA KQNSYPNVLS SVANAISTKS MFHVFYSPRA SHAEFVVPFQ KYIKGITNPV CTGTRFKMRF EMDDSPDRRC SGVVTGIGDS DPYRWPNSKW RCLMVRWDED IVSDHQERVS PWEIDPSVSL PPLSIQSSPR LKKLRTGLQA APPDTPITGG GGFLDFEESV RSSKVLQGQE NVGFVSPLYG RDTVNCPLDF EMQSPAHQSL ASTGIEKTNI SEFLRARATT YTGFAESNGF PKVLQGQEIC PLRSLTQKVD LNLGVWAKTN LGCNSFNMHQ APKTNCYPLA SEGLRNMYFP YSDFYKAGQD PTMSSYTSTF LRGNVSFNPS SIKTGVIVDS VRKPNPLNEH KPLENIASPA FRKNLRNQQD DCFKGNVAGC KLFGFSLTAE SPTPNSQNSG SQARQLGWKS H // ID A0A061GV58_THECC Unreviewed; 698 AA. AC A0A061GV58; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_041071 {ECO:0000313|EMBL:EOY33062.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY33062.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY33062.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY33062.1; -; Genomic_DNA. DR EnsemblPlants; EOY33062; EOY33062; TCM_041071. DR Gramene; EOY33062; EOY33062; TCM_041071. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 76750 MW; 07ED01D614E748B7 CRC64; MEIDLNHAVN EVEKTALCNG DCDKSSACVY CLSSSSSSCS SNSASPPGSS SIYLELWHAC AGPLASLPKK GNVVVYFPQG HLEQVSSASP FSPLEMATFD LPPQIFCKVV NVQLLANKEN DEVYTQVTLL PQPELGGPNL ESKQLDELGV DEGGGGSPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQT RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVAGDAV LFLRGEDGEL RLGIRRAVRP RNGLPDSVLA KQNSYPNVLS SVANAISTKS MFHVFYSPRA SHAEFVVPFQ KYIKGITNPV CTGTRFKMRF EMDDSPDRRC SGVVTGIGDS DPYRWPNSKW RCLMVRWDED IVSDHQERVS PWEIDPSVSL PPLSIQSSPR LKKLRTGLQA APPDTPITGG GGFLDFEESV RSSKVLQGQE NVGFVSPLYG RDTVNCPLDF EMQSPAHQSL ASTGIEKTNI SEFLRARATT YTGFAESNGF PKVLQGQEIC PLRSLTQKVD LNLGVWAKTN LGCNSFNMHQ APKTNCYPLA SEGLRNMYFP YSDFYKAGQD PTMSSYTSTF LRGNVSFNPS SIKTGVIVDS VRKPNPLNEH KPLENIASPA FRKNLRNQQD DCFKGNVAGC KLFGFSLTAE SPTPNSQNSG KRSCTKVSYL MVKVNLTLLP IALIVTLT // ID A0A061GY67_THECC Unreviewed; 700 AA. AC A0A061GY67; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_042067 {ECO:0000313|EMBL:EOY34378.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY34378.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY34378.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY34378.1; -; Genomic_DNA. DR EnsemblPlants; EOY34378; EOY34378; TCM_042067. DR Gramene; EOY34378; EOY34378; TCM_042067. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 604 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 76734 MW; 191BEA2CEDCF15C4 CRC64; MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLSSVDFSSS PQIPAFVICR VASVKFLADT ETDEVYAKIM LIPLSNSELD LEEDAVLGGG SNGSDNVEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG EIWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGN GPESGTPGWN SGLGNGNCVG PYGGFSAFLR EDESKIMRNG NLGCGGNLRG KGKVRPEAVL EAVALAAGGQ PFEVIYYPRA STPEFCVKAS GVKAAMRIHW CSGMRFKMAF ETEDSSRISW FMGTVSSVQV ADPIRWPNSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPAIHLSPFS PPRKKLRLPQ HLDLPLDGQF LMPSFSGNPL GPSSPLHCLS DNAPAGIQGA RHAQFGLSLS DLHLNNKLQS GLFLSSFQRF DPHSRISNGI MMARRTNSND NLSCLLTMGS SSQEEKSDNA KRHQFLLFGQ PILTEQQLSR SCSSEAVSQV INGKSSVDGN ADKTKDASDG SGSALENQFS PEKSSPARFL WHPDYRTTEP GLDTGHCKVF LESEDVGRTL DLSVLSSYEE LYKRLANMFG IERSEMLGHV LYRDATGAVK QTGDVPFSAF IKTAKRLTIR MDSGNDTVGR SVMAYWDSNC // ID A0A061GYN8_THECC Unreviewed; 716 AA. AC A0A061GYN8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_042067 {ECO:0000313|EMBL:EOY34377.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY34377.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY34377.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY34377.1; -; Genomic_DNA. DR EnsemblPlants; EOY34377; EOY34377; TCM_042067. DR Gramene; EOY34377; EOY34377; TCM_042067. DR OMA; HQLDHGM; -. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0048589; P:developmental growth; IEA:EnsemblPlants. DR GO; GO:0010154; P:fruit development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0048441; P:petal development; IEA:EnsemblPlants. DR GO; GO:0031540; P:regulation of anthocyanin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009743; P:response to carbohydrate; IEA:EnsemblPlants. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0048442; P:sepal development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 604 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 78275 MW; FBB3F82E1A5B6CF1 CRC64; MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLSSVDFSSS PQIPAFVICR VASVKFLADT ETDEVYAKIM LIPLSNSELD LEEDAVLGGG SNGSDNVEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG EIWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGN GPESGTPGWN SGLGNGNCVG PYGGFSAFLR EDESKIMRNG NLGCGGNLRG KGKVRPEAVL EAVALAAGGQ PFEVIYYPRA STPEFCVKAS GVKAAMRIHW CSGMRFKMAF ETEDSSRISW FMGTVSSVQV ADPIRWPNSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPAIHLSPFS PPRKKLRLPQ HLDLPLDGQF LMPSFSGNPL GPSSPLHCLS DNAPAGIQGA RHAQFGLSLS DLHLNNKLQS GLFLSSFQRF DPHSRISNGI MMARRTNSND NLSCLLTMGS SSQEEKSDNA KRHQFLLFGQ PILTEQQLSR SCSSEAVSQV INGKSSVDGN ADKTKDASDG SGSALENQFS PEKSSPARFL WHPDYRTTEP GLDTGHCKVF LESEDVGRTL DLSVLSSYEE LYKRLANMFG IERSEMLGHV LYRDATGAVK QTGDVPFSAF IKTAKRLTIR MDSGNDTVGR SWLTGIRTAE NGLDGPNKTG PLSIFA // ID A0A061GYW3_THECC Unreviewed; 905 AA. AC A0A061GYW3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=High-level expression of sugar-inducible gene 2, putative isoform 1 {ECO:0000313|EMBL:EOY34706.1}; GN ORFNames=TCM_042290 {ECO:0000313|EMBL:EOY34706.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY34706.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY34706.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY34705.1; -; Genomic_DNA. DR EMBL; CM001887; EOY34706.1; -; Genomic_DNA. DR EnsemblPlants; EOY34705; EOY34705; TCM_042290. DR EnsemblPlants; EOY34706; EOY34706; TCM_042290. DR Gramene; EOY34705; EOY34705; TCM_042290. DR Gramene; EOY34706; EOY34706; TCM_042290. DR OMA; MHSEDAL; -. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 333 434 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 597 647 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 333 434 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 905 AA; 99424 MW; 9448F769AE33D5FC CRC64; MGSKICMNSS CGTASTHEWK KGWPLRSGGF AHLCYRCGSA YEDSVYCDTF HLEESGWREC RLCGKRLHCG CIASKYLLEL LDYGGVGCTS CANSSRLHSV RRIQTHGDEI PNGFSAMPMN NAGSSSVESK AVGDHVDERT LAQLCKIMEA NECNLLPQSQ RGDPNASLGQ HRGEEAMCSV GEVGAGFSNS MQPYVRPPNF AQTDNARPAL DIRDIHDSLS QPSLSMTLGG PSGNPNFVLP FSSGLAEGKE QSKMSSSFQQ GQRSRPILPK PSKNGLATSS EVNKSMVPQA RIARPPVEGR GKNHLLPRYW PRITDQELQQ LSGDLKSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQSEGLPL RIQDVKGKEW TFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI DPGGKLVMGF RKATNSDTQE GQTSSLPNGA HSGETSNSGG IENLSTVSAY SGLFQTPKAG KDPLVNSLSE HLSLADGTIS WGRGQNHGDG ANEDPVQQPA VNAEKKRTRN IGSKSKRLLM HSEDALELRL TWEEAQDLLR PPPSVKPSIV TIEDHEFEEY DEPPVFGKRT IFAAQPSGGQ EQWAQCDDCS KWRRLPVDVL LPPKWTCSDN VWDSSRCSCS ASEEISPKEL ENLLRVGRDL KKRKILESPK LATEREPSGL DALASAAVLG DKMGDVGESS IGATTKHPRH RPGCTCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE AEISQKDNNG HKDESELNDT RLDHSENEGS HSRIQAEVAE TSTGQIDLNC HPNREDLQLE EQGLNMMSLV QAAGMPMENY IKQNGLPSLI SEQQGSLGSH ALSQANKENE RHLSDEEFLA SVGWEHDNRS DEGHKEPSLE RNGLQ // ID A0A061GZ08_THECC Unreviewed; 361 AA. AC A0A061GZ08; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2/B3 transcription factor family protein, putative {ECO:0000313|EMBL:EOY32454.1}; GN ORFNames=TCM_040397 {ECO:0000313|EMBL:EOY32454.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY32454.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY32454.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY32454.1; -; Genomic_DNA. DR EnsemblPlants; EOY32454; EOY32454; TCM_040397. DR Gramene; EOY32454; EOY32454; TCM_040397. DR OMA; GEVNQES; -. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 102 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 102 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41557 MW; 754E64A274C124C6 CRC64; MDEDESSMVS NAKWKVAAAE TSDCGNSNYP LRASKRSRHE TNASLARFKG VVPQQNGHWG AQIYANHQRI WLGTFKSEKE AAMSYDSAAI KLRSVDSHRN FPWAEHNIQE PNFQSLYSTE DVLNMIRAGS YQAKFAEFVN ILSERNGILG SKSVNKNLVH GDIHFSCVQL FQKELTPSDV GKLNRLVIPK KYAVKYFPYI CENDEENVAG VGVEEMELVF YDRLMRTWKF RYCYWRSSQS FVFTRGWNRF VKEKKLKERD IITFHTCECP ALVEKDALNF FLIDVNYNGE QRCINEDKVL NGLESSPQDL QVELELNLGK SFYCRIDNCN SLFNEDKGLS GLKSSHDVEE KRVTLFGVQI N // ID A0A061H092_THECC Unreviewed; 703 AA. AC A0A061H092; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TCM_042067 {ECO:0000313|EMBL:EOY34379.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY34379.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY34379.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001887; EOY34379.1; -; Genomic_DNA. DR EnsemblPlants; EOY34379; EOY34379; TCM_042067. DR Gramene; EOY34379; EOY34379; TCM_042067. DR Proteomes; UP000026915; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 604 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 77318 MW; F41D9D58A38257F1 CRC64; MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLSSVDFSSS PQIPAFVICR VASVKFLADT ETDEVYAKIM LIPLSNSELD LEEDAVLGGG SNGSDNVEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG EIWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGN GPESGTPGWN SGLGNGNCVG PYGGFSAFLR EDESKIMRNG NLGCGGNLRG KGKVRPEAVL EAVALAAGGQ PFEVIYYPRA STPEFCVKAS GVKAAMRIHW CSGMRFKMAF ETEDSSRISW FMGTVSSVQV ADPIRWPNSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPAIHLSPFS PPRKKLRLPQ HLDLPLDGQF LMPSFSGNPL GPSSPLHCLS DNAPAGIQGA RHAQFGLSLS DLHLNNKLQS GLFLSSFQRF DPHSRISNGI MMARRTNSND NLSCLLTMGS SSQEEKSDNA KRHQFLLFGQ PILTEQQLSR SCSSEAVSQV INGKSSVDGN ADKTKDASDG SGSALENQFS PEKSSPARFL WHPDYRTTEP GLDTGHCKVF LESEDVGRTL DLSVLSSYEE LYKRLANMFG IERSEMLGHV LYRDATGAVK QTGDVPFRYQ LEKLHIPFYS FSVLANTEIM SCKTSEFLMF NCS // ID A0A067D935_CITSI Unreviewed; 69 AA. AC A0A067D935; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO39509.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g035552mg {ECO:0000313|EMBL:KDO39509.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO39509.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO39509.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK786524; KDO39509.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO39509.1}. SQ SEQUENCE 69 AA; 8111 MW; 1671CFE52040E8A7 CRC64; YSATVRAKFG DELSSVARLT VPNGYIWRVD IRKDEGKVWL DDGWQEFMEY HLICVGFSVV FQYEKISNF // ID A0A067DC33_CITSI Unreviewed; 450 AA. AC A0A067DC33; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO40398.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g0393862mg {ECO:0000313|EMBL:KDO40398.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO40398.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO40398.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785963; KDO40398.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 331 444 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 331 444 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 450 450 {ECO:0000313|EMBL:KDO40398.1}. SQ SEQUENCE 450 AA; 49931 MW; BFADE2289F379438 CRC64; MGPRICMNPK CRTANTHEWK KGWLLRSGVC ADLCYDCGSA YENFIFCNTF HLEEPGWREC NFCSKRLHCG CRASNSFLEL LDYGGVGCRS CAMSPRLHLI QRDEIPNGFG ALTKKDSDDT QTPMLENRVV GDGTAEGKLT QLCRIMEANE PSFLAPFQRG DTIVSLGQEK REELRLPFVE VGTGFSSPTK LSSRSSKFTK PDGSRSMLDV RDMPESLAQR SSSMSLGVPA GCSNFVPPFS NGAADGREPC KAHPSFQQGQ RSRPILPKPS KTGLTISSET KKSTASQLRI ARPPAEGRGK NHLLPRYWPR ITDQELQQLS GDLNSTIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPHI SQSEGVPLRV QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLRAG DTSMIHSILT RDDKITFSRI DPGGKLVMGF RKAPIPGDMQ // ID A0A067DEF9_CITSI Unreviewed; 313 AA. AC A0A067DEF9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO39935.1}; GN ORFNames=CISIN_1g021378mg {ECO:0000313|EMBL:KDO39935.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO39935.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO39935.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK786209; KDO39935.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 201 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 201 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 36223 MW; 9A3E076C2E3343E1 CRC64; MSSSAAETSS MFYSMILPST IHNKMLRIPL KFVGQFGDEL SSIAKLAVPD GRVWQVGLTK FGRKIWFDQG WQNFVESQSI SAGYFLLFKY EKNSIFRVLI FDMTACEIDY PYEDDMACEM CVEISEEQFK HEAELLSRKR KMEDGLERDE PNAEPDLLVS LRKSGIYITE KYKELYSTEE LERAVYIARA FKATNPKPNP LFMIIWKAND KPCREVYAPA RFAYQYVDED SKSVEVQAPS GRKWSLGIHW RATGGFFLAK GWAGVSDYVH LTEGDICIFE LVRHRDVVFK LHVFHQCSKI TSWREKFSLV SII // ID A0A067DHK6_CITSI Unreviewed; 444 AA. AC A0A067DHK6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO42474.1}; GN ORFNames=CISIN_1g011928mg {ECO:0000313|EMBL:KDO42474.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO42474.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO42474.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785470; KDO42474.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 380 442 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 444 AA; 50857 MW; B317A51FCAE30222 CRC64; MEEQAEPETP LLQTTKIKRK KTAESKMKLT QGAFDSSKES KSRRKRAMID DLYDHAKVNS PVIERAEEVR ANLAPSYPSF WKAMVKSNVS HGFWLHLPMR FCKFNMPKID TVFIVENESG EEYKINYISQ RTALSGGWKA FSDANQLYEG DVLVFHLVEP TRFKAYIVRA NGFGNVNADA KPLNSVPMDD ELEVAPKDHS EKRVKKNKRA KRVKPPPGFH RDNNQSNSLM LLETNNGHVE DQFNNDTEDL GPNKVLPHSE SSNFKEMKSI DDFTILVDGL AIDHELSDQH RSKYYDLCCS QNSFLHDHLL KSINCKLAAE IITQTVNIAE AIRACNLSTS RADYEIWDKT LKGFELLGMN VGFLRARLNR LMSLAFESEE SEVSKRLREV SAEQARAEEE MRSLELKLLR LKETMGRLDS ELESLKVKAE KHELKFQEEA NAPW // ID A0A067DHW7_CITSI Unreviewed; 399 AA. AC A0A067DHW7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO42473.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g036935mg {ECO:0000313|EMBL:KDO42473.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO42473.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO42473.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785470; KDO42473.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 335 383 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO42473.1}. SQ SEQUENCE 399 AA; 45525 MW; 665BD3E3584A20A5 CRC64; EKRKRSTYDN LYDNEEVKNA VMKQANDIQA NLDPQFPSFI KFMLRSHVTG GFWLGLSRKF CIDNLPKQDT MIVLEDESGS EYDTKYLVEK IGLSAGWRGF SIAHKLVEGD ALVFHLVTLS KFKVYIVRSR GSDEVDCALG LLKLETCNQQ VESVSFNYEY HAEKHICEEE DNKCWEPLAQ NIQKDNQMIS CTGLELVSEQ SEDESKDFGS EVLNGLKFCE SVVDFKEVKS FQDFSIVVND LVIDSALSKY LRTKYYELCC SQNSFLHNSV LDGLNCKLIS GMISETINIT DAIRASKLTT PHDNFDTWDK TLKAFKMMGM NVGFLLIRLD QLMNLASTSK RLQEARLERA NAKEEKSALE LKLSEVRERI DRLDSEIEAL GANPNNLDVM FQEMAKAPW // ID A0A067DHX0_CITSI Unreviewed; 346 AA. AC A0A067DHX0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO42478.1}; GN ORFNames=CISIN_1g011928mg {ECO:0000313|EMBL:KDO42478.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO42478.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO42478.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785470; KDO42478.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 73 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 73 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 282 344 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 346 AA; 39616 MW; D17FC15A7073FD3D CRC64; MRFCKFNMPK IDTVFIVENE SGEEYKINYI SQRTALSGGW KAFSDANQLY EGDVLVFHLV EPTRFKAYIV RANGFGNVNA DAKPLNSVPM DDELEVAPKD HSEKRVKKNK RAKRVKPPPG FHRDNNQSNS LMLLETNNGH VEDQFNNDTE DLGPNKVLPH SESSNFKEMK SIDDFTILVD GLAIDHELSD QHRSKYYDLC CSQNSFLHDH LLKSINCKLA AEIITQTVNI AEAIRACNLS TSRADYEIWD KTLKGFELLG MNVGFLRARL NRLMSLAFES EESEVSKRLR EVSAEQARAE EEMRSLELKL LRLKETMGRL DSELESLKVK AEKHELKFQE EANAPW // ID A0A067DIG4_CITSI Unreviewed; 251 AA. AC A0A067DIG4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO38797.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g038793mg {ECO:0000313|EMBL:KDO38797.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO38797.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO38797.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK787420; KDO38797.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 201 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 201 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO38797.1}. SQ SEQUENCE 251 AA; 28523 MW; 27CE3A58C32EC646 CRC64; ETIDAPSETE TDDLNSTEIS DEDDCEGEIE TDDLIFTEIS DKDDDYNLLL WQAFAGPPPS LPKKGDLVVY FPQGHLEYSA PASVSKAPPT FDLKPEIICR VADVRYLVSK KTDKVYTKMT LLPLPEMVGE NFKGKELQDL VVDNKRDGEG STANSTPPLF YKKLRASDQS KKKIVIRAKD AENVFPFLAH LDYKKQINYS VIAKDVHGVA WKFNFVDGKS RRHYLTVGWK YFVRQKNLVP GDTVIFIRYA Y // ID A0A067DLM0_CITSI Unreviewed; 458 AA. AC A0A067DLM0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO42475.1}; GN ORFNames=CISIN_1g011928mg {ECO:0000313|EMBL:KDO42475.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO42475.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO42475.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785470; KDO42475.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 394 456 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 458 AA; 52365 MW; 1A125371C8F5DDF7 CRC64; MEEQAEPETP LLQTTKIKRK KTAESKMKLT QVSEKPLDPD STPELGAFDS SKESKSRRKR AMIDDLYDHA KVNSPVIERA EEVRANLAPS YPSFWKAMVK SNVSHGFWLH LPMRFCKFNM PKIDTVFIVE NESGEEYKIN YISQRTALSG GWKAFSDANQ LYEGDVLVFH LVEPTRFKAY IVRANGFGNV NADAKPLNSV PMDDELEVAP KDHSEKRVKK NKRAKRVKPP PGFHRDNNQS NSLMLLETNN GHVEDQFNND TEDLGPNKVL PHSESSNFKE MKSIDDFTIL VDGLAIDHEL SDQHRSKYYD LCCSQNSFLH DHLLKSINCK LAAEIITQTV NIAEAIRACN LSTSRADYEI WDKTLKGFEL LGMNVGFLRA RLNRLMSLAF ESEESEVSKR LREVSAEQAR AEEEMRSLEL KLLRLKETMG RLDSELESLK VKAEKHELKF QEEANAPW // ID A0A067DLM8_CITSI Unreviewed; 180 AA. AC A0A067DLM8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO39917.1}; GN ORFNames=CISIN_1g045031mg {ECO:0000313|EMBL:KDO39917.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO39917.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO39917.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK786231; KDO39917.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 180 AA; 20278 MW; 29AA4A08C66EE70D CRC64; MEKKWENQGD AAPCFYHIIL DGKVPQIPQE FLKHISKESS DKATLTVQGS ARSWTVTLSE TGIGVFLQDG WLKFLRDNSL GDSEFLLFTY DGNMCFSVQI FNKNGCERIV AASDQIRMNQ EFVGFANGTG KDLPSQKSNK PKSMRKKKNL NCMIKSGFNV QASQTRENQD GRPKMKKPAM // ID A0A067DLP9_CITSI Unreviewed; 211 AA. AC A0A067DLP9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO39937.1}; GN ORFNames=CISIN_1g021378mg {ECO:0000313|EMBL:KDO39937.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO39937.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO39937.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK786209; KDO39937.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 211 AA; 24559 MW; 1EB9864E06FB8584 CRC64; MTACEIDYPY EDDMACEMCV EISEEQFKHE AELLSRKRKM EDGLERDEPN AEPDLLVSLR KSGIYITEKY KELYSTEELE RAVYIARAFK ATNPKPNPLF MIIWKANDKP CREVYAPARF AYQYVDEDSK SVEVQAPSGR KWSLGIHWRA TGGFFLAKGW AGVSDYVHLT EGDICIFELV RHRDVVFKLH VFHQCSKITS WREKFSLVSI I // ID A0A067DMU9_CITSI Unreviewed; 296 AA. AC A0A067DMU9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO39936.1}; GN ORFNames=CISIN_1g021378mg {ECO:0000313|EMBL:KDO39936.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO39936.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO39936.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK786209; KDO39936.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 201 296 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 201 296 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 296 AA; 34243 MW; 13EC195D3EF7208C CRC64; MSSSAAETSS MFYSMILPST IHNKMLRIPL KFVGQFGDEL SSIAKLAVPD GRVWQVGLTK FGRKIWFDQG WQNFVESQSI SAGYFLLFKY EKNSIFRVLI FDMTACEIDY PYEDDMACEM CVEISEEQFK HEAELLSRKR KMEDGLERDE PNAEPDLLVS LRKSGIYITE KYKELYSTEE LERAVYIARA FKATNPKPNP LFMIIWKAND KPCREVYAPA RFAYQYVDED SKSVEVQAPS GRKWSLGIHW RATGGFFLAK GWAGVSDYVH LTEGDICIFE LVRHRDVVFK LHVFHQ // ID A0A067DQ58_CITSI Unreviewed; 715 AA. AC A0A067DQ58; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005075mg {ECO:0000313|EMBL:KDO45139.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO45139.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO45139.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785272; KDO45139.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 687 713 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 617 709 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 715 AA; 79134 MW; 146F6BC51572ACC2 CRC64; MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVNSRV FYFPQGHAEH ACGPVDFRSC RRIPPYILCR VSPIKFMADP ETDEVYAKIK LVPVSTNDPD FDNDDGIAGI HSNETQDKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PEVTSGWNGN CVTPYGGFSA FLREDDNKLM RNGIGNVNGP SSNNGNNLMA KGKVRPESVI EAATLAANRQ PFEVVYYPRA STPEFCVKAS MVKAALQIRW CSGMRFKMAF ETEDSSRISW FMGTISSVQV SDPLYWPDSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKSRLPQ PPDFPLDGQL PMPSFSGSLL GPNSPFGCLP DNTPAGMQGA RHAHYGLSLS DLHLNKLQSG LSPAGFPPFD RAAKPTRASN SPILQKPSMS ENISCLLTMS HSTQPSKKAD DLKTPQLVLF GKPILTEQQM SHSCSGDTVS PVRTGNSSSE GNLDKLTNFS DGSGSALQQQ GLPDRSFCEV FQWYKDNRQE TEPSLETGHC KVFMESEDVG RTLDLSLLGS YDELYKKLAE MFGIENAETL SHLLYRDVTG AVKHIGDEPF RFQLFRLLAI FSLYTIISLK GFNLICFVVA VAVTL // ID A0A067DQJ1_CITSI Unreviewed; 703 AA. AC A0A067DQJ1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005075mg {ECO:0000313|EMBL:KDO45138.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO45138.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO45138.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785272; KDO45138.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 617 697 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 77657 MW; 9A57769658122EA2 CRC64; MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVNSRV FYFPQGHAEH ACGPVDFRSC RRIPPYILCR VSPIKFMADP ETDEVYAKIK LVPVSTNDPD FDNDDGIAGI HSNETQDKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PEVTSGWNGN CVTPYGGFSA FLREDDNKLM RNGIGNVNGP SSNNGNNLMA KGKVRPESVI EAATLAANRQ PFEVVYYPRA STPEFCVKAS MVKAALQIRW CSGMRFKMAF ETEDSSRISW FMGTISSVQV SDPLYWPDSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKSRLPQ PPDFPLDGQL PMPSFSGSLL GPNSPFGCLP DNTPAGMQGA RHAHYGLSLS DLHLNKLQSG LSPAGFPPFD RAAKPTRASN SPILQKPSMS ENISCLLTMS HSTQPSKKAD DLKTPQLVLF GKPILTEQQM SHSCSGDTVS PVRTGNSSSE GNLDKLTNFS DGSGSALQQQ GLPDRSFCEV FQWYKDNRQE TEPSLETGHC KVFMESEDVG RTLDLSLLGS YDELYKKLAE MFGIENAETL SHLLYRDVTG AVKHIGDEPF SDFMKTARRL TILMDSGSDN VGV // ID A0A067DTA1_CITSI Unreviewed; 359 AA. AC A0A067DTA1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO46199.1}; GN ORFNames=CISIN_1g042542mg {ECO:0000313|EMBL:KDO46199.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO46199.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO46199.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785223; KDO46199.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 41392 MW; 22A721D6A4D0B797 CRC64; MAFRRRAEPK MASSMKKTNS LFFQVILAVT IEDKKMKIPQ NFVGRFGDEL SYVATLTNPK GYVVRIGITK KEGKIWFDDG WNEFVQYHSI GVGYFVVFQY RKNSKFQVFV FNTTTFEIQY PSRNMFPPSR QNQATVNSSK SKNGCKMQSK TYRMEELEVN DELDNVNDSI QDIIGTSNSE GSVHAKVHLS ETQCLSVQET DLKIDSTKFK KAKHNLKYEL RADSVDQIKS IALLEDMDTY DCESRMTLEE KQEAINVARF LKPEKPSFLV FLRASNMQLN CVYVPNSFAR KYFNGEECVT IQDSDGRKLA VKVKVSCSKC LLTRWGKFFK KTNVKEGDIL FFEMIQMKNI LLKVSVFNA // ID A0A067DTV8_CITSI Unreviewed; 307 AA. AC A0A067DTV8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO42472.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g036915mg {ECO:0000313|EMBL:KDO42472.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO42472.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO42472.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785470; KDO42472.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 171 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 171 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 48 75 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO42472.1}. SQ SEQUENCE 307 AA; 35576 MW; 69493E162B80CC9E CRC64; FPRRALGNAT VVISLHFFPF FFFFNFGSLE ITTPKDKRKT LKMVESKLTY EECRRQRMEE NKKRMEELKL NVLARSLKTP VSKPSPVKKR VSKPKPASAP VRRSSRVADK PPPNYNEDPF EPFLTRRRLT CRSYQRRNLL NRVYASDEER ASAIDRADEV QSGLDSQYPS FVKPMLQSHV TGGFWLGLPV HFCKEHLPHS DEIITLVDEE ENEFPTKYLA EKTGLSGGWR GFSIDHELVD GDCLVFQLIK PATFKVYIIR VYVSEFNDDN NDVNKKNEKN NMENKEDSSA RITRSAKRTR SSNLFKS // ID A0A067DTW3_CITSI Unreviewed; 416 AA. AC A0A067DTW3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO42477.1}; GN ORFNames=CISIN_1g011928mg {ECO:0000313|EMBL:KDO42477.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO42477.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO42477.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785470; KDO42477.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 352 414 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 416 AA; 47740 MW; F7278452CD0FAFFA CRC64; MFVILIPLKY TISSRRKRAM IDDLYDHAKV NSPVIERAEE VRANLAPSYP SFWKAMVKSN VSHGFWLHLP MRFCKFNMPK IDTVFIVENE SGEEYKINYI SQRTALSGGW KAFSDANQLY EGDVLVFHLV EPTRFKAYIV RANGFGNVNA DAKPLNSVPM DDELEVAPKD HSEKRVKKNK RAKRVKPPPG FHRDNNQSNS LMLLETNNGH VEDQFNNDTE DLGPNKVLPH SESSNFKEMK SIDDFTILVD GLAIDHELSD QHRSKYYDLC CSQNSFLHDH LLKSINCKLA AEIITQTVNI AEAIRACNLS TSRADYEIWD KTLKGFELLG MNVGFLRARL NRLMSLAFES EESEVSKRLR EVSAEQARAE EEMRSLELKL LRLKETMGRL DSELESLKVK AEKHELKFQE EANAPW // ID A0A067DV39_CITSI Unreviewed; 475 AA. AC A0A067DV39; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO42476.1}; GN ORFNames=CISIN_1g011928mg {ECO:0000313|EMBL:KDO42476.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO42476.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO42476.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785470; KDO42476.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 111 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 411 473 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 475 AA; 54333 MW; 268B460BC99E064B CRC64; MEEQAEPETP LLQTTKIKRK KTAESKMKLT QVSEKPLDPD STPELVRESS FIAPHLLEIF VQGAFDSSKE SKSRRKRAMI DDLYDHAKVN SPVIERAEEV RANLAPSYPS FWKAMVKSNV SHGFWLHLPM RFCKFNMPKI DTVFIVENES GEEYKINYIS QRTALSGGWK AFSDANQLYE GDVLVFHLVE PTRFKAYIVR ANGFGNVNAD AKPLNSVPMD DELEVAPKDH SEKRVKKNKR AKRVKPPPGF HRDNNQSNSL MLLETNNGHV EDQFNNDTED LGPNKVLPHS ESSNFKEMKS IDDFTILVDG LAIDHELSDQ HRSKYYDLCC SQNSFLHDHL LKSINCKLAA EIITQTVNIA EAIRACNLST SRADYEIWDK TLKGFELLGM NVGFLRARLN RLMSLAFESE ESEVSKRLRE VSAEQARAEE EMRSLELKLL RLKETMGRLD SELESLKVKA EKHELKFQEE ANAPW // ID A0A067E0E6_CITSI Unreviewed; 694 AA. AC A0A067E0E6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005482mg {ECO:0000313|EMBL:KDO44682.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO44682.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO44682.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785291; KDO44682.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 688 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 76078 MW; C90A716D8D507EAE CRC64; MITVMDSAKD AMKKNPTGES CLDSQLWHAC AGGMVQMPQI NSKVFYFPQG HLEHAKGNVE LPNFNIPSMI PCRVTAIKFM ADAETDEVYA RIRLIALKSN CFDDFEDVGF DGNGGISNES SEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA EPPVQTILAK DVHGEVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKK GGIGGGSDYS VGWNSGGGNC GFPFGGYSGY MREDENKSSR RNSSSDLRGR VRAESVTEAA ALAANGQPFE VVYYPRASTP EFVVKASAVR AAMQIQWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNIPA IHLSPFSPAR KKLRLPEHSD FSLINQLPTP SFTRNPLVTS SPFCCISDNI PAGIQGARHA QYGLSSSDLH FNKLQSSLFP LGFQQLEHTT RPARVSSANF MSETGNSKNI SCLLTMGNPT QSFKDNIEVK TPHIILFGQL ILPQQNSSQS CSGDTIVNSL SDGNPEKTAI SSDGSGSAVH QNGPLENSSD EGSPWCKDHK KSDLGLEMGH CKVFMESEDV GRTLDLSVLG SYEELYGKLA NMFGIESAEM FSNVLYRDAA GSVKHTGDEP FSEFLKTARR LTILTDSGSD SVGR // ID A0A067E2E3_CITSI Unreviewed; 156 AA. AC A0A067E2E3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO49399.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g0315851mg {ECO:0000313|EMBL:KDO49399.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO49399.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO49399.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785110; KDO49399.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO49399.1}. SQ SEQUENCE 156 AA; 17759 MW; 8B7E0A56097B4FC9 CRC64; IGAVGSCSGK GVEDAQLKDP QFQTASKPTV IEVQGDEFWP LSGKPYFNAI ISKSQLKPMN LMILPAEMRR ILPSKTIPAF LVYKGKEWEM VYLGEDFQKR NKRFGSEWKT FAIDNKLKVG DACVFELMEC RNDCLKFRVQ ILRGDIPSKF EDNTND // ID A0A067E806_CITSI Unreviewed; 300 AA. AC A0A067E806; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO47367.1}; GN ORFNames=CISIN_1g041864mg {ECO:0000313|EMBL:KDO47367.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO47367.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO47367.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785179; KDO47367.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 33316 MW; 344FF7637FBEB9C7 CRC64; MMDQGVVVHE KNEARAFMAG VEGVTAKGDK STRFGSDPIR ASGSSLDLVA AVTSALGANI NRKKRMARQR RSSSFNLLAF SSPSSSSTSH VSPPLALPAR EIDPGRLRFL FQKELKNSDV SSLRRMILPK KAAEAHLPVL ESKEGIFISM EDLDGLHVWT FKYRFWPNNN SRMYVLENTG DFVNAHGLQL GDFIIVYKDD QNQNYVIQAK KASDQDVYTN LTSDSVNDIL LNDYEVNRSG SFYVNHPMAG EDTGMSFIYD TTTFSNDSPL DFLGGSLTSY SRIGQESFGS VENISLDDFY // ID A0A067E8A2_CITSI Unreviewed; 560 AA. AC A0A067E8A2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004792mg {ECO:0000313|EMBL:KDO51288.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO51288.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO51288.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785059; KDO51288.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 560 AA; 62922 MW; BB725420223915AF CRC64; MLMSVFHPWL DMSRQPPTQE LAAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA VSTGTMFTVY YKPRTSPSEF IVPYDQYMES IKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GIEDADPQRW RDSKWRCLKV RWDETSTIPR PERVSLWKIE PALAPPALNS LPMPRPKRPR SNMLPSSPDS SVLTREGSSK LNVDPSSATG FSRVLQGQEF STLRGNFAER ESNESDTAEK SVVWPPSLDD EKIDVVSASR RYGSENWVPP GRHEPVYTDL LSGFGANADP SHGFSSPFAD AVPVRKSVLD QEGKFNLVAR PWSLMPSGPS LKMPESNAKV PVQGGDVNYQ VRGNVRYGGF GDYPMLNGNR VEHSHGNWLM PPLPPSNFEN SAHSRELMPK SAMVQDQEAG KSKDCKLFGI PLFSNHVMPE PVVSHRNTMN EPAGNLDQQF RAFESDQKSD HSKSSKLADD NQVFNEHEKP SQPSQTHTKD VRSKTQCGST RSCTKVPLPH // ID A0A067EAH5_CITSI Unreviewed; 241 AA. AC A0A067EAH5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52169.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g038266mg {ECO:0000313|EMBL:KDO52169.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52169.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52169.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52169.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO52169.1}. SQ SEQUENCE 241 AA; 27586 MW; B36955267FB5B709 CRC64; KIPKAFVGRF GYEELSSDAT LKTPNGCVWQ VGVTKDKGKI WLDDGWHHFV KDHSICVAYF LVFKYAKNST FDVLIFDMTA CEIDYPYHRG QPNKEEQNSI HDDEMQCENS TKKLGFRASC KNQMHHSQGS LHYKRLLNGT AGNFSRPSSA VQDDHQTEFV DGQALSALLE EMGISISRSC LSLEAEERHR VITAARLFEP RNPSFMVIVR GNERRKAYLF IPIKFVNNYL CEVPKFIKVQ A // ID A0A067EAJ2_CITSI Unreviewed; 375 AA. AC A0A067EAJ2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52174.1}; GN ORFNames=CISIN_1g017237mg {ECO:0000313|EMBL:KDO52174.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52174.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52174.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52174.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 42696 MW; A942B6C78E5618C3 CRC64; MSEQQTTHGE AMSQPLAPYL PEEENQKRSC IFYKLIVPSI LHDKKLRIPD KFVKKFGDEL STVAKLTIPS GRLWLVELRK LNKKLWFDIG WHEFVEHCSI RAGYFMIFRY QGNSDFNVYI YDLAKSEIEY PFNTCSSLEE EPSGNKQCSV PIDKDKGEDN SFGISKPSSS PCPVLSPSTI NVEDEGAYYK KNKNSTSGVK LKYLHLAEEV HNQEATFQSP QDKGIIQFKS NVTNKSDEVG LRGRALTSEE KKSALRAAEI FKSNNPFFKV VLRPSYVYKS LLLHIPSIFA RTYLNGIKGD VTLTGPNGKQ WRVRCISQNG KAKFGQGWSE FVWDNNLDES DVCVFELVKT DDVTLKVTIF RVLQDARSEE CQPSK // ID A0A067EAX0_CITSI Unreviewed; 335 AA. AC A0A067EAX0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52173.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g041048mg {ECO:0000313|EMBL:KDO52173.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52173.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52173.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52173.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 233 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 233 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO52173.1}. SQ SEQUENCE 335 AA; 38809 MW; C33A582F1C40FB24 CRC64; EGKRSCIFYK LIVPSILQDK KLRIPDKFVQ KFGDELSSIA KFTIPSGRMW FVELKKCNKQ LWFDIGWHEF IEHCSIHSGY FLIFKYQGNS NFNVYIFDLA ISEIEYPSLE EPSDSKQCHV PIEKDKEKNS SLRILPPLRA PCPDPFSPAT KVLDEGVCYK CNKDSTSGVK IEYLHIPKDE HNQETAFHCP QDKGIQFKNT SDEVGLRWRA VTTEEKKRTV HAAEMYKSSN PLFRVILRPS YVYRTLLLHV PTSFARKYLN GIKGYITIID SNGKQWPVRC IFKNGGAKFS KGWPEFVWEN NLDESDVCVF ELIKSNDVTL KATIFRVLED ARPVY // ID A0A067EBP0_CITSI Unreviewed; 730 AA. AC A0A067EBP0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004792mg {ECO:0000313|EMBL:KDO51285.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO51285.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO51285.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785059; KDO51285.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 730 AA; 81378 MW; C7B438BB0596FF11 CRC64; MAAAASSSEV SMKSCNETGR IPMEGQNSNS TTSGVKRVGD PEMALYTELW HACAGPLVTV PREGERVYYF PQGHIEQVEA STNQVADQQM PVYDLPSKIL CRVINVQLKA EPDTDEVFAQ VTLLPESNQD ENAVEKEPPP PPPPRFHVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPTQE LAAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA VSTGTMFTVY YKPRTSPSEF IVPYDQYMES IKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GIEDADPQRW RDSKWRCLKV RWDETSTIPR PERVSLWKIE PALAPPALNS LPMPRPKRPR SNMLPSSPDS SVLTREGSSK LNVDPSSATG FSRVLQGQEF STLRGNFAER ESNESDTAEK SVVWPPSLDD EKIDVVSASR RYGSENWVPP GRHEPVYTDL LSGFGANADP SHGFSSPFAD AVPVRKSVLD QEGKFNLVAR PWSLMPSGPS LKMPESNAKV PVQGGDVNYQ VRGNVRYGGF GDYPMLNGNR VEHSHGNWLM PPLPPSNFEN SAHSRELMPK SAMVQDQEAG KSKDCKLFGI PLFSNHVMPE PVVSHRNTMN EPAGNLDQQF RAFESDQKSD HSKSSKLADD NQVFNEHEKP SQPSQTHTKD VRSKTQCGST RSCTKVPLPH // ID A0A067EDH6_CITSI Unreviewed; 241 AA. AC A0A067EDH6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO48976.1}; GN ORFNames=CISIN_1g0262261mg {ECO:0000313|EMBL:KDO48976.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO48976.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO48976.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785126; KDO48974.1; -; Genomic_DNA. DR EMBL; KK785126; KDO48975.1; -; Genomic_DNA. DR EMBL; KK785126; KDO48976.1; -; Genomic_DNA. DR RefSeq; XP_006487853.1; XM_006487790.2. DR GeneID; 102629216; -. DR KEGG; cit:102629216; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 46 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 46 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 28441 MW; 7323644878A64681 CRC64; MKNGRRFSFG DGWQDFVASN SISVGYFLVF RYEKNSTFQV LIHDMTACEI DYPYSDEESD EWSSEFEDDM ESEECVEISK ELFSSKCRCQ RQKKSKVKGL FRNLLENMGM YISEKSEDFT VEESERAIKI VRSLKLKDPS FMVIFRKREK PCREVYVPAS FAYRFVNQNV KSIKLRGSNA ELNLPRSDKS VRIWWRDNGG FYLTRGWMKF STHKNLKDGD ICIFKLIDRK DVLLELSVFR A // ID A0A067EE47_CITSI Unreviewed; 321 AA. AC A0A067EE47; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52155.1}; GN ORFNames=CISIN_1g020807mg {ECO:0000313|EMBL:KDO52155.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52155.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52155.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52155.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 36477 MW; 0003E15029EEEE25 CRC64; MAKCIPGFFK VYLPEKSSNR LHIPDAFIAY LSPLKPEKVM LINHIGEYWH VNVAYCDKGV FFLDGWQKFV NDNSLETADI LVLKYDGDCW FNVKIMGKSG IEKTESYKED LWVEDEEEET EEEEIGGEEA EEDCKDDSVF EVGDNDSAAD KDYIEEEDDD DEMTAITSCR GRINIGKSKK RAVAKAGGSK AVYDINLLEV DVGDYGLYPN PYFVSKAWAG TRKNYLHVPS HVLKDLGLKL AKKITILDER GYSFHGQLDI WKDGRQGIKG WSAFCRAKKL KKDDICICEF THSRKMQNTI KVHIVQGVGS QSKAKRSRSK N // ID A0A067EE89_CITSI Unreviewed; 180 AA. AC A0A067EE89; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52170.1}; GN ORFNames=CISIN_1g043961mg {ECO:0000313|EMBL:KDO52170.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52170.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52170.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52170.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 180 AA; 21154 MW; D3B869595CC33156 CRC64; MAESITAEPF RFFKIIEETL QDKKLRIPGD FVKKFGDELC DVATLRVPNG CVWKVGLTRE GRKIWFNDGW HDFVKNHSIF NDYFLVFEYA KNSTFDVLIF DKTACEIEYT CAELENEKQN DGKKSKLREV AYEDEYKFVA VLEEMGICIS GAYKFLSVEE RQRIIYASRL FRLENPSFFS // ID A0A067EE91_CITSI Unreviewed; 354 AA. AC A0A067EE91; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52175.1}; GN ORFNames=CISIN_1g016655mg {ECO:0000313|EMBL:KDO52175.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52175.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52175.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52175.1; -; Genomic_DNA. DR RefSeq; XP_006479395.1; XM_006479332.2. DR GeneID; 102626309; -. DR KEGG; cit:102626309; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40944 MW; 5E4E85190E4FBD51 CRC64; MPRPYFHKLI LASTIRDKRL RIPENFVRNF KDDLSAAATL IVPNGMVSRV GLRRLDNKVW FYDGWQEFME RYFIRIGYFL VFRYEGNSAF NVYIFNLPSS EINYQPNALS NFEVPNHSKQ YHIFAEMEDD DSEHVDQPTV NKTFNPPSFQ NLLNSSKLSN SINGAGEANL QRLKVKLYSQ DGETPKLKKP GRKRKIDPNV QASSAQEVHD GEMQFRFYES ASARKRTVTA EERERAINAA KAFEPSNPFC RVVLRPSYLY KGCIMYLPSC FAEKHLNGVC GFIKLQLSDG KQWPVRCLYR GGRAKFSQGW YEFTVENRLG EGDVCVFEVL RAREFVLKVT VFRVSESAGF MSRH // ID A0A067EFV6_CITSI Unreviewed; 233 AA. AC A0A067EFV6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO53973.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g044463mg {ECO:0000313|EMBL:KDO53973.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO53973.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO53973.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785003; KDO53973.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 233 233 {ECO:0000313|EMBL:KDO53973.1}. SQ SEQUENCE 233 AA; 27351 MW; C3412F8AA91394DE CRC64; MTERAAATWL FEQQWRKRLN PGADVSSPHF FKIIFPFVLA EKKLRIPRDF VKKFGHELSN GAQLTVPDGS VWQVALTRKG KDIWFHYGWE DFVESYSISA GYFLFFSYEK NSTFHIIIFN LDACEVDYLY VGEESMKDEQ NSDPENEKSV EHVEQQSRKR KMEEVAEMDE PNSDNNFNLS VVLKKMGIYV TPRYRRFSAE ESKRAISFAR IVQPKNSSFM VILEQHFKSC RDV // ID A0A067EJA4_CITSI Unreviewed; 641 AA. AC A0A067EJA4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004792mg {ECO:0000313|EMBL:KDO51287.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO51287.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO51287.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785059; KDO51287.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 641 AA; 71778 MW; 67B99F3042D308AA CRC64; MPVYDLPSKI LCRVINVQLK AEPDTDEVFA QVTLLPESNQ DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELAAKDLHGN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AVSTGTMFTV YYKPRTSPSE FIVPYDQYME SIKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDADPQR WRDSKWRCLK VRWDETSTIP RPERVSLWKI EPALAPPALN SLPMPRPKRP RSNMLPSSPD SSVLTREGSS KLNVDPSSAT GFSRVLQGQE FSTLRGNFAE RESNESDTAE KSVVWPPSLD DEKIDVVSAS RRYGSENWVP PGRHEPVYTD LLSGFGANAD PSHGFSSPFA DAVPVRKSVL DQEGKFNLVA RPWSLMPSGP SLKMPESNAK VPVQGGDVNY QVRGNVRYGG FGDYPMLNGN RVEHSHGNWL MPPLPPSNFE NSAHSRELMP KSAMVQDQEA GKSKDCKLFG IPLFSNHVMP EPVVSHRNTM NEPAGNLDQQ FRAFESDQKS DHSKSSKLAD DNQVFNEHEK PSQPSQTHTK DVRSKTQCGS TRSCTKVPLP H // ID A0A067EK49_CITSI Unreviewed; 688 AA. AC A0A067EK49; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004792mg {ECO:0000313|EMBL:KDO51286.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO51286.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO51286.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785059; KDO51286.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 688 AA; 77094 MW; ADF4D7612DA1F75C CRC64; MALYTELWHA CAGPLVTVPR EGERVYYFPQ GHIEQVEAST NQVADQQMPV YDLPSKILCR VINVQLKAEP DTDEVFAQVT LLPESNQDEN AVEKEPPPPP PPRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELA AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAVS TGTMFTVYYK PRTSPSEFIV PYDQYMESIK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDADPQRWRD SKWRCLKVRW DETSTIPRPE RVSLWKIEPA LAPPALNSLP MPRPKRPRSN MLPSSPDSSV LTREGSSKLN VDPSSATGFS RVLQGQEFST LRGNFAERES NESDTAEKSV VWPPSLDDEK IDVVSASRRY GSENWVPPGR HEPVYTDLLS GFGANADPSH GFSSPFADAV PVRKSVLDQE GKFNLVARPW SLMPSGPSLK MPESNAKVPV QGGDVNYQVR GNVRYGGFGD YPMLNGNRVE HSHGNWLMPP LPPSNFENSA HSRELMPKSA MVQDQEAGKS KDCKLFGIPL FSNHVMPEPV VSHRNTMNEP AGNLDQQFRA FESDQKSDHS KSSKLADDNQ VFNEHEKPSQ PSQTHTKDVR SKTQCGSTRS CTKVPLPH // ID A0A067EKN7_CITSI Unreviewed; 127 AA. AC A0A067EKN7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO55709.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g048225mg {ECO:0000313|EMBL:KDO55709.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO55709.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO55709.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784981; KDO55709.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO55709.1}. SQ SEQUENCE 127 AA; 14757 MW; 9FEEF3F0F297C734 CRC64; PILPSLPEIP PRFVKARLLS TLRDQKLRIL NKIVRKISHE LSDMVHIIVP NGYVWQVKLN KEGRNVRFDD GWQDFVEAYS ISVGSLVLFE YESNSTFQAH IYDETAWEIN YPSSDKESHT SGEEFHP // ID A0A067EKY7_CITSI Unreviewed; 127 AA. AC A0A067EKY7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO55708.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g040084mg {ECO:0000313|EMBL:KDO55708.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO55708.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO55708.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784981; KDO55708.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO55708.1}. SQ SEQUENCE 127 AA; 14605 MW; 87B68F5939722AF5 CRC64; PISPSSPEIP PRFVKAVLPS TLRDQKPRIP NKIVRKFSHE LSDVAHITIP NGYVWQVKLK KEGRKVWFDD GWQDFVEAYS TFVGSLVLFE YESNSTFQAH IYDETACEIN YPSSNEESHT NGEESHH // ID A0A067ELU7_CITSI Unreviewed; 243 AA. AC A0A067ELU7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52157.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g042153mg {ECO:0000313|EMBL:KDO52157.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52157.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52157.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52157.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO52157.1}. SQ SEQUENCE 243 AA; 28682 MW; 58DDFB12CC539C9F CRC64; RIPKNFVKNF GCELSKAATL IDPNGRISEV RIRKNGKTIW FHHGWYDFIK YYSISAGYLV VFKYVKNSTF HVLIFDMTAC EINYPSKSEE SKNEEFVEKE EPYEDNECDL QDFLEEMGIC IARKHRIVTT EQSKRAVKFV ESLELKNPSF MVILQQSDIN HHRVYVPVKF AKEFFCRDTK SIKILVSNEN EKPHQINWIQ KGGFVFTMVR IMKSKKLKEG DICIFELIRK NKFLLKLYVL KGK // ID A0A067EML3_CITSI Unreviewed; 349 AA. AC A0A067EML3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52156.1}; GN ORFNames=CISIN_1g018886mg {ECO:0000313|EMBL:KDO52156.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52156.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52156.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52156.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 40437 MW; B839ACF42549DC38 CRC64; MPSSMKKTYP HFIDVILDST IEDKKMKIPQ NFVGRFGDEL SNVATLTNPE GYVMRVGITR KDGNIWFDGG WNEFVEDHSI DVGYFVLFQY RKNSKFRVFI YNTTTCEIQY PSRNTFPPPR QNQATFDGSK SKNGCEMRGK TYRMEEVKVK EESDNVNDSM QDVIGTCNSE GSVHAKIHLS ETQCSSVQET DLKIDSTKFK KAKHNLKDEL RADSVDRVKL FALLEDMDIH ICESRMTLEE RQEAINVARL LKPEKPSFLV FLRASNMQLN YVYVPTSFAR KYLNGEECVT VQDSDGRKLA VKVKQSRRKY LLTRWGKFFK KTNVKEGDIL FFEMIQMKKI LLKVSVFHA // ID A0A067EMN2_CITSI Unreviewed; 332 AA. AC A0A067EMN2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO56444.1}; GN ORFNames=CISIN_1g046898mg {ECO:0000313|EMBL:KDO56444.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO56444.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO56444.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784973; KDO56444.1; -; Genomic_DNA. DR RefSeq; XP_006492722.1; XM_006492659.1. DR GeneID; 102629823; -. DR KEGG; cit:102629823; -. DR KO; K09287; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 103 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 103 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 38150 MW; DAE76915CC3074DF CRC64; MEEDASSMVS NAKTNANNTE ASDSNNSTSG LQPAPKRMRH DKNVSLVKFK GVVPQQNGHW GAQIYANHQR IWLGTFKSER EAAMAYDSAA IKIRGGDSHR NFPWTDTNNQ EPNFQNQYST EAVLNMIRDG TYQPKFADYL RVQSQREDNN SNASLNQIMV HGDEQFAYRQ LFQKELTPSD VGKLNRLVIP KKYAVKYFPF ISENAGENAI NGGVDDMELV FFDKLMRPWK FRYCFWRSSQ SYVFTRGWNR FVKEKKLKEK DIITFYACEC ANGAKEGQNF FLVDVIHCEG QNCNVVKKPV QLEQITGKIF SYNEKESNSE EKGFKLFGVQ IN // ID A0A067EMQ5_CITSI Unreviewed; 309 AA. AC A0A067EMQ5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52171.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g0434992mg {ECO:0000313|EMBL:KDO52171.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52171.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52171.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52171.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 214 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO52171.1}. SQ SEQUENCE 309 AA; 35368 MW; 2D45869E3A970239 CRC64; RIPRKFVKRF GDELSAVATL NVPNGRVWQV GLRKDGRKIW LQDGWDNFAE YHSIAVGYFL VFKYAKNSTF DVLVFDMTAC EIDYPYDYEE TESEEGDEME TENSVEILSF TKMNTPPVQE NQVKPGSKPE KKKIGGIKLE TATNSREKKR CPTHGNEHGK LKKAAYHEVE TDSSDGDQVF EEMGIFMSEG HRYLSVEERQ SLVTAVRLFK PQNPSFVDIL RSKKRYSYMY VPSKFSKKHL IRGTRSIKLQ DSDGKEWPAQ LTWSSGCGIK GGWPAFSKYK NLKQGHVCVF ELIKAKDILL KVSIHASSE // ID A0A067EMQ9_CITSI Unreviewed; 385 AA. AC A0A067EMQ9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO52176.1}; GN ORFNames=CISIN_1g016655mg {ECO:0000313|EMBL:KDO52176.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO52176.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO52176.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785039; KDO52176.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 385 AA; 44553 MW; 938E6F47B996773E CRC64; MPRPYFHKLI LASTIRDKRL RIPENFVRNF KDDLSAAATL IVPNGMVSRV GLRRLDNKVW FYDGWQEFME RYFIRIGYFL VFRYEGNSAF NVYIFNLPSS EINYQPNALS NFEVPNHSKQ YHIFAEMEDD DSEHVDQPTV NKTFNPPSFQ NLLNSSKLSN SINGAGEANL QRLKVKLYSQ DGETPKLKKP GRKRKIDPNV QASSAQEVHD GEMQFRFYES ASARKRTVTA EERERAINAA KAFEPSNPFC RVVLRPSYLY KGCIMVSCRI SITLHCFSVS HDNMLDVRCI YFLLLQYLPS CFAEKHLNGV CGFIKLQLSD GKQWPVRCLY RGGRAKFSQG WYEFTVENRL GEGDVCVFEV LRAREFVLKV TVFRVSESAG FMSRH // ID A0A067EQ72_CITSI Unreviewed; 784 AA. AC A0A067EQ72; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57329.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57329.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57329.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57329.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 748 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 784 AA; 87472 MW; 1633BBAD6857D4CB CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFICDSMHI GLLAAAAHAA ATNSCFTVFF NPRASPSEFV IPLTKYVKAV FHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW SNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS LFPLRLKRPW HPSTSSFNDN RDETASGLNW LRGGTGEQGL TTLNFQSLGM FPWMQQRVEP SFLGNDHNQQ YQAMLAAGMQ SGDPVRQQFM QLQQPFQYLQ QSGSQNPLQL KQQQHLLQQL NSQAEDRAQQ QQQPQQHMYH DALQIRTDEL LQRQQSNLPS PSFSKANFMD SSTEISVSIS PMQNMLGSLP EGSGNLLNFS GAGPSMLRQQ FPQQSLGSKY EPSQVRDFVH SMSLPSSYNG KDAAVGTENC NTDSQNSVVF GVHIDSSGLL LPTTVSSFTT SVDPGVSSMP LGDSGFHNSM YGCMQDSSEL LHNVGQIDQL TPTRTFVKVY KSGSVGRSLD ISRFSSYNEL REELGQMFGI EGKFEDPLRS GWQLVFVDRE NDVLLLGDDP WEAFVSNVWY IKILSPEDVQ KMGEQGVESF SPSSGQRANS RGNCGRDPVG SLEY // ID A0A067EQ75_CITSI Unreviewed; 773 AA. AC A0A067EQ75; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57334.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57334.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57334.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57334.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 691 773 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 773 AA; 86464 MW; 444AB95C966B5009 CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPS TSSFNDNRDE TASGLNWLRG GTGEQGLTTL NFQSLGMFPW MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ QHLLQQLNSQ AEDRAQQQQQ PQQHMYHDAL QIRTDELLQR QQSNLPSPSF SKANFMDSST EISVSISPMQ NMLGSLPEGS GNLLNFSGAG PSMLRQQFPQ QSLGSKYEPS QVRDFVHSMS LPSSYNGKDA AVGTENCNTD SQNSVVFGVH IDSSGLLLPT TVSSFTTSVD PGVSSMPLGD SGFHNSMYGC MQDSSELLHN VGQIDQLTPT RTFVKVYKSG SVGRSLDISR FSSYNELREE LGQMFGIEGK FEDPLRSGWQ LVFVDRENDV LLLGDDPWEF RSSRPSDESP LSY // ID A0A067EQF2_CITSI Unreviewed; 778 AA. AC A0A067EQF2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57328.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57328.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57328.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57328.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 658 742 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 94 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 778 AA; 86836 MW; 23B41F5B09629643 CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQADVETDEV YAQMTLQPLS PEEQKDTFVP IELGIPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PSLDFSLQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRAIRPPT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF TVFFNPRASP SEFVIPLTKY VKAVFHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWSNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHPSTSS FNDNRDETAS GLNWLRGGTG EQGLTTLNFQ SLGMFPWMQQ RVEPSFLGND HNQQYQAMLA AGMQSGDPVR QQFMQLQQPF QYLQQSGSQN PLQLKQQQHL LQQLNSQAED RAQQQQQPQQ HMYHDALQIR TDELLQRQQS NLPSPSFSKA NFMDSSTEIS VSISPMQNML GSLPEGSGNL LNFSGAGPSM LRQQFPQQSL GSKYEPSQVR DFVHSMSLPS SYNGKDAAVG TENCNTDSQN SVVFGVHIDS SGLLLPTTVS SFTTSVDPGV SSMPLGDSGF HNSMYGCMQD SSELLHNVGQ IDQLTPTRTF VKVYKSGSVG RSLDISRFSS YNELREELGQ MFGIEGKFED PLRSGWQLVF VDRENDVLLL GDDPWEAFVS NVWYIKILSP EDVQKMGEQG VESFSPSSGQ RANSRGNCGR DPVGSLEY // ID A0A067EQF6_CITSI Unreviewed; 766 AA. AC A0A067EQF6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57333.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57333.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57333.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57333.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 691 766 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 766 AA; 85586 MW; 8E5FE0CA64E5C9EC CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPS TSSFNDNRDE TASGLNWLRG GTGEQGLTTL NFQSLGMFPW MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ QHLLQQLNSQ AEDRAQQQQQ PQQHMYHDAL QIRTDELLQR QQSNLPSPSF SKANFMDSST EISVSISPMQ NMLGSLPEGS GNLLNFSGAG PSMLRQQFPQ QSLGSKYEPS QVRDFVHSMS LPSSYNGKDA AVGTENCNTD SQNSVVFGVH IDSSGLLLPT TVSSFTTSVD PGVSSMPLGD SGFHNSMYGC MQDSSELLHN VGQIDQLTPT RTFVKVYKSG SVGRSLDISR FSSYNELREE LGQMFGIEGK FEDPLRSGWQ LVFVDRENDV LLLGDDPWEI VLPIPV // ID A0A067ER32_CITSI Unreviewed; 283 AA. AC A0A067ER32; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO57634.1}; GN ORFNames=CISIN_1g038275mg {ECO:0000313|EMBL:KDO57634.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57634.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57634.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784959; KDO57634.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32933 MW; ED5BB6639AD39481 CRC64; MQRIPPKFVR DFGHELSEDA TLAVPNGRPW RVRLKRDEGG VWFDDGWYDF AKYYSVSAGY ISIFKYGKNS NFRVLIFDFT ACEINYKREE GSKLDKRSRQ SAANYSFENF KAKHKYRECE PQIKKCRKEE LVEKNESDDG GGGDIEYNLW DLLTEMGICI SKKHRAFSTE ESKRVLKIAR SLNLKYPTSL IILPSSSITH NRVYVPATFA KHFASRDAKS MEVRVSNERH KFMNMNVCWR ENGGFALSMT ELVEDENLKE GDIFIFELIS KRVAVLNLSI YHL // ID A0A067ESG3_CITSI Unreviewed; 116 AA. AC A0A067ESG3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO53846.1}; GN ORFNames=CISIN_1g040988mg {ECO:0000313|EMBL:KDO53846.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO53846.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO53846.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK785006; KDO53846.1; -; Genomic_DNA. DR RefSeq; XP_015383361.1; XM_015527875.1. DR GeneID; 107175949; -. DR KEGG; cit:107175949; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 116 AA; 13069 MW; 8F75AC3FD2173DD0 CRC64; MEVYKKILTE TDVSTRLAVE SNTIDEFFPA FEAGQDSQEL VVEDENGERW RFGLFILLGP YGKPTISAGW RRFVMSRQAK VGDQVVFSKE RVAASGSASS YKIRVVKQVK LFKSAI // ID A0A067ETX4_CITSI Unreviewed; 811 AA. AC A0A067ETX4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57330.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57330.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57330.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57330.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 691 775 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 90515 MW; CC3AA098C92E8907 CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPS TSSFNDNRDE TASGLNWLRG GTGEQGLTTL NFQSLGMFPW MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ QHLLQQLNSQ AEDRAQQQQQ PQQHMYHDAL QIRTDELLQR QQSNLPSPSF SKANFMDSST EISVSISPMQ NMLGSLPEGS GNLLNFSGAG PSMLRQQFPQ QSLGSKYEPS QVRDFVHSMS LPSSYNGKDA AVGTENCNTD SQNSVVFGVH IDSSGLLLPT TVSSFTTSVD PGVSSMPLGD SGFHNSMYGC MQDSSELLHN VGQIDQLTPT RTFVKVYKSG SVGRSLDISR FSSYNELREE LGQMFGIEGK FEDPLRSGWQ LVFVDRENDV LLLGDDPWEA FVSNVWYIKI LSPEDVQKMG EQGVESFSPS SGQRANSRGN CGRDPVGSLE Y // ID A0A067ETX7_CITSI Unreviewed; 797 AA. AC A0A067ETX7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57335.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57335.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57335.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57335.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 797 AA; 89159 MW; EAD435AC774334B0 CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPS TSSFNDNRDE TASGLNWLRG GTGEQGLTTL NFQSLGMFPW MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ QVIQQSIPHN LLQAQSQILT ENIPQHLLQQ LNSQAEDRAQ QQQQPQQHMY HDALQIRTDE LLQRQQSNLP SPSFSKANFM DSSTEISVSI SPMQNMLGSL PEGSGNLLNF SGAGPSMLRQ QFPQQSLGSK YEPSQVRDFV HSMSLPSSYN GKDAAVGTEN CNTDSQNSVV FGVHIDSSGL LLPTTVSSFT TSVDPGVSSM PLGDSGFHNS MYGCMQDSSE LLHNVGQIDQ LTPTRTFVKV YKSGSVGRSL DISRFSSYNE LREELGQMFG IEGKFEDPLR SGWQLVFVDR ENDVLLLGDD PWEFRSSRPS DESPLSY // ID A0A067EVH8_CITSI Unreviewed; 214 AA. AC A0A067EVH8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO54936.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g039664mg {ECO:0000313|EMBL:KDO54936.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO54936.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO54936.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784990; KDO54936.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 214 214 {ECO:0000313|EMBL:KDO54936.1}. SQ SEQUENCE 214 AA; 24692 MW; E31A8F40E6F4073B CRC64; MAKTNTYEEA RKKRLEENSQ RLQELGIEKI SKTLSQLSKS VKKSPQAQRH LPKFKSESVI SIVEPRRSSR ARNSVVSYRD DLDIDLHPLR KSYLARPLEE VKMASYEERA RALKSAEQLQ SSLQSGYPSF IKSMVRSHVY SCFWLGLPNQ FCKQNLPKTV TEMVLEDENG REFEAVYIGQ KKGLSGGWRA FALHHKLDDG DALVFELVEQ KRFK // ID A0A067EX03_CITSI Unreviewed; 127 AA. AC A0A067EX03; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO55707.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g0421001mg {ECO:0000313|EMBL:KDO55707.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO55707.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO55707.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784981; KDO55707.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO55707.1}. SQ SEQUENCE 127 AA; 14439 MW; D1181FC9D753D769 CRC64; PISPSSLEIP PRFVKVVLPS TLRDQKMRIP NKIVRKIGNE LSDVAHITIP NGYVWQVKLK KEGRKVRSDY GWQDFVEAYS ISVGSLVLFE YESNSTFQAH IYDETACEIN YPSSNEESHT SGEESHP // ID A0A067F1F8_CITSI Unreviewed; 728 AA. AC A0A067F1F8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57332.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57332.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57332.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57332.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 692 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 728 AA; 81510 MW; F7D41AE854EC47AC CRC64; MHADVETDEV YAQMTLQPLS PEEQKDTFVP IELGIPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PSLDFSLQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRAIRPPT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF TVFFNPRASP SEFVIPLTKY VKAVFHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWSNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHPSTSS FNDNRDETAS GLNWLRGGTG EQGLTTLNFQ SLGMFPWMQQ RVEPSFLGND HNQQYQAMLA AGMQSGDPVR QQFMQLQQPF QYLQQSGSQN PLQLKQQQHL LQQLNSQAED RAQQQQQPQQ HMYHDALQIR TDELLQRQQS NLPSPSFSKA NFMDSSTEIS VSISPMQNML GSLPEGSGNL LNFSGAGPSM LRQQFPQQSL GSKYEPSQVR DFVHSMSLPS SYNGKDAAVG TENCNTDSQN SVVFGVHIDS SGLLLPTTVS SFTTSVDPGV SSMPLGDSGF HNSMYGCMQD SSELLHNVGQ IDQLTPTRTF VKVYKSGSVG RSLDISRFSS YNELREELGQ MFGIEGKFED PLRSGWQLVF VDRENDVLLL GDDPWEAFVS NVWYIKILSP EDVQKMGEQG VESFSPSSGQ RANSRGNCGR DPVGSLEY // ID A0A067F2A0_CITSI Unreviewed; 799 AA. AC A0A067F2A0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003544mg {ECO:0000313|EMBL:KDO57331.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO57331.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO57331.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784963; KDO57331.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 679 763 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 799 AA; 89258 MW; BB83F595C8489207 CRC64; MIGDNKCLNS ELWHACAGPL VSLPTVGTRV VYFPQGHSEQ VAATTNKEVD SHIPNYPNLP PQLICQLHNV TMHADVETDE VYAQMTLQPL SPEEQKDTFV PIELGIPSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPSLDFSLQP PAQELIARDL HDVEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRAIRPP TVMPSSVLSS DSMHIGLLAA AAHAAATNSC FTVFFNPRAS PSEFVIPLTK YVKAVFHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DPVRWSNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWHPSTS SFNDNRDETA SGLNWLRGGT GEQGLTTLNF QSLGMFPWMQ QRVEPSFLGN DHNQQYQAML AAGMQSGDPV RQQFMQLQQP FQYLQQSGSQ NPLQLKQQQH LLQQLNSQAE DRAQQQQQPQ QHMYHDALQI RTDELLQRQQ SNLPSPSFSK ANFMDSSTEI SVSISPMQNM LGSLPEGSGN LLNFSGAGPS MLRQQFPQQS LGSKYEPSQV RDFVHSMSLP SSYNGKDAAV GTENCNTDSQ NSVVFGVHID SSGLLLPTTV SSFTTSVDPG VSSMPLGDSG FHNSMYGCMQ DSSELLHNVG QIDQLTPTRT FVKVYKSGSV GRSLDISRFS SYNELREELG QMFGIEGKFE DPLRSGWQLV FVDRENDVLL LGDDPWEAFV SNVWYIKILS PEDVQKMGEQ GVESFSPSSG QRANSRGNCG RDPVGSLEY // ID A0A067F3S4_CITSI Unreviewed; 928 AA. AC A0A067F3S4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001969mg {ECO:0000313|EMBL:KDO62013.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO62013.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO62013.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784922; KDO62012.1; -; Genomic_DNA. DR EMBL; KK784922; KDO62013.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 928 AA; 102416 MW; 78158EEBE57DE1B1 CRC64; MKKDIDGQIP NYPNLPSKLL CILLNVTLHA DTETDEVYAQ MTLQPVPSYD REALLRSDLA LKSNKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LMARDLHDNI WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPANLS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VHSNQISLGM RFRMMFETEE SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTAGE KRNRVSIWEI EPVTAPFFIC PPPFFRSKHP RQADDDASDL DNVFKRTMPW IGDDFGVKDS QSLPGLSLVQ WMNMQQNPSL ANAMQSSYMH SLPGSILQNL NGGLSQMPQQ NNLQYTGQSL PQQVPQIDQL AKLPSTVNPL GSNILPQQPL GDISQQSRQN MITQNLPSGP VQAQVLQPQN LVQTSNILQQ QPSIQNPQLP ANLPQNLQQQ QQQQHIMGQN QQQNLMQTQL PDPINQNLQM SDKQIQLHLL QKLQQQRQSL LSQQSALQQP AQLIQLQDQQ RQLLDASQSF SRSGTPTQML EMHQVTPTSL PQSNIMSQQI ANSGSLNNVQ FSQPPQQPKL EQQQPGILPQ MPGHMGLPAS HIINPVSTAG NSALTGAAGV GQSVITDDNP SCSTSPSTNN CQRLIQPTIN SRTHRSAGIG EEVAQSASAL LNPSALETMP SNANLVKDLP HKSDVKPSVN ISKTQNQGFF TPQTYLNGAA TQTDYLDTSS STTSVCLSQN DVHLQQNNSL SYNPQSTLRD ASQDGEVPVD PRSNIPYGAN IDGPLGSMNP DPLLTKGMMG LGKDFSNNIS SGAMLANYEN SKDAQQELSS SIVSQSFGVP DMAFNSIDST INDSSFLNGG PWAPPPQFPQ RMRTYTKV // ID A0A067F6V7_CITSI Unreviewed; 305 AA. AC A0A067F6V7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO58941.1}; GN ORFNames=CISIN_1g021945mg {ECO:0000313|EMBL:KDO58941.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO58941.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO58941.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784943; KDO58941.1; -; Genomic_DNA. DR RefSeq; XP_006482296.1; XM_006482233.2. DR GeneID; 102623456; -. DR KEGG; cit:102623456; -. DR KO; K09287; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 87 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 164 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 87 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 164 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 34623 MW; DAFC7452E069A372 CRC64; MASNSSSVDL DHDHNLSENG IDAESKKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF IEEEEAARVY DTAALRFRGQ NAITNFRTSL ETDDEDDYME KIFLSSHSKA EIVDMLRKHT YKHELEQSKQ NYACVGISCY NNSSGFSDLF GSNCFQETPV EFLFEKVLTP SDVGKLNRMV IPKQQAEKHF ALSSEIASKG LLLNFEDSTQ KVWRLRYCYW SSSQSYVLTK GWSRFVKEKG VKAGDTVSFW RSNVGSNSKL FIDCKLQQNG NGSGFEEMQS QVPNIGVVRL FGVNILEDPN NLCCR // ID A0A067F6V9_CITSI Unreviewed; 463 AA. AC A0A067F6V9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g012439mg {ECO:0000313|EMBL:KDO63078.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO63078.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO63078.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784915; KDO63078.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 463 AA; 51232 MW; 393213DB56978DD0 CRC64; MVGLIDLNKT KDDENPSSGS LASASGVSSE LWHACAGPLI SLPKRGSVVV YFPQGHLEHV SDFSAAASAA YDIPPHLFCR VADVKLHADA ASDEVYAQVS LVHDELIEQK VRKGKIKEDG DEESVEVAAK SSTPHMFCKT LTASDTSTCG GFSVPRRAAE DCFPPLDYMQ QRPSQQLVAK DLHGVEWKFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGEDGE LKIGIRRAAQ VKNGATFPSF CNQHSSTSSV TEVVDAIARK RAFSISYNPR ASASEFVIPV NKFLKSLDHP FAEGMRFKMR SETEDAAEQR CSGLIVGVSD MDPVRWPGSK WRCLLVRWDD VESNRHNRVS PWEIEPSGSN ILVTSGLRRT RIGLPLWRPE FPVPEGIGVT DFGESLRFQT VLQGQEISPK SPYGRAPTNN EAHDIAALES LTVFRYQDLF IIGTCTRYRS AVS // ID A0A067F782_CITSI Unreviewed; 825 AA. AC A0A067F782; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001969mg {ECO:0000313|EMBL:KDO62015.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO62015.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO62015.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784922; KDO62015.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 70 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 70 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 825 AA; 90921 MW; 3E2DFE77E344910F CRC64; MQPPAQELMA RDLHDNIWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN RQPANLSSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVVP LAKYYKAVHS NQISLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESTAGEKRN RVSIWEIEPV TAPFFICPPP FFRSKHPRQA DDDASDLDNV FKRTMPWIGD DFGVKDSQSL PGLSLVQWMN MQQNPSLANA MQSSYMHSLP GSILQNLNGG LSQMPQQNNL QYTGQSLPQQ VPQIDQLAKL PSTVNPLGSN ILPQQPLGDI SQQSRQNMIT QNLPSGPVQA QVLQPQNLVQ TSNILQQQPS IQNPQLPANL PQNLQQQQQQ QHIMGQNQQQ NLMQTQLPDP INQNLQMSDK QIQLHLLQKL QQQRQSLLSQ QSALQQPAQL IQLQDQQRQL LDASQSFSRS GTPTQMLEMH QVTPTSLPQS NIMSQQIANS GSLNNVQFSQ PPQQPKLEQQ QPGILPQMPG HMGLPASHII NPVSTAGNSA LTGAAGVGQS VITDDNPSCS TSPSTNNCQR LIQPTINSRT HRSAGIGEEV AQSASALLNP SALETMPSNA NLVKDLPHKS DVKPSVNISK TQNQGFFTPQ TYLNGAATQT DYLDTSSSTT SVCLSQNDVH LQQNNSLSYN PQSTLRDASQ DGEVPVDPRS NIPYGANIDG PLGSMNPDPL LTKGMMGLGK DFSNNISSGA MLANYENSKD AQQELSSSIV SQSFGVPDMA FNSIDSTIND SSFLNGGPWA PPPQFPQRMR TYTKV // ID A0A067F7E2_CITSI Unreviewed; 322 AA. AC A0A067F7E2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO59412.1}; GN ORFNames=CISIN_1g018549mg {ECO:0000313|EMBL:KDO59412.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO59412.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO59412.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784940; KDO59412.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 134 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 134 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 322 AA; 36771 MW; 9DB4F70558096AE6 CRC64; MEEEMLSIIS NGETNVIPEL SDSISSTPLI PATKRLRHAS AVSKFKGVVP QQNGHWGAQI YANHQRIWLG TFKSEKDAAM AYDSAAIRLR GVDSHRNFPW TKITIEEPNF QSHYSTEAVI NMIRDGSYSS RQLFQKELTP SDVGKLNRLV IPKKYAVKYF PQISERVEEH AENDKADDVQ LVFHDKSMKL WKFRYCYWKS SQSFVFTRGW NRFVKENQLK ANDTICFYLC ELRDIAKGTK TFGMIDAKKG ENSGASAEVS GPYVDMKVDL QLQLGQNKKE NKVEEDDNGN EIEATEEVEL KAPSSTSDSE RKLFKLFGVE IF // ID A0A067F7Q6_CITSI Unreviewed; 886 AA. AC A0A067F7Q6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002390mg {ECO:0000313|EMBL:KDO63434.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO63434.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO63434.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784913; KDO63434.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 753 837 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 886 AA; 97730 MW; 5286730406ABA946 CRC64; MRLATSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPN LPPQLICQLH NLTMHADVET DEQEQKDVYL LPAELGAPNK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSQT PPAQELIARD LHDNEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRATRP QTVMPSSVLS SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGISD LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYSSPFPL RLKRPWPSGL PSFHGMKDGD MSINSPLMWL QGGVGDQGIQ SLNFQGYGVT PWMQPRLDAS IPGLQPDVYQ AMAAAALQEM RTVDSSKLAS QSLLQFQQSQ NVSNGTASMI PRQMLQQSQA QNALLQSFQE NQASAQAQLL QQQLQRQHSY NEQRQQQQQV QQSQQLHQLS VQPQISNVIS TLPHLASSSQ SQPPTLQTVA SQCQQSNFSD SLGNPIASSD VSSMHTILGS LSQAGASHLL NSNASNPIIS SSAMLTKQVT VDNHVPSAVS HCILPQVEQL GAQQSNVSEL ASLLPPFPGR EYSSYHGSGD PQNNLLFGVS IDSSLMGQNG LPNLKNISSE NESLSLPYAA SNFTNNVGTD FPLNSDMTTS SCVDESGFLQ SSENVDQVNP PTRTFVKVHK SGSFGRSLDI SKFSSYDELR SELARMFGLE GQLEDPQRSG WQLVFVDREN DVLLLGDDPW QEFVNNVGYI KILSPLEVQQ MGKGLSPVTS GPGQRLSSNN NFDDYVSRQE LRSSSNGVAS MGSINY // ID A0A067F7V4_CITSI Unreviewed; 898 AA. AC A0A067F7V4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002390mg {ECO:0000313|EMBL:KDO63433.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO63433.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO63433.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784913; KDO63433.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 765 849 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 898 AA; 99060 MW; 5DE7512B9C4951BE CRC64; MRLATSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPN LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QTPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS GLPSFHGMKD GDMSINSPLM WLQGGVGDQG IQSLNFQGYG VTPWMQPRLD ASIPGLQPDV YQAMAAAALQ EMRTVDSSKL ASQSLLQFQQ SQNVSNGTAS MIPRQMLQQS QAQNALLQSF QENQASAQAQ LLQQQLQRQH SYNEQRQQQQ QVQQSQQLHQ LSVQPQISNV ISTLPHLASS SQSQPPTLQT VASQCQQSNF SDSLGNPIAS SDVSSMHTIL GSLSQAGASH LLNSNASNPI ISSSAMLTKQ VTVDNHVPSA VSHCILPQVE QLGAQQSNVS ELASLLPPFP GREYSSYHGS GDPQNNLLFG VSIDSSLMGQ NGLPNLKNIS SENESLSLPY AASNFTNNVG TDFPLNSDMT TSSCVDESGF LQSSENVDQV NPPTRTFVKV HKSGSFGRSL DISKFSSYDE LRSELARMFG LEGQLEDPQR SGWQLVFVDR ENDVLLLGDD PWQEFVNNVG YIKILSPLEV QQMGKGLSPV TSGPGQRLSS NNNFDDYVSR QELRSSSNGV ASMGSINY // ID A0A067F891_CITSI Unreviewed; 354 AA. AC A0A067F891; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO59411.1}; GN ORFNames=CISIN_1g018549mg {ECO:0000313|EMBL:KDO59411.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO59411.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO59411.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784940; KDO59411.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40561 MW; F8CE5E7A89C2683D CRC64; MEEEMLSIIS NGETNVIPEL SDSISSTPLI PATKRLRHAS AVSKFKGVVP QQNGHWGAQI YANHQRIWLG TFKSEKDAAM AYDSAAIRLR GVDSHRNFPW TKITIEEPNF QSHYSTEAVI NMIRDGSYSS RFADFLRSHS RTLEEDVIFT QMRAGTDGWM MCRQLFQKEL TPSDVGKLNR LVIPKKYAVK YFPQISERVE EHAENDKADD VQLVFHDKSM KLWKFRYCYW KSSQSFVFTR GWNRFVKENQ LKANDTICFY LCELRDIAKG TKTFGMIDAK KGENSGASAE VSGPYVDMKV DLQLQLGQNK KENKVEEDDN GNEIEATEEV ELKAPSSTSD SERKLFKLFG VEIF // ID A0A067F9M7_CITSI Unreviewed; 856 AA. AC A0A067F9M7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO64089.1}; GN ORFNames=CISIN_1g002708mg {ECO:0000313|EMBL:KDO64089.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO64089.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO64089.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784908; KDO64089.1; -; Genomic_DNA. DR EMBL; KK784908; KDO64090.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 267 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 532 582 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 267 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 856 AA; 94223 MW; 6661767CB70F2A2C CRC64; MESRTCMNGK CRASSSIEWR KGWPLQSGGF AVLCDKCGSA FEKLIFCDEF HSKDSGWRKC ASCSKIPGDD PNGFGTLKTD NAGDLPSTSV DNQLGGSDDK FKLLQLGNSS ESVGLRHLLQ FRNDDLDGSF RKVKPEEAAK SDISKANIGA KDIYGPLAHT NLSITLGSPG INSNSFPSAV VDEKEHSKTS AIIHQGPKSR HLLPKPPKLA LATGSEANAG ISQIRVARPP AEGRGRNQLL PRYWPRITDQ ELQQLSGDSN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRMDPEGKL VMGFRKASNA VSVQDTQPSA IPNGGHSSES FFSGVFENLS ILSGYSGVLQ SLKGSTDPHL SALSKQLNSP PGDINWVKSE KHEDKTREGL LPPSMLVPER KRSRNIGSKR KRLLIDRLDV LELKLTWEEA QDMLYPPPSV MPSIVTVEDH VFEEYEDPPV FGKRSIFIVR TSGGQEQWAQ CDGCSKWRRL PVDVLLPPKW TCMDNVWDHN RCSCSAPDEL TPREVENLLR LNKDFKKRKI ATSHRLNQEH EPSGLDALSN AAILGENMGD PGTASVATTT KHPRHRPGCS CIVCIQPPSG KGKHKPTCTC LVCMTVKRRF KTLMMRKKKR QSEREEEVAQ RNQPTWGPKE EAEVDSSSKH VSSHLDPSEN EARSANELES KSQNNNLSGK LAESSKAELD LNCHPDREEV QAGLNRVSMM KLLQVASHPL ETYLKQNGLT SLTSDQQASS GTHAPPQAAG ESEGQLNELA SATQERESGG EDNCEPVSDQ IPDDPE // ID A0A067FB93_CITSI Unreviewed; 833 AA. AC A0A067FB93; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002390mg {ECO:0000313|EMBL:KDO63435.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO63435.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO63435.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784913; KDO63435.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 765 833 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 833 AA; 92039 MW; 49B67D8E5ADE18E1 CRC64; MRLATSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPN LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QTPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS GLPSFHGMKD GDMSINSPLM WLQGGVGDQG IQSLNFQGYG VTPWMQPRLD ASIPGLQPDV YQAMAAAALQ EMRTVDSSKL ASQSLLQFQQ SQNVSNGTAS MIPRQMLQQS QAQNALLQSF QENQASAQAQ LLQQQLQRQH SYNEQRQQQQ QVQQSQQLHQ LSVQPQISNV ISTLPHLASS SQSQPPTLQT VASQCQQSNF SDSLGNPIAS SDVSSMHTIL GSLSQAGASH LLNSNASNPI ISSSAMLTKQ VTVDNHVPSA VSHCILPQVE QLGAQQSNVS ELASLLPPFP GREYSSYHGS GDPQNNLLFG VSIDSSLMGQ NGLPNLKNIS SENESLSLPY AASNFTNNVG TDFPLNSDMT TSSCVDESGF LQSSENVDQV NPPTRTFVKV HKSGSFGRSL DISKFSSYDE LRSELARMFG LEGQLEDPQR SGWQLVFVDR ENDVLLLGDD PWQ // ID A0A067FES8_CITSI Unreviewed; 721 AA. AC A0A067FES8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO65858.1}; GN ORFNames=CISIN_1g038867mg {ECO:0000313|EMBL:KDO65858.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO65858.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO65858.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784901; KDO65858.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 575 679 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 575 679 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 721 AA; 80125 MW; 99BC15FA9F5F8988 CRC64; MKNLQLHGED LHARSKIEAN NHTGFQAMTE EQVTGAGAER EIYMQDDLLD VDDASIFYAD FPPLPDFPCM SSSSSSSSTP AAVKAITSSA SSSSASSSSS AASWAVLRSD AEEDVDKKNH QDQSGDAATQ PALSSTASMD ISQATDTSID GVGVDCMDVM ENFVFMDLLD NNDLFDPSSI FNQDDSQPFE GYQQQQQQNQ TQHEHRQQER DQELMMQSNN GDNSNEDGGA SDDLAMVFLE WLKSNKETVS AEDLRNVKIK KSTIECAAKR LGGGKEAMKQ LLKLILEWVQ TNHLQKRRMR EALLPASNNN NNLPYQQHFQ DTFQNPNPNP NPNHNCNPIP PEPNPCFAQS SWIGQPSFIH DPATMVTGFP TPAVGYMGDS FANGMSNING HGYAAPPSEY HMLETTRSWP NSQFGLASNY NSFSDNNLHP APLHPQAFTG YGNQYPYPYL PGHGEQRLMR MGSSATKEAR KKRMARQRRL STHPRHQHHH NNQQNQLQGQ NADQHARFGS DNCNPAAQAN SGNWVFWPAS AGGPAAVSPL SPVDRQPMQP QNYQRQPASD RRQGWKPEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH LPELEARDGI SIAMEDIGTS RVWNMRYSFR FWPNNKSRMY LLENTGDFVK ANGLQEGDFI VIYSDVKCGK YLIRGVKVRQ PGPKSETKRT GKSQRNQHAN PPSAAMGNGS SSSLQVPQTV K // ID A0A067FFL5_CITSI Unreviewed; 989 AA. AC A0A067FFL5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001969mg {ECO:0000313|EMBL:KDO62011.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO62011.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO62011.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784922; KDO62011.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 989 AA; 108488 MW; 02D6437F48539F7D CRC64; MKTPANTAGA ASNSGEGGGG EKKTINTELW HACAGPLVNL PAAGTHVVYF PQGHSEQVAA SMKKDIDGQI PNYPNLPSKL LCILLNVTLH ADTETDEVYA QMTLQPVPSY DREALLRSDL ALKSNKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELMARDLHDN IWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPANL SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVVPLAKYYK AVHSNQISLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG EKRNRVSIWE IEPVTAPFFI CPPPFFRSKH PRQADDDASD LDNVFKRTMP WIGDDFGVKD SQSLPGLSLV QWMNMQQNPS LANAMQSSYM HSLPGSILQN LNGGLSQMPQ QNNLQYTGQS LPQQVPQIDQ LAKLPSTVNP LGSNILPQQP LGDISQQSRQ NMITQNLPSG PVQAQVLQPQ NLVQTSNILQ QQPSIQNPQL PANLPQNLQQ QQQQQHIMGQ NQQQNLMQTQ LPDPINQNLQ MSDKQIQLHL LQKLQQQRQS LLSQQSALQQ PAQLIQLQDQ QRQLLDASQS FSRSGTPTQM LEMHQVTPTS LPQSNIMSQQ IANSGSLNNV QFSQPPQQPK LEQQQPGILP QMPGHMGLPA SHIINPVSTA GNSALTGAAG VGQSVITDDN PSCSTSPSTN NCQRLIQPTI NSRTHRSAGI GEEVAQSASA LLNPSALETM PSNANLVKDL PHKSDVKPSV NISKTQNQGF FTPQTYLNGA ATQTDYLDTS SSTTSVCLSQ NDVHLQQNNS LSYNPQSTLR DASQDGEVPV DPRSNIPYGA NIDGPLGSMN PDPLLTKGMM GLGKDFSNNI SSGAMLANYE NSKDAQQELS SSIVSQSFGV PDMAFNSIDS TINDSSFLNG GPWAPPPQFP QRMRTYTKV // ID A0A067FGG4_CITSI Unreviewed; 241 AA. AC A0A067FGG4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO66494.1}; GN ORFNames=CISIN_1g046253mg {ECO:0000313|EMBL:KDO66494.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO66494.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO66494.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784899; KDO66494.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 230 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 241 AA; 26974 MW; 7D33550FAF888407 CRC64; MNQNSMANGN NYPEELKKQG AAALALTCIK NRRLDKKAKA NLHKYLKTTY LGKSISVQVN NNAAEINTSS SSPSSTAEAA NLNLVEDNGA HGDGYVDGDD DYKPPDIPPV RNLNGVIGNC SKPLEKKLTN TDLKVNQCRL SMNRGKVLEL LVPLLNEEEY RVLKEGIPVT VYDLDGNAFP MSFKVWSESK YYVLTSGWTK FHQNKGLADK HVVTLWMFRH AETQKLCFVI SWREVIAKKI K // ID A0A067FJ09_CITSI Unreviewed; 815 AA. AC A0A067FJ09; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002390mg {ECO:0000313|EMBL:KDO63437.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO63437.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO63437.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784913; KDO63437.1; -; Genomic_DNA. DR EMBL; KK784913; KDO63438.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 682 766 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 45 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 815 AA; 89970 MW; B2D26FA837937015 CRC64; MHADVETDEV YAQMTLQPLS PQEQKDVYLL PAELGAPNKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDYSQTP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DPVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYSSPFPLR LKRPWPSGLP SFHGMKDGDM SINSPLMWLQ GGVGDQGIQS LNFQGYGVTP WMQPRLDASI PGLQPDVYQA MAAAALQEMR TVDSSKLASQ SLLQFQQSQN VSNGTASMIP RQMLQQSQAQ NALLQSFQEN QASAQAQLLQ QQLQRQHSYN EQRQQQQQVQ QSQQLHQLSV QPQISNVIST LPHLASSSQS QPPTLQTVAS QCQQSNFSDS LGNPIASSDV SSMHTILGSL SQAGASHLLN SNASNPIISS SAMLTKQVTV DNHVPSAVSH CILPQVEQLG AQQSNVSELA SLLPPFPGRE YSSYHGSGDP QNNLLFGVSI DSSLMGQNGL PNLKNISSEN ESLSLPYAAS NFTNNVGTDF PLNSDMTTSS CVDESGFLQS SENVDQVNPP TRTFVKVHKS GSFGRSLDIS KFSSYDELRS ELARMFGLEG QLEDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVGYIK ILSPLEVQQM GKGLSPVTSG PGQRLSSNNN FDDYVSRQEL RSSSNGVASM GSINY // ID A0A067FJQ5_CITSI Unreviewed; 928 AA. AC A0A067FJQ5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002390mg {ECO:0000313|EMBL:KDO63436.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO63436.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO63436.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784913; KDO63436.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 795 879 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 928 AA; 102596 MW; 75AFF58456E5A898 CRC64; MNFIHSNPVL LGIPYKLDQI VLNFVLFFSL VMMLDNTKCR ENFAGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPN LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QTPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS GLPSFHGMKD GDMSINSPLM WLQGGVGDQG IQSLNFQGYG VTPWMQPRLD ASIPGLQPDV YQAMAAAALQ EMRTVDSSKL ASQSLLQFQQ SQNVSNGTAS MIPRQMLQQS QAQNALLQSF QENQASAQAQ LLQQQLQRQH SYNEQRQQQQ QVQQSQQLHQ LSVQPQISNV ISTLPHLASS SQSQPPTLQT VASQCQQSNF SDSLGNPIAS SDVSSMHTIL GSLSQAGASH LLNSNASNPI ISSSAMLTKQ VTVDNHVPSA VSHCILPQVE QLGAQQSNVS ELASLLPPFP GREYSSYHGS GDPQNNLLFG VSIDSSLMGQ NGLPNLKNIS SENESLSLPY AASNFTNNVG TDFPLNSDMT TSSCVDESGF LQSSENVDQV NPPTRTFVKV HKSGSFGRSL DISKFSSYDE LRSELARMFG LEGQLEDPQR SGWQLVFVDR ENDVLLLGDD PWQEFVNNVG YIKILSPLEV QQMGKGLSPV TSGPGQRLSS NNNFDDYVSR QELRSSSNGV ASMGSINY // ID A0A067FKW8_CITSI Unreviewed; 890 AA. AC A0A067FKW8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO64092.1}; GN ORFNames=CISIN_1g002708mg {ECO:0000313|EMBL:KDO64092.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO64092.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO64092.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784908; KDO64091.1; -; Genomic_DNA. DR EMBL; KK784908; KDO64092.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 301 402 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 566 616 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 301 402 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 890 AA; 97733 MW; 848FE616C3CC0EDF CRC64; MESRTCMNGK CRASSSIEWR KGWPLQSGGF AVLCDKCGSA FEKLIFCDEF HSKDSGWRKC ASCSKRLHCG CIASLSLIQL LDGGGVWCIN CAKNPGLDSI PGDDPNGFGT LKTDNAGDLP STSVDNQLGG SDDKFKLLQL GNSSESVGLR HLLQFRNDDL DGSFRKVKPE EAAKSDISKA NIGAKDIYGP LAHTNLSITL GSPGINSNSF PSAVVDEKEH SKTSAIIHQG PKSRHLLPKP PKLALATGSE ANAGISQIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQLS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ASNAVSVQDT QPSAIPNGGH SSESFFSGVF ENLSILSGYS GVLQSLKGST DPHLSALSKQ LNSPPGDINW VKSEKHEDKT REGLLPPSML VPERKRSRNI GSKRKRLLID RLDVLELKLT WEEAQDMLYP PPSVMPSIVT VEDHVFEEYE DPPVFGKRSI FIVRTSGGQE QWAQCDGCSK WRRLPVDVLL PPKWTCMDNV WDHNRCSCSA PDELTPREVE NLLRLNKDFK KRKIATSHRL NQEHEPSGLD ALSNAAILGE NMGDPGTASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCLVCMTV KRRFKTLMMR KKKRQSEREE EVAQRNQPTW GPKEEAEVDS SSKHVSSHLD PSENEARSAN ELESKSQNNN LSGKLAESSK AELDLNCHPD REEVQAGLNR VSMMKLLQVA SHPLETYLKQ NGLTSLTSDQ QASSGTHAPP QAAGESEGQL NELASATQER ESGGEDNCEP VSDQIPDDPE // ID A0A067FRT4_CITSI Unreviewed; 378 AA. AC A0A067FRT4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO70089.1}; GN ORFNames=CISIN_1g017035mg {ECO:0000313|EMBL:KDO70089.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO70089.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO70089.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784891; KDO70089.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 207 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 207 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 42006 MW; 093D239554E7EA0F CRC64; MKREEMDGSC MDESTTTDSA STSPPITFPA SIPPTKSPES LCRVGSGASS VILDSEAGVE AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDI AAQRFRGRDA VTNFKQISCA GTSSDDGDIE MAFLSSHSKS EIVDMLRKHT YNDELEQSKR NYGLDANGKR VIKHGEGDGA ATAFGSDRVL KARDQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSGST SKGLLLNFED VTGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFHRSTGGDR QLYIDWKART GPIENPVEPV QMMRLFGVNI FKIPGNGLVG VDKIGCNINN NNNNGKRLRE MELLSLECSK KQRMIGAL // ID A0A067G0V2_CITSI Unreviewed; 660 AA. AC A0A067G0V2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003580mg {ECO:0000313|EMBL:KDO73198.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73198.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73198.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784886; KDO73198.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 46 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 64 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 531 613 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 64 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 660 AA; 73904 MW; 4EDC550FF431A645 CRC64; MRRGVEDHLQ NQLLICSAKH LQLLILVPMA GSLFLVGLPK IVSLLWTINS RDPLKSLLPR TCMEWSGGFD IFIEFNVYYL LGQPRRHLLT TGWSIFVSQK NLVSGDAVLF LRGKDGELRL GIRRSVQPRN GLPDSILSKQ NSYPNVLSVV ANAVSTKSMF HVFYSPRATH ADFVIPYQKY VKIIMNPICI GTRFKMRFEM DDSPERRCNG VVTGITDLDP YRWPNSKWRC LMVRWDECIG SDHQEQVSPW EIDRSVSLPP LSIQSSPRMK KLRTGLQAPP PDYPVSARGG GVLDFEESVR SSKVLQGQEN VGFVSPLYGC DTVNHPLGFE MRAPAHQSLA LNGIRKDNIN ELVRALPTSY TGFVESNRFP KVLQGQEICP LRSLTGKVDL NLGTWGKPNF GCNSMNMYQA SKPNIYPPPS ESLSNMFFPY GDMPKTVQHH TMPPYASNLQ RENVKLNSSS IQMPAIGAEI RKANLLNEHK PVENIPTPTF KANMRSHKDG SFNGTAAGCK LFGFSLTSET PTPSSQSPGK RSCTKVHKQG SLVGRAIDLW RLNGYNDLLS ELEHLFNMEG LLRDPAKGWR ILYTDSENDV MVVGDDPWHE FCNEVSKIHI YTQEEVEKMT IGTTDDTQSC LDQAPVIMEV SVSKSSSVSQ PDSSPTVVRV // ID A0A067G0W3_CITSI Unreviewed; 420 AA. AC A0A067G0W3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO69352.1}; GN ORFNames=CISIN_1g048609mg {ECO:0000313|EMBL:KDO69352.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO69352.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO69352.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784892; KDO69352.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 322 400 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 322 400 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 47134 MW; 0AFD9E6E0C06E19C CRC64; MGGKVEACAE CTKKCLLVHR NKAKLSPVIH SFFKIMIGKD CSEILFLPPK FAEMVSAVIG KKAVIEDSSG DCWEVSVSNV DGSPAFRQGW NAFSAYHRLE IGDFLVFDYI RGSRFIVKIF DKTGCEKQKI SLTMNKRKRY RTRTNFTDRE GQCYTADTGN NCGTAIRDKM KDGDDYSHHA DASLISEFED VLVNKYLVDK EIPNRVAASH ASDMDIMKNN GVEKTEQIIS RVELQKDGGN NSNVSSGVSQ KCHGAEEESK ALSRNLPQLI KVERGLRYDM IGREYGISQV VKTETLDLVP TSYIPCATPS DGQPFLELST CLPTSSFRGR SRTQRKVVVL RDPDMRMWPV LYHERSGFKV LTSGWEAFSK ANNIQPGDGC IFGVESYSES IYGVSIVRKH LLRRCLSTVL PNYIINSLRK // ID A0A067G123_CITSI Unreviewed; 374 AA. AC A0A067G123; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=CISIN_1g0048961mg {ECO:0000313|EMBL:KDO73314.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73314.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73314.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784886; KDO73313.1; -; Genomic_DNA. DR EMBL; KK784886; KDO73314.1; -; Genomic_DNA. DR EMBL; KK784886; KDO73315.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 374 374 {ECO:0000313|EMBL:KDO73314.1}. SQ SEQUENCE 374 AA; 41115 MW; AE34A6BAD62CBF16 CRC64; MKEVEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS SRIPPLIFCR VSSLKFLADS ETDEVYAKIK LVPIPANEID FEDNNLSLNS VGSDSESEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RAQDGDLCVG IRRAKKGIGG GNEYPSSGWN SNNGSCVTGN PFGGFSCFLR EEENKMARNG NMNLNSYGSF NSSGNTRGNG GRVKPEMVLE AVALAASGKP FEVVYYPRAS TPEFCVKASA VKAAMRVHWL CGMRFKMAFE TEDSSRISWF MGTISSVQVA DPISWPNSPW RLLQ // ID A0A067G2H0_CITSI Unreviewed; 1020 AA. AC A0A067G2H0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001728mg {ECO:0000313|EMBL:KDO73824.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73824.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73824.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784885; KDO73824.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1020 AA; 114037 MW; 40895CD9B2BE4EB7 CRC64; MKPPANGFLP SSAEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE NDFIPNYPNL PSKLICMLHS VTLHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVARD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITSISDL DPLRWKNSQW RNLQVGWDES TAGERPSRVS LWETEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDATSSI FPGLSLVQWM SMQQNNQFPA AQSGFFPSMV SSTGLHSNFG TDDPSKLLNF QASALAAPNL QFSKANPQNQ VNQLPQSPIA WTQQQQLQHL LQNPLNQQQQ QHPQLHQQRQ QQQQLLHPQQ SQQQQQQQQN HHHHNQQPPP PPQLQPSPTP PHSQSQSQSP VPQRPQQQPQ QQQQQPQQQI FLPTHVNNGV LVPNANQNVQ QPTVYSQLQQ PQLLTSNTQA PQGILSNNKN SYQLTSLPQD SQFQQQMEQS TGPLQRQQQQ SQLQQSSLQF LQQSLAQRAQ QQPQVQQLAQ QSMSDQQLQS QLQQKLQQQQ QQQLLSPAGS LLQPQLLQQQ LAHQQNQQLS QLPPSQNHQQ QLSNNLSASV LVQPQQLPMN QPQNQNRPLT GTRAHSNHTD GDAPSCSTSP SSNNCQISPS NFLNRNQQGP AMLMGDSVVE PSSNLVQELH SKSDARIKHE LPISKGPEHL KYNGSMTDQV EASSSGTSYC LDPGNIQQNF SLPTYCLDGD TQSHPRNSLP FVANIDGMAP DTLLSRGYDS QKDLHNLLSN YGGTPRDIET ELSTAAISSQ SFAVPNIPFK PACSNEVGIN EAGVLGNGLW ANQTQRMRTF TKVCYAIYSL // ID A0A067G2L5_CITSI Unreviewed; 964 AA. AC A0A067G2L5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001728mg {ECO:0000313|EMBL:KDO73828.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73828.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73828.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784885; KDO73828.1; -; Genomic_DNA. DR EMBL; KK784885; KDO73829.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 964 AA; 108195 MW; EC088B5337D8DFB0 CRC64; MQKENDFIPN YPNLPSKLIC MLHSVTLHAD PETDEVYAQM TLQPVNKYEK EAILASDMGL KQNRQPTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSMQPPAQEI VARDLHDTTW TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KSQLLLGIRR ANRQQPALSS SVISSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF RMMFETEESG VRRYMGTITS ISDLDPLRWK NSQWRNLQVG WDESTAGERP SRVSLWETEP VVTPFYICPP PFFRPKFPKQ PGMPDDESDI ENAFKRAMPW LGDDFGMKDA TSSIFPGLSL VQWMSMQQNN QFPAAQSGFF PSMVSSTGLH SNFGTDDPSK LLNFQASALA APNLQFSKAN PQNQVNQLPQ SPIAWTQQQQ LQHLLQNPLN QQQQQHPQLH QQRQQQQQLL HPQQSQQQQQ QQQNHHHHNQ QPPPPPQLQP SPTPPHSQSQ SQSPVPQRPQ QQPQQQQQQP QQQIFLPTHV NNGVLVPNAN QNVQQPTVYS QLQQPQLLTS NTQAPQGILS NNKNSYQLTS LPQDSQFQQQ MEQSTGPLQR QQQQSQLQQS SLQFLQQSLA QRAQQQPQVQ QLAQQSMSDQ QLQSQLQQKL QQQQQQQLLS PAGSLLQPQL LQQQLAHQQN QQLSQLPPSQ NHQQQLSNNL SASVLVQPQQ LPMNQPQNQN RPLTGTRAHS NHTDGDAPSC STSPSSNNCQ ISPSNFLNRN QQGPAMLMGD SVVEPSSNLV QELHSKSDAR IKHELPISKG PEHLKYNGSM TDQVEASSSG TSYCLDPGNI QQNFSLPTYC LDGDTQSHPR NSLPFVANID GMAPDTLLSR GYDSQKDLHN LLSNYGGTPR DIETELSTAA ISSQSFAVPN IPFKPACSNE VGINEAGVLG NGLWANQTQR MRTFTKVCYA IYSL // ID A0A067G493_CITSI Unreviewed; 343 AA. AC A0A067G493; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO70537.1}; GN ORFNames=CISIN_1g019261mg {ECO:0000313|EMBL:KDO70537.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO70537.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO70537.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784890; KDO70537.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 38428 MW; 6C243B6962F47753 CRC64; MMETTQNSSN NSSSSATDPQ QQQQQLSSWS SPHHHQFYHH HQQHQHHLWL DSYNNNNNNS HHNPTLSFNL NSQHDATEAQ PMTNLNSNQE QELEKEPMFE KPLTPSDVGK LNRLVIPKQH AEKYFPLGGG GADLGSSSSD KGLLLSFEDE SGKCWRFRYS YWNSSQSYVL TKGWSRYVKE KRLDAGDVIL FERHRTDSER LFIGWRRRGA TAVAQVAQAG GAAAGGCGWP RGLYPNHPYP VDVAHGHGVS APLYQHAGSG VQSQTTSVGN SRTLRLFGVN LECQVDDKSE GSESQAEAHG HQQFNYSVEA YDSNSTNRHN HVVGQFNCLC YRHGVIANKI MSN // ID A0A067G5F9_CITSI Unreviewed; 1013 AA. AC A0A067G5F9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001728mg {ECO:0000313|EMBL:KDO73825.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73825.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73825.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784885; KDO73825.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1013 AA; 113485 MW; A12ED460398CFD72 CRC64; MLTETGLWER KTINSELWHA CAGPLVSLPP VGSLVVYFPQ GHSEQVAASM QKENDFIPNY PNLPSKLICM LHSVTLHADP ETDEVYAQMT LQPVNKYEKE AILASDMGLK QNRQPTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDY SMQPPAQEIV ARDLHDTTWT FRHIYRGQPK RHLLTTGWSV FVSTKRLFAG DSVLFIRDEK SQLLLGIRRA NRQQPALSSS VISSDSMHIG ILAAAAHAAA NNSPFTIFYN PRASPSEFVI PLAKYNKAMY TQVSLGMRFR MMFETEESGV RRYMGTITSI SDLDPLRWKN SQWRNLQVGW DESTAGERPS RVSLWETEPV VTPFYICPPP FFRPKFPKQP GMPDDESDIE NAFKRAMPWL GDDFGMKDAT SSIFPGLSLV QWMSMQQNNQ FPAAQSGFFP SMVSSTGLHS NFGTDDPSKL LNFQASALAA PNLQFSKANP QNQVNQLPQS PIAWTQQQQL QHLLQNPLNQ QQQQHPQLHQ QRQQQQQLLH PQQSQQQQQQ QQNHHHHNQQ PPPPPQLQPS PTPPHSQSQS QSPVPQRPQQ QPQQQQQQPQ QQIFLPTHVN NGVLVPNANQ NVQQPTVYSQ LQQPQLLTSN TQAPQGILSN NKNSYQLTSL PQDSQFQQQM EQSTGPLQRQ QQQSQLQQSS LQFLQQSLAQ RAQQQPQVQQ LAQQSMSDQQ LQSQLQQKLQ QQQQQQLLSP AGSLLQPQLL QQQLAHQQNQ QLSQLPPSQN HQQQLSNNLS ASVLVQPQQL PMNQPQNQNR PLTGTRAHSN HTDGDAPSCS TSPSSNNCQI SPSNFLNRNQ QGPAMLMGDS VVEPSSNLVQ ELHSKSDARI KHELPISKGP EHLKYNGSMT DQVEASSSGT SYCLDPGNIQ QNFSLPTYCL DGDTQSHPRN SLPFVANIDG MAPDTLLSRG YDSQKDLHNL LSNYGGTPRD IETELSTAAI SSQSFAVPNI PFKPACSNEV GINEAGVLGN GLWANQTQRM RTFTKVCYAI YSL // ID A0A067G6Z1_CITSI Unreviewed; 896 AA. AC A0A067G6Z1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002624mg {ECO:0000313|EMBL:KDO75359.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75359.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75359.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75359.1; -; Genomic_DNA. DR RefSeq; XP_006468259.1; XM_006468196.2. DR GeneID; 102620318; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 763 847 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 896 AA; 99097 MW; 5E6164D27178D9A8 CRC64; MRLSTAGFSP QHQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGTLS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PPTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYSSPFP LRLKRPWPVG LPAFHDEDLG INSQLMWLRG DGDRGMQSLN FQGLGVTPWM QPRMDASMLG LQNDMYQAMA AAALREMRAV DPSKPNAASL MQFQQPQNLP SRTSALVQSQ MLQQSHPQQT FLQGVQENQH QSQSQTHSQS HLLQPQLQHS HSFNNQQQQP LPQPQQQVDH QQIPSAVSAM SQFASVSQSQ SPPMQAISSL CQQQSFSDSN GNPATNPIVS PLHSLLGSYA QDESSHLLNL PRSNPLIHSP TWPSKRAAVE PLFSSGAPQC VLPSVEQLGP PHANISQNSI SLPPFPGREC SIDQEGSADP QSHLLFGVNI EPSSLLMQNE MSSLGGVGSN SDSTTIPFAS SNYMSTAGAD FSVNPEIAPS SCIDESGFLQ SPENVGQVNP PNRTFVKVYK SGSFGRSLDI TKFSSYHELR SELARMFGLE GHLEDPLRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI KILSPPEVQQ MGKRGNELLN SVPIQRLSNS SCDDYATRQD SRNLSAGITS VGSLDF // ID A0A067G7Y2_CITSI Unreviewed; 886 AA. AC A0A067G7Y2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75743.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75743.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75743.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75743.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75743.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 337 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 565 615 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 337 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 886 AA; 97126 MW; 1A2C88284380E562 CRC64; MSSSSKICFN KECKELKSER PRKGWLLRGG EFAELCDRCG SIYEEGRFCD TFHVNASGWR CCESCGKRVH CGCITSVHAF TLLDAGGIEC MTCARKNVLV APTPSWPPSL FYQTPFPERI KDLSVKNWTQ LAGSGPVPWR QAPSLFNSSI PQPELRPRLP YEVDLSAGID RINASERLSV PSLEKRKLED FSERLMNGGL KSGSRDIPEN ANAGSNCDMQ PSSCLNKPQQ SSTLKDDSST PHFGLAVSYA SPSETNSQIG VSGSHLRPVV QPPLVKQFHG NLPNGADSLG ETQVRNGRPR VDARGRSQLL PRYWPRFTDQ DLQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLKVQDSK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDIVT FSRLEPEGKL VMGFRKASSA SASDQDNEAN KAGTGIPANG HAELADPSSW SKVDKSGYIA TEALGAKSSI SRKRKNTTLG SKSKRLKIEN EDVIELKLTW EEAQGLLRPP PNNVPSVVVI EGYEFEEYED APILGKPTIF ATDNVGEKIQ WVQCEDCSKW RKVPANARLP SKWTCSGNLW DPERSVCSVA QELREEQLED LIAPNNPASS KKLKAAKQEP DCVEALEGLD TLANLAILGE GEGLTASSQA TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCLTVK RRFHTLMLRR EKKQSEKDAE TSRKKQQQQK LPVPEKSADD DPLSCSKTGN NSPNEKKVVS EGSDDDSSRI KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMIRLLQDAT EKYLRQQRLS SSGVNTSSVD NEGLQGGVTG EKISNGITLD GSHQDTDEDH HGSLSVKASA SISATG // ID A0A067G7Y5_CITSI Unreviewed; 586 AA. AC A0A067G7Y5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75748.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75748.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75748.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75748.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75748.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 359 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 359 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 586 AA; 64666 MW; 0845B4FDAB890170 CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDN // ID A0A067G7Y8_CITSI Unreviewed; 830 AA. AC A0A067G7Y8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75753.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75753.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75753.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75753.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75753.1; -; Genomic_DNA. DR EMBL; KK784882; KDO75754.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 281 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 559 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 281 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 830 AA; 90561 MW; 9184BB9C4165364C CRC64; MLLVGGVVSH ARVHCGCITS VHAFTLLDAG GIECMTCARK NVLVAPTPSW PPSLFYQTPF PERIKDLSVK NWTQLAGSGP VPWRQAPSLF NSSIPQPELR PRLPYEVDLS AGIDRINASE RLSVPSLEKR KLEDFSERLM NGGLKSGSRD IPENANAGSN CDMQPSSCLN KPQQSSTLKD DSSTPHFGLA VSYASPSETN SQIGVSGSHL RPVVQPPLVK QFHGNLPNGA DSLGETQVRN GRPRVDARGR SQLLPRYWPR FTDQDLQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SQPEGLPLKV QDSKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQNMQLQAG DIVTFSRLEP EGKLVMGFRK ASSASASDQD NEANKAGTGI PANGHAELAD PSSWSKVDKS GYIATEALGA KSSISRKRKN TTLGSKSKRL KIENEDVIEL KLTWEEAQGL LRPPPNNVPS VVVIEGYEFE EYEDAPILGK PTIFATDNVG EKIQWVQCED CSKWRKVPAN ARLPSKWTCS GNLWDPERSV CSVAQELREE QLEDLIAPNN PASSKKLKAA KQEPDCVEAL EGLDTLANLA ILGEGEGLTA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFHTL MLRREKKQSE KDAETSRKKQ QQQKLPVPEK SADDDPLSCS KTGNNSPNEK KVVSEGSDDD SSRIKSSTSP FKGQIDLNIQ PEREEELSPG SDSGSMIRLL QDATEKYLRQ QRLSSSGVNT SSVDNEGLQG GVTGEKISNG ITLDGSHQDT DEDHHGSLSV KASASISATG // ID A0A067G7Z1_CITSI Unreviewed; 547 AA. AC A0A067G7Z1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75758.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75758.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75758.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75758.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75758.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 226 276 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 1 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 547 AA; 59699 MW; B0D9F23925847A34 CRC64; MLSASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDS KGKEWIFQFR FWPNNNSRMY VLEGVTPCIQ NMQLQAGDIV TFSRLEPEGK LVMGFRKASS ASASDQDNEA NKAGTGIPAN GHAELADPSS WSKVDKSGYI ATEALGAKSS ISRKRKNTTL GSKSKRLKIE NEDVIELKLT WEEAQGLLRP PPNNVPSVVV IEGYEFEEYE DAPILGKPTI FATDNVGEKI QWVQCEDCSK WRKVPANARL PSKWTCSGNL WDPERSVCSV AQELREEQLE DLIAPNNPAS SKKLKAAKQE PDCVEALEGL DTLANLAILG EGEGLTASSQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCLTV KRRFHTLMLR REKKQSEKDA ETSRKKQQQQ KLPVPEKSAD DDPLSCSKTG NNSPNEKKVV SEGSDDDSSR IKSSTSPFKG QIDLNIQPER EEELSPGSDS GSMIRLLQDA TEKYLRQQRL SSSGVNTSSV DNEGLQGGVT GEKISNGITL DGSHQDTDED HHGSLSVKAS ASISATG // ID A0A067G846_CITSI Unreviewed; 916 AA. AC A0A067G846; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75744.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75744.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75744.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75744.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75744.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 367 468 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 645 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 367 468 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 916 AA; 100696 MW; 911CED1552E33A53 CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGWNQF RASRSNCDMQ PSSCLNKPQQ SSTLKDDSST PHFGLAVSYA SPSETNSQIG VSGSHLRPVV QPPLVKQFHG NLPNGADSLG ETQVRNGRPR VDARGRSQLL PRYWPRFTDQ DLQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLKVQDSK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDIVT FSRLEPEGKL VMGFRKASSA SASDQDNEAN KAGTGIPANG HAELADPSSW SKVDKSGYIA TEALGAKSSI SRKRKNTTLG SKSKRLKIEN EDVIELKLTW EEAQGLLRPP PNNVPSVVVI EGYEFEEYED APILGKPTIF ATDNVGEKIQ WVQCEDCSKW RKVPANARLP SKWTCSGNLW DPERSVCSVA QELREEQLED LIAPNNPASS KKLKAAKQEP DCVEALEGLD TLANLAILGE GEGLTASSQA TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCLTVK RRFHTLMLRR EKKQSEKDAE TSRKKQQQQK LPVPEKSADD DPLSCSKTGN NSPNEKKVVS EGSDDDSSRI KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMIRLLQDAT EKYLRQQRLS SSGVNTSSVD NEGLQGGVTG EKISNGITLD GSHQDTDEDH HGSLSVKASA SISATG // ID A0A067G850_CITSI Unreviewed; 571 AA. AC A0A067G850; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75749.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75749.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75749.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75749.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75749.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 359 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 359 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 571 AA; 63111 MW; F56FD931FFE2D5E9 CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY E // ID A0A067G859_CITSI Unreviewed; 533 AA. AC A0A067G859; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75759.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75759.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75759.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75759.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75759.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 262 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 533 AA; 58370 MW; 16ACAC8869ABFFFF CRC64; MHLPMMQAYF PPISQPEGLP LKVQDSKGKE WIFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDIVTFSR LEPEGKLVMG FRKASSASAS DQDNEANKAG TGIPANGHAE LADPSSWSKV DKSGYIATEA LGAKSSISRK RKNTTLGSKS KRLKIENEDV IELKLTWEEA QGLLRPPPNN VPSVVVIEGY EFEEYEDAPI LGKPTIFATD NVGEKIQWVQ CEDCSKWRKV PANARLPSKW TCSGNLWDPE RSVCSVAQEL REEQLEDLIA PNNPASSKKL KAAKQEPDCV EALEGLDTLA NLAILGEGEG LTASSQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF HTLMLRREKK QSEKDAETSR KKQQQQKLPV PEKSADDDPL SCSKTGNNSP NEKKVVSEGS DDDSSRIKSS TSPFKGQIDL NIQPEREEEL SPGSDSGSMI RLLQDATEKY LRQQRLSSSG VNTSSVDNEG LQGGVTGEKI SNGITLDGSH QDTDEDHHGS LSVKASASIS ATG // ID A0A067G9R0_CITSI Unreviewed; 899 AA. AC A0A067G9R0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002624mg {ECO:0000313|EMBL:KDO75360.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75360.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75360.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75360.1; -; Genomic_DNA. DR RefSeq; XP_006468258.1; XM_006468195.2. DR GeneID; 102620318; -. DR KEGG; cit:102620318; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99396 MW; 270C648D9ACE4D70 CRC64; MRLSTAGFSP QHQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGTLS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PPTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYSSPFP LRLKRPWPVG LPAFHGIKDE DLGINSQLMW LRGDGDRGMQ SLNFQGLGVT PWMQPRMDAS MLGLQNDMYQ AMAAAALREM RAVDPSKPNA ASLMQFQQPQ NLPSRTSALV QSQMLQQSHP QQTFLQGVQE NQHQSQSQTH SQSHLLQPQL QHSHSFNNQQ QQPLPQPQQQ VDHQQIPSAV SAMSQFASVS QSQSPPMQAI SSLCQQQSFS DSNGNPATNP IVSPLHSLLG SYAQDESSHL LNLPRSNPLI HSPTWPSKRA AVEPLFSSGA PQCVLPSVEQ LGPPHANISQ NSISLPPFPG RECSIDQEGS ADPQSHLLFG VNIEPSSLLM QNEMSSLGGV GSNSDSTTIP FASSNYMSTA GADFSVNPEI APSSCIDESG FLQSPENVGQ VNPPNRTFVK VYKSGSFGRS LDITKFSSYH ELRSELARMF GLEGHLEDPL RSGWQLVFVD RENDVLLLGD GPWPEFVNSV WCIKILSPPE VQQMGKRGNE LLNSVPIQRL SNSSCDDYAT RQDSRNLSAG ITSVGSLDF // ID A0A067GA94_CITSI Unreviewed; 684 AA. AC A0A067GA94; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005491mg {ECO:0000313|EMBL:KDO76593.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO76593.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO76593.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784881; KDO76593.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 684 AA; 76728 MW; E38A0AEFC3A68203 CRC64; MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGQRV YYFPQGHMEQ LEASTNQELN QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELHVG VRCLARQQSS MPSSVISSQS MHLGVLATAS HAVATQTMFV VYYKPRTSQF IISLNKYLEA VNNKFAVGMR YKMRFEGEDS PERRFSGTVV GVEDFSPHWK DSKWRSLKVQ WDEPASITRP DRVSPWEIEP FVASATPNLV QPVLAKNKRP RLSMEVPPLD LPSAASAPWS ARLAQSHNLT QLSVTAEDKR IDNHVAWHHK HSDFSSNSNF MSRTQSDGEW LTSPRVKFSQ QLFQEAIDDN KNISAWPAHS GHSTPHPSKP NNDTLLEQVE TGRKTETGTS CRLFGIELIN HATSSAPSEK VPVSSLTTEG HIISTISAAA DSDGKSDIAK EFKEKKQEQV QVSPKESQSK QSCLTSNRSR TKVQMQGVAV GRALDLTTLV GYDHLIDELE EMFDIKGQLH TRTKWEIVYT DDEGDMMLVG DDPWHEFCNM VKRIFICSSQ DVKKMSPGSK LPMFSIEGFG LFLG // ID A0A067GA99_CITSI Unreviewed; 537 AA. AC A0A067GA99; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005491mg {ECO:0000313|EMBL:KDO76598.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO76598.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO76598.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784881; KDO76598.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 425 506 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 537 AA; 60332 MW; E97F14F3DD211AB9 CRC64; MNQSTPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDTFVFLRGE NGELHVGVRC LARQQSSMPS SVISSQSMHL GVLATASHAV ATQTMFVVYY KPRTSQFIIS LNKYLEAVNN KFAVGMRYKM RFEGEDSPER RFSGTVVGVE DFSPHWKDSK WRSLKVQWDE PASITRPDRV SPWEIEPFVA SATPNLVQPV LAKNKRPRLS MEVPPLDLPS AASAPWSARL AQSHNLTQLS VTAEDKRIDN HVAWHHKHSD FSSNSNFMSR TQSDGEWLTS PRVKFSQQLF QEAIDDNKNI SAWPAHSGHS TPHPSKPNND TLLEQVETGR KTETGTSCRL FGIELINHAT SSAPSEKVPV SSLTTEGHII STISAAADSD GKSDIAKEFK EKKQEQVQVS PKESQSKQSC LTSNRSRTKV QMQGVAVGRA LDLTTLVGYD HLIDELEEMF DIKGQLHTRT KWEIVYTDDE GDMMLVGDDP WHEFCNMVKR IFICSSQDVK KMSPGSKLPM FSIEGEDILL SSDSAEK // ID A0A067GAH0_CITSI Unreviewed; 694 AA. AC A0A067GAH0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005491mg {ECO:0000313|EMBL:KDO76594.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO76594.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO76594.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784881; KDO76594.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 582 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 77865 MW; 71CD64477AE2DB78 CRC64; MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGQRV YYFPQGHMEQ LEASTNQELN QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELHVG VRCLARQQSS MPSSVISSQS MHLGVLATAS HAVATQTMFV VYYKPRIITR TSQFIISLNK YLEAVNNKFA VGMRYKMRFE GEDSPERRFS GTVVGVEDFS PHWKDSKWRS LKVQWDEPAS ITRPDRVSPW EIEPFVASAT PNLVQPVLAK NKRPRLSMEV PPLDLPSAAS APWSARLAQS HNLTQLSVTA EDKRIDNHVA WHHKHSDFSS NSNFMSRTQS DGEWLTSPRV KFSQQLFQEA IDDNKNISAW PAHSGHSTPH PSKPNNDTLL EQVETGRKTE TGTSCRLFGI ELINHATSSA PSEKVPVSSL TTEGHIISTI SAAADSDGKS DIAKEFKEKK QEQVQVSPKE SQSKQSCLTS NRSRTKVQMQ GVAVGRALDL TTLVGYDHLI DELEEMFDIK GQLHTRTKWE IVYTDDEGDM MLVGDDPWHE FCNMVKRIFI CSSQDVKKMS PGSKLPMFSI EGEDILLSSD SAEK // ID A0A067GAU5_CITSI Unreviewed; 899 AA. AC A0A067GAU5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75745.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75745.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75745.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75745.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75745.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 578 628 CW-type. {ECO:0000259|PROSITE:PS51050}. SQ SEQUENCE 899 AA; 98975 MW; 16331963D173F101 CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI GNQPKSQESY EMFSFMWKDN EANKAGTGIP ANGHAELADP SSWSKVDKSG YIATEALGAK SSISRKRKNT TLGSKSKRLK IENEDVIELK LTWEEAQGLL RPPPNNVPSV VVIEGYEFEE YEDAPILGKP TIFATDNVGE KIQWVQCEDC SKWRKVPANA RLPSKWTCSG NLWDPERSVC SVAQELREEQ LEDLIAPNNP ASSKKLKAAK QEPDCVEALE GLDTLANLAI LGEGEGLTAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCL TVKRRFHTLM LRREKKQSEK DAETSRKKQQ QQKLPVPEKS ADDDPLSCSK TGNNSPNEKK VVSEGSDDDS SRIKSSTSPF KGQIDLNIQP EREEELSPGS DSGSMIRLLQ DATEKYLRQQ RLSSSGVNTS SVDNEGLQGG VTGEKISNGI TLDGSHQDTD EDHHGSLSVK ASASISATG // ID A0A067GAV1_CITSI Unreviewed; 588 AA. AC A0A067GAV1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75750.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75750.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75750.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75750.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75750.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 359 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 359 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 588 AA; 64822 MW; 6993A845B4FDAB89 CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDNVG // ID A0A067GB15_CITSI Unreviewed; 440 AA. AC A0A067GB15; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO76784.1}; GN ORFNames=CISIN_1g013565mg {ECO:0000313|EMBL:KDO76784.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO76784.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO76784.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784881; KDO76784.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 440 AA; 49198 MW; 5A5021058075ECCB CRC64; MIGIDYEMGN IISNTGSNQA VKLHFSTTYA SNSSSSPSSA SSHHHHYTTQ TQQLLPLTTH HQNYNKQQQP QMGSWLLGKT TTTTTAAELE DVSNEEETAA PTKEQAIIMQ ETKDIIEEGE AEEDRVLISL EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK YFPLDSSSNE KGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDVVS FHRGVGDLAK GRLFIDWRRR SHPPAAAAAS FSRHLPFYRS IPWNPLLMMR PPVLPASMYS QSQINNNFYN RNSISLGGTG NNNNVLSTRT LGSILYLRSQ LPAAPATQQP PPPPPPPHTE IGMTKWQQHP IVFDSVPVVQ GKATAKRLRL FGVNMDCPIT ESDDECHILS SSTSIQHATM AIHDQPSQLS SSSQLSLYDA TPLLPPFDFL NKGKASMSFD // ID A0A067GCK9_CITSI Unreviewed; 809 AA. AC A0A067GCK9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003580mg {ECO:0000313|EMBL:KDO73197.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73197.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73197.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784886; KDO73197.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 679 762 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 172 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 809 AA; 89728 MW; F2AF71C0B00E222B CRC64; MEFDLNHAAT TEGEKIAFCN GDCGKNNSGC VCYLNSSSSS SSCSANSSSS SSLSSSIYFE LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASSSAFPPIE VPNFDLQPQI FCKVVDVQLL ANKENDEVYT QVALLPQPEL EGLNLEAKQL EDLGVDEEGG GRSPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GKDGELRLGI RRSVQPRNGL PDSILSKQNS YPNVLSVVAN AVSTKSMFHV FYSPRATHAD FVIPYQKYVK IIMNPICIGT RFKMRFEMDD SPERRCNGVV TGITDLDPYR WPNSKWRCLM VRWDECIGSD HQEQVSPWEI DRSVSLPPLS IQSSPRMKKL RTGLQAPPPD YPVSARGGGV LDFEESVRSS KVLQGQENVG FVSPLYGCDT VNHPLGFEMR APAHQSLALN GIRKDNINEL VRALPTSYTG FVESNRFPKV LQGQEICPLR SLTGKVDLNL GTWGKPNFGC NSMNMYQASK PNIYPPPSES LSNMFFPYGD MPKTVQHHTM PPYASNLQRE NVKLNSSSIQ MPAIGAEIRK ANLLNEHKPV ENIPTPTFKA NMRSHKDGSF NGTAAGCKLF GFSLTSETPT PSSQSPGKRS CTKVHKQGSL VGRAIDLWRL NGYNDLLSEL EHLFNMEGLL RDPAKGWRIL YTDSENDVMV VGDDPWHSEF CNEVSKIHIY TQEEVEKMTI GTTDDTQSCL DQAPVIMEVS VSKSSSVSQP DSSPTVVRV // ID A0A067GCZ5_CITSI Unreviewed; 808 AA. AC A0A067GCZ5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g003580mg {ECO:0000313|EMBL:KDO73196.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73196.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73196.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784886; KDO73196.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 679 761 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 172 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 808 AA; 89641 MW; 6A15DD811F358AFA CRC64; MEFDLNHAAT TEGEKIAFCN GDCGKNNSGC VCYLNSSSSS SSCSANSSSS SSLSSSIYFE LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASSSAFPPIE VPNFDLQPQI FCKVVDVQLL ANKENDEVYT QVALLPQPEL EGLNLEAKQL EDLGVDEEGG GRSPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GKDGELRLGI RRSVQPRNGL PDSILSKQNS YPNVLSVVAN AVSTKSMFHV FYSPRATHAD FVIPYQKYVK IIMNPICIGT RFKMRFEMDD SPERRCNGVV TGITDLDPYR WPNSKWRCLM VRWDECIGSD HQEQVSPWEI DRSVSLPPLS IQSSPRMKKL RTGLQAPPPD YPVSARGGGV LDFEESVRSS KVLQGQENVG FVSPLYGCDT VNHPLGFEMR APAHQSLALN GIRKDNINEL VRALPTSYTG FVESNRFPKV LQGQEICPLR SLTGKVDLNL GTWGKPNFGC NSMNMYQASK PNIYPPPSES LSNMFFPYGD MPKTVQHHTM PPYASNLQRE NVKLNSSSIQ MPAIGAEIRK ANLLNEHKPV ENIPTPTFKA NMRSHKDGSF NGTAAGCKLF GFSLTSETPT PSSQSPGKRS CTKVHKQGSL VGRAIDLWRL NGYNDLLSEL EHLFNMEGLL RDPAKGWRIL YTDSENDVMV VGDDPWHEFC NEVSKIHIYT QEEVEKMTIG TTDDTQSCLD QAPVIMEVSV SKSSSVSQPD SSPTVVRV // ID A0A067GD79_CITSI Unreviewed; 690 AA. AC A0A067GD79; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005491mg {ECO:0000313|EMBL:KDO76595.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO76595.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO76595.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784881; KDO76595.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 690 AA; 77381 MW; 65F669320ED7FE4A CRC64; MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGQRV YYFPQGHMEQ LEASTNQELN QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELHVG VRCLARQQSS MPSSVISSQS MHLGVLATAS HAVATQTMFV VYYKPRTSQF IISLNKYLEA VNNKFAVGMR YKMRFEGEDS PERRFSGTVV GVEDFSPHWK DSKWRSLKVQ WDEPASITRP DRVSPWEIEP FVASATPNLV QPVLAKNKRP RLSMEVPPLD LPSAASAPWS ARLAQSHNLT QLSVTAEDKR IDNHVAWHHK HSDFSSNSNF MSRTQSDGEW LTSPRVKFSQ QLFQEAIDDN KNISAWPAHS GHSTPHPSKP NNDTLLEQVE TGRKTETGTS CRLFGIELIN HATSSAPSEK VPVSSLTTEG HIISTISAAA DSDGKSDIAK EFKEKKQEQV QVSPKESQSK QSCLTSNRSR TKVQMQGVAV GRALDLTTLV GYDHLIDELE EMFDIKGQLH TRTKWEIVYT DDEGDMMLVG DDPWHEFCNM VKRIFICSSQ DVKKMSPGSK LPMFSIEGED ILLSSDSAEK // ID A0A067GDS4_CITSI Unreviewed; 746 AA. AC A0A067GDS4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004106mg {ECO:0000313|EMBL:KDO77719.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO77719.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO77719.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784879; KDO77719.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 746 AA; 80720 MW; 4A6FEA7DE482788C CRC64; MVGLIDLNTT EDDENPSSGS LSPSSSSASA LSASGFALAP APASASASAS GVSLELWHAC AGPLISLPKR GSVVVYFPQG HLEHVSDFSA AASAAYDLPP HPFCRVADVK LHAEAASDEV YAQVSLVPDE LIEQKVREGK IEDGDEDSVE VVAKSSTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG EDGELRLGIR RAPHVKSGAT FPSFCSQQSS PNSVTEVVDA IARKRAFSIS YNPRASASEF IIPVNKFLKS LDHSFAVGMR FKMRFETDDA AERRYTGVIM GVGDVDPVRW PGSKWRCLLV RWDDVESNRH TRVSPWEIEP SGSVCGSNNL ITSGLKRTRI GLPSGKPEFP VPDGIGVTDF GESLRFQKVL QGQEILGFNT LYDGGDCQNL HPSEVRRGIL GSNGSGIAAI GDGSRNLQVK SDISYKGIGI GFGESFRFHK VLQGQEIFPK SPYGRAPTNN EARGIGSLGI SDGVLVSGSR NRWSAVVPGY NTHTSPSAPP VQVSSPSSVL MFQLASNPIS NYNPPYSLND QEKEQRVNCQ SFFHNSEIYG GKHASSSFLD HSFRGGDQEV MDSIGQSNEH ISPPLVGQPT VRGSQDLVSS CKGSCRLFGF SLTEERHVAN IEDNAAPVAS PLNPRSSFLS HVGQQFHPKP PVMSKATGSN CTNGIMQHCL GNYDIY // ID A0A067GEF9_CITSI Unreviewed; 995 AA. AC A0A067GEF9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001728mg {ECO:0000313|EMBL:KDO73827.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73827.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73827.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784885; KDO73827.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 995 AA; 111490 MW; 3FACD21471E8BBE4 CRC64; MACLCRATGF FASSWKPGCL LPSRPQRVAA SMQKENDFIP NYPNLPSKLI CMLHSVTLHA DPETDEVYAQ MTLQPVNKYE KEAILASDMG LKQNRQPTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DYSMQPPAQE IVARDLHDTT WTFRHIYRGQ PKRHLLTTGW SVFVSTKRLF AGDSVLFIRD EKSQLLLGIR RANRQQPALS SSVISSDSMH IGILAAAAHA AANNSPFTIF YNPRASPSEF VIPLAKYNKA MYTQVSLGMR FRMMFETEES GVRRYMGTIT SISDLDPLRW KNSQWRNLQV GWDESTAGER PSRVSLWETE PVVTPFYICP PPFFRPKFPK QPGMPDDESD IENAFKRAMP WLGDDFGMKD ATSSIFPGLS LVQWMSMQQN NQFPAAQSGF FPSMVSSTGL HSNFGTDDPS KLLNFQASAL AAPNLQFSKA NPQNQVNQLP QSPIAWTQQQ QLQHLLQNPL NQQQQQHPQL HQQRQQQQQL LHPQQSQQQQ QQQQNHHHHN QQPPPPPQLQ PSPTPPHSQS QSQSPVPQRP QQQPQQQQQQ PQQQIFLPTH VNNGVLVPNA NQNVQQPTVY SQLQQPQLLT SNTQAPQGIL SNNKNSYQLT SLPQDSQFQQ QMEQSTGPLQ RQQQQSQLQQ SSLQFLQQSL AQRAQQQPQV QQLAQQSMSD QQLQSQLQQK LQQQQQQQLL SPAGSLLQPQ LLQQQLAHQQ NQQLSQLPPS QNHQQQLSNN LSASVLVQPQ QLPMNQPQNQ NRPLTGTRAH SNHTDGDAPS CSTSPSSNNC QISPSNFLNR NQQGPAMLMG DSVVEPSSNL VQELHSKSDA RIKHELPISK GPEHLKYNGS MTDQVEASSS GTSYCLDPGN IQQNFSLPTY CLDGDTQSHP RNSLPFVANI DGMAPDTLLS RGYDSQKDLH NLLSNYGGTP RDIETELSTA AISSQSFAVP NIPFKPACSN EVGINEAGVL GNGLWANQTQ RMRTFTKVCY AIYSL // ID A0A067GEP4_CITSI Unreviewed; 1009 AA. AC A0A067GEP4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g001728mg {ECO:0000313|EMBL:KDO73826.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO73826.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO73826.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784885; KDO73826.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1009 AA; 112951 MW; 6F18AD8F74C1686D CRC64; MIPGERKTIN SELWHACAGP LVSLPPVGSL VVYFPQGHSE QVAASMQKEN DFIPNYPNLP SKLICMLHSV TLHADPETDE VYAQMTLQPV NKYEKEAILA SDMGLKQNRQ PTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDYSMQP PAQEIVARDL HDTTWTFRHI YRGQPKRHLL TTGWSVFVST KRLFAGDSVL FIRDEKSQLL LGIRRANRQQ PALSSSVISS DSMHIGILAA AAHAAANNSP FTIFYNPRAS PSEFVIPLAK YNKAMYTQVS LGMRFRMMFE TEESGVRRYM GTITSISDLD PLRWKNSQWR NLQVGWDEST AGERPSRVSL WETEPVVTPF YICPPPFFRP KFPKQPGMPD DESDIENAFK RAMPWLGDDF GMKDATSSIF PGLSLVQWMS MQQNNQFPAA QSGFFPSMVS STGLHSNFGT DDPSKLLNFQ ASALAAPNLQ FSKANPQNQV NQLPQSPIAW TQQQQLQHLL QNPLNQQQQQ HPQLHQQRQQ QQQLLHPQQS QQQQQQQQNH HHHNQQPPPP PQLQPSPTPP HSQSQSQSPV PQRPQQQPQQ QQQQPQQQIF LPTHVNNGVL VPNANQNVQQ PTVYSQLQQP QLLTSNTQAP QGILSNNKNS YQLTSLPQDS QFQQQMEQST GPLQRQQQQS QLQQSSLQFL QQSLAQRAQQ QPQVQQLAQQ SMSDQQLQSQ LQQKLQQQQQ QQLLSPAGSL LQPQLLQQQL AHQQNQQLSQ LPPSQNHQQQ LSNNLSASVL VQPQQLPMNQ PQNQNRPLTG TRAHSNHTDG DAPSCSTSPS SNNCQISPSN FLNRNQQGPA MLMGDSVVEP SSNLVQELHS KSDARIKHEL PISKGPEHLK YNGSMTDQVE ASSSGTSYCL DPGNIQQNFS LPTYCLDGDT QSHPRNSLPF VANIDGMAPD TLLSRGYDSQ KDLHNLLSNY GGTPRDIETE LSTAAISSQS FAVPNIPFKP ACSNEVGINE AGVLGNGLWA NQTQRMRTFT KVCYAIYSL // ID A0A067GGF1_CITSI Unreviewed; 749 AA. AC A0A067GGF1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004106mg {ECO:0000313|EMBL:KDO77720.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO77720.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO77720.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784879; KDO77720.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 749 AA; 80998 MW; 326C73A86E4933CD CRC64; MVGLIDLNTT EDDENPSSGS LSPSSSSASA LSASGFALAP APASASASAS GVSLELWHAC AGPLISLPKR GSVVVYFPQG HLEHVSDFSA AASAAYDLPP HPFCRVADVK LHAEAASDEV YAQVSLVPDE LIEQKVREGK IEDGDEDSVE VVAKSSTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG EDGELRLGIR RAPHVKSGAT FPSFCSQQSS PNSVTEVVDA IARKRAFSIS YNPRASASEF IIPVNKFLKS LDHSFAVGMR FKMRFETDDA AERRYTGVIM GVGDVDPVRW PGSKWRCLLV RWDDVESNRH TRVSPWEIEP SGSVCGSNNL ITSGLKRTRI GLPSGKPEFP VPDGIGVTDF GESLRFQKVL QGQEILGFNT LYDGGDCQNL HPSEVRRGIL GSNGSGIAAI GDGSRNLQVK SDISYKGIGI GFGESFRFHK VLQGQEIFPK SPYGRAPTNN EARGIGSLGI SDGVLVSGSR NRWSAVVPGY NTHTSPSAPP VQVSSPSSVL MFQLASNPIS NYNPPYSLND QEKEQRVNCQ SFFHNSEIYG GKHASSSFLD HSFRGGDQEV MDSIGQSNEH ISPPLVGQPT VRGSQDLVSS CKGSCRLFGF SLTEERHVAN IEDNAAPVAS PLNPRSSFLS HVGQQFHPKP PVMSKATGSN CTNVSNHCAV RDMLFDIAL // ID A0A067GI12_CITSI Unreviewed; 516 AA. AC A0A067GI12; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO79249.1}; GN ORFNames=CISIN_1g010160mg {ECO:0000313|EMBL:KDO79249.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO79249.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO79249.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784878; KDO79249.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 144 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 459 486 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 516 AA; 57388 MW; 5A75101FC1DE9DB9 CRC64; MDLELEVKKE VVDEHVNTTS HRSEAARPTD DEEATIAQLS LLPASSKPKR KRKPKTIFSA DEPMKPSKKK GKIILKLKKS PPDTSVTSVP GTVEPDSRAG GKTKSSKKNK DVVDGKCSPV EPKSPAMIRA EEVQSNLEPQ FPSFAKSMVR SHVASCFWMG LPGYFCKSHL PDKDTSVVLE DESGIQYTAK YFAEKTGLSA GWRQFSTAHN LVEGDVLVFQ LIAPLKLKVY IIRANDFTEV DGALGLLNLD APSKQNDTAE LEIDNGEPIV VANQNTKKKR KKSLPLAVVQ KKNKKSVQGR SASNLGQPAE QSENDSEEVG SEVLEGFKIS TPPVQFKDVT SLDNFNILVD GLVVDSELPE DIRCNYYKLC CSQNAFLHEN LAQGINFKLI VGTISEIVNI ADALRACKFT TSRDEFAMWD KTLKAFELLG MSVGFLRARL RRLQRLAFES EGAEDTRRYI EAKAQQSQTQ DEIRNIEARL VELKGAWQRF DAEISSLKSS AESYELKFRE VANAPW // ID A0A067GIB5_CITSI Unreviewed; 278 AA. AC A0A067GIB5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO79379.1}; GN ORFNames=CISIN_1g023721mg {ECO:0000313|EMBL:KDO79379.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO79379.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO79379.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784878; KDO79379.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31651 MW; 0696538DC444DB00 CRC64; MKAIPPAFAK HLNVTVPKHV IIRDYAGRQW RGKMEEVEGV IVIKDCWERF ACVHSLELGD FLVFKYNGSS LFDVKIYGIN GCLKEGTNTT HHKKETPIAD MNAIPVKKEI GREAEQTSIM DDPSCNQDDL EIMLISSGKR GGSSVASRVK TRLRDEKDTG EDRAFKAARL VVPKNPHFVS VFSQYSRYAV NVSVRVVRSH GIKLEPEMML RDQNGRKWPV KISFRTNGRI VITGGWSDFW REQKLEAGDK CVFEFVLTRG NMSKEMKVQV VRKMKTCL // ID A0A067GJ46_CITSI Unreviewed; 834 AA. AC A0A067GJ46; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g002624mg {ECO:0000313|EMBL:KDO75361.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75361.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75361.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75361.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 834 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 834 AA; 92241 MW; 38D3AFDEB63D8FEC CRC64; MRLSTAGFSP QHQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGTLS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PPTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYSSPFP LRLKRPWPVG LPAFHGIKDE DLGINSQLMW LRGDGDRGMQ SLNFQGLGVT PWMQPRMDAS MLGLQNDMYQ AMAAAALREM RAVDPSKPNA ASLMQFQQPQ NLPSRTSALV QSQMLQQSHP QQTFLQGVQE NQHQSQSQTH SQSHLLQPQL QHSHSFNNQQ QQPLPQPQQQ VDHQQIPSAV SAMSQFASVS QSQSPPMQAI SSLCQQQSFS DSNGNPATNP IVSPLHSLLG SYAQDESSHL LNLPRSNPLI HSPTWPSKRA AVEPLFSSGA PQCVLPSVEQ LGPPHANISQ NSISLPPFPG RECSIDQEGS ADPQSHLLFG VNIEPSSLLM QNEMSSLGGV GSNSDSTTIP FASSNYMSTA GADFSVNPEI APSSCIDESG FLQSPENVGQ VNPPNRTFVK VYKSGSFGRS LDITKFSSYH ELRSELARMF GLEGHLEDPL RSGWQLVFVD RENDVLLLGD GPWP // ID A0A067GK15_CITSI Unreviewed; 653 AA. AC A0A067GK15; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75747.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75747.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75747.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75747.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75747.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 359 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 642 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 359 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 653 AA; 72692 MW; F871106D8160DDBB CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDNVGEK IQWVQCEDCS KWRKVPANAR LPSKWTCSGN LWDPERYNQH LVICLNPDIF IYLPRLRIFF FFG // ID A0A067GK19_CITSI Unreviewed; 465 AA. AC A0A067GK19; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 12-APR-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75752.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75752.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75752.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75752.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75752.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 359 448 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 465 AA; 51854 MW; 6C63D3317A18F0DA CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI GNQPKSQESY EMFSFMWKVH VHALN // ID A0A067GK21_CITSI Unreviewed; 668 AA. AC A0A067GK21; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75757.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75757.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75757.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75757.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75757.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 347 397 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 119 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 668 AA; 72923 MW; 5896C1AD6F88CA78 CRC64; MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDNVGEK IQWVQCEDCS KWRKVPANAR LPSKWTCSGN LWDPERSVCS VAQELREEQL EDLIAPNNPA SSKKLKAAKQ EPDCVEALEG LDTLANLAIL GEGEGLTASS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCLT VKRRFHTLML RREKKQSEKD AETSRKKQQQ QKLPVPEKSA DDDPLSCSKT GNNSPNEKKV VSEGSDDDSS RIKSSTSPFK GQIDLNIQPE REEELSPGSD SGSMIRLLQD ATEKYLRQQR LSSSGVNTSS VDNEGLQGGV TGEKISNGIT LDGSHQDTDE DHHGSLSVKA SASISATG // ID A0A067GKC2_CITSI Unreviewed; 908 AA. AC A0A067GKC2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75746.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75746.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75746.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75746.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75746.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 359 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 637 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 359 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 99650 MW; B6CAE5E92F07471B CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDNVGEK IQWVQCEDCS KWRKVPANAR LPSKWTCSGN LWDPERSVCS VAQELREEQL EDLIAPNNPA SSKKLKAAKQ EPDCVEALEG LDTLANLAIL GEGEGLTASS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCLT VKRRFHTLML RREKKQSEKD AETSRKKQQQ QKLPVPEKSA DDDPLSCSKT GNNSPNEKKV VSEGSDDDSS RIKSSTSPFK GQIDLNIQPE REEELSPGSD SGSMIRLLQD ATEKYLRQQR LSSSGVNTSS VDNEGLQGGV TGEKISNGIT LDGSHQDTDE DHHGSLSVKA SASISATG // ID A0A067GKC3_CITSI Unreviewed; 585 AA. AC A0A067GKC3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75751.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75751.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75751.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75751.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75751.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 65 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 359 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 359 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 585 AA; 64779 MW; B6BBCF0D8FFAD4F6 CRC64; MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EVPYLTRSFF CSKHT // ID A0A067GKC6_CITSI Unreviewed; 691 AA. AC A0A067GKC6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO75756.1}; GN ORFNames=CISIN_1g002489mg {ECO:0000313|EMBL:KDO75756.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO75756.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO75756.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784882; KDO75755.1; -; Genomic_DNA. DR EMBL; KK784882; KDO75756.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 420 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 142 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 75212 MW; 412932A4A6FF48F0 CRC64; MNGGLKSGSR DIPENANAGS NCDMQPSSCL NKPQQSSTLK DDSSTPHFGL AVSYASPSET NSQIGVSGSH LRPVVQPPLV KQFHGNLPNG ADSLGETQVR NGRPRVDARG RSQLLPRYWP RFTDQDLQQI SGDSNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDIVTFSRLE PEGKLVMGFR KASSASASDQ DNEANKAGTG IPANGHAELA DPSSWSKVDK SGYIATEALG AKSSISRKRK NTTLGSKSKR LKIENEDVIE LKLTWEEAQG LLRPPPNNVP SVVVIEGYEF EEYEDAPILG KPTIFATDNV GEKIQWVQCE DCSKWRKVPA NARLPSKWTC SGNLWDPERS VCSVAQELRE EQLEDLIAPN NPASSKKLKA AKQEPDCVEA LEGLDTLANL AILGEGEGLT ASSQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CLTVKRRFHT LMLRREKKQS EKDAETSRKK QQQQKLPVPE KSADDDPLSC SKTGNNSPNE KKVVSEGSDD DSSRIKSSTS PFKGQIDLNI QPEREEELSP GSDSGSMIRL LQDATEKYLR QQRLSSSGVN TSSVDNEGLQ GGVTGEKISN GITLDGSHQD TDEDHHGSLS VKASASISAT G // ID A0A067GKR4_CITSI Unreviewed; 453 AA. AC A0A067GKR4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO79250.1}; GN ORFNames=CISIN_1g010160mg {ECO:0000313|EMBL:KDO79250.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO79250.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO79250.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784878; KDO79250.1; -; Genomic_DNA. DR EMBL; KK784878; KDO79251.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 396 423 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 453 AA; 50334 MW; DC290CABA3086C8B CRC64; MKPSKKKGKI ILKLKKSPPD TSVTSVPGTV EPDSRAGGKT KSSKKNKDVV DGKCSPVEPK SPAMIRAEEV QSNLEPQFPS FAKSMVRSHV ASCFWMGLPG YFCKSHLPDK DTSVVLEDES GIQYTAKYFA EKTGLSAGWR QFSTAHNLVE GDVLVFQLIA PLKLKVYIIR ANDFTEVDGA LGLLNLDAPS KQNDTAELEI DNGEPIVVAN QNTKKKRKKS LPLAVVQKKN KKSVQGRSAS NLGQPAEQSE NDSEEVGSEV LEGFKISTPP VQFKDVTSLD NFNILVDGLV VDSELPEDIR CNYYKLCCSQ NAFLHENLAQ GINFKLIVGT ISEIVNIADA LRACKFTTSR DEFAMWDKTL KAFELLGMSV GFLRARLRRL QRLAFESEGA EDTRRYIEAK AQQSQTQDEI RNIEARLVEL KGAWQRFDAE ISSLKSSAES YELKFREVAN APW // ID A0A067GME9_CITSI Unreviewed; 609 AA. AC A0A067GME9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005491mg {ECO:0000313|EMBL:KDO76597.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO76597.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO76597.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784881; KDO76597.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 497 578 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 42 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 609 AA; 68132 MW; 0054F7D8A0F139D6 CRC64; MAEQETDEVY AQITLLPEPS QNEPTTPDPC PADSPRPKVH SFSKVLTASD TSTHGGFSVL RKHATECLPP LDMNQSTPTQ ELVAKDLHGY EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDTFVFLR GENGELHVGV RCLARQQSSM PSSVISSQSM HLGVLATASH AVATQTMFVV YYKPRTSQFI ISLNKYLEAV NNKFAVGMRY KMRFEGEDSP ERRFSGTVVG VEDFSPHWKD SKWRSLKVQW DEPASITRPD RVSPWEIEPF VASATPNLVQ PVLAKNKRPR LSMEVPPLDL PSAASAPWSA RLAQSHNLTQ LSVTAEDKRI DNHVAWHHKH SDFSSNSNFM SRTQSDGEWL TSPRVKFSQQ LFQEAIDDNK NISAWPAHSG HSTPHPSKPN NDTLLEQVET GRKTETGTSC RLFGIELINH ATSSAPSEKV PVSSLTTEGH IISTISAAAD SDGKSDIAKE FKEKKQEQVQ VSPKESQSKQ SCLTSNRSRT KVQMQGVAVG RALDLTTLVG YDHLIDELEE MFDIKGQLHT RTKWEIVYTD DEGDMMLVGD DPWHEFCNMV KRIFICSSQD VKKMSPGSKL PMFSIEGEDI LLSSDSAEK // ID A0A067GMP5_CITSI Unreviewed; 643 AA. AC A0A067GMP5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005491mg {ECO:0000313|EMBL:KDO76596.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO76596.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO76596.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784881; KDO76596.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 531 612 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 643 AA; 72118 MW; 6E3646150DD3E01D CRC64; MEQLEASTNQ ELNQRIPLFR LPSKILCRVV NIHLMAEQET DEVYAQITLL PEPSQNEPTT PDPCPADSPR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMNQS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGENGEL HVGVRCLARQ QSSMPSSVIS SQSMHLGVLA TASHAVATQT MFVVYYKPRT SQFIISLNKY LEAVNNKFAV GMRYKMRFEG EDSPERRFSG TVVGVEDFSP HWKDSKWRSL KVQWDEPASI TRPDRVSPWE IEPFVASATP NLVQPVLAKN KRPRLSMEVP PLDLPSAASA PWSARLAQSH NLTQLSVTAE DKRIDNHVAW HHKHSDFSSN SNFMSRTQSD GEWLTSPRVK FSQQLFQEAI DDNKNISAWP AHSGHSTPHP SKPNNDTLLE QVETGRKTET GTSCRLFGIE LINHATSSAP SEKVPVSSLT TEGHIISTIS AAADSDGKSD IAKEFKEKKQ EQVQVSPKES QSKQSCLTSN RSRTKVQMQG VAVGRALDLT TLVGYDHLID ELEEMFDIKG QLHTRTKWEI VYTDDEGDMM LVGDDPWHEF CNMVKRIFIC SSQDVKKMSP GSKLPMFSIE GEDILLSSDS AEK // ID A0A067GQ76_CITSI Unreviewed; 578 AA. AC A0A067GQ76; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g008078mg {ECO:0000313|EMBL:KDO80835.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO80835.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO80835.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784876; KDO80834.1; -; Genomic_DNA. DR EMBL; KK784876; KDO80835.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 63867 MW; 2F5A8D106A89D69A CRC64; MPSQQPYSPA EPRAVDPRIW RACAGSSVQI PSVNSRVYYF PQGHVEQSCP SITLSVTKPF IPCLITHVEF LADPVTDQVF AKVVLNPITA LEPSRNFLEQ QQEQQPRGLS IGNVEENNVV AFAKILTPSD ANNGGGFSVP RFCADSIFPP LNYQVDPPVQ NISVTDIHGA VWEFRHIYRG TPRRHLLTTG WSKFVNRKKL IAGDSVVFMR DSRGKMYIGL RRSVRYGNNG DSAGARWREQ TGMKAEAVAV AVERAVLGLP FEVVYYPRAG WADFIVRAEV VDSAMRVFWT AGMRVKMVVE TEDSSRMTWI QGTVTAASMP DRGPWCGSPW GMLEVTWDEP EILQNAKRVS PWQIEFVSPT QPLHTAFPPA KRLKFSPNYG SMTDVEEEIF FPVNGLGNST VGCLNPSLLN YNTFPAGMQG ARQNPYSLFS LSNFISENNH QMSSDGIFGN NMVPKLRRVS TELNIGSSQS DNLSPDSHSS VHSFGTELGG NQGCNSTKVG VRSIQLFGKI IHMKQPVESG FGDVVCPDDD GSKGFSERED VNLPLDLSLT YTELLNRFGI QGRGSEVEDE VVAEACSL // ID A0A067GQL6_CITSI Unreviewed; 386 AA. AC A0A067GQL6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO77616.1}; GN ORFNames=CISIN_1g039100mg {ECO:0000313|EMBL:KDO77616.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO77616.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO77616.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784879; KDO77616.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 386 AA; 43313 MW; 804F61FCF2E2EF0B CRC64; MQFPSTFPLD QSGGQSFAVA AAAPYPVYPF WLAQNGIQNG GGNNAIPAAA GSWSLQPNIR VPKEPQRVVL DPQKTKIARI KRKLARQKSL SLQRNASSGA SSSNVPSSAH FDATRLPTYG VDTHRDLFNF CTPDNKRLRV LLQKALKNSD VGSLGRIILP KREAEENLPS LSDKEGIHIV IRDVYSDKHW TLKFKYWSNN KSRIQFSSSV STFSRFRYTV DFVKQNGLEI GDSLTLYEDE SKNLGQYFSV KKVERPEPAA EPSYKQQNYD FFPAANQTPT PIMHQARDEE EASLALLIEQ LRHKEQQETY YNLMTLPLDD HEEANNVVRA SNNATSSGIH AHLAATSSSS HGAKMNNPEY DHHQTVDDCY SCLDMLPDVD TYNFSI // ID A0A067GQQ1_CITSI Unreviewed; 753 AA. AC A0A067GQQ1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004106mg {ECO:0000313|EMBL:KDO77722.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO77722.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO77722.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784879; KDO77722.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 753 AA; 81398 MW; DD8C65102A6D9EDE CRC64; MVGLIDLNTT EDDENPSSGS LSPSSSSASA LSASGFALAP APASASASAS GVSLELWHAC AGPLISLPKR GSVVVYFPQG HLEHVSDFSA AASAAYDLPP HPFCRVADVK LHAEAASDEV YAQVSLVPDE LIEQKVREGK IEDGDEDSVE VVAKSSTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG EDGELRLGIR RAPHVKSGAT FPSFCSQQSS PNSVTEVVDA IARKRAFSIS YNPSPLCRAS ASEFIIPVNK FLKSLDHSFA VGMRFKMRFE TDDAAERRYT GVIMGVGDVD PVRWPGSKWR CLLVRWDDVE SNRHTRVSPW EIEPSGSVCG SNNLITSGLK RTRIGLPSGK PEFPVPDGIG VTDFGESLRF QKVLQGQEIL GFNTLYDGGD CQNLHPSEVR RGILGSNGSG IAAIGDGSRN LQVKSDISYK GIGIGFGESF RFHKVLQGQE IFPKSPYGRA PTNNEARGIG SLGISDGVLV SGSRNRWSAV VPGYNTHTSP SAPPVQVSSP SSVLMFQLAS NPISNYNPPY SLNDQEKEQR VNCQSFFHNS EIYGGKHASS SFLDHSFRGG DQEVMDSIGQ SNEHISPPLV GQPTVRGSQD LVSSCKGSCR LFGFSLTEER HVANIEDNAA PVASPLNPRS SFLSHVGQQF HPKPPVMSKA TGSNCTNVSN HCAVRDMLFD IAL // ID A0A067GR00_CITSI Unreviewed; 773 AA. AC A0A067GR00; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g004106mg {ECO:0000313|EMBL:KDO77721.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO77721.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO77721.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784879; KDO77721.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 773 AA; 83840 MW; E971AFECEC963E23 CRC64; MVGLIDLNTT EDDENPSSGS LSPSSSSASA LSASGFALAP APASASASAS GVSLELWHAC AGPLISLPKR GSVVVYFPQG HLEHVSDFSA AASAAYDLPP HPFCRVADVK LHAEAASDEV YAQVSLVPDE LIEQKVREGK IEDGDEDSVE VVAKSSTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG EDGELRLGIR RAPHVKSGAT FPSFCSQQSS PNSVTEVVDA IARKRAFSIS YNPRASASEF IIPVNKFLKS LDHSFAVGMR FKMRFETDDA AERRFNIFEL VALNSKHYIE SYSSLNDRYT GVIMGVGDVD PVRWPGSKWR CLLVRWDDVE SNRHTRVSPW EIEPSGSVCG SNNLITSGLK RTRIGLPSGK PEFPVPDGIG VTDFGESLRF QKVLQGQEIL GFNTLYDGGD CQNLHPSEVR RGILGSNGSG IAAIGDGSRN LQVKSDISYK GIGIGFGESF RFHKVLQGQE IFPKSPYGRA PTNNEARGIG SLGISDGVLV SGSRNRWSAV VPGYNTHTSP SAPPVQVSSP SSVLMFQLAS NPISNYNPPY SLNDQEKEQR VNCQSFFHNS EIYGGKHASS SFLDHSFRGG DQEVMDSIGQ SNEHISPPLV GQPTVRGSQD LVSSCKGSCR LFGFSLTEER HVANIEDNAA PVASPLNPRS SFLSHVGQQF HPKPPVMSKA TGSNCTNVSN HCAVRDMLFD IAL // ID A0A067GV10_CITSI Unreviewed; 433 AA. AC A0A067GV10; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO79252.1}; GN ORFNames=CISIN_1g010160mg {ECO:0000313|EMBL:KDO79252.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO79252.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO79252.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784878; KDO79252.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 376 403 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 433 AA; 48422 MW; 45F6D6A80F6396F2 CRC64; MKKNYELEQV EPDSRAGGKT KSSKKNKDVV DGKCSPVEPK SPAMIRAEEV QSNLEPQFPS FAKSMVRSHV ASCFWMGLPG YFCKSHLPDK DTSVVLEDES GIQYTAKYFA EKTGLSAGWR QFSTAHNLVE GDVLVFQLIA PLKLKVYIIR ANDFTEVDGA LGLLNLDAPS KQNDTAELEI DNGEPIVVAN QNTKKKRKKS LPLAVVQKKN KKSVQGRSAS NLGQPAEQSE NDSEEVGSEV LEGFKISTPP VQFKDVTSLD NFNILVDGLV VDSELPEDIR CNYYKLCCSQ NAFLHENLAQ GINFKLIVGT ISEIVNIADA LRACKFTTSR DEFAMWDKTL KAFELLGMSV GFLRARLRRL QRLAFESEGA EDTRRYIEAK AQQSQTQDEI RNIEARLVEL KGAWQRFDAE ISSLKSSAES YELKFREVAN APW // ID A0A067GVN8_CITSI Unreviewed; 245 AA. AC A0A067GVN8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO79381.1}; GN ORFNames=CISIN_1g023721mg {ECO:0000313|EMBL:KDO79381.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO79381.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO79381.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784878; KDO79380.1; -; Genomic_DNA. DR EMBL; KK784878; KDO79381.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 47 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 47 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 27869 MW; 3993463A317E907C CRC64; MEEVEGVIVI KDCWERFACV HSLELGDFLV FKYNGSSLFD VKIYGINGCL KEGTNTTHHK KETPIADMNA IPVKKEIGRE AEQTSIMDDP SCNQDDLEIM LISSGKRGGS SVASRVKTRL RDEKDTGEDR AFKAARLVVP KNPHFVSVFS QYSRYAVNVS VRVVRSHGIK LEPEMMLRDQ NGRKWPVKIS FRTNGRIVIT GGWSDFWREQ KLEAGDKCVF EFVLTRGNMS KEMKVQVVRK MKTCL // ID A0A067GWZ4_CITSI Unreviewed; 241 AA. AC A0A067GWZ4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO84218.1}; GN ORFNames=CISIN_1g026276mg {ECO:0000313|EMBL:KDO84218.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO84218.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO84218.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784874; KDO84218.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 27407 MW; BE74D593DDBF8B1D CRC64; MVKAKPSYEE CRLKRVEENK KRMEALNLPM LCQALRKKPS IEPSHEKQVK PRTVKKQEDV VLRRSSRVAN KPAPVYNGVI LVRVEIPRRI SSKRDLSNRV YASDEARARA VEKAVKLEAR LGPEHPTFIK PMLQSHVTGG FWLGLPGYFC RRNLPKRDEA ITLIDEDGDE YPTVYLPRKT GLSGGWKAFA VAHGLVDGDA LVFQLIRNTA FKVYIIRVNG SDQMKNLLNS KYQISEPVQS I // ID A0A067GYZ1_CITSI Unreviewed; 297 AA. AC A0A067GYZ1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=CISIN_1g0025161mg {ECO:0000313|EMBL:KDO84794.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO84794.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO84794.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784874; KDO84794.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 297 297 {ECO:0000313|EMBL:KDO84794.1}. SQ SEQUENCE 297 AA; 33246 MW; 723035067B2D6BA6 CRC64; MGSVEEKIKA GGLVIRAQTT LLEEMKLLKE MQDQSGARKA INSELWHACA GPLVFLPQVG SLVYYFPQGH SEQADKDTDE IYAQMSLQPV NSEKDVFPIP DFGLKPSKHP SEFFCKTLTA SDTSTHGGFS VPRRAAEKLF PPLDYTMQPP TQELVVRDLH DNTWTFRHIY RGQPKRHLLT TGWSLFVGSK RLRAGDSVLF IRDEKSQLMV GVRRANRQQT ALPSSVLSAD SMHIGVLAAA AHAASNRSQF TIFYNPRACP SDFVIPLAKY RKSVYGTQMS VGMRFGMMFE TEESGKR // ID A0A067H3B8_CITSI Unreviewed; 664 AA. AC A0A067H3B8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005368mg {ECO:0000313|EMBL:KDO86503.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO86503.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO86503.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784873; KDO86503.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 630 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 73580 MW; 9C0B6D92DA04F0B5 CRC64; MAYVEPNFGC SLSSQGGPGS GDLYRELWKA CAGPLVEVPR NGERVYYFPQ GHIEQLEAST NQELTHQEPL FDLPSKILCR VVHIELLAEQ ETDEVYAQIT LHPETDQTEP RSPDQCLPEP PKQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMT LATPTQELAA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGENG ELRVGVRRLA HQQSSMPSSV ISSQSMHLGV LATAAHAVKT STLFIVYYKP RTSQFIIGLN KYLEAVHHCF SVGMRFKMRF EGEDSPERRF TGTIVGVGDF SEQWPGSKWR SLKIQWDEPA TVQRPERVSP WEIEPFVASA PLNLAQPAVK SKRPRSIDIP ASASAFWYQG STQSHDITQV VGATEGQSSE SQVVRPMRQK EIDSTIINNN STDDHRIVAA QSVLSGYASS GRPGNTVIHE EVERGKKSEA SLGCWLFGID LKHNSNTAAP LGRKVVDPTT GTSGVKGSAR AASDFDASQN QDLKEVKRGM ADVSRKETQN KQGSAASTRT RTKVQMQGIA VGRAVDLTAL KGYDDLFDEL EKMFEIQGQL RPRDKWAVVF TDDEGDMMLA GDDQWPEFCK MVKKIFIYST EEVKNMATSS KPIASSVEGE GTAISLDSEL KSET // ID A0A067H3R4_CITSI Unreviewed; 687 AA. AC A0A067H3R4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005368mg {ECO:0000313|EMBL:KDO86504.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO86504.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO86504.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784873; KDO86504.1; -; Genomic_DNA. DR RefSeq; XP_006491297.1; XM_006491234.2. DR GeneID; 102627122; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 572 653 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 687 AA; 76009 MW; 9A40DFA5A18BEAA1 CRC64; MAYVEPNFGC SLSSQGGPGS GDLYRELWKA CAGPLVEVPR NGERVYYFPQ GHIEQLEAST NQELTHQEPL FDLPSKILCR VVHIELLAEQ ETDEVYAQIT LHPETDQTEP RSPDQCLPEP PKQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMT LATPTQELAA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGENG ELRVGVRRLA HQQSSMPSSV ISSQSMHLGV LATAAHAVKT STLFIVYYKP RTSQFIIGLN KYLEAVHHCF SVGMRFKMRF EGEDSPERRF TGTIVGVGDF SEQWPGSKWR SLKIQWDEPA TVQRPERVSP WEIEPFVASA PLNLAQPAVK KITTNSAASA FWYQGSTQSH DITQVVGATE GQSSESQVVR PMRQKEIDST IINNSNDCSS RLAPEGIWPS SPHLNVSLNL FPDSTDDHRI VAAQSVLSGY ASSGRPGNTV IHEEVERGKK SEASLGCWLF GIDLKHNSNT AAPLGRKVVD PTTGTSGVKG SARAASDFDA SQNQDLKEVK RGMADVSRKE TQNKQGSAAS TRTRTKVQMQ GIAVGRAVDL TALKGYDDLF DELEKMFEIQ GQLRPRDKWA VVFTDDEGDM MLAGDDQWPE FCKMVKKIFI YSTEEVKNMA TSSKPIASSV EGEGTAISLD SELKSET // ID A0A067H3S6_CITSI Unreviewed; 401 AA. AC A0A067H3S6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO86653.1}; GN ORFNames=CISIN_1g015743mg {ECO:0000313|EMBL:KDO86653.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO86653.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO86653.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784873; KDO86653.1; -; Genomic_DNA. DR RefSeq; XP_006491400.1; XM_006491337.2. DR GeneID; 102629913; -. DR KEGG; cit:102629913; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 45181 MW; 4E26031D3D895D07 CRC64; MMNFVQEEKG NSNNNNEEDQ DEDHQKERIK LPFSVSSSSS SVSSSKYKAF VPHHHQNSWL LGPIDSQEAA TNFDNREDLM DLSLGNNNNN NEDQPHKHSG NINNANVANG TGSSTTGESS GMYRSIEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKA WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDTVSFQRG VGELGKDRLY IDWRRRPDVH HVPDPTTLAQ MQFQNQLRFQ QSLRWGTRLY SLPQSLSNYG PFSYNTIHNP YYQHHQQQQI LGFGGNASST MPVQYYLRPS SVSQQIEGGH MPMVIDSVPV VVPGKTASST AAKRLRLFGV NMDCPTQDDQ SPATSSSSTR QAAASEYSSK GKSSLSFDLD L // ID A0A067H654_CITSI Unreviewed; 105 AA. AC A0A067H654; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO83162.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g043432mg {ECO:0000313|EMBL:KDO83162.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO83162.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO83162.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784875; KDO83162.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO83162.1}. FT NON_TER 105 105 {ECO:0000313|EMBL:KDO83162.1}. SQ SEQUENCE 105 AA; 12746 MW; 1D211AB5D15B94FA CRC64; EINPFLMRFL FEKQLKNSDV NAAGRIVLPK KLAETYLPPV NEKAGFWMHL EDMDFNKVWT FKFRFWPNNR GRMYIFENTR AFIKRYCLEL GDYIMVYKDE LEGSY // ID A0A067H8T0_CITSI Unreviewed; 716 AA. AC A0A067H8T0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005060mg {ECO:0000313|EMBL:KDO87410.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO87410.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO87410.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784873; KDO87410.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 617 699 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 79363 MW; 1913B360E066CF26 CRC64; MAVVGEEGKA SGSRRMAAHH RKHMDDALPT KHKPAEAGGK NELYNELWRA CAGPLVYVPR VGDIVYYFLQ GHMEQVEAYN SQDDKAELPI YNLPPKILCE VVYAQLKAEP GTDEVFAQIT LLPRPEIDEL SLEVGNSPPL PPKLNVCSFS KKLTPSDTST HGGFSVPKRH ADECLPPLDM SKDPPLQELV AKDLHGLEWR FRHIYRGQPK RHLLTSGWSV FVTSKKLVAG DVCIFLRGGD GELRVGVRRA MKLQNNASTS VISSLSMQHG ILAGAFHAIS TGTRFTVYYH PWTRPAEFLV PFSQYMKSAE IDYSIGTRFR MVFEGEECAD QRIAGTVVGT EDVDHIRWPA SEWRCLKVKW DATTDSITRP ARVSPWNIEP IERTHKRPAS VQHQQKRLRP NDASSPWFSS LFSNGVFQGQ ENRVTGVKAL GAAKTPLLPS LVRPPNPVWA QMQSGLENKL KFPMHDPFYM CLNRMVSLPG GSLMSPGLSN HWPASPFAPY EVCETAAQSK NLSVPNASSE NSGSQMCMAL ELKDENRTPL AQPNGGSRYM LFGVNLVNSP PELPSPQMAT SNELESPCSV PPTSQSSISE TIQVSEPSKS VSGILSEKQC KNCYVSRSCT KVIKFGTALG RSVDLTRFHG YDELISELDQ MFDFNGSLID GNSGFHIAYM DDEGDMMLVG DNPWQDFQCA VRRMFICPKE DIDGVIPSSP NPTPPQ // ID A0A067H9F6_CITSI Unreviewed; 467 AA. AC A0A067H9F6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO84372.1}; GN ORFNames=CISIN_1g042953mg {ECO:0000313|EMBL:KDO84372.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO84372.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO84372.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784874; KDO84372.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 353 451 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 353 451 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 467 AA; 53032 MW; 0560B5C8E492EE9E CRC64; MGEACNECRS WEEEIYWNHF QCIHFIQYLH TGFDHQLAIP EKVARNLRKK LPVTVSLKAP SGFTWVVGIT TRDHTLYFSH GWPEFVKDHF LGENDILFFK YNGGSHFDVL MFDGQSQCEK AVSYFVKKCG HTEHSNRRET RRKIRETSVE GIPNSSHCDV DITPPEKGSD DDINKIPVGQ PIVTPASSKR IRRDDTSNEF VRSRRNSYFV KKRKHKDHGS VSQTKRRIGE SCVEGIPNSS DCDVDVTLPE KASNDEINKI PVGEPIVTLD SSKRIWRVDS SNELAHTRRS SRSKTVSTNF AEMLKTKTGD EQTIINGNVA LSPPFTSNRR PVTQDEKNNA LLMAQAVSTT DSFTVVMRPT HVYKRFYMAI PASWMSKYLT LENQDVILRL NEKTWITRFQ FCKPRCSGGL SGGWKNFAVD NHLDEFDVCV FGPDNPGTKP MVLNVSIFRV VNAVVPLTQV APASLQL // ID A0A067H9R9_CITSI Unreviewed; 508 AA. AC A0A067H9R9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDO84371.1}; DE Flags: Fragment; GN ORFNames=CISIN_1g039936mg {ECO:0000313|EMBL:KDO84371.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO84371.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO84371.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784874; KDO84371.1; -; Genomic_DNA. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 60 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 166 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 388 484 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 60 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 166 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 388 484 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KDO84371.1}. SQ SEQUENCE 508 AA; 57162 MW; D66532FA9FF02B88 CRC64; TLIGPSWDTW HIDLIQQDDN LFFDKGWPVF LRDNFIECGD LLVFRYDGEL HFTVQIFDQS GCEKEAAFNS KSTSTGQKRE REEAVAHSDK ALQSLLKKIR ECSSSFESDC IDDNRDREAD SCEETRRCLS LSTIFASPSQ PKTCNIKPED EEKKVAQSFI SAFPYFVRKM KRFNVSGSYT LNIPYQFSMA HLPNCKTEVV LHNLKGASWT VNSVPTTKVH TSHTFCGGWL AFVRSNEIKL GDICIFELVH KCELHVYILR VGKQYPDSQR GTTVLTGSNV SSTTISCKQF DGVPKKVKKN SLKKIQLCNV KGSKSCEIKK HIGTDRNSVS IATCCLPKIS HEKSEAAAQN RNNVEAKMDS TPGGNLRTMM ALDEEKAARS FNSCVPHFVR IMRKFNISGS YTLKIPYKFA MAHLPDCKTE IVLRNLKGEC WTVNSLPDSK GRMVHTFCGG WMAFVRGNDI KIGDVCIFEL ISKLEMRVHI TGVGRKEVDL ESGKLTSNES SAVDHPPF // ID A0A067HEU1_CITSI Unreviewed; 699 AA. AC A0A067HEU1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CISIN_1g005368mg {ECO:0000313|EMBL:KDO86502.1}; OS Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=2711 {ECO:0000313|EMBL:KDO86502.1, ECO:0000313|Proteomes:UP000027120}; RN [1] {ECO:0000313|EMBL:KDO86502.1, ECO:0000313|Proteomes:UP000027120} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Gmitter F., Chen C., Farmerie W., Harkins T., Desany B., Mohiuddin M., RA Kodira C., Borodovsky M., Lomsadze A., Burns P., Jenkins J., RA Prochnik S., Shu S., Chapman J., Pitluck S., Schmutz J., Rokhsar D.; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK784873; KDO86502.1; -; Genomic_DNA. DR RefSeq; XP_006491295.1; XM_006491232.2. DR GeneID; 102627122; -. DR KEGG; cit:102627122; -. DR Proteomes; UP000027120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 584 665 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77318 MW; 9C19E160F06FD12B CRC64; MAYVEPNFGC SLSSQGGPGS GDLYRELWKA CAGPLVEVPR NGERVYYFPQ GHIEQLEAST NQELTHQEPL FDLPSKILCR VVHIELLAEQ ETDEVYAQIT LHPETDQTEP RSPDQCLPEP PKQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMT LATPTQELAA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGENG ELRVGVRRLA HQQSSMPSSV ISSQSMHLGV LATAAHAVKT STLFIVYYKP RTSQFIIGLN KYLEAVHHCF SVGMRFKMRF EGEDSPERRF TGTIVGVGDF SEQWPGSKWR SLKIQWDEPA TVQRPERVSP WEIEPFVASA PLNLAQPAVK SKRPRSIDIP ASEITTNSAA SAFWYQGSTQ SHDITQVVGA TEGQSSESQV VRPMRQKEID STIINNSNDC SSRLAPEGIW PSSPHLNVSL NLFPDSTDDH RIVAAQSVLS GYASSGRPGN TVIHEEVERG KKSEASLGCW LFGIDLKHNS NTAAPLGRKV VDPTTGTSGV KGSARAASDF DASQNQDLKE VKRGMADVSR KETQNKQGSA ASTRTRTKVQ MQGIAVGRAV DLTALKGYDD LFDELEKMFE IQGQLRPRDK WAVVFTDDEG DMMLAGDDQW PEFCKMVKKI FIYSTEEVKN MATSSKPIAS SVEGEGTAIS LDSELKSET // ID A0A067J8J6_JATCU Unreviewed; 169 AA. AC A0A067J8J6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP20086.1}; GN ORFNames=JCGZ_05855 {ECO:0000313|EMBL:KDP20086.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP20086.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP20086.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP20086.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK920209; KDP20086.1; -; Genomic_DNA. DR RefSeq; XP_012092965.1; XM_012237575.1. DR GeneID; 105650648; -. DR KEGG; jcu:105650648; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 59 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 74 169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 59 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 74 169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 169 AA; 19285 MW; 4F7FFA4F6A4459A0 CRC64; MDEEGRSWPA NLGQKNDGQA YIGQGWTAFR NANKLKPGDS FMFELTKKGK KPLLIMRWKT NTKTKSERWT DAPFFYAMFR ASSLESYWLK FPRDFVNKND IISKCSKMIL TNEGGRSWTV SVGRNNSGEV SLRSGWNVFA QANGLKEGDV FMLELIKKGK SPAMKFYGN // ID A0A067JDQ2_JATCU Unreviewed; 884 AA. AC A0A067JDQ2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP20893.1}; GN ORFNames=JCGZ_21364 {ECO:0000313|EMBL:KDP20893.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP20893.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP20893.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP20893.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915662; KDP20893.1; -; Genomic_DNA. DR RefSeq; XP_012091508.1; XM_012236118.1. DR GeneID; 105649469; -. DR KEGG; jcu:105649469; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 338 439 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 565 615 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 338 439 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 884 AA; 97330 MW; CADE893123A0D5B6 CRC64; MSTAAPSSSS SSASKKCFNL DCTDFKSRKG WRLRSGEFAE LCDRCASTYE EGRFCEIFHM NATGWRCCES CGKRVHCGCI VSNHAFMLLD AGGIECMACA RKNVVLTSST AWPPSIFYNS PLSERFKDVS VKNWSQLAGS GPVPWRQAPS LFNSSISHSD GHPRTLYEID RLHAGERSTL PSLEKGRIED FSERLINGNL KLGTRARDIV ENGNAGTSSE EKPGSCLGIS HQPSLREDPS APQFGMPLPF TSLNEPNGQI GGSGTPLRQP APPLLAKQFH GNLHGGVDSS PDTHIRNGRP RADARARSQL LPRYWPRFTD EELQQISGNS NSVITPLFEK MLSASDAGRI GRLVLPKKCA EAYFPPISHP EGLPLKVQDS KGKEWIFQFR FWPNNNSRMY VLEGVTPCIQ NMRLQAGDIV TFSRLEPEGK LVMGFRKAST APSSDQDNDT SKTSNGLSAN RDAEFADPSP WSKVDKSGYI AKEVLEAKSS IKKRKSSTLG SKSKRLRIEN EDMIELKLTW EEAQGLLRPP PDHIPSVVVI EGFELEEYED APILGKPTVF ATDNSGQKIQ WVQCEDCFKW RKLPADALLP SKWTCSSNSW DQGRSFCSAA QELTAEQLED LLPSCHIAAS KKMKASKQDV DNVEALEGLD TLANLAILGE NEALPASSQA TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCQTVK RRFKTLMMKR EKKQSEKEAE TTRKKQQQAL PEKLLDDDPS PSTNTESSSP DKKKMISEGS DDDPNKTKSS TSPFKGQIDL NIQPEREEEL SPGSDSGSMM KMLQDATERY LRQHRLLVSD DDNNISSGNQ VLAGHEMGEK ISNGVVLGNG HQDSDKDHPA TFSVKVSATS PATG // ID A0A067JF52_JATCU Unreviewed; 854 AA. AC A0A067JF52; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_26377 {ECO:0000313|EMBL:KDP22546.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP22546.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP22546.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP22546.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915447; KDP22546.1; -; Genomic_DNA. DR RefSeq; XP_012090599.1; XM_012235209.1. DR GeneID; 105648728; -. DR KEGG; jcu:105648728; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 728 812 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 95310 MW; BF1A78543880941D CRC64; MDSSEISIKG NSGNVRGESF SPGYSEPNAV EGQKGHCRRQ ASARDAETAL YTELWHACAG PLVTVPREGE RVFYFPQGHI EQVEASTNQV ADRQMPVYDL PSKILCSVIN VLLKAEPDTD EVYAQVTLVP EAKQDENAVE KESPKPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNVPSSVIS SHSMHLGVLA TAWHAVSTGT MFTVYYKPRT SPSEFIVPYD RYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DSTRWPESKW RCLKVRWDET SAIPRPDRVS PWSIEPALAP PALNPLPVPR PKRPRSSMVP SSPDSSVLAR EGSSKVTADP TLPIGYSRVL QGQEFATLRS SVVESNESDT AEKSVMWPSS IDDEKIDVVS ASRRHGSESW IPSGRQEPTY TDLLSGFGAN ADSSHGFGSS FVDQSSTTAS RKLVLDQEGK FNLLASPWPL MSSGLSQKLS ESNTKATLQG RDLPYQIRGN MRCSAFSEYP MLNAHRMEQS HGNWLMPPPQ TSHFDNHAHA RELVPKPALV QEHETGKPAE GNCRLFGIPL FRNPVTTEPA ASHRNMVSEP LNHTHSSSHR LHVLESDQRS DQSKGCKMAD DNEHEKQYQA GLLHTRDNQG KAQNGSTRSC TKVQKQGIAL GRSVDLTKFG NYDELIAELD RLFEFDGELL APKRNWLIVY TDDEGDMMLV GDDPWQEFVG MARKIFIYTR EEVQKMNPGT LNSKGDENLL EVDGVDAKEV KRLPLPSAHS TENC // ID A0A067JFI4_JATCU Unreviewed; 287 AA. AC A0A067JFI4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP22661.1}; GN ORFNames=JCGZ_02503 {ECO:0000313|EMBL:KDP22661.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP22661.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP22661.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP22661.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915410; KDP22661.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 193 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 193 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 33249 MW; 348FA02F8908E2D9 CRC64; MARQPSDGQR RRPGRPPKEW REGPCQESKA PAVESPPGHH FFRVILQKII EDKKLRIPLR LVNRSVGSAQ LSDMARLCVL MEMNGNFEYK GNSRFNVIIF DPSNSEITEY GKNEEETRHE NQETECDDFG EETKLYQTKG TEIPSTCKND NNKRKVEVFC CLQYRRLSEM KSLSKGSKKA ILAADLFEPT YPAFKVLLRP YNFTPGASYV PSSFVERYMK RVHEEVRLES PDGKRWSVRV TDNGYGLNFS YGWKSFSNYI NLKDGDVVIF QMINSKDFLL KIKVFRS // ID A0A067JLU7_JATCU Unreviewed; 396 AA. AC A0A067JLU7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP20985.1}; GN ORFNames=JCGZ_21456 {ECO:0000313|EMBL:KDP20985.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP20985.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP20985.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP20985.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915662; KDP20985.1; -; Genomic_DNA. DR RefSeq; XP_012092409.1; XM_012237019.1. DR GeneID; 105650140; -. DR KEGG; jcu:105650140; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 180 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 180 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 396 AA; 45037 MW; 1AFD04881E1E11EA CRC64; MENLFSPLST NITSNTTTIT TNATKPNMSF SQNSPLSSIC GPLNYPSTSS TSSPPDHSIP PPFQTQVHTS QFSPFYPFWF LQNGIEIQRS YLLQPNGFSI DQERRVLDAY KTKVARSKRK LARQRSLIKN SSSGVNSAQM DIKKPAFNGA STNVQDSQGN INKDLYTFCT LDNKKLRVLL TKELKNSDVG SLGRIVLPKR DTEENLPILS EKEGIQVVLI DVNTNQEWSL KFKYWSNNKS RMYVLENTGD FVKQNGMESG DSLTLYEDES KNLYFSIKKV ETQEAEPFTN QSYLYIPNAC HARDEEEASF ALLMEQLKHK EQQEEEANSL VTLSMDIGSS YRHKEEEKNG RFFNNVTSIG RTSSSAQSMD DHFILDDCYN GLDILPDVNR YNFQYD // ID A0A067JLY7_JATCU Unreviewed; 734 AA. AC A0A067JLY7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_21491 {ECO:0000313|EMBL:KDP21020.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP21020.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP21020.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP21020.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915662; KDP21020.1; -; Genomic_DNA. DR RefSeq; XP_012091679.1; XM_012236289.1. DR GeneID; 105649598; -. DR KEGG; jcu:105649598; -. DR KO; K14486; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 734 AA; 80799 MW; 4831771392CE22A7 CRC64; MVGMIDLNTT EEDETTPSSG SFSSPSTSSA SALSASNLSP STASGSSSVC LELWHACAGP LISLPKKGSL VVYFPQGHLE QLPDFPLAAY DLPSHIFCRV VDVKLHAEAT NDEVYAQVSL VPESEQIGQK LKEGKIDGGG EEDDMEAAVK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYTQ QRPSQELVAK DLHGFEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGEDGE LRLGIRRAAQ VKCGATFPIP ALCSRQLSHS TLTDVVNAIS MRSVFNISYN PRASSSEFII PFHKFLKSLD HSFSIGMRFK MRFETEDAAE RRYMGIVTGI SDQDPARWSG SKWKCLVVRW DDMETSKQSR VSPWEIEPSG PVSSSTNFFA PGLKRSRSGL PSSKPEFPVP DGIGVSDFGE SSRFQKVLQG QEILSFNTLY DGVDPNRHPS EARRCFPVSH SSRLPASRNG AKDLVVNSDV SYKGIGFSES FRFNEVLQGQ EIIPSLPFGR GLKTNEACEN GFFGVSDGVQ MSNSRNGWST VMQGYSTHIR PPAQVSSPSS VLMFQQASNL VSNPSPMYDF HGQEKQGVST HSWFHNPETC GEKHIFSSHS DRISRRDDQR GMGSFSLSHD HNQHGILQPL VAQSPFRGSQ DLVSSCKSSC RLFGFQLTED RHVTNKDNNP LPMTSLNPGS SFLPRVGEPF RPKPPAITNA VGNNCTKGIL QQQT // ID A0A067JMG9_JATCU Unreviewed; 394 AA. AC A0A067JMG9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP25176.1}; GN ORFNames=JCGZ_20332 {ECO:0000313|EMBL:KDP25176.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP25176.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP25176.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP25176.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914993; KDP25176.1; -; Genomic_DNA. DR RefSeq; XP_012086558.1; XM_012231168.1. DR GeneID; 105645550; -. DR KEGG; jcu:105645550; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 394 AA; 44297 MW; A5ABED55E01BD518 CRC64; MDFGSPFTED DQMSKANKLP FSYSSSSSPS SSSSHHHKLT QIYDNPQHHH QMASWLGTKY ETAQEDTSTG ANKLDLMDVN DDEDQSVAVV EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK YFPLDSSTNE KGLLLNFEDR TRKAWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRGMGDSGK DRLYIDWRRR PDAPDPTSHN QHRHLSSIPW SPLLMRPPAV PMVPRDHLHL SNPNRNMYNY NIGYGYAYSS SNSSSTGTIV YMRSAAPQQV GTGMVQRQQG GGGGFVEPMV YESVPVVQGK AALKRLRLFG VNMDCLIMDS QECDKIMSSP LPIAIPSSSS TMAQLSSASH NPLQLRHYNG TQLPPPPTQF LHKGKSSMSL DLEI // ID A0A067JPC9_JATCU Unreviewed; 884 AA. AC A0A067JPC9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP21870.1}; GN ORFNames=JCGZ_00657 {ECO:0000313|EMBL:KDP21870.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP21870.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP21870.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP21870.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915560; KDP21870.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 289 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 558 608 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 289 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 884 AA; 97666 MW; 9F0104C46D8ACE64 CRC64; MESKTCMNAL CVASTSSVWK KGWPLRSGEF ANLCDKCGSA YEQSIFCDVF HSKDSGWREC TSCGKVMGNE KSSGFGMSKI DDTGESQSAD NQLDGDRKLL QLGNTIEVIG SRHLLQLQND EASGLFRQMK QEDNLTPMGE IGSTSLSNFN QASNGLSQTT KPEIRKTNIA TKELYESLAQ TNLSITLGSP LVNSNPYPGV VIDERAQSKA SSPLQHGSRS RHLLPKPPKS VLTTGLEANT GMVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISAD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPIRIQD VKGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG KLVMGFRKAS NSMAMQDIQP SAIPNGVHTS ESFFSGVFEN LPIISGYSGL LQSLKGSSDT HLNALSKNLH SANGDISWHK SEKHEERTRE SLLLPSLLVP ERKRTRNIGS KSKRLLIDSL DALELKLTWE EAQDLLCPPP SVKPSIVTIE DHDFEEYEEP PVFGKRSIFV VRSIGFVIRG QEQWAQCDSC SKWRRLPADI LLPPKWTCAD NAWDQSRHSC SAPDELTPRE LENLLRLNKD FKKRRIASVH RPAQEHESSG LDALANAAIL GDEGDPSTIA VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIVQRNQHM AGPRDDAEVE SSSKHVSTPQ DPSENEVRSV TELESKSQSN NLSNKMVESG KGHIDLNCHP DREDESQAGL SRMSMMSLLQ VASLPLETYL KQNGLTSLVT EQQGSSASHM PPQTGESEGL LPEDCQLVSA VLEQESGGEE NNGPGQEQSQ NDPV // ID A0A067JPZ4_JATCU Unreviewed; 357 AA. AC A0A067JPZ4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP24888.1}; GN ORFNames=JCGZ_24432 {ECO:0000313|EMBL:KDP24888.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP24888.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP24888.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP24888.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915032; KDP24888.1; -; Genomic_DNA. DR RefSeq; XP_012087592.1; XM_012232202.1. DR GeneID; 105646354; -. DR KEGG; jcu:105646354; -. DR KO; K09287; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 107 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 178 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 107 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 178 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 40968 MW; 9EA143016B3E95D7 CRC64; MEDDASSSLL SNGKTNIVTF QISDSFDSNY PPFCASKRPR LEHNNNNNNA PKFKGVVQQQ NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSCRNFPWNE RNIQEPNFQI QFSAQVILNM IRDGSYQPNF ADFLKTQSRR QGLAGTSSLE NNSIQTYGDG QFSCIQLFQK ELTPSDVGKL NRLVIPKKFA IKYFPYISGN VEEDAGIEDL ELVFFDRLMK CWKFRYCYWK SSQSYVFTRG WNRFVKEKNL KEKDIVTFYA CIGPNTVQEG QHFSLIDISY SNGQSCVADD GVSHIEEMQK DLELNLGQTI RNKFHKHEEK GENGFRELEL KISSKSKGLR LFGVQIN // ID A0A067JSN2_JATCU Unreviewed; 357 AA. AC A0A067JSN2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_26375 {ECO:0000313|EMBL:KDP22544.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP22544.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP22544.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP22544.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK915447; KDP22544.1; -; Genomic_DNA. DR RefSeq; XP_012090598.1; XM_012235208.1. DR GeneID; 105648727; -. DR KEGG; jcu:105648727; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 40565 MW; 526D7EAC124EC3F8 CRC64; MEGQKGHSRR QASARDAETA LYTELWHACA GPLVTVPREG ERVFYFPQGH IEQVEASTNQ VADQQMPVYC LPSKILCRVI NVLLKAEPDT DEVYAQVTLV PEAKQDENAV EKQPSQPPPP RFHVHSFCKT LTASDTSTHG GFSVLRRHAV ECLPPLDMSR QPPTQELVAK DLHGNEWRFQ HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QQGNVPSSVI SSHSMHLDVL ATASRAVSRG TMFTVYYKPR TSPSEFIVPF DRYMESVKNN YSIGMRFKMR FEGEEAPEQR FTGTIVGIED ADSQRWPESK WRCLEVRWDE TSAIPLPDRV SPWSIEC // ID A0A067JV56_JATCU Unreviewed; 1115 AA. AC A0A067JV56; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_19776 {ECO:0000313|EMBL:KDP27747.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP27747.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP27747.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP27747.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914798; KDP27747.1; -; Genomic_DNA. DR RefSeq; XP_012084285.1; XM_012228895.1. DR GeneID; 105643704; -. DR KEGG; jcu:105643704; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1003 1087 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1115 AA; 123071 MW; 495438AB3116988E CRC64; MKSPANGAGA ASAAALNPAE GGGGEKKSIN PELWQACAGP LVSLPAAGTL VVYFPQGHSE QVAVSMKKDI DAQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKDALL RSDLALKSNK PQTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVARD LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ TTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVCSNQ ISLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGERRNRV SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PEGDSADLDN LFKKTMPWLG DDMYMKDPHS LPGLSLVQWM NMQQNPSLAN SLQPNYMQSL SGSVLQNLPG ADLSRQLGLS AQQLPQPNNL QFNAQRLPQQ AQQLDQLPKL QSSLNPLGSI IQSQHQLGDI TQQPRQNLVT QTIPSSQVQP QNLQPQTLAQ NTNILQQQPS LQSHQLPRNI SQNLQQQQQN QQQHIMGQNQ QQSLLQTQLP DQVTQHLQMP DNQIQLQLLQ KLQQQQQSLL SQQSVLQQPS QFSQLQDPQR QFLEASKSFA RSMPANQLLE MPQTTPASLP QSNIIQQQMT KNGNQTNARL SHMPQQLKFQ QQQPGTLSEM PGHMGLTTSS VVNHSVANHL SIAGNIILTS AAGAGLSGIT EEVPSCSTSP STNNCANLVQ PMNSRVHQNT VLGDDAAQSA ATLLSPNALE TMSCSANLVK DLQQKSDVKP SLNIAKNQSQ GFFPPQTYLN GATAQADYLD TSSSTTSVCV SQNDVHLQQN NSSSYNPQSM LLRDTSQDGE LQADIRNSVP YGTNVESQLG VPMNSDNVLS EGVIGLGKDL PNNLSSGCML ANCENSKDAP SSMVSQSFGV PDMAFNSIDS TINDSSFLNR GPWAPPPQFQ RMRTYTKVYK RGAVGRSIDI TRYSDYDELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDFGNS VFPNQACSSS DNGNV // ID A0A067JYZ2_JATCU Unreviewed; 703 AA. AC A0A067JYZ2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_16506 {ECO:0000313|EMBL:KDP29117.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP29117.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP29117.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP29117.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914761; KDP29117.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 617 700 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 77159 MW; BC34467BAB43E992 CRC64; MEAKDRVKEV DKCLDSQLWH ACAGGMVQMP AMNSKVFYFP QGHAEHASGS IDFRTLPRVP PYILCKILAI KFMADPETDE VYAKIKLVPV SGNEAMEDEQ EGVINGGGEG QESNKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGETWK FRHIYRGTPR RHLLTTGWST FVNHKKLVAG DSIVFLRADN GDLCVGIRRA KRGIGGSPES SWNPAGGNCV MPYGGFTGFL REEDNKIMRN GTSGNGNGSS ANGSSISRGK VKSEAVIEAA SLAANGKPFE VVYYPRASTP EFCVKASLVK AALQIRWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP IRWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKLRLPQHPD FPLDGQFPIP TFSGNLLGPS SPFGCLPDNT TPAGMQGARH AHYGLSLSDL HLNKLHTGLI PAGFPPLLDH TATHTRTSNG PIIQKPSMSE SVSCVLTMSH ASTQPSKKRN DAKTPHLVLF GQPILTEQQI SLSCSGDAVS PVLTGNSSSE GNLNKTTNFS DGSGSAFHQQ GLLERSSCEG FQWYKDNRQE NEMSLETGIC KVFMESEDVG RTLDLSLLRS YEELYRKLAD MFGIENSETL NNVLYRDITG SVKHIGDEPF SDFMKTARRL TILMDSSSDN VGL // ID A0A067JZ32_JATCU Unreviewed; 713 AA. AC A0A067JZ32; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_13849 {ECO:0000313|EMBL:KDP28078.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP28078.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP28078.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP28078.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914782; KDP28078.1; -; Genomic_DNA. DR RefSeq; XP_012082658.1; XM_012227268.1. DR GeneID; 105642444; -. DR KEGG; jcu:105642444; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 621 702 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 141 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 713 AA; 79407 MW; 78626D2365E2F349 CRC64; MTRGNVVREV DGSSNEVRVH GLPPTYPHGD TDDLYTKLWH SCAGPLVYVP RSGEKVVYFP QGHMEQVEAH MNQSDVTEMP IYNIPSKILC KVLSVQLKAE AGTDEVFAEI TLLPEAKQDE LSSNEDEYFS RLPPKTYPQS FSKKLTSSDT STHGGFSVLK RHAEDCLPPM DMSLDTPEQK LHAKDLHGLE WCFRHVFRGQ PKRHLLTTGW STFVTSKKLV AGDAFIFLRG QNGQLRIGVR RAMKLQNNAS TTVISAHSMH HGILATALHA INTGTRFTVF YHPWTSPTEF IIPFDQYMKS AEIDYSVGTR FRMLFEGDEC ADQRIERFEG TIVGNEDVDH IRWPNSEWRS LKVKWDATSD GFVRPERVSP WSIESIEPIK RKQNYFLCPP KKARPMDASV SGFPSMVNDG LLHGPIECAT QNHMEVLQGQ EKGDTDVNKF DVLIPPIIPC LISQNPDSNS TTLGLGNQLC LSTHGTFYRC PSGTLLFPGG NITRLGFPSS SCPPLSSFGI PEKAAGSRNL SVLNLNSYRS GSQDCKTLEP KDANEILHAP PDGGGRYMLF GVNLVKNPPE LPSPQVATFS DHESLYSVPH MSESSVSEAS KSTSGINSEN HSNNCRSVTD LHCIKVLKYG AAGRSVDITQ FDGYDTLIYE LDQMFDFEGS LIDGSSGWQV TYTDAEGDIM LLGYCPWQKF QCKVQKMFIC PKEDIGQVNQ ESV // ID A0A067JZG6_JATCU Unreviewed; 360 AA. AC A0A067JZG6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP29366.1}; GN ORFNames=JCGZ_18287 {ECO:0000313|EMBL:KDP29366.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP29366.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP29366.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP29366.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914751; KDP29366.1; -; Genomic_DNA. DR RefSeq; XP_012082031.1; XM_012226641.1. DR GeneID; 105641983; -. DR KEGG; jcu:105641983; -. DR KO; K09287; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 189 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 189 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40084 MW; 810D59BAAAC1DE31 CRC64; MDGSCIDEST TTDSISLTPP TKSSPESPLC RVGSGTSVIL DSESGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AAKAYDIAAQ RFRGRDAIAN FKLEANETED DDIETAFLNS HSKAEIVDML RKHTYNDELE QSKRNYRIDG QGKHKNHGGV NNVGLIASER VLKAREQLFE KAVTPSDVGK LNRLVIPKQH AEKHFPLQSG SNSTKGVLLN FEDITGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DIVSFQRSTG PDKQLYIDWK VRTSGSNQVV CPMVQPVQMV RLFGVNIFKV AGNGNGGVEG VVGGCSGKRM REMDLLSLEY SKKQMVIGAL // ID A0A067K027_JATCU Unreviewed; 439 AA. AC A0A067K027; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP28398.1}; GN ORFNames=JCGZ_14169 {ECO:0000313|EMBL:KDP28398.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP28398.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP28398.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP28398.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914782; KDP28398.1; -; Genomic_DNA. DR RefSeq; XP_012083081.1; XM_012227691.1. DR RefSeq; XP_012083082.1; XM_012227692.1. DR GeneID; 105642758; -. DR KEGG; jcu:105642758; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 439 AA; 50105 MW; D6FC6DB333EBE317 CRC64; MNFVEQERGY CDKGEQGPEE EEEEEEEEEE EVTMTSKLPF PSPSSSSSSS TKYRNFLPEN QNLWLGSSNS QQDYKNQEPS LNFENKLELM DLSLGNDNGT VNTSSGGGGS TGHESIEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGEWKHRLYI DWRRRPNAPD PTSFTHLELQ NQLHFPQSVR WGRLYSLPQP LSSMPRPYEQ HHHQFQNLGY SIHQQPYHHQ YHHNYHHHHH HHHQQPQYYL RPQGGALQIG ALLHNQQEGG DHQPQMVIDS VPVVHGRSVG KRLRLFGVNM ECSTQDDQSS PSSSSVTIPT MMGSFSPHFT AANSSSSVPP LQSRVVVASP SSASTPINTQ AHDQFPKKGK TSLSFDLDL // ID A0A067K091_JATCU Unreviewed; 705 AA. AC A0A067K091; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_14244 {ECO:0000313|EMBL:KDP28473.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP28473.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP28473.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP28473.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914782; KDP28473.1; -; Genomic_DNA. DR RefSeq; XP_012083194.1; XM_012227804.1. DR GeneID; 105642833; -. DR KEGG; jcu:105642833; -. DR KO; K14486; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 590 671 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 705 AA; 78357 MW; 1F58881ACAEE23AE CRC64; MAHVESNPRG GSISHGERGG DDLYTELWKA CAGPLVEVPR PGERVFYFPQ GHMEQLEAST NQELTQQIPR FNLPSKILCR VVHIQLLAEQ ETDEVYAQIT LHPEPDQTEP TSPDSCLPEP QRQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMN QSTPTQELAA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGDNG ELRVGVRRLA RQQSPMPSSV ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTSQFIIGLN KYLAAVNHGF SVGMRFKMRF EGEESPERRF TGTIVGVGDI SPQWSGSKWR SLRIQWDEPA TIQRPERVSS WEIEPFAASA SINIPQTVVK SKRPRPVDTP TSEITTNSAA SPFWYHGSTQ SHEFNQLGSV AETQSCESQV FWSMRQKEID SNLLNSNSCG NSRVQPESIW PSSPHMNVSL SLFPDSTEDN RTITTQPVIS GYASPIPSRQ INNLIHDQVE KGKKYENSVG CRLFGIDITS NSNAAATPEK EALCPTVDSH GTEGPAPASS DSDKAQNMDV SNPLKDQKQG ASEVVPRETH SKLGSTSSTR TRTKVQMQGV AVGRAVDLTV LKGYGDLIKE LEEMFEIKGE LSTRDKWAVV FTDDEGDMML VGDDPWPEFC KMVRKILIYS SEEVKKMSTS SKFLASSLED EVTVASLESE HKSDK // ID A0A067K0G3_JATCU Unreviewed; 695 AA. AC A0A067K0G3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_20425 {ECO:0000313|EMBL:KDP25269.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP25269.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP25269.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP25269.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914993; KDP25269.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 664 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 77650 MW; 64BC5664E2757C4F CRC64; MAANRGGSFS QANNEGGGGD DLYTDLWKAC AGPLVDVPRN GERVFYFPQG HMEQLEASTN QELNQRVPLF NLPSKILCRV IHIQLLAEQE TDEVYAQITL LPEPDQPEPT SPDPCPTEPS RRPTVHSFCK VLTASDTSTH GGFSVLRKHA TECLPQLDMT LPTPTQELVA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGENG ELRVGVRRVA RQQSSMPSSV ISSQSMHLGV LATASHAVST QTLFVVYYKP RTSQFIISLN KYLDAVNNKF AVGMRFKMRF EGEDSPERRF SGTIVGVEDF SPHWVDSKWR HLKVQWDEPA SIPRPDRVSP WEIEPFAASV PPSMTQPVAV KNKRPRPLVE VHTLDLSSTA SPPWNSRLTQ SHDLTQLSVT AECKRNENHM IWHHKQSDIN SHSNSISRSP TEGGWLSSPR VNVSQHLFQE ATEDSKSVSN WPVVSGYSTP QSAKFKNDPI LEPIEKGRKS EGTTSYRLFG IELINHSTSS LPIEKTPAHP ASVSSGTIEG HVMSTLSASD SDQKSDVSKE KKSEELQVSP KDVQSRQSSA STRSRTKVQM QGVAVGRAID LSMIKGYDQL LDELEDMFDI KGQLHPRDKW EIVYTDDEGD MMLVGDDPWP EFCNMVRRIF ICSSQDVKKM TPGSKLPVFS LEGEGTVLSS ETADN // ID A0A067K133_JATCU Unreviewed; 367 AA. AC A0A067K133; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP29837.1}; GN ORFNames=JCGZ_18412 {ECO:0000313|EMBL:KDP29837.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP29837.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP29837.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP29837.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914726; KDP29837.1; -; Genomic_DNA. DR RefSeq; XP_012081544.1; XM_012226154.1. DR GeneID; 105641570; -. DR KEGG; jcu:105641570; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 237 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 237 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 367 AA; 42683 MW; F7DC9FFF4B370FC6 CRC64; MASSSYPKKD DLFEANKPHF LKIVLADTIR DKKLVFPRKF VRKYGNNLPS SIVLTVPSCA KWQVELIKSD GEIWLQNGWQ EFVEYYALTV GSLLVFEYDE RNCRFNVIIF DKSALEINYP YTVNVENEGK GTNNPEEAKY DVSYESLDEV LPSRKIMEES PSPLPNPHKN MKLENLTLPE TCKKMKLENP TRKNEAKRGS CGEKQKFIWR TQPLTKNYKA NALHRARTAF KSKNPFFMVV MQPSYVHAGN KMWIPERFAR RYLKIKRGDV ILIVMGGRTW SIIYHCNNKT KLNPRLCGGW TKFSHDNHLE VGDVCVFELV NPAITKLKVV IFRYSKDASG SHHSVRREKL KHEEEESRCK QTKKAFH // ID A0A067K3N4_JATCU Unreviewed; 577 AA. AC A0A067K3N4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP26424.1}; GN ORFNames=JCGZ_17582 {ECO:0000313|EMBL:KDP26424.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP26424.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP26424.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP26424.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914893; KDP26424.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 435 537 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 435 537 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 577 AA; 64674 MW; EA0E9F9BBD665780 CRC64; MEILQPPDQD VGVGCMSMMD NFGYMDLIEN NDFLDPSSIF QADENFLEEF NTEQNLQQEL QVQQRNEELA METKSEVTQK QESGEGASDD LAMVFLEWLK SNKETVSAED LRKVKIKKAT IECAAKRLGG GKAAMKQLLK LILEWVQTNH LQKRRMKESS QDPLQNPNPN LNCSNSIQPD QSNPCFSQSP WIAPPPYISD PAATGMQGFQ PMVGYMADPF VNGASNMAGQ SYPPPQPPQP PSSSDYQMLD SAQSWSASQF ALASHYSPFP DNNLQPVPTH PNVFSGYGNQ YPCQYLPTQV GDTLVRLGSS ATKEARKKRM ARQRRFMSHH RNHNHQNNNQ QNQNQNQNTV IDHHGRLGSD NITPAAQPPN PGNWVYWPAA VGGVAVSTTP VLPMDAPPVH TVDRPAMQSH QNHQRQVASD RRQGWKPEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH LPELEARDGI SIAMEDIGTS RVWNMRYRFW PNNKSRMYLL ENTGDFVRTN GLQEGDFIVI YSDVKCGKYL IRGVKVRQPG AKPENKKARK SPKNSHASTP ATVNGSSSNT NQTQTVK // ID A0A067K3S9_JATCU Unreviewed; 80 AA. AC A0A067K3S9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP30881.1}; GN ORFNames=JCGZ_16144 {ECO:0000313|EMBL:KDP30881.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP30881.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP30881.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP30881.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914639; KDP30881.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 80 AA; 9590 MW; BE451F0786033055 CRC64; MPTVLTMKFT INFLGYEQRL NIPMHFARSL LGEESKDVWM FAPGSIRGWS VRYITYTRKG SMWRARFENG WHQFVKENEL // ID A0A067K6W5_JATCU Unreviewed; 341 AA. AC A0A067K6W5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP31847.1}; GN ORFNames=JCGZ_12308 {ECO:0000313|EMBL:KDP31847.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP31847.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP31847.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP31847.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914593; KDP31847.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 39680 MW; 3B58C7A2E7F9D223 CRC64; MDNNSSFMTF SRVLKNMVKA SRKLPSSIEF FKVFLSSSSS CKLSLPPAFV MRVNQTISQN ATLKDYTGKI WDVHLQKTET GLIIGKGWQE FVHHHSLVDA DFLLFKYNGN SEFYVKVFGR NGLKKRKPKD NKVFSTHVKE ETETEIEEEK NRTQSTSDCK RKFSEMAAER TRRSVRRSGG SVSKWRRATC SSGGNQFKSR HSTVTKYPDQ ECKMDKAPAF VKPKNPYFVV LMTRTALYQV YVHRLVLKVH KIKLQENTNL RDERGKLWPV KVNYKKDGRI TINDGWLDFH RKHNVAMGDK IIFELMPTEN NLCNLIQVVI DKKQVTPRPR RHQSWSDVDH Q // ID A0A067K729_JATCU Unreviewed; 497 AA. AC A0A067K729; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP31917.1}; GN ORFNames=JCGZ_12378 {ECO:0000313|EMBL:KDP31917.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP31917.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP31917.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP31917.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914593; KDP31917.1; -; Genomic_DNA. DR RefSeq; XP_012079217.1; XM_012223827.1. DR GeneID; 105639693; -. DR KEGG; jcu:105639693; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 440 481 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 497 AA; 55695 MW; 0B6B7A5C41D9DE04 CRC64; MAEIVKKEAE EGNFNRTAPY GEENDKSVAE EDVTLAQLSL TPSSPRPRPL ASCSSGLEKT EKRVKVKRRY SDSKIKHAIT SHAGKCICCG QNKDAVTRMC TAGETKSPAM IRAEEVQSNL ESTFPSFLKS LVRSHVGSCF WMGLPGPFCR AHLPREDATI TLEDECGKGF RMKYIAYKTG LSAGWRQFSV AHQLLEGDAL VFQLIEPCKF KVYIIRANDL TEVDGALGLL TLDPQIKQKD AETDDAEMPF IHCKVSKRKR HRSLPLAVVQ KKHKKSGRSR LSVPRTGQIA EQSENDSEEV ASEVLEGFKL SLPAIQFDDV KSFENFNIVV DGLVLDSELS EDIRRKYYKL CCSQNAFLHA NLIKGINFKL IAGIISETVN ISDAIRACNL TTSHDEFDTW DKTLKASEHF GMSVGFLLAK LRRLVCLAFD SEGATKTRRY LEAKTEKVHT EDEIRNLEAR LVELKAAYEK CGADIESLKS KAESYEVKFQ EEVHAPW // ID A0A067KA42_JATCU Unreviewed; 333 AA. AC A0A067KA42; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP31848.1}; GN ORFNames=JCGZ_12309 {ECO:0000313|EMBL:KDP31848.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP31848.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP31848.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP31848.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914593; KDP31848.1; -; Genomic_DNA. DR RefSeq; XP_012079137.1; XM_012223747.1. DR GeneID; 105639633; -. DR KEGG; jcu:105639633; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 238 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 238 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 38006 MW; BA6762932E6A880B CRC64; MENSPHFLKI LLGDVIRHGR LEIPEKFLRK YGNGLSSPVT LKVPSGATWQ VELLNCDDEV WLEKGWQEFA EYHSLQCGHL LVFKYEQPCH FYVIIFDKSA TEIEYPCARI CTADRNLDEE LKEPKVEENE DNSSVEILNY PSSNLKRGGE TLRPCPLSPK KMRTVAANKT TDTAVSNHDS PSSGSTIGNP YSSMRDFGGN FNKGLSKENS FLKAIRGSCP RTSKAHEAAN KYISKYPSFK SVVNVECLRR CTVVIPNSFS REHFWHKVED LTLRVADRCW HMRLLNYYDK RLTKFGAGWT AFERGNSLKK GDVCVFELIE SRVLNVCIFR CSD // ID A0A067KBF7_JATCU Unreviewed; 640 AA. AC A0A067KBF7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP33467.1}; GN ORFNames=JCGZ_07038 {ECO:0000313|EMBL:KDP33467.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP33467.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP33467.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP33467.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914539; KDP33467.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 279 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 395 491 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 515 609 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 279 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 395 491 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 515 609 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 640 AA; 73527 MW; 3B32EF77A8DF0E85 CRC64; MATSRVLPCK PHFFQPLLPG FEYQFSIPVA FFKFLKGQAC DKAVLRSRAG QKLWHVNING GRFEDGWKEF VQNHDLHVGD ILVFELEGNM VFDVLVFDPS FCEKEYPSFA TSQIHVKEEK VEIEEEEEHI AKRSTPEESK QKKKTRTSFE AAPAVVKHPY FEVKLTSYSS KESRLCLPMG FARLHGLNGR NCKMILLDQE NRSWLVDLGF KKSDDRVFIG RGWYACCVAN YLKAGDSLIF ELIENGKRPT LKFSNKLKKE KQPITDLQAK ASSVLEHPYL KIQVTSNSAI RSRVCIPKKF AALSNLRNRC GIILMDQEGR CWPAKLWNKA GEAYIHGWRE FHVANDLKPG DCLIFKLTER GKRPVFKLCR KLIKKRQPVT TVEVEANSSV LKCPYFVAKV TPSSVTQSKM YIPRNFTRLN NLNDTCCEMI LKNQEGMSWL VKLWNKQSDN EAYILDWNNF RVANGLKPGD SFIFELIENG KRPVLKMCRL NFEHKANQEQ CHQDAEAGSS LMRHPYFYVT MKASYFKYQL RIPRNFARRH SLSKCSKMIL ENEKGRSWSV SLGKDSGGSY IGCGWAEFVK ANCLREGTVF MLELVKRGDE PMMKFYGMDG GTAACNKSHY KDSGVQRGSF ENWDDVKPNI // ID A0A067KCM5_JATCU Unreviewed; 591 AA. AC A0A067KCM5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_12025 {ECO:0000313|EMBL:KDP32733.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP32733.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP32733.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP32733.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914570; KDP32733.1; -; Genomic_DNA. DR RefSeq; XP_012078139.1; XM_012222749.1. DR GeneID; 105638867; -. DR KEGG; jcu:105638867; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 591 AA; 65106 MW; 18FCA486061A94DB CRC64; MPLLQSSADL RLVDPRIWRA CAGSSVQIPI VNSRVYYFPQ GHLEQSSSSA SPSFLSALAR SKPLIACQVS GVQFLADPVT DEVYTKLFLF PIDPSFNHSL PLVEPAGHQG GDDNEDKIVA FAKILTPSDA NNGGGFSVPR FCADSIFPPL NYQAEPPVQT LTVTDIHGIT WDFRHIYRGT PRRHLLTTGW SKFVNHKKLI AGDSVVFMRN LAGEMFIGVR RAVRFNNGGD CARWREQIGR GTGDVKMKVK EEGFSRSGRG RVSPEAVMEA VERAAQGLPF EVVYYPRAGW YSDFVVRAEV VEGALNVFWT AGMRVKMAME TEDSSRMTWF QGTIASAAAA DCGPWRGSPW RMLQITWDEP EVLQNAKKVS PWQVEFIAPT PPLHAAFPPA KKFRYPENSG LLIDGEGELF FPMSGLTNST MENMNHSLLN YNTFPAGMQG ARQDPFSAFG LSNFLSENAS QMSTDNAFGN KMVPKLQTVS TELNIGSSHS DNLSPDSQSS MHSFGTELVG NQCSNSSKVG ISSFQLFGKI IRMNQPVESG FDDVSYIDDY GNKGYNENNS LDLGLTSSYT ELLNRIDVQC QRASAVEACS L // ID A0A067KEN3_JATCU Unreviewed; 282 AA. AC A0A067KEN3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP33468.1}; GN ORFNames=JCGZ_07039 {ECO:0000313|EMBL:KDP33468.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP33468.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP33468.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP33468.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914539; KDP33468.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 149 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 149 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 282 AA; 32322 MW; D19157D25FC7C056 CRC64; MLPSKPHFFQ PLLPGFKQGL SIPVSFFKHL KGQECDKAVF RSSGGKVWHV KINGRRFEGG WEEFAQEHDL HVGDLLVFRH EGNMVFDFMV FDPSECEREY PLFHVKQEIQ TSEEEEDQLP NKSSPGEVTK KKKKKVELSS KGKTAASSYF VVNVTSYSIR SSRLNLSREF ARTNGLCNRR CKIVLKNLEG RPWVADLGFK KSSNLVYISQ GLRSFYTANN LEPGDSFIFE LIENWKKPVL KMRELTRKKQ VKTESGDKAI SSCFVVNMTA YSARRPRIVS AQ // ID A0A067KHW4_JATCU Unreviewed; 294 AA. AC A0A067KHW4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP31850.1}; GN ORFNames=JCGZ_12311 {ECO:0000313|EMBL:KDP31850.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP31850.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP31850.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP31850.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914593; KDP31850.1; -; Genomic_DNA. DR RefSeq; XP_012079138.1; XM_012223748.1. DR GeneID; 105639634; -. DR KEGG; jcu:105639634; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 33259 MW; 4BA2EDA8D273C475 CRC64; MARKPKQVPT FFKVLLSDFM EKLKIPPAFV KKFKKIMPKA PTLKPNEGKS CEVTIVNEGD SYFFKRGWNT FVKNQGLETS DFLVFNLVDE ITFQVVIYGR TGCEKDVKVA SDNERVNDSS QSSASSAEEE IKIKKQGFKR RGSPLPCRFK TPQASARTAD KDKVTETIRS LKRKNPYFVA VLKKYQKYNL VMPKDFANKT KLVSKEEIVM KDPKGRSWPV KVNILVVQRG CQVRFGLGWS QFYGANELAT GDTCVFHFIA EKGNLIEVEI HKEGVRGVRT GPAKSLSSVK SELI // ID A0A067KIX8_JATCU Unreviewed; 355 AA. AC A0A067KIX8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP36181.1}; GN ORFNames=JCGZ_08825 {ECO:0000313|EMBL:KDP36181.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP36181.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP36181.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP36181.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914453; KDP36181.1; -; Genomic_DNA. DR RefSeq; XP_012074390.1; XM_012219000.1. DR GeneID; 105635876; -. DR KEGG; jcu:105635876; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 40198 MW; 6364DF3A7BCE465D CRC64; MSINHFSQDL PENLWWSQQQ QQNLIMEPNP NSSPSSKPNN PLISTQNSSF PSNLYSFSYN LQRHSHHPMF SPATQNDDEE LQDPEEEQEG GPVLQQIAKE TMFEKPLTPS DVGKLNRLVI PKQHAEKYFP LGPDSVDNKG LILSFEDELG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDVVLFE RHRTDGERFF IGWRRRGDNS NNNNNSSGGV MVQGSGGVLW SRRLYSSSGH QPYQHGHGAN VTSTVPYQPD CLHAGSSGQN QTTALGNSKR LRLFGVNLEC QLDESEPSTP DGSSSLSSQG LTQQQQQQEE MYSFHSGYSS SSNSCHNHMD ITISRDVNQM RNRRG // ID A0A067KJ35_JATCU Unreviewed; 212 AA. AC A0A067KJ35; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP31849.1}; GN ORFNames=JCGZ_12310 {ECO:0000313|EMBL:KDP31849.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP31849.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP31849.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP31849.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914593; KDP31849.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 23616 MW; 30D049FD13D12A02 CRC64; MGQSNFQVVI LDKSAVEIQY PYDRVCAAEP KHDWDFQEAK AQANEENISV EALDDQSLKK IRIDSTSKTP NISLSGNLPT CTSAHGHGDL KQDQQAKRRS CSSTSSALEA VNNFVSENPF FKAVVNTRCP SICVPISFSR SYVQGQQVSL TLQVSDRSWT VKFVKRAPGK PGRITFGWPV FIKENLLGDG DVCIFELIEK KLLKVSIFRC VK // ID A0A067KLD5_JATCU Unreviewed; 945 AA. AC A0A067KLD5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_08238 {ECO:0000313|EMBL:KDP36947.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP36947.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP36947.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP36947.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914420; KDP36947.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 831 915 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 945 AA; 104124 MW; 9A74CFADE05B9F9B CRC64; MGSVEEKIKA GGLVNGAQTN LLEEMKLLKE IQDHSGTRKT INSELWYACA GPLVSLPQVG SLVYYFPQGH SEQVAVSTKR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIYAQMSL QPVNSEKDVF PIPDFGLKPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM QPPTQELVVR DLHDNIWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRDEKSQ LLVGVRRANR QQTTLPSSVL SADSMHIGVL AAAAHAAANR SPFTIFYNPR ACPSEFVIPL TKYRKAIYGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD ESGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLHSGM LGGETEWSNL IKRPLIWLPE HGNGNFPYSS IPNLYSERLY KMLMKPQVNY PGICESALQE LCAAKATPVD DVKTMQGPIN QLNQSVGMSV ENQNYSQFCA NQSDVINPSA SKINTPGNLH PPCTVENQTP DGINVEKLKS EPEHSADQIS QVTSTGECNE EKTSSSPTNL HNCSNQLEFQ NQNQAHLHAQ TNVWPMQQLL EPSTLHSQQI NIPQADSNVL NGSLPFLDTD EWISNPSSCI PLPGIYGSSG PLSMFGLQEQ SSILPEAINP SLPLMNQDLW DQQLNNLRFL SPPSQLVPLA QQDLCSLNSS GAKDLSDESN DQSGIYGSLS VDVGNGGSAV IDPSVSNTLL DELCTSKDAD FQNPSDCLVG NLSSSQDVQS QITSASLADS QAFSQQDFPD SSGGTSSSNV DIDKGNYMQN NSWQQVAPRV RTYTKVQKAG SVGRSIDVSS FRNYEELCSA IECMFGLEGL LNNPRESGWK LVYVDYENDV LLIGDDPWEE FVGCVRCIRI LSPSEVQQMS EEGMKLLNNA NINGLNPSVT EGSHA // ID A0A067KP61_JATCU Unreviewed; 899 AA. AC A0A067KP61; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_04659 {ECO:0000313|EMBL:KDP38016.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38016.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38016.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38016.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914370; KDP38016.1; -; Genomic_DNA. DR RefSeq; XP_012072177.1; XM_012216787.1. DR GeneID; 105634029; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99463 MW; FF24E8AADDBE6D1E CRC64; MRLASAGFNP QTQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDT YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD DLGMNSPLMW LRGDGDRGIQ SMNFQGLGVT PWMQPRVDAS MLGLQTDMYH AMAAAALQEM RAIDPSKPSN TSLLQFQQHV NLPSRTAALM QPQMLQSSQP QQAFLQSVQE NQHQPQAQTQ TQSHLLQQQL QHQHSLSTQQ QQQPLPQQQQ LVEHQQIQNV VSSISQFASA SQSQSPPLQA ISSLCQQQSF SDSNGNPVTS SVVSPLHSLM GSFSQDETSH LMNMPRTNPL MTSSAWPSKR AAVEPLISSG APQCVLPQVE QLGPPQANIS HSSVSLPPFP GRGCSLDQEG ADPQSHLLFG VNIEPSSLLL QSGMSGLRGV GSDSDSTTIP FSSSNYMSTT GSDFSLNPAM TPSSCIDESG FLQSPENVGQ VNPPSRTFVK VYKSGSFGRS LDITKFSSYN ELRSELARMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWPEFVNSV WCIKILSPQE VQQMGKRGLE LLNSVPIQRL SNGSCDDYAS RQDSRNLSTG ITSVGSLDY // ID A0A067KQ43_JATCU Unreviewed; 1133 AA. AC A0A067KQ43; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF19 {ECO:0000313|EMBL:AQQ80641.1}; GN ORFNames=JCGZ_07520 {ECO:0000313|EMBL:KDP33949.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP33949.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP33949.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP33949.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). RN [2] {ECO:0000313|EMBL:AQQ80641.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=28102350; DOI=10.1038/srep40844; RA Sun Y., Wang C., Wang N., Jiang X., Mao H., Zhu C., Wen F., Wang X., RA Lu Z., Yue G., Xu Z., Ye J.; RT "Manipulation of Auxin Response Factor 19 affects seed size in the RT woody perennial Jatropha curcas."; RL Sci. Rep. 7:40844-40844(2017). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KX988008; AQQ80641.1; -; mRNA. DR EMBL; KK914539; KDP33949.1; -; Genomic_DNA. DR RefSeq; XP_012077093.1; XM_012221703.1. DR GeneID; 105638003; -. DR KEGG; jcu:105638003; -. DR KO; K14486; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1006 1099 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1133 AA; 126401 MW; CBB9672799C360CA CRC64; MKAPPNGFMS NSAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP VSKYDKEALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFAVFYNPRA SPAEFVIPFS KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYICPPPFFR PKFPRQPGMP DDESDIENAF KRAMPWLGDD FGMKDSPSSI FPGLSLVQWM SMQQNNQFPA AQAGFFPPML PSNALHNSLG SDDPSKILNF QAPGLSVPSL QFNKANPQNQ VSQLPQTSMA WTQQQQLQQL LQSNVNQQQP SNPQQQQQQP HPQQQQQRQQ PQPTQQQLNQ QQQPQPQPQP QPQPQPQPQP QSQQIRQQPP QLQLQQQQQI FQSPPVNNGV VTSNQIPNQN LQQPIVYSQL QQQQLLASNN QSQNIPSANK NSYPLTSLPQ DPQFQQQMEQ QSNLLQRHQQ QTQLQQSPLQ LLQQNLSQRA QPQSQSQPQA QQLSQPGLSD QQLHLQLLQK LQQQQQQQQQ QQLLSPSSSP LQPQLIQQQT HQQNLQFQQS TISQSQQQPL GSNSFSTAAL MQSQSFPVSQ HHALQKSPTI RAHSTLTDGD APSCSTSPST NNCQIAPSNF LNRNQQAPAI LMGDSVIEPA TNLVQELNNK SDIRVKHEFP GSKASDQLKY KGTITDQLEA SSSGTSYCLD AGNIQQNFSL PTFGLDGDVQ SHPRNSLPFA TNIESLAPDT LLTRGYDSQK DLQNLLANYG GTPRDIETEL STAAISSQSF GVPIMPFKPG CSNDVAINDS GVLNGGLWAN QTQRMRTYTK VQKRGSVGRS IDVTRYKGYD ELRHDLARMF GIEGQLEDPQ SSDWKLVYVD HENDILLVGD DPWEEFVSCV QSIKILSSAE VQQMSLDGDL GSMPVPNQAC SGTDSGNAWR GHYDDNSAAS FNR // ID A0A067KQC9_JATCU Unreviewed; 534 AA. AC A0A067KQC9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38416.1}; GN ORFNames=JCGZ_04341 {ECO:0000313|EMBL:KDP38416.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38416.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38416.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38416.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914362; KDP38416.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 196 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 431 527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 196 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 431 527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 534 AA; 59689 MW; B9082C1DAD3FC27D CRC64; MEGRTSGSVS LTGPSGNIWP VNLIQENDNI FLDHGWPTFL KDHFIECGDV LVFRYDGELC FTVQVFDLSA CEKEAAFHTK CSQDPSQFYR SIGQKREREE EAASSDKSDE CVTKKVKGES SEHLEHVDAA TRKCQEESSS HKMKQYEGNC NEIPDATIQN RIGKEGKNMP DRGYGSIFSE REKRVAQSFI SCFPYFVRIM KRFNVSGSYT LNIPYQFSTA HLPDCKTEIV LRTIKGECWT VNSVPTTRVH TSHTFCGGWM AFVRSNDIKL GDVCIFELVR KHELRVFILR VGREFLENQG GKVASDGVSV GCNAISHKIE SFPKKSRRTA LKLHSRLISK VEICDKKGSN KSQEATFSNH TRKHDKATKV SASGALCTQS KLGNEKLDVA IRSGKNLDIE LSSHAGASVK MMVALGEKDA AKSFTSAFPN FVRIMRKFNV SGSYTLKIPH KFSAAHLPNS KTEIILRNLQ GKRWTVNSVP DSKGRAVHTF CGGWMAFVRE NDVKMGDICI FELVSKCEML VHISGVGDEA FCPS // ID A0A067KQK2_JATCU Unreviewed; 336 AA. AC A0A067KQK2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38417.1}; GN ORFNames=JCGZ_04342 {ECO:0000313|EMBL:KDP38417.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38417.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38417.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38417.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914362; KDP38417.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 38831 MW; 3576CD9238CE15FC CRC64; MGEEPRKDCR SWEEDIYWSH FQYIHFSQFL HAGFEQRLAI PEKFARNLKS KLPDTVNLKS PCGALWEVSL TANENTLFFD QGWQEFVKDH SLQENDILVF KYNGESRFDV LVFNGQSMCE NAASYFLRKR EHEEHDIGCQ TKRKNSQNSA EVVITSPGDG SGSSLPKKPR NKEIYTPVIV NKKAQRGIKF NSPTVRMRGT DTSTEDAEVK PDIDRKKKVL QAAQATLTHE GFIAVMKPTH VSRKFFMNVP YAWITKHIAC REKQLVTLRI KEKTWTMRLL CYRKDRNRQR GGLAGGWKNF VVDNKLHESD VCVFEPGSLT DKEIILDVNI FRVVPL // ID A0A067KR20_JATCU Unreviewed; 372 AA. AC A0A067KR20; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38666.1}; GN ORFNames=JCGZ_04019 {ECO:0000313|EMBL:KDP38666.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38666.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38666.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38666.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914358; KDP38666.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 127 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 194 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 127 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 194 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 42918 MW; CF6D5A2481BECBC0 CRC64; MSQKDRKESM NFYFCWSLHE SWLRNMIGKE TMSVISSGET SLTEEVSDSI SSTYPLQASK RARHGGNVCT SKFRGVVPHQ NGNWGCQIYA NHQRIWLGTF KSEKDAAMAY DSAAIKLRSG DCRRNFPMTN ITVQEPNFQS NYSAEAVINM IKDGTYQSKF ADFIRTCLQS VETELKLMPV KTQSTRRLTC KQLFQKELTP SDVGKLNRLV IPKKFAMKFF SRISESSEGN VVGANKLDDG QLSFYDKNMK LWKFRYCYWR SSQSYVFTRG WNRFVKEKQL KANDTIVFCL CECWENSRVG QGYYMIDVNN VERSIGLMES SNQNDAMGME LQLHLGQSAV CDYVRGERLM EAKPRHDDTN RKSFRLFGTQ II // ID A0A067KRH6_JATCU Unreviewed; 148 AA. AC A0A067KRH6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38806.1}; GN ORFNames=JCGZ_04963 {ECO:0000313|EMBL:KDP38806.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38806.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38806.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38806.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914355; KDP38806.1; -; Genomic_DNA. DR RefSeq; XP_012071372.1; XM_012215982.1. DR KEGG; jcu:105633393; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 17127 MW; 0740FB8714AA1B7C CRC64; MANPKLDPEI KSNSIDILCE KLLKKTDLGH QFIAPSDLLK KPEVFYETGK LKEKITSFDQ DGKEWTFRLS IRKTEKYPKP TLTPASWHPF VKHFGLRGGD AVIFYVIRND GARKIQIRGL RKIIFLGKPT WEEVKKVENQ ASTSHYRV // ID A0A067KRR4_JATCU Unreviewed; 122 AA. AC A0A067KRR4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38802.1}; GN ORFNames=JCGZ_04959 {ECO:0000313|EMBL:KDP38802.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38802.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38802.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38802.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914355; KDP38802.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 14206 MW; 778FBEA13C22C866 CRC64; MDILCEKSLT KTDLEHQFVV PIDFLKKHAV RDENGDLKKK IPSFDRDGQE WKFQLAIRKD GHPKPTLTPA SWHPFVKHFG LQEGDVVRFY IIRNEGARKI QIQAWREIVI LGTSAWAEVE KV // ID A0A067KTW3_JATCU Unreviewed; 361 AA. AC A0A067KTW3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38418.1}; GN ORFNames=JCGZ_04343 {ECO:0000313|EMBL:KDP38418.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38418.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38418.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38418.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914362; KDP38418.1; -; Genomic_DNA. DR RefSeq; XP_012071732.1; XM_012216342.1. DR GeneID; 105633705; -. DR KEGG; jcu:105633705; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41396 MW; 299D7238F135BA18 CRC64; MGEEACGDCR SWEEEMYWTH FQCLHFSQFL HAGFDRKLAI PEQFTKNLRK KLPKTITLKG PSGNTWQVGL MTFHDIVYFI YGWQEFVNDH FLQEKDLLIF KYNGDSCFDV LIFDGQSLCE KAASYFVRKC GHRTPDSSCQ TKRKIGESSA EGTLPYPEDI AGGSPPEKSA NNDFDTTPSG QPVTFRATAK KTRREIEFNP VHEEPSTSEE IDVKPDIEHV SPSVVHDVPY ISSRRLVTDE EKQNALQLAQ AAITREGFMV VMKPTHVHRR FYMSIPSAWM SKHLSTLEKQ DVILRVKENT WNTKFYYQRS KNSGGLSSGW KNFAIANDLN EFDVLVFEPA SPVNDAIVLD VNIFRVLHED Y // ID A0A067KWZ2_JATCU Unreviewed; 830 AA. AC A0A067KWZ2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_09784 {ECO:0000313|EMBL:KDP36369.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP36369.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP36369.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP36369.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914439; KDP36369.1; -; Genomic_DNA. DR RefSeq; XP_012074114.1; XM_012218724.1. DR GeneID; 105635646; -. DR KEGG; jcu:105635646; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 725 809 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 830 AA; 93184 MW; A193143565D3AC4D CRC64; MKLSTSGLGQ QGHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT FLPMELGMPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLRRPWHPG PSSLHDNRDE AGNGLMWLRG GTGEQGLHSL NFQAVNMFPW TQQRLDPALL GNDQNQWYQA MMASGLQNMG NGDPLRQQFM QFQQPFQYLQ QSSNHYPMLQ MQQQHQTIQQ SNSHNLMQVQ NQISTEALPR HLLQQQLNNQ PDDQAQAQQQ QQQHNYHDAL QIQGEQLQRQ QSNVPSPSFS KTDFMDSSAK FSASTTPIQN MLGSLCAEGS GNLLDFTRTG QSTLTTLTEQ LPQQSWVQKY AHSQVNAFTN SVSLPRSYPE KDPSMEPENC NLDAQNATNF GVNIDSSGLL LPTTLPRFAT SSVDADVSSM PLGDSGFQNS MYGGVQDSSE FVQSAGQVDP PTSSRTFVKV YKSGSVGRSL DISRFSSYHE LREELAQMFG IEGKLENPHR SGWQLVFVDR ENDVLLLGDD PWEAFVNNVW YIKILSPEDV QKLGEQGVES FSPNVSQRIE // ID A0A067L1H9_JATCU Unreviewed; 466 AA. AC A0A067L1H9; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42311.1}; GN ORFNames=JCGZ_01635 {ECO:0000313|EMBL:KDP42311.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42311.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42311.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42311.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914308; KDP42311.1; -; Genomic_DNA. DR RefSeq; XP_012066892.1; XM_012211502.1. DR GeneID; 105629854; -. DR KEGG; jcu:105629854; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 106 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 409 457 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 466 AA; 52558 MW; D8B36DF7BC506217 CRC64; MDAQEDQAST PSPPSQSKQI TIYSYPKTRK RKSQGSKTKL TQIHDDSPQP KSGTELVLYD KSGKSTSYKP KRAVVNDFYD NSESKSSAME RAEEIQASLE ASFPSFAKAL VRSNVTVGFW MHLPMRFCKL HLPKNDTTVF LETEDGEEHI VNYIAERTAL SGGWKAFCST NMLHEGDVLI FHLLKPLRFK VYIVRGTGTA KANGELDSLK VDAPEEQIKF VDKDIESNKR TKNLDVSPVG LMQEQNEEKS LMILKEGHGA NQSDNENEDQ ESKLLEVTTS SGSVINFKDI DSIESFSVLV NDLAVDSELS DHHRTKYYEL CCSQSSFLHD NLLKSINYKL AAEIIIGTVN ISEAIRASTL SNSHADFAVW DKTLKGFELL GMNVGFLRSR LNRLMSLATE SEEAVESECR EVRLEQARID EEMKSLELKL TELKEERERL DAEIEALKVN AEKHELMFQE AVNAPW // ID A0A067L1Q2_JATCU Unreviewed; 271 AA. AC A0A067L1Q2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38415.1}; GN ORFNames=JCGZ_04340 {ECO:0000313|EMBL:KDP38415.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38415.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38415.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38415.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914362; KDP38415.1; -; Genomic_DNA. DR RefSeq; XP_012071729.1; XM_012216339.1. DR GeneID; 105633702; -. DR KEGG; jcu:105633702; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30706 MW; 4F65446F514EB06D CRC64; MPTESLSGKR SQRWSSSMAG IHKLPVRRHF FKVMMGDFRT KLSLPLALRG QLKGEKAVVR SSKGLWHIKV GKCSKGLLCF EEGWGDFVKH HDINFEDFVV FEHKGNMFFD ALVFDSSSCE KEFLISNNSA NNKKKNKEKV NNLHTGESPL EAARSCSPKT PHFITTIEAS NVADAGSYLH IPEEFAKSIN LVRSSILILR NSSRKIWPVK LSAIRDSKCK AARVLMKKGW ADFYVDNKLK EGDVCLFELD LSRKETSRAL IMDVQIFPLL I // ID A0A067L1V4_JATCU Unreviewed; 122 AA. AC A0A067L1V4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42402.1}; GN ORFNames=JCGZ_00199 {ECO:0000313|EMBL:KDP42402.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42402.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42402.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42402.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914298; KDP42402.1; -; Genomic_DNA. DR RefSeq; XP_012066769.1; XM_012211379.1. DR KEGG; jcu:105629735; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 14136 MW; 0204434E3D1647AB CRC64; MDILCEKSLT KTDLEHQFIV PIDFLNQPAV RDENGELKEN ITSFDRDGQE WRFRLAIRKN GHPKPTLTPA SWHPFVKHFG LQEGDVVKFY IIRNEGARNI RIQAWRKITI LGTLVLAELG KV // ID A0A067L2T4_JATCU Unreviewed; 148 AA. AC A0A067L2T4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP38805.1}; GN ORFNames=JCGZ_04962 {ECO:0000313|EMBL:KDP38805.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP38805.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP38805.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP38805.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914355; KDP38805.1; -; Genomic_DNA. DR RefSeq; XP_012071371.1; XM_012215981.1. DR KEGG; jcu:105633392; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 17223 MW; 569465765D9600FC CRC64; MTKLDPEIKS DSIYKLCEKP LTKTDLEHQF IVPSEFLNEP AVLNESGEFK QKITSFDQDG KEWTFRLSIR KNEIYSKPTF TPASWRPFVK YFGLRDGDGV IFYIEKDDGA RKIQIRGLRK INCMLLGNRP WAEVKKVENQ ASTSHYKA // ID A0A067L3P5_JATCU Unreviewed; 329 AA. AC A0A067L3P5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP41838.1}; GN ORFNames=JCGZ_26856 {ECO:0000313|EMBL:KDP41838.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP41838.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP41838.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP41838.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914317; KDP41838.1; -; Genomic_DNA. DR RefSeq; XP_012067564.1; XM_012212174.1. DR KEGG; jcu:105630373; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 36690 MW; 1BAD3F58510F1A8B CRC64; MMKEQGAGHE KPEARAWMAG GDVVTVEGDK ADDSTTTTNS ITDDDGSDRI GLTRNEVVAA VLGFGVIRKK RMPRQRRPSS AINHLFSFAN AASASSSTNI TTTATSHVPS PPLHHLPSFP ARGLLSAEVI DQRRLSFLFQ KELKNSDVSS LKRMILPKKA AEAHLPVLES KEGIFISMDD LDGLHVWSFK YRYWPNNNSR MYVLENTGDF VNTHGLQLGD FIMVYKDMQN QNYVIQARKA SDEDVYANIA MTAVNDIFLH DYEVNKSSSF YMNYPMVDNT GLSFIYDTTT IISNDSPLDF LGGSLTNYSR IGQMENFGSV ENLSLDEFN // ID A0A067L522_JATCU Unreviewed; 227 AA. AC A0A067L522; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42308.1}; GN ORFNames=JCGZ_01632 {ECO:0000313|EMBL:KDP42308.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42308.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42308.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42308.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914308; KDP42308.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 140 171 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 227 AA; 26260 MW; 5A00C77BFF936AA8 CRC64; MRSYGSYRRR DLNNRIYASD DLREAAIDRA EQLQSSLEPG FPSFVKPMTQ SHVTGGFWLG LPVQFCKDNL PKRDEYIILE DENGDTSESK YLVEKTGLSA GWRGFAIDHK LVDGDALVFQ LVSPKEFKVY IIRAYELGDN EDKENEEVEL IEDNDNEDKE HKEEMNKVNK DLDVAPLDRR SSKRIKAKVE INGDKENKEE INEDNKKDSD ITQLDRRSSK RIKASRK // ID A0A067L598_JATCU Unreviewed; 148 AA. AC A0A067L598; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42408.1}; GN ORFNames=JCGZ_00205 {ECO:0000313|EMBL:KDP42408.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42408.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42408.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42408.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914298; KDP42408.1; -; Genomic_DNA. DR RefSeq; XP_012066773.1; XM_012211383.1. DR KEGG; jcu:105629739; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 17272 MW; C76BC1EB77620011 CRC64; MANTKLLPEI KSDSIYKLCE KPLRKTDLEH QFIAPSDFLK KLADLDENGE SKEKITSFDR DGKEWTFRLS IRKTEKYSKP TLTPASWRPF VKHFGLRDGD AVIFYIIRHD GARKIQIRGL RKIIFLGKPT WKEVKKVENQ ALTSHSRV // ID A0A067L6E1_JATCU Unreviewed; 707 AA. AC A0A067L6E1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_05508 {ECO:0000313|EMBL:KDP44041.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44041.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44041.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44041.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914256; KDP44041.1; -; Genomic_DNA. DR RefSeq; XP_012064809.1; XM_012209419.1. DR GeneID; 105628083; -. DR KEGG; jcu:105628083; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 594 674 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 707 AA; 77834 MW; 0D3B484A2A634C28 CRC64; MKELDKGLDP QLWHACAGSM VQIPPINSKV FYFPQGHAEH SQSPVDFSSS PRIHALILCR VAAVKYLADS ETDEVYAKIS LFPLPNNELN FGEEMGICDN NNGNNTEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVVAKDVHGE VWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR AESGDLCLGI RRAKRGTGGN GLDSSPPSGW TSTTNGSCIN PYGGFSLFLK EDENKRNVGG LLRGRGRVRA EEVLEAAGLA ANGQPFEAVY YPRASTPEFC VKASSVRAAM RIQWCCGMRF KMAFETEDSS RISWFMGTVA SVQVADPIRW PNSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPVIHL SPFSPPRKKL RVPQHFDFPL DGQLQWQSFS GNPLGPSSPL CCLSDNTPAG IQGARHAQFG ISLSDLQLNN KLQSGMFLSS LQRFNSHSRI SESFVKGQTN SNENISCLLT MGNSNTNSDK SDNVKRHQFL LFGQPILTEQ QISCSCSTDA VSQVITGKTY SDESPEKAKI HDVLGSAPEK QTSPEKTAST GFSWQSSTET GLDAGHCKVF LESEDVGRTL DLSVLSSYEE LHSKLANMFG IERSEMLSHV LYRDAKGAVK QTGEEPFSVF TKTARRLTIL MNPAGSDNNG RPWVTGMRRA ENGLEASNKT GPLSIFA // ID A0A067L738_JATCU Unreviewed; 319 AA. AC A0A067L738; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP39924.1}; GN ORFNames=JCGZ_03455 {ECO:0000313|EMBL:KDP39924.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP39924.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP39924.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP39924.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914336; KDP39924.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 91 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 151 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 91 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 151 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 319 AA; 37594 MW; 80D668B87DFE02A4 CRC64; MELEWHSDSS MSSNSNIISN NQRMKENYSS TSTWSKYRGV IWLKSGKWGA RIAFRYKAYW LGTYDTEEEA GMAYDRACIK LQRSDAPLNF PMHMYSVQET KFQSHYSNED ILDMIKDKSY LSKFEKYIAD QSLVSELGGM AQRGLSYRML FRKELTQTDA THIKGFHIPK EYAIEYFPPL SAGDENENKS IELTFYDKHS CPWTFRYSYW KSTQTFVFTK GWRHFLKMNN LKPKDCVFFY RCEHQKESQG RGFYYMIDAQ RVSVDGDSGN VDKARQLMRK KLNNEELVED MEEEKTSNNN GVMLFGVQIG KTSEYKQFI // ID A0A067L932_JATCU Unreviewed; 460 AA. AC A0A067L932; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44971.1}; GN ORFNames=JCGZ_01471 {ECO:0000313|EMBL:KDP44971.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44971.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44971.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44971.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44971.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 460 AA; 52588 MW; 453859451D2A0422 CRC64; MASGSDRDNE RSFFRPITPH FFKIILDDTI RDGKLIIPRK FLREYGNNLP NKVVLKVPSG ATWQIELMKC DGEICLQKGW QEFVEYYSIA CGHLLVFEYE KTCHSFYVLI FDKSASEIDY PFSFTNGDNE LKDPEIGKTE EESPLPFLHI SKKVKLENSE EQSEEKKCHE SKSSENQKEN VVPPKIQSLT AKGKASALRR AKTKFKSRNP FFMVAMQPSY VRGRSKITIS ATFARKYFEK MQGKVILEDG NGRVWSARHV RRGKKASIDN GWRKFSEDNE LEVGDVCVFE LVNAAKTKLK VTIFRHNKDT DRKTPVGDVG YVTKESYSRI CPAFVDHSSF AFSFAKDESV QRTLNKKRQR CRGKTHLQQF RKPKIRCLSF SLFKGKDQTT EWSTSTHDLT LLISNYKAKS TALGVLTDAS TFSFTQPLGG RCQRCSVPTT LPNSCEAFAC WKSTKQVRAI // ID A0A067L980_JATCU Unreviewed; 503 AA. AC A0A067L980; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44972.1}; GN ORFNames=JCGZ_01472 {ECO:0000313|EMBL:KDP44972.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44972.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44972.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44972.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44972.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 16 {ECO:0000256|SAM:SignalP}. FT CHAIN 17 503 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5001640286. FT DOMAIN 47 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 282 378 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 404 502 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 282 378 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 404 502 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 503 AA; 57556 MW; 169372F212DFE83E CRC64; MGCGSIWLMI IGFGTGLRRA LLEGTRPVAS GAIVNTCLPD CHEINENVVL NAQEGSVVNG ELGFPRKFVK EYGNSLSSPL VFKVPSGATW QIEMVNCDGT ICLQKGWQEF VEYYSIAYGY FLVFEYEKTC HFNIFICDKS ALEIDYPFSV TDGDHDKENN LEKELQKSKV AKSKDDAFTD NKENSIEKEL KEPKVEKSKT DDSVEVLDVE ESPNPFYRPS KKMKLENSAL QFEAKKCTRR MSGEKQKANE VSARTEPLAM NRKVNNALQR AKAEFKSTKP YFMVELRPSY VHNGTRVSIK ASFARKYLKT GRGDVILNDV NGRVWSAKYA KHGKLGSKIF EGWREFSQDN ELEVGDVCVF ELINRFEITF KVVILREVKD DNKNSILGKS KVRHEKEIIS KNPSFKTIIR PGHLDQRCVY VPVEFMAECR QRKFTGNLTL EVENKRWLVK VINYDQPHCQ GKLSAGWWLF AKENYLQEGN VCIFELIDGE TMLIKVKIVR HVH // ID A0A067L9U6_JATCU Unreviewed; 230 AA. AC A0A067L9U6; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP45182.1}; GN ORFNames=JCGZ_15047 {ECO:0000313|EMBL:KDP45182.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP45182.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP45182.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP45182.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914233; KDP45182.1; -; Genomic_DNA. DR RefSeq; XP_012085562.1; XM_012230172.1. DR GeneID; 105644721; -. DR KEGG; jcu:105644721; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 26715 MW; DD775473102847BA CRC64; MEPVYPEELK EDTAAALTLS SLKHTKFDKK TLSTLHAMKS NFLNHRPSSL TSQPQVQDFP GSRAIIRQLT GQPRSLLQLK IDNYRPADIP PIAKLKGQIG RCSKPFEKQL TSSDVRSDQS RLTLNKAYVE RSILPLLNRE EGNLDDGIKV TIYDPEGNEY PMTLKMWASK VYVLMGGWKE FYQKQKLREN EDFVTTWFFY NVRTRKFCFA INWRRLPIFA PIKRKVIQNS // ID A0A067LB89_JATCU Unreviewed; 843 AA. AC A0A067LB89; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP45706.1}; GN ORFNames=JCGZ_17313 {ECO:0000313|EMBL:KDP45706.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP45706.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP45706.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP45706.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914227; KDP45706.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 423 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 600 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 322 423 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93167 MW; B29686D2402F87D7 CRC64; MKICMNASCG NTTTHEWKRG WPLRSGGYAH LCYTCGSAYE NSVYCDTYHL EESGWRECYI CKKRLHCGCI ASKSLLQLLD FGGVGCTSCA TNYRLHPIRS DEIPNGFGLL INNACDLEST PLENRVAGRT FDEGKLAQLC RLMEANAPNL LCQSEGADTN AGLGQFRQEE VMHQIVEASP GFSAAAQSSA GQSKFAHPSI LDMRDIHGSH AQPSLSMSLG APSGTASFVP YPCGVVEGKE QCKTSPFQQG QRSRPILPKP SKPVLAGSSE TNKAAVSELR IARPPAEGRG KNQLLPRYWP RITDQELQQL SGDLNSNIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGLPLR IQDVKGREWT FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTITFSRID PGGKLVMGFR KATNNSLDTQ DAQTSAIPNS AAITETSFSA DGDIGWNKSE NHGGRVNGDA LLQSTSEKKR TRNIGPKNKR LLMNSEDALE LRLTWEEAQD LLRPPPSVKP SIVTIEDHEF EEYDEPPVFG KRTVFADQPS GGQEQWAQCD DCSKWRKLPQ DALLPPKWTC SDNVWDSSRC SCSAPEEMSL KDLDYLLRVS KDLKKRRIVE RRKASPECER SGLDALASAA VLGDNICDTG EPSVGDTTKH PRHRPGCTCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMLRKKKRQS EREAEISQKV DNNDCKDDSE MSPTDKLDNE RNPNRKQTEV AETSAGQIDL NCHPNREDIQ MDIPGLSIMD LADAANMPFD NYIKQNGLSS LMCDRQASLG SCSHSQSNGE NLRRLSDEAF LASIGWDRES RGD // ID A0A067LCH7_JATCU Unreviewed; 177 AA. AC A0A067LCH7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP46181.1}; GN ORFNames=JCGZ_10021 {ECO:0000313|EMBL:KDP46181.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP46181.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP46181.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP46181.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914219; KDP46181.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 177 AA; 20624 MW; 5FAA5811463CC12C CRC64; MARRPSAGGG RSWRSCWPSI KRGRGRPFGK SNPSSESIPS KLFVKRLGIE LSDIARTARL SLRDGKVWEV EVTKNDKYIW FDKGWSDFVE DNSICHRYLL SFDYKGNSNF HVIIFDPSTF EINYPNSDFE NENEKVGREN HDPERDDFRK RTKLDQARGK MTMTEMRCAC KECKSKL // ID A0A067LCJ3_JATCU Unreviewed; 438 AA. AC A0A067LCJ3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44968.1}; GN ORFNames=JCGZ_01468 {ECO:0000313|EMBL:KDP44968.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44968.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44968.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44968.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44968.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 360 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 360 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 438 AA; 50875 MW; A6A436AF0DFFA9E8 CRC64; MASPPSGKDN QNLLFKTHKP HFFKVVLDNA LRDRKLEIPK EFVRKYGNDL PSSVVLNVPT GAKWKVELFK CDGEIWFRNG WQEFAEYYSL AHSYFIVFEY DQHSNCHFNV LILDKSATEI DYPVNYNGDD EEINNLEKAE NGSPHKKTKI EKPTTKFEPK RGDAEKPRKR KKFKKAVLKA QKLAHDEKEV LLQKARMVFY SKNPFFMVAM QSSYVHKGER LHISSSFAKR HLNEKHGDGT LKVMDGRTWS IRYHVETSRG RPRVLVYSGW NKFSRENHLE VGDVCVFELT NPAATTMNVT ILRYSKNANS NPSLGNKKLK HEEETSNCQQ FNRWASFQND SSRYPFFKVV IQPCNLRSPL NIPMKFVIEH TKQTTEDVIL QIENRRWPVK LLSYPSQSKL SAGWISFAKE NSIRVGNVCI FELINSESTL FKVSIVRK // ID A0A067LCJ8_JATCU Unreviewed; 309 AA. AC A0A067LCJ8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44973.1}; GN ORFNames=JCGZ_01473 {ECO:0000313|EMBL:KDP44973.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44973.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44973.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44973.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44973.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 167 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 167 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 35103 MW; 1D7E601EB9F0DE39 CRC64; MASLPKREDV NLMLEADKPH FFKIILQDSI RGGKLGIPKK FAIKYGDKLP SSIFLKVPTG AKWRVELIKC DGEPSYVHPG KKLAIPNAFS RKYFKQKRGA AALSTFEGKT WSAEFYYIVH KGRTSAKLLN GWKKFAQENH LEVGDVCAFE LINQTKITFK ITIFRHDQGN KKQPVGEKSN SREKFIQEYP SCSNLCVAIK AAKEFTSIHP FFKAVITASH LGRANVHVPH DFLSEMQQSK EKAKLQVGNR RWDVKLNLYA NKMKHRGVLS AGWCQFAREN SVQVGDVCVF ELIDNQAVVM KVSIFRNVQ // ID A0A067LCQ1_JATCU Unreviewed; 401 AA. AC A0A067LCQ1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP46177.1}; GN ORFNames=JCGZ_10017 {ECO:0000313|EMBL:KDP46177.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP46177.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP46177.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP46177.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914219; KDP46177.1; -; Genomic_DNA. DR RefSeq; XP_012069205.1; XM_012213815.1. DR GeneID; 105631633; -. DR KEGG; jcu:105631633; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 46340 MW; 861273A1A3786714 CRC64; MPRPYFHKLI LSNTIKDRKL RIPDNFVRKF GNDLSAFGRL SVPGGPVWPV GLIKADDKFW FHEGWQEFME RYSIRIGYFL VFRYEGHAVF TVHIFNLSAS EINYQSNALS GRRYLVFEEM EDDDFIEHLS SSSPCLIPNS LKSKVFDERL DQMTIKKSCN PPALQNLFHE SKLNYINWSG EGNLHLSKGA SISHMVDQDT RDVGVQFNAI EGKNCIEDVK FYSPDGVGEM QKPKKQGRKK RKLDPNEQHP SSQQEDEADV RFRFYESASA RKRTVTAEER ERAINAAKTF EPVNPFCRVV LRPSYLYRGC IMYLPSCFAE KHLQGVSGFI KLQFSDGKQW PVRCLYRGGR AKLSQGWYEF SLENNLGEGD VCVFELLRSR DIVLKVTVFR VLENAGRMNR P // ID A0A067LCQ8_JATCU Unreviewed; 280 AA. AC A0A067LCQ8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP46182.1}; GN ORFNames=JCGZ_10022 {ECO:0000313|EMBL:KDP46182.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP46182.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP46182.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP46182.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914219; KDP46182.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 185 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 185 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 32560 MW; A5DB1811F66B9A5B CRC64; MIMVRWPPAV QRRRPGLPPK VLSGRPCWES KPPAAESPRG FHFFRVIFQK MIEDKKLRIP LRLFVKRVGS ADQLSDMARL CVPNGNEWQV KITEYGKNED KTKYKNHETE CDDFRKRTML DQTRRKKPRT DNEMASSCKN NKNKEKMEVC CSKQYLKFSR IQSLSKEGRK KAILAADTFE PINPAFKVLL RSYNFERSML LVPSSFASKY MTRVYEEAEF VCPDGRKFGV RISLWGPGLA FGKGWAAISQ HIMLKEGDVV MLELINSFIG YLFKIRVFRS // ID A0A067LD26_JATCU Unreviewed; 148 AA. AC A0A067LD26; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42400.1}; GN ORFNames=JCGZ_00197 {ECO:0000313|EMBL:KDP42400.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42400.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42400.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42400.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914298; KDP42400.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 17022 MW; 52C51422D12177A5 CRC64; MAKTKLDPEI KSDSMDILCE KSLKKTDLEH QFIAPSDFLK KLADLDESGE LKEKITSFDR DGKEWTFELS IRKTGIYPKP TLTPGSWHPF VNHFGLRGGD AVIFYIIRND GARKIQIRGL RKIIFLGKTT WDEVKKVENH ASTSHYRV // ID A0A067LD31_JATCU Unreviewed; 140 AA. AC A0A067LD31; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 12-APR-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42405.1}; GN ORFNames=JCGZ_00202 {ECO:0000313|EMBL:KDP42405.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42405.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42405.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42405.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914298; KDP42405.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 118 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 140 AA; 15970 MW; 73BC24232394C6C2 CRC64; MAKTKLDPEI KSNSIDILCG KSLKKTDLEH QFIAPSDFLK KSAVLDESGE LKEKIPSFDR DGKKWTFRLS IRKNEKYSKP TLTPASCRPF VKHFGLRDGD AVIFYITRND GAGNIQIRGL RKDLAIFGKL IWTEVKRVEN // ID A0A067LD35_JATCU Unreviewed; 189 AA. AC A0A067LD35; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42410.1}; GN ORFNames=JCGZ_00207 {ECO:0000313|EMBL:KDP42410.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42410.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42410.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42410.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914298; KDP42410.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 167 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 167 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 189 AA; 22651 MW; 89FCF948AB227B92 CRC64; MARQLLFSKI LTKTDIETQL SIFTREQLPF EEGQLVNMHV YDDSDYEWIF PCTFQEDENV GRCLSIGWLE FARRKNLRDG DQIFIYEEVM SDNHRLVFDL KVKDIKGELW KFRFKCRKGI YQKPVLSKGW LQFVHNKDLR VGDKVVFYKK EEEAAKGVFH YKIEVKRKIL RLMGQDIWVD VENLNLYGV // ID A0A067LDD2_JATCU Unreviewed; 680 AA. AC A0A067LDD2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_00307 {ECO:0000313|EMBL:KDP42510.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42510.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42510.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42510.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914298; KDP42510.1; -; Genomic_DNA. DR RefSeq; XP_012066757.1; XM_012211367.1. DR GeneID; 105629726; -. DR KEGG; jcu:105629726; -. DR KO; K14486; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 554 647 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 680 AA; 75879 MW; 6B8A4834011863EB CRC64; MAYTSANHMP VGNLHTGGCN DALYKELWHA CAGPLVNLPR EGERVYYFPQ GHMEQLEASM HQGLEQHMPS FNLPSKILCK VVNVQRRAEP ETDEVYAQVT LLPDPDQNEV TSPDPPLPEP ERCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA SDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQTNMPSSV ISSQSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEARNH KLSVGMRFKM RFEGEEVPER RFSGTIVGVG DNISSGWVDS EWRSLKVQWD EPSSILRPDR VSPWELEPLI ATTPSNSQPV QRNKRARPSV LPSPTSDLPA FGMWKPPAES SGFSYGDSQC GRDLHTSNNF STVTRANSIG FSGNSPHTGF SPNSMYWPKR VESVTYSFAP AVNKDSGERR QGTGNGYRLF GIQLIDNSNA EETSPLVAAS GMVGDDRPVV SLDAESDQHS EPSNVCRSEI PSVSCEPEKS CLRSPQELQS RQIRSCTKVH MQGIAVGRAV DLTRFECYED LLRKLEDMFD IEGELSGSTK KWQVVYTDDE DDMMMVGDDP WHEFCSMVRK IFIYTTEEVK RLSPKIKFPV NEEGKAAKAD VDTDGAVTME DQSSIVGPGC // ID A0A067LE91_JATCU Unreviewed; 125 AA. AC A0A067LE91; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP42409.1}; GN ORFNames=JCGZ_00206 {ECO:0000313|EMBL:KDP42409.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP42409.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP42409.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP42409.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914298; KDP42409.1; -; Genomic_DNA. DR RefSeq; XP_012066774.1; XM_012211384.1. DR KEGG; jcu:105629740; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 125 AA; 14464 MW; 16084EC13493B6B0 CRC64; MANLKFFSKT LTKIDIERKL SVLLSSTGQL PFEEGQMMTL TVYDDSGCRW IFPCSIEEDG GSGRFLTLGW LEFVNKKNLR VGDKLIIHEE FMNNNSKGQA NPRTWNRIYV QRKIRLFGVD IWGNL // ID A0A067LFX3_JATCU Unreviewed; 426 AA. AC A0A067LFX3; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP46178.1}; GN ORFNames=JCGZ_10018 {ECO:0000313|EMBL:KDP46178.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP46178.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP46178.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP46178.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914219; KDP46178.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 322 417 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 322 417 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 426 AA; 49101 MW; FB6ACDFE93980F46 CRC64; MTDSQVDKCG GQFYKLMVPS ILQQKKLRIP KKFVVKKFGQ ELSGFATLTV PDVRMWLVTV TQIDQKLWFC NGWHEFIEHY SICVGHFLGF RYEGNSNFSV YMFVLMPHKI KDARTVTKPV KDDEKHHVLD EMEGDDSVKI LDCTPTCFSS DTCKPKNFNE CFNQNTMSKT CKAPLLHNAP KHMDWRNVDH KASHRPLGGS FKSQSSDQDS EDVRLQFFVD EENLHSSKNA DLAEKSSKPC QDVDIKLNSI EYESVKKIRK VHRKEQNIDS NDQQPSTHQE DEGHMRFGFY RNASARKRSV TAEERERAII AAKTFELVNP FCRVVLRPSY LYKGYIMHLP SCFAERHLHG LSGLIKLQLS DGKQWPVRCL YRGGGTKLSQ GWFEFSLENN LGEGDVCVFV LLRSRDIVLK VTVFRVLESA GRMDRL // ID A0A067LFX7_JATCU Unreviewed; 307 AA. AC A0A067LFX7; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP46183.1}; GN ORFNames=JCGZ_10023 {ECO:0000313|EMBL:KDP46183.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP46183.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP46183.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP46183.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914219; KDP46183.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 307 AA; 35564 MW; 218CA528FD1CD656 CRC64; MTRWPSAGGG RRGSPRWPST ERGRGRPFRK SNPSSDVTPR HFFRSILSKL FVKRLGIELS DIARIGRLSL RNGKLWEVEV TKDNKNIWFD KGWSDFVEDN SICHRYLLSF EYKGNSNFRV IVFDPSTFEI NYPNSNFENE NGKAESRTDK MMGKKEDRLV LSNENEKDEN KNVEVEVYCS EKYRKFFAKA SDEIKKAILD ADMYKPTNPA FKVLLRPYSI NRSFLLVPNS FSAKYMTRVY EEAKVACPDG RKFLVRIRGW GTVTGLAFGT GWARICQHID LKEGDVVILE LINSSMDFLF KIKVFRS // ID A0A067LHL5_JATCU Unreviewed; 787 AA. AC A0A067LHL5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_05557 {ECO:0000313|EMBL:KDP44090.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44090.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44090.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44090.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914256; KDP44090.1; -; Genomic_DNA. DR RefSeq; XP_012064855.1; XM_012209465.1. DR GeneID; 105628120; -. DR KEGG; jcu:105628120; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 747 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 787 AA; 86886 MW; BDE623D1DF39E619 CRC64; MEIDLNHAVT EVEKNAFCTT GDSSSSSCSS NSSPSPVSSS IYLELWHACA GPLTSLPKKG NVVVYFPQGH LEQVASSSPF SPVEMPTFDL QPQIFCKVVN VQLLANKEND EVYTQLTLLP QPELAGQNLE GKELEELGVD DEGAGGLPAK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGEDGEL RLGIRRAARP RNGLPDSVIG KHNSYPSILS LAANAISTKS MFNVLYSPRA SHAEFVVPCK KYMKSIMNPV CIGTRFKMRF EMDDSPDRRC SGVVTGISDL DPYRWPNSKW RCLMVRWDED IASDHQERVS PWEIDPSVSL PPLSIQSSPR LKKLRTGLPA TPPDNPITGG GGLLDFEESG RPSKVLQGQE NVGFVSPLYG CDTLNRPPDF EMRNPAHQNL VSNGREKANI SEITRARSTT YTGFAETDRF PKVLQGQEIC PLRSLTAKGD FNLGAWGKPN IGCGSFNVYH APRPNFYPLA AENLQNMYFP YGGLYKTSQD PRMRSYATDF PRENFQFGAP SIQTSVARDE VGKPNKSNEH KSQETISASP TIGVNLMNQK DNSFNRAGGG CKLFGFSLTA DSPAPNSQNS GKRSCTKVHK QGSLVGRAID LSRLNGYGDL LSELERLFSM EGLLRDPNKG WRILYTDSEN DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTIGVIGDDT QSCLDQAPVL MEASKSSSVG QPDSSPQ // ID A0A067LJC0_JATCU Unreviewed; 686 AA. AC A0A067LJC0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=JCGZ_20054 {ECO:0000313|EMBL:KDP44374.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44374.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44374.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44374.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914253; KDP44374.1; -; Genomic_DNA. DR RefSeq; XP_012093265.1; XM_012237875.1. DR GeneID; 105650910; -. DR KEGG; jcu:105650910; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 600 680 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 75450 MW; CF22710911342A25 CRC64; MIRDFGVMKS HREQLRVVAE KCLDSQLWHA CAGGMVQMPS LNSKVFYFPQ GHVEHAQGNV DFGHCKIPAM IPCKVSAVKY LADPETDEVF AKIGLIPLSD RDLVFLEADN DDGSFDGNAS SQEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLEYS AEPPVQTILA KDVHGEIWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD SIVFLRADNG DLCVGIRRAK RGIGGGNECP SGWNSFGGYS GFLREDESKL MRRNGNGNGD MKGKVRAESV IQAATLAANG QPFDAVYYPR ASTPEFCVKA SAVRAAMQIQ WCPGMRFKMA FETEDSSRIS WFMGTISSVQ VADPIRWPSS PWRLLQVAWD EPDLLQNVKC VSPWLVELVS NMPAIHLSPF SPPRKKLRLP QPPDFPLLGH FPMPSFTSNP LNSNSPLCCV SDNIPAGIQG ARHAQYGLSS ADLHFNKLQS SPFPVGFQQL DCAAQFSRIP SCKVLGNTEN NDDISCLLTM GNPTTASSKE NSETKTPHIL LFGQLIFTDQ QSFQSCSGDT NGNSSSDGNP EKMINLSDGP VSAFHQAIPL ENSSDEGSPW YQKTDLSLET GHCKVFRESD DLGRTLDLSV FGSYEELYGK LANMFGVKRS DMFSSVLYRD AAGATKHAGD EPFSEFLKTA RRLTILTDSG SDNIET // ID A0A067LJW4_JATCU Unreviewed; 533 AA. AC A0A067LJW4; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44970.1}; GN ORFNames=JCGZ_01470 {ECO:0000313|EMBL:KDP44970.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44970.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44970.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44970.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44970.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 436 533 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 436 533 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 533 AA; 60923 MW; 57FDE3479CF924D3 CRC64; MKDSCPGKGS ERLMFKADNP QFFKIILDDN NRKLKQPRRN LFKMKDSCPG KGSERLMFKA DNPQFFKIIL DDNNRKLAIP RKFIRSYGNY LSSPAVLKVP TGAKWRVGLN KCSGEIWFDN GWQEFVKYYS LAHGSLVVFE YDKKNCHFNV IIFDKSASEI DYPYDVSNGD TEEPNNLEKE FPKPKTEEET ETDVSVEILD GFSLSRKRKV KSPLPCSQPP KKMKPEKPSR NSEGLDFAAK KVNGGLFSEK QRLDGVVVRR QPLTAKEKAT AHHRANTNFK SENPFFIIAM QPSYVHYGAK LAIPANFVRN YFKQKRGKAA LSTLDGKSWS VEYYYCVSNG KATARLGNGW REFSEENNLE VGDICVFELI IRTKITFKVV ILRDSKRSSS SPSLGNSKKL KQEKNLSCRQ FIPRNSCSES PGATEAAKNF TSLNPFFKVL MKPCYLRSTT VNVPLTVVAK CTKQRVEYVT LQVENRRWPV KLVRDRSHGR RQKMSGGWIS FARENSLQEG DVCCFELINS ETMLLKVSIF RNV // ID A0A067LKU5_JATCU Unreviewed; 506 AA. AC A0A067LKU5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44969.1}; GN ORFNames=JCGZ_01469 {ECO:0000313|EMBL:KDP44969.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44969.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44969.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44969.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44969.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 506 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 506 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 506 AA; 58033 MW; 01AD8B2F8BEC5DA0 CRC64; MASSSSSRKI GHTFEPTKPH FFKVVLGHAI RDKKIDIPMR FAKKYGNYLP SSVVLKVPSG AKWQVQLIKS DGVIWLGYGW QDFSDYYALT LGSFLIFEYD KKNCYFNVII FDRSASEIDY PYIVNGDNER INNLEEAQND FCGQNLEDFL PNRKVKEESP ERINNLDRSA SEIDYPYIVN GNNERINNLE EAQNDFSGQN LEDFLPNRKV KEESPENPTR PKTCKKRKLE NPTRKFEGFN SAAEKGHGCY SGKNQLLTKI EKAIVLHRAR TAFKSENPFF MVAMNPSYVQ AGRKVHISAK FARKYLKEGG DATVNDMDGR TWCINYQRRE NGTSGGLFSG GWIKFSRDNH LEVGDVCVFE LVNPATDKFK VVIFRYNKDP SSSYPSPGKK RKLKHKEKES ANRCKKSKGP SIEGENRCTS RNPLFIKHVP LEFMEAHTKQ MKENVTLQVK NKSWAVKLLS HADRGFFSAG WFTFARENCL QAGDVCTFEL IDSRTMVFKV HISRNF // ID A0A067LKV0_JATCU Unreviewed; 472 AA. AC A0A067LKV0; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44974.1}; GN ORFNames=JCGZ_01474 {ECO:0000313|EMBL:KDP44974.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44974.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44974.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44974.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44974.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 369 466 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 369 466 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 472 AA; 53751 MW; 8E9968011CF34CD3 CRC64; MASLQKRDNI SLMFEADKPH FFKIILEDSV RDGKLSIPKK FARKYGDNLP SSTVLEVPSG KKWSIELIKS DDEIWFKNGW QEFADFYALA TGYMLVFQYD KKNSHFNVII LDKSASEIDY PYNNPEKELQ VPKSEEETHI DVSAEILYDL STSQKTRKKS PLSFSQPSKK MKVHHSTSND KAEKRNAGLF IGPQREDGVM ARKQPLRAEE KANVLQKAKI NFKSENPYFI VAVQPTYLGN RLAVPSTFAK KYFKQERGVA TLSTSDGKNW SAEYCNLAWN GIPLARLCNG WRKFVKENHL EVGDVCAFEL INRDNIELKV TVTRHVEEGN KEQSVGENST SRENTQESPA SDSPITVEAI TEFSSPYPFF KLVISASVLG RSNAHVPHNF VSKIQQKAVE AKLQVENNLW HVNLNIYRHY NANRGLFCGG WRQFARGNSL KVGDICVFEL IDDENAVFKV SIFRHVNQSL HA // ID A0A067LKX5_JATCU Unreviewed; 466 AA. AC A0A067LKX5; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP44999.1}; GN ORFNames=JCGZ_01499 {ECO:0000313|EMBL:KDP44999.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP44999.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP44999.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP44999.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914240; KDP44999.1; -; Genomic_DNA. DR RefSeq; XP_012091625.1; XM_012236235.1. DR GeneID; 105649555; -. DR KEGG; jcu:105649555; -. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 367 466 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 367 466 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 466 AA; 54100 MW; 4BF975EBF3053DF8 CRC64; MARSLVFEAD STPQFFKIIS QDSIRDGKLG IPAKFVRKYG GILPSSTVLK VPSGDKWRVE LIKCDGEIWL KNGWQEFAKF YSLAYGSFLV FQYDKKSCHF NVIILDKSAT EIEYPYDVSH GDTVQPNGLE KEFQEQKIEV ESESEASVDS LDRFLQSQKR KMKSPLSCPQ PPKKMKQEKP TRKNKAKKRN GGLFREEHRS VRVIKRLTSE EKYDALRRAN TNFKSENPFF SMAMQPSYVY VGSILPIPSH FSKIYFKEEQ GKASLNTWSV EYTSTWCNGR KSIRLSNGWR EFEKENHLEV GDVCFFELIE PTEMTFKVTI FRHAEGSKQQ SVGEKSASRE KFIRNSSSSN LPVTIESTEE FSSIYPFFKA VISSSHLDRS NVHLPYNFVS DIHQSKVKAR LQVENKWWDV ILNIYRRKNR SRGLISAGWR RFSRENFLRV GDFCMFELID SKPEMVLMNV TIIRNS // ID A0A067LLN2_JATCU Unreviewed; 230 AA. AC A0A067LLN2; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP45675.1}; GN ORFNames=JCGZ_17282 {ECO:0000313|EMBL:KDP45675.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP45675.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP45675.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP45675.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914227; KDP45675.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 26139 MW; 6CD45EFF18667130 CRC64; MAIENGNSNT YEEARKQRVK ENKKRFEDLG ISNISKSLSK LSSPEKKSKQ RLPKPKSEGT EAFELRRSSR ARNTVTSYLD DLDIDLPSLR KRSRSNSSWK SYVARPLEEV KLASYEDRAL ALRAAEEFQS GLQSGNPSFV KSMVRSHVYS CFWLGLPTQF CKDHLPKKDL DMILEDENGS TCDAKYLGKR NGLSGGWRGF ALDHKLDDGD AVVFELVESD RFKGFNILNF // ID A0A067LMY1_JATCU Unreviewed; 479 AA. AC A0A067LMY1; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP46180.1}; GN ORFNames=JCGZ_10020 {ECO:0000313|EMBL:KDP46180.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP46180.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP46180.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP46180.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914219; KDP46180.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 239 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 375 469 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 239 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 375 469 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 479 AA; 54614 MW; 747C9A8F1A60EE38 CRC64; MAWRREVEIN NGNHRGLPHS PVDRPLLSFF KIILPSIIQE KKMHNSICTG YFLVFGYKGF SNFSILIFDK TACEIKYPDK GSVCGQNCLI PYENGVDKNN SAIPSPFTSY SLKSKLFVET PTRGDSSKRR AGARNSGIKK QCGGVGSMVN PNVNTKRKRI EKEEAVEITN IDTNESKREK FHKQRMSSSK VQLDNNKSPH KCEEDTEIIT SEKFECVKVS PKSEKAIRAA RMLQPKNPSF MVVLRSSSLM KNIVCVPIRF ARRYLSRGLE FIKIQDSDGR DWSVNLCWDS HRVNLGRGWN VLCREKKLKR GDVCLFELIK NDMLKISIFC ANQSVENYKE DLEIITSEMF GCAKPSPESQ RAIEAARMLK PKNPSFMVLL RPYNCRNSIL YVPSKFAKRY LSRGPKNIKL QVSDGKEWAV CLLQQGYGRS LLGKGWKIFC RENTLEGGDV CLFELINNYV LKVFIFHAVE ISNPKIMAS // ID A0A067LNX8_JATCU Unreviewed; 402 AA. AC A0A067LNX8; DT 03-SEP-2014, integrated into UniProtKB/TrEMBL. DT 03-SEP-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDP46179.1}; GN ORFNames=JCGZ_10019 {ECO:0000313|EMBL:KDP46179.1}; OS Jatropha curcas (Barbados nut). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Crotonoideae; Jatropheae; Jatropha. OX NCBI_TaxID=180498 {ECO:0000313|EMBL:KDP46179.1, ECO:0000313|Proteomes:UP000027138}; RN [1] {ECO:0000313|EMBL:KDP46179.1, ECO:0000313|Proteomes:UP000027138} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Young leaves {ECO:0000313|EMBL:KDP46179.1}; RX PubMed=24837971; RA Zhang L., Zhang C., Wu P., Chen Y., Li M., Jiang H., Wu G.; RT "Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha RT curcas L.) Seedlings Exposed to Salt Stress."; RL PLoS ONE 9:E97878-E97878(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK914219; KDP46179.1; -; Genomic_DNA. DR Proteomes; UP000027138; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000027138}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000027138}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 402 AA; 46533 MW; C391EBA85011042B CRC64; MSRLDGPEGP DSPAKGSCMF YKLMVASILK DKKLKIPEKF VKKYGDELSS IATLTVPNGR IWLVELEKKD GKLWFHNGWH EFVEYYSVRL GYFLVFKYGG DSNFNTYIFD LTVSEIRYPC NLPSSLQEKF QDNQNIAEKK HLTNDRLMEI LGSGSTSHSP GSNYLGKYGH CTWTPSGNYE VSREGLIQRK DAYDVVEKFH SYRDIGVQFN ESELTSTADK FGLSFMGEAD GRTRKRRQIT DPNKYEPKIK QKAYENSRRL KITSESLTRR WRPVTPEEKQ RTISTADMFK PNNPFFRVIL RPSYVYRGFL LHIPNDFAQK YLVVTRYIKL QVSKGKEWPV RCVCGHGKAK LCKGWTEFVW ENGLEEGDVC VFELVNTMDI LLKVTIFRVL EDVIPVNQLP MP // ID A0A072TI81_MEDTR Unreviewed; 417 AA. AC A0A072TI81; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=MTR_0041s0120 {ECO:0000313|EMBL:KEH17132.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH17132.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH17132.1, ECO:0000313|EnsemblPlants:KEH17132, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH17132.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH17132, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH17132.1, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH17132.1}, and RC cv. Jemalong A17 {ECO:0000313|Proteomes:UP000002051}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH17132} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH17132}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KL402766; KEH17132.1; -; Genomic_DNA. DR RefSeq; XP_013443107.1; XM_013587653.1. DR EnsemblPlants; KEH17132; KEH17132; MTR_0041s0120. DR GeneID; 25479916; -. DR Gramene; KEH17132; KEH17132; MTR_0041s0120. DR KEGG; mtr:MTR_0041s0120; -. DR Proteomes; UP000002051; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 92 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 92 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 417 AA; 46851 MW; FC1C5DFB2714CFDE CRC64; MVQMPEVNSQ VFYFPQGHAE HACEPVNFSA YSKIPSFIPC RVEDIRYMAN HETDEVYAKL RLVPMNINQV SFDNDGVAGI NVSETKDKHQ SFAKTLTQSD ANNGGGFSCP RYCAEMIFPR MDYSGNPPFQ GIYPKDVHGE KWHFRHVYRG TPKRHLLTTG WSPFVSDKKL ASGDSVVGIG ICPAPPYGGF TSFSEEEDNK LRRNGKGNGL LISDGMMGRG KVKVLEVIEA VRLGTNMQPF DVVYYPRSGT PEFFVKTSLI GITLQIRWCP GMRFKMPIET EDSSRISWFI GTVASVQAAD PSWPDSLWRL LQPSFQQPFN NISTMLMTLT NNSVLQKPNT SENVCSHSIS TSTQSLKKPD HAKPHQLVLF GQTIQIDAGN ETSEKKMTNH LSDLHLQGLP TRSSDERFEW NPKNQCE // ID A0A072TM91_MEDTR Unreviewed; 677 AA. AC A0A072TM91; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g027440 {ECO:0000313|EMBL:KEH18629.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH18629.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH18629.1, ECO:0000313|EnsemblPlants:KEH18629, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH18629.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH18629, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH18629.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH18629.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH18629} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH18629}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; KEH18629.1; -; Genomic_DNA. DR RefSeq; XP_013444604.1; XM_013589150.1. DR EnsemblPlants; KEH18629; KEH18629; MTR_8g027440. DR GeneID; 25500666; -. DR Gramene; KEH18629; KEH18629; MTR_8g027440. DR KEGG; mtr:MTR_8g027440; -. DR KO; K14486; -. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 558 639 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 677 AA; 75736 MW; 74742F0465E5154C CRC64; MAHLECNLRV PGGSSQQEKG VKNDDLYEEL WKLCAGPLVD VPNTGDRVFY FPQGHMEQLQ ASTDQELNQE IPHFNLPSKI LCRVVNIQLL AEQETDEVYA CVALLPESDQ TEPVDPDPNP SDSPKQKFHS FCKILTASDT STHGGFSVLR KHATECLPPL DMAPATPTQE LAAKDLHGFE WKFKHIYRGQ PRRHLLTTGW STFVASKRLV AGDAFVFLRG ENGQLRVGVR RIAKQHSPMP SSVISSQSMH LGVLATASHA VMTRTMFVVY YKPRTSQFIV GLNKYLEAVN NHKFSVGMRF KMRFEGEDSP ERRFSGTIVG VGDVSAGWSN SHWRSLKVQW DEAATIPRPE RVSSWEIEPF IASPTLNVAQ TSVKSKRSRP ADVSSCGFWY PGSSQAHEHT QLTGAAEFQG KESQIVSSRV LVEGIWPNSP HLNVTSNPYA NTNIASRPSD GLTCDRVEDP KKNENPLDCW LFGVNLNNKN KSCSVNSCLE KELGCPSLTI VTTSGPKESI ILTTNACETE KVQSPNYSLS NKGQQKKIIS DASPNEWQNK LATVPSMRTR TKVQMEGVAV GRALDLTMLS GYDELIDEVE KLFDIKGELR SQNKWRVTFT DNENDMMLVG DDPWPEFCNM VKKIFICSNE ELKKMKCKLP NSSLEIEETL LSLDSQNRDE NQQTHVT // ID A0A072TQ39_MEDTR Unreviewed; 381 AA. AC A0A072TQ39; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g446900 {ECO:0000313|EMBL:KEH19316.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH19316.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH19316.1, ECO:0000313|EnsemblPlants:KEH19316, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH19316.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH19316, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH19316.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH19316.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH19316} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH19316}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; KEH19316.1; -; Genomic_DNA. DR RefSeq; XP_013445290.1; XM_013589836.1. DR EnsemblPlants; KEH19316; KEH19316; MTR_8g446900. DR GeneID; 25502429; -. DR Gramene; KEH19316; KEH19316; MTR_8g446900. DR KEGG; mtr:MTR_8g446900; -. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 357 377 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 62 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43477 MW; 2B0F91AF43B1FD25 CRC64; MEIPNYHLPS KILCIVVGVQ LMVKVDTDEI FTLVTLFPLL EQQEYVLEDN HALHSPDEIY SFSKLLTSME TSTQGGLYIP KQHADRCFPQ LDMTLQPPMQ DLVVKDLQGI EWNFRHIYCD HERAHLLTNG WNTFVNSKNL RPGDSCIFVS GENGEIGIGI RRAMKQHSHI CTKLCQQSSQ NIQLGALAAV VHAVSIGSLF HLQYHPWIAP FEFMIPLKTY VESIEKDYSI GTRVHMLSEV GGCPRRYGTI VGNEDIDPIR WPGSEWRCIK VQWDSMLNIE RVCPWWIEPL GSPKIMLKGI PIFPLPNKTD VPNPSLLGLN NFANENITGS SSKPEYHKVD MDLEGQQYNT GNDKKSIFSI FAFFICLCFF TFVIFVFRPL L // ID A0A072TSX9_MEDTR Unreviewed; 832 AA. AC A0A072TSX9; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g079492 {ECO:0000313|EMBL:KEH20527.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH20527.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH20527.1, ECO:0000313|EnsemblPlants:KEH20527, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH20527.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH20527, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH20527.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH20527.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH20527} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH20527}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; KEH20527.1; -; Genomic_DNA. DR RefSeq; XP_013446500.1; XM_013591046.1. DR EnsemblPlants; KEH20527; KEH20527; MTR_8g079492. DR GeneID; 25501691; -. DR Gramene; KEH20527; KEH20527; MTR_8g079492. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR011989; ARM-like. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 699 783 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 446 477 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 832 AA; 93355 MW; 1A91312AEA0E4C8B CRC64; MHADTETDEV YAQMTLQPLN PEEQKEAYLP AELGTANKQP TNYFCKILTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIARDLH GNDWKFKHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRASRPQH MMPSSVLSSD SMHLGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD SVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPPGLPS FHGLKDDDFG MNSPLLWLRD ADRGLQTLNF QGMGVNPWMQ ARLDPSMMNM QPDMYQAMAA AALQDMRTLD PSKQHPASLL QFQQPQNFSN GNAALMQNQM LQQSQPHQAF PKNQESQHPS QSQAQTQQFQ QLLQHQHSFT NQNYHMQQQQ QQQQQQQQQQ QQQHQQQQQQ QSQQQQQVVD HQQMSNAVST MSQFVSAPPS QSTQPMQAIS SIGHQQNFSD SNGNPVSPLH NMLGSFSNDE TSHLLNFPRP NSWVPVQSST ARPSKRVAVD PLLSSGASHY VLPQVEQLGQ SQTTMSQNAI TLPPFPGREC AIEGNTDPQN HLLFGFNIEP SSHLVYNEMS NLKRVNSNCD SSTAPFQSST YLNTTGADSS LNPGLTHGVG ESGFMQTPEN GGQGNPQNKT FVKVYKSGSF GRSLDITKFS NYPELRSELA RMFGLEGELE DPVRSGWQLV FVDQENDVLL LGDGPWPEFV NSVWCIKILS PQEVQQMGTN GLELLNSAPT QRLSNGICDD YTGREDSRNL STGLTTVGSL DY // ID A0A072TTL5_MEDTR Unreviewed; 915 AA. AC A0A072TTL5; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g079492 {ECO:0000313|EMBL:KEH20526.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH20526.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH20526.1, ECO:0000313|EnsemblPlants:KEH20526, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH20526.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH20526, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH20526.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH20526.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH20526} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH20526}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; KEH20526.1; -; Genomic_DNA. DR RefSeq; XP_013446499.1; XM_013591045.1. DR EnsemblPlants; KEH20526; KEH20526; MTR_8g079492. DR GeneID; 25501691; -. DR Gramene; KEH20526; KEH20526; MTR_8g079492. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 782 866 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 529 560 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 915 AA; 102334 MW; 3AC957BE4F0CFBC4 CRC64; MKLSSAGFSP PPQEGEKRVL DSELWHACAG PLVCLPADGS RVVYFPQGHS EQVAVSTNRE VDTYIPNPSL PPQLICQLHN LTMHADTETD EVYAQMTLQP LNPEEQKEAY LPAELGTANK QPTNYFCKIL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIARD LHGNDWKFKH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRASRP QHMMPSSVLS SDSMHLGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSPFPL RLKRPWPPGL PSFHAGLKDD DFGMNSPLLW LRDADRGLQT LNFQGMGVNP WMQARLDPSM MNMQPDMYQA MAAAALQDMR TLDPSKQHPA SLLQFQQPQN FSNGNAALMQ NQMLQQSQPH QAFPKNQESQ HPSQSQAQTQ QFQQLLQHQH SFTNQNYHMQ QQQQQQQQQQ QQQQQQHQQQ QQQQSQQQQQ VVDHQQMSNA VSTMSQFVSA PPSQSTQPMQ AISSIGHQQN FSDSNGNPVS PLHNMLGSFS NDETSHLLNF PRPNSWVPVQ SSTARPSKRV AVDPLLSSGA SHYVLPQVEQ LGQSQTTMSQ NAITLPPFPG RECAIEGNTD PQNHLLFGFN IEPSSHLVYN EMSNLKRVNS NCDSSTAPFQ SSTYLNTTGA DSSLNPGLTH GVGESGFMQT PENGGQGNPQ NKTFVKVYKS GSFGRSLDIT KFSNYPELRS ELARMFGLEG ELEDPVRSGW QLVFVDQEND VLLLGDGPWP EFVNSVWCIK ILSPQEVQQM GTNGLELLNS APTQRLSNGI CDDYTGREDS RNLSTGLTTV GSLDY // ID A0A072TYC0_MEDTR Unreviewed; 517 AA. AC A0A072TYC0; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH18550.1}; GN OrderedLocusNames=MTR_8g023990 {ECO:0000313|EMBL:KEH18550.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH18550.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH18550.1, ECO:0000313|EnsemblPlants:KEH18550, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH18550.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH18550, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH18550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH18550.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH18550} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH18550}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; KEH18550.1; -; Genomic_DNA. DR RefSeq; XP_013444525.1; XM_013589071.1. DR EnsemblPlants; KEH18550; KEH18550; MTR_8g023990. DR GeneID; 25500594; -. DR Gramene; KEH18550; KEH18550; MTR_8g023990. DR KEGG; mtr:MTR_8g023990; -. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH18550.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 172 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 1 32 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 517 AA; 59360 MW; 635886343D47A3A4 CRC64; MELMQEVKDY SQEELEEDEE EIMTKTTREE EESSSKQQLQ HCTFSSPPSN FSLSSSSPST THHHNHNHNH NHNHDVTNVS HQQNQWLGMN HHHHHSPESH NSAASKGGLG LLHQHQHQDA TTSNFTNLKQ IDFMELSLGN NNNNKNKDVV INDPVPQEQE QQPSTHEKEH MFDKAVTPSD VGKLNRLVIP KQHAEKYFPL DSTSNEKGLL LNFEDRNGKL WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGELFRHRLF IDWRRRSNHN HHTIDPSSAT LFTPFFLPNQ QQYSIRWGGA NSRFYSLPYP TPQRLQHQQQ NHHDPLHNQM NFNHNMFPFH QYGGGNVNHQ YNFHHHDPSS VFYMRSLAPS SMSMPQGSLS TRSQQQEGGG GSNVSNMIID SVPVSHYHHH HGNLTSNATT STTTNGAAKR LRLFGVNMEC GGSSTSDDNL ASPSSIVPSL QHLKVPHHEE TLSSSTSTRF EEDKRREEAS MIFGLDTSLQ YHNYQQQ // ID A0A072U0Z8_MEDTR Unreviewed; 770 AA. AC A0A072U0Z8; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=B3 domain transcription factor {ECO:0000313|EMBL:KEH22833.1}; GN OrderedLocusNames=MTR_7g059330 {ECO:0000313|EMBL:KEH22833.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH22833.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH22833.1, ECO:0000313|EnsemblPlants:KEH22833, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH22833.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH22833, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH22833.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH22833.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH22833} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH22833}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; KEH22833.1; -; Genomic_DNA. DR RefSeq; XP_013448806.1; XM_013593352.1. DR EnsemblPlants; KEH22833; KEH22833; MTR_7g059330. DR GeneID; 25498436; -. DR Gramene; KEH22833; KEH22833; MTR_7g059330. DR KEGG; mtr:MTR_7g059330; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 624 726 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 624 726 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 770 AA; 85207 MW; 019A4AC173AAE1F3 CRC64; MECGLDLHAK LVNETEQVGF GNLAEENWLN NTTNDQDGDL LGMNMNDDAS MFYADFPPLP DFPCMSSSSS SSSSSTPLKT IACTSTTTTT TSSSSSASSS SAASWAVLKS DVEVDHQGYQ KHGHPLDYHH GHPPTTLSST ASMEISQQQQ QDLGVSNNDV VVGGGDCMDD VNIMDTFGYM ELLEANEFFD PASIFQNEDE NPLVDFTQEQ QVQVQDGYQQ HQQVPMIVHD DRENKPQQVN IEENNDDVFV CDGVNGEESI QGDELGACDG VSDEMSMVFL EWLKSNKDSV SANDLRNVKL KKSTIESAAR RLGGGKEGMK QLLKLILEWV QTSHLHNKRL KENANTNTII PSNIVPQQHH FQDPCQNQNT ANTFAPESNA CFNQTSWLDQ TPLIVPPQQF SQPMVGVGVG FVADPYTNGS VSNNINPYQP AVTNEYHMLE SNHSWGASQF NVAPNYNQSF VENNNNVLQP HGMNFGGYGN QYNSYQLFPG PGDRLMRLGP SATKEARKKR MARQRRFMSH HRHHNINHHQ NIQGSDPLAR LGSGDSCTNV AAGGSHANPA NWMYWQTMTG GTAASLAPVV PAEPTQPPVD RDRPTMQTQS SHQGRSASDR RQGWKPEKNL RFLLQKVLKQ SDVGSLGRIV LPKKEAETHL PELEARDGIS ITMEDIGTSR VWNMRYRYWP NNKSRMYLLE NTGDFVKANG LQEGDFIVIY SDVKCGKFMI RGVKVRQQGT KPEAKKAGKS QKNQHGNNAA NLAGTAVDNN GTPSSPKRKK // ID A0A072U1C1_MEDTR Unreviewed; 680 AA. AC A0A072U1C1; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_7g062540 {ECO:0000313|EMBL:KEH22928.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH22928.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH22928.1, ECO:0000313|EnsemblPlants:KEH22928, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH22928.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH22928, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH22928.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH22928.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH22928} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH22928}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; KEH22928.1; -; Genomic_DNA. DR RefSeq; XP_013448901.1; XM_013593447.1. DR EnsemblPlants; KEH22928; KEH22928; MTR_7g062540. DR GeneID; 25498520; -. DR Gramene; KEH22928; KEH22928; MTR_7g062540. DR KEGG; mtr:MTR_7g062540; -. DR KO; K14486; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 570 651 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 680 AA; 76165 MW; CD0262C85E35B573 CRC64; MMMNNGEEDE LYEQLWKACA GPHVEVPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK LPNKILCRVV NVHLLAEQET DEVYAQITLV PESNQTEPTS LDPCPAEPPR PRTHSFSKVL TNSDTSTHGG FSVLRKHATE CLPSLDMSQS TPTQELVAKD LHNYEWHFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGHNGEL RVGVRHLASP QSCMPSSVIS GQSMHLGVLA TASHAVATQT LFVVYYKPRM SQFIISVNKY MEAINQKFSV GMRFKMSFDG DDSPETDKRF SGTIIGQEDI SSHWLNSKWR SLKVQWDDPA SIPRPDRISP WEIEPLMASV PTSIQPAVAK YKRPRLPSEV PDFGDTTVGD STYWEAGLAQ SDITQVNNVL SENIRSDGMH FWHHKQTDNS SSNGISRNPT DGSWLSSPHS SGPSHLCQDA IDDSKSVAVS AWPISKTHSE ILNNNDHMID QVVKDNKKEA ATSCRLFGID LNDPRTNTHK VSEYSANAFG VTSEGCVATP ISRTDADQNK FDISKASKER KQEQLPISPN ETQSKQTNSR SCTKVQMQGV AVGRAVDLTA LDGYDQLIDE LEKLFDIKGQ IQPRNKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS SQDVHKMSSG TKSPISSLEE TVISSDTAEI // ID A0A072U3R9_MEDTR Unreviewed; 405 AA. AC A0A072U3R9; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_7g101275 {ECO:0000313|EMBL:KEH24016.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH24016.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH24016.1, ECO:0000313|EnsemblPlants:KEH24016, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24016.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24016, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH24016.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24016.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH24016} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24016}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; KEH24016.1; -; Genomic_DNA. DR RefSeq; XP_013449988.1; XM_013594534.1. DR EnsemblPlants; KEH24016; KEH24016; MTR_7g101275. DR GeneID; 25499314; -. DR Gramene; KEH24016; KEH24016; MTR_7g101275. DR KEGG; mtr:MTR_7g101275; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 92 194 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 92 194 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 405 AA; 46076 MW; BDD28DD819C47749 CRC64; MVQMPEVNSQ VFYFPQGHAE HACEPVNFSA YSKIPSFIPC RVEDIRYMAN HETDEVYAKL RLVPMNINQV SFDNDGVAGI NVSETKDKHQ SFAKTLTQSD ANNGGGFSCP RYCAEMIFPR MDYSGNPPFQ GIYPKDVHGE KWHFRHVYRG TPKRHLLTTG WSPFVSDKKL ASGDSVVFLR SENGELRVGI WREKRRNNVG VVRVEIWGKV KVLEVIEAVR LGTNMQPFDV VYYPRSGTPE FFVKTSLIGI TLQIRWCPGM RFKMPIETED SSRISWFIGT VASVQAADPS WPDSLWRLLQ PSFQQPFNNI STMLMTLTNN SVLQKPNTSE NVCSHSISTS TQSLKKPDHA KPHQLVLFGQ TIQIDAGNET SEKKMTNHLS DLHLQGLPTR SSDERFEWNP KNQCE // ID A0A072U3V8_MEDTR Unreviewed; 914 AA. AC A0A072U3V8; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g079492 {ECO:0000313|EMBL:KEH20525.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH20525.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH20525.1, ECO:0000313|EnsemblPlants:KEH20525, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH20525.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH20525, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH20525.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH20525.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH20525} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH20525}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; KEH20525.1; -; Genomic_DNA. DR RefSeq; XP_013446498.1; XM_013591044.1. DR EnsemblPlants; KEH20525; KEH20525; MTR_8g079492. DR GeneID; 25501691; -. DR Gramene; KEH20525; KEH20525; MTR_8g079492. DR KEGG; mtr:MTR_8g079492; -. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 781 865 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 528 559 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 914 AA; 102263 MW; D0F18AFCF5C0F604 CRC64; MKLSSAGFSP PPQEGEKRVL DSELWHACAG PLVCLPADGS RVVYFPQGHS EQVAVSTNRE VDTYIPNPSL PPQLICQLHN LTMHADTETD EVYAQMTLQP LNPEEQKEAY LPAELGTANK QPTNYFCKIL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIARD LHGNDWKFKH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRASRP QHMMPSSVLS SDSMHLGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSPFPL RLKRPWPPGL PSFHGLKDDD FGMNSPLLWL RDADRGLQTL NFQGMGVNPW MQARLDPSMM NMQPDMYQAM AAAALQDMRT LDPSKQHPAS LLQFQQPQNF SNGNAALMQN QMLQQSQPHQ AFPKNQESQH PSQSQAQTQQ FQQLLQHQHS FTNQNYHMQQ QQQQQQQQQQ QQQQQHQQQQ QQQSQQQQQV VDHQQMSNAV STMSQFVSAP PSQSTQPMQA ISSIGHQQNF SDSNGNPVSP LHNMLGSFSN DETSHLLNFP RPNSWVPVQS STARPSKRVA VDPLLSSGAS HYVLPQVEQL GQSQTTMSQN AITLPPFPGR ECAIEGNTDP QNHLLFGFNI EPSSHLVYNE MSNLKRVNSN CDSSTAPFQS STYLNTTGAD SSLNPGLTHG VGESGFMQTP ENGGQGNPQN KTFVKVYKSG SFGRSLDITK FSNYPELRSE LARMFGLEGE LEDPVRSGWQ LVFVDQENDV LLLGDGPWPE FVNSVWCIKI LSPQEVQQMG TNGLELLNSA PTQRLSNGIC DDYTGREDSR NLSTGLTTVG SLDY // ID A0A072U475_MEDTR Unreviewed; 302 AA. AC A0A072U475; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH24166.1}; GN OrderedLocusNames=MTR_7g105370 {ECO:0000313|EMBL:KEH24166.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH24166.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH24166.1, ECO:0000313|EnsemblPlants:KEH24166, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24166.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24166, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH24166.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24166.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH24166} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24166}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; KEH24166.1; -; Genomic_DNA. DR RefSeq; XP_013450138.1; XM_013594684.1. DR EnsemblPlants; KEH24166; KEH24166; MTR_7g105370. DR GeneID; 25499421; -. DR Gramene; KEH24166; KEH24166; MTR_7g105370. DR KEGG; mtr:MTR_7g105370; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH24166.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 163 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 163 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 34899 MW; 187F6B800D13A482 CRC64; MSVNHTIQET TSLWWNQQQQ RTQQDAEEAE IEDDVVLESI MKLKTTEASS EEEEEEKEAM FEKPLTPSDV GKLNRLVIPK QHAERYFPLD SEEIKGLLLS FEDESGKCWR FRYSYWNSSQ SYVLTKGWSR YVKDKRLDAG DVVLFQRHRI HPQRLFISWR RRHGSNSTPP AHVSRSISSS STHGNVPMGW SRELYPAHPY PTHHHPLSYH AGEGSQSQNT ATPCGNSSST SRVLRLFGVN MECQPDNNIN INNINDSQTL SQDCSYNNMS STQGTAIPQF YHHLHRQPPS NPHHHMLRQQ PY // ID A0A072U4K3_MEDTR Unreviewed; 175 AA. AC A0A072U4K3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH24674.1}; GN OrderedLocusNames=MTR_7g117590 {ECO:0000313|EMBL:KEH24674.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH24674.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH24674.1, ECO:0000313|EnsemblPlants:KEH24674, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24674.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24674, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH24674.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24674.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH24674} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24674}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; KEH24674.1; -; Genomic_DNA. DR RefSeq; XP_013450646.1; XM_013595192.1. DR EnsemblPlants; KEH24674; KEH24674; MTR_7g117590. DR GeneID; 25499760; -. DR Gramene; KEH24674; KEH24674; MTR_7g117590. DR KEGG; mtr:MTR_7g117590; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH24674.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 94 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 109 174 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 174 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 19959 MW; 892DDD124CB5E7DC CRC64; MSSSAPSSSN RCCCNCSDVI DPELEELMPN FHPLPVDENP NEEEVDGPVF AQFQNFQNGD HTWMHNISSD AAVGSFLVDF YFIFAGLFAH GIFIRKLQAV QSMYVNQSKI RVVDDETGEE YECEVRDKGN WTEKYVRSGW VDFVREKELK HGDLLFFTID NPPHKLFVLV IRGGS // ID A0A072U667_MEDTR Unreviewed; 457 AA. AC A0A072U667; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH24648.1}; GN OrderedLocusNames=MTR_7g117455 {ECO:0000313|EMBL:KEH24648.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH24648.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH24648.1, ECO:0000313|EnsemblPlants:KEH24648, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24648.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24648, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH24648.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24648.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH24648} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24648}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; KEH24648.1; -; Genomic_DNA. DR RefSeq; XP_013450620.1; XM_013595166.1. DR EnsemblPlants; KEH24648; KEH24648; MTR_7g117455. DR GeneID; 25499742; -. DR Gramene; KEH24648; KEH24648; MTR_7g117455. DR KEGG; mtr:MTR_7g117455; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH24648.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 40 63 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 457 AA; 51626 MW; EDC159D0DA0E95A4 CRC64; MEQVKGYCSD SRDEEEEEEG ADDIIAITGG GGGEEISSSS SRLQLQTSQQ EEEEEEEEEE EDVGVGKLNE EEVDLMELRL GGGGISKSKG SDEGLGIGCC SNSKDEEEAV VVEKEHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKMWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFHRGRAEL HRHRLYIDWR PRAHSQYSHH HHQYLIPQYP PPPPSLPFYL PPNHHYHYSS YAATARSLYT SPQYSHLPNP NYAAPSPTIS HPQYYNTNFY TTTTTTTTLH QQQQQQQYHH PAPAADHLLV DNNNNMNPLY YLTSSPITPP STTTATGDQH LQGSVVQGHQ QDQRNVNVPM NMIIDSVPVA HHHLGGNVNT GGKRLRLFGV NMECDSSSSS EPPQVTTTSG DHDHHHRGGT SLHFDLDPSN SQYRRHH // ID A0A072U688_MEDTR Unreviewed; 148 AA. AC A0A072U688; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH24673.1}; GN OrderedLocusNames=MTR_7g117585 {ECO:0000313|EMBL:KEH24673.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH24673.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH24673.1, ECO:0000313|EnsemblPlants:KEH24673, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24673.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24673, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH24673.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH24673.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH24673} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24673}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; KEH24673.1; -; Genomic_DNA. DR RefSeq; XP_013450645.1; XM_013595191.1. DR EnsemblPlants; KEH24673; KEH24673; MTR_7g117585. DR GeneID; 25499759; -. DR Gramene; KEH24673; KEH24673; MTR_7g117585. DR KEGG; mtr:MTR_7g117585; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH24673.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 17632 MW; DD75813CB2474D9F CRC64; MLKNAEEINI TTHFGEDDVG VYMTPGVRVA KEEEDEEEEP ENVDFYHFEK TVTEALAYVT KLEVLHFPNS VSRKMLKKRY MRMMMEDVKT CKAYECWVRT ARRKNYEKCL GGGWFDFVVD RGLKVNDKLL FELEDPPNKM YVRHIRHQ // ID A0A072U9K2_MEDTR Unreviewed; 473 AA. AC A0A072U9K2; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH26464.1}; GN OrderedLocusNames=MTR_6g061070 {ECO:0000313|EMBL:KEH26464.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH26464.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH26464.1, ECO:0000313|EnsemblPlants:KEH26464, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH26464.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH26464, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH26464.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH26464.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH26464} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH26464}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001222; KEH26464.1; -; Genomic_DNA. DR RefSeq; XP_013452436.1; XM_013596982.1. DR EnsemblPlants; KEH26464; KEH26464; MTR_6g061070. DR GeneID; 25496581; -. DR Gramene; KEH26464; KEH26464; MTR_6g061070. DR KEGG; mtr:MTR_6g061070; -. DR Proteomes; UP000002051; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH26464.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 225 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 418 473 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 225 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 418 473 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 473 AA; 54380 MW; A9244F4D5CD09D8F CRC64; MVSIVHNGRG SEAKGMHFYL TIQFLQMHDQ DLMIPRNFVE RYWKDVSNPI SLKFPNKSQC KMNWEQRGDD IWLLNWKRFA RSLRCGDLLV FQYKGGSDFH VIIFDVSKLE IDYSSIGCND NEENNKESDD DYDVEIPSDS ENTKISINKK RINLNDIATT AATPQGTNIH KRKTNINATQ QNVSGNFAEA NRNRGGREKK AKECTKTKDG NERSCTNSHP NENPSFTLKL SRYYVEGDRL RIPIWFSKEN MNELLQGKAT IRSVGEDRAR YVTLNFDKSK SSFVMQVGWK SFTKEHDLKI GDACKFEMTQ REPLSFTITI IPAPKEPSLE QFQENQRVQG KSVTTRVEDM EYVGNFGEGS SKSCTKTHGL RNSVSPDSHE KFKVFVTSLD KLIVLPSLLK RHNIFSGDSV ELKVGEGTWF VEVSYNQYLD YGWFTKGWPE FVRECNVKIG DTCLFELIDV QNHVFEVSII LDV // ID A0A072UAG2_MEDTR Unreviewed; 342 AA. AC A0A072UAG2; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH26078.1}; GN OrderedLocusNames=MTR_6g043890 {ECO:0000313|EMBL:KEH26078.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH26078.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH26078.1, ECO:0000313|EnsemblPlants:KEH26078, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH26078.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH26078, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH26078.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH26078.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH26078} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH26078}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001222; KEH26078.1; -; Genomic_DNA. DR RefSeq; XP_013452050.1; XM_013596596.1. DR EnsemblPlants; KEH26078; KEH26078; MTR_6g043890. DR GeneID; 25496315; -. DR Gramene; KEH26078; KEH26078; MTR_6g043890. DR KEGG; mtr:MTR_6g043890; -. DR Proteomes; UP000002051; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH26078.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 39861 MW; F690FFC448A0C43B CRC64; MSSQELEHQN NGVHFFKIIL ASILQEGKLR VPINFARRHW HGITNPVTLR LPTMAQMNVT WEKTSDYDVW FCNGWKEFAN YLSLRDSQLL VFRYRKKSLF DVIVFGKCGL EIKYPLRETC DGSLKVTEDP SSSPGKRRKS PSPCVKVCKK MKINPEEQKE SKHEKKIFQS QAKFHNFKDM NNGNSRDDIK EKSKVLYEKV NEKFSHDKDF FACMIKKTHI ERDLLVIPTE FVKTHMHMME EGNAILFVDQ DRTWNVDLDL TLNKQFALTS GWSEFCAHNN LKFGDVCAFL LHKCKTTGWL EFLKDCYLKE GDTCLLKMVE KACLCLILQF QEEAAKLDCV SC // ID A0A072UB72_MEDTR Unreviewed; 317 AA. AC A0A072UB72; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH26852.1}; GN OrderedLocusNames=MTR_6g477950 {ECO:0000313|EMBL:KEH26852.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH26852.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH26852.1, ECO:0000313|EnsemblPlants:KEH26852, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH26852.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH26852, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH26852.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH26852.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH26852} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH26852}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001222; KEH26852.1; -; Genomic_DNA. DR RefSeq; XP_013452824.1; XM_013597370.1. DR EnsemblPlants; KEH26852; KEH26852; MTR_6g477950. DR GeneID; 25497349; -. DR Gramene; KEH26852; KEH26852; MTR_6g477950. DR KEGG; mtr:MTR_6g477950; -. DR Proteomes; UP000002051; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR003871; DUF223. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF02362; B3; 1. DR Pfam; PF02721; DUF223; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH26852.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 317 AA; 36286 MW; 6CE2D55E42DE4578 CRC64; MNLTLKCGAG AAFGHGWNWK IEKLPWDFGQ YLQHNICQTL MLCGDNGDHQ LLDTVLEVTT RCDIHFPNRV SREVLKQPQK WMKLVDMNTN KEYWCRLNTG ERNKDEKALG RGWSKFVKDR RLKEGDKLIF ELDRPPTILF VQVILNQSNI TLLPLQPITT SISVLSSIAP YSMAGKGSSM ERPVQLISDV NDKKDLWKLA VKVKNKWTVV KDGKEHLELV IVDDKGNDIQ VIIPTGYKAV YDKILEENTT YTLSNFNVLN NNDLAFKTSD HKYKLKCTSG TTLGDKNMHT ISCDNIKFKP FAEILTGKWR ADLLVRE // ID A0A072UF27_MEDTR Unreviewed; 399 AA. AC A0A072UF27; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g460920 {ECO:0000313|EMBL:KEH28051.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH28051.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH28051.1, ECO:0000313|EnsemblPlants:KEH28051, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH28051.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH28051, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH28051.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH28051.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH28051} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH28051}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; KEH28051.1; -; Genomic_DNA. DR RefSeq; XP_013454020.1; XM_013598566.1. DR EnsemblPlants; KEH28051; KEH28051; MTR_5g460920. DR GeneID; 25495034; -. DR Gramene; KEH28051; KEH28051; MTR_5g460920. DR KEGG; mtr:MTR_5g460920; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 44454 MW; C4556FBE3EEBA15D CRC64; MSLPLPPRVD PKIWQICVGP DVKIPKIHSK VYYFPRGHLE HACSSPTAAT RTILDRYRSS IPCIVSSVDL FVDPHTDEVF AKLLLTPVTD QEPPPPVVPG QEDDDGDNLV SYVKTLTQSD CTRVLCVPIE CSNLIFPKLD LDKSQSITVT DLKNQEWWYT YTYSNSSRLH TGWLNFVREK KLVANDSVVF IKNSAGKISV GIRRNTKFTT DEAVEGSENL TDEIKVLDAA ELAEKNTAFD VVYYPTASGW RDFVVDAKTV DDAMKIGWKS GMRVKLPLKK YESSNSKMTI SQLKGTISFV FNHSSNVPNW RILEVNWDGL DIPQIPNLVN PWQVEVYNIH APSTSSSTVN NPRLAESSSP QQIPYSMPGT SGPMSQAPSE VSSLAYLCNI GLQSQLGTR // ID A0A072UHG0_MEDTR Unreviewed; 649 AA. AC A0A072UHG0; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:KEH29194.1}; GN OrderedLocusNames=MTR_4g028130 {ECO:0000313|EMBL:KEH29194.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH29194.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH29194.1, ECO:0000313|EnsemblPlants:KEH29194, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH29194.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH29194, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH29194.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH29194.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH29194} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH29194}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH29194.1; -; Genomic_DNA. DR RefSeq; XP_013455147.1; XM_013599693.1. DR EnsemblPlants; KEH29194; KEH29194; MTR_4g028130. DR GeneID; 11424037; -. DR Gramene; KEH29194; KEH29194; MTR_4g028130. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 315 416 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 579 629 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 315 416 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 649 AA; 72338 MW; 0E53677A5FC90EA8 CRC64; MESKCCMNVV CGTSTSIRWR KGWILRSGEF ADLCDKCGSA YEQSAFCDMF HAKESGWREC TSCGKRLHCG CVASKSQLEI LDTGGVSCIT CASTSGLQPI ASNENPNESG TAKVNNVSAQ QCITLANQLN VRGMQVGNYA ENDGMRCWLK PHNVDFDGLS REIKPEVLPS VGEFGSTLMS QFHRESNGSS RTGKAENDMQ DIYESLAQTN LSMTLAAPLP NPFHNVLVDE REQSKMSPPL LLASRSRHLL PKPPRPALSP GLEGNTGMVS QIRIARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST IVPLFEKMLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL PLRIQDVKGK EWMFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLIM GFRKATNSAS QETFPSNMPN GSHSSETSYS GVYENIPILS GYSGLLQSQK GCSETHLNAL SKKWNSVGAD MDWHNVEMPE SRKRDVLSLP PVLVPEKKRT RNIGSKSKRL LIDSEDALEL KLTWEEAQDL LRPPPEVKPS VVMIEDHLFE EYEEPPVFGK KSIFVVRSTG ISEQWTQCDS CQKWRKLPVD VLIPPKWTCM ENFWDQSRCS CAAPNELNPM ELDNLLRMNN GISLFLALN // ID A0A072UJA5_MEDTR Unreviewed; 864 AA. AC A0A072UJA5; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:KEH29193.1}; GN OrderedLocusNames=MTR_4g028130 {ECO:0000313|EMBL:KEH29193.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH29193.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH29193.1, ECO:0000313|EnsemblPlants:KEH29193, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH29193.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH29193, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH29193.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH29193.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH29193} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH29193}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH29193.1; -; Genomic_DNA. DR RefSeq; XP_013455146.1; XM_013599692.1. DR EnsemblPlants; KEH29193; KEH29193; MTR_4g028130. DR GeneID; 11424037; -. DR Gramene; KEH29193; KEH29193; MTR_4g028130. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 315 416 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 543 593 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 315 416 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 864 AA; 96268 MW; 3916C9DC903BDA11 CRC64; MESKCCMNVV CGTSTSIRWR KGWILRSGEF ADLCDKCGSA YEQSAFCDMF HAKESGWREC TSCGKRLHCG CVASKSQLEI LDTGGVSCIT CASTSGLQPI ASNENPNESG TAKVNNVSAQ QCITLANQLN VRGMQVGNYA ENDGMRCWLK PHNVDFDGLS REIKPEVLPS VGEFGSTLMS QFHRESNGSS RTGKAENDMQ DIYESLAQTN LSMTLAAPLP NPFHNVLVDE REQSKMSPPL LLASRSRHLL PKPPRPALSP GLEGNTGMVS QIRIARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST IVPLFEKMLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL PLRIQDVKGK EWMFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLIM GFRKATNSAS QSQKGCSETH LNALSKKWNS VGADMDWHNV EMPESRKRDV LSLPPVLVPE KKRTRNIGSK SKRLLIDSED ALELKLTWEE AQDLLRPPPE VKPSVVMIED HLFEEYEEPP VFGKKSIFVV RSTGISEQWT QCDSCQKWRK LPVDVLIPPK WTCMENFWDQ SRCSCAAPNE LNPMELDNLL RMNNEFKKQR QAAASQRPAL DRESSGLDAL ANAAVLGDDA SDSGRTPVLT TTRHPRHRPG CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQKNQQSWRT KDESEVDSTS RHLTPVDGSE NEARVPNELD SRNEDQVADA AKGQLDLNCQ PDREDMQAGP NTLSMMTLLE EANLPLETYL KQNGLSSLIS EQQTNSASNV QAHTTNESEG RQNEDCCTAS AVHEQEDSPE ENSGQDRDQN NSLS // ID A0A072UJV6_MEDTR Unreviewed; 672 AA. AC A0A072UJV6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g058930 {ECO:0000313|EMBL:KEH30034.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH30034.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH30034.1, ECO:0000313|EnsemblPlants:KEH30034, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30034.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30034, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH30034.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30034.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH30034} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30034}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH30034.1; -; Genomic_DNA. DR RefSeq; XP_013456003.1; XM_013600549.1. DR EnsemblPlants; KEH30034; KEH30034; MTR_4g058930. DR GeneID; 25492440; -. DR Gramene; KEH30034; KEH30034; MTR_4g058930. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 672 AA; 74555 MW; 353C69C36752444D CRC64; MKESEKGYLD PQLWHACAGG MVQIPQVNSK VFYFPQGHAE HANTNIDLRV SVSPLILCKV VGVKFMADPE TDEVFAVMKL LPLRNSELGY DEGGGGGDGL ENSEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY AAEPPVQTVV AKDVHGELWK FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSVVFLRAEN GELCVGIRRA KKGIGGGFDG SSCGWTSGSG SNNVNCGIGP FGAFSFFLKE ENKTLRNGCF DGNLSGRVRV RAEDVMEAVK LAANNQPFEV VYYPRASTPE FCVKASAVKA AMRIQWCSGM RFKMPFETED SSRISWFMGT IASVQVVDPI RWPNSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNVPVI HFSPFTPPRK KLRFPPNLDF PLDVQFLSPT FSGNQLGPNS PFFGLSDNAP ACIQGARHAQ FGGISLSDLN LNNNKLQLGL FPTNIQHLDV HSRISNSNNM MNNNDKTKES LSCLLSIGKK YDKSLEKSQS DDNVVKKHQF CLFGQPILTE QQISRNCSEK NSVDDSKDKE KWFLDAFSAG KGSNAAEFSW QLGLDIGHCK VFLESEDVGR TLDLSLLGSY EELYNKLANM FDLEKSEMLN HVFYRDATGA VKLIGEEPFS EFMKTAKRLT ILTDSGSKNV RG // ID A0A072UKW5_MEDTR Unreviewed; 787 AA. AC A0A072UKW5; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g060460 {ECO:0000313|EMBL:KEH30061.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH30061.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH30061.1, ECO:0000313|EnsemblPlants:KEH30061, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30061.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30061, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH30061.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30061.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH30061} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30061}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH30061.1; -; Genomic_DNA. DR RefSeq; XP_013456030.1; XM_013600576.1. DR EnsemblPlants; KEH30061; KEH30061; MTR_4g060460. DR GeneID; 11406453; -. DR Gramene; KEH30061; KEH30061; MTR_4g060460. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 658 740 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 787 AA; 87585 MW; D2C55BEE949F9895 CRC64; MEIDLNNEVI EVEKNALCHK ECEKGFCFCV SCLSPSTCSS SSSTSPLVSS SYLELWHACA GPLTSLPKKG NVVVYFPQGH LEQFASFSPF KQLEIPNYDL QPQIFCRVVN VQLLANKEND EVYTQVTLLP QAELAGMHME GKEVEELEGD EEGDGGSPTK STPHMFCKTL TVSDTSTHGG FSVPRRAAED CFPPLDYKLQ RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVN QKNLVSGDAV LFLRGQNGEL RLGIRRAVRP RNGLPESIVG NQNCYPNFLS SVANAISTKS MFHVFYSPRA SHAEFVVPYQ KYVKSIKNPM TIGTRFKMRI EMDESPERRC SSGMLIGIND LDPYRWPKSK WRCLMVRWDD DTETNHQDRV SPWEIDPSSP QPPLSIQSSP RLKKPRTGLL VASPNHLITG ISGMMGFEES VRSPKVLQGQ ENTGFMSLYY GCDKVTNQPG FELSTSSHHQ NLASTGIGKV VTSSELMSVH PFSYAGFMES NNFPRVLQGQ EICKLKSLSG KVDFNIGAWG TKPSFQSACF PYGDIDKSNQ ASMFSSKHTS FMSDNVPFNT PSIVAGDIRK EVGRSGSNLL PNEHKLQDNV SASASLVDTN RNAPNDNNVK GKANSCKLFG FPLSGEPSSQ NLQNTAKRSC TKVHKQGSLV GRAIDLSRLS GYNDLLSELE KLFGMEGLLR DSDKGWRILY TDSENDIMVV GDDPWHEFCD VVSKIHIYTK EEVEKMTFGM MTNDDTHSCL DQAPVIIEPS KSSSVGQPDY SPTVVRV // ID A0A072ULT3_MEDTR Unreviewed; 698 AA. AC A0A072ULT3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g058930 {ECO:0000313|EMBL:KEH30033.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH30033.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH30033.1, ECO:0000313|EnsemblPlants:KEH30033, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30033.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30033, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH30033.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30033.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH30033} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30033}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH30033.1; -; Genomic_DNA. DR RefSeq; XP_013456002.1; XM_013600548.1. DR EnsemblPlants; KEH30033; KEH30033; MTR_4g058930. DR GeneID; 25492440; -. DR Gramene; KEH30033; KEH30033; MTR_4g058930. DR KEGG; mtr:MTR_4g058930; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 77246 MW; 762DA50400A382C4 CRC64; MKESEKGYLD PQLWHACAGG MVQIPQVNSK VFYFPQGHAE HANTNIDLRV SVSPLILCKV VGVKFMADPE TDEVFAVMKL LPLRNSELGY DEGGGGGDGL ENSEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY AAEPPVQTVV AKDVHGELWK FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSVVFLRAEN GELCVGIRRA KKGIGGGFDG SSCGWTSGSG SNNVNCGIGP FGAFSFFLKE ENKTLRNGCF DGNLSGRVRV RAEDVMEAVK LAANNQPFEV VYYPRASTPE FCVKASAVKA AMRIQWCSGM RFKMPFETED SSRISWFMGT IASVQVVDPI RWPNSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNVPVI HFSPFTPPRK KLRFPPNLDF PLDVQFLSPT FSGNQLGPNS PFFGLSDNAP ACIQGARHAQ FGGISLSDLN LNNNKLQLGL FPTNIQHLDV HSRISNSNNM MNNNDKTKES LSCLLSIGKK YDKSLEKSQS DDNVVKKHQF CLFGQPILTE QQISRNCSEK NSVDDSKDKE KWFLDAFSAG KGSNAAEFSW QLGLDIGHCK VFLESEDVGR TLDLSLLGSY EELYNKLANM FDLEKSEMLN HVFYRDATGA VKLIGEEPFS EFMKTAKRLT ILTDSGSKNV RGAWITGTHK GEHGLDASNK TGPLSIFA // ID A0A072UMM3_MEDTR Unreviewed; 275 AA. AC A0A072UMM3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH31034.1}; GN OrderedLocusNames=MTR_4g088605 {ECO:0000313|EMBL:KEH31034.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH31034.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH31034.1, ECO:0000313|EnsemblPlants:KEH31034, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH31034.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH31034, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH31034.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH31034.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH31034} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH31034}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH31034.1; -; Genomic_DNA. DR RefSeq; XP_013457003.1; XM_013601549.1. DR EnsemblPlants; KEH31034; KEH31034; MTR_4g088605. DR GeneID; 25493129; -. DR Gramene; KEH31034; KEH31034; MTR_4g088605. DR KEGG; mtr:MTR_4g088605; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608, KW ECO:0000313|EMBL:KEH31034.1}; Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 204 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 275 AA; 31922 MW; 4E53A2BF64E83553 CRC64; MHTIPSMNQP HEGYSSSLMG QSHVPFIIQT TPQLVVEREE DKKFFEAKRC KIAREQRKQI LKRIRSKSAS KFTEETSKRS PIYREIQERT PHVFYSPDGK RFEEILTKKL RKSDVKNYGR IVLPKREVEE KLPAPSREGI EVIFKDIYSG REWKLKLKYW INGTTRMYIL ENTGDLVNHY KLCMEDYLGL YEDELKNLYL CTKKACDLST VDLFPCANQG KEKEPPDQSV AQETNNTPMS PILVDGTDGG GDDDDEQESS LDEFYESLDN IFDVS // ID A0A072UNL3_MEDTR Unreviewed; 712 AA. AC A0A072UNL3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g088210 {ECO:0000313|EMBL:KEH30966.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH30966.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH30966.1, ECO:0000313|EnsemblPlants:KEH30966, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30966.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30966, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH30966.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30966.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH30966} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30966}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH30966.1; -; Genomic_DNA. DR RefSeq; XP_013456935.1; XM_013601481.1. DR EnsemblPlants; KEH30966; KEH30966; MTR_4g088210. DR GeneID; 25493074; -. DR Gramene; KEH30966; KEH30966; MTR_4g088210. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 79089 MW; 5318BB248DAD6DFA CRC64; MMGLIDLNTT EEDETPSSGS SSSTSIGSVG AGSSVCLELW HACAGPMISL PKKGSVVVYF PQGHLEHLHD FPLSFSDNIP SHVFCRVVDV KLHAEEGNDE VYCQVLLVPE SEQVQQKLRE GVIDGDGDGD GEGEDTDAVM KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QQRPSQELVA KDLHGQEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAA QLKSCSNFSS ISGQQLNLGS LRDIVNALST RCAFSIHYNP RIGSSEFIIP IHKFLKSLDY SYSVGMRFRM RFESEDAAER RFTGLIIRIT DVDPVRWPGS KWKCLVVRWD DMEASRLNRV SPWEIEPSGS SSTTNSLMAT SLKRTKTGLP SSKLEFPVPS RIGTSDFGES LRFQKVLQGQ EILGVDTTFN SINAHSHHQL SELRRCYPGS TYPGIASTGN NIRIPQMNSD VSCNGFGESF RFQKVLQGQE ILPSQPYGQA FSVDEACRNG RFGLFDGHHQ VPRSTNGWSS QTSNNSHFHP SVLMYQQASN MDYNSKINPV MEDNVLQRGS YYASEMKDGT FASTPTNKPI FRGLAHEDTN SFGTHSRDLV TLQRSGQELV STCKNSCRVF GFSLTEGAPI ANKDAEPSAV TCQINPGPPS FTRHIEDDFN PRHSLRSKAV ESYCTKVSNI HPVRDMIIDR VF // ID A0A072URX2_MEDTR Unreviewed; 323 AA. AC A0A072URX2; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH28620.1}; GN OrderedLocusNames=MTR_4g008310 {ECO:0000313|EMBL:KEH28620.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH28620.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH28620.1, ECO:0000313|EnsemblPlants:KEH28620, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH28620.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH28620, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH28620.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH28620.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH28620} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH28620}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH28620.1; -; Genomic_DNA. DR RefSeq; XP_013454589.1; XM_013599135.1. DR EnsemblPlants; KEH28620; KEH28620; MTR_4g008310. DR GeneID; 25491253; -. DR Gramene; KEH28620; KEH28620; MTR_4g008310. DR KEGG; mtr:MTR_4g008310; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR029446; COPB1_appendage_platform_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR Pfam; PF14806; Coatomer_b_Cpla; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH28620.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 217 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 217 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 36496 MW; BE2672C11ACE4439 CRC64; MGPTPLQSAM LMGSPCFPNS IVWSQDNLIA VASGHKSCEC SALEGECGFL AANLYAKSVF GEDALVNVSI EKQSDEGNRS IEAIARIFSY ASIYLFVFLI NNLCRFRVAA TASSLVLLLL QILNHLLRPK SKTNVVLEPR RSSCARNTVP SYREEFGTDL PQLRKRSRSS SSSWGRSYTN TARPLNEIKK ATDQERKRAL DAAEALQINL QSSNPSLIKS MVWSHVYRGF WLGLPRRFCE EHLQKVDYKM VLEDEKGSEH DAVYLRKKTA LSGGWRTFAL KHKLDDGDAV VFELVEAARF KLFLRKRNTF KWTTANEVRY SNL // ID A0A072URY8_MEDTR Unreviewed; 1097 AA. AC A0A072URY8; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g124900 {ECO:0000313|EMBL:KEH32422.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH32422.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH32422.1, ECO:0000313|EnsemblPlants:KEH32422, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH32422.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH32422, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH32422.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH32422.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH32422} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH32422}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH32422.1; -; Genomic_DNA. DR RefSeq; XP_013458391.1; XM_013602937.1. DR EnsemblPlants; KEH32422; KEH32422; MTR_4g124900. DR GeneID; 11445778; -. DR Gramene; KEH32422; KEH32422; MTR_4g124900. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 970 1063 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1097 AA; 122756 MW; 87B3A6280493DBF0 CRC64; MKAPNNGYMP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKDAIL ASDFGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD LHDNTWAFRH IYRGQPKRHL LTTGWSVFIS TKRLFAGDSV LFIRDEKQQL LLGLRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIYYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR QNFPGHPGMP DDGSDVENSF KRAMPWLGDD FGMKDASSSV FPGLSLVQWM SMQQKNQFSG AQSGCFPSML SSNTLHSNLS TDDPSKLLSF QAPALSAPNL QFNKPNLPNQ INQLQQSPTS WPQQQQQQQQ PLQQQQQQQQ QQQQQLQSLS QIPMNQFQQQ RQQQLPESQN LTLLQQQITH QLQKQPQSSQ HAIMNNGVVA SNQITNQFQQ PQPLAYAQLQ QQQQLLQGSI PLQQSIQSAS KNAFPLTSLP HDSQFHQQID QQASLSQRQQ QQTQSQQSSL QALQQSQPQR VQPNLQATQM SQQNTSEQQL QLQFLQKLQQ QQQQQQLLST SNPLLQSQLL QQQNTNQQNQ QLSQLPISQH HNQQFGNNAF STEKLLNSNN LSSSSLMQSQ QLSVNQTRNT QKPLTITRVP STLTDGEAPS CSTSPSTNNC RITQPNLLKR NQQVPTTIGG ILAVEPTSNL IHDLQSTTTD QLEASSGTSY CLDPGNVQQN LPLSNFCMEG DVQSNPRINL PFDSNLDGLM SDTMLSRGFD SQKDLQNLLS NYDAAPRDIE TELSTADISS QSFGLPDMSF KPGCSNDVGI NDTSGVLNNG LRANQNQRMR TYTKVQKRGS VGRCIDVTRY KGYDELRYDL ARMFGIEGQL EDPQRTDWKL VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SSAEVQQMSL DGDLGNVTIP NQASSGTDSG NAWRGQYDDN SAASFNR // ID A0A072UT30_MEDTR Unreviewed; 622 AA. AC A0A072UT30; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g021580 {ECO:0000313|EMBL:KEH29045.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH29045.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH29045.1, ECO:0000313|EnsemblPlants:KEH29045, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH29045.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH29045, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH29045.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH29045.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH29045} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH29045}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH29045.1; -; Genomic_DNA. DR RefSeq; XP_013454997.1; XM_013599543.1. DR EnsemblPlants; KEH29045; KEH29045; MTR_4g021580. DR GeneID; 11412612; -. DR Gramene; KEH29045; KEH29045; MTR_4g021580. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 622 AA; 69187 MW; CC8677A644C6A47F CRC64; MLNHGSNVSA EVGGCSDEEL WKAIAGPLVD VPCVGQSVFY FPQGHMEQLE ASTNQELNQR IPVLKLPTKI LCRIVNIHLL AEQETDEVYA QITLVPESNQ NEPTIPDPPT EELPRPKIHS FCKILTASDT STHGGFSVLR KHATECLPPL DMSQPTPTQE LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGELRVGVR RLARQSSSMP SSVISSQSMH LGVLATASHA VATQTLFVVY YKPRTSQFIV SVNKYLSAVS NKFAVGMRFR MRFESDDSAE SDKRFSGTIV GVEDISPHWA NSKWRSLKVQ WDEPSAITRP DRVSPWEIEP FVSSASTATV QPTAAKTKRP RPTSEIPDVD TTSAASIFWD ARMSQTDMTQ RIMNSKTNNN ATLRNQTEGS WLSSPRSSYP SHLLHDTTDD GKSVSAWPVS QPQSSILNID RMLDQVEKDN KVETATTYRL FGIDLIDHSK KSAAVEIPSS HAVNGNGVTT EVSSSTLSSS DTARKSDISK ASFERKQEPQ QVSPKETQSK QICSRSRTKV QMQGVAVGRA VDLATLNGYD QLIGELEELF DIKGQLQHRN TWEIVFTDDE GDMMLVGDDP WP // ID A0A072UTW5_MEDTR Unreviewed; 474 AA. AC A0A072UTW5; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH32781.1}; GN OrderedLocusNames=MTR_3g005495 {ECO:0000313|EMBL:KEH32781.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH32781.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH32781.1, ECO:0000313|EnsemblPlants:KEH32781, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH32781.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH32781, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH32781.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH32781.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH32781} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH32781}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; KEH32781.1; -; Genomic_DNA. DR RefSeq; XP_013458749.1; XM_013603295.1. DR EnsemblPlants; KEH32781; KEH32781; MTR_3g005495. DR GeneID; 25488444; -. DR Gramene; KEH32781; KEH32781; MTR_3g005495. DR KEGG; mtr:MTR_3g005495; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH32781.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 135 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 242 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 380 474 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 135 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 242 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 380 474 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 474 AA; 54499 MW; 5EC4DAB67DCB9C19 CRC64; MVSWSLSTVH RNPAITMHCS LCGVHITRIP DEFITRFGNE LDNVATITVP DGREWNMELK KCGGQIFFCN NWQQFAEYYC IYYGCYLDFK YEGNSKFNVV IYDRTSVEIS YPFQTRRTNG EPNINCPSSA SNGINPKNTS FCSKVQNNYA YVPGEFAKEH LKPNVPFMLQ NYQGKQWEVS CVLDRASKTP MRITSGFCRF ARENNLSKEV FYNFELIKRK PVVVLQATTS RTAEMEIRES KHFKKAILPS PIHDKEIRIP EVFITIYGSE LKNVATITVP DGLTWKLELK KRGEDVYFCN KWKQFAEYYS LRYGCFMSFK YEGNSKFSVI IFDVTSVEIC YPLKTPSTNG ETNTECPRPT KRSRVEINYA DDSPSEDEGT ELNPSFTSTY KYRTLYINAD FASKHLKRNV VVKLQNCNGG EQWDVCCTRL GRSGLRLGKG FIKFATYNNL SNGDKCKVEL IKKSSPVVLQ LDLV // ID A0A072UY87_MEDTR Unreviewed; 133 AA. AC A0A072UY87; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH30820.1}; GN OrderedLocusNames=MTR_4g083390 {ECO:0000313|EMBL:KEH30820.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH30820.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH30820.1, ECO:0000313|EnsemblPlants:KEH30820, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30820.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30820, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH30820.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30820.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH30820} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30820}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH30820.1; -; Genomic_DNA. DR RefSeq; XP_013456789.1; XM_013601335.1. DR EnsemblPlants; KEH30820; KEH30820; MTR_4g083390. DR GeneID; 11441927; -. DR Gramene; KEH30820; KEH30820; MTR_4g083390. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH30820.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 133 AA; 15030 MW; B80F8FC0BD67B437 CRC64; MQTGGIEPLT GEPYFHVVLS KTHLSTRYGM GPSSSICEEL PSKEVPTILK YRGKSWGMTY NGQNKTKQFD SVSWEKFAED NYLKLGDACV FELMKNSEEE IVFKVQILRG EEEPILLSEF PGTGERDAPF VID // ID A0A072UYN6_MEDTR Unreviewed; 701 AA. AC A0A072UYN6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g088210 {ECO:0000313|EMBL:KEH30965.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH30965.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH30965.1, ECO:0000313|EnsemblPlants:KEH30965, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30965.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30965, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH30965.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH30965.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH30965} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH30965}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; KEH30965.1; -; Genomic_DNA. DR RefSeq; XP_013456934.1; XM_013601480.1. DR EnsemblPlants; KEH30965; KEH30965; MTR_4g088210. DR GeneID; 25493074; -. DR Gramene; KEH30965; KEH30965; MTR_4g088210. DR KEGG; mtr:MTR_4g088210; -. DR KO; K14486; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 77756 MW; 1720E61A95B837A4 CRC64; MMGLIDLNTT EEDETPSSGS SSSTSIGSVG AGSSVCLELW HACAGPMISL PKKGSVVVYF PQGHLEHLHD FPLSFSDNIP SHVFCRVVDV KLHAEEGNDE VYCQVLLVPE SEQVQQKLRE GVIDGDGDGD GEGEDTDAVM KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QQRPSQELVA KDLHGQEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAA QLKSCSNFSS ISGQQLNLGS LRDIVNALST RCAFSIHYNP RIGSSEFIIP IHKFLKSLDY SYSVGMRFRM RFESEDAAER RFTGLIIRIT DVDPVRWPGS KWKCLVVRWD DMEASRLNRV SPWEIEPSGS SSTTNSLMAT SLKRTKTGLP SSKLEFPVPS RIGTSDFGES LRFQKVLQGQ EILGVDTTFN SINAHSHHQL SELRRCYPGS TYPGIASTGN NIRIPQMNSD VSCNGFGESF RFQKVLQGQE ILPSQPYGQA FSVDEACRNG RFGLFDGHHQ VPRSTNGWSS QTSNNSHFHP SVLMYQQASN MDYNSKINPV MEDNVLQRGS YYASEMKDGT FASTPTNKPI FRGLAHEDTN SFGTHSRDLV TLQRSGQELV STCKNSCRVF GFSLTEGAPI ANKDAEPSAV TCQINPGPPS FTRHIEDDFN PRHSLRSKAV ESYCTKGVLQ Y // ID A0A072UZF3_MEDTR Unreviewed; 911 AA. AC A0A072UZF3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:KEH34498.1}; GN OrderedLocusNames=MTR_3g467380 {ECO:0000313|EMBL:KEH34498.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH34498.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH34498.1, ECO:0000313|EnsemblPlants:KEH34498, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH34498.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH34498, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH34498.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH34498.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH34498} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH34498}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; KEH34498.1; -; Genomic_DNA. DR RefSeq; XP_013460465.1; XM_013605011.1. DR EnsemblPlants; KEH34498; KEH34498; MTR_3g467380. DR GeneID; 25491094; -. DR Gramene; KEH34498; KEH34498; MTR_3g467380. DR KEGG; mtr:MTR_3g467380; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 339 440 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 603 653 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 339 440 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100519 MW; 66F07565F1F5618F CRC64; MGSDIGMVNG SCVHEWKKGW GLRSGGFAQL CFKCGFMEEW KSGNLDTLSP FESSVFCNKF HRQQTGWREC NFCNKPIHSG CVVSKSLFEY LDFGGIGCVS CVNTSQLNMI RNTENPKWPV SSTQNNARDI HSAHFDSGLF MSNVDEGKLM QLCRVVEASE SIHMSHAPIN NMITSNGKNN PEVRPSFREG DTGFSNVIKP PVQSLTFATL ENNRPTWEIK NMHESNARPS LNMCLGNPSG NNSFPPSGGE TTDGRLEGKV SPPFHQGPRS RPILPKLLKT GLTMNIETEK GTLSQPRIAR PPGDGRGKNQ LLPRYWPRIT DQELERLSGD LKSTVVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPHITH SEGLPLRVQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QAMDLRAGDT VTFSRIDPGG KLVMGFRKSS NSVDTQDAST SAHSNGGSAK GDTFSGGNEN LPSGSNCADL LRSPNANGEL RLNGHPEPSH LVTGAAGLLK AENGEMTSNN SLDQKNSALE KKRTRNIGLK SKRLLIGNDD SMELRLTWEE AQDLLRPPPS VKPSIVTIED QVFEEYDEPP VFGKRTIFSA SSSGAKEQWA QCDDCSKWRK LPVDALLPPN WACLENVWDT SRSSCSAPDE LSSRELENLL KSSKDFKKRR IVENSKLIQE HEPSGLDALA SLAVLGENLL GPADSSAGAT TKHPRHRPGC SCIVCIQPPS GKGRHKPTCT CNVCTTVKRR FKTLMLRKKK RQSEREADAA AKKEHIHKRV EESDTNGGAS REVANPLENE GGLNKGQVEV GESSAGKIDL NCHPNRDDLQ VDNIAKLSDH IWEHINMNQN GGPRTVNTEM QEGQHSSLVT QSNGEDTRYL SEERCIASTV RNKERKDEVL NHSNESEKNL S // ID A0A072V0U1_MEDTR Unreviewed; 251 AA. AC A0A072V0U1; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH34983.1}; DE Flags: Fragment; GN OrderedLocusNames=MTR_3g075140 {ECO:0000313|EMBL:KEH34983.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH34983.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH34983.1, ECO:0000313|EnsemblPlants:KEH34983, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH34983.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH34983, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH34983.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH34983.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH34983} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH34983}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; KEH34983.1; -; Genomic_DNA. DR RefSeq; XP_013460949.1; XM_013605495.1. DR EnsemblPlants; KEH34983; KEH34983; MTR_3g075140. DR GeneID; 25489504; -. DR Gramene; KEH34983; KEH34983; MTR_3g075140. DR KEGG; mtr:MTR_3g075140; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH34983.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 251 251 {ECO:0000313|EMBL:KEH34983.1}. SQ SEQUENCE 251 AA; 28748 MW; F079216647761540 CRC64; MYDISTFLYS TCEAILNILC PKIRKGYIQH FLHPRVFLFI LLPFRAPREN KNSAMVRNQQ DLPSKLNPTM SLLVDQKINL EDSTGKRWAI TVSEVDGSFA FKKGWDDFSS AHKLEIGDLL VFNCINKYNF DVKIYDQSMC ERIDFSDKRK RKKRSRCSSG SLDAGGTPNS VEVVSENVNV DRSVKCPRTS EDTSYIRNHV YLNDAAIFNN DPMFEEVLGS GDTSYASKFG LLDRKDFFWS QVQDSQVTES L // ID A0A072V0X2_MEDTR Unreviewed; 248 AA. AC A0A072V0X2; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH35336.1}; GN OrderedLocusNames=MTR_3g088515 {ECO:0000313|EMBL:KEH35336.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH35336.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH35336.1, ECO:0000313|EnsemblPlants:KEH35336, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH35336.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH35336, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH35336.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH35336.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH35336} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH35336}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; KEH35336.1; -; Genomic_DNA. DR RefSeq; XP_013461301.1; XM_013605847.1. DR EnsemblPlants; KEH35336; KEH35336; MTR_3g088515. DR GeneID; 25489698; -. DR Gramene; KEH35336; KEH35336; MTR_3g088515. DR KEGG; mtr:MTR_3g088515; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH35336.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 29290 MW; 6F76D19B3117D61D CRC64; MPSIHSKDNQ ITTNTAKLFP DFFKVFLIEK HYERMLIPIA FVKLMLSKQR VLKYFILRDH RGTDWHVKAR SIGRKLYFDD GWKLFREENS LEDNDFLVFR HIENNVFKFK IYELSSMCKK MKMMMMTNDD YTMVEEEEEE KDEGDGDGDD EDDGDADDDV HIIMKEKRIK ELTRESVEAV NINIVEPAKH LYIYSRVNIY LMIDCGLGSI GSSSAAPKHE DDEIDVEMYI QPGNPYFYAK HYRPNELV // ID A0A072V1N6_MEDTR Unreviewed; 223 AA. AC A0A072V1N6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 domain transcription factor {ECO:0000313|EMBL:KEH35747.1}; GN OrderedLocusNames=MTR_3g101520 {ECO:0000313|EMBL:KEH35747.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH35747.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH35747.1, ECO:0000313|EnsemblPlants:KEH35747, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH35747.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH35747, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH35747.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH35747.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH35747} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH35747}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; KEH35747.1; -; Genomic_DNA. DR RefSeq; XP_013461712.1; XM_013606258.1. DR EnsemblPlants; KEH35747; KEH35747; MTR_3g101520. DR GeneID; 11431814; -. DR Gramene; KEH35747; KEH35747; MTR_3g101520. DR Proteomes; UP000002051; Chromosome 3. DR ExpressionAtlas; A0A072V1N6; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 223 AA; 25302 MW; 2F3217A786A5B38A CRC64; MVAKASSYEE SRRKRMEENQ KRMEALSLTK LSQSLHKSSS PISKPSPSKP RTPIKKELVV VRRSGRVANM PAPVYKEILI DSVKIPRNRI SRDYSKRVYA SDEARMEAME KADKLLSDLD SDHPTFVKSM LQSHVTGGFW LGLPNHFCRK NLPKRDEVMT LIDEDGDESP TTYLAHKTGL SAGWRGFAIA HNLVDGDALI FELVKRTAFK VYIIRVNEGK QDD // ID A0A072V3D3_MEDTR Unreviewed; 665 AA. AC A0A072V3D3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:KEH36519.1}; GN OrderedLocusNames=MTR_2g011940 {ECO:0000313|EMBL:KEH36519.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH36519.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH36519.1, ECO:0000313|EnsemblPlants:KEH36519, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36519.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36519, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH36519.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36519.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH36519} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36519}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH36519.1; -; Genomic_DNA. DR RefSeq; XP_013462484.1; XM_013607030.1. DR UniGene; Mtr.24767; -. DR EnsemblPlants; KEH36519; KEH36519; MTR_2g011940. DR GeneID; 11434350; -. DR Gramene; KEH36519; KEH36519; MTR_2g011940. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 353 454 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 630 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 353 454 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 73574 MW; 0EC939B17A71BC5F CRC64; MITDQVAVTM ASSSVPSSSS SSISSSTLKR CFNSDCKDFR STKKGWRLRT GDLAQLCDRC GSAFEEGRFC DIFHANTSGW RNCETCRKRI HCGCIVSSST FVLLDPGGIE CFTCARKNVI LPSNLPWPQS LSLTNRLSER YRDMSGKSWS QLAGSGPVPW KQAPSLFNSA SSSDQPPAVH SLVDLSNNFD KIYGNERLPP SSLEKKNEDL AGISANWNVK LGSSEMVLMN GMRNEDKSGP CLNMCQQPHT LKEDSSSQPF GLSVPYSSPN ERNGQIGVTG IHPQQTPPHL GKQFGGTMHL PLDSSGEAQV RNGRPRADAR GRSQLLPRYW PRCTELELQQ ISVDSNSVIT PLFQKTLSAS DAGRIGRLVL PKKCAETYFP PISQPEGLPL KILDAKGKEW IFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRL EPEGRLVMGF RKATNPLPSD QDNEANKTGN GFSAPEVELA DPSSWSNVDK SGYIAKEALG SKSLISRKRK NNILGSKSKR LKIENEDIIE LKITWQEAQG LLRPPPNHVP SIVVIEGFEF EEYEDAPVLG KPSIFTSDNM GERIQWARCE DCLKWRKLPA CALLPAKWTC SDNSWDPERS SCSAAQELTT EQLENLLPPC NSGLNCFIPS LEQMSQIPCH GLCNI // ID A0A072V3Q3_MEDTR Unreviewed; 488 AA. AC A0A072V3Q3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH32780.1}; GN OrderedLocusNames=MTR_3g005420 {ECO:0000313|EMBL:KEH32780.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH32780.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH32780.1, ECO:0000313|EnsemblPlants:KEH32780, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH32780.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH32780, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH32780.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH32780.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH32780} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH32780}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; KEH32780.1; -; Genomic_DNA. DR RefSeq; XP_013458748.1; XM_013603294.1. DR EnsemblPlants; KEH32780; KEH32780; MTR_3g005420. DR GeneID; 11408476; -. DR Gramene; KEH32780; KEH32780; MTR_3g005420. DR Proteomes; UP000002051; Chromosome 3. DR ExpressionAtlas; A0A072V3Q3; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH32780.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 186 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 387 484 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 186 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 387 484 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 488 AA; 56187 MW; 970AAA04A9A511DC CRC64; MQPHRRRCGR SPAPEKASKH FMKAILPPPD HTKEIRIPNE FIKRFGNELK NVATITVPDG RHEWEMGLKK CGEHVFLSNN WQQFAEYYCI YYGCYLDFNY QGNSKFNVVI YDTTSVEISY SFKTPSTNGD QRIKGPNSAS KRENCAASEF NPKNPYFYSK SNRGFYAYVP SIFAEKYLTL KVPFKLQNSQ GKQWEVYCVL HNKGNSQMRI TGGFGKFARE NNLLEGVTYV FELIKRKPVV VLQVTAICTP PQGRSVQSMT EKEVRESKHF KKAILPSPIH DKEIRIPEDF ITMFGNELEK VATVTVPDGR DWKMRLKKRG NDIFFSNEWE EFAKYYSLGV NGEPNTKCAS PTKRSKVETS ECHGKKAKSV SKHASTRAEV AANEFKPKNP YFCSIIAKQN YTYIPRDFAE KYLKPKVPTK LQNSDGKQWE VFCVPNTVGS SSMRIVKGFS NFVTDNNLSH RDYCVYELIK KKPVVLEVTM FRAVDYLD // ID A0A072V4H4_MEDTR Unreviewed; 613 AA. AC A0A072V4H4; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g014770 {ECO:0000313|EMBL:KEH36566.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH36566.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH36566.1, ECO:0000313|EnsemblPlants:KEH36566, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36566.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36566, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH36566.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36566.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH36566} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36566}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH36566.1; -; Genomic_DNA. DR RefSeq; XP_013462531.1; XM_013607077.1. DR EnsemblPlants; KEH36566; KEH36566; MTR_2g014770. DR GeneID; 11437792; -. DR Gramene; KEH36566; KEH36566; MTR_2g014770. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 613 AA; 66762 MW; E342B9AB8E7B5B86 CRC64; MGLIDLNTTE DDETPYSAIS SSSSSSHSGI STSASAAMVV PPPLPPQGSV CLELWHACAG PLISLPKKGS IVVYVPQGHF EQAHDFPVSA CNIPPHVFCR VLDVKLHAEE GSDEVYCQVL LVPENQQLEQ NVREGVIDAD AEEEDTEAIV KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYG QQRPSQELVA KDLHGSEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAV QLKSSGSFGG LSGMQLDPGS LMDVVNALSK RSAFSVCYNP RVSSSEFIIP VNKFLKSLDC SYSAGMRFRM RFETEDAAER RFTGLIAGIS DADPVRWPGS KWKCLLVRWD DIEASRHNNR VSPWEIEPSG SASNSSNLMA ASLKRTRIGF TSAKLEFPVP NGIGASDFGE SLRFRKVLQG QEILLCPPYG RASFDEARGS GCIGRYDGYP MLGSRNGWPA QMHDAATHLH ASVTSGQVSS PSSVLMFQQA VNPVSNSRYD NINLNQGSYI SEAKSGMFAP SLSDKPILSS GLALEGTTSF GVHDFHNNNN LLDGSRSRDS VLAMRDNQDM VSCKTGCRLF GFSLTDDTHI GGG // ID A0A072V559_MEDTR Unreviewed; 515 AA. AC A0A072V559; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g024430 {ECO:0000313|EMBL:KEH36937.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH36937.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH36937.1, ECO:0000313|EnsemblPlants:KEH36937, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36937.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36937, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH36937.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36937.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH36937} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36937}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH36937.1; -; Genomic_DNA. DR RefSeq; XP_013462902.1; XM_013607448.1. DR EnsemblPlants; KEH36937; KEH36937; MTR_2g024430. DR GeneID; 25486234; -. DR Gramene; KEH36937; KEH36937; MTR_2g024430. DR KEGG; mtr:MTR_2g024430; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 515 AA; 57551 MW; 4EC16B0382EDFD42 CRC64; MVEPKISAIS PPQPSRVEPK LWQYCAGHSV KIPKLHSKVY YFPQGHLEHA CLNFPNTETL SLLDGHRPFN PCIVSAVDYL ADPHTDEVFV KLLLTPITDG CVHEPPAEVR EDEPKGDEFV SSGKTLTLSD ANNGGAFSVP RSCATSIFPQ LDLETKQPSQ ELSVTDIHGK IWEFRHVYRG TPLRHLITTN WSKFVDEKKL VCGDSVIFMK KKNSFGDIFV GIRRHTKFGA AKITKESVME AVELANKNIA FEVEYHPTVE GFCDFVVDAK VVEDAMKINW NCGMKIKFSL KNEDSSKRWS VFKGTISALS APNRPWRMLE VNWDGPEIPH NPKQSPWEVE LISYIPALNL QLPPTKRLRA AQGSTSLDNI ERSSIPMIDF QQSPAKSLNQ ALLDCDTFIE GMQRAQDKKN STATTTNFLN VKANDLIEKN SMARLDIVSI ESNISTPIFG DLSPLNHSIL NPFETKFDGS QKCNTKEVNP GSFILFGKMI HLHPVESNLH DSATKGEDGC MGCNN // ID A0A072V7K3_MEDTR Unreviewed; 1114 AA. AC A0A072V7K3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g043250 {ECO:0000313|EMBL:KEH37616.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH37616.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH37616.1, ECO:0000313|EnsemblPlants:KEH37616, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH37616.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH37616, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH37616.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH37616.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH37616} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH37616}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH37616.1; -; Genomic_DNA. DR RefSeq; XP_013463581.1; XM_013608127.1. DR EnsemblPlants; KEH37616; KEH37616; MTR_2g043250. DR GeneID; 25486537; -. DR Gramene; KEH37616; KEH37616; MTR_2g043250. DR KEGG; mtr:MTR_2g043250; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 986 1070 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 673 696 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1114 AA; 124370 MW; 33F37FF1E6AA3A98 CRC64; MKAPSNGYLA NSGEGERKAI NSELWHACAG PLVSIPPVGS LVVYFPQGHS EQVAASMQKE ADIIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAML ASDMGLKQNQ QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRSSRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRT SPCEFVIPLA KYNKALYTHV SLGMRFRMMF ETEDSGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPGMP EDESEIENAF KRAMPWLGDE LGMKDTSSSV FPGLSLVQWM SMQQNNNQFS AAQSGLLPPS MLSSNAMHGN LNTDDPSKIL NFQSPAALSA PSLQFNKPNL PNQVNQLQQP PASWSQQQQQ QQKMQSLLPM PLNQLQQQQQ RQQQLAGSQN LPQPQQQQPQ LTQQSPQQPQ QQQQHQQPCQ NTTMNNGTIG SNQIPNQCVQ QPVTYSQLQQ QLLSGSMQSQ QNLQSAGKNG LMMTSLPQDS QFQQQIDQQQ AGLLQRQQQQ NQLQQSSLQL LQQSMLQRGP QQPQMSQTVP QNISDQQQQL QLLQKLQQQQ QQQQQQQPLS TSSQLLQSQL LPQQSQQMPQ QPMSQHQPQQ LGNNAFSMEK LLNNNYSSSP LMHPQQLPVN HLQNTQKSPT NTRAPSAFTD GDAPSCSTSP STNNCQTSPP NPLKRNQPDT FGGPSMVETT NNLMQELQSK SDMQSKHELH GVKGPDKQKH KGAINDHMEA SSGTSYGIDP GNIHQNFPLS NFYMDGDVHS QQPRSNIPFA SNLDGLTPDP LLSRGYDSQK DLQNLLSNYG GAPRDIETEL STADISSQSF GVPNMSFKPG CSNEIPIADT GVLNNGLWSN QNQRMRTYTK VQKCGSVGRC IDVTRYKGYE ELRNDLARMF GIEGQLEDPV RVDWKLVYVD HENDILLVGD DPWEEFVNCV QSIKILSSAE VQQMSLEGDL GYNIPITNQA CSGSESGNAW RAQYDDNSAA SFNR // ID A0A072VBC4_MEDTR Unreviewed; 763 AA. AC A0A072VBC4; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39314.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39314.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39314.1, ECO:0000313|EnsemblPlants:KEH39314, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39314.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39314, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39314.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39314.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39314} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39314}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39314.1; -; Genomic_DNA. DR RefSeq; XP_013465279.1; XM_013609825.1. DR EnsemblPlants; KEH39314; KEH39314; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39314; KEH39314; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 168 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 695 763 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 168 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 763 AA; 85025 MW; 71CB24BDB5EA1835 CRC64; MEIDLNDSIT EVKKNVCSNG KCEKSVCCVC TLSSSSSPTC SSSSSTSAIV SSSYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQVASLS LFSSLEIPTY GLQPQILCRV VNVQLLANKE NDEVYTQVAL LPQAELAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLVQH YEPVWICLFE DYKQQRPSQE LVAKDLHGVG WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIIGNQSCS PSFLSSVANA ISAKSMFHVF YSPRASHADF VVPYQKYAKS IRNPVTIGTR FKMKFEMDES PERRCSSGIV TGMSDLDPYK WPKSKWRCLM VRWDEDIGAN HQDRVSPWEI DPSTSLPPLN IQSSRRLKKL RTGLHVESPS HFITAGDSGF MDFDESIRSS KVLQGQEKTS FMSLYYGCDT VTKQKEFDIN SLRHTNLASN GARKITSSEF TRIQPSSYAD FTEMNRFPRV LQAQEIYPLR SLTGKVDLNL NSWGKTNVSY TKYNLHNATK LNFHSLGSEV LQNSSFPYGD IHKVGQGSSM LCSKPTNFQL GNVSFNTPSS QIGALRNEVG LSSFKIRNEQ KLQNDISAAT SLDANIRISN DENFKEMVNP CKLFGFSLSA AAETTSQNLQ NSAKRSCTKV HKQGSLVGRA IDLSRLSSYN DLVSELERLF GMEGLLRDPD KGWRILYTDS ENDIMVVGDD PWQ // ID A0A072VBD1_MEDTR Unreviewed; 633 AA. AC A0A072VBD1; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39319.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39319.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39319.1, ECO:0000313|EnsemblPlants:KEH39319, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39319.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39319, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39319.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39319.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39319} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39319}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39319.1; -; Genomic_DNA. DR RefSeq; XP_013465284.1; XM_013609830.1. DR EnsemblPlants; KEH39319; KEH39319; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39319; KEH39319; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 565 633 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 38 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 633 AA; 71133 MW; C82AD669A3B43B21 CRC64; MCCIQLAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLVQH YEPVWICLFE DYKQQRPSQE LVAKDLHGVG WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIIGNQSCS PSFLSSVANA ISAKSMFHVF YSPRASHADF VVPYQKYAKS IRNPVTIGTR FKMKFEMDES PERRCSSGIV TGMSDLDPYK WPKSKWRCLM VRWDEDIGAN HQDRVSPWEI DPSTSLPPLN IQSSRRLKKL RTGLHVESPS HFITAGDSGF MDFDESIRSS KVLQGQEKTS FMSLYYGCDT VTKQKEFDIN SLRHTNLASN GARKITSSEF TRIQPSSYAD FTEMNRFPRV LQAQEIYPLR SLTGKVDLNL NSWGKTNVSY TKYNLHNATK LNFHSLGSEV LQNSSFPYGD IHKVGQGSSM LCSKPTNFQL GNVSFNTPSS QIGALRNEVG LSSFKIRNEQ KLQNDISAAT SLDANIRISN DENFKEMVNP CKLFGFSLSA AAETTSQNLQ NSAKRSCTKV HKQGSLVGRA IDLSRLSSYN DLVSELERLF GMEGLLRDPD KGWRILYTDS ENDIMVVGDD PWQ // ID A0A072VC05_MEDTR Unreviewed; 823 AA. AC A0A072VC05; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39312.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39312.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39312.1, ECO:0000313|EnsemblPlants:KEH39312, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39312.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39312, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39312.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39312.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39312} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39312}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39312.1; -; Genomic_DNA. DR RefSeq; XP_013465277.1; XM_013609823.1. DR EnsemblPlants; KEH39312; KEH39312; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39312; KEH39312; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 168 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 695 779 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 168 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 823 AA; 91730 MW; D2A8B27E69E9B165 CRC64; MEIDLNDSIT EVKKNVCSNG KCEKSVCCVC TLSSSSSPTC SSSSSTSAIV SSSYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQVASLS LFSSLEIPTY GLQPQILCRV VNVQLLANKE NDEVYTQVAL LPQAELAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLVQH YEPVWICLFE DYKQQRPSQE LVAKDLHGVG WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIIGNQSCS PSFLSSVANA ISAKSMFHVF YSPRASHADF VVPYQKYAKS IRNPVTIGTR FKMKFEMDES PERRCSSGIV TGMSDLDPYK WPKSKWRCLM VRWDEDIGAN HQDRVSPWEI DPSTSLPPLN IQSSRRLKKL RTGLHVESPS HFITAGDSGF MDFDESIRSS KVLQGQEKTS FMSLYYGCDT VTKQKEFDIN SLRHTNLASN GARKITSSEF TRIQPSSYAD FTEMNRFPRV LQAQEIYPLR SLTGKVDLNL NSWGKTNVSY TKYNLHNATK LNFHSLGSEV LQNSSFPYGD IHKVGQGSSM LCSKPTNFQL GNVSFNTPSS QIGALRNEVG LSSFKIRNEQ KLQNDISAAT SLDANIRISN DENFKEMVNP CKLFGFSLSA AAETTSQNLQ NSAKRSCTKV HKQGSLVGRA IDLSRLSSYN DLVSELERLF GMEGLLRDPD KGWRILYTDS ENDIMVVGDD PWHEFCDMVS KIHIYTQEEV EKMTIGMMND DNQSCLEQTP LIMEASKSSS VGQPDSSTTV VRI // ID A0A072VC13_MEDTR Unreviewed; 680 AA. AC A0A072VC13; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39317.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39317.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39317.1, ECO:0000313|EnsemblPlants:KEH39317, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39317.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39317, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39317.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39317.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39317} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39317}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39317.1; -; Genomic_DNA. DR RefSeq; XP_013465282.1; XM_013609828.1. DR EnsemblPlants; KEH39317; KEH39317; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39317; KEH39317; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 552 636 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 38 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 680 AA; 76193 MW; FF149FC1BE310384 CRC64; MCCIQLAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVGWKF RHIYRGQPRR HLLTTGWSIF VSQKNLVSGD AVLFLRGENG ELRLGIRRAA RPRNGLPESI IGNQSCSPSF LSSVANAISA KSMFHVFYSP RASHADFVVP YQKYAKSIRN PVTIGTRFKM KFEMDESPER RCSSGIVTGM SDLDPYKWPK SKWRCLMVRW DEDIGANHQD RVSPWEIDPS TSLPPLNIQS SRRLKKLRTG LHVESPSHFI TAGDSGFMDF DESIRSSKVL QGQEKTSFMS LYYGCDTVTK QKEFDINSLR HTNLASNGAR KITSSEFTRI QPSSYADFTE MNRFPRVLQA QEIYPLRSLT GKVDLNLNSW GKTNVSYTKY NLHNATKLNF HSLGSEVLQN SSFPYGDIHK VGQGSSMLCS KPTNFQLGNV SFNTPSSQIG ALRNEVGLSS FKIRNEQKLQ NDISAATSLD ANIRISNDEN FKEMVNPCKL FGFSLSAAAE TTSQNLQNSA KRSCTKVHKQ GSLVGRAIDL SRLSSYNDLV SELERLFGME GLLRDPDKGW RILYTDSEND IMVVGDDPWH EFCDMVSKIH IYTQEEVEKM TIGMMNDDNQ SCLEQTPLIM EASKSSSVGQ PDSSTTVVRI // ID A0A072VC33_MEDTR Unreviewed; 663 AA. AC A0A072VC33; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g094570 {ECO:0000313|EMBL:KEH39332.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39332.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39332.1, ECO:0000313|EnsemblPlants:KEH39332, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39332.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39332, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39332.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39332.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39332} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39332}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39332.1; -; Genomic_DNA. DR RefSeq; XP_013465297.1; XM_013609843.1. DR UniGene; Mtr.19890; -. DR EnsemblPlants; KEH39332; KEH39332; MTR_2g094570. DR GeneID; 11417580; -. DR Gramene; KEH39332; KEH39332; MTR_2g094570. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 108 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 663 AA; 73810 MW; 1740A158BF50A43C CRC64; MKVAEKSLDP QLWHACAGGM VQMPSVNTKV FYFPQGHAEH AQSNVDFGDS FRIPPLILCR VASVKFLADS ETDEVFSKIT LIPLRNSELE NDDSDGDGSE NSEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTVIA KDVHGEVWKF RHIYRGTPRR HLLTTGWSSF VNQKKLVAGD SIVFLRAESG ELFVGIRRAK RGIVNGLETP SGWSSGNGNC GLGPYGGAFT AFLREENKLG GVGGNLGGGR VKVSGESVKE AMRLAASNQT FEVVYYPRAS TPEFCIKTSA VKAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVV DPIRWPNSPW RLLQVTWDEP DLLHNVKRVS PWLVELVSNM SMIHLAPFSP PRKKLRFPQH PDFPLDVVQF QIPTFSGNPF NPLCCLSSSD NYNAPAAGIQ GARHAQIGIS LSDLHLNNNK FQLGVFPNNR ETISNVSNIT TNHDNKSKES ISCLLTIGNS HKRSLEIKSD NNDNRHQFLL FGQPILTEQQ ISRKDSSDDV LLSKKKDKEK WFFSDTTQSS ISEQFSPAKS STTSASADFC WQLGLDTGHC KVFLESEDVG RTLDLSCVGS YEELYRKLAK MFGIERSEML SRVLYRDATG AVKQTGEEPF RYFSCFIVLS IRI // ID A0A072VCJ6_MEDTR Unreviewed; 709 AA. AC A0A072VCJ6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39316.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39316.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39316.1, ECO:0000313|EnsemblPlants:KEH39316, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39316.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39316, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39316.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39316.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39316} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39316}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39316.1; -; Genomic_DNA. DR RefSeq; XP_013465281.1; XM_013609827.1. DR EnsemblPlants; KEH39316; KEH39316; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39316; KEH39316; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 168 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 168 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 78835 MW; 8C863FD0F90E5292 CRC64; MEIDLNDSIT EVKKNVCSNG KCEKSVCCVC TLSSSSSPTC SSSSSTSAIV SSSYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQVASLS LFSSLEIPTY GLQPQILCRV VNVQLLANKE NDEVYTQVAL LPQAELAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLVQH YEPVWICLFE DYKQQRPSQE LVAKDLHGVG WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIIGNQSCS PSFLSSVANA ISAKSMFHVF YSPRASHADF VVPYQKYAKS IRNPVTIGTR FKMKFEMDES PERRCSSGIV TGMSDLDPYK WPKSKWRCLM VRWDEDIGAN HQDRVSPWEI DPSTSLPPLN IQSSRRLKKL RTGLHVESPS HFITAGDSGF MDFDESIRSS KVLQGQEKTS FMSLYYGCDT VTKQKEFDIN SLRHTNLASN GARKITSSEF TRIQPSSYAD FTEMNRFPRV LQAQEIYPLR SLTGKVDLNL NSWGKTNVSY TKYNLHNATK LNFHSLGSEV LQNSSFPYGD IHKVGQGSSM LCSKPTNFQL GNVSFNTPSS QIGALRNEVG LSSFKIRNEQ KLQNDISAAT SLDANIRISN DENFKEMVNP CKLFGFSLSA AAETTSQNLQ NSAKRSCTKV SDDSNRVIL // ID A0A072VCZ3_MEDTR Unreviewed; 696 AA. AC A0A072VCZ3; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39313.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39313.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39313.1, ECO:0000313|EnsemblPlants:KEH39313, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39313.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39313, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39313.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39313.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39313} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39313}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39313.1; -; Genomic_DNA. DR RefSeq; XP_013465278.1; XM_013609824.1. DR EnsemblPlants; KEH39313; KEH39313; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39313; KEH39313; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 168 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 168 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 77190 MW; 6F934A05879A6824 CRC64; MEIDLNDSIT EVKKNVCSNG KCEKSVCCVC TLSSSSSPTC SSSSSTSAIV SSSYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQVASLS LFSSLEIPTY GLQPQILCRV VNVQLLANKE NDEVYTQVAL LPQAELAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVGWKF RHIYRGQPRR HLLTTGWSIF VSQKNLVSGD AVLFLRGENG ELRLGIRRAA RPRNGLPESI IGNQSCSPSF LSSVANAISA KSMFHVFYSP RASHADFVVP YQKYAKSIRN PVTIGTRFKM KFEMDESPER RCSSGIVTGM SDLDPYKWPK SKWRCLMVRW DEDIGANHQD RVSPWEIDPS TSLPPLNIQS SRRLKKLRTG LHVESPSHFI TAGDSGFMDF DESIRSSKVL QGQEKTSFMS LYYGCDTVTK QKEFDINSLR HTNLASNGAR KITSSEFTRI QPSSYADFTE MNRFPRVLQA QEIYPLRSLT GKVDLNLNSW GKTNVSYTKY NLHNATKLNF HSLGSEVLQN SSFPYGDIHK VGQGSSMLCS KPTNFQLGNV SFNTPSSQIG ALRNEVGLSS FKIRNEQKLQ NDISAATSLD ANIRISNDEN FKEMVNPCKL FGFSLSAAAE TTSQNLQNSA KRSCTKVSDD SNRVIL // ID A0A072VD00_MEDTR Unreviewed; 693 AA. AC A0A072VD00; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39318.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39318.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39318.1, ECO:0000313|EnsemblPlants:KEH39318, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39318.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39318, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39318.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39318.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39318} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39318}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39318.1; -; Genomic_DNA. DR RefSeq; XP_013465283.1; XM_013609829.1. DR EnsemblPlants; KEH39318; KEH39318; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39318; KEH39318; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 565 649 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 38 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 693 AA; 77838 MW; 08F3E98BFD1498BD CRC64; MCCIQLAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLVQH YEPVWICLFE DYKQQRPSQE LVAKDLHGVG WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIIGNQSCS PSFLSSVANA ISAKSMFHVF YSPRASHADF VVPYQKYAKS IRNPVTIGTR FKMKFEMDES PERRCSSGIV TGMSDLDPYK WPKSKWRCLM VRWDEDIGAN HQDRVSPWEI DPSTSLPPLN IQSSRRLKKL RTGLHVESPS HFITAGDSGF MDFDESIRSS KVLQGQEKTS FMSLYYGCDT VTKQKEFDIN SLRHTNLASN GARKITSSEF TRIQPSSYAD FTEMNRFPRV LQAQEIYPLR SLTGKVDLNL NSWGKTNVSY TKYNLHNATK LNFHSLGSEV LQNSSFPYGD IHKVGQGSSM LCSKPTNFQL GNVSFNTPSS QIGALRNEVG LSSFKIRNEQ KLQNDISAAT SLDANIRISN DENFKEMVNP CKLFGFSLSA AAETTSQNLQ NSAKRSCTKV HKQGSLVGRA IDLSRLSSYN DLVSELERLF GMEGLLRDPD KGWRILYTDS ENDIMVVGDD PWHEFCDMVS KIHIYTQEEV EKMTIGMMND DNQSCLEQTP LIMEASKSSS VGQPDSSTTV VRI // ID A0A072VD18_MEDTR Unreviewed; 699 AA. AC A0A072VD18; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g094570 {ECO:0000313|EMBL:KEH39333.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39333.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39333.1, ECO:0000313|EnsemblPlants:KEH39333, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39333.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39333, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39333.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39333.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39333} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39333}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39333.1; -; Genomic_DNA. DR RefSeq; XP_013465298.1; XM_013609844.1. DR UniGene; Mtr.19890; -. DR EnsemblPlants; KEH39333; KEH39333; MTR_2g094570. DR GeneID; 11417580; -. DR Gramene; KEH39333; KEH39333; MTR_2g094570. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 667 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 108 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77571 MW; EB6C57E671E20BFB CRC64; MKVAEKSLDP QLWHACAGGM VQMPSVNTKV FYFPQGHAEH AQSNVDFGDS FRIPPLILCR VASVKFLADS ETDEVFSKIT LIPLRNSELE NDDSDGDGSE NSEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTVIA KDVHGEVWKF RHIYRGTPRR HLLTTGWSSF VNQKKLVAGD SIVFLRAESG ELFVGIRRAK RGIVNGLETP SGWSSGNGNC GLGPYGGAFT AFLREENKLG GVGGNLGGGR VKVSGESVKE AMRLAASNQT FEVVYYPRAS TPEFCIKTSA VKAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVV DPIRWPNSPW RLLQVTWDEP DLLHNVKRVS PWLVELVSNM SMIHLAPFSP PRKKLRFPQH PDFPLDVVQF QIPTFSGNPF NPLCCLSSSD NYNAPAAGIQ GARHAQIGIS LSDLHLNNNK FQLGVFPNNR ETISNVSNIT TNHDNKSKES ISCLLTIGNS HKRSLEIKSD NNDNRHQFLL FGQPILTEQQ ISRKDSSDDV LLSKKKDKEK WFFSDTTQSS ISEQFSPAKS STTSASADFC WQLGLDTGHC KVFLESEDVG RTLDLSCVGS YEELYRKLAK MFGIERSEML SRVLYRDATG AVKQTGEEPF SDFMKTAKRL TILMDSGSKD TRRVCITGTR NAERGLDASN KTGPMSIFV // ID A0A072VDG5_MEDTR Unreviewed; 372 AA. AC A0A072VDG5; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH40064.1}; GN OrderedLocusNames=MTR_1g021435 {ECO:0000313|EMBL:KEH40064.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40064.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40064.1, ECO:0000313|EnsemblPlants:KEH40064, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40064.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40064, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40064.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40064.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40064} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40064}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40064.1; -; Genomic_DNA. DR RefSeq; XP_013466025.1; XM_013610571.1. DR EnsemblPlants; KEH40064; KEH40064; MTR_1g021435. DR GeneID; 25482083; -. DR Gramene; KEH40064; KEH40064; MTR_1g021435. DR KEGG; mtr:MTR_1g021435; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40064.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 41832 MW; 30FD2C4FB01BBDEC CRC64; MAGSNKSWEE EIYWNHFQFI HFTLFLHSTT NFQQQPALPK TFSDNLKKKL PENVTLKGPS GVVWNIGLTT IDDTVYFTNG WQQFVNDHSL KESDFLFFKY NGESLFEVLI FDGRSFCEKA ASYFVGKCGH AQTEQGGIKA KDTNKSVEEI DTAFDAGVES ASPEQLMADA VTKTTPVAAP SQSIGKRIKR PVNKFTIVLG LPKAATSHKR AHDLVACNKE HSEASIVRRS WKEDEKKTAQ SFTSSFPYFV KIFKTGDINV SRTMKIPYHF SAAHLPDCKT EVTLRNSRGE CWTVNSIPYA KGKTVQTNPY AKRRPVHTFC GGWVAFVRDN NIKFGDTCIF ELVSDYVMQV HISGVGKEGL DQQNGHVKLN SM // ID A0A072VE24_MEDTR Unreviewed; 302 AA. AC A0A072VE24; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH40067.1}; GN OrderedLocusNames=MTR_1g021440 {ECO:0000313|EMBL:KEH40067.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40067.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40067.1, ECO:0000313|EnsemblPlants:KEH40067, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40067.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40067, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40067.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40067.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40067} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40067}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40067.1; -; Genomic_DNA. DR RefSeq; XP_013466028.1; XM_013610574.1. DR EnsemblPlants; KEH40067; KEH40067; MTR_1g021440. DR GeneID; 11417208; -. DR Gramene; KEH40067; KEH40067; MTR_1g021440. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40067.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 34074 MW; F98C2841DEC3B823 CRC64; MEVDGSRSWE EDIYWNNFQF IHFTQFLQTT DFQQQLALPK TFSDNLKKKL PENVTLKGPS GAVWDIGLTT RDNTVYFVGG WERFVKDHSL KENDFLVFKY NGESLFEVLI FDGDNFCEKA TSYFVRKCGH AQTEEGGSKV KNTNTSVEEV NTASNGGVDC GSPETFRVRR LDSIRTPLAV PVKTTDKMTL NAFFESASPK ELPVYFPKQP TGQRTKKPAN EVTPGQTKKR GRPPKEGNSR EGALDLRASN KEHSEAAQSR LSSAKDEKKL AQSFTSTFPY FVKIIKTFNV DGPRILVRCS PL // ID A0A072VEC0_MEDTR Unreviewed; 648 AA. AC A0A072VEC0; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:KEH36520.1}; GN OrderedLocusNames=MTR_2g011940 {ECO:0000313|EMBL:KEH36520.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH36520.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH36520.1, ECO:0000313|EnsemblPlants:KEH36520, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36520.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36520, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH36520.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH36520.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH36520} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH36520}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH36520.1; -; Genomic_DNA. DR RefSeq; XP_013462485.1; XM_013607031.1. DR UniGene; Mtr.24767; -. DR EnsemblPlants; KEH36520; KEH36520; MTR_2g011940. DR GeneID; 11434350; -. DR Gramene; KEH36520; KEH36520; MTR_2g011940. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 353 454 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 630 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 353 454 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 648 AA; 71720 MW; C12E8E2436A8A780 CRC64; MITDQVAVTM ASSSVPSSSS SSISSSTLKR CFNSDCKDFR STKKGWRLRT GDLAQLCDRC GSAFEEGRFC DIFHANTSGW RNCETCRKRI HCGCIVSSST FVLLDPGGIE CFTCARKNVI LPSNLPWPQS LSLTNRLSER YRDMSGKSWS QLAGSGPVPW KQAPSLFNSA SSSDQPPAVH SLVDLSNNFD KIYGNERLPP SSLEKKNEDL AGISANWNVK LGSSEMVLMN GMRNEDKSGP CLNMCQQPHT LKEDSSSQPF GLSVPYSSPN ERNGQIGVTG IHPQQTPPHL GKQFGGTMHL PLDSSGEAQV RNGRPRADAR GRSQLLPRYW PRCTELELQQ ISVDSNSVIT PLFQKTLSAS DAGRIGRLVL PKKCAETYFP PISQPEGLPL KILDAKGKEW IFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRL EPEGRLVMGF RKATNPLPSD QDNEANKTGN GFSAPEVELA DPSSWSNVDK SGYIAKEALG SKSLISRKRK NNILGSKSKR LKIENEDIIE LKITWQEAQG LLRPPPNHVP SIVVIEGFEF EEYEDAPVLG KPSIFTSDNM GERIQWARCE DCLKWRKLPA CALLPAKWTC SDNSWDPERS SCSAAQELTT EQLENLLPPC NSEEGKTT // ID A0A072VEM7_MEDTR Unreviewed; 284 AA. AC A0A072VEM7; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH40066.1}; GN OrderedLocusNames=MTR_1g021440 {ECO:0000313|EMBL:KEH40066.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40066.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40066.1, ECO:0000313|EnsemblPlants:KEH40066, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40066.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40066, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40066.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40066.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40066} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40066}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40066.1; -; Genomic_DNA. DR RefSeq; XP_013466027.1; XM_013610573.1. DR EnsemblPlants; KEH40066; KEH40066; MTR_1g021440. DR GeneID; 11417208; -. DR Gramene; KEH40066; KEH40066; MTR_1g021440. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40066.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 32151 MW; 3F22AB74EE86C4FD CRC64; MEVDGSRSWE EDIYWNNFQF IHFTQFLQTT DFQQQLALPK TFSDNLKKKL PENVTLKGPS GAVWDIGLTT RDNTVYFVGG WERFVKDHSL KENDFLVFKY NGESLFEVLI FDGDNFCEKA TSYFVRKCGH AQTEEGGSKV KNTNTSVEEV NTASNGGVDC GSPETFRVRR LDSIRTPLAV PVKTTDKMTL NAFFESASPK ELPVYFPKQP TGQRTKKPAN EVTPGQTKKR GRPPKEEAAQ SRLSSAKDEK KLAQSFTSTF PYFVKIIKTF NVDGPRILVR CSPL // ID A0A072VF37_MEDTR Unreviewed; 221 AA. AC A0A072VF37; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH40063.1}; GN OrderedLocusNames=MTR_1g021295 {ECO:0000313|EMBL:KEH40063.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40063.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40063.1, ECO:0000313|EnsemblPlants:KEH40063, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40063.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40063, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40063.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40063.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40063} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40063}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40063.1; -; Genomic_DNA. DR RefSeq; XP_013466024.1; XM_013610570.1. DR EnsemblPlants; KEH40063; KEH40063; MTR_1g021295. DR GeneID; 25482082; -. DR Gramene; KEH40063; KEH40063; MTR_1g021295. DR KEGG; mtr:MTR_1g021295; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40063.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 36 59 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 116 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 24352 MW; A782DAE8234098E4 CRC64; MADCGGGFFN NRHDLFVKDD ITMVFCGGYG GAYGDFWLSV MVCHLPSIIL LLFILAFPLM APIKLSLSQV ISEAASPHRS GKVDDHCILS GASLSKSTAL IEEKIAQSFS SSFPYFVKII KAFNVSGSRT INMPYQFSTA HLPNSDTPIF LQNLKGEHWL VNSVTKTKIH TSHSLCGGWM DFVRGNSIKV GDVCIFELIQ ECEFRVRIIA EVGKDGLVLP R // ID A0A072VFE7_MEDTR Unreviewed; 433 AA. AC A0A072VFE7; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=B3 domain transcription factor VRN1-like protein {ECO:0000313|EMBL:KEH40759.1}; GN OrderedLocusNames=MTR_1g034240 {ECO:0000313|EMBL:KEH40759.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40759.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40759.1, ECO:0000313|EnsemblPlants:KEH40759, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40759.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40759, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40759.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40759.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40759} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40759}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40759.1; -; Genomic_DNA. DR RefSeq; XP_013466718.1; XM_013611264.1. DR EnsemblPlants; KEH40759; KEH40759; MTR_1g034240. DR GeneID; 25482673; -. DR Gramene; KEH40759; KEH40759; MTR_1g034240. DR KEGG; mtr:MTR_1g034240; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 299 394 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 299 394 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 49148 MW; CDB520054262A110 CRC64; MPPRPSFHKL ILPSSLQTRQ LRIPDNFLRK YGAQLSTIAT LTVPDGTVWR LGLKKVDNRI WFVDGWQDFV QRYAIGIGYF LVFTYEGNSN FIVHIFNMST AELNYQSAMR SRTEGPCYAN YHPIFEDIED IDSFEFLDSS PSNLTPGALQ DKVFSGSLDQ LTPAKNHTPS LQNLFNGGSK LNHVNWGDIG GTLSSKSAIQ STRDIGVQFN ANEFKKSTEG LKLRYPNEEG VNNTDTKKTS RKKRKSDPSA QEATAENDEE AERYRFYESA SARKRTVTAE ERERAINESK TFEPTNPFCR VVLRPSYLYR GCIMYLPSCF AEKNLNGVSG FIKLQISDGR QWPVRCLYKG GRAKLSQGWY EFTLENNLGE GDICVFELLR TREVVLQVTL FRVKEDDSGL FNPSTLPSQN VSHAKMLNPH LQHRVSSTKS AKN // ID A0A072VFI0_MEDTR Unreviewed; 1265 AA. AC A0A072VFI0; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_1g024025 {ECO:0000313|EMBL:KEH40213.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40213.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40213.1, ECO:0000313|EnsemblPlants:KEH40213, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40213.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40213, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40213.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40213.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40213} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40213}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40213.1; -; Genomic_DNA. DR RefSeq; XP_013466172.1; XM_013610718.1. DR EnsemblPlants; KEH40213; KEH40213; MTR_1g024025. DR GeneID; 25482193; -. DR Gramene; KEH40213; KEH40213; MTR_1g024025. DR KEGG; mtr:MTR_1g024025; -. DR KO; K14486; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 754 838 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1265 AA; 141164 MW; 9721761DB517CB9E CRC64; MASLDEKAKS VGGVVGGQTL VAEMKLLKEM QEHCGVRKTL NSELWHACAG PLVSLPQVGG LVYYFPQGHS EQVAASTRRI ATSQIPNYPS LPSQLLCQVQ NVTLHADKET DEIYAQMTLQ PLNSEKEVFP VSEFGLSKSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTIQ PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL RVGVRRANRQ QTTLPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA CPSDFVIPLA KYRKSVYGTQ LSAGMRFGMM FETEESGKRR YMGTIVGISD VDPLRWPGSK WRNIQAEWDE PGCGDKQNRV SVWEIETPES LFIFPSLTSS LKRPLQSGYL ENEWGTLIRR PFIKVPENGG TVEISSSMQN LYQENMKMFY KPQVINNSGA FLPIMQQDYS PTRVPFQDMK STQALENPKV HLSSTESIPN NTFNMHSLLK NDQPEKLQPL AKTDNSKLES EVLPDHIFDF PSFESCSNIE KVNTANQLTY HNQNQSQNPL LAHTSPWTMQ QPQLESSMSH PQLIDMVQPD SSIVNSMLPQ LDVDEWMMYS SCQPQVVNPS IPSMNQEVWD QYVKNFNLRD LSAESNNQSE ICVNVDASNS VSTTVVDPST SNTIFDDFCS MKDKDFQHPQ DCMVGNLSSS QDGQSQITSA SLAESHAFSL RDNSGGTSSS HVDFDESSFL QNNNSWKQVA APIRTYTKVQ KAGSVGRSID VTTFKNYEEL IRAIECMFGL DGLLNDTKGS GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC IRILSPSEVK EMSEEGMKLL NSGALQGINV DEKSPLRVGV RRANRQQTTL PSSVLSADSM HIGVLAAAAH AAANRIPFTI FYNPRACLSD FVIPLAKSVY GTQLSVGMRF GCLRPRNRAE WDEPGCGDKQ NRLQPLAKTD NSKLESEVLP DHMFDFPSFE SCSNIEKLES SMSHPQLIDM VQPDSSIANS MLPQLDVDEW MMYSSCQPQV VNPSIPSMNQ EMWDQYVKNF NLRDLSAESN NQSEICVNVD ATNSVSTTMV DPSTTNTIFD EFCSMKDKDF QHPQDCAVGN LSSSQDGQSQ ITSASLAESH AFSLRDNSGG TSSSHVDFDE SIFLQNNNSW KQVAAPIRTY TKLEKAGSVG RSIDVTTFKN YEELIRAIEY MFGLDGLLND TKDDPWKEFV GCVRRIRILS PSEVKEMSEE GMKLLNSGAL QGINV // ID A0A072VFJ2_MEDTR Unreviewed; 332 AA. AC A0A072VFJ2; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH40799.1}; GN OrderedLocusNames=MTR_1g035490 {ECO:0000313|EMBL:KEH40799.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40799.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40799.1, ECO:0000313|EnsemblPlants:KEH40799, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40799.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40799, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40799.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40799.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40799} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40799}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40799.1; -; Genomic_DNA. DR RefSeq; XP_013466758.1; XM_013611304.1. DR EnsemblPlants; KEH40799; KEH40799; MTR_1g035490. DR GeneID; 25482713; -. DR Gramene; KEH40799; KEH40799; MTR_1g035490. DR KEGG; mtr:MTR_1g035490; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40799.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 237 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 237 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 38484 MW; 840D8B4C9F93FAAC CRC64; MKNELICIIN FTYYLKAFDE GAEEGESSDD EATEEDQESD ESSDESSYED EMPKQARRRT RNGKRKVSMD FDTTQPKFSG SKKVAMVKKA RKYPTVNENP FFVVIMTQSY TNGYFLWVPS KFSREHLNNF KGTATIRVGN ERSVEVSLRY YDTKDKSCVG GGWKIFREKY NLQVDDVCKF EMIQRRPFSF TVTITRARNG PSEGVPCGNN VVKQKDIEGT SSGSRPKENF LDEGRDVMKH NTLKVLVKNK APSVPKEFMK KGSNENIVEL KMGRKSWFVK VNYYESVHGW RFNKGWRKFM EECKVEIGDT CLFNLIDERK FVFDVSIIGR TH // ID A0A072VFJ7_MEDTR Unreviewed; 406 AA. AC A0A072VFJ7; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH40804.1}; GN OrderedLocusNames=MTR_1g035570 {ECO:0000313|EMBL:KEH40804.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40804.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40804.1, ECO:0000313|EnsemblPlants:KEH40804, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40804.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40804, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40804.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40804.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40804} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40804}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40804.1; -; Genomic_DNA. DR RefSeq; XP_013466763.1; XM_013611309.1. DR EnsemblPlants; KEH40804; KEH40804; MTR_1g035570. DR GeneID; 25482718; -. DR Gramene; KEH40804; KEH40804; MTR_1g035570. DR KEGG; mtr:MTR_1g035570; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40804.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 192 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 303 397 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 192 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 303 397 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 47273 MW; 55CD81AFB6B7C2DE CRC64; MSFEHVPDFH RIILQDKKLR VPKIYVEKYW KGISNPIFLK FPNGVQQEIF WAESNGDIWF QKNWESFAKF LKYGYLLTFK FIGGSYFKVK IFGANTLEIN YANIKSVDEG AEDTEEGIES DESSDDEDNE ESDEVSDESS DEVEIPKQAQ RTRNGKRKFS GSNKVSMVKK AKKYPMAQSE AVNERANNEN PFFEVTMSHT YTNGYLLWLP REFSREHLEN FNGTATIRVG KERSVEVSLR YYDTKEKSCL GGGWKIFREK YNLQVDDVCK FEMIQRRPFL FTVTITRAGK EPIPKKLLEG PDVMKPYTFK VLVKNTAPSV PKEFMKRGCH ENIVELKMGR KSWFVKVNYY ESICGCRFSK GWRKFMKECK VEIGDTCLLK LIDERKFVFD VSIAGKNPLA VCSPRY // ID A0A072VG30_MEDTR Unreviewed; 370 AA. AC A0A072VG30; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain transcription factor VRN1-like protein {ECO:0000313|EMBL:KEH40757.1}; GN OrderedLocusNames=MTR_1g034210 {ECO:0000313|EMBL:KEH40757.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40757.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40757.1, ECO:0000313|EnsemblPlants:KEH40757, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40757.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40757, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40757.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40757.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40757} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40757}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40757.1; -; Genomic_DNA. DR RefSeq; XP_013466715.1; XM_013611261.1. DR EnsemblPlants; KEH40757; KEH40757; MTR_1g034210. DR GeneID; 25482671; -. DR Gramene; KEH40757; KEH40757; MTR_1g034210. DR KEGG; mtr:MTR_1g034210; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 265 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 265 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 370 AA; 42296 MW; 50FF02D3BB8C8E05 CRC64; MPLLPSFHKL IFPTTLQSKQ LRIPDNFLRK HGDQLSTVAT LTIPGGSVWR LGLKKVDNSI CFVDGWQDFV QRYSIGIGYL LVFIYEGRSN FIIHIFRTAE LNYDSTMKSR TEGPFYEAYN YVFEGIEDID SFDFLDSAPS NPTGALQGKD STGCMDQLIP ADNHIQKRQE NKDTKKTSRK KRGSRKSDPS AQEASTENDE EAERKRDTKK TSRKKRKSDL SAQEASTENV AYESASARVR HNVSDEERER AMNEANAFEP TNPYCRVSLR PSYLYRGCIM YLPTKFRANL KGVSGFIPLQ TSDGEKQWRV RCLDNEGRIK LSQGWYEFTQ ENGLGEGDIC VFELLNTRYV VLQVTLFRLK EDEPSLAAPR // ID A0A072VG92_MEDTR Unreviewed; 383 AA. AC A0A072VG92; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH40802.1}; GN OrderedLocusNames=MTR_1g035520 {ECO:0000313|EMBL:KEH40802.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40802.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40802.1, ECO:0000313|EnsemblPlants:KEH40802, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40802.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40802, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40802.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40802.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40802} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40802}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40802.1; -; Genomic_DNA. DR RefSeq; XP_013466761.1; XM_013611307.1. DR EnsemblPlants; KEH40802; KEH40802; MTR_1g035520. DR GeneID; 25482716; -. DR Gramene; KEH40802; KEH40802; MTR_1g035520. DR KEGG; mtr:MTR_1g035520; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40802.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 383 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 290 383 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 383 AA; 43359 MW; 34D67BA5A5EE8E5D CRC64; MSQLCVDLHV DTQYISLLFT TAQSSLLHKA TCLFNKTALA ALTMGVVGKL KECISIYMFN NANFNTKNST SSIQIYTHMF LKTCLQMIPR NFAERYWNDV PNPISLKLPN GSACKMNWVQ RGDGIWLQNW KRFAWSLRSG DLLVFQYKGG SDFHVIILDD SKLEIDYSSM RCNDDQANTK ESDDDDDDDD DYECVEIPSD SENTKIPLKK KRTNSNGIAT TATTPQGSNI HMRKTNINAS QQKVSENQGV QEKSETTPVK DMEYAGNFGD GISKSCTKTY GFRDSVSLNL HEMFKVFITS SDKLVVLPSE LLKKHGIFSG NSVELRVGEG TWFVDVSYNE HLDHGWFTKG WQEFVRDCKV KTGDTCLFET IDVQNHVFKV SIV // ID A0A072VG97_MEDTR Unreviewed; 414 AA. AC A0A072VG97; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH40807.1}; GN OrderedLocusNames=MTR_1g035620 {ECO:0000313|EMBL:KEH40807.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40807.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40807.1, ECO:0000313|EnsemblPlants:KEH40807, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40807.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40807, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40807.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40807.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40807} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40807}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40807.1; -; Genomic_DNA. DR RefSeq; XP_013466766.1; XM_013611312.1. DR EnsemblPlants; KEH40807; KEH40807; MTR_1g035620. DR GeneID; 25482721; -. DR Gramene; KEH40807; KEH40807; MTR_1g035620. DR KEGG; mtr:MTR_1g035620; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40807.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 180 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 357 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 357 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 414 AA; 48350 MW; A6950A5877EC9276 CRC64; MSLHHPEEFL KIVQNHELHK GELRVPKKFV EKYWKRIPNP VILRLPNGAQ KKIFWVERDG NIWLKRNWEN FAKSLKRGYA LVFKYIGGPY FKVKIFGHNT LEKDYSNIKF IDESCEGREE VQEVVELSDD NVNSAGTSQR RKSGKRKINQ QKIKGSKRGM IKKTKKCSTI SERDNNENPS FELDLSQSYA HGYTLRIPSD FSRTYLNENL KGSSASIRFG ENMPMKVKVM FQDVKYNRTC FVTNGWKPFA KKYNLQVGNV CKFVMTQLHP LSFTITITQA KGYEGIISCD DNIGKKRGIE GSSRSCHVLP TDLEGGIVME PNTIEIRVNS TYPYIQHEFF KRHKECHGKF VQFTNGGKSW PVKVQYYERT CRFYAGWRKF KEDCELKIGD TCKLKLIDDK KFVFKVSIER MQHQ // ID A0A072VGJ6_MEDTR Unreviewed; 324 AA. AC A0A072VGJ6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH41174.1}; GN OrderedLocusNames=MTR_1g046200 {ECO:0000313|EMBL:KEH41174.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH41174.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH41174.1, ECO:0000313|EnsemblPlants:KEH41174, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41174.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41174, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH41174.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41174.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH41174} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41174}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH41174.1; -; Genomic_DNA. DR RefSeq; XP_013467138.1; XM_013611684.1. DR EnsemblPlants; KEH41174; KEH41174; MTR_1g046200. DR GeneID; 25483040; -. DR Gramene; KEH41174; KEH41174; MTR_1g046200. DR KEGG; mtr:MTR_1g046200; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH41174.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 285 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 285 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 38128 MW; 2D84282E57358881 CRC64; MAKDYPDFFK VFSTEKHTER MRIPNAFVNL MRSKRKVIKD FILRDRRGRD WHVKARLIGD ELYFDGGWKQ FREENSLEED DFLVFTHIEN TVFRFKILEL SSMCEKKKVS VVEENNNMED EEEVNDGDDD DEDDDYEYDA AAAADDDGDD DDENERMYKE ISRSKHQHCR TCCKCKAGNI GSSSARSKLE DDEIDAEIYI QPGNPHFIAK YIHSRPNELF IPKNVIKDFC LCFTKHVTLE CCHCKDIQSN DLAAYHHILP QISTIHIEKR GQVRTWRDGR VRVLGWEDFC RKSKITENDS CLCEIVLRED GTIRILRVHV VRKE // ID A0A072VGK8_MEDTR Unreviewed; 335 AA. AC A0A072VGK8; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH41184.1}; GN OrderedLocusNames=MTR_1g046340 {ECO:0000313|EMBL:KEH41184.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH41184.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH41184.1, ECO:0000313|EnsemblPlants:KEH41184, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41184.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41184, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH41184.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41184.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH41184} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41184}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH41184.1; -; Genomic_DNA. DR RefSeq; XP_013467148.1; XM_013611694.1. DR EnsemblPlants; KEH41184; KEH41184; MTR_1g046340. DR GeneID; 25483050; -. DR Gramene; KEH41184; KEH41184; MTR_1g046340. DR KEGG; mtr:MTR_1g046340; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH41184.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 293 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 293 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 335 AA; 39465 MW; 8BE8E8C5E3F61FD0 CRC64; MTNNAKEYPN FFKVFLTKKH SDRMLIPTAF VKLMISKQRL LKDFILRDHR GSDWHVKVCS IGNKLYFDDG WKLFREENSL EDNDFLVFTH IENNVFKFKI LELSSMCQKM KVMDEEENTN TIEDEEEADG DDDYTMVEEE EDSDDNDDVD EEEDEDVADI IMKEKRNKGA GKGINRSCEH QHGRTFKRWS IGSSSAAPNL EDDEIDAEMY IQPGNPYFYA KHYDYRPNIL NISKNVIKDF CLCFTKHITI VCCHCKDVQS NGIAAYRHIL PQMRTKHIEK RGEVRKWKDG RVFVRGWEDF CRKSKITEND KCLCELVLRN GKSIEMLRVH VVREK // ID A0A072VGN2_MEDTR Unreviewed; 324 AA. AC A0A072VGN2; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=B3 domain transcription factor VRN1-like protein {ECO:0000313|EMBL:KEH40756.1}; GN OrderedLocusNames=MTR_1g034210 {ECO:0000313|EMBL:KEH40756.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40756.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40756.1, ECO:0000313|EnsemblPlants:KEH40756, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40756.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40756, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40756.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40756.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40756} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40756}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40756.1; -; Genomic_DNA. DR RefSeq; XP_013466716.1; XM_013611262.1. DR EnsemblPlants; KEH40756; KEH40756; MTR_1g034210. DR GeneID; 25482671; -. DR Gramene; KEH40756; KEH40756; MTR_1g034210. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 36953 MW; 1C61E1BEFBD9957A CRC64; MPLLPSFHKL IFPTTLQSKQ LRIPDNFLRK HGDQLSTVAT LTIPGGSVWR LGLKKVDNSI CFVDGWQDFV QRYSIGIGYL LVFIYEGRSN FIIHIFRTAE LNYDSTMKSR TEGPFYEAYN YVFEGIEDID SFDFLDSAPS NPTGALQGKD STGCMDQLIP ADNHIQKRQE NKDTKKTSRK KRGSRKSDPS AQEASTENDE EAERKRDTKK TSRKKRKSDL SAQEASTENV AYESASARVR HNVSDEERER AMNEANAFEP TNPYCRVSLR PSYLYRGCIM YLPTKFRANL KGVSGFIPLQ TSDGEKQWRV RCLDNEGRIK LSQG // ID A0A072VGT1_MEDTR Unreviewed; 396 AA. AC A0A072VGT1; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH40796.1}; GN OrderedLocusNames=MTR_1g035460 {ECO:0000313|EMBL:KEH40796.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40796.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40796.1, ECO:0000313|EnsemblPlants:KEH40796, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40796.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40796, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40796.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40796.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40796} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40796}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40796.1; -; Genomic_DNA. DR RefSeq; XP_013466755.1; XM_013611301.1. DR EnsemblPlants; KEH40796; KEH40796; MTR_1g035460. DR GeneID; 25482710; -. DR Gramene; KEH40796; KEH40796; MTR_1g035460. DR KEGG; mtr:MTR_1g035460; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40796.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 396 AA; 46278 MW; 4DA5B056DF90B54A CRC64; MIPKGFTRDH MSDMLNPVFL KTPDGKKWEM CTTKINGDIW FQKGWKEFAT YYSLDHGHMV LFQYEENSHF VVHIFSKSTL EIEYPFHGNQ HEQNNFDQQS SDEDSIEILD KSPSCKKKTR PKSPIMCPQP HKKLRSDSSE GVGTSSRFQN LPKHHVQSSE DTGASAEFRK VKHELEQEQY QEQEQLNRVR SFKSNNPSFR ITMKSSHIYS HSLYVPSQFA NNHMKKEQSD ILLQLLDGRV WDAKYCSAKI NGGWKKFAVH NKLKIGDVCI FELTKSQYLT LKVIIFRLEE DPHSPSPQES IQRDKDFSDV ESETIMTNKE EKATQKTSLR TKAEFLTNEA ENQADKFKSK YPFFKVDIMP NQRGHSRLLV PNSFITNYLD NKEQMVMLKF GKKLWL // ID A0A072VHA4_MEDTR Unreviewed; 465 AA. AC A0A072VHA4; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH40808.1}; GN OrderedLocusNames=MTR_1g035640 {ECO:0000313|EMBL:KEH40808.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40808.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40808.1, ECO:0000313|EnsemblPlants:KEH40808, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40808.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40808, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40808.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40808.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40808} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40808}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40808.1; -; Genomic_DNA. DR RefSeq; XP_013466767.1; XM_013611313.1. DR EnsemblPlants; KEH40808; KEH40808; MTR_1g035640. DR GeneID; 25482722; -. DR Gramene; KEH40808; KEH40808; MTR_1g035640. DR KEGG; mtr:MTR_1g035640; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40808.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 185 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 185 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 465 AA; 53648 MW; 01B17BD8E22E9E3D CRC64; MSFQYIPDFH RIILQDKKLR VPKKYVEKYW KGISNPIFLK LPNGVQQKIF WVENNGDIWF QKNWDNFAKS LKYGNLLTFK YIGGSYFKVK IFGVNALEID YSNIKSVDEV VEATKEDKEI VDLTDESEIP KEAQMMTNGK RKMSIDIDTL KQKFPGRNIE DTVKKVKKSS RIEVVNETTN NVNPFFEVLM TQTYAHGHIL VIPCNFSRSY LNKFEGIASL RVGEDTAMKV DIVFNNKRSS KSMSTGWKLF NQKYNLQVGD KCKFVMTQRE PLLFTITITK AIKGPNPKKL QGYKEGISSV DRDFLKRKDT EETCRTLPKV HALQGYKEGI SSGDRDILKR NGTGETYRTL PKVHALQGYK EWTSSCDKNI LQRKDIGETS SWSCPKEHAS HESKGQNVMK HNTFKVLVNS KRPHAPKRFM GRGCREKFVE LKMGDNHESK VEIGNTCLLE RIDEKKYVFK VSIVG // ID A0A072VIA5_MEDTR Unreviewed; 337 AA. AC A0A072VIA5; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH41183.1}; GN OrderedLocusNames=MTR_1g046320 {ECO:0000313|EMBL:KEH41183.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH41183.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH41183.1, ECO:0000313|EnsemblPlants:KEH41183, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41183.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41183, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH41183.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41183.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH41183} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41183}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH41183.1; -; Genomic_DNA. DR RefSeq; XP_013467147.1; XM_013611693.1. DR EnsemblPlants; KEH41183; KEH41183; MTR_1g046320. DR GeneID; 25483049; -. DR Gramene; KEH41183; KEH41183; MTR_1g046320. DR KEGG; mtr:MTR_1g046320; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH41183.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 40086 MW; 01F41007EE84D24F CRC64; MTNNAKEYPG FFKVFLKEKH SERMLIPNAF MNLVHSKRRV IKDFILRDRR RRDWYVKARR IGDEFYFDDG WKKFRQENCL VENDFLVFTH IENNVFKFKI LELSSMCEKM PVMEDEENNN MMEDEEEEKD SDDVDYDDND DHDAEEGNDS DDDDDDGSEN IRKETQSENV YKENSKSGHQ HCRTCKAWDI GSSSAGSNLE DDEIDAEMYI QPGNPHFIAK HSLYRPNELH FPKNVIKDFC VCFTKYVNLV CCHCKDIKRN EIEAYHHILP QISTRHTEKR GEIRTWKNGR VLVLGWEDFC RKCKITENDR CLCELVMRNG EAIEMIRVHI VRKVNKK // ID A0A072VIL9_MEDTR Unreviewed; 830 AA. AC A0A072VIL9; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH41436.1}; GN OrderedLocusNames=MTR_1g050845 {ECO:0000313|EMBL:KEH41436.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH41436.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH41436.1, ECO:0000313|EnsemblPlants:KEH41436, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41436.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41436, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH41436.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41436.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH41436} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41436}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH41436.1; -; Genomic_DNA. DR RefSeq; XP_013467399.1; XM_013611945.1. DR EnsemblPlants; KEH41436; KEH41436; MTR_1g050845. DR GeneID; 25483273; -. DR Gramene; KEH41436; KEH41436; MTR_1g050845. DR KEGG; mtr:MTR_1g050845; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR Gene3D; 3.30.420.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001584; Integrase_cat-core. DR InterPro; IPR012337; RNaseH-like_dom. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF53098; SSF53098; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50994; INTEGRASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH41436.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 168 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 451 621 Integrase catalytic. FT {ECO:0000259|PROSITE:PS50994}. FT DNA_BIND 168 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 830 AA; 95437 MW; 7092D866119660D7 CRC64; MSLHHPKEFL KIVQHHELHN GELRVPKKFV EKYWKRIPNP VILRLPNGAQ KEIFWVERDG DIWFKRNWEN FAKSLKHGYA LVFKYLGGPY FKVKIFGHNT LEKDYSNIKF IDESCEGREE VVQEVQRRKN GKRKISQQKI TGSNKGGIIK KAKKCSTISE KENNENPSFE LEMSQTYAHG YTLRIPSDFS RTYLNENLKG SSGSIRFGEN MPMKVKVRFQ DIKNNRTCIV TSGWKPFAKK YNLQVGDKCK FVMTQLQPLS FTITITQAKG YEGMISCDDD IGKRIGIEGS SRSCHVLPNL EGSNVMKPIT IEIRVNSTYP YIGHEFFKRH KECHGEFVEL TNGGKSWLVK VKYYQSTGFR FYAGDEGKRQ ARVLIRRYNP MLIVLMETHC QFARVANFWQ GLGYVKCAIS KATGHAGELE LLEQFRDLSL VCEVSPQSVK LEMLKIDSEF MNSIKEAQKA DVKFVDLFIG GTQTEDSDFK VDDQGVLRFR GRICIPDDDE MRKMILEESH ISSLSIHPGA IKMYHDLKKL FWWSGLKRDV AQFKSLQEAL GSKLKLSSAY HPQTDGQSER TIQSLEDLLR VCVLEQGGTW DSHLPLIEFM YNNSYHSSIG MTPFEALYGR RCRTPLCWFE SGESVVLGPD IVQQTTEKVK LIQEKMKALQ SRQKSYHDKR RKDLEFQEGD HVFLRVTLVI GVGRALKSKK LTPRFIGPYQ ISERIGTVAY RYVSDPSHVI PRDDVQVRDN LTVETLPVRI EGREVKTLRG KEIPLVKVVW EGADGESLTW ELESKMLESY PELFTSCPGA FALYVGGLMP CEYNYTLYVE GSMPWLVPHG // ID A0A072VJJ6_MEDTR Unreviewed; 459 AA. AC A0A072VJJ6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_1g058210 {ECO:0000313|EMBL:KEH41962.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH41962.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH41962.1, ECO:0000313|EnsemblPlants:KEH41962, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41962.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41962, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH41962.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41962.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH41962} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41962}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH41962.1; -; Genomic_DNA. DR RefSeq; XP_013467925.1; XM_013612471.1. DR EnsemblPlants; KEH41962; KEH41962; MTR_1g058210. DR GeneID; 25483765; -. DR Gramene; KEH41962; KEH41962; MTR_1g058210. DR KEGG; mtr:MTR_1g058210; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 459 AA; 51299 MW; B531808B0859EE85 CRC64; MSPPQPRCVN PKIWQRCAGA GVIIPKLHSK VYYFPKGHLE HACTSPNDHT INIINRYRPS IPCIISTVDL LADPYTDEVF AKLLLTPVTD GFIQESPRDT DQEDKGDDNV VSFVKILTKS DSNNAIGFSV PRACADLILP KLEFEVPMRS QKIFVTDVQG EVWNYNHTYH GKPKRHVLNN GWTLFVNKKK LVAGDSVVFM KNLAGKVFVG IRRHMKFAAA EAAAVPKEKL TEKTVIKAAE LAEKSMAFEV VYYPSPNWND FVVDAKVVDE AIKINWESGM GVKLSLKNEE SLRMRYVQPQ GTISNALSNV PNWRMLQVNW DGHENLQNQN HVNPWQVQLI SKAPEMYLPF PTKRPRLAEG NNFLEDNSVE RLTTVSKELN TGGPACDDLS AHNHSSLNTV GTKFVETHNC NTQIASSGSI MLFGKIIQPV EGNFHDHGTK LEATTTRTNS AQQGLVANK // ID A0A072VKM7_MEDTR Unreviewed; 323 AA. AC A0A072VKM7; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH41968.1}; GN OrderedLocusNames=MTR_1g058350 {ECO:0000313|EMBL:KEH41968.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH41968.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH41968.1, ECO:0000313|EnsemblPlants:KEH41968, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41968.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41968, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH41968.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH41968.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH41968} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH41968}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH41968.1; -; Genomic_DNA. DR RefSeq; XP_013467931.1; XM_013612477.1. DR EnsemblPlants; KEH41968; KEH41968; MTR_1g058350. DR GeneID; 25483770; -. DR Gramene; KEH41968; KEH41968; MTR_1g058350. DR KEGG; mtr:MTR_1g058350; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH41968.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 37031 MW; A244BD8E9461E62A CRC64; MDLSETSLWW TQQHQQQQPM LLVEPTSWSL HHHQPPWFNS QIHENTPHYN LKNIEDEELD TTTTVVEPED EKESMFEKPL TPSDVGKLNR LVIPKQYAEK YFPLGGADSA ECKGLLLSFE DESGKCWRFR YSYWNSSQSY VLTKGWSRYV KDKRLDAGDV VLFERHRVDS QRLFINWRRR SGDDQSAYVS RGVGHHGKGS DGNGKNEVVN GVGWSRGFYS AHVPYPTHHH QVLPYQHDQC LHAGRGSQSQ NQRTKPVGNS SSSTSSSRVL RLFGVNMECQ PEHDSSTPQC SYDSNNNMPL TQGTIDTYQY HQPSNSNSHP HVV // ID A0A072VKS5_MEDTR Unreviewed; 689 AA. AC A0A072VKS5; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_1g064430 {ECO:0000313|EMBL:KEH42231.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH42231.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH42231.1, ECO:0000313|EnsemblPlants:KEH42231, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH42231.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH42231, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH42231.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH42231.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH42231} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH42231}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH42231.1; -; Genomic_DNA. DR RefSeq; XP_013468194.1; XM_013612740.1. DR EnsemblPlants; KEH42231; KEH42231; MTR_1g064430. DR GeneID; 25484001; -. DR Gramene; KEH42231; KEH42231; MTR_1g064430. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 689 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 689 AA; 76950 MW; AC283E788A9EEF41 CRC64; MNIFMDSRDN NNNNNSSEEV ERCLDPQLWH ACAGGMVQMP TVNSKVYYFP QGHAEHACGP VNFMNCPKVP PLIPCKVLSI KYMADPETDE VYAKLKLVPL SGNGNGNGND AADYDTVGGN ENQDKPVSFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY AADPPLQNIL AKDVHGETWK FRHIYRGTPR RHLLTTGWST FVNQKKLLAG DSIVFLRAEN GDLCVGIRRA KKGIGGGHED PLPLGWNPVG ENFPLPWFTQ NENQMGRNIN NNNGLNSGAN MTGREKVRPE AVLQAVTLAA NRQPFEVIYY PRASTPEFCV KAPLVEAAMQ IRWCSGIRFK MAFETEDSSR ISWFMGIVSG VQFVDPLLWP NSPWRLLQVK WDEPDLLQNV RRVSPWLVEL VANIPSINLS PFSQPRKKLR LSPHHDFPLD GQISVPSFPS NLLGQSNLFR CLPESTPAGM QGARHAHYGL PISDLHLSKV QAGLFPAGFV PFDHAAKLPS VSNNLMMQKS SMSENVSCLL SMASSTQSSK KFDDEKKPQL VLFGQKILTE QQISNDRSSD GNTNKMGNFS DGSGTPHHQQ VLQKRSSCES FQWHRDNHEE TEASLESTDH CKVFLESEDV GRTIDLSLLG SYDELYRKLA DMFGIEKYEK VSRVLYRDIS GAVKHIGEEP FSNFTRTARR LTILMDSSK // ID A0A072VMF9_MEDTR Unreviewed; 750 AA. AC A0A072VMF9; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39315.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39315.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39315.1, ECO:0000313|EnsemblPlants:KEH39315, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39315.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39315, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39315.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39315.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39315} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39315}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39315.1; -; Genomic_DNA. DR RefSeq; XP_013465280.1; XM_013609826.1. DR EnsemblPlants; KEH39315; KEH39315; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39315; KEH39315; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 168 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 682 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 168 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 750 AA; 83380 MW; 83362CB009A6D888 CRC64; MEIDLNDSIT EVKKNVCSNG KCEKSVCCVC TLSSSSSPTC SSSSSTSAIV SSSYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQVASLS LFSSLEIPTY GLQPQILCRV VNVQLLANKE NDEVYTQVAL LPQAELAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVGWKF RHIYRGQPRR HLLTTGWSIF VSQKNLVSGD AVLFLRGENG ELRLGIRRAA RPRNGLPESI IGNQSCSPSF LSSVANAISA KSMFHVFYSP RASHADFVVP YQKYAKSIRN PVTIGTRFKM KFEMDESPER RCSSGIVTGM SDLDPYKWPK SKWRCLMVRW DEDIGANHQD RVSPWEIDPS TSLPPLNIQS SRRLKKLRTG LHVESPSHFI TAGDSGFMDF DESIRSSKVL QGQEKTSFMS LYYGCDTVTK QKEFDINSLR HTNLASNGAR KITSSEFTRI QPSSYADFTE MNRFPRVLQA QEIYPLRSLT GKVDLNLNSW GKTNVSYTKY NLHNATKLNF HSLGSEVLQN SSFPYGDIHK VGQGSSMLCS KPTNFQLGNV SFNTPSSQIG ALRNEVGLSS FKIRNEQKLQ NDISAATSLD ANIRISNDEN FKEMVNPCKL FGFSLSAAAE TTSQNLQNSA KRSCTKVHKQ GSLVGRAIDL SRLSSYNDLV SELERLFGME GLLRDPDKGW RILYTDSEND IMVVGDDPWQ // ID A0A072VMG6_MEDTR Unreviewed; 620 AA. AC A0A072VMG6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:KEH39320.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39320.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39320.1, ECO:0000313|EnsemblPlants:KEH39320, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39320.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39320, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39320.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39320} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39320}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39320.1; -; Genomic_DNA. DR RefSeq; XP_013465285.1; XM_013609831.1. DR EnsemblPlants; KEH39320; KEH39320; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; KEH39320; KEH39320; MTR_2g093740. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 552 620 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 38 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 69488 MW; E30C9DEB1B86B6DC CRC64; MCCIQLAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVGWKF RHIYRGQPRR HLLTTGWSIF VSQKNLVSGD AVLFLRGENG ELRLGIRRAA RPRNGLPESI IGNQSCSPSF LSSVANAISA KSMFHVFYSP RASHADFVVP YQKYAKSIRN PVTIGTRFKM KFEMDESPER RCSSGIVTGM SDLDPYKWPK SKWRCLMVRW DEDIGANHQD RVSPWEIDPS TSLPPLNIQS SRRLKKLRTG LHVESPSHFI TAGDSGFMDF DESIRSSKVL QGQEKTSFMS LYYGCDTVTK QKEFDINSLR HTNLASNGAR KITSSEFTRI QPSSYADFTE MNRFPRVLQA QEIYPLRSLT GKVDLNLNSW GKTNVSYTKY NLHNATKLNF HSLGSEVLQN SSFPYGDIHK VGQGSSMLCS KPTNFQLGNV SFNTPSSQIG ALRNEVGLSS FKIRNEQKLQ NDISAATSLD ANIRISNDEN FKEMVNPCKL FGFSLSAAAE TTSQNLQNSA KRSCTKVHKQ GSLVGRAIDL SRLSSYNDLV SELERLFGME GLLRDPDKGW RILYTDSEND IMVVGDDPWQ // ID A0A072VN61_MEDTR Unreviewed; 356 AA. AC A0A072VN61; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:KEH39580.1}; GN OrderedLocusNames=MTR_2g102450 {ECO:0000313|EMBL:KEH39580.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH39580.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH39580.1, ECO:0000313|EnsemblPlants:KEH39580, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39580.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39580, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH39580.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH39580.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH39580} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH39580}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; KEH39580.1; -; Genomic_DNA. DR RefSeq; XP_013465545.1; XM_013610091.1. DR EnsemblPlants; KEH39580; KEH39580; MTR_2g102450. DR GeneID; 11431557; -. DR Gramene; KEH39580; KEH39580; MTR_2g102450. DR Proteomes; UP000002051; Chromosome 2. DR ExpressionAtlas; A0A072VN61; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH39580.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 356 AA; 40490 MW; 6776F28967E090CD CRC64; MAKGCSTTSN NYEAAREQRL VENKKRFEFG TDLPQLRRRA RSSSSWGSYA YAARPLDEIK VATAQERKRA WDAAEALQIN LQSSNPIFIK SMLRSHVYSC FWLGLPSRFC VEHLPKTDYT MVLEDEKGLE YDAVYLARKT GLSGGWRGFA LEHKLDDGDA VVFELVEAAR FKVYIVRAFE NIDEEEEKEE SDALVEDGNM CTSKTIKKSE TVKPKEATKK TRMQKVSKVP THEPKSETVK SEETSRTTRS SHKKQKISDV STAIEPKEDA HLETVKPEAA TKLPNKKRKA KEGDVSKKIL LEDNAKAMKT DSERKEEPVE DVDVELKKVK LDDKASKPAA EKPRKIRAPK FFRKRG // ID A0A072VPJ6_MEDTR Unreviewed; 381 AA. AC A0A072VPJ6; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:KEH40065.1}; GN OrderedLocusNames=MTR_1g021440 {ECO:0000313|EMBL:KEH40065.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40065.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH40065.1, ECO:0000313|EnsemblPlants:KEH40065, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40065.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40065, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH40065.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH40065.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH40065} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40065}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH40065.1; -; Genomic_DNA. DR RefSeq; XP_013466026.1; XM_013610572.1. DR EnsemblPlants; KEH40065; KEH40065; MTR_1g021440. DR GeneID; 11417208; -. DR Gramene; KEH40065; KEH40065; MTR_1g021440. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KEH40065.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 42985 MW; EE081103F2A5039B CRC64; MEVDGSRSWE EDIYWNNFQF IHFTQFLQTT DFQQQLALPK TFSDNLKKKL PENVTLKGPS GAVWDIGLTT RDNTVYFVGG WERFVKDHSL KENDFLVFKY NGESLFEVLI FDGDNFCEKA TSYFVRKCGH AQTEEGGSKV KNTNTSVEEV NTASNGGVDC GSPETFRVRR LDSIRTPLAV PVKTTDKMTL NAFFESASPK ELPVYFPKQP TGQRTKKPAN EVTPGQTKKR GRPPKEEAAQ SRLSSAKDEK KLAQSFTSTF PYFVKIIKTF NVDGPRILNV PHQFSIAHLP NGKIKIILRN LKGEQWTANS VPRSRVHTSH TLCGGWMSFV RANNIKLGDV CVFELINDCE LRVRVAEVDE DGLVSEVQKE GIDHQNGSCE T // ID A0A072VVW0_MEDTR Unreviewed; 702 AA. AC A0A072VVW0; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_1g064430 {ECO:0000313|EMBL:KEH42230.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH42230.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:KEH42230.1, ECO:0000313|EnsemblPlants:KEH42230, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH42230.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH42230, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:KEH42230.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH42230.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:KEH42230} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH42230}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; KEH42230.1; -; Genomic_DNA. DR RefSeq; XP_013468193.1; XM_013612739.1. DR EnsemblPlants; KEH42230; KEH42230; MTR_1g064430. DR GeneID; 25484001; -. DR Gramene; KEH42230; KEH42230; MTR_1g064430. DR KEGG; mtr:MTR_1g064430; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 621 702 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 702 AA; 78528 MW; EC87FA815B1CDD94 CRC64; MTFQKFCSES FLKMNIFMDS RDNNNNNNSS EEVERCLDPQ LWHACAGGMV QMPTVNSKVY YFPQGHAEHA CGPVNFMNCP KVPPLIPCKV LSIKYMADPE TDEVYAKLKL VPLSGNGNGN GNDAADYDTV GGNENQDKPV SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYAADPPLQ NILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL LAGDSIVFLR AENGDLCVGI RRAKKGIGGG HEDPLPLGWN PVGENFPLPW FTQNENQMGR NINNNNGLNS GANMTGREKV RPEAVLQAVT LAANRQPFEV IYYPRASTPE FCVKAPLVEA AMQIRWCSGI RFKMAFETED SSRISWFMGI VSGVQFVDPL LWPNSPWRLL QVKWDEPDLL QNVRRVSPWL VELVANIPSI NLSPFSQPRK KLRLSPHHDF PLDGQISVPS FPSNLLGQSN LFRCLPESTP AGMQGARHAH YGLPISDLHL SKVQAGLFPA GFVPFDHAAK LPSVSNNLMM QKSSMSENVS CLLSMASSTQ SSKKFDDEKK PQLVLFGQKI LTEQQISNDR SSDGNTNKMG NFSDGSGTPH HQQVLQKRSS CESFQWHRDN HEETEASLES TDHCKVFLES EDVGRTIDLS LLGSYDELYR KLADMFGIEK YEKVSRVLYR DISGAVKHIG EEPFSNFTRT ARRLTILMDS SK // ID A0A077RES4_WHEAT Unreviewed; 273 AA. AC A0A077RES4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDJ26270.1}; GN ORFNames=TRAES_3BF003300050CFD_c1 {ECO:0000313|EMBL:CDM84239.1}, GN TRAES_3BF006500040CFD_c1 {ECO:0000313|EMBL:CDJ26270.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDJ26270.1}; RN [1] {ECO:0000313|EMBL:CDJ26270.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CBUC010000013; CDJ26270.1; -; Genomic_DNA. DR EMBL; HG670306; CDM84239.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 214 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 29320 MW; 867C832F7363FFFF CRC64; MEGDAVLRQK FFKILLPGSF ESSLSLPPKF AARLDRPPVL AVATLRDPTG RSWHVGLVRH GAAGLRFDGR GWRSFVAGCG LSAGQLLVFD HLGDLDFAVE PFDTSGCSSY FDGERGSTTN IDDDDAAPDV EESGSDNHHH GRSPSRSSLP ATTGTKRRKK LSPANASPAG SCGQSSSDDG ALRLGIEQPF HLQYMELTKT FCARVGWAES CTAELSVAGR GDRRWEVSVR VGSKGGMIMA GWEGFAWDNG LRISDVCVFR PADTGDQVVQ AKC // ID A0A077RF81_WHEAT Unreviewed; 698 AA. AC A0A077RF81; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRAES_3BF097400050CFD_c1 {ECO:0000313|EMBL:CDJ26448.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDJ26448.1}; RN [1] {ECO:0000313|EMBL:CDJ26448.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:CDJ26448.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CBUC010000157; CDJ26448.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 77148 MW; A91E188C404EB0B4 CRC64; MIGIDLNTVE EDEEEGGPSA EPPRGTVCLE LWHACAGRVG SLPRKGSAVV YLPEGHLEHI GEAAGAVPPH VFCRVVDVNL QADPAMDEVY AQVSLVVDDE EAKRRMRPGE SEEACEGDSE DTDAAKRRAR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNLQR PSQELVTKDL HGTEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRDEDGVLR LGVRRAAQLK NVSPFPALFN QDSSLSSLGN VAHAVAVKNI FHIYYNPRLC ESEFIVPYWK FMRSFSEPFS VGMRFKMKYE NEDASERRST GIITGSRESD LKSHGSKWKC LVVRWDDDVE CRWPNRVSPW EIELTGSVSG SHLSSPHSKR LKPCLPQVNP DMLLPSGSVS SDFAESARFH KVLQGQELLG SKTHDGTANS ASRASEARNF QYSDDRNCSI NMSNIPGVPE LGARTPPENH GFSYHCSGFG ESQRFQRVLQ GQEVFHPYEG GTLSDAVIRG SSFCQPDGNC TSGATYKWLT SQGCDYSGPV TLAMPQASSP LSVLMFPQTS SKIHGFEYVC RSLDKDDNIR HVTVNATQDM GRTSHALPLW PHLVSGKAIA SCTGTKKLHS ISSAEHEPND KDVHTNGCKI FGISLTQKVR VCNEVECSSA NCDFQPLKPQ MSKSLGNNCA TVSSSCILFW QLLDAIAY // ID A0A077RF86_WHEAT Unreviewed; 351 AA. AC A0A077RF86; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDJ26459.1}; GN ORFNames=TRAES_3BF108500010CFD_c1 {ECO:0000313|EMBL:CDJ26459.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDJ26459.1}; RN [1] {ECO:0000313|EMBL:CDJ26459.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:CDJ26459.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CBUC010000178; CDJ26459.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 38194 MW; AF8C57E5080B1787 CRC64; MGVEILSSMV EDSSQYSSGA STATTESGTT GRAPTALSLP VAIADESVTS AQSAPSRFKG VVPQPNGRWG SQIYERHARV WLGTFPDQDL AARAYDVAAL RYRGRDAATN FPCAAAEAEL AFLGAHSKAE IVDMLRKHTY ADELRQGLRR GRGMGARAQP TPSWAREPLF EKAVTPSDVG KLNRLVVPKQ HAEKHFPLKR TPERTTTTGN GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLAAGDSIIF SCSAYGQEKQ LFIDCKKNTT VNSGKSASPL PVVETAKGEQ VRVVRLFGVD IAGVKRGRAA TAEQGPPELL KRQCVPLPHG QRSPALGAFV L // ID A0A077RPS8_WHEAT Unreviewed; 320 AA. AC A0A077RPS8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM81001.1, ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_226362_AA0816220.1}; GN ORFNames=TRAES_3BF062700040CFD_c1 {ECO:0000313|EMBL:CDM81001.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM81001.1}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_226362_AA0816220.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_226362_AA0816220.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EMBL:CDM81001.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). RN [3] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_226362_AA0816220.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM81001.1; -; Genomic_DNA. DR EnsemblPlants; TRIAE_CS42_3B_TGACv1_226362_AA0816220.1; TRIAE_CS42_3B_TGACv1_226362_AA0816220.1; TRIAE_CS42_3B_TGACv1_226362_AA0816220. DR Gramene; TRIAE_CS42_3B_TGACv1_226362_AA0816220.1; TRIAE_CS42_3B_TGACv1_226362_AA0816220.1; TRIAE_CS42_3B_TGACv1_226362_AA0816220. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 103 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 103 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 34816 MW; 096414C2D539082F CRC64; MASGKPTNHG MEDDNDMEYS SAESGAEDAA EPSSSPVLAP PRAAPSSRFK GVVPQPNGRW GAQIYEKHSR VWLGTFPDED AAVRAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEL DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV GKLNRLVVPK QQAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA ISDENETGHV AVKLFGVDIA GGGMAGSSGG // ID A0A077RPT1_WHEAT Unreviewed; 351 AA. AC A0A077RPT1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM81004.1}; GN ORFNames=TRAES_3BF098200010CFD_c1 {ECO:0000313|EMBL:CDM81004.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM81004.1}; RN [1] {ECO:0000313|EMBL:CDM81004.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM81004.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 38210 MW; ABC27189032B50EB CRC64; MGVEILSSMV EDSSQYSSGA STATTESGTT GRALTALSLP VAIADESVTS AQSAPSRFKG VVPQPNGRWG SQIYERHARV WLGTFPDQDL AARAYDVAAL RYRGRDAATN FPCAAAEAEL AFLGAHSKAE IVDMLRKHTY ADELRQGLRR GRGMGARAQP TPSWAREPLF EKAVTPSDVG KLNRLVVPKQ HAEKHFPLKR TPERTTTTGN GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLAAGDSIIF SCSAYGQEKQ LFIDCKKNTT VNSGKSASPL PVVETAKGEQ VRVVRLFGVD IAGVKRGRAA TAEQGPPELL KRQCVPLPHG QRSPALGAFV L // ID A0A077RQW7_WHEAT Unreviewed; 574 AA. AC A0A077RQW7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM82036.1}; GN ORFNames=TRAES_3BF171300020CFD_c1 {ECO:0000313|EMBL:CDM82036.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM82036.1}; RN [1] {ECO:0000313|EMBL:CDM82036.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM82036.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 261 362 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 513 569 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 261 362 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 513 569 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 574 AA; 63964 MW; 16685591CA81A4D0 CRC64; MAGLASQMKR SCDCCKRYAD HLDGRMKCFC RRMTANFRHG MAIPNKFIDH FGGKISRTIE LESHNGSMYT VEVSKLMNET VLRRRGWEAF VNAHSIEEND SLLFPHIEKS LFEVLVLDSD DCEKVLPSAG IKVASCNVQE SSSVDYIDIS SSVGYIDISS SSGDDTTRSP GSKRFATCER GDSSHPRKTA VNDSSSEEDS GEDSDAKAEE HSEDESSFGL DDVRQTPCTG RDYVLSLNAR LSGAQEERVT RLLQAVRAKT PVFVAIMKMN TRIHTTVIPK LFAEEHFPRE SQNLTLQRPG KSKKWHPWFY IRKSQCGHVL TGSRWVGFLR DNGVQEGDLC VFQPVKGTGT RSKFTVHLLH EPLGANGSTG PKKRVGNTRV NSAAPERSTT AHGHGATTMA KAAPHPDAPT TLRVNKEQDD GCNHGRQQAR QHPKPARPYV LSSTARLTEE QEREVDRTAR AIGSWVPAYV SVMNRSSVGV GNRIYNVSIS CAYAAEYLPP GERVAVTLVR RKKAWEVEMR ARGGGRALAH GWRGFARDNR LRVQDVCLFQ PMEKNHESLT MTVHIVRHSG KRKQ // ID A0A077RRL7_WHEAT Unreviewed; 480 AA. AC A0A077RRL7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM82532.1}; GN ORFNames=TRAES_3BF020500020CFD_c1 {ECO:0000313|EMBL:CDM82532.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM82532.1}; RN [1] {ECO:0000313|EMBL:CDM82532.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM82532.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 213 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT COILED 437 464 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 480 AA; 53431 MW; 965A19749C7A5828 CRC64; MVMEQKMALV HRRLALLDRE SDKEADVAPT ATMVRSFSLS STQIVGHCRF WLVGFQKKRG RLVNTKNDME QKLNMSTPGL ALVESGGSNS SKSDVDDDLV PMVRTVGNFG SAMERAEEVL VKLPAEHPSF VKHMLHSHVV HGFWLGLPSD FCNKHLPKKD TAIVLEDEDG HNYDAKYLGA KQGLSAGWRG FAINHDIKVY ILRANNYTTT DGAIGLLCLE AGKEKIPKEE SSNDVKSDAG KEKIPKEESS NDVKSEAGKE KIPKEESSND VKSEKKPKVA WSDSSNLASE SITDGIKFSD TAIDFDDVND FSSFSIVYDG LVIDCEFPDH LRKTYYELCC AQKSFLHKEL LKGLNLTLVV GAIMETIDIA EGIRACKARA PSCKHFVVWK KNLQALKLLG MNVDFLLKRV DDLLSLPAPP RVPAEVKLER AHTVAKIKEV ESRISSVKDT LEEIDMEMEE MESSAKMVDE MMQLLATAPW // ID A0A077RTE2_WHEAT Unreviewed; 787 AA. AC A0A077RTE2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM83514.1}; GN ORFNames=TRAES_3BF072800060CFD_c1 {ECO:0000313|EMBL:CDM83514.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM83514.1}; RN [1] {ECO:0000313|EMBL:CDM83514.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM83514.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 229 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 477 580 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 717 785 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 229 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 477 580 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 717 785 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 787 AA; 89035 MW; A1C1BEE15E1DE936 CRC64; MKKSNVKRHA TLIIHKDYAL EHFPCEDTTA VLQLPGKNKD WKCTFRIRPS GTSDAGRRNL FLYNFACDNH IREGDICLFQ PMTNVKQRRF IVTVHVLDKV NIDHSPGRRT DIGSNHGRKR AKMGAVKDKP HTDEHEVSED SEGAFGRLFM LSDKACPTPA QRKKLLKKVK KIKFKPPFYV AIMSKSTVCQ RGSQNNPMLR FGSQYATRYL VEKFAGGHPC GKRRGVELVL LREGKSRSWC TKLRHSSRGS RVLKGWPSFA RDNKLREGDL CLFKLLKSEE LLDVSKMSNP CECCERKIRF IRKINGNFMH SLVLPDWFVS QLGGKIWRTI KLQAPDGIIY DVGVSENMNR IILKFGWAAF LDANEIEENY SLMFRYLGNA LFEVTIFDSN GKEKALCSRY ADNSSSSQDG VTQSSAGEGS DSGGSQKESL YCYKKSAKMP AVSYSSEEFS GRCYLTEAQK AKVLALVKKI RPEIPVLVVQ MKKSNVEQSG TLVLCKDYAR KHLPCEGTNI ILQLPRKNKG WKCKFHIRPS GTSDAGRRNL SLGNFVPDNH IREGDICLFE PMTIVKEKRF TMTVHLLHKA GIDHSPSART GVGSNHGRTS TKMAGAMEEP PTDGEEYSWE HEEHGVSDDS EGGSEPRFML ADKASLTRAQ EKKVLEKVEE IESEVPLYVA IMSKSNVYRG GGGNTPTLHF GYQYTGRYLV QKSASGHHRG KSSQVSLVLH REGRSGSWPT KMQHSMQHTT HAMRILKGWT FFARDNRLRE GDLCLFKLIT NKEPLTMVIH IIRRKEC // ID A0A077RU24_WHEAT Unreviewed; 388 AA. AC A0A077RU24; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM84156.1, ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_224637_AA0799230.1}; GN ORFNames=TRAES_3BF016200040CFD_c1 {ECO:0000313|EMBL:CDM84156.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM84156.1}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_224637_AA0799230.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_224637_AA0799230.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EMBL:CDM84156.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). RN [3] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_224637_AA0799230.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM84156.1; -; Genomic_DNA. DR EnsemblPlants; TRIAE_CS42_3B_TGACv1_224637_AA0799230.1; TRIAE_CS42_3B_TGACv1_224637_AA0799230.1; TRIAE_CS42_3B_TGACv1_224637_AA0799230. DR EnsemblPlants; TRIAE_CS42_3B_TGACv1_224637_AA0799230.2; TRIAE_CS42_3B_TGACv1_224637_AA0799230.2; TRIAE_CS42_3B_TGACv1_224637_AA0799230. DR Gramene; TRIAE_CS42_3B_TGACv1_224637_AA0799230.1; TRIAE_CS42_3B_TGACv1_224637_AA0799230.1; TRIAE_CS42_3B_TGACv1_224637_AA0799230. DR Gramene; TRIAE_CS42_3B_TGACv1_224637_AA0799230.2; TRIAE_CS42_3B_TGACv1_224637_AA0799230.2; TRIAE_CS42_3B_TGACv1_224637_AA0799230. DR OMA; IEHESSE; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 284 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 284 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 388 AA; 43066 MW; CCF083FC17C9A6DA CRC64; MPDTERQSPW ASVERRPHFF KVLIGDFKKR LKIPPKFCKH IPWEASRKAK GLKEASMAAT LEGPSGRTWQ VVIRRTAEGT FFTAGWAKFV QDQALRELEF LVFRHDGGTS FAAMVFDKSA CEREDLLLAG DAPRPRRKRG RPRTASRAVD DSAGMELVPY RAPAEQLPQV ACSDRMPESD KSNGSAGHPG PMKAEAGAGE LPLCLIAPPP SESGQLPPGR LPAGTKDGCA VKTRSIHVDL AAASIPPSVR KYNGYVSRRR PVASAERQRA MELARAFRSS LPYCVIRMST MHVYYSFMMR FPTGFSRQHL PREKTEMVLR DPGGKAWAAL YIPGTRDRLS RGWCAFARGN CLEEGDCCVF ELVGAAEFRV HVFRVVEPAV PAVRLRLA // ID A0A077RV16_WHEAT Unreviewed; 741 AA. AC A0A077RV16; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM84192.1}; GN ORFNames=TRAES_3BF048900180CFD_c1 {ECO:0000313|EMBL:CDM84192.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM84192.1}; RN [1] {ECO:0000313|EMBL:CDM84192.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM84192.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 741 AA; 84709 MW; BD75C5F1F12E8B93 CRC64; MEEDEEGRPR FFKVLVGDFA RRLEIPRDFL GYIPEVGLRG SNISPVQAML KRPEGKTWVV ELEKVDRCVF LTTGWPKFVV DNSLREYEFL LFRHDKKMDF MVSIFGRNAC EKAVRSSGSA TESLERILPT CKRGHSGDEL TKTTNNLRQS HSLVMVPDQS DTKIFPFQGS TQGNGHISPQ SFADIHLHEV DGLKDELKIY LLLKVPMDDD KAKVIAEVMS RLHVDRATVD LFCATLCLYK WDSDAAAEVL NTCRGKPQIP NQFLKQKLVL QLDFIKRELR HFFPTGDDCP PQICDSRESS LEEPNLSTQA LQIYLPAVKS KLVDDHELCD LSYKQKRRIV KSRSQQISET PRRSPRLAHL KNSGGSIDSG LKEKPEVLES SPSSRIDQVE HRAGHACLLY EKPEHVLKGD RQHAIGSLSQ DFKRLKRTRG EVSLSKKPQH NQENEEKIDQ GNNGEIFEEQ VDRNAAESSE LFMGRDWIDS SPPTKSKLSS MIINELSLTW KPSVHTNSLE TVLLHIQRDN FMKTITHVQG IICSSPSDLH CAAIIEAVVQ KEILKWDSCL QDVDAQRVVI ALLEHAKKIK EIHNFNMESR KEEFSTKLQD QLKWQLKELE SACTSLEFDY KKVTCDGNIA VSTSQEQKKK LHALQDEIKG LQQSMMMEDE IQKLVHQVAE HESLVQKSLM ERVRVKTVLK SYKQVLAEVK ERLASDELRL IDVDALVKVE MDNLRKEIEI SKGRLLNIIF K // ID A0A077RVL3_WHEAT Unreviewed; 480 AA. AC A0A077RVL3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 12-APR-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM82531.1}; GN ORFNames=TRAES_3BF020500010CFD_c1 {ECO:0000313|EMBL:CDM82531.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM82531.1}; RN [1] {ECO:0000313|EMBL:CDM82531.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM82531.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 213 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT COILED 437 464 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 480 AA; 53447 MW; 4F53943195FB9561 CRC64; MVMEQKMALV HRRLALLDRE SDKEADVAPT ATMVRSFSLS STQIVGHCRF WLVGFQKKRG RLVNTKNDME QKLNMSTPGL ALVESGGSNS SKSDVDDDLV PMVRTVGNFG SAMERAEEVL VKLPAEHPSF VKHMLHSHVV HGFWLGLPSD FCNKHLPKKD TAIVLEDEDG HNYDAKYLGA KQGLSAGWRG FAINHDIKVY ILRANNYTTT DGAIGLLCLE AGKEKIPKEE SSNDVKSDAG KEKIPKEESS NDVKSEAGKE KILKEESSND VKSEKKPKVA WSDSSNLASE SITDGIKFSD TAIDFDDVND FSSFSIVYDG LVIDCEFPDH LRKTYYELCC AQKSFLHKEL LKGLNLTLVV GAIMETIDIA EGIRACKARA PSCKHFVVWK KNLQALKLLG MNVDFLLKRV DDLLSLPAPP RVPAEVKLER AHTVAKIKEV ESRISSVKDT LEEIDMEMEE MESSAKMVDE MMQLLATAPW // ID A0A077RXN9_WHEAT Unreviewed; 320 AA. AC A0A077RXN9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM83359.1}; GN ORFNames=TRAES_3BF062600010CFD_c1 {ECO:0000313|EMBL:CDM83359.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM83359.1}; RN [1] {ECO:0000313|EMBL:CDM83359.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM83359.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 103 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 103 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 34788 MW; E04EA219B88B6279 CRC64; MASGKPTNHG MEDDNDMEYS SAESGAEDAA EPSSSPVLAP PRAAPSSRFK GVVPQPNGRW GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEL DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV GKLNRLVVPK QQAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA ISDENETGHV AVKLFGVDIA GGGMAGSSGG // ID A0A077S0E5_WHEAT Unreviewed; 330 AA. AC A0A077S0E5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM86169.1}; GN ORFNames=TRAES_3BF054400110CFD_c1 {ECO:0000313|EMBL:CDM86169.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM86169.1}; RN [1] {ECO:0000313|EMBL:CDM86169.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM86169.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 38381 MW; DE943F94C1552619 CRC64; MSKPWKKRKE LDEHRYWNHP DEQDKHFFKV MIGDFHEKMV IPDRFVQHFR WQTGRTIKLA SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HDLRTGDFLV FKYDGHSQLK VLIFGPSGCE KIQACNLKKN AAPGKEWWGN TAGFVNTCHD LPMKFPHSGR QIRPSKDTSR QGNDIINVSS SSSASDSAED DHSLPGCILA NGTLLNLNEV QKKQLKEKLR AINSEIPIYG CVIRKSSIYG ATRSLDISRK YAEVYLPFKE QMLTLQRHGK KWEVRCRVKK NKNKRLMRGW KHFARGNNLT LGDACLFELL RNKKKYVMNV HIIHKSLYKR // ID A0A077S1M2_WHEAT Unreviewed; 123 AA. AC A0A077S1M2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM84940.1}; GN ORFNames=TRAES_3BF002300110CFD_c1 {ECO:0000313|EMBL:CDM84940.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM84940.1}; RN [1] {ECO:0000313|EMBL:CDM84940.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM84940.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 123 AA; 13982 MW; 7CEFA0D0A82B4666 CRC64; MAQQLRDSPD LAGFEFYKLM ASGTSWEKLN VPVEFSQSHG FTEKGRVVLR MRGQQWSVCL KHSNRRKGNA RTRTALRYGW NRFRVDNGLH VGDICFFQLV HDAGGDDPVL SVEVRKADGT IVQ // ID A0A077S2P9_WHEAT Unreviewed; 302 AA. AC A0A077S2P9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM83789.1}; GN ORFNames=TRAES_3BF111700070CFD_c1 {ECO:0000313|EMBL:CDM83789.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM83789.1}; RN [1] {ECO:0000313|EMBL:CDM83789.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM83789.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 33827 MW; 08648E7D3B5B2FE4 CRC64; MAAISSSSSS SKRRSPSAST TSSSSGDGIG EYRPQLVTRK RRSGGRGPRG GVRWMPAIRP VNELDLNRVA LDPNHQVAGL RVILQKELRN SDISQLGRIV LPKKESEAYL PILTSKDGRS LRMHDLLNAQ LWTFKYRYWP NNKSRMYVLE NTGDYVRTHN LRVGDFIMIY KDDDKNRFVI RAKKAGDDLV ASLPQFHEHI SSILPIPEVD DYVSLIPPPA DISAFVPQAD ENYEMFDGIF NSLPEIPVAN VRYSDFFDPF SDCMDMSNPG LNANNSANLG SHFHDERTGL SLFPNPTSGP LM // ID A0A077S4Z0_WHEAT Unreviewed; 95 AA. AC A0A077S4Z0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM84810.1}; GN ORFNames=TRAES_3BF032700040CFD_c1 {ECO:0000313|EMBL:CDM84810.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM84810.1}; RN [1] {ECO:0000313|EMBL:CDM84810.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM84810.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 76 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 76 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 95 AA; 10718 MW; FE1C07F490185E4C CRC64; MPLDFTKNLV AVPTEFNMRN NIGCSWRVTV KLMNGRVTLD RGWATYAAVH QIKIGYMVTF KLLTPDTLKV IIFNDDGIEV VNKCGKHDEA FAAKD // ID A0A077S608_WHEAT Unreviewed; 123 AA. AC A0A077S608; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM85213.1}; GN ORFNames=TRAES_3BF043700270CFD_c1 {ECO:0000313|EMBL:CDM85213.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM85213.1}; RN [1] {ECO:0000313|EMBL:CDM85213.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM85213.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 123 AA; 13998 MW; 914DDB98F277B85E CRC64; MAQQLRDSPD LAGFQFYKLM AAGTSWEKLN VPVEFSQSHG FTEKGRVVLR MRGQQWTVCL KHSNRRKGNA RTRTALRYGW NRFRVDNGLR VGDICFFQLV HDAGGDDPVL SVEVRKADGT IVQ // ID A0A077S779_WHEAT Unreviewed; 796 AA. AC A0A077S779; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRAES_3BF001100080CFD_c1 {ECO:0000313|EMBL:CDM85878.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM85878.1}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_224879_AA0802650.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_224879_AA0802650.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EMBL:CDM85878.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). RN [3] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_224879_AA0802650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM85878.1; -; Genomic_DNA. DR EnsemblPlants; TRIAE_CS42_3B_TGACv1_224879_AA0802650.1; TRIAE_CS42_3B_TGACv1_224879_AA0802650.1; TRIAE_CS42_3B_TGACv1_224879_AA0802650. DR Gramene; TRIAE_CS42_3B_TGACv1_224879_AA0802650.1; TRIAE_CS42_3B_TGACv1_224879_AA0802650.1; TRIAE_CS42_3B_TGACv1_224879_AA0802650. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 675 768 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 796 AA; 89099 MW; 7C7ED18B75CBC0C2 CRC64; MPPAAMAPPQ APSAGDPLYD ELWHACAGPL VTVPRVGDLV FYFPQGHIEQ VEASMNQVAG NQMRLYDLPS KLLCRVINVE LKAEADTDEV YAQVMLMPEP EQNEMAVDKS TSTTGATPPR PAVRSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMTQS PPTQELVAKD LHGMDWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRAMRQ LPNVPSSVIS SHSMHLGVLA TAWHAINTKS MFTVYYKPRT SPSEFIIPYD QYMESVKNNY SIGMRFRMRF EGEEAPEQRF TGTIVGSENL DQLWPESNWR SLKVRWDEPS TIPRPDRVSP WKIEPASSPP VNPLPLSRVK RPRPNVPPVS PESSVLTKEG ATKIDMDSAQ AQQRNQNNMV LQGQEHMTLR TNNLTASNDS DATVQKPMMW SPSPNIGKNH ASAFQQRPSM DNWMQLGRCD ASSGAQSFGD SQGFFMQTFD EAPNRHGSFK NQFQDHSSAR HFSDPYTKMQ TEANEFHFWN SQSTVYGNPR DQSQGFRFEE HPSNWLRQQQ FSPVEQPRVI RPHASIAPVD LEKAREGSGF KIFGFKVDTT STPSNHLSSS MAAIHEPVLQ IQASASLTQL QHTHADCIPE LSVSTAGTTE NEKSIQQAPH SSKDVQSKSH GASTRSCTKV HKQGVALGRS VDLSKFGDYD ELTAELDRMF EFDGELMSSN KDWQIVYTDP EGDMMLVGDD PWEEFCNIVR KIFIYTKEEV QKMNSKSSAP RKEEGSGDAD GANEKAHLAT SSHLDN // ID A0A077S7D4_WHEAT Unreviewed; 334 AA. AC A0A077S7D4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM86170.1}; GN ORFNames=TRAES_3BF054400100CFD_c1 {ECO:0000313|EMBL:CDM86170.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM86170.1}; RN [1] {ECO:0000313|EMBL:CDM86170.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM86170.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 38414 MW; F82D6F7C5ED3AE2E CRC64; MSKPWKKRKE LDEHRYWNHT EEQDKRFFKV MIGDFHERMI IPDRFAQHFR GQIGQTIKLA SRHGYTFDVQ ITKNLEKLVL DSGWKAFAKA HNLRTGDFLV FKYDGHSQLK VLIFGPSGCE KTCNLKKNAA PGKEWWGNTA GMVNTCHDLP MKFPHSGRKI KPSTDSSRQG NDIINVSSSS SASDSAGGVS SSEDDHSLSS CILAKGTLLN LNHVQKKQLE EKIRAINSEI PIYGCVISKS SIYGKTRTLG ISRKYAEVYL PFVEQMVTLQ HHGKKWEVRC CVKNRKSKRL MRGWMHFVRG NNLQLGDVCL FELLRNKKKY VMNVHIIRKS LYKR // ID A0A077S7P8_WHEAT Unreviewed; 95 AA. AC A0A077S7P8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM86129.1}; GN ORFNames=TRAES_3BF042800070CFD_c1 {ECO:0000313|EMBL:CDM86129.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM86129.1}; RN [1] {ECO:0000313|EMBL:CDM86129.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM86129.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 76 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 76 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 95 AA; 10904 MW; 5CB39FE004B37F04 CRC64; MPLDFTKHFV AVPTEFKLRN NTDCSWKVTV KLMNGRLTLD QGWATYVAVH QIKIGYMVTF KLLTPDTLRV IIFDDDDIEV VNKCGKHDEA FAAKE // ID A0A077S7T8_WHEAT Unreviewed; 235 AA. AC A0A077S7T8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM86161.1}; GN ORFNames=TRAES_3BF054400190CFD_c1 {ECO:0000313|EMBL:CDM86161.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM86161.1}; RN [1] {ECO:0000313|EMBL:CDM86161.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM86161.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 135 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 135 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 235 AA; 28033 MW; E4D6A65F11083E96 CRC64; MSKPWKKRKE LDEHRYWNHT GEQDKHFFKV MIGDFHERMV IPDRFVQHFR GQTGRTIKLA SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HNLRTGDFLV FKYDGHSQLK VLIFGPSGCE KIQACNLKKN AAPGKDWLAT PVNSYRYAFH EISRKYAEVY LPFEEQMLTL QHHGKKWEVR CRVKKSKAKR LLRGWKHFAR DNNLQLGDVC LFELLRNKKK YVMNVHIIRK SLYKR // ID A0A078BUH0_BRANA Unreviewed; 285 AA. AC A0A078BUH0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaA07g19120D protein {ECO:0000313|EMBL:CDX67872.1}; GN Name=BnaA07g19120D {ECO:0000313|EMBL:CDX67872.1}; GN ORFNames=GSBRNA2T00099072001 {ECO:0000313|EMBL:CDX67872.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX67872.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX67872.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031787; CDX67872.1; -; Genomic_DNA. DR RefSeq; XP_013648492.1; XM_013793038.1. DR EnsemblPlants; CDX67872; CDX67872; GSBRNA2T00099072001. DR GeneID; 106353302; -. DR Gramene; CDX67872; CDX67872; GSBRNA2T00099072001. DR KEGG; bna:106353302; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32255 MW; 5859532396413487 CRC64; MNQEEENPVE KASSMEREHM FEKVVTPSDV GKLNRLVIPK QHAERYFPLD NNSDSSKGLL LNFEDRTGNS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRD PGNKDKLFID WRRRPKIPDH HHQFAGAMFP RFYSFSHPQN LYHRYQQDLG IGYYVSSMER NDPPAVIESV PLIMQRRAAH VAAIPSSRGE KRLRLFGVDM ECGGGGGSVN STEEESSSSG GGGVSMASVG SLLQLRLVSS DDESLVAMEA ASVDEDHHLL TKKGKSSLSF DLDRR // ID A0A078BV28_BRANA Unreviewed; 617 AA. AC A0A078BV28; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC01g08330D {ECO:0000313|EMBL:CDX68620.1}; GN ORFNames=GSBRNA2T00130264001 {ECO:0000313|EMBL:CDX68620.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX68620.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX68620.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031789; CDX68620.1; -; Genomic_DNA. DR EnsemblPlants; CDX68620; CDX68620; GSBRNA2T00130264001. DR Gramene; CDX68620; CDX68620; GSBRNA2T00130264001. DR OMA; NDHEYRE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 531 611 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 617 AA; 68183 MW; CC07DA27464BC308 CRC64; MINVMNPMRS GSEKGLDPQL WHACGGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLKLIP LKDNDHEYRE GEDSNGLESN NSEKTPSFAK TLTQSDANNG GGFSVPRYCA EMIFPRLDYN AEPPVQTILA KDVHGEVWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD SIVFMRAENG DLCVGIRRAK RGGIGNNGVE KGKVTAESVV EAASLAISGR AFEVVYYPRA SSSEFCVKAL DARAAMRIPW CSGMRFKMAF ETEDSSRISW FMGTVSAVSV SDPVRWPNSP WRLLQVAWDE PDLLQNVKRV NPWLVELVSN VHPIVPSFSP PRKKMRLPQH SDYNARISVP SFASNPLIRS SPLSSVLDNV PVGLQGARHN AHQYYGLSSS DLHHYYLNRP HPPPPPPTLT VPPPLGFRNI DSKNEKGFCF LTMGTTPCND TESKKSHIVL FGKLILPEEQ KGSEKTQISS GGSNQNCVGG SSSDEGSPCS NKAHDGLGLE TGHCKVFMES DDVGRTLDLS VLGSYEELGV KLSDMFGIQK SEMLSSVLYR DASGAVKYPG NEPFSEFLKT ARRLTILSEQ GSESVVV // ID A0A078BVB3_BRANA Unreviewed; 409 AA. AC A0A078BVB3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=BnaC01g06820D protein {ECO:0000313|EMBL:CDX68771.1}; GN Name=BnaC01g06820D {ECO:0000313|EMBL:CDX68771.1}; GN ORFNames=GSBRNA2T00130478001 {ECO:0000313|EMBL:CDX68771.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX68771.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX68771.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031789; CDX68771.1; -; Genomic_DNA. DR EnsemblPlants; CDX68771; CDX68771; GSBRNA2T00130478001. DR Gramene; CDX68771; CDX68771; GSBRNA2T00130478001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 141 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 46282 MW; BF499CF90B966E57 CRC64; MEKASLLTPA NPHFFQPLLT GFQSHLNIPV TFFSKHIEGK HEGKTVELRS DSSDRTWKVK MEGHRLTDGW KEFAKAHDLR IYDVVIFRQE GDMLFHVTAF GTSCCEIQYA PSGIHVKVKE ESEEIGESSR REKESSSKPT CFSQYVTASN LSRGAVGVPL DFARRNGLNK GRRVIALRNQ EGKSWESKLK STRSGQVFIC RNWRSFCTAS KLKIGDSFQF KLLENTETPV FQLCSLSKVK RKKETLSESE EDNVVDKTET PRFVKITTTA SSLEIGKQNI PVHFTRANKL NKPGKIVLVD KDKVEWSMKL NQDSRSGTMY IMGGTAWKSF CAANEVVVGE SLTLELIRRE RILLLKFCSK MEQPPFKTKA RERKRARAKS SSIQGFESES IVSTLSTSVQ HSEGLGKVR // ID A0A078BW77_BRANA Unreviewed; 545 AA. AC A0A078BW77; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA07g20790D {ECO:0000313|EMBL:CDX68039.1}; GN ORFNames=GSBRNA2T00099262001 {ECO:0000313|EMBL:CDX68039.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX68039.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX68039.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031787; CDX68039.1; -; Genomic_DNA. DR EnsemblPlants; CDX68039; CDX68039; GSBRNA2T00099262001. DR Gramene; CDX68039; CDX68039; GSBRNA2T00099262001. DR OMA; TNGHNQD; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 59769 MW; 105288E365E769C2 CRC64; MSPPPSATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSFSTA APVPCVVSAV ELLADPITDE VFAHLALQPI SPEHFSPSNF SGFGSDDDDD NNSSSSNKVV TFAKILTPSD ANNGGGFSVP RYCADSVFPP LDFHADPPVQ KLFITDIHGV VWDFRHIYRG TPRRHLLTTG WSKFVNGKKL ISGDSVVFMR KSVDEMFIGV RRAPISNHGD EYYGGGKKGF RRIGMGKLTA EAVSEAVNKA VQGYPFEVVY YPTAGWSDFV VRAEDVEVSM AGYWSPGTRV KMAMETEDSS RVTWFQGVVS STFQETGLWK QLQITWDEPE ILQNLKRVNP WQVEVVANSS QLLAIYPPTK RLKHSDSASG FLSGEGEMLY SGRGQQAVDP SPYMFSYTTF PAGMQGARHY EFGSFNSTGF IGENTPQLCT NNFFSPLPGL RKVSTEMMNY GSPLSDDLSP NSNTTNVSSG NELVGNRGHA VRVSSIQLFG QIINVQELTE SGLAEGLYEE DGSKESSDNE VVNETQLSLT YAQGM // ID A0A078BWW9_BRANA Unreviewed; 495 AA. AC A0A078BWW9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaC01g06860D protein {ECO:0000313|EMBL:CDX68767.1}; GN Name=BnaC01g06860D {ECO:0000313|EMBL:CDX68767.1}; GN ORFNames=GSBRNA2T00130468001 {ECO:0000313|EMBL:CDX68767.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX68767.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX68767.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031789; CDX68767.1; -; Genomic_DNA. DR EnsemblPlants; CDX68767; CDX68767; GSBRNA2T00130468001. DR Gramene; CDX68767; CDX68767; GSBRNA2T00130468001. DR OMA; ECPEADT; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 495 AA; 55411 MW; 25B84E852C077FE6 CRC64; MVVPPPQPSL FQLTFLTGDK PLLQTLDDEF ISSHTKVLLI SDASDKIWEV KLDGNRLAGG WEEFAAVNNF SEGNVLVFRH NGEEIFHVAV SSESDDDESD DTDDSESDDE SNDTDDSESD DSEGDSSLVN KEADSSSDCF LRARVTPYSL TKDRLDLSKD FKFMLFDEHK KPFEIYLVNE KGRKWTLRLS RNISSGAFYI TRGWANFCSA NGLIRGDFCY FKLSESGERP VLLLCSHESG NGHEDKEEEE ECPEADTLKI CSVGGCSNEK NTPSRFLTRK FTPSRFKTGQ LYISMLSSGV LRESGIKKSG EITLLDNDGR KWPSYLNKTG QPGGEWCYIR KGWREMCEAN GVEVNDSFVL ELICEAANPI FKFHSKIKNK GKGNIVTSKK RALHARTVER TPGVEIDGER GSKRGCTRVS NRSNTYLKGK QPESCSVSDQ VANVRQSVLD TLNTIRHFKA ELKTRERNLE ASLLELDGLG EKILGISKIL NNNLA // ID A0A078BWX1_BRANA Unreviewed; 383 AA. AC A0A078BWX1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=BnaC01g06810D protein {ECO:0000313|EMBL:CDX68772.1}; GN Name=BnaC01g06810D {ECO:0000313|EMBL:CDX68772.1}; GN ORFNames=GSBRNA2T00130479001 {ECO:0000313|EMBL:CDX68772.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX68772.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX68772.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031789; CDX68772.1; -; Genomic_DNA. DR EnsemblPlants; CDX68772; CDX68772; GSBRNA2T00130479001. DR Gramene; CDX68772; CDX68772; GSBRNA2T00130479001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 383 AA; 44001 MW; FED47B3A32AEEADB CRC64; MENASLFSPA NPHFFQPLLT GFQSHLKIPV KFFSKHIEGK HEGKTVKLRS DSSDRTWKVK MEGHRLTEGW KEFAKAHDLR VGDVVIFRQE GDMLFHVTAF GTSCCELQYV LSGRHDVKEE GDVIGESSRR EKESSPSLTC FNQTVTAGSL SNGLVVSYSR CAFRFRNKGR HKVVLMNQEG ESWESEVKCK RSGQVFICRS WRIFCTASRL EVGDSLQFKL LQNTETPVFQ LSSHLKVKRE KGTLPEEEEE EDNVVDKTKK PRFVTITPSA SNLEIGKQYL PVHFTRANKL NRPGKIVLVD KNKVEWSMKL KKDIRSGTMY IINGKGWKRF CAANKVVAGE SLTLELIRRG RIPLLKFFSK MEQPPFKTKT RERKRTRVQR LSQ // ID A0A078BY10_BRANA Unreviewed; 514 AA. AC A0A078BY10; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaC01g06840D protein {ECO:0000313|EMBL:CDX68769.1}; GN Name=BnaC01g06840D {ECO:0000313|EMBL:CDX68769.1}; GN ORFNames=GSBRNA2T00130472001 {ECO:0000313|EMBL:CDX68769.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX68769.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX68769.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031789; CDX68769.1; -; Genomic_DNA. DR EnsemblPlants; CDX68769; CDX68769; GSBRNA2T00130472001. DR Gramene; CDX68769; CDX68769; GSBRNA2T00130472001. DR OMA; MLELICE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 514 AA; 58374 MW; 294462D69062E160 CRC64; MVIPPKPSLF HLKFLTGEKP LLTLDDEFLR NHTKVLLISD ASGKIWEVKL DGNRLAGGWE EFAAVNNFSD GNVLVFRHNG DEIFHVAVSS DIQHASPSFT DTDDTEVDDE ADGEDEDTDD DAWDVLVRKN KKPEADSCFL RARVTRYNLI KDRLDLSRDF KFMSFNKHNK PCEIYLANEK GRKWTLRLSR NISSGAFYIT RGWSNFCSAN GLIRGDFCYF KLSKSGERPV LLLCSHESGN GHEDKEEKRP EADPVKVCSV GGCTKEKNTP RILTLKYTPS RFKTGQLYIS PGFLLESGIR KSREITLLNK DGRKWPSYLQ MTGKSRSEWF YMRKGWREMC KANGVEVNDS FMLELICEDV TPIFKFHSKI ENKGACESVE KTQGVEIDGQ RGSKRGHTRV SNRSNTNSRK FQRTLPESCS VSDLVANVKQ RIQDTLNTLR HFRAEIETKV KNLEAPLLQV DALGERILGI SKILNSNLQK HYLSTHSMNF MKAAAFGSSS LGSRISIDME VEDD // ID A0A078C0U5_BRANA Unreviewed; 427 AA. AC A0A078C0U5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=BnaC01g06850D protein {ECO:0000313|EMBL:CDX68768.1}; GN Name=BnaC01g06850D {ECO:0000313|EMBL:CDX68768.1}; GN ORFNames=GSBRNA2T00130471001 {ECO:0000313|EMBL:CDX68768.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX68768.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX68768.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031789; CDX68768.1; -; Genomic_DNA. DR EnsemblPlants; CDX68768; CDX68768; GSBRNA2T00130471001. DR Gramene; CDX68768; CDX68768; GSBRNA2T00130471001. DR OMA; RRTHASH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 391 418 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 427 AA; 48600 MW; 124FBE768E838212 CRC64; MPNHIHILWF LKITHIRLHD LITNGGSTTS PKSNAPFFVV SLASHNSNPI IPDAFFTTHL DGNNELTKLK LTSDACDTTW QRGRGNDLPP LTITWDKVSY SRNYSPKKRS RLKTESSSIE NSCILGVTSS NLRLNRVVST YNSTFFTKAN GLHKSWCEIN VINQSGKSWV MGLRHNKGTG QDFMRGGWRS FCRANKLKTG SFYRFELVLT RTRPTLKLCS KAKVSAKPNR AGQRSSMNRC RFMTVTLKAY MLKSRQLDGF KLCSIFETLL RGRTGSRKEE RLIWWTKMEE HGRLCVASGG ITTGETFTLK FVREKRQNSD ASVLLQGQET KVNTETRFQK KASVSVEGEP SRRTHASHKS TVDSQNLECK QPLETIYHQV RQSMLNVLAD VRRFGSELEI KEQNLEAVLE EIDLLGEKVS EINKLFK // ID A0A078C5X6_BRANA Unreviewed; 518 AA. AC A0A078C5X6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=BnaC07g43390D protein {ECO:0000313|EMBL:CDX72317.1}; GN Name=BnaC07g43390D {ECO:0000313|EMBL:CDX72317.1}; GN ORFNames=GSBRNA2T00099806001 {ECO:0000313|EMBL:CDX72317.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX72317.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX72317.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031796; CDX72317.1; -; Genomic_DNA. DR EnsemblPlants; CDX72317; CDX72317; GSBRNA2T00099806001. DR Gramene; CDX72317; CDX72317; GSBRNA2T00099806001. DR OMA; ARTETEC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 177 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 177 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 477 504 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 518 AA; 58097 MW; 547B22A4FC150D78 CRC64; MVDPVMASST KKPIFILDLS GQNSNPMIPD SFVSNHLKGN IQSTKLKLTS DASDRTWEVE LDGQRFARGW KHFSDHHCVR SDDVLSFRQD GDMVFHVTPF GRRFTQQIQF ISSTSEASDD DDEHNIFDDD VYDDEDIGDE DVGYDDDATS EEELYPNKTL SKKRARTETE CSSENTYLVA HATPSSLSRN HMYLPSKFAR ANGLNNRQCE IDLRNEHGKS WTLDLTHHKS TGQAFVRNGW TSFCKANGIK AESFRRFKLV QTGTKPVLQL SPNTEGDDEI ESEDCSEPSS MNQNRIVALE LKPYMFKSGR VRVPASFGRA NGINEAGKIT IVNKDGVEWK LHLGNMKGRE LFYIRGLRNC FVANGIKKVG DSFTLEAIRG GPNPILKICS KEASCDGYKT PQPRMIQASR DEEEKETKVQ KKARVSAVGG PSHRTRASNR SSAGPSNLQH KQPIQPCSIS DQVTKVKQSV VDALTDVRQF RSELEVKERN LEAALLEIDV LVGEKIMGIS KLFNINQV // ID A0A078C5Y1_BRANA Unreviewed; 368 AA. AC A0A078C5Y1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaC07g43440D protein {ECO:0000313|EMBL:CDX72322.1}; GN Name=BnaC07g43440D {ECO:0000313|EMBL:CDX72322.1}; GN ORFNames=GSBRNA2T00099812001 {ECO:0000313|EMBL:CDX72322.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX72322.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX72322.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031796; CDX72322.1; -; Genomic_DNA. DR EnsemblPlants; CDX72322; CDX72322; GSBRNA2T00099812001. DR Gramene; CDX72322; CDX72322; GSBRNA2T00099812001. DR OMA; HIEGKNE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 148 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 42464 MW; 0460B5E9DD291D3B CRC64; MNCLNSMANP PLESPTNPHF FQPLLPGFDT HLTIPVAFFS KHIEGKNEQR KAKLRSHASD KTWKVTIDGR RFTRGWKDFA TAHDLRIGDV IIFRHEGDMV FNVTPFGPSC CEIHYEQSHL IKEEEFDNND DDNENHCRTK SSFSFDYCFV AQVTASNLRL DTLDLPMEAE SSNALNKRCH EMIVVNKEGN SWTVSLRFRE SSGSYYIRGG WRRFCRDNRR KIGDLMVFNL VGDGKTSPMI CICPEEECSE LVRKAKRRSK WVASSSSRRN RFVTISLTRY NFRSSKLILP ATFMKINGIK RQNEIILMDK HGVRWVTKLV KDGSKYGKRG LGKGWKDFCE ANDVLKIGQP FLLELVWEDT LPVLKFCS // ID A0A078C661_BRANA Unreviewed; 989 AA. AC A0A078C661; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=BnaC07g44190D protein {ECO:0000313|EMBL:CDX72397.1}; GN Name=BnaC07g44190D {ECO:0000313|EMBL:CDX72397.1}; GN ORFNames=GSBRNA2T00099890001 {ECO:0000313|EMBL:CDX72397.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX72397.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX72397.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031796; CDX72397.1; -; Genomic_DNA. DR EnsemblPlants; CDX72397; CDX72397; GSBRNA2T00099890001. DR Gramene; CDX72397; CDX72397; GSBRNA2T00099890001. DR OMA; VKSQLIC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0010997; F:anaphase-promoting complex binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0097027; F:ubiquitin-protein transferase activator activity; IEA:InterPro. DR GO; GO:1904668; P:positive regulation of ubiquitin protein ligase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR024977; Apc4_WD40_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR033010; Cdc20/Fizzy. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR007378; Tic22-like. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR InterPro; IPR001680; WD40_repeat. DR InterPro; IPR019775; WD40_repeat_CS. DR InterPro; IPR017986; WD40_repeat_dom. DR PANTHER; PTHR19918; PTHR19918; 1. DR Pfam; PF12894; ANAPC4_WD40; 1. DR Pfam; PF02362; B3; 2. DR Pfam; PF04278; Tic22; 2. DR Pfam; PF00400; WD40; 2. DR SMART; SM01019; B3; 2. DR SMART; SM00320; WD40; 3. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF50978; SSF50978; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS00678; WD_REPEATS_1; 2. DR PROSITE; PS50082; WD_REPEATS_2; 3. DR PROSITE; PS50294; WD_REPEATS_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Repeat {ECO:0000256|SAAS:SAAS00723881}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221, KW ECO:0000256|SAAS:SAAS00723873}. FT DOMAIN 324 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 632 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 795 971 WD_REPEATS_REGION. FT {ECO:0000259|PROSITE:PS50294}. FT REPEAT 812 853 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 865 895 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 930 963 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT DNA_BIND 324 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 534 632 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 989 AA; 110827 MW; 894C902920685B00 CRC64; MEPSLKPNPF LSFSSFLHTH CNRFASDLSA RFEDTKRFAE SLTTRRFSPP PFASVSQSPK PSSAGTSTAT LNPSHVAKAL AGTSVFTVSN TNNEFVLISD PTGEKSIGLL CFRQEDAEAF LAQARLRRRE LKANAKVVPI NLDQDYVSVS YEFMCLGVKS QLICSCLAFI NLIYNMLIVY LLKVEGISFR FLPDPIQIKN AMELKSSSSK NGFDGVPVFQ SELLVVRKKN KRYCPVYFSK EDIEKELSKY TRASRADQQI MVGSLEDVLR KMERSEKNSG WEDVIFIPPG RSYAQHMQEE KKMEENCEDC MRWEEQLYWN HFQTVHFSQL LLPGFHNLLA IPKKFSTYCK RKLPKIVTLK SPSGAKYNVG LEEDDEKTLA FRCGWDKFVK DHSLHESDLL VFKFNGSSEF EVLIFDGDTL CEKPTSYFVR KYDLIDIDTM LPQTGIEQEE HSNSDIDTDS GQLPVISPTS KGPISEGKYP IGVFKKMRGQ ISINDLNRKA DVEMIPGGSR RRVGETNKRK ALSLAKRAVS RKGFLVVMKR SHVVSKCFLY VPVQWSARNM SREPQDVVMQ VGETKWQLKF KHYGSKGRGG VSVGWKKFVR DNNLCEGDVC VFEPTKPEAK PFHLDVYIFR AAEAESSNNT TSMNTSTHLK AQARCPLQEH FLPRKNSKEN LDRFIPNRSA MDFDYAHYAL TEGNKGKDQV SSPSREAYRK QLAETMNLNH TRILAFRNKP QAPVDLLPTD HSASLHHQPK SVKPRRYIPQ TSERTLDAPD IVDDFYLNLL DWGSANVLAI ALGHTVYLWD ASTGSTSELV TIDEEKGPVT SINWAPDGRH VAVGLNNSEV QLWDSGSNRQ LRTLKGCHQS RVGSLAGHTQ EVCGLKWSGS GQQLASGGND NVANLLATGG GGGDRTIKFW NTHTGACLNS VDTGSQMAEL TGHTSRVLYM AQSPDGCTVA SAAGDETLRF WNVFGVPETA KKAAPKAVHE PFSHVNRIR // ID A0A078C668_BRANA Unreviewed; 769 AA. AC A0A078C668; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaC07g43620D protein {ECO:0000313|EMBL:CDX72340.1}; GN Name=BnaC07g43620D {ECO:0000313|EMBL:CDX72340.1}; GN ORFNames=GSBRNA2T00099832001 {ECO:0000313|EMBL:CDX72340.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX72340.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX72340.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031796; CDX72340.1; -; Genomic_DNA. DR RefSeq; XP_013751290.1; XM_013895836.1. DR EnsemblPlants; CDX72340; CDX72340; GSBRNA2T00099832001. DR GeneID; 106453602; -. DR Gramene; CDX72340; CDX72340; GSBRNA2T00099832001. DR KEGG; bna:106453602; -. DR OMA; MFHSKDS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0016743; F:carboxyl- or carbamoyltransferase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.1370; -; 1. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 282 383 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 561 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 282 383 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 769 AA; 85093 MW; 9B6F95482833678B CRC64; MESTKVCMNA QCGSTSTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELVDNGGVTC ITCAKKSGLF SMNVESNGRE FPTFASAEHV SSVLERTNLK HLLHFQRISP TQPFLQMKQE ESLLPARLES LRHNTEKKES AQPNLSISLG PTLMTSQFHD VDDRSKTTPI FQLASRSRQL LPKPANSAPT TAPPMEPNGS LVSQIHVARP PPEGRGKTQL LPRYWPRITD QELQQLSGQY PHLSNSKIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTAAQM FKGSSEPNLN MFSNNLSSGC GDINWSKLDK SDDMSKDGLM LQPSLISARK RVRNIGTKSK RLLIDSVDVL ELRLTWEEAQ ELLRPPQSAK PSICTVEDHD FEEYDEPPVF GKRTVFVSRQ TGEQEQWVQC DACAKWRRLP VDTLLPPKWL CSDNVLDPGR SSCSAPDELT PREQDTLLRL SKEFKRRRLA SSNQEEASAL DTLANAAITT TGEQGETEVA ATTKHPRHRA GCSCIVCSQP PSGKGKHKPS CTCTVCEAVK RRFKTLMMRK RNRGEAGQAS QQAQSDQCRE ETEAESIPAV ELPAAGGNID LNSDPASRVS MMSLLQAATF PLEVYLKQKG VPNTAGEQQS SDIVSTENGS SSAAQEHDRD TSGAPEALN // ID A0A078CAT2_BRANA Unreviewed; 197 AA. AC A0A078CAT2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA03g31520D protein {ECO:0000313|EMBL:CDX73895.1}; GN Name=BnaA03g31520D {ECO:0000313|EMBL:CDX73895.1}; GN ORFNames=GSBRNA2T00111614001 {ECO:0000313|EMBL:CDX73895.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX73895.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX73895.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031800; CDX73895.1; -; Genomic_DNA. DR EnsemblPlants; CDX73895; CDX73895; GSBRNA2T00111614001. DR Gramene; CDX73895; CDX73895; GSBRNA2T00111614001. DR OMA; SCCEIRY; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 43 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 59 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 43 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 59 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 197 AA; 22502 MW; 65F55335C2E249BC CRC64; MDDRRLTQGW QKFAASHDLR VGDIVIFRHD GDLLLHVSFF GPSCCEIRYN HDDDDDNSCF VACVTASNLS TDMVHLPMDF SRSNGLTNRN CEIILLNEEG KQWTLLMRHH KASGRVCIRS GWKRFCYENR RRANDFLTFK LVRNGATPVL QLCSSSSSST TRPCRFVTLT LTPYTLKSSA LSAMCLLTYQ ERGGFKF // ID A0A078CBC8_BRANA Unreviewed; 404 AA. AC A0A078CBC8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=BnaC07g43400D protein {ECO:0000313|EMBL:CDX72318.1}; GN Name=BnaC07g43400D {ECO:0000313|EMBL:CDX72318.1}; GN ORFNames=GSBRNA2T00099807001 {ECO:0000313|EMBL:CDX72318.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX72318.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX72318.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031796; CDX72318.1; -; Genomic_DNA. DR EnsemblPlants; CDX72318; CDX72318; GSBRNA2T00099807001. DR Gramene; CDX72318; CDX72318; GSBRNA2T00099807001. DR OMA; FFLISIR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 167 187 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 372 399 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 404 AA; 46255 MW; 906CFE56F8F7807A CRC64; MVNASLLSPA TPHFFQPLLS HSKSHLNIPA KFFSGHIEGK QEGKTVTLRS DASEKTWKVE MKGQRLTQGW KEFVEAHALR VGDFVVFRLE RDMLFNVTAL GSSYCEIRYT PSGSRRQEEE EESVGTEKEV EKNLTRFVTL TPTSSSFETG KQFGKDLYIF FTNLEDYIYL IFSKILGAIL LAGLYWLHCI CKLRCSFFLI SIRFFHKLFN FVINSCRSSL HLPANFTRGN GLIKPGKIIM VDKKGDEWVM ELKVGKTNVS IMYMYIMSRN GWRIFCDVNE VRAGESLTLE LIRGGESPML KFCSEMEQAP FEAEACAHKR AKWSQEIREK TTEEGEPSHR ARASNKTNAN QENLQNKQPC SVSDLLTEVK HSVTKEQELE DSLQEINNLE RKIQRNKTTS SSNN // ID A0A078CCF6_BRANA Unreviewed; 358 AA. AC A0A078CCF6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA03g31530D protein {ECO:0000313|EMBL:CDX73894.1}; GN Name=BnaA03g31530D {ECO:0000313|EMBL:CDX73894.1}; GN ORFNames=GSBRNA2T00111613001 {ECO:0000313|EMBL:CDX73894.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX73894.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX73894.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031800; CDX73894.1; -; Genomic_DNA. DR EnsemblPlants; CDX73894; CDX73894; GSBRNA2T00111613001. DR Gramene; CDX73894; CDX73894; GSBRNA2T00111613001. DR OMA; HFISTIR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 40962 MW; F03E21F9C7AB162D CRC64; MANGSASSPI NPHFFQPLLP GFHSHINIPI AFYSKHIKGT TNEGYVNEVV KLRSDASDLT WEVKMDGRRL THGWEKFATG HCLKVGDIVI FRHDGDLLFH VTPFGPSCCE IQYNDDDDDD DDDDHDEKYH QQHTREAESS PDNSCFVARV TESNLKKDAL FLPQHFSRSN GFVNRECEII LMNEDREPWT LLMKYYKTNG YVYIRHGWRS FCQANRKRAN DVLTFKLVQT GTKPVLQLRA SVYNRGSSSS SSTSQDRFVT LTLKQYQLKS CKLCLPVPFA MANGIKNVRE IILVDRHGVR RTTSLKPDDK YGRMRLGEGC IKFCIASGVK TGESFRLELI KEKEEDTVNH LLKFSSKI // ID A0A078CDL1_BRANA Unreviewed; 238 AA. AC A0A078CDL1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA01g05160D protein {ECO:0000313|EMBL:CDX75186.1}; GN Name=BnaA01g05160D {ECO:0000313|EMBL:CDX75186.1}; GN ORFNames=GSBRNA2T00121030001 {ECO:0000313|EMBL:CDX75186.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX75186.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX75186.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031804; CDX75186.1; -; Genomic_DNA. DR EnsemblPlants; CDX75186; CDX75186; GSBRNA2T00121030001. DR Gramene; CDX75186; CDX75186; GSBRNA2T00121030001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 238 AA; 27096 MW; 4825E81569952CCA CRC64; MSSLMELSSQ LFHQILDESL LVTFVLFTVK SNVHVDKIYR PQYLLPSTNQ IRFACCQRLI KSGLIVTKNT ATIPDSFISN HVKGKTQSTK LKLTSDVSDR SWEVELDGQR FARGWKQFSV HHGVRNDDVL SFRHDGDMVF HVTPFGRSFS YQIQFISSTS EDENKDDEHN IFDDDVYDEE EEHADAGNDD DDDGDSTSEE ELFPSSKKKA ITETETSLED SYLVAHVTSS NLGRNQMV // ID A0A078CED4_BRANA Unreviewed; 366 AA. AC A0A078CED4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA01g05150D protein {ECO:0000313|EMBL:CDX75187.1}; GN Name=BnaA01g05150D {ECO:0000313|EMBL:CDX75187.1}; GN ORFNames=GSBRNA2T00121031001 {ECO:0000313|EMBL:CDX75187.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX75187.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX75187.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031804; CDX75187.1; -; Genomic_DNA. DR EnsemblPlants; CDX75187; CDX75187; GSBRNA2T00121031001. DR Gramene; CDX75187; CDX75187; GSBRNA2T00121031001. DR OMA; SERTWEV; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 148 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41479 MW; E98F4E26D88CB3E5 CRC64; MEKASLLTPA NPHFFQPLLT GFQSHLNIPV TFFSKHIEGK HEGRTVKLRS DCSDRTWKVK IEGHRLTDGW KEFAKAHDLR VGDVVIFRHE GDMLFHVTAF GTSFCEIQYV LSGIHVKVKE ESEEIGNNGI IHLQSSRREK ESSSKPTCFS QSVTASNLSR GAVGVPLDFA RRNGLNKGRR VIALRNQEGK TWESKLKSTR SGQVFICRNW RSFCTASKLK IGDSFQFKLL QNTETPVFQL CSLSKHLPVH FTRGNKLNKP GKIVLVDKDK VEWSMKLNQD SRSGTMYIMG GTAWKSFCAA NGVVVGESLT LELIRRGMIL LLKFCSKMEQ PPFKTKARKH KRARVQRLTR ESRSEDDVSS QEGIVK // ID A0A078CEN7_BRANA Unreviewed; 819 AA. AC A0A078CEN7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA04g07950D {ECO:0000313|EMBL:CDX74594.1}; GN ORFNames=GSBRNA2T00114551001 {ECO:0000313|EMBL:CDX74594.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX74594.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX74594.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031801; CDX74594.1; -; Genomic_DNA. DR EnsemblPlants; CDX74594; CDX74594; GSBRNA2T00114551001. DR Gramene; CDX74594; CDX74594; GSBRNA2T00114551001. DR OMA; PHHQYLQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 819 AA; 90458 MW; A634F3644B0C8FD2 CRC64; MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLHDGRGEL GSGLPWLRGG GGGEQQGLLP LNYPSVGLFP WMQQRLDLAQ LGTDNNQQYQ AMLAAGLQNM GGGDPLRQQF VQLQEPPPHH QYLQQSASHN SDLMLQQQQQ QHLMHAQTQI MSENLPQRQE VSKQQPGGGG QQSVDQNAYL NALKMQNGQL QQWQQHSDMP SPSSFMKADF TDKFPTTASP MQQNSTSPGS AGHGSNLLNF SITGQSVLPE QLMGEGWSPK ASNTFSEPLS LPPQAYAGKS LALETASANV NPSVFGVDPG SGLFLPSTVP RFASSSSGGD AEAYPMSLAD SGFENSLYNS CMQDTTHELL HGVGQISPSN QTKNFVKVYK SGSVGRSLDI SRFSSYHELR EELGKMFAIE GLLEDPLRSG WQLVFVDKEN DILLLGDDPW ESFVSNVWYI KILSPEDVQE MGDHGEGSGG SLPQNPTHL // ID A0A078CFS3_BRANA Unreviewed; 236 AA. AC A0A078CFS3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA03g31790D protein {ECO:0000313|EMBL:CDX73868.1}; GN Name=BnaA03g31790D {ECO:0000313|EMBL:CDX73868.1}; GN ORFNames=GSBRNA2T00111579001 {ECO:0000313|EMBL:CDX73868.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX73868.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX73868.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031800; CDX73868.1; -; Genomic_DNA. DR RefSeq; XP_013648184.1; XM_013792730.1. DR RefSeq; XP_013648185.1; XM_013792731.1. DR RefSeq; XP_013648186.1; XM_013792732.1. DR EnsemblPlants; CDX73868; CDX73868; GSBRNA2T00111579001. DR GeneID; 106353056; -. DR Gramene; CDX73868; CDX73868; GSBRNA2T00111579001. DR KEGG; bna:106353056; -. DR OMA; VNLECHG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 26840 MW; 3D281441203D27F6 CRC64; MLGNHYSRDI HHNTLSLHPH QNDTASHKES LFEKSLTPSD VGKLNRLVIP KQHAEKYLPL NNGGGEVTSE TTEKGMLLSF EDESGKCWKF RYSYWNSSQS YVLTKGWSKY VKDKHLDAGD VVFFQRHRFD FHRLFIGWRR RGEASSLSAV SQEARVNTTA YWSGLTTPYR QVEASTSSYP NIHQEYSQYG AVAETPTVVA GTSRTVRLFG VNLECHGDVV EPPPCSDGYN GQHIYY // ID A0A078CGG3_BRANA Unreviewed; 269 AA. AC A0A078CGG3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC03g40330D protein {ECO:0000313|EMBL:CDX75950.1}; GN Name=BnaC03g40330D {ECO:0000313|EMBL:CDX75950.1}; GN ORFNames=GSBRNA2T00123979001 {ECO:0000313|EMBL:CDX75950.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX75950.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX75950.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031805; CDX75950.1; -; Genomic_DNA. DR EnsemblPlants; CDX75950; CDX75950; GSBRNA2T00123979001. DR Gramene; CDX75950; CDX75950; GSBRNA2T00123979001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 269 AA; 30921 MW; B8C48C6B7BA091D8 CRC64; MLQERKMQEC LSKSSFSKSL SPGQNWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW QLWLRPDKKG LFMIKEDWDE FVDDNFLGPD DTLVFTHQDT MYFQVQIFKK DGKEIISAPL GLEPQKETTS ASGNTIQIEK KPSSSSGRTT TRGRKSCANL QNPERYLLNP QNPYFAKTLK KTNHLLHVGL PVIRQYGLEF GPHDSSMYFI LPDGNKVDGL TKYYNGLPSF LGWADVCQQY NLKIGDTVVC EFELSGRVVA AVRVHFLNE // ID A0A078CGI4_BRANA Unreviewed; 285 AA. AC A0A078CGI4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC03g39800D protein {ECO:0000313|EMBL:CDX75897.1}; GN Name=BnaC03g39800D {ECO:0000313|EMBL:CDX75897.1}; GN ORFNames=GSBRNA2T00123899001 {ECO:0000313|EMBL:CDX75897.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX75897.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX75897.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031805; CDX75897.1; -; Genomic_DNA. DR RefSeq; XP_013653363.1; XM_013797909.1. DR EnsemblPlants; CDX75897; CDX75897; GSBRNA2T00123899001. DR GeneID; 106358159; -. DR Gramene; CDX75897; CDX75897; GSBRNA2T00123899001. DR KEGG; bna:106358159; -. DR OMA; RGWIKLA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32884 MW; B64157F16952DE8C CRC64; MEWNRGFGRV KEERKSLSFF KIFYSADLSS ESMRGIPYDF MKNVSKEDFS CKMVIRTKWG RSWEVDISMN PRFYYMEKSG WNQFVSDNAL GSNEFVTFTH SGLMCFNVNI YRESGKEIVL PHATTPFSGI KNEEGERSYK DVKKEDESMG GVGHVEIGES SRGAALRKKK AEKHKRRKKV KYGVPRFKIT ITKSYLKSLP IPTFFDKYLK SESKVYKIHH SEGDGSWEVL SLVHQAHIVL SRGWIKLARE YPLAVGDRCT FHLVKPTEFV LTSKKAKAIE ISISD // ID A0A078CHU9_BRANA Unreviewed; 531 AA. AC A0A078CHU9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC08g33820D protein {ECO:0000313|EMBL:CDX76796.1}; GN Name=BnaC08g33820D {ECO:0000313|EMBL:CDX76796.1}; GN ORFNames=GSBRNA2T00127295001 {ECO:0000313|EMBL:CDX76796.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX76796.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX76796.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031808; CDX76796.1; -; Genomic_DNA. DR EnsemblPlants; CDX76796; CDX76796; GSBRNA2T00127295001. DR Gramene; CDX76796; CDX76796; GSBRNA2T00127295001. DR OMA; GRFLTIR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 146 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 434 530 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 146 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 434 530 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 61097 MW; D67849CBE3D55C96 CRC64; MAFCSPTNPH FFQPLLPGFT KHLDIPVAFF LKHLDKSNKG KTAKLRSDAS ETTWNVKLDG RRFSDGWEYF AVAHDLRVGD IVVFRHEGEL VFYVTALGPS CCEIQYGEED SQEEDKSEEL CDTMEKISRM KKRPKTEKKN SEDQSCFVIT VTESNLRRDI VYLPKAFAVV NCLMKKLEIV LMNEERESWK LYLTQESYSS RFYMSKGWRS FCVANGKKPG DMFTFKMVQN EATPVLKLLP LNNEDLHKLV DTEEVPKKKR QDIEADSSFV AIVTASNIRR DTMYLPKKFA ASNGLKSKFK IDLMNEKGES WTIELRHEPY SGRFLIRSGW RSFCVANGKK PGDMFNFKLI RNVETPVLKL FHLNLPKLGK FPLNMHKLEP SNDTRQGFEA TEKEFLGVQT NRDDSRQEPT NEAIRKGKWL EANETTIKEE NITTSENRFV TLILTTSKLD LPLEFTKGNG IKNAEKIKMI DRYGTTWSTS LLMDKKKRGA MKLGKGCIRF CEVNGVKMGE SFVLELVWED TVPVLKFCSK C // ID A0A078CIT4_BRANA Unreviewed; 910 AA. AC A0A078CIT4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC08g33860D protein {ECO:0000313|EMBL:CDX76800.1}; GN Name=BnaC08g33860D {ECO:0000313|EMBL:CDX76800.1}; GN ORFNames=GSBRNA2T00127299001 {ECO:0000313|EMBL:CDX76800.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX76800.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX76800.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031808; CDX76800.1; -; Genomic_DNA. DR EnsemblPlants; CDX76800; CDX76800; GSBRNA2T00127299001. DR Gramene; CDX76800; CDX76800; GSBRNA2T00127299001. DR OMA; ISDDITW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 7. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 7. DR SUPFAM; SSF101936; SSF101936; 7. DR PROSITE; PS50863; B3; 7. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 281 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 408 503 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 510 605 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 650 746 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 807 905 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 281 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 408 503 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 510 605 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 650 746 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 807 905 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 910 AA; 102604 MW; A0F46AC1737CF94E CRC64; MAKSTLLHPQ FFHTLVPGCG FHTHLIIPLD FFSKYIEGRS VDNTAQLKSD SSDITWQVKM SGPILSDGWR EFTVAHSLQA GHLILVRYEG DMVFHVSHCL EIPSNNNKHS HPRTDVDDLP NKKKRAKTNS NETEADSSSL DNSCFVATVT SFNLLIYTLY LPQHFTSSNG LTRESHKIVL IDGEGRSWTL DLRFNASSDT FYMTRGWRSF CEENGQEAGG FFTFKLVGNG ETLVLSFRPT ESTSKQQEYF KHIKKQSLYI DPSNNGDNSS KDSSPSSQNR LVTIKIRPDI LTCNRMRLPK QFVMESNMNK PGTIYLLGKD DTKWTTKLVK ERDGRMKLGS GWTVFAEANG FKPGESVTLE SVWEDGTPMI RFLRTGSNSS KDTKKESVSM EVIEPRTSGS SSEIHDRFVT LTLLPEDVKA GVLIIPSQLL EANGVNKLGK ITILGEKKME LSGYLLSRGG TVALENGWGE FCEANGVKLG ESFTLEFIKK PDKTTHLEGK RSRNLENMVS QHFFQPLLPG FHSHLTIPVA FCSKHVEGRN EHMTTAKLRS DISDDITWKV KIEDGRKLTD GWKEFALAHD LRVGDIVIFR QEKDMAFHIT LFGPSCCEIQ YGSCLKKKNK LKLSKIQNKK KVKKKNKKKY VESSLLDPSC FVNNVRPSSL RDNRLTLPKR FVRENGLETR CGEIVLMNEK GRSWNLNLAR KDSCGTMSIT GGWKSFCNAS GLRAGSLFTF KLIKRGDTLV LLKSPSSIKS AEEDCLEAYE IEPDREEASN QDEKPRLLWK ASTSSPSQKK PRSLWKASTS SPSQNLFLTL TLKTSDVKNS RLFIPVNFTR LHGINKETEM AMLDKNGVKW STSLRSETSG GDRIRLVGGW KEFFKANCVE IGESIIVKLI WEGDKSCVLE FYSKVKQETK // ID A0A078CJ45_BRANA Unreviewed; 248 AA. AC A0A078CJ45; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA05g08190D protein {ECO:0000313|EMBL:CDX75073.1}; GN Name=BnaA05g08190D {ECO:0000313|EMBL:CDX75073.1}; GN ORFNames=GSBRNA2T00117107001 {ECO:0000313|EMBL:CDX75073.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX75073.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX75073.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031802; CDX75073.1; -; Genomic_DNA. DR EnsemblPlants; CDX75073; CDX75073; GSBRNA2T00117107001. DR Gramene; CDX75073; CDX75073; GSBRNA2T00117107001. DR OMA; NLECEVD; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28679 MW; 143C95A504B93B2B CRC64; MSINQYSSDF NYHSLMWQQQ QHRHHHHQND VAEEKEALFE KPLTPSDVGK LNRLVIPKQH AERYFPLAAA AADAMEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKQLD AGDVILFHRH RVDGGRFFIG WRRRGNSSSS SDSYRHLQSN ASLQYYPHAG VQAVESQRGN SKTLRLFGVN MECQLDSDLS DPSTPDGSTI CPTSHDQFHL YPQQHYPPPY YMDISVTGDV HQTRSPQG // ID A0A078CL89_BRANA Unreviewed; 114 AA. AC A0A078CL89; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC08g33850D protein {ECO:0000313|EMBL:CDX76799.1}; GN Name=BnaC08g33850D {ECO:0000313|EMBL:CDX76799.1}; GN ORFNames=GSBRNA2T00127298001 {ECO:0000313|EMBL:CDX76799.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX76799.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX76799.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031808; CDX76799.1; -; Genomic_DNA. DR EnsemblPlants; CDX76799; CDX76799; GSBRNA2T00127298001. DR Gramene; CDX76799; CDX76799; GSBRNA2T00127298001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 114 AA; 12556 MW; 70443229755EBAD2 CRC64; MKNQLVTLTL TPEDVRACQL ILPSQFMKAN GIYKLGKITL LGKNGTRWLA FLLSKDGLLA LGCGWKDFCQ ANGVKTGESF TLECICEAND ATHVFKHCSI SGVKTKKNSW LETC // ID A0A078CL93_BRANA Unreviewed; 813 AA. AC A0A078CL93; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE SubName: Full=BnaC08g33900D protein {ECO:0000313|EMBL:CDX76804.1}; GN Name=BnaC08g33900D {ECO:0000313|EMBL:CDX76804.1}; GN ORFNames=GSBRNA2T00127304001 {ECO:0000313|EMBL:CDX76804.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX76804.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX76804.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031808; CDX76804.1; -; Genomic_DNA. DR EnsemblPlants; CDX76804; CDX76804; GSBRNA2T00127304001. DR Gramene; CDX76804; CDX76804; GSBRNA2T00127304001. DR OMA; FAMELIW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR Gene3D; 4.10.60.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000504; RRM_dom. DR InterPro; IPR001878; Znf_CCHC. DR Pfam; PF02362; B3; 3. DR Pfam; PF00076; RRM_1; 1. DR Pfam; PF00098; zf-CCHC; 1. DR SMART; SM01019; B3; 4. DR SMART; SM00360; RRM; 1. DR SMART; SM00343; ZnF_C2HC; 1. DR SUPFAM; SSF101936; SSF101936; 4. DR SUPFAM; SSF54928; SSF54928; 1. DR SUPFAM; SSF57756; SSF57756; 1. DR PROSITE; PS50863; B3; 4. DR PROSITE; PS50102; RRM; 1. DR PROSITE; PS50158; ZF_CCHC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}. FT DOMAIN 8 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 328 421 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 480 575 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 618 687 RRM (RNA recognition motif). FT {ECO:0000259|PROSITE:PS50102}. FT DOMAIN 708 724 CCHC-type. {ECO:0000259|PROSITE:PS50158}. FT DNA_BIND 8 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 328 421 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 480 575 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 813 AA; 92171 MW; 4E6A919C27A0B3D0 CRC64; MAKSRLLRPQ FFHTLVPGFH THLMIPEDFF SKYIEEGRSM AAELISDASD KKWRLKMTGR RLGDGWREFA VDNNLRYEGD MVFHVSNLGQ NCCEIQDISP PCNNIDKTLL KKRLYPRTQV DRCDEDEDED GIVQLQSLRC GTDTELPINK KTEMRSPEAE AEPLSSSSDN SCFVALVTAS SLRTDKLYLP QHITSSNGLT RKCRKIVLVD GGERSWTLDL SFNKSSDTFC MSRGWRNFCE ENGQEPGGFF MFKLVGNRET PVLTSERESL STELSSEDEY IQGESSEDDC SSMESLMETG KKKCSPKRRV TSYASYSSYL PYYKRYVTFT LRHGYATHKH ELGSLPALFV RENGINKPGE IHLLGKDGTK WPTSLLVNIR GSMSLGKGWK DFVKANGVES GFTLKLMWED TTPVFCLCSA DSTSDREQEE YFKAIRKQSL FMDPSNIENS SKDEKNKEEN MSWERKKRGR GSTPLSLKQF VTLTITPCCF ITCRLVLPAQ FARENSLNKL RMIYLLGRDG RKWLTKIHQD KKGRMSLGKG WKDFVEANNF KSGDSFAMEL IWEDGTRMLR LSGAESRSSK AYVSTEAGSS SDSSSAIQNR SVRLTLTPEE VRAFSLMSRV YVGNLDPRVT ERELEDEFRV YGVIKSVWVA RRPPGYAFLD FEDSRDARDA IRDLDGKNGW RVEQSHNRGG GGGGRGDGGR GRGGSDLKCY ECGESGHFAR ECRSRGGGGS RRGRSPSPRG RSRSRSPPRY RKSPTYGGRR SYSPRARSPL PPRRRSPSPR VRNYSRSPPP YRAREEVPYT NGNGLKDVRR SRS // ID A0A078CLE6_BRANA Unreviewed; 300 AA. AC A0A078CLE6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC03g39810D protein {ECO:0000313|EMBL:CDX75898.1}; GN Name=BnaC03g39810D {ECO:0000313|EMBL:CDX75898.1}; GN ORFNames=GSBRNA2T00123900001 {ECO:0000313|EMBL:CDX75898.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX75898.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX75898.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031805; CDX75898.1; -; Genomic_DNA. DR RefSeq; XP_013653362.1; XM_013797908.1. DR EnsemblPlants; CDX75898; CDX75898; GSBRNA2T00123900001. DR GeneID; 106358158; -. DR Gramene; CDX75898; CDX75898; GSBRNA2T00123900001. DR KEGG; bna:106358158; -. DR OMA; FITFTHR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 34927 MW; 62AAE3EC760A0081 CRC64; MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT PRKPHTTTPF SGIKKEEDVK KEDESMGVGV EIEVQKKKRA VEVGESSRGA ALKKKKAEKP KPSKKKKKKM KRKKVKNGVP EFEITITNSY LKFLAIPKKF EEAYIPDESK VYMIHHSEGK GSWEVFCLVR QTRTIFSSGW CRLAREYPLS VGDRCTFHLV KPDEFVLTTK KAREEITVIE // ID A0A078CMI2_BRANA Unreviewed; 212 AA. AC A0A078CMI2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC08g02890D protein {ECO:0000313|EMBL:CDX77244.1}; GN Name=BnaC08g02890D {ECO:0000313|EMBL:CDX77244.1}; GN ORFNames=GSBRNA2T00127927001 {ECO:0000313|EMBL:CDX77244.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX77244.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX77244.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031810; CDX77244.1; -; Genomic_DNA. DR EnsemblPlants; CDX77244; CDX77244; GSBRNA2T00127927001. DR Gramene; CDX77244; CDX77244; GSBRNA2T00127927001. DR OMA; PRVNIKS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 24263 MW; EEE860528C5706B2 CRC64; MNTTRRASSR ITSAASQRRQ KPEPEPAVKK FIKIILPSTI KEKMMKIPAR FVRLGPKLTD TVTIQTPVGF KRSIRIKRTG NEVWFDNGWS EFAEAHSISE GHFLYFCYEG NSSFRVMIFD VSASEIDYPM DKVHVIESDD DEVMEVMDTD DEEGFTRVDS SDNDSSDEEA IDLEKLLKKK PRVNVKSETI NIGNVSRHKL KSSGFFFFFS CV // ID A0A078CN25_BRANA Unreviewed; 265 AA. AC A0A078CN25; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA09g33620D protein {ECO:0000313|EMBL:CDX78167.1}; GN Name=BnaA09g33620D {ECO:0000313|EMBL:CDX78167.1}; GN ORFNames=GSBRNA2T00129473001 {ECO:0000313|EMBL:CDX78167.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX78167.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX78167.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031814; CDX78167.1; -; Genomic_DNA. DR RefSeq; XP_013675315.1; XM_013819861.1. DR EnsemblPlants; CDX78167; CDX78167; GSBRNA2T00129473001. DR GeneID; 106380034; -. DR Gramene; CDX78167; CDX78167; GSBRNA2T00129473001. DR KEGG; bna:106380034; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 265 AA; 29896 MW; 6499069E81BCA9A4 CRC64; MAENEDDVVL PRFFKVFLSE TASESMAIPM SFNEHLEDPL PQKAKLQGTG GGVWTVTFTT IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGHHTFEVSV FGHGRCKETR AVVETVDLSD SGEEEEEEDS SVEDDGEVEK VSQSIYPVDS NQTVSDDAVV AWLSSMEVTG NPCFTTNLKQ RTYELLIPAN VVREHALTFG DNIKYIDAEG VMKGVRGKWA EDRVCFKGWD SICRRNRLKE RDTVNCEMLH IRKKVHSVKI TVTCG // ID A0A078CNY8_BRANA Unreviewed; 91 AA. AC A0A078CNY8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC08g33840D protein {ECO:0000313|EMBL:CDX76798.1}; GN Name=BnaC08g33840D {ECO:0000313|EMBL:CDX76798.1}; GN ORFNames=GSBRNA2T00127297001 {ECO:0000313|EMBL:CDX76798.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX76798.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX76798.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031808; CDX76798.1; -; Genomic_DNA. DR EnsemblPlants; CDX76798; CDX76798; GSBRNA2T00127297001. DR Gramene; CDX76798; CDX76798; GSBRNA2T00127297001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 91 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 91 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 91 AA; 10255 MW; 8F305F969E6A1519 CRC64; MTLTIEHASF RKGSLRLPLR FMKKHGLDKP RLITLLGKDG TKWVANLRRE SSGGRMRLGK GWKDFALDNG LKVGDSFTFE LVGKNNTPPM I // ID A0A078CPG1_BRANA Unreviewed; 722 AA. AC A0A078CPG1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA01g11380D protein {ECO:0000313|EMBL:CDX79071.1}; GN Name=BnaA01g11380D {ECO:0000313|EMBL:CDX79071.1}; GN ORFNames=GSBRNA2T00131605001 {ECO:0000313|EMBL:CDX79071.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX79071.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX79071.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031816; CDX79071.1; -; Genomic_DNA. DR RefSeq; XP_013737079.1; XM_013881625.1. DR EnsemblPlants; CDX79071; CDX79071; GSBRNA2T00131605001. DR GeneID; 106440033; -. DR Gramene; CDX79071; CDX79071; GSBRNA2T00131605001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 340 441 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 340 441 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 722 AA; 80671 MW; A641DB0F8799FC83 CRC64; MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CATAYEQGRF CDIFHQRASG WRCCESCGKR IHCGCVVSAP AFTLLDAGGI ECLTCARKKV SVGPNFRPPP PSFLFQSPIA DKFQDLSIDW NSSTRSYRPP NLSGPSILQS DLHNREDCYE FNQPTSKDKA TAYSTEKHRG MNDLMGRLMS VNSNNHTNSI LYNQKAGPNC KVPTCPNVNA YPPLISLKEG PLGAQRAFPV TTPVETNGHL GLGGRYLWHK DNSSPLSHLH NDVNRGADSP LESKNWNFGI HLDTPGKYQV VPRYSPKIPY KNQVLQNLSN ESVSVVTPLF EKILSVSDAG RVGRMVLPKK CAEAFLPQIS QTDGVPLTVH DSTGKEWTFQ FRFWVNNNSR MYFLEGITPC IQSMQLQAGD TVIFSRVDPE KKLIMGFRKA SVAQSSVQET ELNNNRESCT NGDAEPIDIH PPNGKKKSSM TTTRSKRQKV EKGELSEVKL TWEEAQGFIL PPPNLTPSII TIEGIEFEEY EDAPIIGKPN TGFGSTCSAN GRLLAEQDDE EAKDEAEGLL MSPKSSSKHP RHRNGCTCIV CLQSPSGSSP KHGRRCSCTV CDTVRRRRET LLQRKKKQQQ IEVENKTHKE LESPNSDEER HQSANNSGTT SKDHEPSKAQ IDLNFQPEKD EESPPPRSKT TTKDKSLHHD EASFKPPRSS SSAHNKLHVE SF // ID A0A078CT74_BRANA Unreviewed; 544 AA. AC A0A078CT74; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC06g20640D {ECO:0000313|EMBL:CDX79239.1}; GN ORFNames=GSBRNA2T00131843001 {ECO:0000313|EMBL:CDX79239.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX79239.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX79239.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031817; CDX79239.1; -; Genomic_DNA. DR EnsemblPlants; CDX79239; CDX79239; GSBRNA2T00131843001. DR Gramene; CDX79239; CDX79239; GSBRNA2T00131843001. DR OMA; AGDINHR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 544 AA; 59856 MW; B998CD1DF98209E2 CRC64; MSPPPPATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSLSTA PVPCVVSAVE LLPDPITDEV FAHLALQPIS PEHFSPSNFS GFGSDDDENN NSNSKVVTFA KILTPSDANN GGGFSVPRYC ADSVFPPLDF HADPPVQKLF ITDIHGVVWD FRHIYRGTPR RHLLTTGWSK FVNGKKLIAG DSVVFMRKSV DEMFIGVRRA PNSNHGDEYY GGGKKGFRRI GMGKLTAEAV SEAINKAVQG YPFEVVYYPT AGWSDFVVRA EDVEVSMAGY WSPGTRVKMA METEDSSRVT WFQGVVSSRF QETGLWKQLQ QITWDEPEIL QNLKRVNPWQ VEVVANSSQL LAIYPPTKRL KHSNSASGFL SGEGGEMLYS GRGQQAVDPS PYLFSYTTFP AGMQGARHYE FGSFNSTGFI GENTPQLCTN NFFNPLPGLR KISTEMMNYG SPLSDDLSPN SNTTNLSSGN EQVGNRGHAV RVNSIQLFGQ IINVQELTES GLAEGLYEED GSKESSDNEV VNETQLSLTY AQGM // ID A0A078CT97_BRANA Unreviewed; 584 AA. AC A0A078CT97; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA05g01310D {ECO:0000313|EMBL:CDX80025.1}; GN ORFNames=GSBRNA2T00132904001 {ECO:0000313|EMBL:CDX80025.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX80025.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX80025.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031819; CDX80025.1; -; Genomic_DNA. DR RefSeq; XP_013747619.1; XM_013892165.1. DR EnsemblPlants; CDX80025; CDX80025; GSBRNA2T00132904001. DR GeneID; 106450494; -. DR Gramene; CDX80025; CDX80025; GSBRNA2T00132904001. DR KEGG; bna:106450494; -. DR OMA; ISVNKYM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 473 565 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 584 AA; 65837 MW; B96033AA2619FD6C CRC64; MENVVDDQLY MELWKACAGP LVEVPRYDER VFYFPQGHME QLVASTNQRV VDKDIPVFNL PPKILCRVLN VMLKAEHETD EVYAQITLQP EEDQSEPTSL DPPLTEPAKQ TVDSFVKILT ASDTSTHGGF SVLRKHATEC LPPLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGHQTGDL RVGVRRLAKQ QSTMPASVIS SQSMHLGVLA TASHAFNTTT MFVVLYKPRI SQFIISVNKY MAAMKKGFGI GMRFRMRFEG EESPERIFTG TIVGTGDLSP QWPASKWRSL QVQWDESSTV QRPNKVSPWE IEPFLPSTLT TSPTQPHSKS KRSRPIDSSV LEITGSPVAS NFLSSFPKIH EPSPSLKLLF QDPSSERNSN KTEAPATSCC RLFGFDLKSK PASAPNPNDK QQLISVDSNN TGSAKCQDPN SSKDQKQQTS STRSRTKVQM QGTAVGRAVD LTLLRSYDEL IRELEKMFEI EGELRTKDKW AIVFTDDEGD MMLVGDDPWD EFCKMAKKLF IYSSDEVKQM SSKSLLDDEC TMVHLEPDQR TVKL // ID A0A078CTW1_BRANA Unreviewed; 242 AA. AC A0A078CTW1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC09g35450D protein {ECO:0000313|EMBL:CDX80197.1}; GN Name=BnaC09g35450D {ECO:0000313|EMBL:CDX80197.1}; GN ORFNames=GSBRNA2T00133138001 {ECO:0000313|EMBL:CDX80197.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX80197.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX80197.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031820; CDX80197.1; -; Genomic_DNA. DR EnsemblPlants; CDX80197; CDX80197; GSBRNA2T00133138001. DR Gramene; CDX80197; CDX80197; GSBRNA2T00133138001. DR OMA; AFEFDCY; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 31 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 42 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 242 AA; 27028 MW; 8B2C75CD3DEB8BEF CRC64; MNKGFSFTLF FLLDSPVTLY LTFIISFFFF FGTGDSSDDC LPKFFKVYLP DDSGDDLDIP ISFNSFLPKP LPEYIIVRSI YGNIWKLKLR KHCGDDVDKV SMLNGWKRIV KDEDLKGGEF LAFEFDCYRL FNFCIYGQAT CKRLGSSVKT KEITDESEGE DGKSGVDVIV IDDDSTDDDD DDDSVSSGQG SGMEDQSTKD IIVIDEDTTD DDDDETRSGV ETEIIEKGSS EVSTKSDSGE GE // ID A0A078CUW1_BRANA Unreviewed; 279 AA. AC A0A078CUW1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC07g29270D protein {ECO:0000313|EMBL:CDX80517.1}; GN Name=BnaC07g29270D {ECO:0000313|EMBL:CDX80517.1}; GN ORFNames=GSBRNA2T00133621001 {ECO:0000313|EMBL:CDX80517.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX80517.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX80517.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031821; CDX80517.1; -; Genomic_DNA. DR EnsemblPlants; CDX80517; CDX80517; GSBRNA2T00133621001. DR Gramene; CDX80517; CDX80517; GSBRNA2T00133621001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 31513 MW; E65435CC68700171 CRC64; MSGKSVYNLL QDNVSKPRFC KSLSTGETWS SKSMVALFSI ERIIPEEFVR SAPVAFEHRV VFSVRWGNSW QLWLQRDKNG LFMEEEDWDE FVSDNFLGPN DVLLFIHVDT MFIEVQIYKQ DSYHLKEITS APLQTDPQAE VVTPLPQTSP PETPAPAPAS TSGARQADAL VNNPEQYLSN PSNPFYVKKL GKKIDVLYVS HLVTERYGLQ FGPHNSPMFY ILPNEKIEAN TKIYGGCACF NGWAAICRKY KLKQGDAVVC ELERSGGVVT AVRLHFPNE // ID A0A078CV17_BRANA Unreviewed; 275 AA. AC A0A078CV17; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC03g02500D protein {ECO:0000313|EMBL:CDX80996.1}; GN Name=BnaC03g02500D {ECO:0000313|EMBL:CDX80996.1}; GN ORFNames=GSBRNA2T00134427001 {ECO:0000313|EMBL:CDX80996.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX80996.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX80996.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031823; CDX80996.1; -; Genomic_DNA. DR EnsemblPlants; CDX80996; CDX80996; GSBRNA2T00134427001. DR Gramene; CDX80996; CDX80996; GSBRNA2T00134427001. DR OMA; NMNIGFT; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 275 AA; 31714 MW; 3B39393417114619 CRC64; MSVNHYSTDN HHALFWQNLH TTDTSEPTTT AAAWLSEDQK EYLFEKSLTP SDVGKLNRLV IPKQHAEKYF PLNTTISDNA DEKGTLLSFE DESGKCWRFR YSYWNSSQSY VLTKGWSRYV KDKQLDPADV VFFQRQRSDS RRLFIGWRRR GQSSSSAANP TSYSSSMTAP PYSNYSNRPA HSEYSHYGIK LTTLYTNIYI FHIRKYRYKE TISLLQKKLN KKSAILYKGI SFATAAAAES TTTKTCTIIT LLTPQPHNMN IGFTGDTMKQ VEDRR // ID A0A078CWN5_BRANA Unreviewed; 343 AA. AC A0A078CWN5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC02g18650D protein {ECO:0000313|EMBL:CDX81561.1}; GN Name=BnaC02g18650D {ECO:0000313|EMBL:CDX81561.1}; GN ORFNames=GSBRNA2T00135275001 {ECO:0000313|EMBL:CDX81561.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX81561.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX81561.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031825; CDX81561.1; -; Genomic_DNA. DR EnsemblPlants; CDX81561; CDX81561; GSBRNA2T00135275001. DR Gramene; CDX81561; CDX81561; GSBRNA2T00135275001. DR OMA; RCSKKQA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 183 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 183 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 38323 MW; 84720B56D109F96F CRC64; MVFSCIDESS STSESFSPAT TTAAKFSAPP LPPLRLNRMG SGGSNVVLDS KNGVDIDSRK LSSSKYKGVV PQPNGRWGAQ IYVKHQRVWL GTFSDEEEAA HSYDIAARKF RGRDAVVNFK TFLASEDDNG ELCFLEAHSK AEIVDMLRKH TYADELAQSN KRNGANTNTI QSDTVSRTRE VLFEKVVTPS DVGKLNRLVI PKQHAEKHFP LPSLSVTKGV LINFEDVTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVTFER STGSDRQLYI DWKRSGPSKN PVQVVVRLFG VDIFNVTSTK PSNVVDACGG KRSRDVDMFA LRCSKKHAII NTL // ID A0A078CX51_BRANA Unreviewed; 312 AA. AC A0A078CX51; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC09g07580D protein {ECO:0000313|EMBL:CDX81347.1}; GN Name=BnaC09g07580D {ECO:0000313|EMBL:CDX81347.1}; GN ORFNames=GSBRNA2T00134896001 {ECO:0000313|EMBL:CDX81347.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX81347.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX81347.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031824; CDX81347.1; -; Genomic_DNA. DR EnsemblPlants; CDX81347; CDX81347; GSBRNA2T00134896001. DR Gramene; CDX81347; CDX81347; GSBRNA2T00134896001. DR OMA; VIHPCEM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35859 MW; B11EB3216C612FFA CRC64; MVERSEKGSY ARKDMEFFKV YLPEFSSRKL ACSSLISVIP PAFVNILEKL LPNQVGLLDE IGRLWKVETK TEEGVGDVVF KKGWEKFAND HSLEFGDFLV FSYDGVSRFS VKIFDKNGCK KYLVAVTTAD RSRVAVEKEP VHVKPVHDIS TKRCGKSRKR VSVKEEPSGN RVIHPCEMGC VPENKKHKGF EEPVYKPKNP HFVRNITNCF RQMEIPTTFL KSNGIEMEED FELCDENGKK WPMKVVIHDR GQRFSPGLWL SFCRSHKLST SNKCLFEFIV RSDGTCNQVL VRIFRGRMLN TVTINSYQVL AM // ID A0A078CY91_BRANA Unreviewed; 297 AA. AC A0A078CY91; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA05g01030D protein {ECO:0000313|EMBL:CDX80053.1}; GN Name=BnaA05g01030D {ECO:0000313|EMBL:CDX80053.1}; GN ORFNames=GSBRNA2T00132940001 {ECO:0000313|EMBL:CDX80053.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX80053.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX80053.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031819; CDX80053.1; -; Genomic_DNA. DR EnsemblPlants; CDX80053; CDX80053; GSBRNA2T00132940001. DR Gramene; CDX80053; CDX80053; GSBRNA2T00132940001. DR OMA; MFLQATS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 3 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 297 AA; 33822 MW; 32A5DFAF06206160 CRC64; MMMTNLSLSR EGEEEEEEEQ EEAKKPMEEV EREHMFDKVV TPSDVGKLNR LVIPKQYAER YFPLDSSTNE KGLLLNFEDL AGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRCVGDSGR DSRLFIDWRR RPKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP RHHHHSGYNY PQIPREFGYG YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ // ID A0A078CYI5_BRANA Unreviewed; 759 AA. AC A0A078CYI5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC09g35740D {ECO:0000313|EMBL:CDX80168.1}; GN ORFNames=GSBRNA2T00133089001 {ECO:0000313|EMBL:CDX80168.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX80168.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX80168.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031820; CDX80168.1; -; Genomic_DNA. DR EnsemblPlants; CDX80168; CDX80168; GSBRNA2T00133089001. DR Gramene; CDX80168; CDX80168; GSBRNA2T00133089001. DR OMA; QSHANPV; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 638 720 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 759 AA; 83959 MW; AF5536A4B0C134B9 CRC64; MEFDLNTEFA EVEEEENDEG GGARVEKGKR LGVLPSSSSS CSSRSSSSSS SSTTASASSI YSELWHACAG PLTSLPKKGN VVVYFPQGHL EQGVMVSYSS PLDVPKLDLS PQIFCRVAAV HLLANKETDE VYTQVTLLPL QELSMLNGEG KEVKELGGDE EKNGSSSVKK TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FAPLDYKQQR PSQELIAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KSLVSGDAVL FLRDENGELR LGIRRSARPR NGLPDSIIQK YSSSSILSLV ANAVSNKSMF DVFYSPRATH SEFVIPYEKY ITSIKNPIGI GTRFRMRFEM DDSPERRCAG VVTGVCDMDP YRWPNSKWRC LLVRWDESFM SDHQERVSPW EIDPSGSLPP LSIQSSPRPK RPWAGLLGTT TPQGNPITAE RGGFLDFEES VRPSKVLQGQ ENTGSASSSP LQGFDVMNRR ILDFAGMQQS HANPVLLSGR VKDRFGEFVD STSLDLDRFP RVLQGQEICS LRSFPQIAGF TPASASGSPN PFAYQANKSS FYPLASQGIR SSHIPYQSPY NAGDKSSSRK FDAQREGGLP KNVPFKVNMN ASTTGCKLFG FSLPVETPAS NQQSSSKRIC TKVHKQGSLV GRAIDLSRLN GYNDLLTELE RLFNMEGLLR DPEKGWRILY TDSENDMMVV GDDPWHDFCS VVLKIHLYTK EEVENGNDDN RSCLEQAALM MEASKSSSVS QPDSSPTGH // ID A0A078CYK9_BRANA Unreviewed; 220 AA. AC A0A078CYK9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC09g35440D protein {ECO:0000313|EMBL:CDX80198.1}; GN Name=BnaC09g35440D {ECO:0000313|EMBL:CDX80198.1}; GN ORFNames=GSBRNA2T00133139001 {ECO:0000313|EMBL:CDX80198.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX80198.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX80198.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031820; CDX80198.1; -; Genomic_DNA. DR EnsemblPlants; CDX80198; CDX80198; GSBRNA2T00133139001. DR Gramene; CDX80198; CDX80198; GSBRNA2T00133139001. DR OMA; IKIHIIS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 220 AA; 24746 MW; 8E947B9B9C7EE7DB CRC64; MKKVSGDSSD GRLPKFFKVY LPNDSGDDLE IPVSFNSCLP SSVPKSVTVT NINGHVWKLK LKKLSGDPEK FSMVDGWKRI VKDEDLKGGE FLAFEFDGSR LFNFCVYGQA TQLLDDPDSP SFTVILNPKK KSQLLIPSHI MKDYNLHFTE RITIVDPLVP KFGTLERKIK LQDNGCLFVK GFGSVFRRNN VKTTDTIICE VKKNGNDVAH ILKVHIVRGL // ID A0A078CZW4_BRANA Unreviewed; 287 AA. AC A0A078CZW4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA03g34360D protein {ECO:0000313|EMBL:CDX82385.1}; GN Name=BnaA03g34360D {ECO:0000313|EMBL:CDX82385.1}; GN ORFNames=GSBRNA2T00137507001 {ECO:0000313|EMBL:CDX82385.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX82385.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX82385.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031828; CDX82385.1; -; Genomic_DNA. DR RefSeq; XP_013741040.1; XM_013885586.1. DR EnsemblPlants; CDX82385; CDX82385; GSBRNA2T00137507001. DR GeneID; 106444056; -. DR Gramene; CDX82385; CDX82385; GSBRNA2T00137507001. DR KEGG; bna:106444056; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 185 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 185 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 33084 MW; 85F0A02111F68141 CRC64; MEWNRGFGRV KEERKSLSFF KIFHSADLSS GSMRGIPYDF MKNVSKEDFS CKMVIRTKWG RSWEVDISMN PRFYYMEKSG WNQFVTDNAL GSNEFVTFTH NGLMCFNVNI YRESGKEIVL PHTTTPFSGI KNEEGERSYK DVKKEDESMG GGVGHVEIGE SSRGAALRKK KAEKHKKRKK VKYGVPRFKI TITKSYLRSL PIPTFFEKRY LKSESKVYKI HHSEGDGSWE VLSLVHQAHI VLSRGWVKLA REYPLAVGDR CTFHLVKPTE FVLTSKKAKA IEITISD // ID A0A078D1H7_BRANA Unreviewed; 1974 AA. AC A0A078D1H7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=BnaA03g22950D protein {ECO:0000313|EMBL:CDX83211.1}; GN Name=BnaA03g22950D {ECO:0000313|EMBL:CDX83211.1}; GN ORFNames=GSBRNA2T00138754001 {ECO:0000313|EMBL:CDX83211.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX83211.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX83211.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031832; CDX83211.1; -; Genomic_DNA. DR EnsemblPlants; CDX83211; CDX83211; GSBRNA2T00138754001. DR Gramene; CDX83211; CDX83211; GSBRNA2T00138754001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 10. DR Gene3D; 2.40.330.10; -; 11. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 8. DR SMART; SM01019; B3; 11. DR SUPFAM; SSF101936; SSF101936; 11. DR PROSITE; PS50863; B3; 10. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 278 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 577 672 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 736 832 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 833 928 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 978 1070 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1123 1216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1300 1396 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1459 1552 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1614 1709 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 278 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 577 672 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 736 832 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 833 928 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 978 1070 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1123 1216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1300 1396 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1459 1552 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1614 1709 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 1408 1439 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1974 AA; 223302 MW; F68F041C795F9567 CRC64; MMFQVSDLGH RDVETPSSNN GQDNIGSMNK KHPYARQEAG FSSNHGDNQD INELPRKRNY PETEKGSSSR HSCIVADATT ASSLHKYTPV FLTQDFTSLG GLKGKCSPKR IISSMGTRFV TFTLAPVDVR HCRLRLPMQF SRENGINKPG KIYLLGKDGS KWLANLLQES RGRMTVGDGW KSFVKANGLK IGESYTLELN WEDTTPVLSL CPTDHHSIGI RAEGECSEAS ENESLPIRPS SGAEVIKYDS RKDESSSWER EKNHLRSRDS SSASQNRFLT LTITPDSLRH GRLRLPLEFM TENSMNRPGD ITLLGKDGAK WLASLLLERR GRMCLGKGWK DFAKANGLKT GDSITLESIW EDSTPVLRLL HIESTDDRRQ QGECSKAREK ESAFTEPSSG NKTRKLESNR EESRIYPLTR LDSSLVNQNR FEISTLSPEI LRHGAHDYQI GEIVVFRDER DMMFQVSDLG PRFSEIQSVL APSSNSDQEN IGSISIIRKE TGFSLYDGDD QYNIELPRKK KAKKNNPGTE ADSSPERSCF VAHVTASNLH PHLPQDFTSS NSPTQIVSSY LSSEKQLATF TLAPVDVRNC RLRLPMQFTR ENGINKPGKI YLLGKDGSKW LANLLLESRG RMTLGDGWKS FVKANGLKTG ESFTLKLNWE DATPVLSLCP PECSIDSREG GECSETIEKE PLPIVLSCGK EISKEDENMK KESRSWERET NLLIWRDSTV LSQNRCLTLT ITPDSLKHGR LRLPLEFMTD NSMNKPGEIT LLGKDGVKWL VSLLLEKRGR MSLGKGEVSK QSGNKTRKAE NRSSSWELEK RRSSSSSEIQ NRTVILTLTP EGVRDCKLQL PSQFMRTNGI MNPGKITLLG RSGMKWFAYL LSKDGTIALE NGWKGFCEAN GVMVGESFVL ELIPTQDADH VFKFYSNYGY HIHNKCSFLA MSFNLLYLMS HMRFTKFLIE ANAASTNQSM AKSTTLLSPQ FFHTLLPGFQ TQLTIPSDFF SNYIKDLETT TAELKSDSSL DITWKVKLTG RILNDGWGDF AVANNLHIGN VVLVRYEGGI VFHVSDLGPS FSQIQHINPP RQNIDAVTRN CSEAHSREDT SLIKKKLKPP VSYSSYSPCH KRFVTFTLPP EYATLCRLTL PNPFVKENGI SKPAEIRVLG KDGTKWPITL LLDKKGIMSF GKGWKEFVKA NGLETGFTLK LMWEDTTPSF SLCCPESASD RDEEECLESI KKQSLSIDRR IRDKPGKDEN NKEEKRSWER QKIRLRGRDV GDFEEVPINK KVKTDSHGTE AAFSSLDNSC FVAFVTDSSL DSDTLYLPRY FTSSNGLTRK CRKIVLIDGG GRSWAMDLSF NESSDIFYIS PGWRSFCDKN GLEAGGFFTF KLVGNEETPV LSFCPMESID SRSQKDCFEA HSTEVSNEEE DIERERNEEE TLMDIEEKKS KPEQRPVSYS SYSPCYKRFI TFTLPPYYAT LDKLTLPKLF VKENGINKPG EIYLLGKDGT KWLTRLLLDK KGLMRLGKGW KDFVKANGVE SGFTLKLIWE DTTPSFSLCC AESTGDKDEE EYLEAIKKQS LSIDRRIRDK ISKDENDKEE KMSWEREKIN MRGRDSTTSS QKQFLTLAIT PTSLRCNRMR LPIPFLRKSC MDKPGVIYLL GKEDTKWMAN LIQEGDGRMK LGKGWTAFAK ENEFKAGESV TLESIWEDET PMIRFLRTEA ESSKANKKES IYMEDTESRT RDSSTEIHAR FVTLTLKHED VKACMLILPS QFLKANGINK LGKITLLDEN EVELSAYLLS REGIVAVESG WESQSQKKRS TSLSCTYKKT VTTSLPQSSS TKMVQSVMEK HTLSMPDWSL LPEELLHMIC EMLVRIRLSL SFLPITPRES EDNMALPYRF QCSVKVELLF IVLNFQNLPK SFVRANGLET RCGDIVLMNE KVPMDSRLEI SSLSNSSKEE EHCFYVSLPP TENPKKMRAQ KLKK // ID A0A078D1J7_BRANA Unreviewed; 408 AA. AC A0A078D1J7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA03g22750D protein {ECO:0000313|EMBL:CDX83231.1}; GN Name=BnaA03g22750D {ECO:0000313|EMBL:CDX83231.1}; GN ORFNames=GSBRNA2T00138779001 {ECO:0000313|EMBL:CDX83231.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX83231.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX83231.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031832; CDX83231.1; -; Genomic_DNA. DR EnsemblPlants; CDX83231; CDX83231; GSBRNA2T00138779001. DR Gramene; CDX83231; CDX83231; GSBRNA2T00138779001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 294 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 294 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 45392 MW; 6F2AC0AD7A1D1E8A CRC64; MLSGSGSTSC DTHTNNEDQA NMGYISRKKH PITTEEVDDG QDNTGHKKVK KNNSEAEADS SSSDNSCFVA PVTASNLEED SLCLPPDFTI SNGFKRKCRK IVLTDERERS WALDLRFNKS SDTFCITRGW RNFCEENGRK EGSLFKFKLM RNGETPLLSV CPTESISDGT QGGDENIPQI CRDSTLPNPN RFVTLTLTND SLKSSRLYLP LPFLKENGMD KPGMVTLLGK DGTRMLANLL RENSGRMSLG KGLKDFARAN GLNMGESFTL ELIWENATPV LSLLSTEFRS QNRFVTLTLT QDSFKNSRLG LPLPFMRENG MNEPGTIALL GKDGTKWMTN LLRESQGRMS LGKGWKDFAR GNGLEIGESF TLESIWEDAT PMLSLSSRES KREKVYVSAE PTIGNIEE // ID A0A078D1U9_BRANA Unreviewed; 308 AA. AC A0A078D1U9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA03g21550D protein {ECO:0000313|EMBL:CDX83351.1}; GN Name=BnaA03g21550D {ECO:0000313|EMBL:CDX83351.1}; GN ORFNames=GSBRNA2T00138914001 {ECO:0000313|EMBL:CDX83351.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX83351.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX83351.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031832; CDX83351.1; -; Genomic_DNA. DR RefSeq; XP_013734859.1; XM_013879405.1. DR EnsemblPlants; CDX83351; CDX83351; GSBRNA2T00138914001. DR GeneID; 106438291; -. DR Gramene; CDX83351; CDX83351; GSBRNA2T00138914001. DR KEGG; bna:106438291; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34594 MW; A4F06EFC07656599 CRC64; MMTNLSLARK GEEEEAEAKK PTEEVEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD SSSNGKGLIL NFEDLTGKSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFLRCV GDTGRDSRLF IDWRRRPKVP DYTTSTSHFP AGAMFPRFYS FQTATTSTSY NPYNHQQPRH HHSGYCYPQI PREFGYGYVV RSVDQRAVVA DPLVIESVPV MMHGGARVNQ AAVGTAGKRL RLFGVDMECG ESGVTNSTEE ESSSSGGSLP RGGASPSSSM FQLRLGNSSE DDHLFKKGKS SLPFNLDQ // ID A0A078D251_BRANA Unreviewed; 329 AA. AC A0A078D251; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA03g35020D protein {ECO:0000313|EMBL:CDX82319.1}; GN Name=BnaA03g35020D {ECO:0000313|EMBL:CDX82319.1}; GN ORFNames=GSBRNA2T00137434001 {ECO:0000313|EMBL:CDX82319.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX82319.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX82319.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031828; CDX82319.1; -; Genomic_DNA. DR RefSeq; XP_013736461.1; XM_013881007.1. DR EnsemblPlants; CDX82319; CDX82319; GSBRNA2T00137434001. DR GeneID; 106439533; -. DR Gramene; CDX82319; CDX82319; GSBRNA2T00137434001. DR KEGG; bna:106439533; -. DR OMA; CATIDFR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 38058 MW; A24ADB91433459BB CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSRF KDELSVAVAL TVPDGHVWRV GLRKADNNNK IWFQDGWQEF VDRYSIRIGY LLIFRYEGNS AFSVCIYNLP QSEINYHSTG LMDSASHNNH FKRPRLFEDL EDEDAETLHT TASAIQSFFT GPVKPEEATP TQTSKVPKKR GRKKKNADHP EEVNSSAPRD DDPESRSKFY ESASARKRTV NAEERERAVN AAKTFEPTNP FFRVVLRPSY LYRGCIMYLP SGFAEKYLSG ISGFIKVQLG EKQWPVRCLY KAGRAKFSQG WYEFTVENNL GEGDVCVFEL LRTRDFVLKV TAYRVNEYV // ID A0A078D2B3_BRANA Unreviewed; 300 AA. AC A0A078D2B3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA03g34370D protein {ECO:0000313|EMBL:CDX82384.1}; GN Name=BnaA03g34370D {ECO:0000313|EMBL:CDX82384.1}; GN ORFNames=GSBRNA2T00137506001 {ECO:0000313|EMBL:CDX82384.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX82384.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX82384.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031828; CDX82384.1; -; Genomic_DNA. DR RefSeq; XP_013741041.1; XM_013885587.1. DR EnsemblPlants; CDX82384; CDX82384; GSBRNA2T00137506001. DR GeneID; 106444057; -. DR Gramene; CDX82384; CDX82384; GSBRNA2T00137506001. DR KEGG; bna:106444057; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 34808 MW; 170E07D2A83EC576 CRC64; MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT PRKPHTTTPF SGIKKEEDVK KEDESMGGGV EIEVEKKKRA VEIGESSRGA ALKKKKAEKP KLSKKKKKKI KRNKAKNGVP EFKITITNSY LKFLAIPKKF EEAYIPDESK VYMIHHSEGK GSWEVLCLVR ETRTIFSSGW CRLAREYPLS VGDRCSFHLV KPDEFVLTTK KAREEITVIE // ID A0A078D2X9_BRANA Unreviewed; 846 AA. AC A0A078D2X9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC08g19040D {ECO:0000313|EMBL:CDX83741.1}; GN ORFNames=GSBRNA2T00139470001 {ECO:0000313|EMBL:CDX83741.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX83741.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX83741.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031834; CDX83741.1; -; Genomic_DNA. DR EnsemblPlants; CDX83741; CDX83741; GSBRNA2T00139470001. DR Gramene; CDX83741; CDX83741; GSBRNA2T00139470001. DR OMA; SINAPTI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 740 824 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 846 AA; 93765 MW; F3E10D531DE61D6F CRC64; MASLACGEDK MKTNGLVNGG TTTSSTSQST LLEEMKLLKD QSGTRKPVIN SMLWHACAGP LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVLPV PDFGLLRGSK HPSEYFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWAFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFFNPRA CPAEFVIPLP KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGENDWGSLI KRPLPYATFP NMASEQLMKM MMRPHNNQNA VSSLMPEMQQ NVMMGHGGLL GDVKMQQPMV MNQVVQVQPD NNNPSVSNTS GQEQNLTQSI NAPTITENSS GRANHGNEEL SQKPSALSPL QADPCPEQIY PPQQSDPING FSFLETEELT SQVSSFQSLA GSYKQPLMLS SNESSPIVLP DSTNSFQDMW DNQLNGLKFD QFSPLMQQED LYGCQNMCMS NSTNSNILDP PPLSNTVLDD FCAIKETEFH SLVGNNNSFA QDVQSQITSA SFADSQAFSR QDNSGGTGGT SSSNVDFDDT SLLQQNSKGS WQKLATPRVR TYTKVQKTGS VGRSIDVTSF RDYEELKSAI ECMFGLEGLL TRPQTSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIRIL SPTEVQQMSE EGRKLLNSAC INDLKT // ID A0A078D359_BRANA Unreviewed; 324 AA. AC A0A078D359; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC07g22870D protein {ECO:0000313|EMBL:CDX83547.1}; GN Name=BnaC07g22870D {ECO:0000313|EMBL:CDX83547.1}; GN ORFNames=GSBRNA2T00139176001 {ECO:0000313|EMBL:CDX83547.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX83547.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX83547.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031833; CDX83547.1; -; Genomic_DNA. DR EnsemblPlants; CDX83547; CDX83547; GSBRNA2T00139176001. DR Gramene; CDX83547; CDX83547; GSBRNA2T00139176001. DR OMA; WAGMAGS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 202 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 202 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 36594 MW; 896BE29886B25E09 CRC64; MDAASSVDES STSTDSVHTP AKIPPATARK SSSPASLYRM GSGSSVVLDS ENGVEAESRK LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAHRF RGRDAVTNFK ADTTLDNGDE IEFLNAHSKA EIVDMLRKHT YREELEQMKR NLHGKGNTKE TAFAAVRIAT GFKTAETLFE KAVTPRDVSV RLTLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNGQDQQ LYIGWKSKCE SDQDTGRVVV RLFGVDITSL KSQNDLVMKE ETEMLSLRCN KKQRLLVIKM GLFV // ID A0A078D3K4_BRANA Unreviewed; 723 AA. AC A0A078D3K4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC01g12840D protein {ECO:0000313|EMBL:CDX82834.1}; GN Name=BnaC01g12840D {ECO:0000313|EMBL:CDX82834.1}; GN ORFNames=GSBRNA2T00138182001 {ECO:0000313|EMBL:CDX82834.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX82834.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX82834.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031830; CDX82834.1; -; Genomic_DNA. DR EnsemblPlants; CDX82834; CDX82834; GSBRNA2T00138182001. DR Gramene; CDX82834; CDX82834; GSBRNA2T00138182001. DR OMA; CASAYEQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 339 440 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 339 440 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 80559 MW; 7F83FEB875704263 CRC64; MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CASAYEQGRF CDIFHQRASG WRCCESCGKR IHCGCIVSAP AFMLLDAGGI ECLTCARKKV SVGPNFRPPP PSFLFQSPIS EKFQDLSIDW NSSTRSYRPP NLSGPSIRQS DRGDCYEFNQ PTSKDKATAY STEKHRGMND LMGKLMSVNS NNHTNSILYN QKAGPNCKVP TCPNVNAAYP PLISLKEGPL VGAQRAFPVT TPVETNGHLG LGGRYLWHKA NSSPLSHLHN DLNNGADSPL ESKNWNFGIH LDTPGKYQVV PRYSPKIPYK NQVLQNLPNE SVSVVTPLFE KILSVSDAGR VGRMVLPKKC AEAFLPQISQ TDGVPLTVHD STGKEWTFQF RFWVNNNSRM YFLEGITPCI QSMQLQAGDT VIFSRADPEK KLIMGFRKAS VAQSSVQETE LNNNRESCTN GDAEPIDIHP PNGKKKSSMT TTRSKRQKVE KGELSELKLT WEEAQGFILP SPNLTPSIIT IEGIEFEEYE DAPIIGKPNT GFGSTCSANK GLLAEQDDEE AKDEAEGLLM SPKSTSKHPR HRNGCACIVC LQSPSGSSPK HGRRCSCTVC DTVRRRRETL LQRKKKQQQS EIENKAHKEM ESPNSDEERH QSVNNSGTTS KDYERHASPP SKAQIDLNFQ PEKDEESPLP RSKTTTKDKS LHHDEARSSS SAHNKLHVDF ADS // ID A0A078D4V9_BRANA Unreviewed; 243 AA. AC A0A078D4V9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC04g09240D protein {ECO:0000313|EMBL:CDX84162.1}; GN Name=BnaC04g09240D {ECO:0000313|EMBL:CDX84162.1}; GN ORFNames=GSBRNA2T00141192001 {ECO:0000313|EMBL:CDX84162.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX84162.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX84162.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031836; CDX84162.1; -; Genomic_DNA. DR EnsemblPlants; CDX84162; CDX84162; GSBRNA2T00141192001. DR Gramene; CDX84162; CDX84162; GSBRNA2T00141192001. DR OMA; LCPTSHD; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 243 AA; 28431 MW; 8D1281760A2BDC80 CRC64; MSINQYSSDF NYHHSLMWQQ QQHPHHHHQN NVVEEKEALF EKPLTPSDVG KLNRLVIPKQ HAERYFPLAA AAADAMEKGL LLCFEDEEGK PWRFRYSYWN SSQSYVLTKG WSRYVKEKQL DAGDVILFHR HRVDGGRFFI GWRRRGNSSS SSDSYRHLQS DASLQYYPHA GAQAVESQRG NSKTLRLFGV NMECQLDSHL SDPSTPDGST LCPTSHDQFH LYPQQHYPPP YYMVRFNIVY YFK // ID A0A078D6N1_BRANA Unreviewed; 385 AA. AC A0A078D6N1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=BnaA03g14600D protein {ECO:0000313|EMBL:CDX84770.1}; GN Name=BnaA03g14600D {ECO:0000313|EMBL:CDX84770.1}; GN ORFNames=GSBRNA2T00142063001 {ECO:0000313|EMBL:CDX84770.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX84770.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX84770.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031838; CDX84770.1; -; Genomic_DNA. DR EnsemblPlants; CDX84770; CDX84770; GSBRNA2T00142063001. DR Gramene; CDX84770; CDX84770; GSBRNA2T00142063001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 385 AA; 43643 MW; 7F87C08F44F3F417 CRC64; MAKKHFFQPL LPGFHSHLTI PVAFFSKHIQ GRNDQKTTAK LTSDAASEKT WEVKTEDGRR LTDGWKEFAL AHDLRVGDIL IFRQEKDMSF HVTLFGPSCC EIQYDSCLDD KNNIGKINSK KNNPKREEEC SSSDPSCFLA NVMPSTLRYD SLNLPVSFVR ANGLETRCGD IVLMNEKGRS WTLSLKQRQC GRSYITRGWR SFFSANGLKA GDFFTLKLIK RGGTLVLLHK SPSHRESKEN EGSEADDEIE SLSTESDSDE ESNQDEKSFI KRRISIWKAS SSPSQNSFVK LTLKPYNVIK CVLFLPKPFT DLHGITVGTK MSLLDKQGVK WSTKLRSEGK RIRMAGGWKD FFKANCVKTG ESVKLKLIWE EDTSCVLKFC SKVKP // ID A0A078D6N2_BRANA Unreviewed; 785 AA. AC A0A078D6N2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA03g13980D protein {ECO:0000313|EMBL:CDX84832.1}; GN Name=BnaA03g13980D {ECO:0000313|EMBL:CDX84832.1}; GN ORFNames=GSBRNA2T00142144001 {ECO:0000313|EMBL:CDX84832.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX84832.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX84832.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031838; CDX84832.1; -; Genomic_DNA. DR EnsemblPlants; CDX84832; CDX84832; GSBRNA2T00142144001. DR Gramene; CDX84832; CDX84832; GSBRNA2T00142144001. DR OMA; CNKPIHC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 292 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 590 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 292 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 785 AA; 86033 MW; 5850B794CC27A500 CRC64; MFEVKTGSKV CMNASCGSTS TVEWKKGWPL RSGSLADLCF RCGSAYETSL FCETFHLEQS GWRDCYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNCH QLNLNKRGEN PVVFSRLAMN SPHTNGESGI SIRSEADLFS QSQPLVNGDD KREEFMAHRG FANFMKPDNN TNNNNAGEMH EPSQPSLNMA LATLPYSPSF ATPVDGNKLM AAASQSHSHI GQCSASSILQ KPSKSVPGTP PGTSKSAQAR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNLNLNIVP LFEKTLSASD AGRIGRLVLP KACAEAYFPP ISQSEGIPLK IQDVRGKEWT FQFRFWPNNN SRMYVLEGVT PCIQSMMLQA GDTVTFSRVD PGGKLIMGAR KAAYTVDMQG CGLTNGTSNE DTSSSGVTEN PTSINASSQI PEELKGVPEH LSSPYGVGSS LKKSEMNGGR ICDDPSRVKD KKRTRTIGAK NKRLLLRSEE VRVTWEEAQE LLRPSPNAKP TVVVVEDHEF EEFDEPPVFG KRTILTSKPS GEQERWASCD DCTKWRRLPV DALLPAKWTC SDNVWDVNRC SCSAPEESLK DLENVLRAGK EYKKRRIQAA KTEEEPSGLD ALASAASAAV LGDALGGDSE VATTTRHPRH RVGCSCIVCI QPPSGKGRHK PTCGCTVCST VKRRFKTLMM RRKKKQLERD EIAAAAEAYE EHNNKEATEQ GETDENNGEK EGRIDLNSDP YNREDVEAEK EDTKGRECSG VADEVLGLTE LGGEAASCEE LKAAT // ID A0A078D6Z3_BRANA Unreviewed; 530 AA. AC A0A078D6Z3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC05g20090D protein {ECO:0000313|EMBL:CDX85046.1}; GN Name=BnaC05g20090D {ECO:0000313|EMBL:CDX85046.1}; GN ORFNames=GSBRNA2T00142488001 {ECO:0000313|EMBL:CDX85046.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX85046.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX85046.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031839; CDX85046.1; -; Genomic_DNA. DR RefSeq; XP_013655635.1; XM_013800181.1. DR EnsemblPlants; CDX85046; CDX85046; GSBRNA2T00142488001. DR GeneID; 106360567; -. DR Gramene; CDX85046; CDX85046; GSBRNA2T00142488001. DR OMA; SECGGRW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 158 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 362 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 430 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 362 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 430 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 59674 MW; 5701F9BA0053BCB3 CRC64; MADDQSLRSP ITPHFFQPLL PGFHTHLNIP VAFFLKHVQG LSNDHIKTAK LTTDASTKTW LVKVDGVRLT DGWEDFAVGH DLRIGDITIF RHEGEMVFHV TAFGPSFCDI QYTSASSHNI NDDSQDQTNN TENSSGEKRK RVKKKPRRKE ESSSDHSHFM AHVSPSSLRF DRLYVPISFS RSNGLDNMSG KEIVLLNQEG RSWNLNITYT KASVQTLVGP GWRRFCAENG MNQGHHYTFK LVGKSAPPVI RLSLAEPAPE PSLHHSYYVG SVSSNSLRTD KLYIQRKFVN ENGLKGLSEI ILKSECGGRW SLGLRYYKSL DHTYLGPGWK TFCQVNGIKT GDSFMFKVVE TGDKPVLLLC SYNHGKTPLE CSEESDDVNS LSSDTSSGES QESEEENFED EGSSEESFEM VKRENSSRCR ASSSYSQDRF VKLTLTPRAL KTYKLMLPLG FTRVNGINKP GKITLLDKDG VKKQVVDLLD QNRNIGIMRL GKGWREFCDA HGVKVGQSFL LELIWEDEEA NPVLKFCTKL // ID A0A078D7H3_BRANA Unreviewed; 536 AA. AC A0A078D7H3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC05g20100D protein {ECO:0000313|EMBL:CDX85045.1}; GN Name=BnaC05g20100D {ECO:0000313|EMBL:CDX85045.1}; GN ORFNames=GSBRNA2T00142487001 {ECO:0000313|EMBL:CDX85045.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX85045.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX85045.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031839; CDX85045.1; -; Genomic_DNA. DR RefSeq; XP_013655632.1; XM_013800178.1. DR EnsemblPlants; CDX85045; CDX85045; GSBRNA2T00142487001. DR GeneID; 106360566; -. DR Gramene; CDX85045; CDX85045; GSBRNA2T00142487001. DR OMA; DCVEMEK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 156 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 365 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 535 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 156 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 438 535 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 536 AA; 60317 MW; 3B3F26E2AEBE959A CRC64; MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TDASAKTWLV KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID DSQDQANNTG NSSGEKRKRV KKNPRTKEES SSDHSHFVAH VSPSSLSCDR LYVPKGFAKS NGLDNMSGKE IVLLNEEGRS WNLNITYNES GMHTFVRPGW RSFCAENGMN QGHHCTFELV RKSAPPVLRL SRAEHDPKPA PESSLHHSYY VGSVSSNSLR TDKLYLQMKF VAANGLKKGF SEIILKNEWG GRWSVGLRHY ASSNRTYLGP GWKTFCQVNG IKAEDSFMFK LVETGDKPVL LLCTSNRGKT PLECSEDSDD VNSLSSDTSS GDDSGEESQE SEEESLEDDS SSKDCVEMEK RKRSLRCKYP SSYSKHRFVR LTLTQNALKT SVKHLPLGFT RVNGINKPRK IMLLGKDGVK KWVVDLLKNK STGTMRIRKG WRELCDAHGV KVGESFLLEL IWDEEAIPVL KFCTKL // ID A0A078D8J4_BRANA Unreviewed; 340 AA. AC A0A078D8J4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA02g03860D protein {ECO:0000313|EMBL:CDX85427.1}; GN Name=BnaA02g03860D {ECO:0000313|EMBL:CDX85427.1}; GN ORFNames=GSBRNA2T00143116001 {ECO:0000313|EMBL:CDX85427.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX85427.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX85427.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031842; CDX85427.1; -; Genomic_DNA. DR EnsemblPlants; CDX85427; CDX85427; GSBRNA2T00143116001. DR Gramene; CDX85427; CDX85427; GSBRNA2T00143116001. DR OMA; DKFVQHY; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 299 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38923 MW; 68E66396E0D4E883 CRC64; MVRNGGFGQI MEEGDSPGFF KILRREDLSS QLIRMIPHDI IRSISDDSSS FKMVLKVPWG SSWTVKISKN PSFHYMEDDG WNQFVNNNAL GENEYLTFTH EGNMRFNVNI YGPDGTEMLE PRESATIASS SGMNKREQRE RVYKHVKEEI VSSSESSYYS IKRAQGKKQE PNLGKKKAEE SKKNKKSMKK KKKVDNDLEE GTSSLVPEFS ITIRKSHLVF LGVPKVFVEM HMAKKTKWFK IRPEGKDSWD VLFLVTDAQS RFSAGWSRLS RELGLVVGDV CTFKLIKPTE MLVKVSRHDD EDDDIEEDDD SDEEEAEDAD EDDSDDEDAE DEDDADKSED // ID A0A078D8W1_BRANA Unreviewed; 1020 AA. AC A0A078D8W1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC08g18670D {ECO:0000313|EMBL:CDX83778.1}; GN ORFNames=GSBRNA2T00139521001 {ECO:0000313|EMBL:CDX83778.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX83778.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX83778.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031834; CDX83778.1; -; Genomic_DNA. DR RefSeq; XP_013728152.1; XM_013872698.1. DR EnsemblPlants; CDX83778; CDX83778; GSBRNA2T00139521001. DR GeneID; 106431859; -. DR Gramene; CDX83778; CDX83778; GSBRNA2T00139521001. DR OMA; LWASQTQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 892 985 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1020 AA; 113085 MW; 9387B6B658505F23 CRC64; MKAPSNGFHP NSTEGEKKPI NSQLWHACAG PMVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSSHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLLAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLVMRFRMMF ETEDCGVRRY MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM GMQQNNTLSA GYTTTQLPSA YNLPNNFAAN DPSKLFNFQS PNLSPVNSQF NKPNMVSSHI SQQMQVQPAM VKSQQQEQQK VQMSHQQLQQ GVFNAGCANN GVSVVSCQNQ STGFSQSELQ QQSMLSNGSA KMNNQNKGSS QMTLQELQFQ QQMELHNSSQ NQQEQSSMHS LQQNPQQLQM QQQPSQPSPS QKLQLQLLQK LQQQQQSIPP VSSSLQPQLS AALQQTQSHQ LQQLLSSQNQ QPFSASTFMQ PPQVQLSHHQ QQGHMNNKPL VAAGRRSHSG HTDGEAPPSC STSPSAKNTI HDNISPTNFL SRNQQQGQAV SVPEPDPVQE LYTKTESRNN LRSAADQINV STAGTTYCPD AVGTAQQQQQ AFPLPSFGDC QRNNLAFAGN LEAVTTSDAL YSQKDFQNLV PTYGNAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNDSGIMNG GGLWPNQAQR MRTYTKVQKR GSVGRSIDVT RYSGYEELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATNQVCSETD SGNAWKVHYE DTSAAASFNR // ID A0A078D9Q3_BRANA Unreviewed; 354 AA. AC A0A078D9Q3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC05g20560D protein {ECO:0000313|EMBL:CDX84999.1}; GN Name=BnaC05g20560D {ECO:0000313|EMBL:CDX84999.1}; GN ORFNames=GSBRNA2T00142419001 {ECO:0000313|EMBL:CDX84999.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX84999.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX84999.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031839; CDX84999.1; -; Genomic_DNA. DR EnsemblPlants; CDX84999; CDX84999; GSBRNA2T00142419001. DR Gramene; CDX84999; CDX84999; GSBRNA2T00142419001. DR OMA; KQTMINA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 179 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 179 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 39258 MW; 63131926B5360759 CRC64; MDNSCIDDST SNTSGSLSTS TPSAKKKLSP PPPPPATMRL YRMGSGGSSV VLDSENGVET ESRKLPSSKF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE EEAAASYDIA ARRFRGRDAV TNFKSPAIDG TDAESAFLEA HSKAEIVDML RKHTYADELQ QSKRKFLDGN GKRAREVLFE KAVTPSDVGK LNRLVIPKQH AEKHFPLPAM TTATVVAAMT PSPTKGVLIN LEDRMGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVCFERSTG PDRQLYIDWK VQSGTEEITP VQSVVRLFGV NIFNATTNAK PNDVAVECGG KKRSREVDLF ALGCSKKQTM INAL // ID A0A078D9W1_BRANA Unreviewed; 552 AA. AC A0A078D9W1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC05g20110D protein {ECO:0000313|EMBL:CDX85044.1}; GN Name=BnaC05g20110D {ECO:0000313|EMBL:CDX85044.1}; GN ORFNames=GSBRNA2T00142485001 {ECO:0000313|EMBL:CDX85044.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX85044.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX85044.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031839; CDX85044.1; -; Genomic_DNA. DR EnsemblPlants; CDX85044; CDX85044; GSBRNA2T00142485001. DR Gramene; CDX85044; CDX85044; GSBRNA2T00142485001. DR OMA; SCEDDSK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 284 380 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 453 551 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 284 380 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 453 551 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 552 AA; 62151 MW; 948C71A9CA64FC39 CRC64; MKCSRMAYDQ SLHSPNNPHF FQPLLPGFHT HLNIPVAFFL KHVQGLSNDH IKTAKLTTDA STKTWLVKVD GVRLTDGWED FAVGHDLRIG DITIFRHEGE MVFHVTAFGP SCCDIQYTSA SSHNISDDSQ DQTNNTDFFF NCTGNSSGER RKRVKKNPRT KEDSSSDHSQ FVAHVSPSSL SSDRLYIPTG FARSNGLNNM SGKQIIVLLN EEGRSWNLNM TYNKVGMQTF VRPGWRRFCA ENGMKKGHQY TFKLVRKSAP PVIRLSRAEH ESKLAPESSL HHSYFMGSVS SNSLTTDKLY LQRQFVTTNG LEKGLSEITL KNEWGGSWIL GLRHCEPHNH TYLGPGWKTF CQANGIKAED SFMLKLVGTG DTPVLLLCSS NRGKTPLECS EDRDDVNSVS SDTSCEDDSK EESQESDKES IEDEDSSRQC IVMEKEKNSL RCICSSPYSK HRFVRLTLTQ SALKTSVLYL PLAFTRMNGI NKPRKIMLLG KDGVKKQVVD LLKNKSSGTM RIGKGWREFC DAHGVKVGES FQLELFREDE ESIPVLKFCT TT // ID A0A078DB39_BRANA Unreviewed; 110 AA. AC A0A078DB39; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=BnaA06g31870D protein {ECO:0000313|EMBL:CDX86470.1}; GN Name=BnaA06g31870D {ECO:0000313|EMBL:CDX86470.1}; GN ORFNames=GSBRNA2T00144621001 {ECO:0000313|EMBL:CDX86470.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX86470.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX86470.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031845; CDX86470.1; -; Genomic_DNA. DR EnsemblPlants; CDX86470; CDX86470; GSBRNA2T00144621001. DR Gramene; CDX86470; CDX86470; GSBRNA2T00144621001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 59 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 53 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12754 MW; CDA3E6F43531DEFD CRC64; MEESQQEPQE GGKSSYVQWS PQENNTLINL LLDCITAVHG FGFLVSLLSL AQVLPIAFTK LNKIRMAKRM SLLDKHGVKW SIKLWFEKER KRMRLVGGWK EFYDANDVKI // ID A0A078DDD5_BRANA Unreviewed; 828 AA. AC A0A078DDD5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC09g05450D {ECO:0000313|EMBL:CDX87230.1}; GN ORFNames=GSBRNA2T00146165001 {ECO:0000313|EMBL:CDX87230.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX87230.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX87230.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031849; CDX87230.1; -; Genomic_DNA. DR EnsemblPlants; CDX87230; CDX87230; GSBRNA2T00146165001. DR Gramene; CDX87230; CDX87230; GSBRNA2T00146165001. DR OMA; HESAYTD; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 702 784 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 828 AA; 92424 MW; B106E6B01AAA8024 CRC64; MTSSEAINVA VSGEGQKGHS NRVVDAEAAL YRELWHACAG PLVTVPRQDD RVFYFPQGHI EQVEASTNQA AEQQMPLYDL PSKILCRVIN VDLKAEVDTD EVYAQITLLP EAIQDENAIE KEAPPPPPPR FQVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD LHANEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNVSSSVIS SHSMHLGVLA TAWHAISTGT MFSVYYKPRT SPSEFIVPFD QYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDS DPTRWAKSKW RSLKVRWDET SSIPRPDRVS PWKLEPALAP PALSPVTMPR PKRPRSNIAP SSHDSSMLIR EGSAMGNKDP LPASGFSRVL QGQEHPTLRT KHTETVECDA PESSVVWQSS ADDDKVDVVS ASRRYENWMS SGRHESAYTD LLSGFGANVD PSPGHQIPFY DHSSLPSVAA NKFIGDRDGK FDYFANQWQM MHSGLSLTLH EFPKIPAASD TSFQGRGNAK YGEYPVLHSL TTENAGGNWP IRPRAVNYFE EAVQAHAQAQ AREHVTKRPE MVEETAKSRD GNCRLFGIPL VNNVNGTDST MSPRNNFNDT AGLTQMTSPK VQDLSDQSKG SKSTNDQREQ GRPFQANHPH PKDVHTKTHS SRSCTKVQKQ GIALGRSVDL SKFQNYKELI AELDRMFEFN GELMAPKKDW LIVYTDDEND MMLVGDDPWQ EFCGMVRKIS IYTKEEVRKM NPGTLGCRSE EEAVVGEGSD PKDAKSASNP SLSSAGHS // ID A0A078DDM6_BRANA Unreviewed; 526 AA. AC A0A078DDM6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA07g35020D protein {ECO:0000313|EMBL:CDX87371.1}; GN Name=BnaA07g35020D {ECO:0000313|EMBL:CDX87371.1}; GN ORFNames=GSBRNA2T00146339001 {ECO:0000313|EMBL:CDX87371.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX87371.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX87371.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the syntaxin family. CC {ECO:0000256|SAAS:SAAS00569153}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031850; CDX87371.1; -; Genomic_DNA. DR EnsemblPlants; CDX87371; CDX87371; GSBRNA2T00146339001. DR Gramene; CDX87371; CDX87371; GSBRNA2T00146339001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0005484; F:SNAP receptor activity; IEA:InterPro. DR GO; GO:0006886; P:intracellular protein transport; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR006012; Syntaxin/epimorphin_CS. DR InterPro; IPR000727; T_SNARE_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF05739; SNARE; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00397; t_SNARE; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS00914; SYNTAXIN; 1. DR PROSITE; PS50192; T_SNARE; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|PROSITE-ProRule:PRU00202, KW ECO:0000256|SAAS:SAAS00569180}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 230 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 498 523 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 137 199 T-SNARE coiled-coil homology. FT {ECO:0000259|PROSITE:PS50192}. FT DOMAIN 360 451 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 360 451 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 526 AA; 59126 MW; 0DA34499A2D120B0 CRC64; MASSSDAWMR EYNEALKLSE DINGMMSERN SSGVTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KANQVASALN MSNFANRDSL LGPETKPDDA MNRVSGMDNQ GIVGFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIEDLDY HVDVTDSRLR RVQKSLAVMN KNMKGGCSCM SMLLSVLGIV GLALVIWLLV KYLKEEMVES EYEQIRLKRV EENKKRMIEL NLNNLSQSLR LSSPSPKPSP AKARTPRTPV DSSEVRRSSR AKNPPPSYKE FGLEPLERPR RSYQRRDLLN RVYASDDARV YAIERAEALQ SSLEPEFPSF IKPMLQSHVT GGFWLGLPRQ FCHTHLPKYD EMITLVDENE DESVTKYLAD KNGLSGGWRG FAIDHQLVDG DAVVFHLINP TTFKVYIVRV NDESNNGSGG SNEKELAIKP NKNQEEKNVS EVPPLSNSGK RKRRGNNIGT NLSLVNLLLA IALMFKSCLL IGAGRK // ID A0A078DEY3_BRANA Unreviewed; 850 AA. AC A0A078DEY3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC03g52090D {ECO:0000313|EMBL:CDX86939.1}; GN ORFNames=GSBRNA2T00145752001 {ECO:0000313|EMBL:CDX86939.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX86939.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX86939.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031848; CDX86939.1; -; Genomic_DNA. DR EnsemblPlants; CDX86939; CDX86939; GSBRNA2T00145752001. DR Gramene; CDX86939; CDX86939; GSBRNA2T00145752001. DR OMA; SDGRMQM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 724 808 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 850 AA; 94678 MW; 905B90B865AC1EC8 CRC64; MASSEVSMKG NRGRGENFSS AGYSDPTVAG EAQKTQSNRS VAAERVVDPE AALYRELWHA CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEA DTDEVYAQIT LLPEPVQDEN SIEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHASEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK PRTSPSEFIV PFDQYTESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK SKWRSLKACV RWDETTSIPR PDRVSPWKIE PALSPPALSP VPMPRPKRPR SNLASSTPDS SMRIREGSSK ANMDPLPASG LSRVLQGQEY PTLRTKHVES VECDAPENSV VWQSSTDDDK VDVISASRRY ENWISSGRHG PTCTDLLSGF GTNIEPPHGH QIPFYDRLSS PPSVAARKIL SDQDGKFEYL ANQWMMHSGL SLKLHESPKV PAASDASFQG IGNPNYGEYA LPRAVTTENA AGNWPIRPRA LNYFEEAVHA QAREHVTKRP AVVQEEAAKP RDGNCRLFGI PLVNNVNGTD TTLSQRNNLN DPAGPTQMAS PKVQDLSDQS KGSKSTNDHR EQGRPFPVSK PHPKDVQTKT NSCRSCTKVQ KQGIALGRSV DLSKFQNYEE LVTELDRLFE FNGELMAPKK DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK IFIYTKEEVR KMNPGTLCCR NEEEPVVGEG SDAKDAKSAS NPSLSSAGNS // ID A0A078DFZ2_BRANA Unreviewed; 270 AA. AC A0A078DFZ2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA06g27720D protein {ECO:0000313|EMBL:CDX88181.1}; GN Name=BnaA06g27720D {ECO:0000313|EMBL:CDX88181.1}; GN ORFNames=GSBRNA2T00147640001 {ECO:0000313|EMBL:CDX88181.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX88181.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX88181.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031854; CDX88181.1; -; Genomic_DNA. DR EnsemblPlants; CDX88181; CDX88181; GSBRNA2T00147640001. DR Gramene; CDX88181; CDX88181; GSBRNA2T00147640001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 30374 MW; 07B48A87BC9FD480 CRC64; MSGKSVYNLL QDNVSKPRFC KSLSSGETWS SKSVRIIPEE FVRSAPGAFE HRVVFSVRWG NSWQLWLQRD KNGLFMEEED WDEFVSDNFL GPNDVLLFTH ADTMFIEVQI YKQASYHLKE ITSAPLQADP QAEVVTPMPQ TSPPAPAPAS IKTIHIQAGA HVNSPEQYLS NPSNPFFVKK LGKKIDVLYV SHLVTEKYGL QFGPHNSTMF YLLPNEKIEA NTKIYGGCAC FNGWAAICRK YKLKQGDAVV CELERSGGVV TAVRLHFPNE // ID A0A078DHE4_BRANA Unreviewed; 530 AA. AC A0A078DHE4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC06g38360D {ECO:0000313|EMBL:CDX88392.1}; GN ORFNames=GSBRNA2T00147919001 {ECO:0000313|EMBL:CDX88392.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX88392.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX88392.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031855; CDX88392.1; -; Genomic_DNA. DR EnsemblPlants; CDX88392; CDX88392; GSBRNA2T00147919001. DR Gramene; CDX88392; CDX88392; GSBRNA2T00147919001. DR OMA; IDPKIWR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 57805 MW; 5A3D72ADACA5A302 CRC64; MSPPSAIADV HRVIDPKIWR ACAGASVQIP ALFSRVYYYP QGHVEHCCPS SSAVTTSPIA CVVSSIDLLA DPITDEVFAH LALLPVAAAA AQDQFQFPPQ SRFEEDGESE KVVTFAKVLT ASDANNGGGF SVPRYCADSV FPPLDFQADP PVQKLFITDV HGGVWDFRHI YRGTPRRHLL TTGWSKFVNS KKLICGDSVV FMRKSVHEMF IGVRRAPISN KSGGGSYYGD EVGMGKLTAE AVSEAIGKAS RGLPFEVVYY PTAGWSEFVV RAEDVEASTN VYWTPGTRVK MAMETEDSSR ITWFQGIVSA TFQETWKQLQ QITWDEPEIL QNLKRVNPWQ VEVVTASSTQ LHATYPPPTK RPKYPHASSG VLSGEEGEMI YYGRGQQAMD PIPYGYTYTT VPAGMQGARH YEFGSYNNST GFIGENAHPE FNFFSPLPGL GRVSTQVMSF GSPPSDDLSP NSNTTNVSSG NDAAGNNRCI SFQLFGKVIN VQEPAESGVA ESSLCEEDGS KESSDNEVPN EAQLLGRGGR // ID A0A078DHZ7_BRANA Unreviewed; 269 AA. AC A0A078DHZ7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC06g39960D protein {ECO:0000313|EMBL:CDX88552.1}; GN Name=BnaC06g39960D {ECO:0000313|EMBL:CDX88552.1}; GN ORFNames=GSBRNA2T00148114001 {ECO:0000313|EMBL:CDX88552.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX88552.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX88552.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031855; CDX88552.1; -; Genomic_DNA. DR EnsemblPlants; CDX88552; CDX88552; GSBRNA2T00148114001. DR Gramene; CDX88552; CDX88552; GSBRNA2T00148114001. DR OMA; HLPKHDE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 269 AA; 30570 MW; D6DB02EBBA588076 CRC64; MVESKYEQIR LKRVEENKKR MIELNLNKLS HSLRLSSPSP KPSPAKARTP RTPVDSSEVR RSSRAKNPPP SYKEFGLEPL ERPRRSYQRK DLLNRVYASD DARVYAIDRA EALQSSLEPE FPSFIKPMLQ SHVTGGFWLG LPRSFCHTHL PKYDEMITLV DENEDEAVTK YLADKNGLSG GWRGFAIDHQ LVDGDAVVFH LINPTTFKVY IIRVNDESNN GSGGSNEKEL VIKPNKNQEE KNVSEVPPLS NSGKRKRRGN NICHKSLSC // ID A0A078DL81_BRANA Unreviewed; 344 AA. AC A0A078DL81; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA10g00810D protein {ECO:0000313|EMBL:CDX90001.1}; GN Name=BnaA10g00810D {ECO:0000313|EMBL:CDX90001.1}; GN ORFNames=GSBRNA2T00150499001 {ECO:0000313|EMBL:CDX90001.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX90001.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX90001.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031861; CDX90001.1; -; Genomic_DNA. DR EnsemblPlants; CDX90001; CDX90001; GSBRNA2T00150499001. DR Gramene; CDX90001; CDX90001; GSBRNA2T00150499001. DR OMA; NMECGND; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 38955 MW; 35EBA72C6E114200 CRC64; MDLSLAPTSS DQEQDKDQEL ASNIGASSSS GTANNTNFPM MMIPPPEKEH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DSTNNQNGTL LNFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG IGDESQRSKL YIDWRHRPDM SLVQTHQFGN YGFNFNFPTT SQYSNRFHPL PEYNSVPIHR SLNIGNHQRS YYNNQRQEFV GYGYGNLAYY TGSPLDQRSI VGSEPLVIES VPVVPGRLPP VMMLPPPLPP PPSTAGKRLR LFGVNMECGN DYDQHEESLL VPRGEMGASS SSALRFNLSN DHDDGDDDQF AKKGKSSFSL DFSP // ID A0A078DM32_BRANA Unreviewed; 852 AA. AC A0A078DM32; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA08g17390D {ECO:0000313|EMBL:CDX90245.1}; GN ORFNames=GSBRNA2T00150811001 {ECO:0000313|EMBL:CDX90245.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX90245.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX90245.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031862; CDX90245.1; -; Genomic_DNA. DR EnsemblPlants; CDX90245; CDX90245; GSBRNA2T00150811001. DR Gramene; CDX90245; CDX90245; GSBRNA2T00150811001. DR OMA; HNIGETG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 852 AA; 94106 MW; 52BD2C7CDF20C43A CRC64; MRLSSAGFNP HPHPHEVTGE KRVLNSELWH ACAGPLVSLP PLGSRVVYFP QGHSEQVAAS TNKEVDAHTP NYPSLQPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNAQE QKDSYLAAEL GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LMARDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RAHRPQTVMP SSVLSSDSMH LGLLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGICDLDPAR WANSHWRSVK VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPSGLPSFHG LKEDDMGMGM GMSSPLMWDR GLQSMNFQGM GVNPWMQPRL DASGLLGMQN DAYQAMAAAA LQDMRGIDPA KAAASLLQFQ SPSGFSMQPP SLVQPQMLQQ QLSQQHQQQL SQQQQQVVDN HNLSASSAAM SQSNTSLLQS MTPLCHQQSF SDTNGGNNPI TQLHTLLSNF PQDESSQLLN LTRTNSAMTS SGWPSKRPAI DSSFQHSTAV NNNQSVMEQL GQSHTSNVSP NAVSLPPFPS GQEENHSDPH SHLLFGVNID SSSLLIPNGM SNLRSIGIEG GDSTTLPFTS STFNNEFSGT MTTPSSCIEE PGFLQPSENQ QSNTFVKVYK SGSFGRSLDI TKFSSYNELR SELARMFGLE GQLEDPVRSG WQLVFVDREN DVLLLGDDPW PEFVSSVWCI KILSPQEVQQ MGKRGLELLN SAPSSDNVDK VPSNGNCDDF GNRSDPRSLG NGIASVGGSF NY // ID A0A078DPQ6_BRANA Unreviewed; 440 AA. AC A0A078DPQ6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC02g27260D protein {ECO:0000313|EMBL:CDX91315.1}; GN Name=BnaC02g27260D {ECO:0000313|EMBL:CDX91315.1}; GN ORFNames=GSBRNA2T00152581001 {ECO:0000313|EMBL:CDX91315.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX91315.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX91315.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031866; CDX91315.1; -; Genomic_DNA. DR RefSeq; XP_013644113.1; XM_013788659.1. DR EnsemblPlants; CDX91315; CDX91315; GSBRNA2T00152581001. DR GeneID; 106348842; -. DR Gramene; CDX91315; CDX91315; GSBRNA2T00152581001. DR KEGG; bna:106348842; -. DR OMA; ANTIFRS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 440 AA; 49832 MW; 5FEC753EE853B539 CRC64; MASTDSLPRF FKVFISHFSS DSMLIPISYY DELPRHLPKT VILQGTGGCL WKVAMRLKQE EEEVYLEQGW PKFVKDNALV DGDFMTFVYN GDNIFEVSIY GLDGCKQARA MAEEEEEGKD SICALSSDDT EDTNAESESA NTVQRSNDKG KAKVEADDDE EEEDSVYSLS NSKDTDTGTS SEFEMANTIF RSKTKGKSKE EVIKEESDGK EDSDHSLNSE VKETDTGSES RIPKNKGKKK KEVVESSDSD YAEDFGRLDL DLEEDSTSSD SSYAPDSDED TATHVKRKVV TKGSQGKSKV IKDVAEVGDT SCAVERVPKT REKVKAIIEN PEVYLDDPTN IHFETGVKNR KYELLVHAQL VKDYCLRFKD YIYYLDPKGK LEAKTAKWKD QRVCIKKWVK ICDRNKLKKQ DRVVCELLRN KDLVYAVKIH IIRGKHLVSV // ID A0A078DSP4_BRANA Unreviewed; 212 AA. AC A0A078DSP4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA05g21160D protein {ECO:0000313|EMBL:CDX92291.1}; GN Name=BnaA05g21160D {ECO:0000313|EMBL:CDX92291.1}; GN ORFNames=GSBRNA2T00154015001 {ECO:0000313|EMBL:CDX92291.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX92291.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX92291.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031871; CDX92291.1; -; Genomic_DNA. DR RefSeq; XP_013749351.1; XM_013893897.1. DR EnsemblPlants; CDX92291; CDX92291; GSBRNA2T00154015001. DR GeneID; 106451913; -. DR Gramene; CDX92291; CDX92291; GSBRNA2T00154015001. DR KEGG; bna:106451913; -. DR OMA; ASACETN; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 24239 MW; 564A1BEE96DC1543 CRC64; MVTTRQKKAG VTTASHRRPP SEPDSSVKKF WNVVLPSTMK RNMMMIPPKF VNLQGSTLSE FVTVETPVGF RRSIKLKRIG EEIWLHGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFH VSACEIDYPL DEVHISDSDS DDDVMDVTDE GFRGTQATRR NDQSVNGGGI EHNRKKRARD DEFDKILNDL DGMKLLEEEE DGKRVFRGQQ FF // ID A0A078DU45_BRANA Unreviewed; 1040 AA. AC A0A078DU45; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA10g14760D {ECO:0000313|EMBL:CDX92437.1}; GN ORFNames=GSBRNA2T00154204001 {ECO:0000313|EMBL:CDX92437.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX92437.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX92437.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031872; CDX92437.1; -; Genomic_DNA. DR EnsemblPlants; CDX92437; CDX92437; GSBRNA2T00154204001. DR Gramene; CDX92437; CDX92437; GSBRNA2T00154204001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 913 1006 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1040 AA; 114044 MW; 5EDC27D3578462C8 CRC64; MKAPSSNGVS PNPLEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMTLQ PVNKYDRDAL LASDMGLKIN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIFRGQPKRH LLTTGWSVFV STKRLFAGDS VLFVRDGKGQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDGTDMECA LKRAMPWLDN GLEMKDPSST IFPGLSLVQW MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDQSK LVSFQTPPGG ISSSNLQFNK PNLQGAMSQL PQPPTTLSQQ QQLQQLAQQL QSHTHPQPQQ SPPHPQPQSH PQQLQPHKLQ QFQLPQNQLY NGQPAVQQRQ SQQASMHHLQ SQVVSGSIAS SVIAPPSSSL NQSFQQQQQQ STQLQHTHRH IGASTSQSSV IETSKSSSNL MSIPPQDTQF SRQMEQQQPP GLFQLLQRLQ QQQQQQFLSP GSSSLPSQLL HQQLQSQQFP QLPSPSQVQQ FPSSCTNTGL PSLQPPQTLV SRPQDKQNPP VGGGAKAYSG ITDGGDAPSS STSPSTNNCQ ISSSTFLNRS QSGPAILIPD PAADMSGSLV QDLYSKSDMR LKHELVSQQK PKASLTDHQL EANSLFGGGA NVENGFVPDT LLSRGYDSQK DLQNMLSNYG GVTNDIGTEM STSAVRTQSF GIPNVPAISN DLAVNDAGVL GGGLWPTQTQ RMRTYTKVQK RGSVGRSIDV NRYRGYDELR HDLARMFGIE GQLEDPLTSD WKLVYVDHEN DILLVGDDPW EEFVNCVQSI KILSSAEVQQ MSLDGNFAGL PATNQACSGG DNGNGWRGQY DDNSATSFNR // ID A0A078DUJ2_BRANA Unreviewed; 295 AA. AC A0A078DUJ2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=BnaA05g22980D protein {ECO:0000313|EMBL:CDX92109.1}; GN Name=BnaA05g22980D {ECO:0000313|EMBL:CDX92109.1}; GN ORFNames=GSBRNA2T00153798001 {ECO:0000313|EMBL:CDX92109.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX92109.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX92109.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031871; CDX92109.1; -; Genomic_DNA. DR EnsemblPlants; CDX92109; CDX92109; GSBRNA2T00153798001. DR Gramene; CDX92109; CDX92109; GSBRNA2T00153798001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 34417 MW; 37B7033B25418BD0 CRC64; MGWNGRIKEE RKNLSFFKIF QSADLSSECM RALPYNFMQN LSKEDFSYKM VIRAEWGSSW EVDVSKNPRF YYVEKSGWNQ FVSDNALGDN EFITFTHKGS MSFNVNIYGK NGKEIVTPRK PLTATPLSGV KKEEGERSYK DVKKEEETCE SMDGVEVEET TKKAYKTSKK KKKKKSKKLK TLKKKKIKTV KKGVPEFEIT IRKSYLKFLL LPRVFEEEHI PGESMEYTIH HSEMKCSWNV LCLVRENRTV FSSGWSRLAR EFPLKVGDRC TFKLIKPTEF VLITKKSRKE ITVIG // ID A0A078DX84_BRANA Unreviewed; 718 AA. AC A0A078DX84; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA03g37510D protein {ECO:0000313|EMBL:CDX93029.1}; GN Name=BnaA03g37510D {ECO:0000313|EMBL:CDX93029.1}; GN ORFNames=GSBRNA2T00154921001 {ECO:0000313|EMBL:CDX93029.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX93029.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX93029.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031874; CDX93029.1; -; Genomic_DNA. DR RefSeq; XP_013657045.1; XM_013801591.1. DR EnsemblPlants; CDX93029; CDX93029; GSBRNA2T00154921001. DR GeneID; 106361788; -. DR Gramene; CDX93029; CDX93029; GSBRNA2T00154921001. DR KEGG; bna:106361788; -. DR OMA; WLTSNRE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 570 672 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 570 672 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 718 AA; 78994 MW; 6FFB4B4624F18D98 CRC64; MKTLHVAANG GDLAEGCGIL AGDADEAVLM DGMGEVGREI WSLDDHGGDG HGHREDDDII VHHDPSMFYG DLPTLPDFPC MSSSSSSSTS PAPLNAIVSS ASSSSAASSS TSSAASWAIL KSDGEDPTPN QNQYASGNCD VESSAALQST ASMEIQLDNT QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFNQD EDTQNLNLMD QTLEREDKIV VPMLENNNNN NNSGGDMQVM NPSLEQEDDL AAVFLEWLKN NKETVSADDL RKVKIKKATI ESAAKRLGGG KEAMKQLLKL ILEWVQTNHL QRRRTTNNNN NLSYQQDPFQ NPNLIPPSDQ TCFSPSTWVP PPTQPPPPQQ PAFVSDPGYG YMPAPNYPPQ EYLPLLESPP TWPPPQSGPM PLQQFTMPNP QYTPFQDPGG GFTGYNMNPY QYPYLPSSGQ MRDQGLLRLC SSATKEARKK RMARQRRFLS HHHRHNNNNN QQNQTQIGEV CGAVDPQLNH VPTTATGGTW MYWPNVPAMP PPVSSSQLPA METQLPTMDR AGSSSVMPRQ QVVPDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISLAME DIGTSRVWNL RYRFWPNNKS RMYLLENTGD FVKTNGLQEG DFIVIYSDVK CGKYLIRGVK VRQPAGQKSE APSSSAAVTK RQSKSQRSIN NNSPSANIVA SPTSQAVK // ID A0A078DY29_BRANA Unreviewed; 388 AA. AC A0A078DY29; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA05g22290D protein {ECO:0000313|EMBL:CDX92178.1}; GN Name=BnaA05g22290D {ECO:0000313|EMBL:CDX92178.1}; GN ORFNames=GSBRNA2T00153879001 {ECO:0000313|EMBL:CDX92178.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX92178.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX92178.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031871; CDX92178.1; -; Genomic_DNA. DR RefSeq; XP_013686587.1; XM_013831133.1. DR EnsemblPlants; CDX92178; CDX92178; GSBRNA2T00153879001. DR GeneID; 106390627; -. DR Gramene; CDX92178; CDX92178; GSBRNA2T00153879001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 223 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 351 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 223 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 351 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 388 AA; 44247 MW; 03001E41568AADAF CRC64; MKRKKLPERE EIHETQSKKS SFSKSLSPGQ NWKSKSMRII PEEILRSNPE AFEHRVVFTV PWNNSWQLWL QGDKNCLFMI KEDWNEFVDD NLLASDDTLH FTHQGTMYFQ VRIFKKDGKE ILSAPLEVEP PHQEPTTVSA SGGGRQSFAH VENPERYLLN PNNPYFEKTL TKTNTALYVS TPVVKKYELE FGPRNSSMHF LLPDGNKLEG FNKIYSGLHA FLGWANVCQK YNLKQGDTVV CEFELSGRVV TAVRVHFVTA SNSASGRQTS RGRESFDHVE SPERYLFNPN NPYFEKTLTK TNSVLYVSPP LIKKYGLEFG PHSSSIDFLL PDGSKMEGFT KSYSGLYGFL GWAAVCQKYN LKPGDTVVCE FELSRGVVSA VRVHFVNE // ID A0A078DYE7_BRANA Unreviewed; 346 AA. AC A0A078DYE7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA05g21140D protein {ECO:0000313|EMBL:CDX92293.1}; GN Name=BnaA05g21140D {ECO:0000313|EMBL:CDX92293.1}; GN ORFNames=GSBRNA2T00154017001 {ECO:0000313|EMBL:CDX92293.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX92293.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX92293.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031871; CDX92293.1; -; Genomic_DNA. DR EnsemblPlants; CDX92293; CDX92293; GSBRNA2T00154017001. DR Gramene; CDX92293; CDX92293; GSBRNA2T00154017001. DR OMA; CVFELAG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 39595 MW; 1E2660C9BFB09C20 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKSDNNKI YFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSSAL MDTAHTHLKR ARLFEDLEDE DAAEVVYPSS SVYPSSQQHP EVTVAAIKGY ASPAIQSFFA GPPVKAEEAT PTPKVTKKRG RKKKNAVPEE VNSSAPRDDD PESRSKFYES ASARKRTVTA EERERAINAA KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA GRAKFSQGWY EFTLENNLGE GDVCVFELLR TRDFVLKVTA YRVNSI // ID A0A078E0W5_BRANA Unreviewed; 557 AA. AC A0A078E0W5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC07g17860D {ECO:0000313|EMBL:CDX94777.1}; GN ORFNames=GSBRNA2T00158237001 {ECO:0000313|EMBL:CDX94777.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX94777.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX94777.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031884; CDX94777.1; -; Genomic_DNA. DR EnsemblPlants; CDX94777; CDX94777; GSBRNA2T00158237001. DR Gramene; CDX94777; CDX94777; GSBRNA2T00158237001. DR OMA; EINDFGQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 446 528 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 110 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 557 AA; 63770 MW; B3FFEFAE3CDF98A6 CRC64; MASDQIMHVQ LESLATDGTN NYLYDQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPRH ENNVQNINYF TKVLSASDTN KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWNFKH TLRGMPQRHL FTSGWNEFAK GKDLVVGDCF VFLRGENGES RVGIRKSAHH QQHNIPSPVI SKQSMHHGVV ATALNAIERK CMFVVFYKPR SSQFLVNFEK FIDGVNRKLS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS THWKDSEWRS LEVQWDEAAT IPRPDKVSPW EIEPLTHSSN IPKSVFLKNK RQSEINDFGQ EIGQKSIQSS MSYSFPSMSK PNYNEQMVKA MKETSTTTEA ASYRLFGVDL TFPAKTKDLV QPTHSYKKSK ISKIFEEEKV DQIQTKTHTK VCMEGAAERT MDLTIFDGYN QLIDELERLF DIKDMLHMHN QWKIVFINAD GDMMLLGDDP WPKFCNTAKE IFIYSENDAK RGNADNKFAE GDPRLTTTIL PPDVNNN // ID A0A078E1G6_BRANA Unreviewed; 626 AA. AC A0A078E1G6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC09g23520D {ECO:0000313|EMBL:CDX94484.1}; GN ORFNames=GSBRNA2T00157683001 {ECO:0000313|EMBL:CDX94484.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX94484.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX94484.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031882; CDX94484.1; -; Genomic_DNA. DR EnsemblPlants; CDX94484; CDX94484; GSBRNA2T00157683001. DR Gramene; CDX94484; CDX94484; GSBRNA2T00157683001. DR OMA; DIYGHEW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 419 509 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 82 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 626 AA; 71792 MW; 85C4D1E5331D5ABA CRC64; MAGDQIMHAQ PEVLAIDETN NYLNGILWKL CAGPLFDTPE VGEKVETNTN EIYAEVSLVS DISDVEIPIP KNENNIQNIN YFTKVSSASD THTNGGFVLY KRHAIDCLPL LDMSQLTTSQ EIIAKDIYGH EWSFKHTLSA TRYTKKHLFT SGWNEFAKRK KLVAVDSFVF LRGENGESRV GISKAAHHQR NIPTSLISKQ SMHHSVVATA LNAIKNKCMF VVLYKPRSSQ FLVNFEKFVD RVNNKFSIGS KFSMKFEGKD LNEIRYNGTI VGVRDFSTHW KDSEWRSIKV QWDEGATIPR LDKVSPWEIE LLTHSSKIFK SDDLKHKRQI EVHEFGQEFR QSSIQSSMRF SFPTIYSEQM IQAMKETSTT TATTSCRPFG VDLMVPAITK DPVEPIDSYK KFKISKIFEN ERVDHVEAKS RTKVHMEGVI ERTVDLTIFD GYNQLIDELE RLFDIKGELH MHNQWKMFFI YDDGDMMILG DHPWPKFCNM AKEIFICSKE DVKIEIANNR FFEVIFRFSF LFSMAFKASI PSMDRLKGWG LNVPSDCLIC ASHQKNRQHI FLVAHIPLRF DISSRPNSIS AVIQASKVHQ HIQIVLQGAR NRLSRSAVFV MNTTELINCS LAVCTP // ID A0A078E1S4_BRANA Unreviewed; 545 AA. AC A0A078E1S4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC03g25860D {ECO:0000313|EMBL:CDX95705.1}; GN ORFNames=GSBRNA2T00101601001 {ECO:0000313|EMBL:CDX95705.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX95705.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX95705.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031890; CDX95705.1; -; Genomic_DNA. DR EnsemblPlants; CDX95705; CDX95705; GSBRNA2T00101601001. DR Gramene; CDX95705; CDX95705; GSBRNA2T00101601001. DR OMA; HEANPSL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 434 526 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 61352 MW; DC9A0440E491A05A CRC64; MANVEDDHLY MELWKACAGP LVEVPRYGER VFYFPQGHME QLVASTKQEG VVDQEIPDFN LPSKLLCRVL SVLLKAEHET DEVYAQITLQ PEEDQNEPES LDPPVTEAAK QSVDSFVKIL TASDTSTHGG FSVLRKHATE CLPLLDMTQP TPTQELVARD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLIAGDAF VFLRGKTGDL RVGVRRLARQ QSTMPASVIS SQSMNLGVLA TASHAVNTKT MFVVFYKPRI SQFIIGVNKY MSAMKSGFST GRRFRMRFEG EESPERVFTG AIIGSGDISP QWQASKWRLL QIQWDEPSLL YKYLLPEITG SPVASNFLSS FPQSHEANPS LKLLFQDPPS GLQCKKTETS VTSCCRLFGF DLMSKPTTTP SPLGKQVISM DSNNSASTKC QDLNSHQKQQ TSTRSRIKVQ MQGTAVGRAV DLTLLRSYDE LISELEKLFE IEGELRPKDK WAIVFTDNEG YMMLAGDDPW NEFCKMAKKL FIYSSDEVKK MSSKSSLDDE GTIINLEPDQ RIANL // ID A0A078E2A3_BRANA Unreviewed; 343 AA. AC A0A078E2A3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC01g33680D protein {ECO:0000313|EMBL:CDX95476.1}; GN Name=BnaC01g33680D {ECO:0000313|EMBL:CDX95476.1}; GN ORFNames=GSBRNA2T00101258001 {ECO:0000313|EMBL:CDX95476.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX95476.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX95476.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031889; CDX95476.1; -; Genomic_DNA. DR EnsemblPlants; CDX95476; CDX95476; GSBRNA2T00101258001. DR Gramene; CDX95476; CDX95476; GSBRNA2T00101258001. DR OMA; DGRSKFS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39639 MW; F42CB650B26CB3CD CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSTGL MDSAHNHFKR ARLFEDLEDE DVEVVHPSPL YPSQHPETTA HANKGHTSSA IQSFFAEPPV KAEETTPTPK VPKKRGRKKK NADPEEINSS APRDDDPENR SKFYESASAR KRTVTAEERE RAINAAKTFE PTNPFFRVVL RPSYLYRGCI MYLPSGFAEK YLSGISGFIK VQLGEKQWPV RCLYKAGRAK FSQGWYEFTL ENNLGEGDVC VFELLRTRDF VLNVTAFRVN EYV // ID A0A078E386_BRANA Unreviewed; 264 AA. AC A0A078E386; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=BnaC01g34590D protein {ECO:0000313|EMBL:CDX95567.1}; GN Name=BnaC01g34590D {ECO:0000313|EMBL:CDX95567.1}; GN ORFNames=GSBRNA2T00101423001 {ECO:0000313|EMBL:CDX95567.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX95567.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX95567.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031889; CDX95567.1; -; Genomic_DNA. DR EnsemblPlants; CDX95567; CDX95567; GSBRNA2T00101423001. DR Gramene; CDX95567; CDX95567; GSBRNA2T00101423001. DR OMA; NTHMYFL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 264 AA; 30449 MW; BEF91A24CA53D7C0 CRC64; MLPESENREN LSNPSFIKSL SIGQNWKSKS MRIFPEEFVR SAGEAFVHRV VLSVLWNNSW QCWLQQEKNG LFMVEEDWDE FVDDNLLDTD DTLLFTHQDT MYFQVRIFKK DGNEITSVPL EGEPETQPFH QETTPAYASA NGGTSSRARK GYAHVENPKR YLLNPRNPYF EKTLTKTNIV LYVNTWVIEE YDLEFSPPNT HMYFLLPDGE KLDGYTKDYG GSHSFLGWAA VCERCNLRTG DTVVCELELS GRVVSAVRVH LLDE // ID A0A078E3E4_BRANA Unreviewed; 295 AA. AC A0A078E3E4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC05g36420D protein {ECO:0000313|EMBL:CDX95891.1}; GN Name=BnaC05g36420D {ECO:0000313|EMBL:CDX95891.1}; GN ORFNames=GSBRNA2T00101881001 {ECO:0000313|EMBL:CDX95891.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX95891.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX95891.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031891; CDX95891.1; -; Genomic_DNA. DR EnsemblPlants; CDX95891; CDX95891; GSBRNA2T00101881001. DR Gramene; CDX95891; CDX95891; GSBRNA2T00101881001. DR OMA; HHSEMRC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 34454 MW; 5B462DCEEF46D0A7 CRC64; MSWNGRIKEE RKNLSFFKIF QSADLSSECM RALPYNFMQN LSKEDFSYKM VIRAERGSSW EVDISKNPRF YYMEKSGWNQ FVSDNALGDN EFITFTQKGS MSFNVNIYGK NGKEIVAPRK PPTTTPLSGV KKEEGERSYK DVKKEEETCE SMEGVELEEA TKKKKKSKKV LSYKAEKLKT LKKKKKIKTV KKGVPEFEIT IRKSYLKFML LPRVFEEEHI PGESMEYTIH HSEMRCSWNV LCLVRENRTV FSSGWSRLAR EFPLKVGDRC TFKLIKPTEF VLITKKSRKE TTVIG // ID A0A078E552_BRANA Unreviewed; 669 AA. AC A0A078E552; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC09g23080D {ECO:0000313|EMBL:CDX94528.1}; GN ORFNames=GSBRNA2T00157770001 {ECO:0000313|EMBL:CDX94528.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX94528.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX94528.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031882; CDX94528.1; -; Genomic_DNA. DR EnsemblPlants; CDX94528; CDX94528; GSBRNA2T00157770001. DR Gramene; CDX94528; CDX94528; GSBRNA2T00157770001. DR OMA; IMHAQHE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 532 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 669 AA; 75502 MW; BDAC40D732DF93BA CRC64; MAGDQIMHAQ HEVLAIDETN NYLNGKLWKL CAGPLFDTPE IGEKLVASMN DELCQLKAIF DIPSKICCNV FSINLKVETN TNETYAEVSL LHDISDVEIP TPKNENNIQN INYFTKVLSA SDTSTNGGYV SATPSQEIIA KDIHGHEWSF KHTLRGTPKI HLFTSDWNEF AKGKKLVAGD SFVFLREKYL GENGVSRVGI SKAAHQQHNI PTSLISKQSM HHSVVATALN DIRNKCMFVV FYKTRSSQFF VNFDKFVDRV KNKFSIGSKF SMKFEGKDLN EISSGSERFL HSLEGFRMAK SRTATIPRPD KVSPWEIELL THSSNISKSD DLKHKSQIEV HEFGSKMWAP TLSQGQEFRQ SSIQSSMRLS FPTIYNEQMV QAMKETPTTT ATTCCRLFGV DLMVPAITKD PVEPIDSYKF FKISKIFEDE RVDHVQAKSR TKVQMEGVIE RTVDLTIFDG YNQLIDELER LFDIKGELHM HNQWKMFFIY DDGDMMILGD DPWPNLESSS GSASCCSMAS VSVVQRLNPK HGLRGWGLIV PSDCLLCASH QEKRQHIFLV AHSPLRFDIF SRPNSISAVI QAARVPDQLQ PKAFLILAQT FATREQLKHA TSSSFTTASD SSRPTIKAFP IKQQGRPRPD RSDSIHSSSR PVRAQLAAQL LWWSDSTIT // ID A0A078E5B7_BRANA Unreviewed; 349 AA. AC A0A078E5B7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC07g10500D protein {ECO:0000313|EMBL:CDX94608.1}; GN Name=BnaC07g10500D {ECO:0000313|EMBL:CDX94608.1}; GN ORFNames=GSBRNA2T00157904001 {ECO:0000313|EMBL:CDX94608.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX94608.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX94608.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031883; CDX94608.1; -; Genomic_DNA. DR EnsemblPlants; CDX94608; CDX94608; GSBRNA2T00157904001. DR Gramene; CDX94608; CDX94608; GSBRNA2T00157904001. DR OMA; PNDIMDL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 165 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 39998 MW; 90286DBCC647400E CRC64; MDNFLPFSSS NANSVQELSM DLNKNRSHFS MAQPQHLLPP YSYVACPVLD QTGAMNHQPL HSSDAFPQIP VVQTGGEFGY LVCKPGVRQE RGGFLDPHST KMARINRKKA MIRSRNNSNL NSSSNELVDS RRQVALTMKN NAEIAARKDF YRFSSFDNKK LRVLLVKHLK NSDVGSLGRI VLPKREAEGN LPELSDKEGM VLQMRDVDSV QSWSFKYKYW SNNKSRMYVL ENTGEFVKKN GVLMGDYLTI YEDESKNLYF SIRKHPHKQN DGREDESMEV IEMNFYEDIM FDYIPNGEDD SIAMLLGNLN EHYPYPNDIM DLTVDLDQHQ QATSSSPPAD HMSSNDFLW // ID A0A078E5P1_BRANA Unreviewed; 370 AA. AC A0A078E5P1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC07g17570D {ECO:0000313|EMBL:CDX94748.1}; GN ORFNames=GSBRNA2T00158176001 {ECO:0000313|EMBL:CDX94748.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX94748.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX94748.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031884; CDX94748.1; -; Genomic_DNA. DR EnsemblPlants; CDX94748; CDX94748; GSBRNA2T00158176001. DR Gramene; CDX94748; CDX94748; GSBRNA2T00158176001. DR OMA; NITCNAC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 370 AA; 43009 MW; AC2FE39AD12F3F87 CRC64; MDLSNITCNA CFVRIFGFEF VFQLIKNIIC NYILSTDESN NYMYCQLCKL CAGPLFDPPK VGEEIYYFPQ GHIEHAIFYF QTYYILSLIY MDDELCQLKP NFDIPSKIRC NVFSIKLKLY LLTVNETTTD EIYAEISLLP DISEVEIPTP KPENNIQNIN YFTKVLSASD TSKKGSFVLN KRHAIECLPL LDTSKLTPSQ EVIAKDMHGH EWKFKHTLRG TPQRHLFTSG WNDFSKRKDL DVGDSFVFLR GENGESRVGI RKAAIHQQHN KPSSLISKQS MHHGIVATPL NAVKRKCMFV VFYKPRSSQF LVNFDKFIDG VNKKFSIGSR FLMKFEGRDF NEIRYYGTIV RVRDFSTHWK DSEWRSLEVQ // ID A0A078E5P8_BRANA Unreviewed; 319 AA. AC A0A078E5P8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA08g21040D {ECO:0000313|EMBL:CDX96561.1}; GN ORFNames=GSBRNA2T00102753001 {ECO:0000313|EMBL:CDX96561.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX96561.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX96561.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031895; CDX96561.1; -; Genomic_DNA. DR EnsemblPlants; CDX96561; CDX96561; GSBRNA2T00102753001. DR Gramene; CDX96561; CDX96561; GSBRNA2T00102753001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 319 AA; 36242 MW; 8D1D2A9052922368 CRC64; MSRKPSDFEM VTGSPALGSA YYIPQGHAQY CNTSEDTVSV CRYMPPYLCN VAYKNCFGDN TTDELFTTVC LSPCTTHQNN FTDHSPHGFF RLSKLLEPPH LTEMCFPAAL VPPRSDILRL SDVERKEWQM KLVFDVETGE YTVGEEWASF VRAKDLRAGD TVVFVSVLGS AITLFATSRA HSQSKVRHSI NLDAFSKAIG GLMQSKPVEL TYSPMDPHSD FLVSPRVYRD SLLVVWMRGM RVKKVREYDD DHHVGTITST TFGNSDVHGV MRSLWRCHTV VWDAPYGFDR IHFSPWELTP SQEQPQRQPQ PPRTLHLFP // ID A0A078E6L0_BRANA Unreviewed; 1020 AA. AC A0A078E6L0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA08g22150D {ECO:0000313|EMBL:CDX96672.1}; GN ORFNames=GSBRNA2T00102884001 {ECO:0000313|EMBL:CDX96672.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX96672.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX96672.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031895; CDX96672.1; -; Genomic_DNA. DR EnsemblPlants; CDX96672; CDX96672; GSBRNA2T00102884001. DR Gramene; CDX96672; CDX96672; GSBRNA2T00102884001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 892 985 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1020 AA; 112465 MW; A66E88909EF8EE09 CRC64; MKAPSNGFHP SSAEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLIAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANNS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS VWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNTLSA GAAATTQLPS AYNLPKNFAL NDPSKLLNFQ SPNLSPVNSQ FNKPNMVSSH ISQQMQVQPA MVKSQQQVQI SHQQLQQGVY NAGSVNNGVS VVSCQNQSTG FSQSQLQQQS MLSNGSAKMN HQSIVGNKSS SQMTSQELQF QQQMELHNSS QLLRTQQEQS SMHSLQQTPQ QLQMQQQSST PSPSQQLQLQ LLQKLQQQQQ STPPVSSSLQ PQLSAALQQT QSHQLQQLLS SQNQQPFSAP TFMQPPQVQV SHHQQQGHMN NKPLVAAGGS HSGHTDGEVP TCSTSPSANN TRHDNVSPTN FLSRSQQQGQ AASVPAPDPV QSRNNQGMVN LRSAADQINV STAGTTYCPD AVGTAQQQQT LPLPSFGYCQ QRNNLACAGN IEAVTTPDAL YSQKEFQNLV PNYANAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNHSGIMNG GGLWPNQAQR MRTYTKVQKR GSVGRSIDVT RYSGYEELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATTQVCSETD SGNAWKVHYE DTSAAASFNR // ID A0A078E7R1_BRANA Unreviewed; 339 AA. AC A0A078E7R1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA02g20420D protein {ECO:0000313|EMBL:CDX97251.1}; GN Name=BnaA02g20420D {ECO:0000313|EMBL:CDX97251.1}; GN ORFNames=GSBRNA2T00104268001 {ECO:0000313|EMBL:CDX97251.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX97251.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX97251.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031898; CDX97251.1; -; Genomic_DNA. DR EnsemblPlants; CDX97251; CDX97251; GSBRNA2T00104268001. DR Gramene; CDX97251; CDX97251; GSBRNA2T00104268001. DR OMA; WNLGRSE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38554 MW; CC84D78D227E077E CRC64; MSTRASTHQE PAENGASGSD NNNNNNFNSA MREPMFQKVL TPSDVGKLNR LVIPKQHAEN YFPLEDNQTG TLLDFQDKNG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LNNGDTVSFH RGYVPDDNEP EQRRNILFID WRNRPDTNLL HNINHHHYPI LGPPPYPTAS YYPVTEYSMP HYGRFPSLYH NQFLGYGYGP YGKTVTGGRY YAGSPLDHHH RWNLGRSEPF FYDSCPVFPT TRLTSSLAML PSSPPSQPPQ EGTAKKLRLF GFDVEESSSS GEARAEMGVA GHSSSSPVVI RDNESSWRSP RGEMGGLSSS VVNLSDDEDY KRKGKSLEF // ID A0A078E7V3_BRANA Unreviewed; 445 AA. AC A0A078E7V3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA02g20770D protein {ECO:0000313|EMBL:CDX97286.1}; GN Name=BnaA02g20770D {ECO:0000313|EMBL:CDX97286.1}; GN ORFNames=GSBRNA2T00104328001 {ECO:0000313|EMBL:CDX97286.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX97286.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX97286.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031898; CDX97286.1; -; Genomic_DNA. DR EnsemblPlants; CDX97286; CDX97286; GSBRNA2T00104328001. DR Gramene; CDX97286; CDX97286; GSBRNA2T00104328001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 445 AA; 50436 MW; E55DA50D0654ABEF CRC64; MASTDSLPRF FKVFISHFSS DSMLIPISYY DELPRHLPKT VILQGTGGCL WKVAMRLKQE EEEVYLEQGW PKFVKDNALV DGDFMTFVYN GDNIFEVSIY GLDGCKQARA MAEEEEEEGE GEDSICALSS DDTEDTNAES ESANTVQRSN DKGKAKVEAD DEEEEEEEDS VYSLSNSKDT DTGTSSEFEM ANTILRSKTK GKSKEEVIKE ESDGKEDSDH SLNSEVKETD TGSEYKIPKN KGKKKKEVVE SSDSDYAEEF GRLDLDLEED STSSDSSYAP DSDEDTATHV KRKAVTKGSQ GKSKVIKDVS EVGDTSCAVE RVPKTREKVK AIIENPEVYL DDPTNIHFET GVKNRKYELL VHAQLVKDYC LRFKDYIYYL DPKGKLEAKT AKWKDQRVCI KKWVKICDRN KLKKQDRVVC ELLRNKDLVY AVKIHIIRGK HLVSV // ID A0A078E9W7_BRANA Unreviewed; 325 AA. AC A0A078E9W7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA06g07470D protein {ECO:0000313|EMBL:CDX97996.1}; GN Name=BnaA06g07470D {ECO:0000313|EMBL:CDX97996.1}; GN ORFNames=GSBRNA2T00105354001 {ECO:0000313|EMBL:CDX97996.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX97996.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX97996.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031902; CDX97996.1; -; Genomic_DNA. DR EnsemblPlants; CDX97996; CDX97996; GSBRNA2T00105354001. DR Gramene; CDX97996; CDX97996; GSBRNA2T00105354001. DR OMA; QAAFKKQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 169 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 169 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 36423 MW; 7E1D8A3391167416 CRC64; MEVSSVDEST TSTGSICETP AMTSAKSSVN LHRMGSGSSV VLDSENGVEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VYRFRGRDAV TNFKEARLDD GEVEFLSSHS KAEIVDMLRK HTYSEELEQS KRRRNGNGNT ARTSAEALFE KAVTPSDVGK LNRLVIPKHH AEKHFPLPSS NVSVKGVLLN FEDVTGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLLAG DVVSFSRSEG QDQQLYIGWK SRSGPDVETG RVLRLFGVNI SPESSRTEVV GSKRVNDTEM LSLVCSKKQR IFHAS // ID A0A078ECE5_BRANA Unreviewed; 340 AA. AC A0A078ECE5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC02g35650D protein {ECO:0000313|EMBL:CDX99755.1}; GN Name=BnaC02g35650D {ECO:0000313|EMBL:CDX99755.1}; GN ORFNames=GSBRNA2T00108406001 {ECO:0000313|EMBL:CDX99755.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX99755.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX99755.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031913; CDX99755.1; -; Genomic_DNA. DR EnsemblPlants; CDX99755; CDX99755; GSBRNA2T00108406001. DR Gramene; CDX99755; CDX99755; GSBRNA2T00108406001. DR OMA; KHTYLDE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 186 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 186 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38250 MW; 312A8360C1C4DBAA CRC64; MEAVSSVDES STSTVSIHTP AKITPPPKTA KSSSPASLYR MGSGSSVVLD SQNGVEAESR KLPSSKFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA ARVYDVAAHR FRGSDAVTNF KPDTTFRNGE GDGDEVKFLN AHSKYEIVDM LRKHTYKEEL EQRKRKQTAF ANVTVVTGFK TAECLFEKTV TPSDVGKLNR LVIPKHQAEK HFPLPLTGDV SVRGTLLNFE DVNGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKRLCAGDL ISFKRSNGQD QQLYIVWKSK AGLEQDTGRV VVRLFGVDIA SVKSRNDVVM KEETEMSLSS NKKQRLVTTI // ID A0A078ECJ9_BRANA Unreviewed; 239 AA. AC A0A078ECJ9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=BnaC09g49240D protein {ECO:0000313|EMBL:CDX98911.1}; DE SubName: Full=BnaCnng66590D protein {ECO:0000313|EMBL:CDY70080.1}; GN Name=BnaC09g49240D {ECO:0000313|EMBL:CDX98911.1}; GN Synonyms=BnaCnng66590D {ECO:0000313|EMBL:CDY70080.1}; GN ORFNames=GSBRNA2T00096275001 {ECO:0000313|EMBL:CDY70080.1}, GN GSBRNA2T00107017001 {ECO:0000313|EMBL:CDX98911.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX98911.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX98911.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). RN [2] {ECO:0000313|EMBL:CDX98911.1} RP NUCLEOTIDE SEQUENCE. RA Genoscope - CEA; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031907; CDX98911.1; -; Genomic_DNA. DR EMBL; LK041093; CDY70080.1; -; Genomic_DNA. DR EnsemblPlants; CDX98911; CDX98911; GSBRNA2T00107017001. DR EnsemblPlants; CDY70080; CDY70080; GSBRNA2T00096275001. DR Gramene; CDX98911; CDX98911; GSBRNA2T00107017001. DR Gramene; CDY70080; CDY70080; GSBRNA2T00096275001. DR OMA; PPSHSEY; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 104 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 239 AA; 26494 MW; FD32E15804E532EC CRC64; MSVNHYSTDH HHHHNTLFWQ QLHTTDATET TTATWLNQDQ KESLFEKTLT PSDVGKLNRL VIPKQHAEKY FPLNAISNNA DASTEKGMLL SFEDELGKCW RFRRGQGSSS AVANPTSYSS SMVAASPYLQ VHASSNYSNP PSHSEYSHYG AAVATASETH SIPSSSAVGS SRTVRLFGVN LECQRDEDDG DDSVAATTAT ECPDGYYGQN MYYYYTPHPH NMNIAFTGDT MKQLGDRRG // ID A0A078EDR5_BRANA Unreviewed; 346 AA. AC A0A078EDR5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC05g34060D protein {ECO:0000313|EMBL:CDX99291.1}; GN Name=BnaC05g34060D {ECO:0000313|EMBL:CDX99291.1}; GN ORFNames=GSBRNA2T00107563001 {ECO:0000313|EMBL:CDX99291.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX99291.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX99291.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031909; CDX99291.1; -; Genomic_DNA. DR RefSeq; XP_013744124.1; XM_013888670.1. DR EnsemblPlants; CDX99291; CDX99291; GSBRNA2T00107563001. DR GeneID; 106446859; -. DR Gramene; CDX99291; CDX99291; GSBRNA2T00107563001. DR KEGG; bna:106446859; -. DR OMA; CILQFDE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 39559 MW; A274C2C6C7160AB0 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADSNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSSAL MDTAHTHLKR ARLFEDLEDE DAAEVVYPSS SVYPSSQQHP EVTVAAIKGY ASPAIQSFFA GPPVKAEEAT PTPKVTKKRG RKKKNAVPEE VNSSAPRDDD PESRSKFYES ASARKRTVTA EERERAINAA KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA GRAKFSQGWY EFTLENNLGE GDVCVFELLR TRDFVLKVTA YRVNAI // ID A0A078EDT3_BRANA Unreviewed; 851 AA. AC A0A078EDT3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA06g21460D {ECO:0000313|EMBL:CDY00245.1}; GN ORFNames=GSBRNA2T00109795001 {ECO:0000313|EMBL:CDY00245.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY00245.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY00245.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031917; CDY00245.1; -; Genomic_DNA. DR EnsemblPlants; CDY00245; CDY00245; GSBRNA2T00109795001. DR Gramene; CDY00245; CDY00245; GSBRNA2T00109795001. DR OMA; STMAAIH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 725 823 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 94596 MW; 81AFC773442471DB CRC64; MASSDVSMKG NRGGGENFSS LGYSGPTGAA GESLKTQSNR SVAAERVVDP DAALYRELWH ACAGPLVTVP RQDDRVFYFP QGHIEQVEAS TNQAAEQQMP LYDLPSKILC RVINVDLKAE ADTDEVYAQI TLLPEPVQDE NAIEKESPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHASEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRTSPSEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDSDPTRWA KSKWRSLKVR WDETTSIPRP DRVSPWKIEP ALSPPALSPV PMPRPKRPRS NLAPSTPDSS MRIREGSSKA NMDPLPASGL SRVLQGQEYP TLRTKHVESG ECDAPENSVV WQSSADDDKV DVVSASRRYE NWISSGRHGP TCTDLLSGFG TNIEPPHGHQ IPFYDRLSSS SPSVAARKIL SDQDGKFEYL ANQWQMMHSG LSLKLHESPK VPAASDASFQ GIGNPNYGEY ALPRAVTTEN AAGNWPIRPR ALNYFEEAVH AQTREHVTKR PAVVEDEAAK PRDGNCRLFG IPLVNNVNGT DTTLSQRNNL NDCTGPTQIA SPKVQDLSDQ SKGSKSTNDH REQGRPFPVN KPHPKDVQTK TNSCRSCTKV QKQGIALGRS VDLSKFQNYE ELVTELDRLF EFNGELMAPK KDWLIVYTDD ENDMMLVGDD PWQEFCCMVR KIFIYTKEEV RKMNPGTLSC RNEEEPVVGE GSDAKDAKSA SNPSLSSAGN S // ID A0A078EEL9_BRANA Unreviewed; 763 AA. AC A0A078EEL9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC04g41110D protein {ECO:0000313|EMBL:CDX97828.1}; GN Name=BnaC04g41110D {ECO:0000313|EMBL:CDX97828.1}; GN ORFNames=GSBRNA2T00105140001 {ECO:0000313|EMBL:CDX97828.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX97828.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX97828.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031901; CDX97828.1; -; Genomic_DNA. DR EnsemblPlants; CDX97828; CDX97828; GSBRNA2T00105140001. DR Gramene; CDX97828; CDX97828; GSBRNA2T00105140001. DR OMA; MHSEDAL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 277 378 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 521 571 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 277 378 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 671 695 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 763 AA; 83712 MW; 4902A41714909C68 CRC64; MCMNASCGST STVEWKKGWP LRSGALADLC FRCGSAYETS LFCETFHLDQ SGWRECYLCN KRLHCGCIAS KLVVEFMDYG GVGCSTCTNC HQPNLGKIGE NPGLFSRLPM NRQHTNGENG MNVGKADLFS QPLVQGDDKR EEFMPHRGFS NLIKTDRLDG GEILESSSTP SQPPSLNMPL AALPYSLNFA TATKKLMDAS SQPHAVQSSS SSILQTPSKS VLGTPPGTSK SAQARIGRPP NEGRGRSHLL PRYWPKYTDK ELQQISGNLN LNIVPLFEKT LSASDAGRIG RLVLPKACAE AYFPPISQSE GIPLKIQDVR GKEWIFQFRF WPNNNSRMYV LEGVTPCIQS MMLQAGDTVT FSRVDPGGKL IMGFRKATHT KDIQGCGLTN GTLNEDTSSS GVTETPTSIN ASSCPSQNPE ELKGLPEHLN SNHGGSSLKK SEVNGVKDKK RTRTVGAKSK RLLLHSEESM EVRITWEETQ ELIRPSPSEK PTVVVIEEHE FEEFYEPPVF GKRTIITSKP SGEQERWASC DDCSKWRKLP VEALLPAKWT CSDNVWDESR CSCSAPEESL KELENVLRMS KEYKKRRTGV SQTVRTEEEL TGLDALASAA ALGDTLGEEE EPATTTRHPR HRVGCSCIVC IQPPSGKGRH NSSCLCTVCS TVKRRFKTLM MRRKKKQLER EEIEAAAAAD QENKEDGKTG RIDLNSDPCN RGEVEAVGVE EKDESGKGEA GECLGVAQAG DVVGVTELEG EGEKIGEESK GSS // ID A0A078EEN0_BRANA Unreviewed; 207 AA. AC A0A078EEN0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC05g34090D protein {ECO:0000313|EMBL:CDX99294.1}; GN Name=BnaC05g34090D {ECO:0000313|EMBL:CDX99294.1}; GN ORFNames=GSBRNA2T00107566001 {ECO:0000313|EMBL:CDX99294.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX99294.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX99294.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031909; CDX99294.1; -; Genomic_DNA. DR RefSeq; XP_013744123.1; XM_013888669.1. DR EnsemblPlants; CDX99294; CDX99294; GSBRNA2T00107566001. DR GeneID; 106446858; -. DR Gramene; CDX99294; CDX99294; GSBRNA2T00107566001. DR KEGG; bna:106446858; -. DR OMA; NVSACET; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 207 AA; 23611 MW; 5088E3DC2A75F408 CRC64; MVTTRQTKAR VTTASHRRPQ PEPDSSVKKF FKVVLPSTVK RNMLMIPPRF VILQGSTLSE FVTLETPVGF RRSIKLKRIG EEIWLQGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFN VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL NDVDEINSIK LLEEEEGKRV FRGQQFF // ID A0A078EEV1_BRANA Unreviewed; 1602 AA. AC A0A078EEV1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE SubName: Full=BnaC01g11830D protein {ECO:0000313|EMBL:CDX99369.1}; GN Name=BnaC01g11830D {ECO:0000313|EMBL:CDX99369.1}; GN ORFNames=GSBRNA2T00107676001 {ECO:0000313|EMBL:CDX99369.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDX99369.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDX99369.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031910; CDX99369.1; -; Genomic_DNA. DR EnsemblPlants; CDX99369; CDX99369; GSBRNA2T00107676001. DR Gramene; CDX99369; CDX99369; GSBRNA2T00107676001. DR OMA; QEHINAP; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.10140; -; 1. DR Gene3D; 3.80.10.10; -; 3. DR Gene3D; 4.10.1000.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR011713; Leu-rich_rpt_3. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000157; TIR_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR000571; Znf_CCCH. DR Pfam; PF02362; B3; 1. DR Pfam; PF07725; LRR_3; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF01582; TIR; 1. DR Pfam; PF00642; zf-CCCH; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00255; TIR; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52200; SSF52200; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50104; TIR; 1. DR PROSITE; PS50103; ZF_C3H1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Leucine-rich repeat {ECO:0000256|SAAS:SAAS00492074}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Repeat {ECO:0000256|SAAS:SAAS00492321}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}. FT DOMAIN 217 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 459 TIR. {ECO:0000259|PROSITE:PS50104}. FT DOMAIN 1511 1539 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DNA_BIND 217 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 1511 1539 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. SQ SEQUENCE 1602 AA; 180252 MW; B76CF8E155AA758F CRC64; MDRLRALRRQ GLRDFEPSLP PRFMDRILDR MKKSLNRSGI SRRRLERCSS SFAEDLSVST SSFATLPDRT SFRLLAAGGD GELDRIYKSL GVSGPDDLAI SFDAWEASKM RSSSGIVNRF QPQADVLSSG VDSLDRDNTG GVGRFFKEHA SEKASEKEHG EMNLNPNYHD DVREDLFEIC LTTIDVSNVD RLAVKANKDA GEYFLLATVV AGTDSLLRFE DEEGKTWLFG FSYLNVSQCC EFTQGWSSYV EEKQLKAGDF VSFQRDRKDS SKLFIGCRKS DESFPNPTSP GASIKTVEMR ERLKGVETPF QPKLSEHSVT GSDPVLVIYC GDNQVSEEIY LISYIFNELC RRGFSPLRYD MKKGTVTENQ KLLHISRVGI IIFSMNFAHF RECLDGFVAV MDHLKANELV LVPVFFKVRV SDVRGQSGSF GRAFIRLRNS VKASEVLKWR AAMIELTSIS GYAYKKGDEV ILAKNIVRDV CLPLSSETNM KLRGTRLSLE SILSLLNRSQ PSSPQIVGLW GMAGIGKTTI TREFFRTQAE RYDVCYFLPD FHLMCQTKGL SYLRDDFFSK IFGAEKVFVD ACDTKLRFTR DRFLGKKVLI VLDGVSSAKD AEILVGGFGW FSGGHTIILT SRNRQVLVQC NAKVIYEIEK LSKLESLHLC CKFASKENCK GRMSLTSELV DYASGNPLAL RVLGLSIQNQ SMKDQKQHLR RLRQHPPVKI LDAFKISFNG RDGDEKSIFL DLACFFRGED RDRVVKILDD CGFSTDLGIY GLIDESLISL LGNKIEMPNI FQDAGRFVVC QEHEEPGNRS RLWDSSDIAG VLKNNTGTEA VEGIFLDASG LTFDLSSTAF ARMYRLRLLK IHCPTSVNHC KVCLPEGLHS LPDELRLLHW EKYPLGSLPR NFNPKNLVEL NMPYSNLTKV WKGTKNLEKL KRIILSHSQH LTKFPRLSKA RNLEHIDLEG CTSLVKVNSS ILHHHKLTFL SLRNCSRLRV MPTTVHLKSL EVLNLSGCSE LENLQDFSLN LKELYLAGAA IRELPSSIGD LTRLVTLDLE NCESLQHLPP GISNLKAMMT LKLSGCSNLK SLPVLDALFL QDSQRSNTRI TMEESVSINL HSAIQESSRE ALEEFLPAFE CLSNNGIPQE SWTWVTVIPF PSPILHSLAS RLYALVSLFL CNAYLVDIPE DICWLASVMR LDLGGNSFSQ IPKSIKEFRN LHSLNLRHCK NLKSLPELPR SLVTLNAHGC VSLKSFPTSF EQFPRHFTFS NCFNLSPKVV RKYIGKALDS VKGMAKRILQ ASLEQEHINA PAFSICIPAS AGHQSSFNFQ AGSFVRRQLT PGMLKTLSGF ALSVVVEFWD NYSNNAGFGI KCICRKTRTD LSPRLERIFR CWAPKEPITV QRDHMFVFGS VKMHHAEAVN HDFLSDSVTF EFHPVNSENQ LLGDSCTVKR CGVYLITDAT GNTTLSAKRP SSSMDSGGLS SMEHVAPPYK RCRLKGVIEI VILSLRKRKR EMSVPTVKSF SKVKSLCRSY VRTGNCAVGP SCSFDHPTWV FTEKPKRLSA SKSNQATSGK DAIDTEQEEE YMPNVIPHVV QNVQLLAWIQ WSMWNDHIRD AD // ID A0A078EF53_BRANA Unreviewed; 295 AA. AC A0A078EF53; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC03g37040D protein {ECO:0000313|EMBL:CDY00720.1}; GN Name=BnaC03g37040D {ECO:0000313|EMBL:CDY00720.1}; GN ORFNames=GSBRNA2T00110568001 {ECO:0000313|EMBL:CDY00720.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY00720.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY00720.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031921; CDY00720.1; -; Genomic_DNA. DR EnsemblPlants; CDY00720; CDY00720; GSBRNA2T00110568001. DR Gramene; CDY00720; CDY00720; GSBRNA2T00110568001. DR OMA; YSKHIEG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 224 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 224 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33617 MW; BD4C250766CEF30D CRC64; MANVSASSPI NPHFLQPLLP GFHSHINIPI AFYSKHIEGT TNDSNANATV KLRSDASDVT WEVKMDGRRL TQGWEKFATG HAFKVGDIVI FRHDGDLLFH VTFWPNSDSE KYQQQHTRET GSSSDNSCLV ARVTESNLIN DALIILMNED GKPWTLFLKY YDTSGHVYIR RGWRSFCQAN RKRAKDVLTF KLVKTGTKPV LQFRAYSVYN RRSSSSSSIS QDRFVTLTLR PYNLKNSKLC LPVPFVKANG IKNAREITLV DRYGVKRTTS LKPDDKYGRM RLGKECIKFC EVKSL // ID A0A078EFX9_BRANA Unreviewed; 213 AA. AC A0A078EFX9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC05g42100D protein {ECO:0000313|EMBL:CDY00990.1}; GN Name=BnaC05g42100D {ECO:0000313|EMBL:CDY00990.1}; GN ORFNames=GSBRNA2T00111009001 {ECO:0000313|EMBL:CDY00990.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY00990.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY00990.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031923; CDY00990.1; -; Genomic_DNA. DR EnsemblPlants; CDY00990; CDY00990; GSBRNA2T00111009001. DR Gramene; CDY00990; CDY00990; GSBRNA2T00111009001. DR OMA; TNEGNAN; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 213 AA; 24221 MW; EDBCD02B9883BEA4 CRC64; MQVRSSSLRL NVKLHCFNVT SLNGEQETSP KLKQKVFLNG KCFSFLTYQS TFFQPLLPGF QSHLNISMTF YSKHIKGTTN EGNANAVVKL RSDASDLTWE VKMDGRRLTQ GWQEFTTSHD LRVGDIVIFR HDGDLLFHVT TFGPSCCEIQ YDDDVFQISS DSDSDSEMNQ ETREAVSPSD KSCFVARVTP ANLRKNTLVN FSLLHLMYFS IKP // ID A0A078EHR6_BRANA Unreviewed; 1173 AA. AC A0A078EHR6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE SubName: Full=BnaC07g35900D protein {ECO:0000313|EMBL:CDY01600.1}; GN Name=BnaC07g35900D {ECO:0000313|EMBL:CDY01600.1}; GN ORFNames=GSBRNA2T00112650001 {ECO:0000313|EMBL:CDY01600.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY01600.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY01600.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031927; CDY01600.1; -; Genomic_DNA. DR EnsemblPlants; CDY01600; CDY01600; GSBRNA2T00112650001. DR Gramene; CDY01600; CDY01600; GSBRNA2T00112650001. DR OMA; TIAREIF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.10140; -; 1. DR Gene3D; 3.80.10.10; -; 2. DR Gene3D; 4.10.1000.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR011713; Leu-rich_rpt_3. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000157; TIR_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR000571; Znf_CCCH. DR Pfam; PF02362; B3; 1. DR Pfam; PF07725; LRR_3; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF01582; TIR; 1. DR Pfam; PF00642; zf-CCCH; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00255; TIR; 1. DR SMART; SM00356; ZnF_C3H1; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52200; SSF52200; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF90229; SSF90229; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50103; ZF_C3H1; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Leucine-rich repeat {ECO:0000256|SAAS:SAAS00492074}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Repeat {ECO:0000256|SAAS:SAAS00492321}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}. FT DOMAIN 46 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 974 1002 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DOMAIN 1018 1046 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DNA_BIND 46 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 974 1002 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. FT ZN_FING 1018 1046 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. SQ SEQUENCE 1173 AA; 131589 MW; 83BBB3D94F0B6AA8 CRC64; MEILFEKYLT TADLSWLNIF LFGANEEVVE YFGLATVFAR GAEMILRVQD EEGKPWEFGF LDVNIQFYQL TNGWSNYVKE KQLGVGDIVF LQRIFTDSSR LFIGFSRREA ALDGTSSDKL KEVNSPLPLR SHVHSVTEFD PVLVFSCAAN QESGERYFIS YISTELCLRG FTPLIYDLTR GTLTGCLELP HRSRVGIIIF SNNYASSRQC QDNFVAIMDH SKANSLVLLP VFFKVKVTDI RGQSGSFGRA FSQLENSIQA SQVPTFTFID KHQYMKGGEV ILAKNIVSNV CLLLSSENNM KLRGRLQMNS VLSLLYCSQS SAPHIVGLWG MAGIGKTTIA REIFRTQADR YDVCYFLPDF HIACQMRGLS HLRDEFFSKI YGEEKVTVDA CDTKLSFLRD RFLSKKVLVV LDGVSSARDA EFLVGGFGWF SGGHTLILTS RNRQVLIQCT AKEIYEIQKL SEHESLHVCS QFAAVQNWKE RTSLVSELVN YASGIPLALR ALGSSLQNNC IVGEKQHLKT LRQHPLVEIQ DAFKRSFDVL DGNEKHIFLD LACFFRGENK DYVVSILDAC GFFTDLGIYG LIDESLISLV GNRIEMPNIF QDTGRFVVCQ ENNETGKRSR LLDPTDIVDV LTNNSGTEAI EGIFLDASGL TFELSTTAFE KMYRLRLLKL YCPTSENHCK VSLPQGLYSL PDELRLLHWE RYPLGSLPRN FNPKNIVELN MPYSNMTRLW KGTKNLERLK RIILSHSRQL TKFPRLSKAK NLELIDLEGC TSLVKVNSSI LHHQKLTFLS LKDCSRLRSM PATVHLEALK VLNLSGCSEL EDLQDFSPNL SELYLAGTAI TEIPSSIGGL TRLVTLDLEN CNRLQHLPPE ISNLKAVVSL SAKRPASSKE SRDLASFVDV APPYRRYRLK RCIEAVILSL RKRKREKIFS IATNLSEQIH VNGILTITLN EISFILQVMR ASVSTWGFFG LPERPGEPEC AYYMKTGGCK FGSDCKFHHP RHRETHIPGL SSFSHPLRPG NPVCASYYYT GNCSSGATCM FDHPSSIPTH RDTSFVASLT PNLNPRGFSS SIGDSSSELV EAATKKRRIH HNTSPMVSET PLLNLRGFVS SIGDASSKLV EAPTSKVRIA ARKKQRIHKN TTSMASETPH LNPPELSSSP GALSSEHVKQ NKD // ID A0A078EIL8_BRANA Unreviewed; 340 AA. AC A0A078EIL8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC05g42080D protein {ECO:0000313|EMBL:CDY00992.1}; GN Name=BnaC05g42080D {ECO:0000313|EMBL:CDY00992.1}; GN ORFNames=GSBRNA2T00111011001 {ECO:0000313|EMBL:CDY00992.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY00992.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY00992.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031923; CDY00992.1; -; Genomic_DNA. DR EnsemblPlants; CDY00992; CDY00992; GSBRNA2T00111011001. DR Gramene; CDY00992; CDY00992; GSBRNA2T00111011001. DR OMA; KEDTATH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 120 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 120 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38834 MW; 47A4FF6749B4FEBC CRC64; MTNASASSPI NPHFFKPLLP KHSHDFLLKL TSDASDKTWE VKMDGRRLTR GWQNFANGHG VRVGDIVIFR RDGDLLFHVT SFGPSCCQIL YDDDVIQVSS DSEKYHQDTR EEGSPSDNAC FVARVTASNL SRDMLFFPRD FSRSNGLMDR ECEIILLNEY GKPWKLFLRN HKTHGGGVYI RTGWRRFCRQ NRKRVNSLLT FKLVQAGTKP VLQLCSSMYN RDSLRGSSSS SSSSRSQERF LTLTLTTYSL RKSKLCLPGK FVWLNGIENA RKITLVDRYG VKRTTSLRPD NKYGAMRMGK GWREFCKANG VKAGESFTLE LIKEEEINTS THLLKFCTEV // ID A0A078EIP2_BRANA Unreviewed; 348 AA. AC A0A078EIP2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=BnaC05g42090D protein {ECO:0000313|EMBL:CDY00991.1}; GN Name=BnaC05g42090D {ECO:0000313|EMBL:CDY00991.1}; GN ORFNames=GSBRNA2T00111010001 {ECO:0000313|EMBL:CDY00991.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY00991.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY00991.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031923; CDY00991.1; -; Genomic_DNA. DR EnsemblPlants; CDY00991; CDY00991; GSBRNA2T00111010001. DR Gramene; CDY00991; CDY00991; GSBRNA2T00111010001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 176 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 176 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 41 68 {ECO:0000256|SAM:Coils}. FT COILED 107 141 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 348 AA; 40173 MW; 3598542D40A93878 CRC64; MKLGAEFWSN NYDLTCFVKK KEEETAKQKT PEKKVEGNQQ EEKIETREKG LEEKATEIET EMEEGQINEG WKNVSGGKAS RSPRMQELKY GQVKIATPSM FEALSNIGEN GEEIEEDKEK VEDWEKEMVD SEESGKEEEK DNMEDMRKYG NKVVKVLEIG GRQQLPRQSK TRLKFLPRGF SRSNGLMNRE GEIFLLNEYG KPWTALLSYY KKTGDVYLRR GWRNFCHENQ KRANDLLTFK LVQEGTKPVL QLCSSMYNRG SSSTSEDRFL TLTLTHYNFK KCKLCLPATF LKANGIKSAR KITLVDRVER EFCEANGVKA GESFKLELIE EEEEDTAATH LLKFCTKV // ID A0A078EIW6_BRANA Unreviewed; 257 AA. AC A0A078EIW6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC05g41640D protein {ECO:0000313|EMBL:CDY01036.1}; GN Name=BnaC05g41640D {ECO:0000313|EMBL:CDY01036.1}; GN ORFNames=GSBRNA2T00111064001 {ECO:0000313|EMBL:CDY01036.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY01036.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY01036.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031923; CDY01036.1; -; Genomic_DNA. DR RefSeq; XP_013750081.1; XM_013894627.1. DR EnsemblPlants; CDY01036; CDY01036; GSBRNA2T00111064001. DR GeneID; 106452488; -. DR Gramene; CDY01036; CDY01036; GSBRNA2T00111064001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 29084 MW; 99E6DB77C80784D8 CRC64; MSVNHYSNTL SSHNHHIDHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGDD VTESTEKGVL LSFEDESGKS WKFRYSYWNS SQSYVLTKGW SRYVKDKHLN AGDVVLFQRH RFDIHRLFIG WRRRGETSSF SAVSAVSQDP RANTTAFWNV LTTPYRQVHA STSSYPNNIH QEYSHYGPVA ETPTVVAGSS RTVRLFGVNL ECHSDVVEPP PCPDAYNGQH IYYYSTPHPM NISYAGEAME QVGDGRG // ID A0A078EJN7_BRANA Unreviewed; 873 AA. AC A0A078EJN7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA09g26170D {ECO:0000313|EMBL:CDY02285.1}; GN ORFNames=GSBRNA2T00113721001 {ECO:0000313|EMBL:CDY02285.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY02285.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY02285.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031933; CDY02285.1; -; Genomic_DNA. DR EnsemblPlants; CDY02285; CDY02285; GSBRNA2T00113721001. DR Gramene; CDY02285; CDY02285; GSBRNA2T00113721001. DR OMA; AVEEHKC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 814 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 873 AA; 96065 MW; 8C147D06FED346B3 CRC64; MRLSTAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHEDD MSMGMGMSSP LMWDRGLQSL NFQGMGVNPW MQPRLDASGL LGMQNDVYQA MAAAALQDMR GIDPAKAAAS LLQFQNPSGF SMQPPSLMQP QMLQQQLSQQ QQQQQQLSQQ QQQQSYLPSA STAAAVSAMS QFGSASQSMT SLCQQQSFLD TNGGNNNPMS PLHTLLSNFS QDESSQLLNL TRTTNSAAMT SSGWPSKRPA VDLSSFGNNS NTQSVIEQLG QSHNTSNVPP NAVSLPPFPG GGRECSIEQE GGSPSDPHSH LLFGVNIDSS SLLMPNGMSN LRSIGIEGGD STTLPFTTSN FNNDFSGGNL AMTTPSSCID EPGFLQSSEN LGSENQQSNN TFVKVYKSGS FGRSLDITKF SSYHELRSEL ARMFGLEGQL EDPVRSGWQL VFVDRENDVL LLGDDPWPEF VSSVWCIKIL SPQEVQQMGK RGLELLNSAP PSSNNNVVEK LPSNNGNCDD FGNRSDPRNL GNGIASVGGS FNY // ID A0A078EL16_BRANA Unreviewed; 327 AA. AC A0A078EL16; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA07g12220D protein {ECO:0000313|EMBL:CDY01449.1}; GN Name=BnaA07g12220D {ECO:0000313|EMBL:CDY01449.1}; GN ORFNames=GSBRNA2T00112454001 {ECO:0000313|EMBL:CDY01449.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY01449.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY01449.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031926; CDY01449.1; -; Genomic_DNA. DR RefSeq; XP_013651702.1; XM_013796248.1. DR EnsemblPlants; CDY01449; CDY01449; GSBRNA2T00112454001. DR GeneID; 106356501; -. DR Gramene; CDY01449; CDY01449; GSBRNA2T00112454001. DR KEGG; bna:106356501; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37693 MW; 6388DE4D40AB4BA4 CRC64; MVETSEKTPS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKKVVLVDEI GRLWDVETKI GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR FRVSVEKEPV LVKPVGISIK PEPWEDCGKR VMQNRKRVSV REEASVFGEI EPVHQRNTRK KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRNIAV GSLRLLEIPT TFLKANGIEL EEGQDIELCD ENGKKWPLKI EKHGRGCIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT CSQILVRIFR GTLLTTATKS GYHVLPM // ID A0A078ELL9_BRANA Unreviewed; 784 AA. AC A0A078ELL9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC04g14350D protein {ECO:0000313|EMBL:CDY02066.1}; GN Name=BnaC04g14350D {ECO:0000313|EMBL:CDY02066.1}; GN ORFNames=GSBRNA2T00113430001 {ECO:0000313|EMBL:CDY02066.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY02066.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY02066.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031931; CDY02066.1; -; Genomic_DNA. DR EnsemblPlants; CDY02066; CDY02066; GSBRNA2T00113430001. DR Gramene; CDY02066; CDY02066; GSBRNA2T00113430001. DR OMA; KMGSKMC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 288 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 535 585 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 288 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 784 AA; 85777 MW; BC916F3340F7BBA5 CRC64; MFEVKMGSKM CMNASCGSTS SVEWKKGWPL RSGALADLCF RCGSAYETSR FCETFHMEQS GWRECYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNSH SKRGENPGVF SRLPMNMQQT NGERSEANLF SQPLVSGDDK REEFTPHRGF GNLMKPDNNV TTTVYTHDSS SSSPSQPSLN MALATLPYSP SFATPVVDGN KLMAAGGASS SQSHLFQCSA SSILQKPSKT VLGTPPPGTS KSAQARIGRP PVEGRGKGHL LPRYWPKYTD KELQQISGNL NLNIVPLFEK TLSASDAGRI GRLVLPKACA EAYFPPISQS EGIPLKVQDV RGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMRLQAGDTV TFSRVDPGGK LIMGARKATY TVDMQGCGFA NGASNEDTSS SGVTENLTSI NASSCPSQIL EGLPEHLGSP HGGNGLKKSE INGGDDPSRG KEKKRTRTLG AKNKRLLLHS EESMELRVTW EEAQELLRPS ANAKPTVVVI EEHEFEEFDE PPVFGKRTIL TSRPSGEQER WGSCDDCSKW RRLPLDALLP AKWTCSDNVW DSSRCSCSAP EESLKELENV LRAGKEYKKR RIGVSQTARN EQEPSGLDAL ASAAVLGDAL DDSSEVATTT RHPRHRVGCS CIVCIQPPSG KGRHKPTCGC TVCSTVKRRF KTLMMRRKKR QLERDGTAAV DEENKEGVEP EKNEGEKEGR IDLNSDPYNR EDAEAVAVEK GEESKKSEEG VCWGVSQGGG VLGETEVRGG EAEKTTSEEQ KVAS // ID A0A078EMN3_BRANA Unreviewed; 232 AA. AC A0A078EMN3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA02g23210D protein {ECO:0000313|EMBL:CDY02412.1}; GN Name=BnaA02g23210D {ECO:0000313|EMBL:CDY02412.1}; GN ORFNames=GSBRNA2T00114001001 {ECO:0000313|EMBL:CDY02412.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY02412.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY02412.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031934; CDY02412.1; -; Genomic_DNA. DR EnsemblPlants; CDY02412; CDY02412; GSBRNA2T00114001001. DR Gramene; CDY02412; CDY02412; GSBRNA2T00114001001. DR OMA; HYERVMI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 133 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 232 AA; 26405 MW; 8F72FC8EEAA4B763 CRC64; MVVAKQSPYE EFRLRRVEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV RRSSRISNAS SSSPVYKEAS ILIVVVQRVH LPRRVSKGRD LSNRVYVSEE IREEAFSKAE KLQADLRNRF PSFVKSMLQS HVSGGFWLGL PVHFCRSELQ KQDGVITLID EEGEEFETVY LAKRTGLSGG WLGFAVSHNL VYGDALVFEL VRPTVFKVYI TRVKSSGESP KM // ID A0A078EPE8_BRANA Unreviewed; 865 AA. AC A0A078EPE8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA07g11660D {ECO:0000313|EMBL:CDY01393.1}; GN ORFNames=GSBRNA2T00112376001 {ECO:0000313|EMBL:CDY01393.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY01393.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY01393.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031926; CDY01393.1; -; Genomic_DNA. DR EnsemblPlants; CDY01393; CDY01393; GSBRNA2T00112376001. DR Gramene; CDY01393; CDY01393; GSBRNA2T00112376001. DR OMA; INTELWH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 756 840 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 865 AA; 95983 MW; A49284A2B178C549 CRC64; MMASLACVED KMKTNGLVNG GTTTTTPQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP LVTLPQVGSL VYYFPQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVFPV PEFGLLRGSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA CPAEFVIPIA KYRKAICGSQ LSVSMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWAGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGETEWGSLI KRPFIRVSDS TNGILPYASF PNMASEQLMR MMMRPHNNNQ NATTSFMSEM QQNVLMRQGG LLGDMNMQQP PMVQQVQPES KLTVNPSASN TSGQEQNLPT QSMHAPSKSE KPTLSGCSSG RVSHCNEQQT MDQANQVCNE EKVNELMQKP VALSPCPDIS QQIYPPTNGF SFLETEELSS QVSSFQSLAG SYKQPLMDSS AVVLPDTTNS SLFHDVWDNQ LNGLKFDQFS PLMQQDLYGN NSTNSNILDP PPLSNTVLDD FCAIKETDFN CLVGNNNNNN STSFTQDVQS QITSASFADN SGGTGTSSSN VDFDDSSLLQ NSKGSWQQKL ATPRVRTYTK VQKTGSVGRS IDVTSFRDYK ELKSAIECMF GLEGLLTRPQ SSGWKLVYVD YESDVLLVGD DPWEEFVGCV KCIRILSPTE VQQMSEEGMK LLNSACINDL KTSVP // ID A0A078EQ05_BRANA Unreviewed; 291 AA. AC A0A078EQ05; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC02g11300D protein {ECO:0000313|EMBL:CDY02759.1}; GN Name=BnaC02g11300D {ECO:0000313|EMBL:CDY02759.1}; GN ORFNames=GSBRNA2T00114923001 {ECO:0000313|EMBL:CDY02759.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY02759.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY02759.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031937; CDY02759.1; -; Genomic_DNA. DR EnsemblPlants; CDY02759; CDY02759; GSBRNA2T00114923001. DR Gramene; CDY02759; CDY02759; GSBRNA2T00114923001. DR OMA; KIFNSHE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 33112 MW; DF2932E4CC7F7416 CRC64; MVFTPYPDFL IIYNSQDLSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWAVKWGISP EEEISFGDGW STFIAENDPL DGDFLQFSYD GSRSFMVSIF RGGLPVKPKA PVTIQDISDD DDEDKTAGDD GNEKKEEDYD QNMIISLSLG SSDEEYDADK TVCEVNKAHR TLERGSSSQR IRAQSIGDPE MYLDDPKNPC FIATSSSCRR MLVIAMQVIK DYDLKFDGTI KFIDGFGELE GKIGNWKDRV VVYPWQEIYQ RNHAKPGDVI ICEILREGDV VRSIKAHFVK K // ID A0A078ER28_BRANA Unreviewed; 600 AA. AC A0A078ER28; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC01g15800D {ECO:0000313|EMBL:CDY03502.1}; GN ORFNames=GSBRNA2T00116184001 {ECO:0000313|EMBL:CDY03502.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY03502.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY03502.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031943; CDY03502.1; -; Genomic_DNA. DR EnsemblPlants; CDY03502; CDY03502; GSBRNA2T00116184001. DR Gramene; CDY03502; CDY03502; GSBRNA2T00116184001. DR OMA; PEITASC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 68210 MW; 52F25A9F25E93495 CRC64; MTIGEEMYEE LWKLSAGPLV DVPQAEERVY YFPQGHMEQL EASTQQDLNT MKPLFDLPPK ILCRVMNVRL QAEKETDEVY AQIMLMPEGT VDEPMSPDPS LPEPQRPKFH SFTKVLTASD TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAEDVHGY KWKFKHIFRG QPRRHLLTTG WSTFVTSKKL VAGDTFVFLR GENGELRVGV RRANRQQTNM PSSVISSHSM HLGVLATACH ATQTRSMFTV YYKPRTSQFI ISLNKYLKAM NNKFSVGMRF KMRFEGDDSP ERRFSGTVVG VQDCSPHWKD SKWRCLEVNW DEPASFTRPD KVSPWEMEPF AASENVPQSV NKRARHVNEV SALDVGVPAS NFWSSALTQS HEFAQSCITS QRNPPQNSDW PVSPLNGQMV FPVEQKKPEI TASCRLFGID LMSSSLPAHE EKTAPMRPIN ITKPTLDSNT DPKSEISKLS EEKKQEPAQA SPKEVQSKQI NSSRSRTKVQ MQGVPVGRAV DLTLINGYVE LIDDLEKLFD IEGELKSRNQ WPNSKWLYFF VCGCSEFCNM VKRIFIWSKE EVKKMTPGNP LRILLTEVDT TISKTENYSD // ID A0A078ESV3_BRANA Unreviewed; 343 AA. AC A0A078ESV3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaC02g07720D protein {ECO:0000313|EMBL:CDY02663.1}; GN Name=BnaC02g07720D {ECO:0000313|EMBL:CDY02663.1}; GN ORFNames=GSBRNA2T00114798001 {ECO:0000313|EMBL:CDY02663.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY02663.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY02663.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031936; CDY02663.1; -; Genomic_DNA. DR RefSeq; XP_013676060.1; XM_013820606.1. DR EnsemblPlants; CDY02663; CDY02663; GSBRNA2T00114798001. DR GeneID; 106380775; -. DR Gramene; CDY02663; CDY02663; GSBRNA2T00114798001. DR KEGG; bna:106380775; -. DR OMA; FTHEANM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 299 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39309 MW; 571468D24070B709 CRC64; MVRNGGFGQI MEEGDSPGFF KILRREDLSS QLIRMIPHDI IRSISDDSSS FKMVLKVPWG SSWTVKISKN PSFHYMEDDG WTQFVNDNAL GENEYLTFTH ERNMRFNVNI YEPDGTEMLK PRESATIASS SGMNKREQRE GVYKHVKEEI VSSSESSYHS LKNAQGKKQE LNLGKKKAEE SKKNKKSMKK KKKVDSDLEE GTSSLVPEFS ITIRKSHLVF LGVPKVFVEM HMPKKTKWFK IRPEGKDSWD VLFLVTDTQS RFSAGWSRLS RELGLVIGDF CTFKLIKPTE MLVKVSRHGD DDDEDDIEED DDNDEEEAED ADDDDSDDED AEDDDDDADE SED // ID A0A078EUC1_BRANA Unreviewed; 685 AA. AC A0A078EUC1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA07g13830D {ECO:0000313|EMBL:CDY04557.1}; GN ORFNames=GSBRNA2T00118741001 {ECO:0000313|EMBL:CDY04557.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY04557.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY04557.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031955; CDY04557.1; -; Genomic_DNA. DR EnsemblPlants; CDY04557; CDY04557; GSBRNA2T00118741001. DR Gramene; CDY04557; CDY04557; GSBRNA2T00118741001. DR OMA; RNTENGL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 572 651 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 75888 MW; 9812551BD9136E9C CRC64; MEQERSLDPQ LWHACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR SETGDLCVGI RRAKRGGFLR DDEITTSKLM MMKRNATGGG GNANDANAPG GRVRVEAVAE AVARAACGQA FEVVYYPRAS TPEFCVKASD VRSAMRIRWC SGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP RKKLRIPQPF DFPFDGTKFP MFSPGFAAGN NGGGESMCYL STNDNNNNAP AGIQGARQAQ QLFGSPSPSL LSDLNLNTFH SGNKLQQSSS SPAMFLSGFN PRHHYDNIVV PRQTRDAEFN NNISCSLTIG NPGLVQDKKK SGSVKTHQFL LFGQPILTEQ QVMNRKRALE EEAEKEEKGG LTWNYGLQGI ETGHCKVFME SEDVGRTLDL SVIGSYQELY RKLAEMFGIE ERSDLLTHVV YRDANGVTKR IGDEPFSDFM RATKRLTIKM DISGDNVRKT WITGIRNGEN GIDSSTKTGQ LSIFA // ID A0A078EY32_BRANA Unreviewed; 271 AA. AC A0A078EY32; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA02g31970D protein {ECO:0000313|EMBL:CDY05494.1}; GN Name=BnaA02g31970D {ECO:0000313|EMBL:CDY05494.1}; GN ORFNames=GSBRNA2T00120419001 {ECO:0000313|EMBL:CDY05494.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY05494.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY05494.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031962; CDY05494.1; -; Genomic_DNA. DR EnsemblPlants; CDY05494; CDY05494; GSBRNA2T00120419001. DR Gramene; CDY05494; CDY05494; GSBRNA2T00120419001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 31144 MW; 0FFAC2F77B34AC79 CRC64; MTLNGVLDLL QENVKKPRFC KSLPLGENWK SKSMRIIPEE FVRSAHGAFE HRLVFSVSWG NSWQVWLQRD KNGLFMEEED WDEFVDDNLL CPNDILLFTH EDTMFTEVRI YKKDYRFFKQ VITAPLPPQV LNPKPNAPSS APPGFAPFAS ASASRARQSS SPVQNPEQYL VNPQNPYFVK TLSKKIDVLY VNQEVIQRYG LKFGPHLSPV HYLLPGEKHE AVIKIYRNAP CFNRWAAICK KYNKKEGDSV VCELERSGGV VTAVRVHFVD E // ID A0A078EYG8_BRANA Unreviewed; 306 AA. AC A0A078EYG8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaCnng01550D protein {ECO:0000313|EMBL:CDY07140.1}; GN Name=BnaCnng01550D {ECO:0000313|EMBL:CDY07140.1}; GN ORFNames=GSBRNA2T00123491001 {ECO:0000313|EMBL:CDY07140.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY07140.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY07140.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031975; CDY07140.1; -; Genomic_DNA. DR EnsemblPlants; CDY07140; CDY07140; GSBRNA2T00123491001. DR Gramene; CDY07140; CDY07140; GSBRNA2T00123491001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 35131 MW; CB5188C8E003590A CRC64; MASGSGNNNN NFNMAMGEHM FDKVLTTSDV GKLNRLVIPK QHAENYFPLE EIQNGTMLDF QDRNGKMWKF RYLYWSSSQS YVMTKGWVRF VKDKNLESGD TISFHRSYVL DDTEPGKRIK KLYVDWRHRA DRNLVHNINH HHHYPLFMPP TYPSAGYYPL SGYSMPHYQR LPPFYHNQFQ ERDFSGYGYG GPDYAGSPWG HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS AILPPHQPPQ EGTAKKLRLF GVDVEESSSS GEARGEMAVA GYSSSSPVVI RDEESSSAMQ LSEDEEYKRK GKSIDF // ID A0A078EZE4_BRANA Unreviewed; 781 AA. AC A0A078EZE4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA07g25390D {ECO:0000313|EMBL:CDY07460.1}; GN ORFNames=GSBRNA2T00124458001 {ECO:0000313|EMBL:CDY07460.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY07460.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY07460.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031978; CDY07460.1; -; Genomic_DNA. DR EnsemblPlants; CDY07460; CDY07460; GSBRNA2T00124458001. DR Gramene; CDY07460; CDY07460; GSBRNA2T00124458001. DR OMA; ESHHIVS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 677 761 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 781 AA; 87344 MW; D0F7B158C3B10026 CRC64; MNLSSSGFGH QSHEGKKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ PLTQEEQKDT FVPIELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT TFPMYPSLFP LRLKRPWHPG ASSFQDSRGD LTWLRGGAGD NGLLPLNYPS PNVFPWMQQR LDLSLLGTDQ NQQYQAMLAA GLQNFGGGGG GDPLRQQFVQ LQDPNHQYLQ QQSAPIIHSS DLQQHHQQQQ MPRHLLQAQP QILSENLPQQ NMRQEVSNQA QQPDRVWQHS DLLSPSDFTN KFTSAATNPQ VQQQNLTLQG SGDSSSHLLN FSITGQSEQL PTHDWSLKHS HHPETNYFSE PLSLGQGYGR ASPSLEPPPS TQNLSLFGVD SDSGLFLPTT VPRFGDTSSM PLADSGFQNT LQETTEVAAH GGVEHTNNFV KVYKSGSVGR SLDISRFSSY NELREELGRM FDIKGLLEDA FRSGWQLVFV DKEDDILLLG DDPWESFVNS VWYIKILSPD DVHKMGEHGE GSSFPQNLTH F // ID A0A078F092_BRANA Unreviewed; 295 AA. AC A0A078F092; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC01g09300D protein {ECO:0000313|EMBL:CDY06831.1}; GN Name=BnaC01g09300D {ECO:0000313|EMBL:CDY06831.1}; GN ORFNames=GSBRNA2T00123083001 {ECO:0000313|EMBL:CDY06831.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY06831.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY06831.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031973; CDY06831.1; -; Genomic_DNA. DR EnsemblPlants; CDY06831; CDY06831; GSBRNA2T00123083001. DR Gramene; CDY06831; CDY06831; GSBRNA2T00123083001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33159 MW; 73AA6F0A1E820CE6 CRC64; MVCVVQVVPA SYYDELPLVL PKTALLQGSD GGCFWKVAMV KRRDEVYFGQ GWSKFVEDNR LRDGDVLTFV YDGSRSFTVD IYGGSRACKE VRAVAQVISV DDDDDDYDKE DTNTSSEPEM AQTVPNAGNQ EDSNIIEPEV AQRVPRTRNK GKKGVVVQDS DDSFMSEDSN SLSDDSSYSP LNEDTLLDVT PKVTNSRKKG KLRSVSSNVG STSNSSRSVD YCLKFQDYVY YIDNHERGML EARVATWHDY RVSIKKWERI CQRNGLTKGD SLLCELFRKE GLVYAVKIHV VTTTS // ID A0A078F5Z3_BRANA Unreviewed; 248 AA. AC A0A078F5Z3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA05g27480D protein {ECO:0000313|EMBL:CDY08512.1}; GN Name=BnaA05g27480D {ECO:0000313|EMBL:CDY08512.1}; GN ORFNames=GSBRNA2T00000286001 {ECO:0000313|EMBL:CDY08512.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY08512.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY08512.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031986; CDY08512.1; -; Genomic_DNA. DR EnsemblPlants; CDY08512; CDY08512; GSBRNA2T00000286001. DR Gramene; CDY08512; CDY08512; GSBRNA2T00000286001. DR OMA; SSHNHHN; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28041 MW; 9D91E47968AA0590 CRC64; MSVNHYSNTL SSHNHHNEHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGDD KGVLLSFEDE SGKSWKFRYS YWNSSQSYVL TKGWSRYVKD KHLNAGDVVL FQRHRFDIHR LFIGWRRRGE ASSSSAVSQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI HQEYSHYGPV AETPTVAAGS SKTVRLFGVN LECHSDVVEP PPCPDAYNGQ HFYYYSTPHP MNISFAGEAM EQVGDGRG // ID A0A078F694_BRANA Unreviewed; 364 AA. AC A0A078F694; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA05g27900D protein {ECO:0000313|EMBL:CDY08554.1}; GN Name=BnaA05g27900D {ECO:0000313|EMBL:CDY08554.1}; GN ORFNames=GSBRNA2T00000337001 {ECO:0000313|EMBL:CDY08554.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY08554.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY08554.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031986; CDY08554.1; -; Genomic_DNA. DR EnsemblPlants; CDY08554; CDY08554; GSBRNA2T00000337001. DR Gramene; CDY08554; CDY08554; GSBRNA2T00000337001. DR OMA; YVIMLEL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 146 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 146 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 364 AA; 41440 MW; BC782446D3111D52 CRC64; MANASASSPM NPHFFQPLLP GFQSYLNIPM AFYSKHIKGT TDEGNANAGD KAVVKLRSDA SDLTWEVKMD GRRLTQGWQE FTTSHDLRVG DIVIFRHDGD LLFHVTTFGP SCCEIQYDDV FHKSSDSDLA MNQETRESVS PSDKSCFVAR VTPTNLRKDS LFLPRGFSRS NGLTNRECEI ILLNEYEKPW TASLIYYKTT GDVYIRTGWR RFCRENRKRV NGLLTFKLVQ AGTKPVLQLC SSMHNRDCLR ASSSRSQERF LTLTLTPYSL TKSKLCLPGK FVWLNGIENA RKITLVDRYG VKRTTSLRPD NNYGAMRMGK EWREFCEANG VKAGESFTLE LIKEEEEEEE DTAATHLLKF CTKA // ID A0A078F7Z0_BRANA Unreviewed; 329 AA. AC A0A078F7Z0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA02g06480D protein {ECO:0000313|EMBL:CDY09222.1}; GN Name=BnaA02g06480D {ECO:0000313|EMBL:CDY09222.1}; GN ORFNames=GSBRNA2T00001473001 {ECO:0000313|EMBL:CDY09222.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY09222.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY09222.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031993; CDY09222.1; -; Genomic_DNA. DR EnsemblPlants; CDY09222; CDY09222; GSBRNA2T00001473001. DR Gramene; CDY09222; CDY09222; GSBRNA2T00001473001. DR OMA; DKMICEL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 329 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5001734230. FT DOMAIN 40 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 37246 MW; 2806C29EDE011374 CRC64; MKPGFSFLLL PLFLILPLQE IDVFWFPFFV TVTPAEDCVP KFFRVYMPGI SGDDLELPVC FNSFLPKPLP KHVTVKSIYG KTWRMALRRC GGDAERYMLL NGWKRIAKDE SLTTGNVLEF QLDDDGSMCF NFSIYEPLTM CKRLRTTTSV QETEDADDVL VLSDDDDDDD FQDSDYSCAD DNDASAEDDD HGVAAGDDHV ALDGSDDDED AEANHDDDRR YLDDRSNAFF RVKINPKKIS QLRIPSKVIN DYGLSFSEAE SLNIIDPLVK KFGKLTKKIK VQTNGSVFIK GYGAIYRRNG VRSTDKMICE LKKAGNNNVV HTIKFHVIK // ID A0A078F8C8_BRANA Unreviewed; 1209 AA. AC A0A078F8C8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=BnaC03g63240D protein {ECO:0000313|EMBL:CDY09294.1}; GN Name=BnaC03g63240D {ECO:0000313|EMBL:CDY09294.1}; GN ORFNames=GSBRNA2T00001594001 {ECO:0000313|EMBL:CDY09294.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY09294.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY09294.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031994; CDY09294.1; -; Genomic_DNA. DR EnsemblPlants; CDY09294; CDY09294; GSBRNA2T00001594001. DR Gramene; CDY09294; CDY09294; GSBRNA2T00001594001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.10140; -; 1. DR Gene3D; 3.80.10.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR011713; Leu-rich_rpt_3. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000157; TIR_dom. DR InterPro; IPR000571; Znf_CCCH. DR Pfam; PF02362; B3; 1. DR Pfam; PF07725; LRR_3; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF01582; TIR; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52200; SSF52200; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50104; TIR; 1. DR PROSITE; PS50103; ZF_C3H1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Leucine-rich repeat {ECO:0000256|SAAS:SAAS00492074}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Repeat {ECO:0000256|SAAS:SAAS00492321}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}. FT DOMAIN 125 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 378 464 TIR. {ECO:0000259|PROSITE:PS50104}. FT DOMAIN 1078 1106 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DNA_BIND 125 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 1078 1106 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. SQ SEQUENCE 1209 AA; 135541 MW; C4B365A5A93CB9A0 CRC64; MDEDDKEYWE ELLEFNRQPR PSGSTADDAG EGINAASFKG MDEDDKENPF SSPLVLNEHL KKTQIGDEKK LNIPAGQQQQ QQQHNLCEKC LTTSDDLHRL VVTANKDACK YFPLATVFRS TDNFLQLEDE EGKPWMFEFS YLKVSQIYEF TEAWSSYVKE KQLGIGDFVF IQRHRTVSSR LSIGFRRRNN SLLYENPAPL TMSIGDGGSA LQSDNFQYNF QCHDPAPSTI SFMDGDAPLQ LTPPFQSDNF PCHDPAPSTM SFEDGGAALQ LDPCQDPFPC HDLAPPTISF GDGGAAPRDC IYLLADSVTS SETLEQPRVS GYSITGVDPI LVISCGYNQS SEERYFISYI FNELRLRGFA PLGYDLSRNP VNGNQDLLDK SQLGIIIFSM NYVSSSECMD GFVALMDHSK ANELMLFPVF FEVEFCNVKD QAGSFEKAFA QFENSVQASQ VLKWKAAVEE LTSTDRYHQY KKGDEVMLAK NIVRDVQVNS KTGSNLTASL QLSHILSLLN SWQSSAPHIV GLWGMAGIGK TTFSREIFRT QGERYDVCYF LPDFHQLCQT KGLNPLREEF LSKIFGEEKV FIDPCGTKLS FTRDRFRDKK VLIVLDGVSN ARDAEVLVGG FGWFSGGHTI ILTSRNRQVL VKCNAKEIYE IKKLSESDSI QLCRQFATEK NWKVRMSLIE ELVNYASGNP LALRALCSSI QKQCISDEEE HLSILHHHPP IEIRDAFGGI FSELDDNEKN TFLDLACFFK GENKDHVVNI LDGCGFLTDL GISGLIDESL ISLVDNRIEM PNVFQDMGRF VVRQEHEEAG KRSRLSDSSD IVDVLTNNSG TEIIEGIFLD ASGLKLKLSS NVFEEMDRLR LLKLHYPTSE NDCKVSLPEG LLSLPDELRL LHWERYPLES LPGNFNPENL VELNMPYSNL TKLWEGTENL EMLRRIILSH SRQLTDFSWL SMATNLEHID LEGCTSLVEV NSSSILHHRK LTFLSLKGCS HLRIIPSTAH LESLEVLNLS GCSELEHLED FSPNLTKIYL AGTAIKEIPS SIVTLTRLVT LDVGNCNRLQ HLPPEINLKA VVGFTPSQPG QPVCTSYFHT GICSKGPACS SDHPTLSTHK NTSSIASETQ VHVELIRALT HENPSSNNLE EVSTKKPRIH RTTSFVTSGT LDLNQQEIDF SFFNQPESSP PLGASLSEFS RGGRSNKVFQ IFGVSVNYM // ID A0A078F9V0_BRANA Unreviewed; 323 AA. AC A0A078F9V0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA05g27890D protein {ECO:0000313|EMBL:CDY08553.1}; GN Name=BnaA05g27890D {ECO:0000313|EMBL:CDY08553.1}; GN ORFNames=GSBRNA2T00000336001 {ECO:0000313|EMBL:CDY08553.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY08553.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY08553.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031986; CDY08553.1; -; Genomic_DNA. DR EnsemblPlants; CDY08553; CDY08553; GSBRNA2T00000336001. DR Gramene; CDY08553; CDY08553; GSBRNA2T00000336001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 76 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 110 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 224 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 76 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 110 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 224 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 36837 MW; D319B7149F1874C1 CRC64; MTFFSKHIRG TTNEDNAVVT LTSDASDKTW EVKMDGRRLT RGWQNFANGH GLRVGDIVIF RRDGDLLFHV TSFGPSCCQI LYDDVIQVFS DSEKYHQDTR EEGSPSDNSC FVARVTASNL SRDMLFLPRG FSRSNGLTNR KCEIILLNED GKPWKVFMSY HKTHGRVYIR TGWRRFCRQN RRRSNDLLTF KLVETGTKPV LQLCSSVYNR DCLRDSSSTS QDRFLTLTLT PYSLRKSKLC LPAAFLKSNG ITNARKIILV DRYGIKRTTS LKPDNNNGAM RMGKGWRELC KANGVKAGES FTLELIKEEG ETATHLLKFC TKV // ID A0A078FC73_BRANA Unreviewed; 870 AA. AC A0A078FC73; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC05g23210D {ECO:0000313|EMBL:CDY09598.1}; GN ORFNames=GSBRNA2T00031225001 {ECO:0000313|EMBL:CDY09598.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY09598.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY09598.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031997; CDY09598.1; -; Genomic_DNA. DR EnsemblPlants; CDY09598; CDY09598; GSBRNA2T00031225001. DR Gramene; CDY09598; CDY09598; GSBRNA2T00031225001. DR OMA; SLCHQQS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 727 811 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 870 AA; 96005 MW; 187E8DC83997CD60 CRC64; MRLSTAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHEDD MSMGMGMSSP LMWDRGLQSL NFQGMGVNPW MQPRLDASGL LGMQNDFQNP SGFSMQPPSL MQPQMLQQQL SQQQQQLSQQ QQQQSYLPVP ETHQPQSQSN NLLSQQQQVV DNHNQSASSA AAVSAMSQFG SASQSMTSLC QQQSFLDTNG GNNNPMSPLH TLLSNFSQDE SSQLLNLTRT TNSAAMTSSG WPSKRPAVDL SSFGNNSNTQ SVIEQLGQSH NTSNVPPNAV SLPPFPGGGR ECSIEQEGGS PSDPHSHLLF GVNIDSSSLL MPNGMSNLRS IGIEGGDSTT LPFTTSNFNN DFSGGNLAMT TPSSCIDEPG FLQSSENLGS ENQQSNNTFV KVYKSGSFGR SLDITKFSSY HELRSELARM FGLEGQLEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVSS VWCIKILSPQ EVQQMGKRGL ELLNSAPPSS NNNVVEKLPS NNGNCDDFGS RSDPRNRGNG IASVGGSFNY // ID A0A078FCD5_BRANA Unreviewed; 202 AA. AC A0A078FCD5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA05g17050D protein {ECO:0000313|EMBL:CDY10657.1}; GN Name=BnaA05g17050D {ECO:0000313|EMBL:CDY10657.1}; GN ORFNames=GSBRNA2T00048416001 {ECO:0000313|EMBL:CDY10657.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY10657.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY10657.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032005; CDY10657.1; -; Genomic_DNA. DR EnsemblPlants; CDY10657; CDY10657; GSBRNA2T00048416001. DR Gramene; CDY10657; CDY10657; GSBRNA2T00048416001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 106 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 106 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 202 AA; 23073 MW; 9093A206AD4DB721 CRC64; MVQPQEPHFF QPLLPGFQTY LTIPIVFFSK HIQGKTNGNT WTLTSDAMDQ TWQVIQEERR LTRGWKEFAE AHDLRIGDIV IHGLSQAHDH QNNRTGARFS YSWDYCFKAE VTDSNVREDK LDLPVGATGC NALNKECKKA KLVNIEGKAW NVSMRFNESG GFYYIKGWRK FCAENKCHIG DSFVFNECLK SAGDIASSSR VN // ID A0A078FF66_BRANA Unreviewed; 787 AA. AC A0A078FF66; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA05g11980D protein {ECO:0000313|EMBL:CDY10738.1}; GN Name=BnaA05g11980D {ECO:0000313|EMBL:CDY10738.1}; GN ORFNames=GSBRNA2T00048551001 {ECO:0000313|EMBL:CDY10738.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY10738.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY10738.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032006; CDY10738.1; -; Genomic_DNA. DR EnsemblPlants; CDY10738; CDY10738; GSBRNA2T00048551001. DR Gramene; CDY10738; CDY10738; GSBRNA2T00048551001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 291 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 539 589 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 291 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 787 AA; 85838 MW; 1A327CEAB01C7F7C CRC64; MFEVKMGSKV CMNASCGSTS SVEWKKGWPL RSGALADLCF RCGSAYETSR FCETFHMEQS GWRECYLCNK RLHCGCIASK LVVEFMDYGG VGCSTCTNSH SKRGENPGVF SRLPMNMQQT NGEIRSEANL FSQPLVSGDD KREEFTPHRG FGNLMKQDNN VTTTGYTHES SSSSPAQPSL NMALATLPYS PSFATPVVDG NKLMGAGGGG VASSQSHLFQ CSASSILQKP SKSVLGTPPP GTSKSAQARI GRPPVEGRGK GHLLPRYWPK YTDKELQQIS GNLNLNIVPL FEKTLSASDA GRIGRLVLPK ACAEAYFPPI SQSEGIPLKV QDVRGKEWTF QFRFWPNNNS RMYVLEGVTP CIQSMRLQAG DTVTFSRVDP GGKLIMGARK ATYTVDMQGC GFANGASNED TSSSGVTENL TSINAPSCPS QMLEGLPEHL GSPHGGNGLK KSEINGGDDP SRGKEKKRTR TLGAKNKRLL LHSEESMELR VTWEEAQELL RPSANAKPTV VVIEEHEFEE FEEPPVFGKR TIVVTSRPSG EQERWGSCDD CSKWRRLPVD ALLPAKWTCS DNVWDSSRCS CSAPEESLKE LENVLRAGKE YKKKRIGVSQ TARNEQEPSG LDALASAAVL GDALDESEVA TTTRHPRHRV GCSCIVCIQP PSGKGRHKPT CGCTVCSTVK RRFKTLMMRR KKKQLERDGT AAVDEENKEG VEPEKNEGEK EGRIDLNSDP YNREDAEAVA VEKREESKKS EGGVSWGVSQ GGGVLGETEV GGGEAEKTTS EEQKVTS // ID A0A078FFX5_BRANA Unreviewed; 625 AA. AC A0A078FFX5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA03g46370D {ECO:0000313|EMBL:CDY10978.1}; GN ORFNames=GSBRNA2T00048919001 {ECO:0000313|EMBL:CDY10978.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY10978.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY10978.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032008; CDY10978.1; -; Genomic_DNA. DR EnsemblPlants; CDY10978; CDY10978; GSBRNA2T00048919001. DR Gramene; CDY10978; CDY10978; GSBRNA2T00048919001. DR OMA; EDISSHW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 601 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 625 AA; 70590 MW; 246EBEBABC13DA2D CRC64; MYGELWKLCA GPVVDVPQAA ERVFYFPQGH MEQLEASTQQ DLNAVKPTKP LFDLPPKILC RVMDVRLQAE KDTDEVYAQI MLMPEGTVDE PMSPDPSPPE SQRPKVHSFS KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELV AEDVHGYQWK FKHIFRGQPR RHLLTTGWST FVTAKRLVAG DTFVFLRGEN GELRVGVRRA NRQQTNMPSS VISSHSMHLG VLATACHATQ TRSMFTVYYK PRTSQFIISL NKYLEAMSNK FSVGIRFKMR FEGEDSPERR FSGTVVGVKD CSTHWKDSNW RCLEVHWDEP ASISRPDKVS PWEIEPFVTS ENVPHSVMPK NKRPRHYSEV SALDVGKTAS NLWSSALTQS HEFAQSCITS QRNSPQQCYR DATEDAKNSD WSASPYSATL NNQMVFPVEQ KKPETTASYR LFGIDLLSSS IPATEEKTAP TLPINITKPT PDSNSDPKSE VSKLSEEKKQ EPAQASSKEV QSKEISSTRS RTKVQMQGVP VGRAVDLTVL NGYSELIDDL EKLFDIEGEL KSRNQWEIVF TDDEGDMMLV GDDPWPEFCN MVKRIFIWSK EEVKKMTPGN QLRKLLTEVD TTLTTTISKT ENHSN // ID A0A078FG76_BRANA Unreviewed; 301 AA. AC A0A078FG76; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA03g51680D protein {ECO:0000313|EMBL:CDY13450.1}; GN Name=BnaA03g51680D {ECO:0000313|EMBL:CDY13450.1}; GN ORFNames=GSBRNA2T00077744001 {ECO:0000313|EMBL:CDY13450.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY13450.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY13450.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032035; CDY13450.1; -; Genomic_DNA. DR EnsemblPlants; CDY13450; CDY13450; GSBRNA2T00077744001. DR Gramene; CDY13450; CDY13450; GSBRNA2T00077744001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 196 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 196 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 301 AA; 34473 MW; FC1CB09F915CE655 CRC64; MNCLNSMANP PLESPTNPHF FQPLLPGFDT HLTIPVAFFS KHIEEKNNDD DNVNHCSTNK TEPKSSFSFD YCFVAQVTAS NLRLDTLDLP METESSNALN KRCHEMIVVN KEGKYWTLSL RFRESSGSYY IRGAWRRFCR DNKQKIGDLM VFNLVGDGKT SPMICVCPEE ECSELVRKTK RRSNWVASSS SRRNRFVTIS LTRYNFRSSK LILPATFMKI NGIKKQNEII LMDKHGVKWV TKLVKDGSKY GKRGLGKGWK GFCEANDVLK IGEPFLLELV WEDTLPVLKF CSKVKVETIC D // ID A0A078FH33_BRANA Unreviewed; 292 AA. AC A0A078FH33; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA09g39540D protein {ECO:0000313|EMBL:CDY11388.1}; DE SubName: Full=BnaC08g31910D protein {ECO:0000313|EMBL:CDX76605.1}; GN Name=BnaA09g39540D {ECO:0000313|EMBL:CDY11388.1}; GN Synonyms=BnaC08g31910D {ECO:0000313|EMBL:CDX76605.1}; GN ORFNames=GSBRNA2T00049448001 {ECO:0000313|EMBL:CDY11388.1}, GN GSBRNA2T00127059001 {ECO:0000313|EMBL:CDX76605.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY11388.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY11388.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). RN [2] {ECO:0000313|EMBL:CDY11388.1} RP NUCLEOTIDE SEQUENCE. RA Genoscope - CEA; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK031808; CDX76605.1; -; Genomic_DNA. DR EMBL; LK032011; CDY11388.1; -; Genomic_DNA. DR EnsemblPlants; CDX76605; CDX76605; GSBRNA2T00127059001. DR EnsemblPlants; CDY11388; CDY11388; GSBRNA2T00049448001. DR Gramene; CDX76605; CDX76605; GSBRNA2T00127059001. DR Gramene; CDY11388; CDY11388; GSBRNA2T00049448001. DR OMA; DKLYIDW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 33001 MW; 51F6F588EFA174C1 CRC64; MNQENKKPLE EASTSMEREN MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DNSSTNNKGL LLDFEDRTGS SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR DPCNKDKLYI DWRRRPKIPD HHQFAGAMFP RFYSFPHPQM PTSFESSHNL YHHRFQRDLG IGYYPTAVIE SVPVIMQRRE AQVANMVSSR GEKRLRLFGV DMECGGGGGG SVNSTEEESS SSGGSMSRGG VSMAGVGSLL QLRLVSSDDE SLVAMEGASV DEDHHLFTTK KGKSSLSFDL DI // ID A0A078FIW5_BRANA Unreviewed; 847 AA. AC A0A078FIW5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC03g59640D {ECO:0000313|EMBL:CDY12048.1}; GN ORFNames=GSBRNA2T00060998001 {ECO:0000313|EMBL:CDY12048.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY12048.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY12048.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032017; CDY12048.1; -; Genomic_DNA. DR EnsemblPlants; CDY12048; CDY12048; GSBRNA2T00060998001. DR Gramene; CDY12048; CDY12048; GSBRNA2T00060998001. DR OMA; FNPHPHE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 708 792 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 847 AA; 93444 MW; CF0E88E450E237F7 CRC64; MRLSSAGFNP HPHEGEKRVL NSELWHACAG PLVSLPPLGS RVVYFPQGHS EQVAASTNKE VDAHTPNYPS LQPQLICQLH NVTMHADVET DEVYAQMTLQ PLNGQEQKDP YLAAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRAHR PQTVMPSSVL SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIC DLDPARWANS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPSG LPSFHGLKED DMGMGMGMSS PLMWDRGLQP MNFQGMGVNP WMQPRPLDAS GLLGMQNDAY QAMAAAALQD MRGIDPAKAA ASLLQFQNPS GFSVQPPSLV QPQMLQQQLT QQHQQQLSQQ QVVDNHNLSA SSAAMSQSNT SLLQSMTPLC HQQSFSDTNG GNNPITQLHT LLSNFPQDES SQLLNLTRTN SAMTSSGWPS KRPAIDSSFQ HSTAVNNNQS VMEQLGQSHT SNVSPNAVSL PPFPSGQEEN PSDPHSHLLF GVNIDSSSLL IPNGMSNLRS IGIEGGDSTT LPFTSSTFNN EFSGTMTTPS SCIEEQGFLQ PSENQQSNTF VKVHKSGSFG RSLDITKFSS YNELRSELAR MFGLEGQLED PVRSGWQLVF VDRENDVLLL GDDPWPEFVS SVWCIKILSP QEVQQMGKRG LELLNSAPSS TNVDKVPSNG NCDDLGNRSD PRSLGNGIAS VGGSFNY // ID A0A078FJC5_BRANA Unreviewed; 281 AA. AC A0A078FJC5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC06g14560D protein {ECO:0000313|EMBL:CDY13301.1}; GN Name=BnaC06g14560D {ECO:0000313|EMBL:CDY13301.1}; GN ORFNames=GSBRNA2T00071286001 {ECO:0000313|EMBL:CDY13301.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY13301.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY13301.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032034; CDY13301.1; -; Genomic_DNA. DR EnsemblPlants; CDY13301; CDY13301; GSBRNA2T00071286001. DR Gramene; CDY13301; CDY13301; GSBRNA2T00071286001. DR OMA; VECELLH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 31703 MW; 87AC1751D724D1F4 CRC64; MSESEEDVDL PRFFKVFLSE TASVSMAIPM SFNEHLEDPL PQTAKLQGIG GGVWTVSFKK IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGRSGCKEIR AEVETVELSD ANSDKEEEED SSVVADSNEE EDEGDDDSSF IAGEDDEVSQ SLSHVDSDDT VSNAEGFSNL EVESNPCFTT TLKNRIYELL IPANVVKEHG LTFCDRIKYI DGEGIMHGAK GKWSDDRICF KGWDRICRRN RLKERDTVHC EMLHIRKKVH TIKITVTRGR G // ID A0A078FJV8_BRANA Unreviewed; 485 AA. AC A0A078FJV8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA03g51640D protein {ECO:0000313|EMBL:CDY13446.1}; GN Name=BnaA03g51640D {ECO:0000313|EMBL:CDY13446.1}; GN ORFNames=GSBRNA2T00077739001 {ECO:0000313|EMBL:CDY13446.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY13446.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY13446.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032035; CDY13446.1; -; Genomic_DNA. DR EnsemblPlants; CDY13446; CDY13446; GSBRNA2T00077739001. DR Gramene; CDY13446; CDY13446; GSBRNA2T00077739001. DR OMA; IESENCS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 218 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 218 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 485 AA; 54129 MW; FE1D35F45938D4F5 CRC64; MVDPVMASST KKPIFIVDLS GQNSNPMIPD SFVSNHLKGN VQSTKLMKLT SDASVRTWEV ELDGQRFGRG WKHFSDHHYK TLSKKRARTE TESSSENTYL VAHATPSSLS RNQMYLPSKF ARVNGLNNRQ CEIDLRDEHG KSWTLDLTHH KSTGQAFVSN GWTSFCKANG IKAESFRRFK LVQTGTKPVL QLCPNTEGGD EIESEDCSEP SSMNQNKIVA IELKPYMLKS GRVRVPASFG RANGINEVGK ITIVNKDGVE WKLHLGDMKG RELFYIRGLR DCFVANGIKK VGDSFTLEAI RGGTNAILKI CSKEASFDGY KTPQPRMIQA SQDEEKKETK VQKKSRVSAV GPSHRTRASN RSSVGPSNLQ PKQPPQPCSI SDQVAKVKQC VVDALTDVRQ FRSELEVKER NLEAALLEID VLGSSNAAAL IARWRRQLQK ENPLTPLTSP VPEQGDLSMT HQLAKLRHRI VNTLTSVRPF RSELD // ID A0A078FKB4_BRANA Unreviewed; 357 AA. AC A0A078FKB4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=BnaA03g51650D protein {ECO:0000313|EMBL:CDY13447.1}; GN Name=BnaA03g51650D {ECO:0000313|EMBL:CDY13447.1}; GN ORFNames=GSBRNA2T00077740001 {ECO:0000313|EMBL:CDY13447.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY13447.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY13447.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032035; CDY13447.1; -; Genomic_DNA. DR EnsemblPlants; CDY13447; CDY13447; GSBRNA2T00077740001. DR Gramene; CDY13447; CDY13447; GSBRNA2T00077740001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 312 336 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 357 AA; 40782 MW; 29077DE0C8881D5C CRC64; MVNASLLSPA TPHFFQPLLS GSKSHLNIPV KFFSEHIEGK HEGKMVMLRS DASEKTWKVK MEGQRLTQGW KEFVEEHVLR VGDFVVFRLE RDMLFNVTAL GSSYCEIQYT PSGSRRQDDE EESVETEKEI KKNLTRFVTL TPTSSSFETG KQHLPASFTR GNGLIKPGKI IMVDKKGDEW VMELKVGKTN VSIMYMYIMS RNGWRIFCGV NGVRAGESLT LELIRGGESP MLKFCSKMEQ TSFEAEARAH KRAKWSQEIR EKTAEEGEPS HRARASNKTN ANKKNLQNKQ PCSVSDQLTE VKHCVVSTIT SIRRFREELK TKEQELEGSL QEINNLVPCW HTERKMQRNQ TTSSSNN // ID A0A078FKC2_BRANA Unreviewed; 665 AA. AC A0A078FKC2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE RecName: Full=Methionine aminopeptidase {ECO:0000256|RuleBase:RU003653}; DE EC=3.4.11.18 {ECO:0000256|RuleBase:RU003653}; GN Name=BnaA06g33420D {ECO:0000313|EMBL:CDY13581.1}; GN ORFNames=GSBRNA2T00077984001 {ECO:0000313|EMBL:CDY13581.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY13581.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY13581.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Removes the N-terminal methionine from nascent proteins. CC The N-terminal methionine is often cleaved when the second residue CC in the primary sequence is small and uncharged (Met-Ala-, Cys, CC Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. CC -!- CATALYTIC ACTIVITY: Release of N-terminal amino acids, CC preferentially methionine, from peptides and arylamides. CC {ECO:0000256|HAMAP-Rule:MF_03174, ECO:0000256|RuleBase:RU003653}. CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Note=Binds 2 divalent metal cations per subunit. Has a high- CC affinity and a low affinity metal-binding site. The true nature of CC the physiological cofactor is under debate. The enzyme is active CC with cobalt, zinc, manganese or divalent iron ions. Most likely, CC methionine aminopeptidases function as mononuclear Fe(2+)- CC metalloproteases under physiological conditions, and the CC catalytically relevant metal-binding site has been assigned to the CC histidine-containing high-affinity site. {ECO:0000256|HAMAP- CC Rule:MF_03174, ECO:0000256|RuleBase:RU003653}; CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- SIMILARITY: Belongs to the peptidase M24A family. Methionine CC aminopeptidase type 1 subfamily. {ECO:0000256|HAMAP- CC Rule:MF_03174}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032037; CDY13581.1; -; Genomic_DNA. DR EnsemblPlants; CDY13581; CDY13581; GSBRNA2T00077984001. DR Gramene; CDY13581; CDY13581; GSBRNA2T00077984001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070006; F:metalloaminopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0070084; P:protein initiator methionine removal; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd01086; MetAP1; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR HAMAP; MF_01974; MetAP_1; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000994; Pept_M24. DR InterPro; IPR001714; Pept_M24_MAP. DR InterPro; IPR002467; Pept_M24A_MAP1. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00557; Peptidase_M24; 1. DR PRINTS; PR00599; MAPEPTIDASE. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR SUPFAM; SSF55920; SSF55920; 1. DR TIGRFAMs; TIGR00500; met_pdase_I; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Aminopeptidase {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Protease {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 205 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 205 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT METAL 511 511 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 522 522 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 522 522 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 584 584 Divalent metal cation 2; catalytic; via FT tele nitrogen. {ECO:0000256|HAMAP- FT Rule:MF_03174}. FT METAL 618 618 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 649 649 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 649 649 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT BINDING 494 494 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_03174}. FT BINDING 591 591 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_03174}. SQ SEQUENCE 665 AA; 73649 MW; 5494549E24EF87DE CRC64; MDAASSVDES STSTDSVHTP AKIPPATARK SPSPASLYRM GSGSSVVLDS ENGVEAESRK LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA RAYDVAAHRF RGRDAVTNFK ADTTLGNGDE VEFLNAHSKA EIVDMLRKHT YKEELEQRKR NLHGKGNTKE TAFAAVRVAT GFKTAETLFE KAVTPRDVSV RGTLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNGQDQQ LYIGWKSKSE SDQDTGRVVV RLFGVDITSL KSQSDVVMKE ETEMLSLRCN KKQRLNVPAK MSFGISQSHS LFNGGQLTPP IYFAGAPANL SSLLLSVKKK KSSFSPRISR IQELQNTLQV KRNAPLVCGR VSPRLHVPDH IPKAPYLESS EPPKISSEHQ FPDSNGIVKM KAACELAARV LNYAGTLVKP FVTTDEIDKA VHKMVIESGA YPSPLGYGGF PKSVCTSVNE CMFHGVPDSR QLQDGDIINI DVAVYLDGYH GDTSKTFLCG DVDESLVQLV KVTEECLEKG ISVCRDGASF NEIGKIISEH AEKHGYNMER FIGHGVGTVL HSEPLIYLHK NYDFEIGYMI EGQTFTLEPI LTIGTTEFVT WPDKWTILTA DGGPAAQFEH TILITESGAE ILTTS // ID A0A078FKU1_BRANA Unreviewed; 327 AA. AC A0A078FKU1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC07g16400D protein {ECO:0000313|EMBL:CDY12793.1}; GN Name=BnaC07g16400D {ECO:0000313|EMBL:CDY12793.1}; GN ORFNames=GSBRNA2T00070403001 {ECO:0000313|EMBL:CDY12793.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY12793.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY12793.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032027; CDY12793.1; -; Genomic_DNA. DR EnsemblPlants; CDY12793; CDY12793; GSBRNA2T00070403001. DR Gramene; CDY12793; CDY12793; GSBRNA2T00070403001. DR OMA; SHESWLC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37683 MW; AEA2892213D4FA70 CRC64; MVETSEKTSS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKRVVLVDEI GRLWDVETKT GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR FRVSVEKEPV IVKPVGISIK PEPWEDCGKR VMQNRKRVLV REEASVLGDI EPGHRRNTRK KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRNIAV GSLRLLEIPT TFLKANGIEL EEGQDIELCD ENGKKWPLKI EKHGRGYIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT CSQILVRIFR GTLLTTAAKS GYHVLSM // ID A0A078FKZ1_BRANA Unreviewed; 315 AA. AC A0A078FKZ1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA06g32660D protein {ECO:0000313|EMBL:CDY13657.1}; GN Name=BnaA06g32660D {ECO:0000313|EMBL:CDY13657.1}; GN ORFNames=GSBRNA2T00078078001 {ECO:0000313|EMBL:CDY13657.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY13657.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY13657.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032037; CDY13657.1; -; Genomic_DNA. DR RefSeq; XP_013647514.1; XM_013792060.1. DR EnsemblPlants; CDY13657; CDY13657; GSBRNA2T00078078001. DR GeneID; 106352420; -. DR Gramene; CDY13657; CDY13657; GSBRNA2T00078078001. DR KEGG; bna:106352420; -. DR OMA; QEASHEK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 35705 MW; 97B808CC540B8FCA CRC64; MGEAGYAHDV ETKVSALMAS VDHLPMFGSG SGHDNGYLSA SVPLLGVNWK KRRMPRQRRS SSSFNLLYFP TLPPSSHVPT HLPARKIDTG KLRFLFQKEL KNSDVSSLRR MILPKKAAEA HLPALEYKEG IPLEMEDLDG LHVWTFKYRF WPNNNSRMYV LENTGDFVST HCVQPGDFIM FYQYLDSCNY VIQAKKAYEE EEEEDITNVE EDDVYTNLTR IENTVLNDLP LPDYNQHYNN NNNEKCSYVY PAFDDVTATT TNAPFVYDTT ALSSNDTPLD YLGGPATTTS TNSYYSELGP FEGFGSVENI SLDDF // ID A0A078FMA0_BRANA Unreviewed; 770 AA. AC A0A078FMA0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA03g51860D protein {ECO:0000313|EMBL:CDY13468.1}; GN Name=BnaA03g51860D {ECO:0000313|EMBL:CDY13468.1}; GN ORFNames=GSBRNA2T00077769001 {ECO:0000313|EMBL:CDY13468.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY13468.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY13468.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032035; CDY13468.1; -; Genomic_DNA. DR EnsemblPlants; CDY13468; CDY13468; GSBRNA2T00077769001. DR Gramene; CDY13468; CDY13468; GSBRNA2T00077769001. DR OMA; WRECISC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0016743; F:carboxyl- or carbamoyltransferase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.1370; -; 1. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 283 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 512 562 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 283 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 770 AA; 85221 MW; E29EB82FD6E203AA CRC64; MESTKVCMNA QCGSTSTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELVDNGGVTC ISCAKKSGLF SMNVESNGRE FPTFASAEHV SSVLERTNLK HLLHFQRISP TQPFLQMKQE ESLLPARLEA LRHNTEKKES AQPNLSISLG PTLMTSPFHD VDDRSKTTTP IFQLASRSRQ LLPKPANSAP TTAPPMEPNG SLVSQIHVAR PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ YPHLSNSKII PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT EPEGKLVMGY RKATNSTASQ MFKGSSEPNL NMFSNNLSSG CGDINWSKLD KSEDMSKDGL MLQPSLISAR KRVRNIGTKS KRLLIDSVDV LELRLTWEEA QELLRPPQSA KPSICTVEDH DFEEYDEPPV FGKRTVFVSR QTGEQEQWVQ CDACAKWRRL PVDTLLPPKW LCSDNLLDPG RSSCSAPDEL TPREQDTLLR LSKEFKRRRL ASSNQEEASA LDTLANAAIT TTGEQGETEV AATTKHPRHR AGCSCIVCSQ PPSGKGKHKP SCTCTVCEAV KRRFKTLMMR KRNRGEAGQA SQQAQSDQCR EETEAESIPA VELPAAGGNI DLNSDPASRV SMMSLLQAAT FPLEVYLKQK GVPNTAADQQ SSDIVSTENG SSSAAQEHDR DTSGAPEPMN // ID A0A078FN57_BRANA Unreviewed; 523 AA. AC A0A078FN57; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA04g12310D protein {ECO:0000313|EMBL:CDY15880.1}; GN Name=BnaA04g12310D {ECO:0000313|EMBL:CDY15880.1}; GN ORFNames=GSBRNA2T00090240001 {ECO:0000313|EMBL:CDY15880.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY15880.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY15880.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032059; CDY15880.1; -; Genomic_DNA. DR EnsemblPlants; CDY15880; CDY15880; GSBRNA2T00090240001. DR Gramene; CDY15880; CDY15880; GSBRNA2T00090240001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.160.20.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012334; Pectin_lyas_fold. DR InterPro; IPR011050; Pectin_lyase_fold/virulence. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF51126; SSF51126; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 401 499 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 317 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 401 499 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 58415 MW; 08121C3A6E8CA50E CRC64; MASSSSSSSS SIDFSTAILI RVDQSGKGDF NKIQEAIESI PPNLNNSQLY FIWVKPGVYS DRFGKKQTLN TAHARFVDKT DNVIRGVPAA PTVVTGNGQD ISAHPDKHVL DGNANTIINI IQNISEYSTP PSSPQNIQVG NKTPSIEGVA KPGFATPDPA TDCGAMSAHS QNHSRHTDNI IPLEDVNTVP PHFIETPSFS LGLTQEEHIR SAEPLTRQKV ADLTTLSDIN VGDNIAYPQS LRKSKRQKTL PPALLHDYLC GPHIDSRLHR PRESVFVCYE RREIERKINV LSRKLSVNVS YSSYVGLRAE INKPWKLRSD ASDQIWEVIR EGRTLTKGWK EFTEAHDLRI GDIVIFKHEG DMVFHVTPFG PSCCEIQYTH PHIVKEEADA DDAPTFSYDY CFLAEVTPTN QKDDKMFLPV EAMRCGALNQ QCKEVKLVNK EGKSWTARFG FSESDGAYYI SRGWRKFCRD NRCTNGDLFV FNVVGDGTTT PLLCVCPERK ECTELLIKHF SRIDGIIAST SRN // ID A0A078FP00_BRANA Unreviewed; 1005 AA. AC A0A078FP00; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA09g29140D protein {ECO:0000313|EMBL:CDY16180.1}; GN Name=BnaA09g29140D {ECO:0000313|EMBL:CDY16180.1}; GN ORFNames=GSBRNA2T00090623001 {ECO:0000313|EMBL:CDY16180.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16180.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16180.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032061; CDY16180.1; -; Genomic_DNA. DR EnsemblPlants; CDY16180; CDY16180; GSBRNA2T00090623001. DR Gramene; CDY16180; CDY16180; GSBRNA2T00090623001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 7. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 7. DR SUPFAM; SSF101936; SSF101936; 7. DR PROSITE; PS50863; B3; 7. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 278 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 447 543 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 628 726 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 741 836 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 905 1004 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 278 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 447 543 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 628 726 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 741 836 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 905 1004 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1005 AA; 113085 MW; 95DA972BA8E064D8 CRC64; MKCSTMAYDQ SLHSPNNPHF FQPLLPGFHT HLNIPVAFFL KHVQESNDHI KTAKLTTDAS AKTWLVKVDG VRLTDGWEDF AVGHDLRIGD ITIFRHEGEM VFHVTAFGPS CCDIQYTSAS SHNINDDSQD QTNNAVTGNS SGEKRKRVKK NPRTKEDSSS DHSQFVAHVS PSSLSSDRLY IPTGFARSNG LDNMSGKEII VLLNEEGRSW NLNMTYNKVG MQTFVRPGWR RFCAENGMKK GHHYTFKLVR RSAPLVIRLS HAEHEPELAP ESSLHHSYFV GSVSSNSLIM DKLYLQRHFV TANGLEKGLI EITLKNEWGG SWILGLKHYE SSNRTFLGPG WKTFCQLNGI KAEDSFMFKL VETGDKPVLL LCTSNRGKTP LDCSEDRDDV DSLSSDTSSE DDSKEESQES DKESIEDEDR SQQCIVMEKE NNSLRCICSS PYSKHRFVRL SLTQSALKTS VLYLPLAFTR MNCINKPIKI MLLGKDGVKK HVVDLLKNKS TGAMRFGKGW REFCDAHGVK VGESFQLELF REDEEAIPVL KHEGKMVFHV TAFGPSLCEF QYTSASSHNI NDVSDDDHTN KTGKLLFYEM YSNSAEKDAI TGNSSGEKRK RVKKNPRTKE ESSSDHSHFV AHVTPSSLSC DRLYVPKGFA MSNGLDNMSG KEIVLLNEEG RSWNLNITYN ESGMHTFVRP GWRRFCAENG MNQGHHCTFE LVRKSAPPIL RLSRAEHDPK PAPESSLHHS NYVGSVSSNS LRKDKLYIQR KFVNANGLKG LSEIVLKNEL GGSWNLGLRY YESLNHTYLG PGWKTFCQVN GIKTGDSFMF KVVETGDKPV LLLCTTNRGK TPLDCPEDSN DVNSLSSDTG SGESQESEEE SLEDDDSSSE EIFEMVKREN SSRCRASSSY SQDRFVKLTL TPRALKTYKL MLPLDFTRVN GINKPGKITL LDKDGVKKQV VDLLDQNRNI GIMRLGKGWR EFCDAHGVKV GQSFLLELIW EDEEAIPVLK FCTKL // ID A0A078FPU9_BRANA Unreviewed; 672 AA. AC A0A078FPU9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=BnaC03g44820D protein {ECO:0000313|EMBL:CDY15121.1}; GN Name=BnaC03g44820D {ECO:0000313|EMBL:CDY15121.1}; GN ORFNames=GSBRNA2T00085286001 {ECO:0000313|EMBL:CDY15121.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY15121.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY15121.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032051; CDY15121.1; -; Genomic_DNA. DR EnsemblPlants; CDY15121; CDY15121; GSBRNA2T00085286001. DR Gramene; CDY15121; CDY15121; GSBRNA2T00085286001. DR OMA; EIWLDDH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 525 627 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 525 627 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 672 AA; 74258 MW; 1B7B76EEF47E0F35 CRC64; MKTLHVAAKG GDLAEGCGIL AGDADETILM DGIGDVGREI WLDDHGGDHG HGHREEDDII VHHDPSMFYG DLPTLPDFPC MSSSSSSSTS PAPVNAIVSS ASSSSAASSS TSSAASWAIL KSDGEDPTTQ NQNQYASGNC DVESSAALHN EFFDTSAIFN QDEDTQNPNL MDQTLERQDQ IVVPMLENNN NNSGGDMQVM NHSLEQEDDL AAVFLEWLKN NKETVSADDL RKVKIKKATI ESAAKRLGGG KEAMKQLLKL ILEWVQTNHL QRRRTNNNNL SYQQDPFQNP NLIPPSDQTC FSPSTWVPPP PQPPPPQQPA FVSDPGYGYM PAPNYPPQEY LPLLESPPTW PPPQSGPMPL QQFTMPNPQY TPFQDPGGGF TGYNMNPYQY PYLPSSGQMR DQGLLRLCSS ATKEARKKRM ARQRRFLSHH HRHNNNQQNQ TQIGEVCGAV DPQLNHVPTT ATGGTWMYWP NVPAMPPPVS SQLPAMETQL PTMDRAGSSS VMPRQQVVPD RRQGWKPEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH LPELEARDGI SLAMEDIGTS RVWNLRYRFW PNNKSRMYLL ENTGDFVKTN GLQEGDFIVI YSDVKCGKYL IRGVKVRQPA GQKPEASSSA AVTKRQSKSQ RSINNNSPSA NIVASPPSQA VK // ID A0A078FQ45_BRANA Unreviewed; 1042 AA. AC A0A078FQ45; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC09g37130D {ECO:0000313|EMBL:CDY16560.1}; GN ORFNames=GSBRNA2T00094351001 {ECO:0000313|EMBL:CDY16560.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16560.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16560.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032065; CDY16560.1; -; Genomic_DNA. DR EnsemblPlants; CDY16560; CDY16560; GSBRNA2T00094351001. DR Gramene; CDY16560; CDY16560; GSBRNA2T00094351001. DR OMA; GTDMESA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 915 1008 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1042 AA; 110812 MW; F5D45E48EDB38EA9 CRC64; MKAPSSNGVS PNPLEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMTLQ PVNKYDRDAL LASDMGLKIN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIFRGQPKRH LLTTGWSVFV STKRLFAGDS VLFVRDGKGH LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDGTDMESA LKRAMPWLDN GLEMKDPSST IFPGLSLVQW MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDPSN NAPVTSAANY VVSTTAAAAV VALLFEPSAT AITASATTTI ASASASASAA ATTTTITASA ATTTITAASA AATTIAAATP STTASATPST TATATDSAAA ATTTAAVKNA ATAISYAPTQ FQLPQNQLYN GHQATQQHQA QQTSMHHLQP QVVSGSIASS VIAPPRTVFT TNGTAAASWS CPGTQSATAE NSTVTGSTNI PAESLGTTAF TVSAVAEVTT AATTTAAISF SRKLEFAFSV TPPTAAKPAV SAATFSLSRG AKAYSGITDG GDAPSSSTSP STNNCQISSS TFLNRSQSGP AILIPDPAVD VSGSLVQDLY SKSDMRLKHE LVSQQKPKAS LTDHQLEAQQ NFLSPNFGLD GDSRNSLFGG GGNVENGFVP ETLLSRGYDS QKDLQNMLSN YGGVTNDIGT EMSTSAVRTQ SFGIPNVPAI SNDLAVNDAG VLGGGLWPTQ TQRMRTYTKV QKRGSVGRSI DVNRYRGYDE LRHDLARMFG IEGQLEDPLT SDWKLVYVDH ENDILLVGDD PWEEFVNCVQ SIKILSSAEV PQLSLDGNFA GLPATNQACS GGDNGNGWRG QYDDNSATSF NR // ID A0A078FS55_BRANA Unreviewed; 680 AA. AC A0A078FS55; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC04g15900D {ECO:0000313|EMBL:CDY15734.1}; GN ORFNames=GSBRNA2T00089963001 {ECO:0000313|EMBL:CDY15734.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY15734.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY15734.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032057; CDY15734.1; -; Genomic_DNA. DR EnsemblPlants; CDY15734; CDY15734; GSBRNA2T00089963001. DR Gramene; CDY15734; CDY15734; GSBRNA2T00089963001. DR OMA; HQLDHGM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 567 646 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 680 AA; 75552 MW; 11B18C5CF024B7CA CRC64; MEQERSLDPQ LWQACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR SETGELCVGI RRAKRGGFLR DDEITTSKLM MMKRNGGNVN DANAPGGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF CVKASDVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPRKKL RIPQPFDFPF DGTKFPMFSP GFAAGNNGGG ESMCYLSNDN NNNAPAGIQG ARQAQQLFGS PSPSLLSDLN LNTFHSGSKL QQSSSSPAMF LSGFNPRHHY DNIVLPRQTR DAEFNNNISC SLTIGNPGLA QDKKKSDSVK THQFLLFGQP ILTEQQVMNR KRALEEEAEE EEKGGLTWNY GLQGLETGHC KVFMESEDVG RTLDLSVIGS YQELYRKLAE MFGIEERSDL LTHVVYRDAN GVTKRIGDEP FSDFMRATKR LTIKMDISGD NVRKTWITGI RNGENGIDSS TKTGQLSIFA // ID A0A078FSD6_BRANA Unreviewed; 322 AA. AC A0A078FSD6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=BnaC05g00870D protein {ECO:0000313|EMBL:CDY15208.1}; GN Name=BnaC05g00870D {ECO:0000313|EMBL:CDY15208.1}; GN ORFNames=GSBRNA2T00085396001 {ECO:0000313|EMBL:CDY15208.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY15208.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY15208.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032052; CDY15208.1; -; Genomic_DNA. DR EnsemblPlants; CDY15208; CDY15208; GSBRNA2T00085396001. DR Gramene; CDY15208; CDY15208; GSBRNA2T00085396001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 322 AA; 36800 MW; E40D016E3CC84AAC CRC64; MDLSLAPTSS DQEQDKDQEL ASNIGASSSS GTANNTNFPM MMIPPPEKEH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DSTNNQNGTL LNFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG IGDESQRSKL YIDWRHRPDM SLVQAHQFGN YGFNFNFPTT SQYSNRFHPL PEYSSVPIQR SLNIGNHQRS YYNNQRQEFV GYGYGNLAYY TGSPLDQRSI VGPEPLVIES IPVVPGRLPP VMMLPPPLPP PPSTAGKRLR LFGKWVLLLR QLSDSIYRMI MMMADDQFAK KGKSSFSLDF SP // ID A0A078FU24_BRANA Unreviewed; 218 AA. AC A0A078FU24; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA08g02660D protein {ECO:0000313|EMBL:CDY16501.1}; GN Name=BnaA08g02660D {ECO:0000313|EMBL:CDY16501.1}; GN ORFNames=GSBRNA2T00091100001 {ECO:0000313|EMBL:CDY16501.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16501.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16501.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032064; CDY16501.1; -; Genomic_DNA. DR EnsemblPlants; CDY16501; CDY16501; GSBRNA2T00091100001. DR Gramene; CDY16501; CDY16501; GSBRNA2T00091100001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 218 AA; 25108 MW; DD960913D6696004 CRC64; MKSNMNTSRR SSARITSAAT QRQQKPEPEP GVKKFIKMIL LSTIKEKMMK IPARFVRLGP KLTDTVTIQT PVGFKRSIRI KRTGDQVWFE KGWNEFAEAH SISQGHFLYF CYEGNSSFRV MIFDVSASEI DYPMDKVHCI ESDDEVMEVM DTDDEEGFTR VDSSDNDSSD EEAIDLEKLL KKKLRVNVKS ETINIGNVSR LKLKSCGFFF FFFFFSCV // ID A0A078FUJ3_BRANA Unreviewed; 225 AA. AC A0A078FUJ3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA08g02650D protein {ECO:0000313|EMBL:CDY16502.1}; GN Name=BnaA08g02650D {ECO:0000313|EMBL:CDY16502.1}; GN ORFNames=GSBRNA2T00091101001 {ECO:0000313|EMBL:CDY16502.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16502.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16502.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032064; CDY16502.1; -; Genomic_DNA. DR EnsemblPlants; CDY16502; CDY16502; GSBRNA2T00091101001. DR Gramene; CDY16502; CDY16502; GSBRNA2T00091101001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 25820 MW; 0B5192928EC283DF CRC64; MDSTHSEFNK RARLFEDHQN KDAKVIHPMI PESTTPLDKG YDASTTTQNL FNESKPEVAT PKVLKKRGRK KKNPNPEEVN SSTPRGDDSE NRSKFYESAS ARMRTVTAEE RERAITAAKA YEPTNPFFRV VLRPSYLYRG CIMYLPSGFA EKYFSGISGF IKIQLGEKQW PVRCLYKAGR AKFSQGWYEF TLENNIGEGD VCVFELLSTR DFVLKVTAFR VNQYV // ID A0A078FUQ9_BRANA Unreviewed; 358 AA. AC A0A078FUQ9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA09g28670D protein {ECO:0000313|EMBL:CDY16133.1}; GN Name=BnaA09g28670D {ECO:0000313|EMBL:CDY16133.1}; GN ORFNames=GSBRNA2T00090567001 {ECO:0000313|EMBL:CDY16133.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16133.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16133.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032061; CDY16133.1; -; Genomic_DNA. DR EnsemblPlants; CDY16133; CDY16133; GSBRNA2T00090567001. DR Gramene; CDY16133; CDY16133; GSBRNA2T00090567001. DR OMA; IDWKEIT; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 188 300 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 188 300 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 39607 MW; 13FF3B72D943B2B1 CRC64; MDNSCIDDST SNTSGSLSTS TPSAKKKLSP PPPPPATMRL YRMGSGGSSV VLDSENGVET ESRKLPSSKF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE EEAAASYDIA ARRFRGRDAV TNFKSPALDG TDAESAFLEA HSKAEIVDML RKHTYADELQ QSKRKFLDGT AAMSKGNDGV SRAREVLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLPAMT TATVVTAMTP SPTKGVLINL EDRTGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVCFERSTGP DRQLYIDWKE ITPVQSVVRL FGVNIFNATT NAKPNDVAVE CGGKKRSREV DLFALGCSKK QTMMINAL // ID A0A078FUZ4_BRANA Unreviewed; 340 AA. AC A0A078FUZ4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA09g20100D protein {ECO:0000313|EMBL:CDY16632.1}; GN Name=BnaA09g20100D {ECO:0000313|EMBL:CDY16632.1}; GN ORFNames=GSBRNA2T00094464001 {ECO:0000313|EMBL:CDY16632.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16632.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16632.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032066; CDY16632.1; -; Genomic_DNA. DR EnsemblPlants; CDY16632; CDY16632; GSBRNA2T00094464001. DR Gramene; CDY16632; CDY16632; GSBRNA2T00094464001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38399 MW; 716A3B7E94B583FE CRC64; MDRLLQSMKE PKFQLCTCRE RKKKEQLSSR FVEITPSLYS FEKGRQQLPD TFTKVNKLEP GEIILLAEDG VTYTMMLKLK KNGGSRCYLH IKSPTWEKFC LANEVRAEET FILELTEKRE LKFFSKYDNE TERTGSLNEK EPNLVQQVLT SQRHQTSEFR STCPEEEHEH SGCSDVLPRA IEEEECVALT PYPTVSDETK KQHNIQDIHI RELTYITTQP GVLEADESYT TPFACQIQQL HFLESSGNTS TASQDSSKGR TRAKYLKERF VSTPTSAEPH IAGQGAVSDQ DECSLPSPLV GTNQADLSSA NYCSRNWSNL IMPLVHEGFV ESSAGVAAPG // ID A0A078FVD8_BRANA Unreviewed; 234 AA. AC A0A078FVD8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC09g40630D protein {ECO:0000313|EMBL:CDY16936.1}; GN Name=BnaC09g40630D {ECO:0000313|EMBL:CDY16936.1}; GN ORFNames=GSBRNA2T00094858001 {ECO:0000313|EMBL:CDY16936.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16936.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16936.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032068; CDY16936.1; -; Genomic_DNA. DR EnsemblPlants; CDY16936; CDY16936; GSBRNA2T00094858001. DR Gramene; CDY16936; CDY16936; GSBRNA2T00094858001. DR OMA; NDHKNKA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 234 AA; 27152 MW; 980C32FA1C1B712B CRC64; MEGRNDHKNT AKLRSEASEM TWKVKIEDGR RLTEGWKEFA LAHDLRVGDI VVFRQEKDMS FHVTLFGPSC CEIQYGSGID QDNNLEKIQE KKNPKREEAE SSCFVANVRL ESDEESNHIS SQERIDREDK KGLTSQSRFV TLTIRYWDVK NSRLYLPMAF TKDSGINVKT KLALLDKNDV KWPTDLRSEY NGKRIRMIGG WKKFFKANFL KIGESIKFKL IWDGNTSCVL KLCS // ID A0A078FVP7_BRANA Unreviewed; 602 AA. AC A0A078FVP7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA05g09790D {ECO:0000313|EMBL:CDY17209.1}; GN ORFNames=GSBRNA2T00095276001 {ECO:0000313|EMBL:CDY17209.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY17209.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY17209.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032071; CDY17209.1; -; Genomic_DNA. DR EnsemblPlants; CDY17209; CDY17209; GSBRNA2T00095276001. DR Gramene; CDY17209; CDY17209; GSBRNA2T00095276001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 602 AA; 66006 MW; D99CDAD216EC8B66 CRC64; MGGLIDLNVT EEQEEETTPS SGSGSLSPCD SSSSASAFGV SGSSSSSGVC LELWHACAGP LISLPKRGSL VLYFPQGHLE QAPDFSAAIY GLPPHVFCRI LDVKLHAETA TDEVYAQVSL LPESEDIERK VREGVIDVDG GEEDYEVVKR TNTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYTQ PRPSQELLAR DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGDDGK LRLGVRRASQ IEGASAFSSQ YNQNMNHNNF AEVAHAISTN SAFNIYYNPK ASWSNFIIPA PKFLKTVDYP FCIGMRFKAR VESEDASERR SPGIITGIND LDPIRWPGSK WRCLLVRWDD TDANGHHQQR ISPWEIEPSG SISSSGSFIT TGPKRSRIGF SSGKPDIPVS GSGATDFEES LRFQRVLQGQ EIFHGFINTS TDGGAGARRG RFKGTEFGDS YGFHKVLQGQ ETVPAYPMMT DQRHQGMSQR NIWCGPFQNF STRILPPSSV HVSSPLPSSG PNVRMEEHHG GSGRCRLFGF PLRDETTAVG SGMVVGPCVE GQNGSSIRGA SAVHTQGRDI YGMRDMLLDI AL // ID A0A078FVZ9_BRANA Unreviewed; 373 AA. AC A0A078FVZ9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC09g40640D protein {ECO:0000313|EMBL:CDY16937.1}; GN Name=BnaC09g40640D {ECO:0000313|EMBL:CDY16937.1}; GN ORFNames=GSBRNA2T00094859001 {ECO:0000313|EMBL:CDY16937.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16937.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16937.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032068; CDY16937.1; -; Genomic_DNA. DR EnsemblPlants; CDY16937; CDY16937; GSBRNA2T00094859001. DR Gramene; CDY16937; CDY16937; GSBRNA2T00094859001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 42652 MW; F687B1C464ABC3BB CRC64; MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL TEGWKEFALA HDLRVGDIVV FRQENDMAFH VTLFGPSCCE IQYGSCLDDK NKLVKIQSKK KVKKNTKREV ETCTLDPSCY VVNVTPSSLR YDMLYIPKSF ARANGLETRS GEIVLMNEKG TSWTLILKRK NSCGTMYITR GWRRFCRVNG LRAGSFFTFK LIQRGGTLVL RKSPSSTESE DSSEGDEIEP LSTESKSFKK TSSMWKASSS PFQNLFVTLT LKPYEVEKST LYLPVQFTRR HSINEETRMT LLDKNGVKWS TDLRSEKRSD KIRLVGGCKE FFKANCVEMG ESIIVKLIWD GDTSCVLKFC SKV // ID A0A078FWI1_BRANA Unreviewed; 877 AA. AC A0A078FWI1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA09g05840D {ECO:0000313|EMBL:CDY16798.1}; GN ORFNames=GSBRNA2T00094679001 {ECO:0000313|EMBL:CDY16798.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY16798.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY16798.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032067; CDY16798.1; -; Genomic_DNA. DR EnsemblPlants; CDY16798; CDY16798; GSBRNA2T00094679001. DR Gramene; CDY16798; CDY16798; GSBRNA2T00094679001. DR OMA; ASSAENC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 199 301 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 751 833 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 199 301 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 877 AA; 97548 MW; 4C82422417E35961 CRC64; MVTTGNSRCI ASLLAGVQAS VTPDKRAEED EDDTRSCRIS KSRFDSRVSS SLLALLDETD LRCMTSSEAL NVAVSGEGQK GHSSRVVDAE AALYRELWHA CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEV DSDEVYAQIT LLPEAIQDEN VIEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHANEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVSSS VISSHSMHLG VLATAWHAIS TGTMFSVYYK PRTSPSEFIV PFDQYMESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK SKWRSLKVRW DETSSIPRPD RVSPWKLEPA LAPPALSPVP MPRPKRPRSN IAPSSPDSSM LIREGSAMGN KDPLPASGLS RVLQGQEHPT LRTKHTETVE CDAPESSVVW QSSADDDKVD VVSASASASR RYENWMSSGR HDSAYTDLLS GFGANVDPSP GQQIPFYDHS SQPSVAANKF IGDRDGKFDY FANQWQMMHS GLSLTLHESP KIPAASDTSF QNAGGNWPIR PRAVNYFEEA VQAHAQAQAR EHVTKRPKMV EETAKSRDGN CRLFGIPLVN NVNGTDSTMS PRNNFNDTAG LTQMTSPKVQ DLSEQSKGSK STNDQREQGR PFQANHHPHP KDVHTKTHSS RSCTKVQKQG IALGRSVDLS KFQNYEELIA ELDRMFEFNG ELMAPKKDWL IVYTDDENDM MLVGDDPWQE FCGMVRKISI YTKEEVRKMN PGTLSCRSEE EAVVGEGSDP KDAKSASNPS LSSAGHS // ID A0A078FZL9_BRANA Unreviewed; 283 AA. AC A0A078FZL9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA01g27140D protein {ECO:0000313|EMBL:CDY18481.1}; GN Name=BnaA01g27140D {ECO:0000313|EMBL:CDY18481.1}; GN ORFNames=GSBRNA2T00005485001 {ECO:0000313|EMBL:CDY18481.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY18481.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY18481.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032086; CDY18481.1; -; Genomic_DNA. DR EnsemblPlants; CDY18481; CDY18481; GSBRNA2T00005485001. DR Gramene; CDY18481; CDY18481; GSBRNA2T00005485001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32556 MW; 235641A1067C6AAE CRC64; MQFILTNPNL QNRSSFQETM LPESENRENL SSPSFIKSLS LGQNWKSKSM RIFPEEFVRS AGEAFVHRVV LSVLWNNSWQ CWLQQDKNGL FMVEEDWDEF VDDNLLDTDD ILLFTHQDTI YFQVRIFKKD GSEITSVPLE GEPETQPFHQ ETTPAFASAN GGTSSRARKG YAHVENPKRY LLNPRNPYFE KTLTKTNTVL YVNTWVIEEY DLEFSPPNTH MHFLLPDGET LDGYTKDYGG SHSFLGWAAV CERCNLRTGD TVVCELELSG RVVVAVRVHL LDE // ID A0A078G034_BRANA Unreviewed; 301 AA. AC A0A078G034; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA09g07640D protein {ECO:0000313|EMBL:CDY18631.1}; GN Name=BnaA09g07640D {ECO:0000313|EMBL:CDY18631.1}; GN ORFNames=GSBRNA2T00005693001 {ECO:0000313|EMBL:CDY18631.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY18631.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY18631.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032087; CDY18631.1; -; Genomic_DNA. DR EnsemblPlants; CDY18631; CDY18631; GSBRNA2T00005693001. DR Gramene; CDY18631; CDY18631; GSBRNA2T00005693001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 301 AA; 34726 MW; 048281419A679500 CRC64; MVERSEKGKD MEFFKVCLPE FSSRKLVIPP AFVNILEKPL PNQVVLLDEI GRLWNVETKT EEGVGDVVFK KGWEKFANDH SLEFGDFLVF SYDAVSRFSV KIFDKNGCKK YLVAVTTADR SRVAVEKEPV LVKPVDDIST KRCGKSRKRV PVKEEPSGNR VKDPCEMGCV PENKKHKGFE EPNYKPKNPH FVRNITLCFR QMEIPTSFLK WNGIEMEEDF ELCDENGKKW PMKVVIHDRG QRFSPGLWLS FCRSHKLSTS NKCLFEFIVR SDGTCNQVLV RIFRGRMLTT VTINGYQVLV M // ID A0A078G0N6_BRANA Unreviewed; 342 AA. AC A0A078G0N6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA01g26330D protein {ECO:0000313|EMBL:CDY18562.1}; GN Name=BnaA01g26330D {ECO:0000313|EMBL:CDY18562.1}; GN ORFNames=GSBRNA2T00005597001 {ECO:0000313|EMBL:CDY18562.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY18562.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY18562.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032086; CDY18562.1; -; Genomic_DNA. DR EnsemblPlants; CDY18562; CDY18562; GSBRNA2T00005597001. DR Gramene; CDY18562; CDY18562; GSBRNA2T00005597001. DR OMA; TTGHANK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 39558 MW; E0BDB8744E8F7384 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSTGL MDSAHNHFKR ARLFEDLEDE DVEVVHPSSL YPLQHPETTG HANKGHTSSA IQSFFAEPVK AEETTPTPKV PKKRGRKKKN ADPEEINSSA PRDDDPENRS KFYESASARK RTVTAEERER AINAAKTFEP TNPFFRVVLR PSYLYRGCIM YLPSGFAEKY LSGISGFIKV QLGEKQWPVR CLYKAGRAKF SQGWYEFTLE NNLGEGDVCV FELLRTRDFV LKVTAFRVNE YV // ID A0A078G1A5_BRANA Unreviewed; 314 AA. AC A0A078G1A5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC04g36210D protein {ECO:0000313|EMBL:CDY20335.1}; DE Flags: Fragment; GN Name=BnaC04g36210D {ECO:0000313|EMBL:CDY20335.1}; GN ORFNames=GSBRNA2T00012280001 {ECO:0000313|EMBL:CDY20335.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20335.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20335.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032105; CDY20335.1; -; Genomic_DNA. DR EnsemblPlants; CDY20335; CDY20335; GSBRNA2T00012280001. DR Gramene; CDY20335; CDY20335; GSBRNA2T00012280001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:CDY20335.1}. SQ SEQUENCE 314 AA; 35334 MW; B0D8D5DDD8A7D26B CRC64; LISSFTGNIP EKKKVKKNPR KETESASLDP SCFVAYVSPA TLRHDKLNLP RSFVRVNGLE TRCGEIHLMN EKGRSWTLAL KQELCGSTYI RRGWRSFCSS NGLKTGGLYN FKLIKRGRTS VLRLSSTGSD LEEESSEGDE VESLSTGPES DEGTKTNLEK KKNPKNDAES SSLYHSCYVA NVTPSSLQDD RLDLRKSFVR ANALETRCGE IVLTNEKGRP SNLTSYKLVL PLHFTKRHGI NEKTKMTLLD KNGVKWFTNL RSEKTSDRVR LVGGWKEFFE ANCVEIGESI VLKLIWEGDK SCALKFCSKV KHET // ID A0A078G231_BRANA Unreviewed; 383 AA. AC A0A078G231; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC07g12370D protein {ECO:0000313|EMBL:CDY20570.1}; GN Name=BnaC07g12370D {ECO:0000313|EMBL:CDY20570.1}; GN ORFNames=GSBRNA2T00012726001 {ECO:0000313|EMBL:CDY20570.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20570.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20570.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032109; CDY20570.1; -; Genomic_DNA. DR RefSeq; XP_013721771.1; XM_013866317.1. DR EnsemblPlants; CDY20570; CDY20570; GSBRNA2T00012726001. DR GeneID; 106425594; -. DR Gramene; CDY20570; CDY20570; GSBRNA2T00012726001. DR KEGG; bna:106425594; -. DR OMA; HEGELEF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 383 AA; 42824 MW; 736D1CFACE536398 CRC64; MEDLSLHSPV KPHFFQPLLP GFHTHLTIPV AFFLKHVQGR NDQIKIAKLT TDASDNTWTV RMDGLKLTHG WEDFALAHDL RVGDMIVFRH EGELEFHVTA LGPSCCEIQY TSSHNINHNQ TNNIDACSLS DHSRFVAKVS SSNLRLDRLY LPMSFARTNG LDKMSGEEII LLNEEGRSWS LKLKHDKSDM HTFIRPGWRR FCAENGMSHG HYTLKLVRNS GPPVIKLCGQ VHNRPKQVPV VSSLHHSCSV GSVTSNSLKT DKLYLGKKFV SENGLDRGCS EVVLKNEWGG RWSLALRCYE SAKQTYLGPG WRTFCQVNGI KVGDSFKFKL VGTGDNPVLL LCTRKTPLEC PEESSGSDTS SGDDSSKSQE SEEESLGDKN ISQ // ID A0A078G4M0_BRANA Unreviewed; 509 AA. AC A0A078G4M0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC04g36220D protein {ECO:0000313|EMBL:CDY20334.1}; GN Name=BnaC04g36220D {ECO:0000313|EMBL:CDY20334.1}; GN ORFNames=GSBRNA2T00012279001 {ECO:0000313|EMBL:CDY20334.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20334.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20334.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032105; CDY20334.1; -; Genomic_DNA. DR RefSeq; XP_013743891.1; XM_013888437.1. DR EnsemblPlants; CDY20334; CDY20334; GSBRNA2T00012279001. DR GeneID; 106446655; -. DR Gramene; CDY20334; CDY20334; GSBRNA2T00012279001. DR KEGG; bna:106446655; -. DR OMA; CFLANIW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 256 353 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 406 504 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 256 353 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 406 504 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 509 AA; 58169 MW; 5AADAE97B5686345 CRC64; MVNKRFFKPL LPGFHSHLTI PVAFFVKYIE GKNEHHTTKL RSDASKITWE VKIEDGQKLT DGWKEFALAH DLRIGDILIF KQEKDMAFHV TLLGPSGCEI QYESCSEEEN NFGNIPKKKN SKREAESSSL DPSCFLANIW PSSLRYDSLN LPRSFVRANG LETRCGREIV LINEKGKSWT LALKQKLSGP TYIRRGWRSF CIANGLKTGG VYTFKLIKRG RAPVLRLSST ESELEERNIE KIQRNKAESS SLNPSCFVAN ISRATLRYDT LGLPMKFSRE NGLEARCGEI VLMNEKGRSW KLNLKRKRSC GTMYITQGWR SFCSANGLRA GSSSTFKLIK RGGTLALRLS SKETEEEEED CSLKANEVES LSTEPESDEE GSQDEKQIKK HRSTWKASSS QSQNRFVTLT FRPFNLEKYL LFLPLRFTRW HGINEETKMR LLDKNGVKWS TDLRSGKTNI DKIRLVGGWQ EFFKANCVKP GESIIVKLIW DGDKSCILKF CSKVKHETE // ID A0A078G5G1_BRANA Unreviewed; 375 AA. AC A0A078G5G1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC07g12360D protein {ECO:0000313|EMBL:CDY20569.1}; GN Name=BnaC07g12360D {ECO:0000313|EMBL:CDY20569.1}; GN ORFNames=GSBRNA2T00012725001 {ECO:0000313|EMBL:CDY20569.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20569.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20569.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032109; CDY20569.1; -; Genomic_DNA. DR EnsemblPlants; CDY20569; CDY20569; GSBRNA2T00012725001. DR Gramene; CDY20569; CDY20569; GSBRNA2T00012725001. DR OMA; VFLQNGC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 156 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 309 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 156 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 309 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 42137 MW; 38436BE7B00AD9C2 CRC64; MVDEFLYSPI KPHFFQPLLP GFHTHLNIPV AFFSKHVVGR HDHVKIAKLR TYASDKNWKV KMDGSKLTDG WEDFAVAHDL RVGDMIVFRH EGEMVFHVTA LGPSCCEIQY TSTHNINDDS HDETNNIVTG NSSREKRKRV KKNPKPVPQA SLHSSCYVGS VSNSSLKHNK LYLGKEFVAA NGLNKGCSEI VLKNERGGRW TLPLKHYKSI NHTYLGPGWT PFCQVNGIKA EDSFMFKLVR TGDKPVLCLC PEESSHRDKT PLECLEDSDD VNPLSSSTCS GDKSSKSKES KEESLGDKRA SSSYSEDRFL TLTLTQKAVK RYQLFLPMGF AKRNGINKPG KITLLGQDGV KQEVALMQNK RTGQNANWKR LESVP // ID A0A078G5U8_BRANA Unreviewed; 234 AA. AC A0A078G5U8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC04g36240D protein {ECO:0000313|EMBL:CDY20332.1}; GN Name=BnaC04g36240D {ECO:0000313|EMBL:CDY20332.1}; GN ORFNames=GSBRNA2T00012276001 {ECO:0000313|EMBL:CDY20332.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20332.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20332.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032105; CDY20332.1; -; Genomic_DNA. DR EnsemblPlants; CDY20332; CDY20332; GSBRNA2T00012276001. DR Gramene; CDY20332; CDY20332; GSBRNA2T00012276001. DR OMA; SEMEVHI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 234 AA; 27196 MW; 2BCE5F9D87DF67C7 CRC64; MEGRNEHKNM AKLRSEASEM TWKVKIEDGR RLTEGWKEFA LAHDLRVGDI VVFRQEKDMS FHVTLFGPSC CEIQYGSGID QDNNLEKIQE KKNPKREEAE SSCFVANVRL ESDEESNHIS SQERIDREDK KGLTSQSRFV TLTIRYWDVK NSRLYLPMAF TKDSGINVKT KLALLDKNDV KWPTDLRSEY NGKRLRMIGG WKKFFKANFL KIGESIKFKL IWDGNTSCVL KLCS // ID A0A078G678_BRANA Unreviewed; 287 AA. AC A0A078G678; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA08g25640D protein {ECO:0000313|EMBL:CDY20961.1}; GN Name=BnaA08g25640D {ECO:0000313|EMBL:CDY20961.1}; GN ORFNames=GSBRNA2T00015108001 {ECO:0000313|EMBL:CDY20961.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20961.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20961.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032115; CDY20961.1; -; Genomic_DNA. DR EnsemblPlants; CDY20961; CDY20961; GSBRNA2T00015108001. DR Gramene; CDY20961; CDY20961; GSBRNA2T00015108001. DR OMA; HISKECE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 186 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 186 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 33114 MW; 60D4668EE6385EAA CRC64; MMFPKEREIG SSSGLGQGEV NVEKLSFFKI FQGEDLSSES MRAFPYDFIR NVPQNDYSSN MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTR LMCFNVNIYE ENGKELVRPR TMASLSGIKK EVGESSKKDV KKAEETGGVR VKSKRFEEGK TSKKKMKKSN NDEDTVPVFN ITITTSYLKF LPIPRYFADV HIPNKSKMVV TIHHSNGNCS WEVVCLVRRA RANFSSGWAR LVREYPLSVG DFCTFKFIKP TEFHLVVSKK VEEIMSD // ID A0A078G6R2_BRANA Unreviewed; 379 AA. AC A0A078G6R2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC04g36230D protein {ECO:0000313|EMBL:CDY20333.1}; GN Name=BnaC04g36230D {ECO:0000313|EMBL:CDY20333.1}; GN ORFNames=GSBRNA2T00012277001 {ECO:0000313|EMBL:CDY20333.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20333.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20333.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032105; CDY20333.1; -; Genomic_DNA. DR EnsemblPlants; CDY20333; CDY20333; GSBRNA2T00012277001. DR Gramene; CDY20333; CDY20333; GSBRNA2T00012277001. DR OMA; TSSIWKA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 277 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 277 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 379 AA; 43302 MW; BCFDA7984CE3543B CRC64; MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL TEGWKEFALA HDLRVGDIVV FRQENDMAFH VTLFGPSCCE IQYGSCLDDK NKLVTIQSSK KKMKNTKREA ESSTLEPSCY VANVTPSSLR YDMLNIPKSF ARANGIESRS GEIIVLMNEK GTSWTLILKR KNSCGTMYIT RGWRRFCRAN GLKAGCFFTF KLIQRGGTLF LHKSPSSTES EDSSEGDEIE PLSTESKSFK KTSSIWKASS SSFQNLFVTL TLKPYEVEKS TLYLPVQFTR RHSINEETKM TLLDKYGVKW STDLRSEKRS DKIRLVGGWK EFFKANCVEM GESIIVKLIW DGDTSCVLKF CSKVKQETR // ID A0A078G762_BRANA Unreviewed; 225 AA. AC A0A078G762; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC02g28670D protein {ECO:0000313|EMBL:CDY21256.1}; GN Name=BnaC02g28670D {ECO:0000313|EMBL:CDY21256.1}; GN ORFNames=GSBRNA2T00015570001 {ECO:0000313|EMBL:CDY21256.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY21256.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY21256.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032118; CDY21256.1; -; Genomic_DNA. DR EnsemblPlants; CDY21256; CDY21256; GSBRNA2T00015570001. DR Gramene; CDY21256; CDY21256; GSBRNA2T00015570001. DR OMA; MPAPVYK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 25437 MW; DCC14BEF8EEAF567 CRC64; MVVAKQSPYE EFRLRRLEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV RRSSRISNAS SSSPVYKEAS CCSTSASTQK GRDLSNRVYV SEEIREEAFS KAEKLQADLR NRFPSFVKSM LQSHVSGGFW LGLPVHFCRS ELQKQDGVIT LIDEEGEEFE TVYLAKRTGL SGGWLGFAVS HNLVYGDALV FELVRPTVFK VYITRVKSSG ESLKM // ID A0A078G7N4_BRANA Unreviewed; 255 AA. AC A0A078G7N4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC08g14450D protein {ECO:0000313|EMBL:CDY20613.1}; GN Name=BnaC08g14450D {ECO:0000313|EMBL:CDY20613.1}; GN ORFNames=GSBRNA2T00012788001 {ECO:0000313|EMBL:CDY20613.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY20613.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY20613.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032110; CDY20613.1; -; Genomic_DNA. DR EnsemblPlants; CDY20613; CDY20613; GSBRNA2T00012788001. DR Gramene; CDY20613; CDY20613; GSBRNA2T00012788001. DR OMA; MKSNNDE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 255 AA; 29415 MW; 7DD2293E3B222E02 CRC64; MMFPKEREIG SSSGLGQGEV DVKNLSFFKI FQGDDLSSES MRAFPYDFIR NVPQNDYSSN MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTG LMCFNVMIYE ENGKELVTPR RPRTMASLKS SNKDVKKKAE ETGGVRVKSK RFEEGETSKK KKKKMKSNND EDSIQHHYKD IIPQVPANPN VVCLVRKARA TFSSGWARLV REYPLSVGDF CTFKFIKPTE FHLAVSKKVE EIMSD // ID A0A078G7V6_BRANA Unreviewed; 1897 AA. AC A0A078G7V6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=BnaC03g27030D protein {ECO:0000313|EMBL:CDY21494.1}; GN Name=BnaC03g27030D {ECO:0000313|EMBL:CDY21494.1}; GN ORFNames=GSBRNA2T00015923001 {ECO:0000313|EMBL:CDY21494.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY21494.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY21494.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032121; CDY21494.1; -; Genomic_DNA. DR EnsemblPlants; CDY21494; CDY21494; GSBRNA2T00015923001. DR Gramene; CDY21494; CDY21494; GSBRNA2T00015923001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 11. DR Gene3D; 2.40.330.10; -; 11. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 11. DR SUPFAM; SSF101936; SSF101936; 11. DR PROSITE; PS50863; B3; 11. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 278 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 575 670 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 734 827 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 828 923 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 994 1069 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1181 1274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1358 1454 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1518 1611 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1673 1768 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1800 1896 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 278 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 575 670 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 734 827 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 828 923 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 994 1069 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1181 1274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1358 1454 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1518 1611 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1673 1768 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1800 1896 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 1466 1497 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1897 AA; 213924 MW; 4DA9C81249103B6A CRC64; MMFQVSDVGH RDVETPSSNN GQDSIGSMNK KHPYARPEAG FSSNHGDNQD NDELPRKRNY PETEKGSSSR HSCIVADVTT ASSLHTYTPV FLTQDFTSLG GLKGKGSPKR IISSMGTRFV TFTLAPVDVR HCRLRLPMQF SRENGINKPG KIYLLGNDGS KWLANLLQES RGRMTVGDGW KSFVKANGLK IGESYTLELN WEDTTPVLSL CPTDHHSVGI RADGECSEAS ENESLPIKPS SGTEVIKYDN RKDESSSWER EKNHLRSRDS SSASQNRFLT LTITPDSLRH GRLRLPLEFM TENSMNRPGD ITLLGKDGAK WLASLLLERR GRMCLGKGWK DFAKANGLKT GDSITLESIW EDSTPVLRLL HIESTDDRRQ QDECSKAREK ESAFTEPSSG NKTRKLESNR EESRIYPLTR LDSSLVNQNR FETSTVRYGA HDYQIGEIVV FRDERDMMFQ VSDLGPRFSE IQNVLAPSSN SDQENIGSIS IIRKETGFSL YDGDDQYNIE LPRKKKAKKN NPGTEADSSP ERSCFVAHVT ASNLHTDAPH LPQDFTSSNS PTQIVSSYLS SEKQLATFTL APVDVRNCRL RLPMQFTREN GINKPGKIYL LGKDGSKWLA NLLLESRGRM TLGDGWKSFV KANGLKTGES FTLKLNWEDA TPVLSLCPPE CSIDSREGGE CSETIEKEPL PIVLSCEKEI SKDDENRKKE SSSWERETNL LIWRDSTVLS QNRCLTLTIT PDSLKHGRLR LPLEFMTDNS MNKPGEITLL GKDGVKWLVS LLLEKRGRMS LGKGSGNKTR KAENRREGSS SWELEKRRYS SSAFQNRIVI LTLTPEGVRD CKLQLPSQFM RTNGIMNPGK ITLLGRSGMK WFAYLLSKDG TIALENGWKG FCEANGVMVG ESFVLELIPT EDADHVFKFY SNYGYHIHKC SFLAMSFNLL YLMSHMRFTK FLIEANAETA DTQGHATDFV ARFFSHAGLM SFISISRRSV PSTIPSDFFS NYIKDLETTT AELKSDSSLD ITWKVKLTGR ILNDGWGDFA VANSLQIGNV VLVRYEGGTV FHVSDLGPSF SQIRDIKPPK QNIDDDDEVP LNKKVKTNIY ETEADSCLKA FLTDSSLHTD TLHFTSSNAL SRNCSEAHSA QLSNEDMERE REEDESLIKK KLKPKQRPVS YSSYSPCHKR FVTFTLPPEY STLCRLTLPN LFVKENGIST PAEICVLGKD GTKWPITLLL DKKGIMSFGK GWKEFVKANG LETGFTLKLM WEDTTPSFSL CCPESASDKD EEECLESIKK QSLSIDRRIR DKPGKRKNNK EEKKSWEREK IHLRGRDVGD FEEVPINKKV KTDSHGTDAA SSSLDNSCFV AFVTDSSLDT DTLYLPRYFT SSNGLTRKCL KIVLIDGGGR SWAMDLSFNE SSDIFYISPG WRSFCDKNGL EAGGFFTFKL VGNEETPVLS FCPMVSIDSR SQKDCFEAHS TEVSNEEEEI ERERNEEETL MDIEEKKKSK PEQRPVSYSS YSPCYKRFIT FTLPPDYATL DKLTLPKLFV KENGINKPGE IYLLGKDGTK WLTRLLLDKK GLMRLGKGWK DFVKANGVES GFTLKLIWED ATPSFSLCCA ESTSDKDEEE YLETIKKQSL SIDRRIRDKI SKVENDKEEK RSWEREKIDM RGRDSTTSSQ KQFLTLAITP TSLRCNRMRL PIPFLRKSCM DKPGVIYLLG KDDTKWMANL IQEGDGRMKL GKGWTAFAKE NEFKAGESVT LESIWEDETP MIRFLRTESE SSKANKKESI YTEDTESRTR DSSTEIHARF VTLTLKHEDV KACMLILPSQ FLKANGINKL GKITLLDENE VELSAYLLSR EGIVAVESGW GEFCEANGVK LGESFTLECI KEQDETAPVL KVMFSGG // ID A0A078GBD4_BRANA Unreviewed; 545 AA. AC A0A078GBD4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC09g00990D {ECO:0000313|EMBL:CDY21993.1}; GN ORFNames=GSBRNA2T00018334001 {ECO:0000313|EMBL:CDY21993.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY21993.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY21993.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032126; CDY21993.1; -; Genomic_DNA. DR EnsemblPlants; CDY21993; CDY21993; GSBRNA2T00018334001. DR Gramene; CDY21993; CDY21993; GSBRNA2T00018334001. DR OMA; CPPEVEI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 466 545 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 62376 MW; 953A722959204195 CRC64; MANNQIMNAQ PKFRGTEGVN RYLYDQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQLVASA NDNLCQLKPI FDISSRIHCN VVSIKLRVET NTDEVYAKVS LLPCPPEVEI PFPNDNNEQN IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIAAKDLH DHVWKFKHTF RGTPKRHLFT SGWKEFVKGK NLTVGDSFVF LRGENGESRV GIRKASHQQS DMSSSVISKE SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNRKLNTSS RFTMKFEGHD FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSPWEIE PLIPSSNILK SVIRNNKRQR EINEFVSYAG PIISKPDYND QMVQSTKENS TTNASSSFRL FGVDLTASTK ARDVLEPLES YQKNKTSEIF EEENLDQIQA VTSLTEIQRK EISFTTSSTK VHMEGVVRTV DLTVFNGYNH MIVELEKLFN IEGKLHMHSQ WKLTFKDHEG DMMLVGDDPW PKFCNIVKEI VISSK // ID A0A078GBP3_BRANA Unreviewed; 348 AA. AC A0A078GBP3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA06g02760D protein {ECO:0000313|EMBL:CDY22801.1}; GN Name=BnaA06g02760D {ECO:0000313|EMBL:CDY22801.1}; GN ORFNames=GSBRNA2T00021143001 {ECO:0000313|EMBL:CDY22801.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY22801.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY22801.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032136; CDY22801.1; -; Genomic_DNA. DR EnsemblPlants; CDY22801; CDY22801; GSBRNA2T00021143001. DR Gramene; CDY22801; CDY22801; GSBRNA2T00021143001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 313 331 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 52 109 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 173 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 109 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 173 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 40765 MW; 2BD16885642D3A07 CRC64; MFLVSSAIPM DVAKSETLNT TTDSYLPVKK RMRLNEPPTT DKAPVSASDK TKYKGVVQHQ NGHWGAQIYV DHKRIWLGTF KSAAEAAMSY DSASIKLRAF DANSQRNFPW SDLTVHEPVF QKGYTTEAVL NMIKDGSYQR EFKEFLKNRS QIVSKQNRRD EESNKCFSCT QLFQKELTAS DVGKLNRLVI PKKYAVKYLP FISEREEGEI VEDVEVLFYD REMRPWKFRY CYWTSSQSFV LTRGWIGFVK EKRLKEKDLV TFYTCDVPTL EGQSKKFLMI DVHYFSDNNS AVTDEEVNKT VHNNSSDDVM KPVYIYIYIY IYIYIYIYIS VSKIIDSKNW KENKIMRK // ID A0A078GBS0_BRANA Unreviewed; 338 AA. AC A0A078GBS0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA06g02510D protein {ECO:0000313|EMBL:CDY22826.1}; GN Name=BnaA06g02510D {ECO:0000313|EMBL:CDY22826.1}; GN ORFNames=GSBRNA2T00021173001 {ECO:0000313|EMBL:CDY22826.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY22826.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY22826.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032136; CDY22826.1; -; Genomic_DNA. DR EnsemblPlants; CDY22826; CDY22826; GSBRNA2T00021173001. DR Gramene; CDY22826; CDY22826; GSBRNA2T00021173001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 101 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 176 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 101 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 176 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38580 MW; A379E7572B1B473E CRC64; MNSLNEAKTM TETSGSSNSV LCLANPMEQP HVSTTTRSVL SNTKYKGVVQ QPNGHWGAQI YSEHRRIWLG TFKSAAEAAA SYDSASIKLR GIDANSYRNF PWCEITTHEP AFQANYTTEA VLNMIKDCSY QHKFMEYLRR RSQLVDFANI NIVAAASKQS RGGRGVQEPF SCTPLFSKEL TPSDVGKLNR LVIPKKHAVK HLPFISDGQK EREEGEIGEA VDDVEVVFYD RAMRQWKFRY CYWRSSQSFV FTRGWNGFVR EKRLKEKDVI VFYHCDVPTN VMTLQGQNNS FLMIDVDYFT DKGPVAPKEV DKMVHNTSEE EMKTETKGGF MLFGVRIQ // ID A0A078GBT9_BRANA Unreviewed; 365 AA. AC A0A078GBT9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC03g17610D protein {ECO:0000313|EMBL:CDY23930.1}; GN Name=BnaC03g17610D {ECO:0000313|EMBL:CDY23930.1}; GN ORFNames=GSBRNA2T00024431001 {ECO:0000313|EMBL:CDY23930.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY23930.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY23930.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032152; CDY23930.1; -; Genomic_DNA. DR EnsemblPlants; CDY23930; CDY23930; GSBRNA2T00024431001. DR Gramene; CDY23930; CDY23930; GSBRNA2T00024431001. DR OMA; RRCKMIL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 84 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 124 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 365 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 84 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 124 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 41300 MW; D372FD4E9B018B87 CRC64; MLLQTIPVAF FSKHIQGRND QKTTTELRSD AASEKTWEVK TEDGRRLTDG WKEFALAHDL RVGDILIFRQ EKDMTFHVTL FGPSCCEIQY DSCLDDKNSI GKINSKKNNP KREAECSSSS DPSCFLANVM PSTLRYDSLN LPRSFVRANG LETRCGDIVL INGKGRSWTL SLKQRQCGRS YITRGWRSFF SANGLKAGDS FTFKLIKRGG TLVLLHKSPS HRESKENEGS EADDEIESLS TESDSDEESN QDEKKRISIW NASSSPSLNR FVTLTLKPYN VIKRVLFLPK PFTDLHGITV GTKMSLVDKQ GVKWCTKLRS ESKRIRMAGG WKDFFKANCV KTGESIKLKL IWEEDTSCVL SSKPR // ID A0A078GBU4_BRANA Unreviewed; 337 AA. AC A0A078GBU4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA06g02630D protein {ECO:0000313|EMBL:CDY22814.1}; GN Name=BnaA06g02630D {ECO:0000313|EMBL:CDY22814.1}; GN ORFNames=GSBRNA2T00021160001 {ECO:0000313|EMBL:CDY22814.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY22814.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY22814.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032136; CDY22814.1; -; Genomic_DNA. DR EnsemblPlants; CDY22814; CDY22814; GSBRNA2T00021160001. DR Gramene; CDY22814; CDY22814; GSBRNA2T00021160001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 175 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 175 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38597 MW; B523F4688F02727E CRC64; MDIAKSKASN TSDSYLPPKK RMRLSEPPTD KAPVSTAIKR VSFSDGTKYK GVVPQPNGRW GAQIYVDHKR IWLGTFSSAA EAAMAFDSAN IKLRSFDTNS ERNFPWSDLT VQEPVFQNGY TTEAVLNMIK DGSYQREFID FLKTRSQVVI GGRYNMVGPK EDQESKKGFS CTELFRKELT PSDVGKLNRL VIPKKYAVRY LPLLRDDQKE REEGEIVEDV EVVFYDRAMR PWKFRYCYWR SSQSFVFTRG WNGFVKEKSL KEKDAIVFYT CDVPTLEGQR KKFLMIDVHC SSDEGYAVCD EEVNETVHNS SEGGVKTEET KSVENKGGFM LFGVRIQ // ID A0A078GCA6_BRANA Unreviewed; 327 AA. AC A0A078GCA6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC03g40730D protein {ECO:0000313|EMBL:CDY22996.1}; GN Name=BnaC03g40730D {ECO:0000313|EMBL:CDY22996.1}; GN ORFNames=GSBRNA2T00021429001 {ECO:0000313|EMBL:CDY22996.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY22996.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY22996.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032138; CDY22996.1; -; Genomic_DNA. DR RefSeq; XP_013676581.1; XM_013821127.1. DR EnsemblPlants; CDY22996; CDY22996; GSBRNA2T00021429001. DR GeneID; 106381237; -. DR Gramene; CDY22996; CDY22996; GSBRNA2T00021429001. DR KEGG; bna:106381237; -. DR OMA; PHSEINY; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37994 MW; 9083A3EA20C49218 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVRRF KDELSVAVAL TVPDGHVWRV GLRKADNNNK IWFQDGWQEF VHRYSIRIGY LLVFRYEGNS AFSVYIYNLP HSEINYHSTG LMDSANHFKR PRLFEDLEDE DAETLHTTTS AIQSFFTGPV KPEEATPTQT SKVPKKRGRK KKKNADHPEE VNSSAPRDDD PESRSKFYES ASARKRTVNA EERERAINAA KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA GRAKFSQGWY EFTVENNLGE GDVCAFELLR TRDFVLKVTA FRVNEYV // ID A0A078GD43_BRANA Unreviewed; 807 AA. AC A0A078GD43; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA08g12400D protein {ECO:0000313|EMBL:CDY23306.1}; GN Name=BnaA08g12400D {ECO:0000313|EMBL:CDY23306.1}; GN ORFNames=GSBRNA2T00021880001 {ECO:0000313|EMBL:CDY23306.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY23306.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY23306.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032142; CDY23306.1; -; Genomic_DNA. DR EnsemblPlants; CDY23306; CDY23306; GSBRNA2T00021880001. DR Gramene; CDY23306; CDY23306; GSBRNA2T00021880001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 474 568 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 674 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 707 803 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 474 568 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 578 674 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 707 803 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 807 AA; 91921 MW; 6DA8A1B0CBEC9BA8 CRC64; MVNPPLQSPT NPHFFQPLLP GFDTHLTIPV AFFSKHIQGK TMKKTVKLRS YTSDRTWEVK IDGRRLTRGW KDFAKAHDLR IGDIIIFKHE GDMTFSVTPF GPSCCEIQYT QSHIIKKEAD TDDDDEDDNE RQYKIRNGLK PKTEPISSYS FDYCFVSEVT ASNLKLDTLY LPVGARSSSA LNKRCHEMIL VNKEGNSWTA SLKFRESGGM YYIRRGWRRF CLDNRRKVGD LFVFNLVGDG KTTPMMCVCP EEECSELVSK HLSRGRRSRK TKKRSKWVAS SSSRRNRFLT ITLTRYNFIS SKLILPIAFT NINGLNKYKE IILMDKHGVK RLTKLVQDGP HNNRRGLGKG WKLFCEANDV FKIGESFVLE LVWEDTVPVL KFCSKNVPVA FFSKHVQGRN GDKTARLRSD ASDTTWEVGE LVFHVTALGS SCCEVEYTTL DDGDDNKETV LASDIKPMKK RAKKNPRKKD SCSCFLANVT VSSLHEDKLY VPVSFVRSNG LSNTYCKIVL LNEKGRSWKL SLVHDKSGSY LRQGWRSFCR ANGINGGRYT FKLVRNSETP VIRLYQAEHR HEDNTHSYLV GSLTPSSLRN DTLYLSRRFV NSNGLKGKCC EMILKNDNGG TWCLVLRRNE TNETTVISRG WRSFCHANGL KVRDPFKFKL VGTREKPVLQ FCPSESNRNT RHVDCSEGDV HSLSKKEASS SPCQNPFVTL TVTQYSIKSN KLRLPLRFTR VNGINKAGKI TLMGQDGVNW MVHLTNENKC GKLRLGRGWK GFCEAHGVKI GESFVLELIR EKDATPVLKF CNKVNCV // ID A0A078GDF1_BRANA Unreviewed; 256 AA. AC A0A078GDF1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC04g49490D protein {ECO:0000313|EMBL:CDY23421.1}; GN Name=BnaC04g49490D {ECO:0000313|EMBL:CDY23421.1}; GN ORFNames=GSBRNA2T00022030001 {ECO:0000313|EMBL:CDY23421.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY23421.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY23421.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032143; CDY23421.1; -; Genomic_DNA. DR EnsemblPlants; CDY23421; CDY23421; GSBRNA2T00022030001. DR Gramene; CDY23421; CDY23421; GSBRNA2T00022030001. DR OMA; WRRSECK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 162 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 162 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 256 AA; 28935 MW; 2D4B617B98941AA9 CRC64; MARNIAFGRI QEDMNKTSFF KILADEDLSS ESMRLIPNEF WRRSECKNLP PKVTLKVAWE SSWTVNLSPF MGCYLMERKG WEKFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCIEILK PLNTSSSNVK NEEMSCVDPV IAESKKKVDS NVYGASSSSF SAATFSLTIK KSHLTVLSIP VTFAKEHMPN ARTKFVIHDP KGKPWEVVYV PSNGSKLFSS GWRFLANGYG LAVGDLCTFR LVRPREMVLE VLHASS // ID A0A078GFU6_BRANA Unreviewed; 793 AA. AC A0A078GFU6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC03g16940D protein {ECO:0000313|EMBL:CDY23997.1}; GN Name=BnaC03g16940D {ECO:0000313|EMBL:CDY23997.1}; GN ORFNames=GSBRNA2T00024513001 {ECO:0000313|EMBL:CDY23997.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY23997.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY23997.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032152; CDY23997.1; -; Genomic_DNA. DR EnsemblPlants; CDY23997; CDY23997; GSBRNA2T00024513001. DR Gramene; CDY23997; CDY23997; GSBRNA2T00024513001. DR OMA; CCAPEES; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 292 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 548 598 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 292 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 87432 MW; 1957FFF9B63606B5 CRC64; MFEVKTGSKV CMNASCGSTS TVEWKKGWPL RSGSLADLCF RCGSAYETSL FCETFHLEQS GWRDCYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNCH QLNLNKRGEN PVVFSRLAMN SQHTNGESGI SSIRSEADLF SQPLVPGDDK REEFMAQRGF ANFMKPDNNN AGEMHEPSST PSQPSLNMAL ATLPYSPSFA TPVVDGKTLM GAASQSQSHI GQCSASSILQ KPSKSVPGTP PGTSKSAQAR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNLNLNIVP LFEKTLSASD AGRIGRLVLP KACAEAYFPP ISQSEGIPLK IQDVRGKEWT FQFRFWPNNN SRMYVLEGVT PCIQSMMLQA GDTVTFSRVD PGGKLIMGAR KAAYTVDMQV WVSTSYIRAR THPAQPNPKL IRPNRDPIDL EPNPTSINAS SCPSQTPEEL KGLPEHLSLK KSEMNGGRIC DDPSRVKDKK RTRTIGAKNK RLLLHSEELR VTWEEAQELL RPSPNAKPTV VVVEDHEFEE FDEPPVFGKR TIITSRPSGE QERWASCDDC TKWRRLPVDA LLPAKWTCSD NVWDVSRCSC CAPEESLKDL ENVLRAGKEY KKRRIQAAKT EEEPSGLDAL ASAASAAVLG DALGGDSEVA TTTRHPRHRV GCSCIVCIQP PSGKGRHKPT CGCTVCSTVK RRFKTLMMRR KKKQLERDEI AAAAEAYEEH NNKEAAEQGE TDENNGEKEG RIDLNCDPYN REDVEAVKEE SKRRECSGVA DDVLGLTELG GEAASCEELK AAT // ID A0A078GG64_BRANA Unreviewed; 304 AA. AC A0A078GG64; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC09g39750D protein {ECO:0000313|EMBL:CDY25460.1}; GN Name=BnaC09g39750D {ECO:0000313|EMBL:CDY25460.1}; GN ORFNames=GSBRNA2T00032675001 {ECO:0000313|EMBL:CDY25460.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY25460.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY25460.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032175; CDY25460.1; -; Genomic_DNA. DR EnsemblPlants; CDY25460; CDY25460; GSBRNA2T00032675001. DR Gramene; CDY25460; CDY25460; GSBRNA2T00032675001. DR OMA; GSSWRID; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 34906 MW; A61332E8107D9151 CRC64; MATNNYIAKL MEESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVFKLPWG SSWRIDLSKY QSFFYYMEQN GWDQFLSDNG LGDDELLTFT HKGNMCFNVS IYKTDCVEIL RPKRSATIAS SSRNKREEVN NVLEEERESL SASNYPVSET AESTVGGRLK QKRQLINLGK KQVKKAEKAN KCKKRKMDTE SDDSEAGTSS LVSEFTLTIK KSYVLFLGVP KRFAEMHMPK EETVFKIHDT KGKKSWEVTY VVSKIQSRFS RGWPGLVKDF GLEVGDVCTF ELIKPTEMIL TVSK // ID A0A078GG81_BRANA Unreviewed; 338 AA. AC A0A078GG81; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaCnng04580D protein {ECO:0000313|EMBL:CDY24391.1}; GN Name=BnaCnng04580D {ECO:0000313|EMBL:CDY24391.1}; GN ORFNames=GSBRNA2T00026623001 {ECO:0000313|EMBL:CDY24391.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY24391.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY24391.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032158; CDY24391.1; -; Genomic_DNA. DR EnsemblPlants; CDY24391; CDY24391; GSBRNA2T00026623001. DR Gramene; CDY24391; CDY24391; GSBRNA2T00026623001. DR OMA; CIDDNTS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 37991 MW; 8231D03CD3E46C90 CRC64; MDYSCIDDNT SNTSETLSMS KKTPPQATMR LYRMGSGGSS VVLDLENGVE TESSRKLPSS KFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAAASYD IAARRFRGRD AVTNFKSPSS DAESAFLEAH SKAEIVDMLR KHTYADELRQ SERKFLDGDG NGKKRREEVL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLP VSVTPSPTKG VLINLEDRTG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LRAGDVVCFE RSSGPDQQLY IDWKVRSGIE KTTSVQTVVR LFGVNIFNAT TNANTNDAVG ESSSKKRSRE VDLFALGCSK KQAIINVL // ID A0A078GHR2_BRANA Unreviewed; 563 AA. AC A0A078GHR2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC03g57090D {ECO:0000313|EMBL:CDY24168.1}; GN ORFNames=GSBRNA2T00024780001 {ECO:0000313|EMBL:CDY24168.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY24168.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY24168.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032154; CDY24168.1; -; Genomic_DNA. DR EnsemblPlants; CDY24168; CDY24168; GSBRNA2T00024780001. DR Gramene; CDY24168; CDY24168; GSBRNA2T00024780001. DR OMA; KCENHIQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 452 532 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 563 AA; 64147 MW; B2C764E6BB6A9AE2 CRC64; MASDQIMHAQ PEFLATDETN NYMYDQLWKL CAGHLFDLPK IGEELVTYIN DELCQLKPVF NIPSKIRCNV FSIKLKAETT TDEIYAEISL LPDTSEVEIP IPKCENHIQN IKCFTKVLSA SDTSKKGGFV LNKRHAIECL PPLDTSHLTQ SQEINATDIH GHEWKFKHAL KGTPQRHLFT SGWNEFAKAK KLVVGDSFVF FREENGESRV GIRKAAHHQQ ENIPSSVIST ESMHHGVVAT ALNAIKRKCM FVVFYKLGSS QFVVNIDKFI DGVNKKFGIG SRFLMKFEGK DFNEIRYYGS ILKVRDFSTN WKDSEWRCLE VQWDEAATIP RPDKVSPWEI EPLTHSSDIL KSGSNMWVPT LTQGQEVGHS SIQSSMSYSF PTTMSKPNYN EQMVQVMKET STTTATTSYR LFGVDLKIPA VTKDSIEPIN SYKKSKISKF FDEEKVDHNQ TRSHTKVRME GSVERTVDLS VFDGYNQLTD ELERLFDIKG KLHMHNQWKI VFINADGDMM LLGDDPWLKF CNTAKEIFIC SKNDAKIGDA DNKFSKGHPT LRTTILPPDV NNN // ID A0A078GIV9_BRANA Unreviewed; 355 AA. AC A0A078GIV9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC06g04340D protein {ECO:0000313|EMBL:CDY25209.1}; GN Name=BnaC06g04340D {ECO:0000313|EMBL:CDY25209.1}; GN ORFNames=GSBRNA2T00029169001 {ECO:0000313|EMBL:CDY25209.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY25209.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY25209.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032170; CDY25209.1; -; Genomic_DNA. DR EnsemblPlants; CDY25209; CDY25209; GSBRNA2T00029169001. DR Gramene; CDY25209; CDY25209; GSBRNA2T00029169001. DR OMA; MVDFANI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 118 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 193 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 118 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 193 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 40242 MW; 4A40708984DA59E9 CRC64; MITLSSCISE RLAANGGMNS LNEAKTMTET SGSSNSVLCL ANPMEQPHVP TTTRSVLSDT KYKGVVQQPN GHWGAQIYAE HRRIWLGTFK SAAEAAASYD SASIKLRGID ANSYRNFPWC EITTHEPAFQ ANYTTEAVLN MIKDCSYQHK FMEYLRRRSQ MVDFANINIV AAASKQSRAG RGVQDPFSCT PLFSKELTPS DVGKLNRLVI PKKHAVKHLP FISDVQKERE EGEIGGALDD VEVVFYDRAM RQWKFRYCYW RSSQSFVFTR GWNGFVREKR LKEKDVIVFY HCDVPTNVKT LQGQSNSFLM IDVDYFTDKG SVAPKEVDKM VHNTSEEEMK TETKGGFMLF GVRIQ // ID A0A078GJI5_BRANA Unreviewed; 1049 AA. AC A0A078GJI5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA06g13320D {ECO:0000313|EMBL:CDY26690.1}; GN ORFNames=GSBRNA2T00035586001 {ECO:0000313|EMBL:CDY26690.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY26690.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY26690.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032193; CDY26690.1; -; Genomic_DNA. DR RefSeq; XP_013641917.1; XM_013786463.1. DR EnsemblPlants; CDY26690; CDY26690; GSBRNA2T00035586001. DR GeneID; 106346979; -. DR Gramene; CDY26690; CDY26690; GSBRNA2T00035586001. DR KEGG; bna:106346979; -. DR OMA; NDIAMND; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 921 1014 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1049 AA; 116148 MW; A38D96523B268CD0 CRC64; MKAPSNGFHP NPAEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKINR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA GAAATTQLPS SYNLPNNFAP NDHSKLLNFQ SPNLSPANTQ FNKPNMVSHI SQQMQAQPAM VQSQQQLQQQ VQMSHQQLQQ QHHQHQQQGG YNSGSVNNGV SVVSNQVSCQ NQSAGFTQSQ LQQQSILSNG AKMTHQNIVS AGNKGSSQMT AQELQFQQQL ELHNSTQLLR NQQEQSSMHS LQQNPQQLQM QQQQSSKPSP SQQLQMQLLQ KLQQQQQSTP PPGSSSLQPQ LSSLQQTQSH QLQQLLSSQN QQPLPQSNNN GFMQPPQIQA SHHQQQGYMN NNKPIVRSQS GHIDGEAPSC STSPSANNTG HDNVSPTNFL SRNQQQGQAV SVPASNPVQQ GMVNLKSAGE QYKFKGAVTD QIDVTTAGTT YCPDVVVGPG QQQQQTFPLP SFGFDGDLQQ SQHPRNNLAF AGNLEAVNPD ALYSQKDFQN LVVPNYGNAP RDIETELSSA SQSFGIPSIP FKSGGSNEIG GINDSGIMNG GIWPNQAQRM RTYTKVQKRG SVGRSIDVTR YSGYEELRND LARMFGIEGQ LEDPQISDWK LVYTDHENDI LLVGDDPWEE FVNCVQNIKI LSSAEVQQMS LDGDLAAIPT TNQACSETDS GNAWKVHYED TSAAASFNR // ID A0A078GKC0_BRANA Unreviewed; 302 AA. AC A0A078GKC0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=BnaA05g14370D protein {ECO:0000313|EMBL:CDY25846.1}; GN Name=BnaA05g14370D {ECO:0000313|EMBL:CDY25846.1}; GN ORFNames=GSBRNA2T00033278001 {ECO:0000313|EMBL:CDY25846.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY25846.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY25846.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032181; CDY25846.1; -; Genomic_DNA. DR EnsemblPlants; CDY25846; CDY25846; GSBRNA2T00033278001. DR Gramene; CDY25846; CDY25846; GSBRNA2T00033278001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 34385 MW; 8AB6D8BA9F191D70 CRC64; MVFKKRKSRW RKKKKQIFPA ASAGGEAEIT QSNRSVGAER VVDPEAALYK ELWHACAGPL VTGHIEQVEA SKNQAGGTVG FTFVCGAYAQ ITLFLEPIQD ENAIEKEAPL PPPPRFQVHS FCKTLTASDT STHGGFSVLS RHADECLPPL DMSRQPPTQE LVAKKLHANE WRFRHIFRGQ QRRHLLQSGW SVFVSSKRLV AGDAFISLSF VGFWGENGEL RVGVRRAMRQ QGNARRKAHR LQREQFPLLC FFTRSVEIIY DAILHMVAQK HFHELIEIQW YLQMMCEKQL KLQDTRSSSS MP // ID A0A078GLT3_BRANA Unreviewed; 304 AA. AC A0A078GLT3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC04g51560D protein {ECO:0000313|EMBL:CDY27515.1}; GN Name=BnaC04g51560D {ECO:0000313|EMBL:CDY27515.1}; GN ORFNames=GSBRNA2T00038190001 {ECO:0000313|EMBL:CDY27515.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY27515.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY27515.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032205; CDY27515.1; -; Genomic_DNA. DR EnsemblPlants; CDY27515; CDY27515; GSBRNA2T00038190001. DR Gramene; CDY27515; CDY27515; GSBRNA2T00038190001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 33986 MW; DB02CF9A26289582 CRC64; MMTNLSLARE GEAEAKKPIE KVEREHMFDK VVTPSDVGKL NRLVIPKQHA ERYFPLDSSS NGKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRCVGDS RLFIDWRRRP KVPDYPTSTA HFAGGVMFPR FYSFPTATTS TCYDLYNHQP PRHHHIGYGY PQIPREFGYG YFVRSVDQRS VVADPLVIES VPVMMRGGAR VSQEVVGTAG KRLRLFGVDM ECGESGVTNS TEEESSSSGG SLPRAGGGGA SSSSSLFQLR LGSSCEDDHF SKKGKSSLPF DLDQ // ID A0A078GPN8_BRANA Unreviewed; 619 AA. AC A0A078GPN8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC04g18710D {ECO:0000313|EMBL:CDY27291.1}; GN ORFNames=GSBRNA2T00037198001 {ECO:0000313|EMBL:CDY27291.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY27291.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY27291.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032202; CDY27291.1; -; Genomic_DNA. DR EnsemblPlants; CDY27291; CDY27291; GSBRNA2T00037198001. DR Gramene; CDY27291; CDY27291; GSBRNA2T00037198001. DR OMA; EIPERRF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 500 593 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 619 AA; 69275 MW; 70D8D63D48B47588 CRC64; MDPQLAARNH SSGKPGGALS DALVRELWHA CAGPLVTLPR EGERVYYFPE GHMEQLEASM HQGLEQQMPS FNLPSKILCK VINIQRRAES ETDEVYAQIT LLPEADQSEP MSPDAPVEEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA TDLHNNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRQNEE LRVGVRRHMR QQTNIPSSVI SSHSMHIGVL ATAAHAITTG TIFSVFYKPR TSRSEFIVSV NRYLEAKNQK LSVGMRFKMR FEGEEAPEKR FSGTIVGVQE NKSSVWHDSE WRSLKVQWDE SSSVFRPERV SPWELEPIVA NSMRSSHPPP QRNKRPRPPG LPSPTTAPST PVTADGLWKS PAVNPSSVPL FSPSANGGNK SFGKQTNGNV CRLFGFELVE NVNVDECFSA ASVSGAVAVD QPVPSHEFDS GRQSEPLNVN QSNIPSGSGD PEKSSPRPIR SCTKVHMQGS AVGRAVDLTR SECYEDLFRK LEEMFDIKGE LLESTKKWQV VYTDDEDDMM MVGDDPWNEF CGMVRKIFIY TPEEVKKLSP KNKLTVNVRM QSKTDAEENG NTEGRSSLF // ID A0A078GPS8_BRANA Unreviewed; 309 AA. AC A0A078GPS8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC02g36350D protein {ECO:0000313|EMBL:CDY28525.1}; GN Name=BnaC02g36350D {ECO:0000313|EMBL:CDY28525.1}; GN ORFNames=GSBRNA2T00040437001 {ECO:0000313|EMBL:CDY28525.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY28525.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY28525.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032221; CDY28525.1; -; Genomic_DNA. DR EnsemblPlants; CDY28525; CDY28525; GSBRNA2T00040437001. DR Gramene; CDY28525; CDY28525; GSBRNA2T00040437001. DR OMA; IPIRMED; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 35066 MW; 9C7239E4632900F3 CRC64; MMMDEVHDDV ETKASALMAS VHHRPGFGSG SGHVHGLSAS VPLLGVNWKR RRMPRQRRSS SSFNLLSFPT LPPSSSHVPT PLPARKIDTR RLRFLFQKEL KNSDVSSLRR MILPKKAAEA HLPALESKEG IPIKMEDLDG LHVWTFKYRY WPNNNSRMYV LENTGDFVNA HGLQQGDFIM VYQNLYPNNY VIQARKASEE ENLTSFEEDD VYTDLTKIEN TVVNDLLIQD YNHHYNSDNG KCSYYYPIID DVTATATTAS FVYDTTALTS NDTPLDFLGG LTMRTNNYYS KVGSFEGFGS VENISLDDF // ID A0A078GRX5_BRANA Unreviewed; 608 AA. AC A0A078GRX5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaCnng05140D {ECO:0000313|EMBL:CDY27929.1}; GN ORFNames=GSBRNA2T00038829001 {ECO:0000313|EMBL:CDY27929.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY27929.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY27929.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032212; CDY27929.1; -; Genomic_DNA. DR RefSeq; XP_013748526.1; XM_013893072.1. DR EnsemblPlants; CDY27929; CDY27929; GSBRNA2T00038829001. DR GeneID; 106451191; -. DR Gramene; CDY27929; CDY27929; GSBRNA2T00038829001. DR KEGG; bna:106451191; -. DR KO; K14486; -. DR OMA; VRLEDHH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 608 AA; 66688 MW; 3B77E1342278B9D1 CRC64; MGGLIDLNVT EEQEEETTPS SGSGSLSPCD SSSSASAFGV SGSSSRSSSS GVCLELWHAC AGPLISLPKR GSLVLYFPQG HLEQAPDFSA AIYGLPPHVF CRILDVKLHA ETATDEVYAQ VSLLPESEDI ERKVREEVID VDGGEEDYVV LKRTNTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YTQPRPSQEL LARDLHGLEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD DGKLRLGVRR ASQIEGASAF SSQYNQNMNH NNFAEVAHAI STNSAFNIYY NPKASWSNFI IPAPKFLKTV DYPFCIGMRF KARVESEDAS ERRSPGIITG INDLDPIRWP GSKWRCLLVR WDDIEANGHR QQRISPWEIE PSGSISSSGS FITTGPKRSR IGFSSGKPDI PVSGSGATDF EESLRFQRVL QGQEIFHGFI NTSSDGGAGA RRGRFKGTEF GDSYGFHKVL QGQETVPAYP MMTDQRHQGM SQRNIWCGPF QNFSTRILPP SSVHVSSPLP SSGTNVRLED HHGGSGRCRL FGFPLRDETT AVGSGMVVGP CVEGQNGSSI RGGVSAVQGN HHGRDIYGMR DMLLDIAL // ID A0A078GT35_BRANA Unreviewed; 344 AA. AC A0A078GT35; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA05g15500D protein {ECO:0000313|EMBL:CDY29620.1}; GN Name=BnaA05g15500D {ECO:0000313|EMBL:CDY29620.1}; GN ORFNames=GSBRNA2T00043362001 {ECO:0000313|EMBL:CDY29620.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY29620.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY29620.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032240; CDY29620.1; -; Genomic_DNA. DR EnsemblPlants; CDY29620; CDY29620; GSBRNA2T00043362001. DR Gramene; CDY29620; CDY29620; GSBRNA2T00043362001. DR OMA; METIMIM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 97 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 97 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 39290 MW; C40A324671FFB67E CRC64; MDSLKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVQQQNG HWGAQIYADH KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITVHEPDFQK SHTTEAVLNM IRESSYQQKF SDYLIVRSQM VAIANINIVG SKQRRGGGEE STKCFSCTEL FHKELTPSDV GKLNRLVIPK KHAVKHLPFI SERDEGETGG AVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNGFV KEKNLKEKDV IVFYTCDVPS NFKTLEGQSN KFLMIDVDYF TDKGSVEPKE VNEMVHNVSE REMKTENFFG TKVEEETKSE VSKGGFMLFG VRIQ // ID A0A078GW85_BRANA Unreviewed; 248 AA. AC A0A078GW85; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 12-APR-2017, entry version 16. DE SubName: Full=BnaA06g14090D protein {ECO:0000313|EMBL:CDY29387.1}; GN Name=BnaA06g14090D {ECO:0000313|EMBL:CDY29387.1}; GN ORFNames=GSBRNA2T00042970001 {ECO:0000313|EMBL:CDY29387.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY29387.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY29387.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032236; CDY29387.1; -; Genomic_DNA. DR EnsemblPlants; CDY29387; CDY29387; GSBRNA2T00042970001. DR Gramene; CDY29387; CDY29387; GSBRNA2T00042970001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 183 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 248 AA; 28405 MW; 996BED1F2271B3C6 CRC64; MLFQLRFSAE ITQSNRSVGA ERVVDPEAAL YKELWHACAG PLVTGHIEQV EASKNQAGGT VGFTFVCGAY AQITLFLEPI QDENAIEKEA PLPPPPSRHA DECLPPLDMS RQPPTQELVA KKLHANEWRF RHIFRGQQRR HLLQSGWSVF VSSKRLVAGD AFISLSFVGF WGENGELRKC EKKAHRLQRE QFPLLCFFTR SVEIIYDAIL HMVAQKHFHE LIEIQWYLQM MCEKQLKLQD TRSSSSMP // ID A0A078GW89_BRANA Unreviewed; 876 AA. AC A0A078GW89; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA06g14040D {ECO:0000313|EMBL:CDY29392.1}; GN ORFNames=GSBRNA2T00042975001 {ECO:0000313|EMBL:CDY29392.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY29392.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY29392.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032236; CDY29392.1; -; Genomic_DNA. DR RefSeq; XP_013641924.1; XM_013786470.1. DR EnsemblPlants; CDY29392; CDY29392; GSBRNA2T00042975001. DR GeneID; 106346987; -. DR Gramene; CDY29392; CDY29392; GSBRNA2T00042975001. DR KEGG; bna:106346987; -. DR KO; K14486; -. DR OMA; ADEWISH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 876 AA; 96925 MW; D9C71D7AAA153F1F CRC64; MMASVEEKMK TNGLVNGGTT TTSQSSLLEE MKLLKDQSGT RKPVINSELW HACAGPLVCL PQVGSLVYYF SQGHSEQVAV STRRSATTQV PNYPNLPSQL MCQVHNVTLH ADKDSDEIYA QMSLQPVHSE RDVFPAPDFG LLNRSKHPAE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP LDYTAQPPTQ ELVVRDLHEN TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR DEKSQLMVGV RRANRQQTAL PSSVLSADSM HIGVLAAAAH ATANRTPFLI FYNPRACPAE FVIPLAKYRK AICGSQLSVG MRFGMMFETE DSGKRRYMGT IVGISDMDPL RWSGSKWRNL QVEWDEPGCN DKPTRVSPWD IETPESLFIF PSLTSGLKRQ LHPSYFAAGE TEWGSLIKRP LIRDSTNGIL PYASFPNMAS EQLMRMMMRP HNNNNNQNAS SFMSEMQQNL LRGHGGLLGD MNMQQQPMVS EMVQPESKLT VNPSTSNTSG QEQNLFQSMS APPKPTLSGC SSGRVNHGNE QKSVEQASQV RTVAVCNESA LSPLQADPCP DTSQQIYPPQ SDPINGFSFL ETEELTSQVS SFQSLAGSYK QPSLLTSQDS SAVVLPDSTN SPLFHDVWDN QLKFDQFSPL MQQDLYGCQD STTSNILDPP PLSNTVLDDF CAIKETDFQN HHPSDCLVGN SNTSFAQDVS QITSASFADS KAISRQDNSG GTTGTSSSNV DFDDTSLLQQ NCKGSWQKLA ATPRVRTYTK VQKTGSVGRS IDVTSFRDYN ELKTAIECMF GLEGLLTRPQ SSGWKLVYVD YESDVLLVGD DPWEEFVGCV RCIRILSPTE VEQMSEEGMK LLNSACINDL KSSVSK // ID A0A078GWT6_BRANA Unreviewed; 325 AA. AC A0A078GWT6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA05g15710D protein {ECO:0000313|EMBL:CDY29599.1}; GN Name=BnaA05g15710D {ECO:0000313|EMBL:CDY29599.1}; GN ORFNames=GSBRNA2T00043338001 {ECO:0000313|EMBL:CDY29599.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY29599.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY29599.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032240; CDY29599.1; -; Genomic_DNA. DR EnsemblPlants; CDY29599; CDY29599; GSBRNA2T00043338001. DR Gramene; CDY29599; CDY29599; GSBRNA2T00043338001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 107 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 179 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 107 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 179 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 37504 MW; 473A77F83D85F70B CRC64; MGICNQMTET STSSNPLLPL KKRKRPVDDT TDNVLAVATK KVALLGNSKY KGVVEHHRNG HWGAQIYIDH KRIWLGTFKS SVEAAMAYDS ASIKLRSFDA TCHRNFPLNT STVHEPNFQK GYTTEAVLEM IKDGSYQQKF KDYRSLPFHN VASINLVGSE RVQGDQDSTK YRLTCTELFR KGLTPSDVGK LNRLVIPKRH AVKYLPFINE REEGEIVEDV EVVFFDKTMR QWKFRYCYWT SSQSFVFTSG WKRFVKEKNL KERDVIVFYR CDLVGQSKNF LMIHVQYSSE GEVKTENFVN SKLKEEETKS VDNKGGFMLF GVKIQ // ID A0A078GWV7_BRANA Unreviewed; 788 AA. AC A0A078GWV7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=BnaA04g17550D protein {ECO:0000313|EMBL:CDY29672.1}; GN Name=BnaA04g17550D {ECO:0000313|EMBL:CDY29672.1}; GN ORFNames=GSBRNA2T00043437001 {ECO:0000313|EMBL:CDY29672.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY29672.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY29672.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032241; CDY29672.1; -; Genomic_DNA. DR EnsemblPlants; CDY29672; CDY29672; GSBRNA2T00043437001. DR Gramene; CDY29672; CDY29672; GSBRNA2T00043437001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 295 396 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 548 598 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 295 396 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 698 723 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 788 AA; 86681 MW; AD2F2DB9F15147C9 CRC64; MFQVKTGSKM CMNASCGSTS TVEWKKGWPL RSGALADLCF RCGSAYETSL FCETFHLDQS GWRECYLCNK RLHCGCIASK LVVEFMDFGG VGCTTCTNCH QPNLNNRGEN PGLFSRLPMN RQHTNGESGM NVGKADLFSQ PLVQGDDKRE EFMPHRGFSN LMKPDNATTT GYRHDANGTH ESSSTPSQPP SLNMPMAALP YSLNFATATK KLMDAASQSH TVQSSASGIL QTPSKSVPGT PSGPGTSKSA QARIGRPPNE GRGRSHLLPR YWPKYTDKEL QQISGNLNLN IVPLFEKTLS ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGK EWTFQFRFWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GFRKAAHTGV IQVLLHSYLD PIFINRGVVL PTDTSSSGVT ETPTSINASS CPAQTPEELK GLPEHLNSNH GGSSLKKSEV NGVKDKKRTR TVGAKHKRML WRSEEAMEVR ITWEETQDLI SPSPGEKPTV VVIEEHEFEE FNEPPVFGKR TIVTSRPSGE QERWGSCDDC SKWRRLPVDA LLPAKWTCSD NVWDESRCSC SAPEESLKEL ENVLRMSKEY KKRRSGVSQT VRTEEELTGL DALASAAALG DTLGEEEEPA TTTRHPRHRV GCSCIVCIQP PSGKGRHNSS CLCTVCSTVK RRFKTLMMRR KKKQLEREEI EAAATAADQE NKEEGKIDLN SDPCNRGEVE AVGVEEKVES EKREAGECLG VAQADDVVGV TELEGEGEKV GEESKSSS // ID A0A078GXK8_BRANA Unreviewed; 221 AA. AC A0A078GXK8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA05g16150D protein {ECO:0000313|EMBL:CDY29348.1}; GN Name=BnaA05g16150D {ECO:0000313|EMBL:CDY29348.1}; GN ORFNames=GSBRNA2T00042915001 {ECO:0000313|EMBL:CDY29348.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY29348.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY29348.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032235; CDY29348.1; -; Genomic_DNA. DR EnsemblPlants; CDY29348; CDY29348; GSBRNA2T00042915001. DR Gramene; CDY29348; CDY29348; GSBRNA2T00042915001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25491 MW; 2E0BAF9308111F14 CRC64; MNMDSAQNEF NKRARLFEDR QKEETRVTHP LIPKSNAPLN EGYEGSTTTQ SLFTDSKPEE TPKIPKKRGR KKKNPNPEEI NSSTPENSSK FYKSASDRKR TVTAEERERA ISAAKTYEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGIAGFIKLQ LGEKQWPVRC LYKAGRAKFS QGWYEFTLEN NIGEGDVCVF ELLRTRDFVL KVTAFRVTQY V // ID A0A078GY59_BRANA Unreviewed; 830 AA. AC A0A078GY59; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA03g49980D {ECO:0000313|EMBL:CDY30172.1}; GN ORFNames=GSBRNA2T00044758001 {ECO:0000313|EMBL:CDY30172.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY30172.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY30172.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032250; CDY30172.1; -; Genomic_DNA. DR EnsemblPlants; CDY30172; CDY30172; GSBRNA2T00044758001. DR Gramene; CDY30172; CDY30172; GSBRNA2T00044758001. DR OMA; PFRENDF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 108 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 293 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 744 822 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 293 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 830 AA; 92666 MW; C2B884233AFCBA47 CRC64; MRSITCKTKS DRLKKTFRDQ ISDPLVYLCD EIALVTCKYY WMDINGDAQY FRNVLEARFR ELPQGSDSDS GSEAGNGRPM KLPCNVGYIS NFIIFFLHSV LSIFMPGIKG LTYQIVTIFG AKPNLSPSYT RTLFISLCTT KVNSYPILKQ KLSCRIFRFS RNQEKGFFRT ESSRTCLRST TTVQGIITFV RNDKCNGSDE KRIRERFRST AMACMCWRHG HAENAYDHVD FKNLPIPPMV LCRVLAIKYM ADPESDEVFA KLRLIPLKDD DHDYGDGQEG NGFETNSEKT PSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYNAEPPV QTILAKDVHG DVWKFRHIYR GTPRRHLLTT GWSNFVNQKK LVAGDSIVFM RAESGDLCVG IRRAKRGGIG NGPEYSPGWN PIGGSCGYSS LLREDESNSL RRSNCSLADR KGKVAAESVI EAATLAINGR GFEVVYYPRA STSEFCVKAL DARAAMRIPW CSGMRFKMAF ETEDSSRISW FMGTVSAVSV SDPIRWPNSP WRLLQVAWDE PDLLQNVKRV NPWLVELVSN VHPIPLTSFS PPRKKMRLPQ HPDYNNLINS IPVPSFPSNP LIRSNPLSSV LDNVPVGLQG ARHNAHQYYG LSSSDLHHYY LNRPPPPPQP SALPLSQPLG LRNIDSRNEK GFCFLTMGTT PCNDDTESKK SHIVLFGKLI LPEEQISEKG STDTANTSGG SKLSSSEEGS PCSNKAHDAA GLETGHCKVF MESDDVGRTL DLSVLGSYEE LSRKLSDMFG IQKAEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIV TEQGSESVVV // ID A0A078GYL7_BRANA Unreviewed; 757 AA. AC A0A078GYL7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA10g13260D {ECO:0000313|EMBL:CDY31545.1}; GN ORFNames=GSBRNA2T00047861001 {ECO:0000313|EMBL:CDY31545.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY31545.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY31545.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032274; CDY31545.1; -; Genomic_DNA. DR RefSeq; XP_013667138.1; XM_013811684.1. DR EnsemblPlants; CDY31545; CDY31545; GSBRNA2T00047861001. DR GeneID; 106371606; -. DR Gramene; CDY31545; CDY31545; GSBRNA2T00047861001. DR OMA; CVESENG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 636 718 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 757 AA; 83793 MW; 5B78409F680EEFE2 CRC64; MEFDLNTEFA EVEEEENDKG KRLGVSPSSS SSCSSGSSSS STTASASSIY SELWHACAGP LTSLPKKGNV VVYFPQGHLE QGAMVSYSSP LDIPKLDLSP QIFCRVANVH LLANKETDEV YTQVTLLPLQ ELSVLNGEGK EVRELGGDEE KNGSSSVKKT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF APLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK SLVSGDAVLF LRDENGELRL GIRRSARPRN GLPDSIIQKY SSSSILSLVA NAVSNKSMFH VFYSPRATHS EFVIPYEKYI TSIKNPICIG TRFRMRFEMD DSPERRCAGV VTGVCDMDPY RWPNSKWRCL LVRWDESFMS DHQERVSPWE IDPSGSLPPL SIQSSPRPKR PWAGLLGTTT PQGNPITERG GFLDFEESVR PSKVLQGQEN IGSATSSSPL QGFDVMNRRI LDFAGMQQSH ANPLLLSSRV KDRFGEFVDT TSLDLDRFPR VLQGQEICSL RSFPQIAGLS PGKASLGYNG AFAYQANKTS FYPLASQGIR SSHIPYQSAG DKSLSHPSSR KFDAQGEDGG LPKIDMMGTE KGREVNMNAS TTGCKLFGFS LPVGTPASNQ QSSSKRICTK VHKQGSLVGR AIDLSRLNGY NDLLTELERL FNMEGLLRDP EKGWRILYTD SENDMMVVGD DPWHDFCSVV LKIHLYTKEE VENGNDDNRS CLEQAALMME ASKSSSVSQP DSSPTGH // ID A0A078GYP3_BRANA Unreviewed; 310 AA. AC A0A078GYP3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA10g12960D protein {ECO:0000313|EMBL:CDY31575.1}; GN Name=BnaA10g12960D {ECO:0000313|EMBL:CDY31575.1}; GN ORFNames=GSBRNA2T00047897001 {ECO:0000313|EMBL:CDY31575.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY31575.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY31575.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032274; CDY31575.1; -; Genomic_DNA. DR EnsemblPlants; CDY31575; CDY31575; GSBRNA2T00047897001. DR Gramene; CDY31575; CDY31575; GSBRNA2T00047897001. DR OMA; YMIEEEE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 34901 MW; EBB8F3E2B82BC0F2 CRC64; MCYFQNIRSA QRETTMKKVT GDSSGDRLPK FFKVYLPNDS GDDLEIPVSF NSCLPSSVPK SVTVTNINGH VWKLKLRKLS GDPEKFSMVD GWKRIVKDED LKGGEFLAFE FDGSRLFNFC VYGQATCKKL GKSAEVDDDD DDDDDVIVID DDDDDDDDDE DDDGDDDEAA DDEDDDEDVD VDVEADDVDD GMETDDGDEH RQLLDDPDSP SFTVILNPKK KSQLLIPSHI MKDYNLHFTE RITIVDPLVP KFGTLERKIK LQDNGCLFVK GFGSVFRRNN VKTTDTIICE VKKNGNDVAH ILKVHIVRGL // ID A0A078H0V8_BRANA Unreviewed; 257 AA. AC A0A078H0V8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA04g25590D protein {ECO:0000313|EMBL:CDY30458.1}; GN Name=BnaA04g25590D {ECO:0000313|EMBL:CDY30458.1}; GN ORFNames=GSBRNA2T00045162001 {ECO:0000313|EMBL:CDY30458.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY30458.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY30458.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032253; CDY30458.1; -; Genomic_DNA. DR RefSeq; XP_013725469.1; XM_013870015.1. DR EnsemblPlants; CDY30458; CDY30458; GSBRNA2T00045162001. DR GeneID; 106429273; -. DR Gramene; CDY30458; CDY30458; GSBRNA2T00045162001. DR KEGG; bna:106429273; -. DR OMA; RSWRVVI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 163 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 163 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 28858 MW; F4BACB5D198EE40F CRC64; MARNIAFGRI QEDMNKTSFF KILADEDLSS ESMRLIPNEF WRSSECKNLP PKVTLKVAWG SSWPVNLSTF MGCYLMERKG WDKFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCVEILK PLNTSSSNVK NEEMSCVDPV IAESKKQKVD SNVYGASSSS SSAATFSLTI KKSHLTLLSI PVTFAKEHMP KVRTKFVIHD PKGKPWEVVY VPSNGSKLFS SGWRFLANGY GLAVGDVCTF RLVRPKEMVL EVLHASP // ID A0A078H2E7_BRANA Unreviewed; 210 AA. AC A0A078H2E7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA10g12970D protein {ECO:0000313|EMBL:CDY31574.1}; GN Name=BnaA10g12970D {ECO:0000313|EMBL:CDY31574.1}; GN ORFNames=GSBRNA2T00047896001 {ECO:0000313|EMBL:CDY31574.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY31574.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY31574.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032274; CDY31574.1; -; Genomic_DNA. DR EnsemblPlants; CDY31574; CDY31574; GSBRNA2T00047896001. DR Gramene; CDY31574; CDY31574; GSBRNA2T00047896001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 210 AA; 23014 MW; BC7A9785337CC855 CRC64; MNKGTGDSSD DCLPKFFKVY LPDDSGDDLD IPISFNSFLP KPLPEYIIVR SIYGNIWKLK LMKCCGDDVD KVSMVNGWKR IVKDEDLKGG EFLAFEFDGS RLFNFCIYGQ ATCKRLGSSV KTKEITDESE GEDGKSCVDV IVIDDDSTDD DDDVSSGQGS GMEDQSTKDI IVIDEDTSDG DDETRSGVET EIIEKGSSEV STKSDSGEGE // ID A0A078H3B3_BRANA Unreviewed; 545 AA. AC A0A078H3B3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaC09g22010D protein {ECO:0000313|EMBL:CDY33105.1}; GN Name=BnaC09g22010D {ECO:0000313|EMBL:CDY33105.1}; GN ORFNames=GSBRNA2T00053767001 {ECO:0000313|EMBL:CDY33105.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY33105.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY33105.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032306; CDY33105.1; -; Genomic_DNA. DR EnsemblPlants; CDY33105; CDY33105; GSBRNA2T00053767001. DR Gramene; CDY33105; CDY33105; GSBRNA2T00053767001. DR OMA; ALCTNDG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50249; SSF50249; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 61207 MW; 62452F0D19713372 CRC64; MSGSEEDDVL PRFFKVFLSQ TASESMAIPM SFNENLEDPL PQTAKLQGIG SGVWTVSFKK IRDRAYFTSG WSKFAEDHEF KDGEFLTFVY DGSHTFEVSI FGRSGCKEIR AAVETVNLSD VDSDKKEEEE EDSSVVADTN KEEEEEGDDD DPSFDAGEDD EVSQSVDSDD IVSNAEVVEG FSNLEVESNP CFTSTLKSRI YELLIPANVV KEHKLKFCDR IKYIDGEGIM HGVKGKWTDD RIFFKGWDKI CRRLKSMILS TGTVAQGFNA QNRVNRYEDE LKRGSIYTLT NFFGSNNKRF KFHSYADFEA NCDLRGDLHD VVGHLKLVDG QTLHQRLALC TNDGSTSRKI MVHLQLKDGP VVNVDLWDQA AENFRRKFDE SVTTPTILMV TTVNPKRLGG KLCLSSMSSS RVFLDQEVDP TKELAVNPAF ASSVNTVEVV NVETLTIREI ADFIKRQPAK IAYFDCIATI DDVKLGTEWY YIACKVCQTK LTHGPTMLMC PKCCNENATA LANFRVELSV YDNEEQCTFI ILGDAGKELT GRKAT // ID A0A078H3S7_BRANA Unreviewed; 312 AA. AC A0A078H3S7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA01g19720D protein {ECO:0000313|EMBL:CDY33305.1}; DE SubName: Full=BnaA06g39680D protein {ECO:0000313|EMBL:CDY64949.1}; DE SubName: Full=BnaA07g00420D protein {ECO:0000313|EMBL:CDY31953.1}; GN Name=BnaA01g19720D {ECO:0000313|EMBL:CDY33305.1}; GN Synonyms=BnaA06g39680D {ECO:0000313|EMBL:CDY64949.1}, GN BnaA07g00420D {ECO:0000313|EMBL:CDY31953.1}; GN ORFNames=GSBRNA2T00043900001 {ECO:0000313|EMBL:CDY64949.1}, GN GSBRNA2T00050743001 {ECO:0000313|EMBL:CDY31953.1}, GN GSBRNA2T00054087001 {ECO:0000313|EMBL:CDY33305.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY33305.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY33305.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). RN [2] {ECO:0000313|EMBL:CDY33305.1} RP NUCLEOTIDE SEQUENCE. RA Genoscope - CEA; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032283; CDY31953.1; -; Genomic_DNA. DR EMBL; LK032310; CDY33305.1; -; Genomic_DNA. DR EMBL; LK034607; CDY64949.1; -; Genomic_DNA. DR EnsemblPlants; CDY31953; CDY31953; GSBRNA2T00050743001. DR EnsemblPlants; CDY33305; CDY33305; GSBRNA2T00054087001. DR EnsemblPlants; CDY64949; CDY64949; GSBRNA2T00043900001. DR Gramene; CDY31953; CDY31953; GSBRNA2T00050743001. DR Gramene; CDY33305; CDY33305; GSBRNA2T00054087001. DR Gramene; CDY64949; CDY64949; GSBRNA2T00043900001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35345 MW; AAF4406381A8DE23 CRC64; MVPIPYLKSP NQTRFPLIFG KPFPLSTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH DHQNNRTEAR FSYSWDYCFK AEVTDSNVRE DKLNLPVGAT GCNALNKECK KAKLVNIEGK AWNVSMRFNE SGGFYYIKGW RKFCAENKCH IGDSFVFNVV GDGNTLPLMC VCSPSKECLK SAGDIASSSR VN // ID A0A078H8C2_BRANA Unreviewed; 1042 AA. AC A0A078H8C2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA09g41270D protein {ECO:0000313|EMBL:CDY34760.1}; GN Name=BnaA09g41270D {ECO:0000313|EMBL:CDY34760.1}; GN ORFNames=GSBRNA2T00057300001 {ECO:0000313|EMBL:CDY34760.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY34760.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY34760.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032341; CDY34760.1; -; Genomic_DNA. DR EnsemblPlants; CDY34760; CDY34760; GSBRNA2T00057300001. DR Gramene; CDY34760; CDY34760; GSBRNA2T00057300001. DR OMA; IVETTEW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 8. DR Gene3D; 2.40.330.10; -; 8. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 7. DR SMART; SM01019; B3; 8. DR SUPFAM; SSF101936; SSF101936; 8. DR PROSITE; PS50863; B3; 8. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 294 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 524 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 651 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 680 737 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 782 878 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 939 1037 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 294 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 524 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 556 651 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 680 737 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 782 878 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 939 1037 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1042 AA; 117744 MW; 52710D10B8DFEDD8 CRC64; MAKSTLLHPQ FFHTLVPGCG FHTHLIIPLD FFSKYIEGRS VDNTAHLKSG SSDRTWQVKM AGPILSDGWR EFAVAHSLQA GHLILVRYEG YMVFHVTDCR EIPSNNNKHS HPRTDVDDLP KKKKRAKTNS NETEADSSSL DNSCFVATVT AFNLLIDTLY LPQHFTSTNG LTRESHKIVL IDGEGRSWTL DLRFNASSDT FYMTRGWRSF CEENGQEAGG FFTFKLVGNG ETLVLSFRPT ESISSTMQRD SSQEEDTEWE SDEDEPLMET EKKKSNTKRR AVPYSSYSPC HKRFLTFTLP PDYFRIERLS LPKQFLRENG INKPGEICLL DKDGMKWPTS LLRDKKGIMS LGKGWKEFVK SNGLASGFTL KLIWEDTTPA FSLCCPESTS DKEQQEYFKH IKKQSLYIDP SNNGDNSSKD SSPSSHNPLV TIKIRPDLLT CNRMRLPKQF VMESNMNKPG VIYLLGKDDT KWTTKLVKER DGRMKLGSGW TVFAEANGFK TGESVTLESI WEDGTPMIRF LRTGSNSSET KKNESVSTEV TEPKTSGSSS EIHDRFVTLT LLPEDVKAGV LIIPSQLLEA NGVNKLGKIT ILGENKMELS GYLLSRGGTV ALENGWGEFC EANGVKLGES FTLEFIKKPD KTTHVEASSS RLPQPLDHSC SLLLQACRRK KNEHMTTAKL RSDVSDDITW KVKIEDGRKL TDGWKEFALA HDLRVGDIVI FRQEKDMAFH VTMFGPSCCE IQYGSRLNKN KLNLSKIQNK KKVKKKKNKK RYMKSSSLDP SCFVNNVRPS SLRDNRLTLP KRFVRENGLE TRCGEIVLMN EKGRSWTLNL SRKDSCGTMY ITGGWKSFCN ASGLRAGSLF TFKLIKRGDT LVLLKSPSST KSAEEDCLEA YGIELDSEEA SNQDEKPRLL WKASTSSPSQ KKPRSLWKAS TSSPSQNLFL TLTLKISDVK NSRLFIPVNF TRLHGINKET KMVMLDKNGV KWSTSLRSET RGGDRIRLVG GWKEFFKANC VEIGESIIVK LIWEGDKSCV LEFYSKVKRE TK // ID A0A078H989_BRANA Unreviewed; 308 AA. AC A0A078H989; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA02g28280D protein {ECO:0000313|EMBL:CDY34212.1}; GN Name=BnaA02g28280D {ECO:0000313|EMBL:CDY34212.1}; GN ORFNames=GSBRNA2T00056206001 {ECO:0000313|EMBL:CDY34212.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY34212.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY34212.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032330; CDY34212.1; -; Genomic_DNA. DR EnsemblPlants; CDY34212; CDY34212; GSBRNA2T00056206001. DR Gramene; CDY34212; CDY34212; GSBRNA2T00056206001. DR OMA; HEKPEAC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34833 MW; 3869A16529378179 CRC64; MMMDEAHDVE TKASALIAGV HHRPGFGSGS GHGHGLSASV PLLGVNWKRR RMPRQRRSSS SFNLLSFPTL PPSSSHVPTP LPARKIDTRR LRFLFQKELK NSDVSSLRRM ILPKKAAEAH LPALESKEGI PIKMEDLDGL HVWTFKYRYW PNNNSRMYVL ENTGDFVNAH GLQQGDFIMV YQNLYPNNYV IQARKASEEE NLTSFEEDDV YTDLTKIENT VVNDLLIQDY NHHYNSDNGK CSYYYPIIDD VTATATTASF VYDTTALTSN DTPLDFLGGL TMRTNNYYSK VGSFEGFGSV ENISLDDF // ID A0A078H9V1_BRANA Unreviewed; 661 AA. AC A0A078H9V1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC01g28340D {ECO:0000313|EMBL:CDY33603.1}; GN ORFNames=GSBRNA2T00054908001 {ECO:0000313|EMBL:CDY33603.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY33603.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY33603.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032318; CDY33603.1; -; Genomic_DNA. DR EnsemblPlants; CDY33603; CDY33603; GSBRNA2T00054908001. DR Gramene; CDY33603; CDY33603; GSBRNA2T00054908001. DR OMA; RTQELYH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 73455 MW; 47CD628E6528A380 CRC64; MAASNHPSGK PGGALSDALC RELWHACAGP LITLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRKAEPETDE VYAQITLLPE ADQSEPMSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRQNEELRVG VRRHMRQQTN IPSSVISSHS MHIGVLATAA HAITTGTIFS VFYKPRTSRS EFIVSVNRYL EAKNQKLAVG MRFKMRFEGE EAPEKRFSGT IVGVQENKSS VWHDSEWRSL KVQWDEPSSV FRPERVSPWE LEPLVANNTL SAHLPPQRNK RPRPPGLLSP TTAPSTPDGV WKSPADNPSS VPLFSPPAKT AAFGLGGNKS FGVSIGSAFW PTHADGAAES FASALNNESP TEKKQTNGNV CRLFGFELVE NMNVDECFSA ASVSGAVAVD QPVPSNEFDS GQQSESLNIN QANLPSGSGD HEKSSLRSPQ ESQSRQIRSC TKVHMQGSAV GRAVDLTRSE CYEDLFKKLE EMFDIKGELL ESTKKWQVVY TDDEDDMMMV GDDPWNEFCG MVRKIFIYTP EEVKKLSPKN KLTVNVRMQP KTDADENGNT EGRSSSMAGS R // ID A0A078HB03_BRANA Unreviewed; 345 AA. AC A0A078HB03; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC05g27060D protein {ECO:0000313|EMBL:CDY35575.1}; GN Name=BnaC05g27060D {ECO:0000313|EMBL:CDY35575.1}; GN ORFNames=GSBRNA2T00058893001 {ECO:0000313|EMBL:CDY35575.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY35575.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY35575.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032355; CDY35575.1; -; Genomic_DNA. DR EnsemblPlants; CDY35575; CDY35575; GSBRNA2T00058893001. DR Gramene; CDY35575; CDY35575; GSBRNA2T00058893001. DR OMA; YFTDKAS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR017392; AP2/ERF-transcript_factor. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR PIRSF; PIRSF038123; PTI6; 2. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 97 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 97 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 39180 MW; AD01168F573561AF CRC64; MDSLKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVEQQNG HWGAQIYADH KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITVHEPDFQK SHTTEAVLNM IRDSSYSQKF GDYLIVRSQM VAIANVNIVG SKQSRGGGEE STKCFSCTEL FHKELTPSDV GKLNRLVIPK KHAVKHLPFI SDDQNEGETG GAAEDVEVVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNGF VKEKNLKEKD VIVFYTCDVP SNFKTLEGQS NKFLMIDVDY FTDKASVEPK EVNKMVHNVS EREMKTENFF GTKVEEETKS EVSKGGFMLF GVRIQ // ID A0A078HB86_BRANA Unreviewed; 406 AA. AC A0A078HB86; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA09g41260D protein {ECO:0000313|EMBL:CDY34759.1}; GN Name=BnaA09g41260D {ECO:0000313|EMBL:CDY34759.1}; GN ORFNames=GSBRNA2T00057299001 {ECO:0000313|EMBL:CDY34759.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY34759.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY34759.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032341; CDY34759.1; -; Genomic_DNA. DR RefSeq; XP_013664049.1; XM_013808595.1. DR EnsemblPlants; CDY34759; CDY34759; GSBRNA2T00057299001. DR GeneID; 106368598; -. DR Gramene; CDY34759; CDY34759; GSBRNA2T00057299001. DR KEGG; bna:106368598; -. DR OMA; WERSWAM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 58 154 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 308 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 58 154 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 308 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 45320 MW; CDCE0B947514795A CRC64; MVLDLSDLEP VGCRQTRDLP APSCNNGQDE TELERNKKVK KNNPETEVDS SISSDHSSFV ALVTASNLHK DALDLPKEFT SSNLLEKECR RIVLRDRWER SWAMDLAFNK SSDTFYIRQG WRSFCDENGK KAGSFFVFKL VGNRETPLLS LCSTESTSNT GSCVEHSTTP PIKSRLMTLT IEHASFRKGS LHLPLRFMKK HGLDKPRLIT LLDKDGTKWV ANLRRESSGG RMRLGKGWKD FALANGLKVG DSFTFELVGK NNTPPMLSLI RTESTSDTRQ PSSGNKTREG KKTIEERRDS SSAIKNQVVT LTLTPDDVRA CQLILPSQFM KANGIYKLGK ITLLGKNGTR WLAFLLSKDG LLALGCGWKD FCEANGVKTG ESFTLECICE DNDTTHVFKF CSNSGE // ID A0A078HD71_BRANA Unreviewed; 513 AA. AC A0A078HD71; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA09g41250D protein {ECO:0000313|EMBL:CDY34758.1}; GN Name=BnaA09g41250D {ECO:0000313|EMBL:CDY34758.1}; GN ORFNames=GSBRNA2T00057298001 {ECO:0000313|EMBL:CDY34758.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY34758.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY34758.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032341; CDY34758.1; -; Genomic_DNA. DR RefSeq; XP_013664047.1; XM_013808593.1. DR EnsemblPlants; CDY34758; CDY34758; GSBRNA2T00057298001. DR GeneID; 106368597; -. DR Gramene; CDY34758; CDY34758; GSBRNA2T00057298001. DR KEGG; bna:106368597; -. DR OMA; YHAHETP; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 264 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 416 512 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 264 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 416 512 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 513 AA; 58939 MW; C884523FBD65011E CRC64; MALCSPTNPH FFQPLLPGFT KHLDIPVAFF LKHLDKSNKG KTAKLRSDTS ETTWNVKLDG RRFSDGWEYF AVAHDLRVGD IVVFRHEGEL AFHVTALGPS CCEIQYGEDS QEEDKSEELC DAMEEISRKK KRPKTEIDFS KDQSCFVITV TPSNLRRDTV YLPKAFAVVN CLMKKFEIVL VNEERESWKL NLRQDSYLGR FYMSNGWRSF CVANGKKPGD MFTFKMLQNE TTPVLKLLPW NNEDLHNPEK VPKKKHQEIE ADSSFVAIVT ASNIRRDTMY LPKTFAASNG LKSKFKIDLM NEKGESWTID LRHEPYSGRF LIRSGWRSFC AANGKKPGDM FNFKLIRNVE TPVLKLFPLN LPKLEPSEDT RQGLEATERE FLGVETNRDD SRQEAIRKGK WLEANETTIK EENISTSENR FVTLTLTTSK LNLPLEFTKG NGIKNTEKIK MIDRYGTTWS TSLLMNKKKR GEMKLGKGCK GFCEVNGVRM GDSFVLELVW EDTVPVLKFC YKC // ID A0A078HE75_BRANA Unreviewed; 80 AA. AC A0A078HE75; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=BnaA06g11180D protein {ECO:0000313|EMBL:CDY35108.1}; GN Name=BnaA06g11180D {ECO:0000313|EMBL:CDY35108.1}; GN ORFNames=GSBRNA2T00057987001 {ECO:0000313|EMBL:CDY35108.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY35108.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY35108.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032346; CDY35108.1; -; Genomic_DNA. DR EnsemblPlants; CDY35108; CDY35108; GSBRNA2T00057987001. DR Gramene; CDY35108; CDY35108; GSBRNA2T00057987001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 47 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 47 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 80 AA; 9233 MW; D045A540BA9937E9 CRC64; MKKRGETVFL TVGWENFVKD NELEDGKMME FIYDCDRTFY VVIFGHGGVS ELRVFPQAVV DVGDYATGEE EEEEEKNKSN // ID A0A078HEH3_BRANA Unreviewed; 228 AA. AC A0A078HEH3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC04g37070D protein {ECO:0000313|EMBL:CDY36187.1}; GN Name=BnaC04g37070D {ECO:0000313|EMBL:CDY36187.1}; GN ORFNames=GSBRNA2T00060058001 {ECO:0000313|EMBL:CDY36187.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY36187.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY36187.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032368; CDY36187.1; -; Genomic_DNA. DR EnsemblPlants; CDY36187; CDY36187; GSBRNA2T00060058001. DR Gramene; CDY36187; CDY36187; GSBRNA2T00060058001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 26403 MW; 97FA59E8FE47B07A CRC64; MEDIAMKKRT KRNLCNTEKV SRKKKSPKAE TDPSTDQSFF MTTVTASNLK RDIVYLPKTF AMSNGLLKRF EIVLMNEEGE SWKIGLTYES CRGRSNRFYM NRGWRSFCVA NKKKPEDMFK FKLVQNEETP VIHLLPLNSE YLHKVEPSDE CDTRQGLEAT EKEFLGVETN RNDTSQSKEA IKIRTRSKAT IKEENITTSQ NRFVTLTATP TAHSTQFPLW ARSMKPEI // ID A0A078HEV3_BRANA Unreviewed; 554 AA. AC A0A078HEV3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA06g17250D {ECO:0000313|EMBL:CDY36940.1}; GN ORFNames=GSBRNA2T00063085001 {ECO:0000313|EMBL:CDY36940.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY36940.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY36940.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032387; CDY36940.1; -; Genomic_DNA. DR EnsemblPlants; CDY36940; CDY36940; GSBRNA2T00063085001. DR Gramene; CDY36940; CDY36940; GSBRNA2T00063085001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 443 523 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 554 AA; 62691 MW; AD55871F6CAD5F74 CRC64; MASDQIMHVQ PEFLATGGTN NYLYDQLWKL CAGPLFDPPK IGEELVASIN DELCQLKPVF NIPSKIRCNV FSIKLKVETT TDEIYAEISL LPDTSEVEIP TSKCENNIQN IKCFTKVLSA SDTSKKGGFV LNKRHAIECL PPLDMSHLTP SQEINATDIH GHEWKFKHAL KGTPKRHLFT SGWNEFAKAK KLVVGDSFIF LRGENGESRV GIKKAAHHQQ ENIPSSIISK ESMHHGVVAT ALNAIKNKCM FVVFYKPRSS QFVVNIDKFR DGVNKKFSIG SRFLMKFEGK DFNEIRDFST HWKDSEWRCL EVQWDEAATI PRPDKVSPWE IEPLTHSSDI LKSGSNMWVP TLTQGQEVGH SSIQSSMSYS FATTMSKPNY NEQMVQAMKE TSTTTATTSY RLFGVDLKVP AKTKDSIEPI NSYKKSKISK IFEEEKVDHI QTRSHTKVRM EGAMERTVDL SIFDGYNQLI DELERLFDIK GKLHIHNQWK IVFINADGDI MLLGDDPWPK FCNTAKEIFI CSKNDAKIGD ADNKFSEGDP ILTTTNLPPD VNNN // ID A0A078HFC4_BRANA Unreviewed; 350 AA. AC A0A078HFC4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA08g19490D protein {ECO:0000313|EMBL:CDY36099.1}; GN Name=BnaA08g19490D {ECO:0000313|EMBL:CDY36099.1}; GN ORFNames=GSBRNA2T00059936001 {ECO:0000313|EMBL:CDY36099.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY36099.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY36099.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032367; CDY36099.1; -; Genomic_DNA. DR EnsemblPlants; CDY36099; CDY36099; GSBRNA2T00059936001. DR Gramene; CDY36099; CDY36099; GSBRNA2T00059936001. DR OMA; MERNKAT; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39408 MW; A28B9955BFB2C702 CRC64; MDYSCLDDNT SNTSETLSMS KKTPSPPLPL PPAMRLYRMG SGGSSVVLDL ENGVETESSR KLPSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AASYDIAARR FRGRDAVTNF KSPASDAESA FLEAHSKAEV VDMLRKHTYA DELRQSERKK RCEFSKTTVT NENDGVSREV LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL PVTVTPSPTK GVLINLEDRT GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLRAGDVVCF ERSSGPDRQL YIDWKVRSGI EKITPVQNVV RLFGVNIFNA TTTNANTNDV VGESGSKKRF REVDLFALGC SKKQAIINVL // ID A0A078HFG3_BRANA Unreviewed; 339 AA. AC A0A078HFG3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC06g03690D protein {ECO:0000313|EMBL:CDY37130.1}; GN Name=BnaC06g03690D {ECO:0000313|EMBL:CDY37130.1}; GN ORFNames=GSBRNA2T00063364001 {ECO:0000313|EMBL:CDY37130.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY37130.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY37130.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032392; CDY37130.1; -; Genomic_DNA. DR EnsemblPlants; CDY37130; CDY37130; GSBRNA2T00063364001. DR Gramene; CDY37130; CDY37130; GSBRNA2T00063364001. DR OMA; HEPDFQE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 108 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 108 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39275 MW; A618AD92CF3BF110 CRC64; MFLVSSAIPM DVAKSETLNT NDSYLPVKKR MRLNEPPTTD KALVSASDNT KYKGVVQHQN GHWGAQIYVD HKRIWLGTFK SAAEAAMSYD SASIKLRTFD ANSQRNFPWS DLTVHEPVFQ KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ IVSKQNRRDE ESNKQFSCTQ LFQKELTASD VGKLNRLVIP KKYAVKYLPF ISEREEGEIV EDVEVVFYDR EMRQWKFRYC YWSSSQSFVL TRGWIGFVKE KRLKEKDVIT FYTCDVPTLE GQSKKFLMID VHYFSDNDSA VTDEEVNKTV HNSFDDVMKP EINSKLGGEE EAKPEEIKGG FMLFGVRIQ // ID A0A078HID1_BRANA Unreviewed; 333 AA. AC A0A078HID1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC06g03900D protein {ECO:0000313|EMBL:CDY37109.1}; GN Name=BnaC06g03900D {ECO:0000313|EMBL:CDY37109.1}; GN ORFNames=GSBRNA2T00063330001 {ECO:0000313|EMBL:CDY37109.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY37109.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY37109.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032392; CDY37109.1; -; Genomic_DNA. DR EnsemblPlants; CDY37109; CDY37109; GSBRNA2T00063330001. DR Gramene; CDY37109; CDY37109; GSBRNA2T00063330001. DR OMA; NEHTTED; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 102 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 102 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 38063 MW; 4FC813687965B7F7 CRC64; MNTEDAKTET PTVSSGCFLP LKKRVKLLNN PPNSALEVVV SGDAKYKGVV QQPTGHWGAQ IYADHKRIWL GTFRSAAEAA AAYDSASIKI RSYDANMHRN FPWSEYTVHE PAFQNEHTTE DVLSMIKDGT YQRKYREFFK KVQSKIVGGY NMVGSKEDQE SKKCFSCTEL FRKELTPSDV GKLNRLVIPK KYAVRYLPLL RDDRKERGEG EIGEDVEVVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNGF VKEKSLKEKD VIVFYTCDVP TLEGQSKKFL MIDVQCSSDE GSAVCDEEVN ETVHNSSEGG VKTEETKSVE NKGGFMLFGV RIQ // ID A0A078HJ49_BRANA Unreviewed; 305 AA. AC A0A078HJ49; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA10g16730D protein {ECO:0000313|EMBL:CDY38485.1}; GN Name=BnaA10g16730D {ECO:0000313|EMBL:CDY38485.1}; GN ORFNames=GSBRNA2T00065932001 {ECO:0000313|EMBL:CDY38485.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY38485.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY38485.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032424; CDY38485.1; -; Genomic_DNA. DR EnsemblPlants; CDY38485; CDY38485; GSBRNA2T00065932001. DR Gramene; CDY38485; CDY38485; GSBRNA2T00065932001. DR OMA; QINCLEM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 35006 MW; 216C68F48A25856C CRC64; MATNSCIGML MDESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVLKLPWG SSWRINLSKY QSFFYYMEKD GWDQFLSDNG LGADELLTFT HKGNMCFNVS IYQINCLEML RPNRSATIAS SSSRNKREEV SNGKEEERES LSASNYPVSE TAESTVGGRL KQKRQLINLG KKQVKKAEKA NKCKKRKMDT ESDDSEDGTS SLAPEFTLTI KKSYVLFLGV PKRFGEMHMP KEETVFKIHD RKGKKSWEVT YVVSKIQSRF SRGWPRLVKD FGLEIGDFCT FELIKPTEMI LTVSK // ID A0A078HJT3_BRANA Unreviewed; 343 AA. AC A0A078HJT3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC06g03910D protein {ECO:0000313|EMBL:CDY37108.1}; GN Name=BnaC06g03910D {ECO:0000313|EMBL:CDY37108.1}; GN ORFNames=GSBRNA2T00063329001 {ECO:0000313|EMBL:CDY37108.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY37108.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY37108.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032392; CDY37108.1; -; Genomic_DNA. DR EnsemblPlants; CDY37108; CDY37108; GSBRNA2T00063329001. DR Gramene; CDY37108; CDY37108; GSBRNA2T00063329001. DR OMA; MAFDSAS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 180 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 180 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39571 MW; 36DD92DF52B22092 CRC64; MFLLSSVIPM DIAKSKASNT SDSYLPPKKR MRLSEPPTET TLVSAAIKKG SFSDNIKYKG VVQQPNSRWG AQIYVDHKRI WLGTFSSAAE AAMAFDSASI KLRSFDTISE RNFPWSDLTV QEPVFQNGYT TEAVLNMIKD GSYQREFIDF LKNRSQVVVG LKQNRRDEEP SKCFSSRQLF QKELTASDVG KLNRLVIPKK YAVKYLPFIS EREEGEIVED VEVVFYDREM RRWTFTYCYW TSSKSFVFTR GWIGFVREKS LKEKDVITLY TCDVPTLEGQ SKKFSMIDIH RFSDNDSVAT DEEVNKTVHD ISDDVMKPEK FFNSKFGEEE NRGGFMLFGV RIQ // ID A0A078HK54_BRANA Unreviewed; 594 AA. AC A0A078HK54; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA04g19890D {ECO:0000313|EMBL:CDY37679.1}; GN ORFNames=GSBRNA2T00064571001 {ECO:0000313|EMBL:CDY37679.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY37679.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY37679.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032406; CDY37679.1; -; Genomic_DNA. DR EnsemblPlants; CDY37679; CDY37679; GSBRNA2T00064571001. DR Gramene; CDY37679; CDY37679; GSBRNA2T00064571001. DR OMA; IVDYPFC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 594 AA; 65578 MW; FA78989030203CBD CRC64; MGGLIDLNVT EEEDETLSSA SGSLSPSNSS SSAFVANGSS SSSSSSSGVC LELWHACAGP LISLPKRGSL VLYFPQGHLE QQAPGFSAAI YGLPPHVFCR ILDVKLHAET DTDEVYAQVS LLPESEDIER KVREGVDGGD QEDYEVLKRT NTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSKP RPSQELLARD LHGLEWRFRH IYRGQPRRHL LTTGWSGFVN KKKLVSGDAV LFLRGDDGKL RLGVRRASQF EGASAFSTQY NQNTNHNNFS EVAHAISTNS AFNIYYNPKA SWSNFIVPAK KFLKIVDYPF CIGMRFKARV ESEDASERRS LGIITGISDL DPIRWPGSKW RCLIVRWDDN EANRHQQRVS PWEIEPSGSI SSSSSFITAG PKRSRIGFPD IPVSEGIHAT DFEESLRFQR VLQGQEKFQG FINTSSDGGA GARRGRFKGT EFGDSYGFHK VLQGQETVPV YSMTAHQQHG LSQRNIWCGP FQNFSSRVLP PSSSPSSVLL TNSNGLNGGL EEHHGGSGSR CRLFGFPLRD ESTAMVVPCV EGQKGVSDVQ SNHHHHSQGR DMYGMRDMLL DIAL // ID A0A078HNX1_BRANA Unreviewed; 683 AA. AC A0A078HNX1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA07g09400D protein {ECO:0000313|EMBL:CDY40260.1}; GN Name=BnaA07g09400D {ECO:0000313|EMBL:CDY40260.1}; GN ORFNames=GSBRNA2T00069416001 {ECO:0000313|EMBL:CDY40260.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY40260.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY40260.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032467; CDY40260.1; -; Genomic_DNA. DR EnsemblPlants; CDY40260; CDY40260; GSBRNA2T00069416001. DR Gramene; CDY40260; CDY40260; GSBRNA2T00069416001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 163 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 309 402 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 430 527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 544 640 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 163 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 309 402 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 430 527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 544 640 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 683 AA; 76626 MW; 21C1A7AB43ADF72D CRC64; MVDQSLLPAS SSRLPHSPRI LLSFSFISSQ EKNNIPVAFF STHIKGRNDH IKIAKLRTDA SDKTWKVKMD GSKFTDGWED FAVAHDLRVG DITVFRHEGE MVFHVTALGP SFCEIQYTSS HNINDDTHDQ TNNIVTGNSS REKRKRVKKN PKPVPQASLH SSCYVGSVSA SSLKHNKLYL GREFVTSNGL NKGCSEIVLK NEGGGRWTLP LKHYKSINHT YLGPGWTTFC QVNGIKAEDA FMFKLVRTGE KPVLCLCPEE SSHRDKTPVE CLEDSDDVNP LSSSSKSKES KEESLGDKRA SSSYSEDRFL TLTLTQKAVK RYQLTIPVAF FLKHVQGRND HIKIAKLTTA ASDKTWTVKM DGLKLTHGWE DFAVAHDLRV GDMIVFRHEG ELAFHVTTMG PSCCEIQYTH NINHNHTNNI IESSSSDNSL FVAKVSASNL RLDRLYLPMS FARTNGLDKM SGEEIILLNG EGRSWSLKLK HDKSDMHTFV RPGWRRFCAE NGMSHGHYTL KLVRNSGPPV IKLCGQVHNR PKPVPVVSSL HHSCFVGSVT SNSLKTDKLY LGKKFVIENG LDRGCSEMVL KNEWGGRWSL ALRFYESAYQ TYLGPGWRTF CQVNEIKVGD SFRFKLVGTG DNPVLLLCTR KTPLECPEES SGSDTSSGDD SSEPQESEEE KFLEMQNTKR KPL // ID A0A078HP16_BRANA Unreviewed; 416 AA. AC A0A078HP16; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC03g26790D protein {ECO:0000313|EMBL:CDY38518.1}; GN Name=BnaC03g26790D {ECO:0000313|EMBL:CDY38518.1}; GN ORFNames=GSBRNA2T00066154001 {ECO:0000313|EMBL:CDY38518.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY38518.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY38518.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032425; CDY38518.1; -; Genomic_DNA. DR RefSeq; XP_013683880.1; XM_013828426.1. DR RefSeq; XP_013683882.1; XM_013828428.1. DR EnsemblPlants; CDY38518; CDY38518; GSBRNA2T00066154001. DR GeneID; 106388378; -. DR Gramene; CDY38518; CDY38518; GSBRNA2T00066154001. DR KEGG; bna:106388378; -. DR OMA; NTEEMIN; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 294 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 294 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 416 AA; 46441 MW; 91C841B41D3FA582 CRC64; MLSGSGSTSC DIHTNNEDQE NMGYISRKKH PITEEVDDGQ DNTGNKKVKK NNSEAEADSS SSDSSCFVAP VTASNLEEDS LCLPPDFTIS NGFKRKCRKI VLTDERERSW ALDLRFNKSS DTFCITRGWR NFCEENGRKE GSLFKFKLIM RNGETPLLSV CPTESISDGT QGVDENIPQI CRDSTLPNPN RFVTLTLTND SLKSSRLYLP LPFLKENGMD KPGMVTLLGK DGTRMLANLL RENSGRMSLG KGLKDFARAN GLNMGESFTL ELIWENATPV LSLLSTEFRS QNRFVTLTLT QDSFKNSRLG LPLPFMRENG MNEPGTIALL GKDGTKWMTN LLRESQGRMS LGKGWKDFAR ANGLEIGESF TLESIWEDAT PMLSLSSRES KREKVYVSTE PSIGNETKKD ENNIED // ID A0A078HPD8_BRANA Unreviewed; 779 AA. AC A0A078HPD8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC06g27170D {ECO:0000313|EMBL:CDY39274.1}; GN ORFNames=GSBRNA2T00067506001 {ECO:0000313|EMBL:CDY39274.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY39274.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY39274.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032444; CDY39274.1; -; Genomic_DNA. DR EnsemblPlants; CDY39274; CDY39274; GSBRNA2T00067506001. DR Gramene; CDY39274; CDY39274; GSBRNA2T00067506001. DR OMA; VVEHTNN; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 675 759 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 779 AA; 87279 MW; 74EF6403C13C5DF6 CRC64; MNLSSSGFGH QSHEGKKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ PLTQEEQKDT FVPIELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT TFPMYPSLFP LRLKRPWHPG ASSFQDSRGD LTWLRGGAGE NGLLPLNYPS PNVFPWMQQR LDLLGTDQNQ QYQAMLAAGL QNFGGGGGDP LRQQFVHLQE PNHQYLQQQS APIIHNSDLQ QHHQQQQMPR HLLQSQTQIL TENLPQQNMR QEVSSQAQQP DRVWQHSDLL SPSDFTNKFT SAATNPVQQQ NLTLQGSGDS SSHLLNFSIT GQSEQLPTQD WSLKHTHHPE TNYFSEPLSL GQAYGRASPS SLEPPPSTQN LSLFGVDSDS GLFLPTTVPR FAADTSSMPL TDSGFQNTLQ ETTELAAHGV VEHTNNFVKV YKSGSVGRSL DISRFSSYNE LREELGKMFD IKGLLEDAFR SGWQLVFVDK EDDILLLGDD PWESFVNSVW YIKILSPDDV HKMGEHGEGS SFPQNLTHF // ID A0A078HR47_BRANA Unreviewed; 1058 AA. AC A0A078HR47; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC05g14880D {ECO:0000313|EMBL:CDY41030.1}; GN ORFNames=GSBRNA2T00072327001 {ECO:0000313|EMBL:CDY41030.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY41030.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY41030.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032488; CDY41030.1; -; Genomic_DNA. DR EnsemblPlants; CDY41030; CDY41030; GSBRNA2T00072327001. DR Gramene; CDY41030; CDY41030; GSBRNA2T00072327001. DR OMA; QGLWNSQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 930 1015 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1058 AA; 117202 MW; D317EC5918508528 CRC64; MKAPSNGFHP NPTEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKINR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA GAAAATTHLP SSYNLPNNFA PNDHSKLLNF QSPNLSPANT QFNKPNMVSH ISQQMQAQPA MVQSQQQQQQ QQQQQLQQQV QMSHQQLQQQ HHQHQQQGGY NSGSVNNGVS VVSNQVSCQN QSAGFTQSQL QQQSMLSNGA KMTHQNMVSA GNKGSSQMTA QELQFQQQLE LHNSTQLLRN QQEQSSMHSL QQNPQQLQMQ QQQSSKPSPS QQLQLQLLQK LQQQQQLTPP PVSSSSQPQL SSLQQTQSHQ LQQLLSSQNQ QPLPQSNNNS FMQPPQIQAS HHQQQGYMNN NKPIVRSQSG HIDGEAPSCS TSPSANNTGH GNVSPTNFLS RNQQQGQGVS VPASDPVQQG MVNLKSAGEQ FKFKAAVTDQ IGVTTAGTTY CPDVVVGPGQ QQQQTFPLPS FGFDGDLQQS QHPRNSLAFA GNIEAVNPDA LYSQKDFQNL VVPNYGNAPR DIETELSSAS QSFGIPSIPF KSGGSNEIGG INDSGIMNGG IWPNQAQRMR TYTKVQKRGS VGRSIDVTRY SGYEELRNDL ARMFGIEGQL EDPQISDWKL VYTDHENDIL LVGDDPWEEF VNCVQNVKIL SSAEVQQMSL DGDLAAIPTT NQACSETDSG NAWKVHYEDT SAAASFNR // ID A0A078HRD8_BRANA Unreviewed; 730 AA. AC A0A078HRD8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC03g67480D protein {ECO:0000313|EMBL:CDY39869.1}; GN Name=BnaC03g67480D {ECO:0000313|EMBL:CDY39869.1}; GN ORFNames=GSBRNA2T00068700001 {ECO:0000313|EMBL:CDY39869.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY39869.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY39869.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032459; CDY39869.1; -; Genomic_DNA. DR EnsemblPlants; CDY39869; CDY39869; GSBRNA2T00068700001. DR Gramene; CDY39869; CDY39869; GSBRNA2T00068700001. DR OMA; FFCEAND; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 387 462 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 505 599 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 705 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 387 462 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 505 599 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 609 705 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 730 AA; 83501 MW; 8968417644B98733 CRC64; MVNPPLQSPT NPHFFQPLLP GFHTHLTIPV VFFSKHIHGK TKKKTVKLRS DASDKTWEVK IDGRRLTRGW KDFTTAHDLR IGDIIIFKHE GDMVFNVTPF GPSCCEIQYT RSHIIKEEAD TDDDDEDDNE RQYKIRNGLK PKTEPRSSFS FDHCFVSEVT TSNLKLDTLY LPVGATSSNA LNKRCHEMIL VNKEGNSWTA SLKLRESGGM YYIRRGWRRF CLDNRRKVGD LFVFNLVGDG KTTPMMCVCP EEDCSELMSK HLSRGRRSRK TKKRSKWVAS SSSRRNRFLT ITLTRYNFIS SKLILPIAFT NTNGLSNYKE IILMDKHGVK RLTKLVQDGP HNNRKGLGKG WKFFCEANDV FKIGESFVLE LVWEDTVPVL KFCSKNIPVA FFSKHVQGRH GDKTARLRSD ASDTTWEVVI TGRRLTGGWK EFVKAHDLRV GDVLVFRHEG ELVFHVTALG SSCCEVEYTT LDDGDDNKET VLPSDIKPMK KRAKKNPRKK DFCSCFVANV TVSSLHEDKV YIPVSFVRPN GLSNTYCKIV LLNEMGRSWK LSLVHDKSGS YLRQGWRSFC SANAINGGRY TFKLVQNSET PVIRLYQAEH RHEDNTHSYL VGTLTPSSLR NDTLYLSRRF VNSNGLKEKC CEMILKNDNG GTWCLVLRRN ETNETTVISR GWRSFCHANG LKVRDPFRFK LAGTREKPVL QFCPSESNRN TRHVDCSEEA STMASTKQGR // ID A0A078HRG6_BRANA Unreviewed; 879 AA. AC A0A078HRG6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC05g15390D {ECO:0000313|EMBL:CDY39348.1}; GN ORFNames=GSBRNA2T00067779001 {ECO:0000313|EMBL:CDY39348.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY39348.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY39348.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032446; CDY39348.1; -; Genomic_DNA. DR EnsemblPlants; CDY39348; CDY39348; GSBRNA2T00067779001. DR Gramene; CDY39348; CDY39348; GSBRNA2T00067779001. DR OMA; SSWKLVY; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 769 853 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 879 AA; 97130 MW; 1B652A40D10610A9 CRC64; MMASLACVEE KMKTNGLVNG GTTTTSQSTL LEEMKLLKDQ SGTRKPVINS ELWHACAGPL VCLPQVGSLV YYFSQGHSEQ VAVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE IYAQMSLQPV HSEKDVFPVP DFGLLSRSKH PAEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTAQP PTQELVVRDL HENTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL FIRDEKSQLM VGVRRANRQQ TALPSSVLSA DSMHIGVLAA AAHATANCTP FLIFYNPRAC PAEFVIPLAK YRKAICGSQL SVGMRFGMMF ETEDSGKRRY MGTIVGISDM DPLRWSGSKW RNLQVEWDEP GCNDKPNRVS PWDIETPESL FIFPSLTSGL KRQLHPSYFA GETEWGSLIK RPLIRDSTNG ILPYASFPNM ASEQLMRMMM RPHNNNNNNQ NASSFMSEMQ QNVLMGHGGL LGDMNMQQQP MVSEMVRPES KLTVNPSASN TSGQEQNLSQ SMSAPPKPEK PTLSGCSSVR VNHGNEQKSV EQASQVRAVA VCNESALSPL QADPSPDTSQ QIYPPQSNGF SFLESEELTS QVSSFQSLAG SYKQPPMLTS QDSSAVVLPD STNSPLFHDV WDNQLKFDQF SPLMNQDLYG CQDSTTSNIL DPPPLSNTVL DDFCAIKEAD FQNHHPSDCL VGNSNTSFAQ DVSQITSASF ADSKAISRQD NSGGTTGTSS SNVDFDDNSL LQQNSKGSWQ KLAATPRVRT YTKVQKTGSV GRSIDVTSFR DYRELKTAIE CMFGLEALLT RPQSSGWKLV YVDYESDVLL VGDDPWEEFV GCVRCIKILS PTEVEHMSEE GMKLLNSACI NDLKSSVSK // ID A0A078HSG0_BRANA Unreviewed; 211 AA. AC A0A078HSG0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA03g53170D protein {ECO:0000313|EMBL:CDY40646.1}; GN Name=BnaA03g53170D {ECO:0000313|EMBL:CDY40646.1}; GN ORFNames=GSBRNA2T00071510001 {ECO:0000313|EMBL:CDY40646.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY40646.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY40646.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032476; CDY40646.1; -; Genomic_DNA. DR EnsemblPlants; CDY40646; CDY40646; GSBRNA2T00071510001. DR Gramene; CDY40646; CDY40646; GSBRNA2T00071510001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 211 AA; 23344 MW; 475032FDE29E73E1 CRC64; MSESDEDVVD LPRFFKVFLP ETASESMAIP KSFNEHLQDP LPHETAKLQG IGGGVWTVSF KKIRGGAYFT SGWSKFAEDH ELKHGEFLTF VYDGSHTFEV SVFGRSELVA ADSNEGDDPS FHAGEDDEVS QSINPVDSDD TVSVAEGFPN LEVESNPCFT TILKKRIYDL LIPADVVKEH GLTFCDRIKY IDGEGILDGK VHSIKITIIR G // ID A0A078HT50_BRANA Unreviewed; 550 AA. AC A0A078HT50; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA09g15480D {ECO:0000313|EMBL:CDY41720.1}; GN ORFNames=GSBRNA2T00073434001 {ECO:0000313|EMBL:CDY41720.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY41720.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY41720.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032504; CDY41720.1; -; Genomic_DNA. DR RefSeq; XP_013730059.1; XM_013874605.1. DR EnsemblPlants; CDY41720; CDY41720; GSBRNA2T00073434001. DR GeneID; 106433778; -. DR Gramene; CDY41720; CDY41720; GSBRNA2T00073434001. DR KEGG; bna:106433778; -. DR KO; K14486; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 439 529 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 550 AA; 62495 MW; CE95B9FB6DF45154 CRC64; MAGDQIMHAQ PEVLAIGETN NYLNDKLWKL CAGPLFDTPK IGEKLVASMD DELCQLKPIF DIPSKICCNV FSINLKVEPS TNEIYAEVSL LPDTSDVEIP IPKNENNIQN INYFTKVLSA SDTSTNGGFV LYKRHAIECL PLLDMSQLTP SQEIIAKDIH GHEWSFKHTS RGTPKRHLFT SGWNEFAKGK KLVAGDSFVF LRGENGESRV GISKAAHQQR NIPTSLISKE SMHHSVVATA LNAIENKCMF VVFYKPRSSQ FIVNFDKFVD RVNNKFSIGS KFSMKFEGKD LNEIRYNGTV VGVRDFSTHW KDSEWRSLEV QWDEAATIPR PDKVSPWEIE LLLTHSSNIF KSDALKHKRQ LEVHEFGSKM WAPTIYNEQM VQAMKEPSTT TATTSCRLFG VDLMVPAITK DPVEPIVSNK KCKISKIFED EKVDHVQAKS RTKVHMEGVI ERTVDLTIFD GYNQLIDELE RLFDIKGELH MHNKWKMFFI YNDGDMMILG DDPWPKFCNM AKEIFICSKE DVKIGIADNR FSEGDPTLTT TILPPDVNNT // ID A0A078HTJ2_BRANA Unreviewed; 159 AA. AC A0A078HTJ2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=BnaC05g12720D protein {ECO:0000313|EMBL:CDY40043.1}; GN Name=BnaC05g12720D {ECO:0000313|EMBL:CDY40043.1}; GN ORFNames=GSBRNA2T00068946001 {ECO:0000313|EMBL:CDY40043.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY40043.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY40043.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032462; CDY40043.1; -; Genomic_DNA. DR EnsemblPlants; CDY40043; CDY40043; GSBRNA2T00068946001. DR Gramene; CDY40043; CDY40043; GSBRNA2T00068946001. DR OMA; FISHKSA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 159 AA; 18219 MW; 9A6E9CBF4CFD6964 CRC64; MAAPDEDQRF IKPFISHKSA KSLSLVLCVA AIIVCSERLI LYVKAIPLAF NEYFPDPLPN TVELLDYYGR SWTIRMKKRG ETVFLTVGWE NFVKDNELED GKMMEFIYDC DRTFYVVIFG HGGVSELRVF PQAVVDVGDY ATGEEEGEEE EEEEKNKSN // ID A0A078HW04_BRANA Unreviewed; 315 AA. AC A0A078HW04; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA02g27630D protein {ECO:0000313|EMBL:CDY40973.1}; GN Name=BnaA02g27630D {ECO:0000313|EMBL:CDY40973.1}; GN ORFNames=GSBRNA2T00072242001 {ECO:0000313|EMBL:CDY40973.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY40973.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY40973.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032487; CDY40973.1; -; Genomic_DNA. DR EnsemblPlants; CDY40973; CDY40973; GSBRNA2T00072242001. DR Gramene; CDY40973; CDY40973; GSBRNA2T00072242001. DR OMA; NTNIATF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 184 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 184 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 35390 MW; A8761382E0A31ABF CRC64; MEAVSSVDES STSTVSIHTS AKIIPPPTTA KLSSPASLYR MGSGSSVVLD SENGVEAESR KLPSSKFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA ARVYDVAAHR FRGPDAVTNF KPDATFRNGD GEEVEFLNAH SKYEIVDMLR KHTYKEELEQ RKRKQTAFAN VTVATGFKTA ECLFEKTVTP SDVGKLNRLV IPKHQAEKHF PLPLTGDVSV RGTLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNGQDQQ LYIGWKSGLE QDTGRVVVRL FGVDIASIKS RKTMS // ID A0A078HW23_BRANA Unreviewed; 297 AA. AC A0A078HW23; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC04g00580D protein {ECO:0000313|EMBL:CDY41564.1}; GN Name=BnaC04g00580D {ECO:0000313|EMBL:CDY41564.1}; GN ORFNames=GSBRNA2T00073199001 {ECO:0000313|EMBL:CDY41564.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY41564.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY41564.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032500; CDY41564.1; -; Genomic_DNA. DR EnsemblPlants; CDY41564; CDY41564; GSBRNA2T00073199001. DR Gramene; CDY41564; CDY41564; GSBRNA2T00073199001. DR OMA; HQVVEKE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 3 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 297 AA; 33882 MW; 4C9D696DB14AC1E6 CRC64; MMMTNLSLTR EGEEEEEEEQ EEAKKPMEEV EREHMFDKVV TPSDVGKLNR LVIPKQYAER YFPLDSSTNE KGLLLNFEDL TGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRCVGDSGR DSRLFIDWRR RLKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP RHHHHSGYNY PQIPREFGYG YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ // ID A0A078HX73_BRANA Unreviewed; 163 AA. AC A0A078HX73; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 12-APR-2017, entry version 16. DE SubName: Full=BnaA03g12070D protein {ECO:0000313|EMBL:CDY43060.1}; GN Name=BnaA03g12070D {ECO:0000313|EMBL:CDY43060.1}; GN ORFNames=GSBRNA2T00075893001 {ECO:0000313|EMBL:CDY43060.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY43060.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY43060.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032543; CDY43060.1; -; Genomic_DNA. DR EnsemblPlants; CDY43060; CDY43060; GSBRNA2T00075893001. DR Gramene; CDY43060; CDY43060; GSBRNA2T00075893001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 92 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 163 AA; 19259 MW; 82C0BE717C7E960F CRC64; MFDKVLTQSD FGKLNRLVIP KQHAENYFPL EDNQTGTVLD FEDRTGKISQ SYVMTKGWCR FVKEMKLESG DIVSFHRGYV PDDNEPEKRK NIFFIDWRPR ANTSLVHNIN YHHYPLLGSI IVPALEYELK NYKYSLYINL SKFKHTIFSQ THMFCNTHAS PYI // ID A0A078I1R3_BRANA Unreviewed; 243 AA. AC A0A078I1R3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaAnng07660D protein {ECO:0000313|EMBL:CDY43751.1}; GN Name=BnaAnng07660D {ECO:0000313|EMBL:CDY43751.1}; GN ORFNames=GSBRNA2T00077247001 {ECO:0000313|EMBL:CDY43751.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY43751.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY43751.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032567; CDY43751.1; -; Genomic_DNA. DR EnsemblPlants; CDY43751; CDY43751; GSBRNA2T00077247001. DR Gramene; CDY43751; CDY43751; GSBRNA2T00077247001. DR OMA; LECEADD; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 243 AA; 28255 MW; 468EA241400E116D CRC64; MSINQYSSEF YYHSLMWQQQ QQHHHQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE RYFPLAAAAV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG DVVLFHRHRA DGGRFFIGWR RRGDSSSSSD SYRYLQSNAS LQYYPHAGAQ AVENQRGNSK TLRLFGVNME CQIDSDWSEP STPDGFTTCP TNQDQFPIYP EHYPPPYYMD VSFTGDVHQS QQG // ID A0A078I217_BRANA Unreviewed; 150 AA. AC A0A078I217; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA04g20470D protein {ECO:0000313|EMBL:CDY43644.1}; GN Name=BnaA04g20470D {ECO:0000313|EMBL:CDY43644.1}; GN ORFNames=GSBRNA2T00076988001 {ECO:0000313|EMBL:CDY43644.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY43644.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY43644.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032564; CDY43644.1; -; Genomic_DNA. DR EnsemblPlants; CDY43644; CDY43644; GSBRNA2T00076988001. DR Gramene; CDY43644; CDY43644; GSBRNA2T00076988001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 150 AA; 17694 MW; 7F96D3ED185AE23C CRC64; MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEVVR PPTMASSSKA FFTSNDVFMK VRRWRIKKEN // ID A0A078I319_BRANA Unreviewed; 344 AA. AC A0A078I319; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA01g07410D protein {ECO:0000313|EMBL:CDY43503.1}; GN Name=BnaA01g07410D {ECO:0000313|EMBL:CDY43503.1}; GN ORFNames=GSBRNA2T00076786001 {ECO:0000313|EMBL:CDY43503.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY43503.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY43503.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032560; CDY43503.1; -; Genomic_DNA. DR EnsemblPlants; CDY43503; CDY43503; GSBRNA2T00076786001. DR Gramene; CDY43503; CDY43503; GSBRNA2T00076786001. DR OMA; CKRESAS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 306 341 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 306 341 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 38804 MW; A6CE0062AEAEF9EE CRC64; MAPPGFFKIF LSHFSSESMA IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMVKRRDEVY FGQGWSKFVE DNCLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDKE DTNTSSEPEM AQTVPNARNQ EDSNIIEPEV AQRVPRTRNK GKKRVVVQDS DDSFISEDSN SLSDSSYSPP NDDTLLDVTP KVTNSRKKGE LRSVNSNVGS TSKSSGSVSR KRQSTIKNPE VYLDDPNNVC FEIIIKNRIY ELNVPKQIVK DYCLKFQAYV CYIDNHGKLE ARAATWQDQR VTIKKWERIC KRNGLKKGDR LLCEIFRKEG LVYAVKIHVV TTTS // ID A0A078I393_BRANA Unreviewed; 611 AA. AC A0A078I393; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA01g06910D {ECO:0000313|EMBL:CDY43553.1}; GN ORFNames=GSBRNA2T00076844001 {ECO:0000313|EMBL:CDY43553.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY43553.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY43553.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032560; CDY43553.1; -; Genomic_DNA. DR EnsemblPlants; CDY43553; CDY43553; GSBRNA2T00076844001. DR Gramene; CDY43553; CDY43553; GSBRNA2T00076844001. DR OMA; NSICTIE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 525 605 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 611 AA; 67651 MW; 90F9B13A30E74E97 CRC64; MINVMNPMRS GSEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADLESD EVFATLKLIP LKDNDHEYRD GEESNGLGSN NSEKTPSFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYN AEPPVQTILA KDVHGEVWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD SIVFMRAENG DLCVGIRRAK RGGIGNNGLE KGKVTAESVV EAAKLAVSGR GFEVVYYPRA SSSEFCVKAL DARAAMRIPW CSGMRFKMAF ETEDSSRISW FMGTVSAVSV SDPVRWPNSP WRLLQVAWDE PDLLQNVKRV NPWLVELVSN VHPIIPSFSP PRKKMRLPQH PDYNTRISVP SFASNPLIRS VLDNVPVGLQ GARHNAHQYY GLSSSDLHHY YLNRPHPPPS STLSVPPPLG FRNIDSKNEK GFCFLTMGTS PCNDTESKKS HIVLFGKLIL PEEQKGSEKT QLSSGGSNQN CVVGSSSEEG SPCSKKAHDG LGLETGHCKV FMESDDVGRT LDLSVLGSYE ELGMKLSDMF GIQKSEMLSS VLYRDASGAV KYPGNEPFSE FLKTARRLTI LSEQGSESVV V // ID A0A078I5F2_BRANA Unreviewed; 298 AA. AC A0A078I5F2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA03g52800D protein {ECO:0000313|EMBL:CDY45307.1}; GN Name=BnaA03g52800D {ECO:0000313|EMBL:CDY45307.1}; GN ORFNames=GSBRNA2T00081759001 {ECO:0000313|EMBL:CDY45307.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45307.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45307.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032620; CDY45307.1; -; Genomic_DNA. DR EnsemblPlants; CDY45307; CDY45307; GSBRNA2T00081759001. DR Gramene; CDY45307; CDY45307; GSBRNA2T00081759001. DR OMA; YAVIIHI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 47 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 47 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 33907 MW; 137495A756058BCE CRC64; MKRKRDEVYF GKGWTKFVTD NSLNDGDFLT FVYNGANVFE VSIYGLGGCK EMRAVTEVEE VKEDSVVSLS STDSDTSSES VVANTISKNK GQSQVVEDED ESEEAEAETC SESTVAKTTT GSRNKGKKKE KVVESSNEDS DSDYTEANED SDSDDTEVSG DLYAFSESSN TVAQPKKKRE RVTIKKIKDP EKYLVDPKNV FFETNVKNRP YELLVSAQLV KDYDLKFKKL VYYTDYHKDG KLQAKTTKWK DNRVCIKKWN RICKRNKLKK GDGILCELKR KEGFVYAVII HIVREKDL // ID A0A078I674_BRANA Unreviewed; 299 AA. AC A0A078I674; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA04g14590D protein {ECO:0000313|EMBL:CDY45592.1}; GN Name=BnaA04g14590D {ECO:0000313|EMBL:CDY45592.1}; GN ORFNames=GSBRNA2T00082319001 {ECO:0000313|EMBL:CDY45592.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45592.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45592.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032629; CDY45592.1; -; Genomic_DNA. DR EnsemblPlants; CDY45592; CDY45592; GSBRNA2T00082319001. DR Gramene; CDY45592; CDY45592; GSBRNA2T00082319001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 201 296 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 201 296 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 32735 MW; 3DAE256CD38037CB CRC64; MNISETKVKT EVDSSSSDHP CPLALVTASN VRKDTQCLRQ DLCPTVSIHD GTQGDNNKKK RRGRPPTSPS QKQFMKLKLA HDSLIKYRQY LSVPFMRANG MTKPGLITLV GKDGAKWKVN LYEEKSGSSL CLGKGWKDFA KANGLKTGEY FTLESAWKNE IPMLSLVNTE SASDGKERGE SSKAMEKERS TDTSSIVQNR VVTLALETKD VKACTLHLPS EFVTAIGIKK LGTITLLGKD GMEWCGCLLS RDGTVAVGVG WRNFCEANGV KLGDSFSLVF INEEEDTGPV FKFSPNSGN // ID A0A078I6P4_BRANA Unreviewed; 1113 AA. AC A0A078I6P4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA02g05070D {ECO:0000313|EMBL:CDY45069.1}; GN ORFNames=GSBRNA2T00081341001 {ECO:0000313|EMBL:CDY45069.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45069.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45069.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032613; CDY45069.1; -; Genomic_DNA. DR EnsemblPlants; CDY45069; CDY45069; GSBRNA2T00081341001. DR Gramene; CDY45069; CDY45069; GSBRNA2T00081341001. DR OMA; CMEGDVQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 936 1029 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1113 AA; 123131 MW; 287D523BC065EBCB CRC64; MLTTSLININ SELWHACAGP LISLPPAGSL VVYFPQGHSE QVAASMQKQT DFIPSYPNLP SKLICMLQNV TLNADPETDE VYAQMTLQPV NKYDRDALLA SDMGLKLNRQ PNEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPALDFSMQP PCQELVAKDI HDNTWTFRHI YRGQPKRHLL TTGWSVFVSN KRLFAGDSVL FIRDGKAQLL LGIRRANRQQ PALSSSVISS DSMHIGVLAA AAHANANNSP FTIFYNPRAA PAEFVVPLAK YTKAMYAQVS LGMRFRMIFE TEECGVRRYM GTVTGISDLD PVRWKSSQWR NLQIGWDESA AGDRPSRVSV WDIEPVLTPF YICPPPFFRP RFAGQPGMPD DETDMESALK RAMPWLDNGL EMKDSSSSIF PGLSLVQWMS MQQQNGQLPS SAAAAQSGFF PSMLPPATGM HNNLGGTDDP SKLLSFQTPP GGISSANLQF NKPNPQASMS QLPQPPTTLS QQQQPQQLLH SSLNHQQQQS QPQQQQTLQQ QHHQPLHQQT QQLQQQQQQL QSHPHPQPQS HQQAAQQHQA QQASMHHLQP PVVSVSMASS VIVPPSSSLN QNCQQQQQQS TQLQHTHRHL GASTSQSNVV ETSKSSSSNP MSIPPHDTQF PRQLEQQQPP VLVNGPNQQH KAQQTHQQMF QQSLLEQPHL QFQLLQRLQQ QQQQFLMPGS SSLQSQLLHQ QLQQPPPQML VSRPQDKQNP LVGGGGVKAY SGITDGGDAP SSSTSPSTNN CQISSSTFLN RTQSGPPTLM PDAAVDISGS LVQDLYSKSD MRLKHELAGP QKSKASLTDH HHQLEASASG TSFLAPTFGL DSDSRNSLLA GANVDNGFVP DTLLSRGYDS QKDLQNMLSN YGGVTNDIGT EMSTSAIRTQ SFGIPNVPAI SNDVAVNDAG GVLGGGLWPT QTQRMRTYTK VQKRGSVGRS IDVNRYRGYD ELRHDLARMF GIEGQLEDPQ TSDWKLVYVD HENDILLVGD DPWEEFVNCV QSIKILSSAE VQQMSLDGNF AGVPVTNQAC SGGDSGNAWR GHYDDNSATS FNRFPLDTVE YSLVKYLELS LYFTRRFYQF GMHVNGKRSP EHSVLVPVRL FNF // ID A0A078I6V3_BRANA Unreviewed; 512 AA. AC A0A078I6V3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA04g14580D protein {ECO:0000313|EMBL:CDY45591.1}; GN Name=BnaA04g14580D {ECO:0000313|EMBL:CDY45591.1}; GN ORFNames=GSBRNA2T00082317001 {ECO:0000313|EMBL:CDY45591.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45591.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45591.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032629; CDY45591.1; -; Genomic_DNA. DR EnsemblPlants; CDY45591; CDY45591; GSBRNA2T00082317001. DR Gramene; CDY45591; CDY45591; GSBRNA2T00082317001. DR OMA; FICTITH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 135 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 259 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 409 506 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 135 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 259 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 409 506 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 512 AA; 58643 MW; 866A58915051BBB0 CRC64; MVNKGFFKPL LPGFHSHLTI PVAFFLKYIE GTNEHHTAKL RSDASMITWQ VKIEDGKKLT EGWKEFALAH DLRIGDILIF RQEKDMAFHV TLLGPSDCEI QYESCSEEEN NLGKIPKKMN SKREAESSSS LDPSCFKTNI WPSSLRYDTL NLPKSFVRAN GLETSCGGEI VLMNEKGRPW TLVLKQKLSG TTYIRRGWRR FCIANRLKTG GVYTFKLIQS GRTPVLLLSS KESESESEER NFEKIQRKKA ESSSLDPSCF VANISRATLR YDTLGLPMKF SRENGLEARC GEIVLMNEKG RTWKLNLKRK RSCGTMYITQ GWRSFRSANG LRAGSSSTFK LIKRGGTLAL RLSSKETEEE EEDCSLKAIE VESLSTEPES DEESSQDDEK IKKHRSTWKA SSSQSQNRFV TLTLRPFNLE KYSLFLPLRF TRWHGINEET KMRLLDKKGV MWSTDLRAGK INNDKIRLVG GWQEFFKANC VKTGESIMLK LIWEGDKRCV LKFCSKVKHE TK // ID A0A078I858_BRANA Unreviewed; 337 AA. AC A0A078I858; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA04g14560D protein {ECO:0000313|EMBL:CDY45589.1}; GN Name=BnaA04g14560D {ECO:0000313|EMBL:CDY45589.1}; GN ORFNames=GSBRNA2T00082315001 {ECO:0000313|EMBL:CDY45589.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45589.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45589.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032629; CDY45589.1; -; Genomic_DNA. DR EnsemblPlants; CDY45589; CDY45589; GSBRNA2T00082315001. DR Gramene; CDY45589; CDY45589; GSBRNA2T00082315001. DR OMA; EFCYAND; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 337 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 337 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38671 MW; FE73CB357761850E CRC64; MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL TDGWKEFALA HDLRVGDIVI FRQEKDMAFH VTLFGPSCCE IQYGACLDDK NKLVKIQSKK KVKKNTKREV ETCTLDPSCY VVNVTPSSLR YDMLYIPKSF ARANGLETRS GEIVLMNEKG TSWTLILKRK NSCGTMYITR GWRRFCRVNG LRAGSFFTFK LIQRGGTLVL PSSSPFQNLF VTLTLKPYEV EKSTLYLPVQ FTRRHSINEE TRMTLLDKNG VKWSTDLRSE KRSDKIRLVG GCKEFFKANC VEMGESIIVK LIWDGDTSCV LKFCSKV // ID A0A078I8L8_BRANA Unreviewed; 267 AA. AC A0A078I8L8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA02g29460D protein {ECO:0000313|EMBL:CDY47260.1}; GN Name=BnaA02g29460D {ECO:0000313|EMBL:CDY47260.1}; GN ORFNames=GSBRNA2T00086985001 {ECO:0000313|EMBL:CDY47260.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY47260.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY47260.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032704; CDY47260.1; -; Genomic_DNA. DR RefSeq; XP_013723834.1; XM_013868380.1. DR RefSeq; XP_013723840.1; XM_013868386.1. DR RefSeq; XP_013723847.1; XM_013868393.1. DR EnsemblPlants; CDY47260; CDY47260; GSBRNA2T00086985001. DR GeneID; 106427656; -. DR Gramene; CDY47260; CDY47260; GSBRNA2T00086985001. DR KEGG; bna:106427656; -. DR OMA; FNVECSG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30349 MW; F487FEB137829F71 CRC64; MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA AAAECPRQDS YYDQNMYNYY TPHSSAS // ID A0A078I8V8_BRANA Unreviewed; 350 AA. AC A0A078I8V8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA02g14040D protein {ECO:0000313|EMBL:CDY45849.1}; GN Name=BnaA02g14040D {ECO:0000313|EMBL:CDY45849.1}; GN ORFNames=GSBRNA2T00082795001 {ECO:0000313|EMBL:CDY45849.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45849.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45849.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032638; CDY45849.1; -; Genomic_DNA. DR EnsemblPlants; CDY45849; CDY45849; GSBRNA2T00082795001. DR Gramene; CDY45849; CDY45849; GSBRNA2T00082795001. DR OMA; CDEEEAA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 189 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 189 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39060 MW; 56BF4707D1D7FCA4 CRC64; MVFSCIDESS STSESFSPAT ATATATATKF SAPPLPPLRL NRMRSGGSNV VLDSKNGVDI DSRKLSSSKY KGVVPQPNGR WGAQIYVKHQ RVWLGTFCDE EEAAHSYDIA ARKFRGRDAV VNFKTFLASE DDNGELCFLE AHSKAEIVDM LRKHTYADEL AQSNKRSGAN TNTNTTQSHT VSRTREVLFE KVVTPSDVGK LNRLVIPKQH AEKYFPLPSL SVTKGVLINF EDVTGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVTFERSTGS DRQLYIDWKI RSGPSKNPVQ VVVRLFGVDI FNVTSAKPSN VVDACGGKRS RDVDMFALRC SKKHAIINAL // ID A0A078I8X7_BRANA Unreviewed; 238 AA. AC A0A078I8X7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA04g14550D protein {ECO:0000313|EMBL:CDY45588.1}; GN Name=BnaA04g14550D {ECO:0000313|EMBL:CDY45588.1}; GN ORFNames=GSBRNA2T00082314001 {ECO:0000313|EMBL:CDY45588.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45588.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45588.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032629; CDY45588.1; -; Genomic_DNA. DR EnsemblPlants; CDY45588; CDY45588; GSBRNA2T00082314001. DR Gramene; CDY45588; CDY45588; GSBRNA2T00082314001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 143 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 143 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 238 AA; 27402 MW; 58D94BC8846C3050 CRC64; MEGRNDHKNT AKLRSEASEM TWKVNIEDGR RLTEGWKEFA LAHDLRVGDI VIFRQERDMS FHVTLLGPSC CEIQYGSCID QDNNLGQFFI QKKNPKREEA ESSCFVANVT PSNLRYDRLE SDEDSNHISS QERIEREDKK GGFVTLTVKP SDFKNSRLYL PMAFTKDNGI NAETKLALLD KNGVKWSTDL RSEYNGKRIR MIGGWKKFFK ANFLKIGEPI MFKLIWDGNT SCVLKLCS // ID A0A078I9I2_BRANA Unreviewed; 228 AA. AC A0A078I9I2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC03g16210D protein {ECO:0000313|EMBL:CDY45798.1}; GN Name=BnaC03g16210D {ECO:0000313|EMBL:CDY45798.1}; GN ORFNames=GSBRNA2T00082729001 {ECO:0000313|EMBL:CDY45798.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY45798.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY45798.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032637; CDY45798.1; -; Genomic_DNA. DR EnsemblPlants; CDY45798; CDY45798; GSBRNA2T00082729001. DR Gramene; CDY45798; CDY45798; GSBRNA2T00082729001. DR OMA; LSGCKEM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 25418 MW; 31E8E9C42FCF3F97 CRC64; MSESEEEVDL PRFFKVFLSE TASESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGLSGCKEMR AVVETVNLSD ANSDEEEEEG DDDPSFDAGE DDEVSQGLCP VDSDETVSNA EGFSSLEVES NPCFTTTLKN RIYELLIPAI VVKEHRLTFC DRIKYIDGEG IMYGAKGKWS DDRICFKG // ID A0A078I9V0_BRANA Unreviewed; 359 AA. AC A0A078I9V0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA09g27380D protein {ECO:0000313|EMBL:CDY46611.1}; GN Name=BnaA09g27380D {ECO:0000313|EMBL:CDY46611.1}; GN ORFNames=GSBRNA2T00085888001 {ECO:0000313|EMBL:CDY46611.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY46611.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY46611.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032679; CDY46611.1; -; Genomic_DNA. DR EnsemblPlants; CDY46611; CDY46611; GSBRNA2T00085888001. DR Gramene; CDY46611; CDY46611; GSBRNA2T00085888001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 41027 MW; 32DF3D26E85055BB CRC64; MDNFLPFSSS NANFVQELSM DLNNNRSRLS TFPTYDHHHQ AQPHSLQPYS YVACPVDQTA AMNPQIPVTQ TGSEFGSLVC NPGFGQARGG FLDPHTAKMA RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY PSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVD MRDADSMQNW SFKYKFWSNN KSRMYVLENT GQFVTEKRVE IGDFLTIYED ESKNLYFSIR KHADKPNEGR EDESMEANDM NFYEDIAFDF IPKDEDEDSI AMLIGNLNDH YPNPNNRMDL PIDLHQHHQA TSLPPADYMT NPQYGGSSND LMSFNDFVW // ID A0A078IAA5_BRANA Unreviewed; 604 AA. AC A0A078IAA5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=BnaA03g52450D protein {ECO:0000313|EMBL:CDY46123.1}; GN Name=BnaA03g52450D {ECO:0000313|EMBL:CDY46123.1}; GN ORFNames=GSBRNA2T00083285001 {ECO:0000313|EMBL:CDY46123.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY46123.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY46123.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032650; CDY46123.1; -; Genomic_DNA. DR EnsemblPlants; CDY46123; CDY46123; GSBRNA2T00083285001. DR Gramene; CDY46123; CDY46123; GSBRNA2T00083285001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR005692; Tic22. DR InterPro; IPR007378; Tic22-like. DR PANTHER; PTHR33926; PTHR33926; 1. DR Pfam; PF02362; B3; 2. DR Pfam; PF04278; Tic22; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR TIGRFAMs; TIGR00995; 3a0901s06TIC22; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 498 596 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 290 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 498 596 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 68417 MW; E3C16E7BF1F9388E CRC64; MEPSLKPNPF LSFSSFLHTH CNRFASDLSA RFEDTKRFAE SLTTRRFTPP PFASVSQSPK PSAGTSTATL NPSHVAKALA GTSVFTVSNT NNEFVLISDP TGDKSIGLLC FRQEDAEAFL AQARLRRREL KANAKVVPIN LDQVYLLKVE GISFRFLPDP IQIKNAMELK SSASKNGFDG VPVFQSELLV VRKKNKRYCP VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMERS EKNSGWEDII FIPPGRSYAQ HMQEKKKKME ENCEDCMRWE EQLYWNHFQT VHFSQLLLPG FHNRLAIPKK FSTYCKRKLA KIVTLKSPSG TKYNVGLEED DEKTLAFRCG WDKFVKDHSL HESDLLVFKF NGSSEFEVLI FDGDTLCEKP TSYFVRKCGH AAEKTSRTGT DQEEHSNSDI DTDSGQLPVI SPTSKGPISE GKYPIGVFKK MRGQISINDP DRKADVEMIP GGSRKRIGEI NKKKALSLAK RAVSTKGFLV VMKRSHVVSK CFLYVPVQWS ARNMSREPQD VVMQVGERKW HLKFKYYGSK GRGGVSVGWK KFVRDNNLCE GDVCVFEPAK PEAKPFHLDV YIFRAAEAES SNNG // ID A0A078IB77_BRANA Unreviewed; 339 AA. AC A0A078IB77; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaA08g02030D protein {ECO:0000313|EMBL:CDY46564.1}; GN Name=BnaA08g02030D {ECO:0000313|EMBL:CDY46564.1}; GN ORFNames=GSBRNA2T00085787001 {ECO:0000313|EMBL:CDY46564.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY46564.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY46564.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032675; CDY46564.1; -; Genomic_DNA. DR RefSeq; XP_013723652.1; XM_013868198.1. DR EnsemblPlants; CDY46564; CDY46564; GSBRNA2T00085787001. DR GeneID; 106427467; -. DR Gramene; CDY46564; CDY46564; GSBRNA2T00085787001. DR KEGG; bna:106427467; -. DR KO; K09287; -. DR OMA; CECRENS; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39237 MW; 97F2BDC2B6A2DA6C CRC64; MVILHEISNE AKTTTETSGS SNSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW GAQIYAEHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNMVQSKQES NKCFSCTQLF HKELTPSDVG KLNRLVIPKK YAVKHLPFIS DDQEEGEAVD DVEVVFYDST MRQWKFRYCY WRSSQSFVFT RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH NRSEGEMKTE NFFNSKLEDE ETKQEEKKGG FMLFGVRIQ // ID A0A078IBW5_BRANA Unreviewed; 604 AA. AC A0A078IBW5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA01g13580D {ECO:0000313|EMBL:CDY47607.1}; GN ORFNames=GSBRNA2T00087815001 {ECO:0000313|EMBL:CDY47607.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY47607.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY47607.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032726; CDY47607.1; -; Genomic_DNA. DR EnsemblPlants; CDY47607; CDY47607; GSBRNA2T00087815001. DR Gramene; CDY47607; CDY47607; GSBRNA2T00087815001. DR OMA; EAMNNKF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 492 592 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 106 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 68578 MW; 91592DFDB0B3F908 CRC64; MYEELWKLSA GPLVDVPQAE ERVYYFPQGH MEQLEASTQQ DLNTMKPLFD LPPKILCRVM NVRLQAEKDT DEVYAQIMLM PEVTVDEPMS PDPSPPEPQR PKFHSFTKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYKWKFKH IFRGQPRRHL LTTGWSTFVT SKKLVAGDTF VFLRGENGEL RVGVRRANRQ QSSMPSSVIS SHSMHLGVLA TACHATQTRS MFTVYYKPRT SQFIISLNKY LEAMNNKFSV GMRFKMRFEG DDSPERRFSG TVVGVQDCSP HWKDSKWRSL VVNWDEPASF TRPDKVSPWE MEPFAASENV PQSVNKRPRH VNEVSALDVG VPSSNFWSSA LTQSHEFAQS CITSQRNPPQ NSDWPVSPYS TLNGQMVFPV EQKKPETTTA SCRLFGIDLM SSSLPAPEEK TAPMRPINIT KPTLDSNTDP KSEISKLSEE KKQEPAQASP KEVQSKQINS SRSRTKVQMQ GVPVGRAVDL TLINGYVELI DDLEKLFDIE GELKSRNQWE IVFTDDEGDM MLVGDDPWPE FCNMVKRIFI WSKEEVKKMT PGNQLRILLT EVDTTISKTE NYSN // ID A0A078IBW9_BRANA Unreviewed; 844 AA. AC A0A078IBW9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC07g42330D {ECO:0000313|EMBL:CDY46728.1}; GN ORFNames=GSBRNA2T00086041001 {ECO:0000313|EMBL:CDY46728.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY46728.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY46728.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032682; CDY46728.1; -; Genomic_DNA. DR EnsemblPlants; CDY46728; CDY46728; GSBRNA2T00086041001. DR Gramene; CDY46728; CDY46728; GSBRNA2T00086041001. DR OMA; IIAKDMH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 307 409 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 758 836 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 307 409 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 844 AA; 94366 MW; C5A0D229CB079622 CRC64; MEKFYWAPTR EDHIGVCKGI FRTDKIKDED IVTLVDQFPG QSIVEKISKR LVNSREGPSV FEQPEMTLEK LMEYGNMLVM EQENVKRVRQ ESPASLCNLR CRPRLVDLHR GDGNHIRTFE KPNLSPSYTR TLFISLCTAK VNSYPILKQK LSCRIFRFSR NQEKGFLEQN LQELVSDLLL LFKVLLHLKE MINVMDPMKS GSEKGLDPQL WHACAGGMVR MPPVNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLRLIP LKDDDHEYGD GQEGNGFESN SEKTPSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYNA EPPVQTILAK DVHGDVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFMRAESGD LCVGIRRAKR GGIGNGPDYS PGWNPIGGSC GYSSLLREDE SNSLRRSNCS LADRKGKVAA ESVIEAATLA LSGRGFEVVY YPRASTSEFC VKALDARAAM RIPWCSGMRF KMAFETEDSS RISWFMGTVS AVSVSDPIRW LNSPWRLLQV AWDEPDLLQN VKRVNPWLVE LVSNVHPLPL TSFSPPRKKM RLPQHPDYNN LINSIPVPSF PSNPLIRSNP LSSVLDNVPV GLQGARHNAH QYYGLSSSDL HHYYLNRPPP PPQPSALPLS QPLGLRNIDS RNEKGFCFLT MGTTPCNDDT ESKKSHIVLF GKLILPEEQI SEKGSTDTAN TSGGSKLSSS DEGSPCSNKA HDAAGLETGH CKVFMESDDV GRTLDLSVLG SYEELSRKLS DMFGIQKAEM LSSVLYRDAS GAIKYAGNEP FSEFLKTARR LTIVTEQGSE SVVV // ID A0A078ICJ3_BRANA Unreviewed; 350 AA. AC A0A078ICJ3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA01g07650D protein {ECO:0000313|EMBL:CDY48600.1}; GN Name=BnaA01g07650D {ECO:0000313|EMBL:CDY48600.1}; GN ORFNames=GSBRNA2T00091349001 {ECO:0000313|EMBL:CDY48600.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY48600.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY48600.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032781; CDY48600.1; -; Genomic_DNA. DR EnsemblPlants; CDY48600; CDY48600; GSBRNA2T00091349001. DR Gramene; CDY48600; CDY48600; GSBRNA2T00091349001. DR OMA; KANCKSA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39470 MW; 8F308BA729BFBC22 CRC64; MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRDEVY FGQGWAKFVE DNGLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD DKEDTNTSSE PEMAQTVPNA TNQEDSNIIE PEVAQRVPRT RSKGKKRVVV QDSDDSFISE DSDSLSDSSY SPPNDDTLLD VTPKVTNSRK KGELRSVNSN VGSTSNSSLS VSRKRPSTIK NPEVYLDDPN NVCFETTVKK RIYDLSVPSQ TVRDYCLKFQ DYVYYIDNHE NGMLEARVAT WQDYRVSIKK WERICERNGL KKGDRLLCEL FRKEGLVYAV KIHVVTTTTS // ID A0A078IDQ2_BRANA Unreviewed; 557 AA. AC A0A078IDQ2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaAnng09990D {ECO:0000313|EMBL:CDY49005.1}; GN ORFNames=GSBRNA2T00092211001 {ECO:0000313|EMBL:CDY49005.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY49005.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY49005.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032806; CDY49005.1; -; Genomic_DNA. DR EnsemblPlants; CDY49005; CDY49005; GSBRNA2T00092211001. DR Gramene; CDY49005; CDY49005; GSBRNA2T00092211001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 446 528 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 110 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 557 AA; 63649 MW; D5CD0F000BAEAD5D CRC64; MATDQIMHVQ PESLATDGTN NYLYDQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPRH ENNIQNINYF TKVLSASDTN KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWNFKH TLRGTPQRHL FTSGWNEFSK GKDLVVGDCF VFLRGENGES RVGIRKSAHH QQHNIPSPLI SKQSMYHGVV ATALNAIKRK CMFVVFYKPR LSQFLVNFDK FIDGVNRKFS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS THWKDSEWRS LEVQWDESAT IPRPDKVSPW EIEPLTHSSN ILKSVFLKNK RQSEIDDFGQ EVGQTSIQSS MSYSFPSMSK PNYNEQMVQA LKETSTTTEA TSYRLFGVDL TVPAKTKDPV QPTHSYKKSK ISKIFEEVKV DHIQTKTHTK VCMEGAVERT VDLTAFDGYN QLIHELERLF DIKDKLHMHN QWKIVFINAD GDMMLLGDDP WPKFCNTAKE IFIYSESDAK IGNEDNKFAE GGPMLTTTIL PPDVNNN // ID A0A078IF45_BRANA Unreviewed; 350 AA. AC A0A078IF45; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA01g07630D protein {ECO:0000313|EMBL:CDY48602.1}; GN Name=BnaA01g07630D {ECO:0000313|EMBL:CDY48602.1}; GN ORFNames=GSBRNA2T00091355001 {ECO:0000313|EMBL:CDY48602.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY48602.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY48602.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032781; CDY48602.1; -; Genomic_DNA. DR EnsemblPlants; CDY48602; CDY48602; GSBRNA2T00091355001. DR Gramene; CDY48602; CDY48602; GSBRNA2T00091355001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39457 MW; FE30FB717D218494 CRC64; MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRDEVY FGQGWAKFVE DNGLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD DKEDTNTSSE PEMAQTVPNA TNQEDSTIIE PEVAQRVPRT RSKGKKRVVV QDSDDSFISE DSDSLSDSSY SPPNDDTLLD VTPKVTNSRK KGELRSVNSN VGSTSNSSLS VSRKRPSTIK NPEVYLDDPN NVCFETTVKK RIYDLSVPSQ TVRDYCLKFQ DYVYYIDNHE NGMLEARVAT WQDYRVSIKK WERICERNGL KKGDRLLCEL FRKEGLVYAV KIHVVTTTTS // ID A0A078IFR4_BRANA Unreviewed; 304 AA. AC A0A078IFR4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA04g26820D protein {ECO:0000313|EMBL:CDY48008.1}; GN Name=BnaA04g26820D {ECO:0000313|EMBL:CDY48008.1}; GN ORFNames=GSBRNA2T00088653001 {ECO:0000313|EMBL:CDY48008.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY48008.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY48008.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032749; CDY48008.1; -; Genomic_DNA. DR RefSeq; XP_013747678.1; XM_013892224.1. DR EnsemblPlants; CDY48008; CDY48008; GSBRNA2T00088653001. DR GeneID; 106450543; -. DR Gramene; CDY48008; CDY48008; GSBRNA2T00088653001. DR KEGG; bna:106450543; -. DR OMA; SITMTHG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 34056 MW; 521264C6C155001B CRC64; MMTNLSLARE GEAQVKKPIE EVEREHMFDK VVTPSDVGKL NRLVIPKQHA ERYFPLDSSS NEKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRCVGDS RLFIDWRRRP KVPDYPTSTA HFAAGAMFPR FYSFPTATTS TCYDLYNHQP PRHHHIGYGY PQIPREFGYG YFVRSVDQRA VVADPLVIES VPVMMRGGAR VSQEVVGTAG KRLRLFGVDM ECGESGVTNS TEEESSSSGG SLPRAGGGGA SSSSSLFQLR LGSSCEDDHF SKKGKSSLPF DLDQ // ID A0A078IHK6_BRANA Unreviewed; 547 AA. AC A0A078IHK6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA09g01790D {ECO:0000313|EMBL:CDY48583.1}; GN ORFNames=GSBRNA2T00091319001 {ECO:0000313|EMBL:CDY48583.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY48583.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY48583.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032779; CDY48583.1; -; Genomic_DNA. DR EnsemblPlants; CDY48583; CDY48583; GSBRNA2T00091319001. DR Gramene; CDY48583; CDY48583; GSBRNA2T00091319001. DR OMA; DFSERRC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 468 547 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 547 AA; 62552 MW; B1C4A5EDE7C94E8D CRC64; MANNQTMNAQ PKFRGTEGVN RYLYDQLWKL CAGPLFDLPK IGEEVYYFPQ GNIEQLVASA NDNLCQLKPI FDISSRIHCN VISIKLKVET NTDEVYAKVS LLPCSPEVEI TFPNDNNEQN IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIVAKDLH DHVWKFKHTF RGTPKRHLFT SGWKEFVKGK SLAVGDSFVF LRGENGESRV GIRKTSHQQS DMSSSVISKE SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNMKFNTSS RFTMKFEGHD FNEIIYSGTI VKMEDFSIYW KGSEWRNLQV QWDEAATIPR PNKVSLWEIE PLIPSSNILK SVIQNNKRQR EINEFVQICY AGPIISKPDY NDQMVQSTKE NSTTNASSSF RLFGVDLTAS SKARDVLEPL ESYQKNKTSE IFEEENLDQT QAVTSLTEIQ RKELSFTTSS TKVHMEGVTR TVDLTVFDGY NHMIVELEKL FNIEGKLHMH SQWKLTFKDH EGDMMLVGDD PWPKFCNIVK EIVISSK // ID A0A078IJP9_BRANA Unreviewed; 310 AA. AC A0A078IJP9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA09g03240D protein {ECO:0000313|EMBL:CDY49614.1}; GN Name=BnaA09g03240D {ECO:0000313|EMBL:CDY49614.1}; GN ORFNames=GSBRNA2T00093463001 {ECO:0000313|EMBL:CDY49614.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY49614.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY49614.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032847; CDY49614.1; -; Genomic_DNA. DR RefSeq; XP_013665616.1; XM_013810162.1. DR EnsemblPlants; CDY49614; CDY49614; GSBRNA2T00093463001. DR GeneID; 106370093; -. DR Gramene; CDY49614; CDY49614; GSBRNA2T00093463001. DR KEGG; bna:106370093; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 35687 MW; E9A5F73A5CB1FA5B CRC64; MASGSGSNSN DFNMAMGEHM FDKVLTTSDV GKLNRLVIPK QHAENYFPLE EIENGTMLEF QDRNGKMWKF RYLYWSSSQS YVMTKGWVRF VKDKNLESGD TISFHRSYVP DDTEPGKRIK KLYVDWRHRA DRNLVHNINH HHHYPLLMPP TYPTAGYYPL SGYSMPHYQR LPPFYHNQFQ ERDFSGYGYG GPYYARSPLD HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS ARLPPYPPPH QPPQEGTAKK LRLFGVDVEE SSSSGEARGE MAVAGYSSSS PVVIRDEESS SAMQLSEDEE YKRKGKSIDF // ID A0A078ILG9_BRANA Unreviewed; 312 AA. AC A0A078ILG9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA10g28180D protein {ECO:0000313|EMBL:CDY50841.1}; GN Name=BnaA10g28180D {ECO:0000313|EMBL:CDY50841.1}; GN ORFNames=GSBRNA2T00097578001 {ECO:0000313|EMBL:CDY50841.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY50841.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY50841.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032943; CDY50841.1; -; Genomic_DNA. DR EnsemblPlants; CDY50841; CDY50841; GSBRNA2T00097578001. DR Gramene; CDY50841; CDY50841; GSBRNA2T00097578001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35379 MW; 2D25BC7333988826 CRC64; MVPIHFLKSP NQTRFPPIFG KPFPLLTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH DHQNNRTEAR FSYSWDYCFK AEVTDSNVRE DKLNLPVGAT GCNALNKECK KAKLVNIEGK AWNVSMRFNE SGGFYYIKGW RKFCAENKCH IGDSFVFNVV GDGNTLPLMC VCSPSKECLK SAGDIASSSR VN // ID A0A078IM05_BRANA Unreviewed; 625 AA. AC A0A078IM05; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC07g38640D {ECO:0000313|EMBL:CDY50434.1}; GN ORFNames=GSBRNA2T00096693001 {ECO:0000313|EMBL:CDY50434.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY50434.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY50434.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032910; CDY50434.1; -; Genomic_DNA. DR EnsemblPlants; CDY50434; CDY50434; GSBRNA2T00096693001. DR Gramene; CDY50434; CDY50434; GSBRNA2T00096693001. DR OMA; CHRDANE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 601 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 625 AA; 70589 MW; E0758A1811C9C81E CRC64; MYGELWKLCA GPVVDVPQAE ERVFYFPQGH MEQLEASTQQ DLNAVKPTKP LFDLPPKILC RVMDVRLQAE KDTDEVYAQI MLMPEGTVDE PVSPDPSPPE SQRPKVHSFS KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELV AEDVHGYQWK FKHIFRGQPR RHLLTTGWST FVTAKRLVAG DTFVFLRGEN GELRVGVRRA NRQQTNMPSS VISSHSMHLG VLATACHATQ TRSMFTVYYK PRTSQFIISL NKYLEAMSNK FAVGIRFKMR FEGEDSPERR FSGTVVGVKD CSTHWKDSNW RCLEVHWDEP ASISRPDKVS PWEIEPFVTS ENVPHSVMPK NKRPRHFSEV SALDVGKTAS NLWSSALTQS HEFAQSCIAS QRNSPQQCYR EATEDAKNSD WPAIPYSATL NNQMVFPVEQ KKPESTASYR LFGIDLLSSF IPATEEKTAP TLPINITKPT PDSNSDPKSE VSKLSEEKKQ EPAQASSKEV QSKENSSARS RTKVQMQGVP VGRAVDLTVL NGYSELIDDL EKLFDIEGEL KSRNQWEIVF TDDEGDMMLV GDDPWPEFCN VVKRIFIWSK EEVKKMTPGN QLRKLLTEVD TTLTTTISKT ENHSN // ID A0A078IPA9_BRANA Unreviewed; 315 AA. AC A0A078IPA9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC03g72370D protein {ECO:0000313|EMBL:CDY50908.1}; GN Name=BnaC03g72370D {ECO:0000313|EMBL:CDY50908.1}; GN ORFNames=GSBRNA2T00097754001 {ECO:0000313|EMBL:CDY50908.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY50908.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY50908.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032948; CDY50908.1; -; Genomic_DNA. DR EnsemblPlants; CDY50908; CDY50908; GSBRNA2T00097754001. DR Gramene; CDY50908; CDY50908; GSBRNA2T00097754001. DR OMA; YNLYNHQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 35584 MW; 09459FFCA1020A9E CRC64; MMTNLSLARE GEGEEEEEEE EEAEAKKPTE EVEREHMFDK VVTPSDVGKL NRLVIPKQHA ERYFPLDSSS NEKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFLRCVGDT ERDSRLFIDW RRRPKVPDYP TSTSHFPAGA MFPRFYSFPT ATTSTSYNLY NHQQPRHHHS GYCYPQIPRE FGYGYVVRSV DQRAVVADPL VIESVPVMMH GGARMNQAAV GTAGKRLRLF GVDMECGESG VTNSTEEESS SSGGSLPRGG ASPSSSMFQL RLGNSSEDDH LFKKGKSSLP FNLDQ // ID A0A078IPB0_BRANA Unreviewed; 339 AA. AC A0A078IPB0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC03g77730D protein {ECO:0000313|EMBL:CDY51249.1}; GN Name=BnaC03g77730D {ECO:0000313|EMBL:CDY51249.1}; GN ORFNames=GSBRNA2T00003011001 {ECO:0000313|EMBL:CDY51249.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY51249.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY51249.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK032978; CDY51249.1; -; Genomic_DNA. DR EnsemblPlants; CDY51249; CDY51249; GSBRNA2T00003011001. DR Gramene; CDY51249; CDY51249; GSBRNA2T00003011001. DR OMA; GEVNQES; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39204 MW; 2945409A0BFE473E CRC64; MVILHEISNE AKTTTETSGS INSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW GAQIYAEHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG KLNRLVIPKK YAVKHLPFIS DDQEEGEAVD DVEVVFYDST MRQWKFRYCY WRSSQSFVFT RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH NKSEGEMKTE NFFNSKLEDE ETKQEENKGG FMLFGVRIQ // ID A0A078IR44_BRANA Unreviewed; 271 AA. AC A0A078IR44; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaAnng11010D protein {ECO:0000313|EMBL:CDY51924.1}; GN Name=BnaAnng11010D {ECO:0000313|EMBL:CDY51924.1}; GN ORFNames=GSBRNA2T00004510001 {ECO:0000313|EMBL:CDY51924.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY51924.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY51924.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033040; CDY51924.1; -; Genomic_DNA. DR EnsemblPlants; CDY51924; CDY51924; GSBRNA2T00004510001. DR Gramene; CDY51924; CDY51924; GSBRNA2T00004510001. DR OMA; ERRMQEC; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 31205 MW; 42DF0EF8FD53FDDA CRC64; MLPERKMQEC LSKSSFSKSL SPGQNWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW QLWLRPDKKG LFMIKEDWDE FVDDNFLGLD DTLVFTHQET MYFQVRIFKK DGKEIISAPL EFEPQKETTS ASASGNTIQI EKKPSSSSGR TATRGRKSCA NLQNPERYLL NPQNPYLAKT LKKTNHLLHV GLPVIRQYGL EFGPHDSSMY FILPDGNKVD GLTKYYNDLP SFLGWADVCQ QYNLKIGDNV VCEFELSGRV VAAVRVHFVN Q // ID A0A078IRA2_BRANA Unreviewed; 501 AA. AC A0A078IRA2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC09g51490D {ECO:0000313|EMBL:CDY53570.1}; GN ORFNames=GSBRNA2T00011003001 {ECO:0000313|EMBL:CDY53570.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY53570.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY53570.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033216; CDY53570.1; -; Genomic_DNA. DR EnsemblPlants; CDY53570; CDY53570; GSBRNA2T00011003001. DR Gramene; CDY53570; CDY53570; GSBRNA2T00011003001. DR OMA; TIYNERM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 390 470 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 66 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 501 AA; 57249 MW; FC3DA25C90CA8B85 CRC64; MDDELCQLKP IFDIPSKICC NVFSIKLKVE TNTNEIYAEV SLLPDTSDVE IPIPKTENNI QNINYFTKVL SASDTSTNGG FVLYKRHAIE CLPLLDVSQL TPSQEIIAKD IHGHEWSFKH TLRGTPKRHL FTSGWNEFAK GKKLVAGDSF VFLRGENGES RVGISKAAHQ QRNIPTSLIS KQSMHHSVVA TALNAIENKC MFVVFYKPRS SQFIVNFDKF VDRVNNKFNI GSKFSMKFEG KDLNEIRYNG TIVGVRDFSA HWKDSEWRSL EVQWDEAATI PRPDKVSPWE IELLTHSSNI FKSDTLKHKR QLEVHEFGSK MWVPTIYNER MVQAMKEPST TTATTSCRLF GVDLMVPAIT KDPVEPIVSN KKCKISKIFE DEKVDHVQAK SRTKVHMEGV IERTVDLTIF DGYNQLIDEL ERLFDIKGEL HMHNQWKMFF IYNDGDMMIL GDDPWPKFCN MAKEIFICSK EDVKIGIANN RFSEGDPALT TTILPPDVNN T // ID A0A078IST5_BRANA Unreviewed; 137 AA. AC A0A078IST5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA04g28140D protein {ECO:0000313|EMBL:CDY54210.1}; DE Flags: Fragment; GN Name=BnaA04g28140D {ECO:0000313|EMBL:CDY54210.1}; GN ORFNames=GSBRNA2T00013604001 {ECO:0000313|EMBL:CDY54210.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY54210.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY54210.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033292; CDY54210.1; -; Genomic_DNA. DR EnsemblPlants; CDY54210; CDY54210; GSBRNA2T00013604001. DR Gramene; CDY54210; CDY54210; GSBRNA2T00013604001. DR OMA; YIEGRNE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 137 137 {ECO:0000313|EMBL:CDY54210.1}. SQ SEQUENCE 137 AA; 15864 MW; F78F0D075BBD0993 CRC64; MRMPNKRFFK PLVPGFHSHL TIPVAFFLKY IEGRNEHKNT ARLRSDASKI TWEVKIEDGQ KLTDGWKEFA IAHDLHIGDI LIFRQEKDMA FHVTLLGPSG CEFQYESCSE EENNLGENIP KKKNLEREAE FSSLDPS // ID A0A078IU86_BRANA Unreviewed; 814 AA. AC A0A078IU86; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaCnng25410D {ECO:0000313|EMBL:CDY53537.1}; GN ORFNames=GSBRNA2T00010891001 {ECO:0000313|EMBL:CDY53537.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY53537.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY53537.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033211; CDY53537.1; -; Genomic_DNA. DR EnsemblPlants; CDY53537; CDY53537; GSBRNA2T00010891001. DR Gramene; CDY53537; CDY53537; GSBRNA2T00010891001. DR OMA; CENLPQR; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 708 792 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 814 AA; 89646 MW; 551E997F32DDA58E CRC64; MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK QPGNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRAIRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDSVRWSNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLHDGRGEL GNGLPWLRGG GGGEQQGLLP LNYPSVGLFP WMQQRLDLAQ LGTDNNQQYQ AMLAAGLQNM GGGDPLRQQF VQLQEPPPLT TTSHNSDLML QQQQQHHLMH AQTQIMCENL PQRQEVSKQQ PAGGGGQQSV DQNAYLNALK IQNGQLQQWQ QHSDMPSPSS FMKADFTDKF ATTASPIQQN SASPGSGHGS NLLNFSITGQ SALPEQLIGE GWSPKASNTF SEPLSLPPQA YAGKSLALEP ASANVNPSVF GVDPGSGLFL PSTVPRFASS SSGGDVEAYP VSLADSGFEN SLYNSCMQDT TPELLHGVGQ INPSNQTKNF VKVYKSGSVG RSLDISRFSS YHELREELGK MFAIEGLLED PLRSGWQLVF VDKENDILLL GDDPWESFVS NVWYIKILSP EDVQEMGDHG EGSGGSLPQN PTHL // ID A0A078IU95_BRANA Unreviewed; 275 AA. AC A0A078IU95; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC02g48650D protein {ECO:0000313|EMBL:CDY54908.1}; GN Name=BnaC02g48650D {ECO:0000313|EMBL:CDY54908.1}; GN ORFNames=GSBRNA2T00014810001 {ECO:0000313|EMBL:CDY54908.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY54908.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY54908.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033359; CDY54908.1; -; Genomic_DNA. DR EnsemblPlants; CDY54908; CDY54908; GSBRNA2T00014810001. DR Gramene; CDY54908; CDY54908; GSBRNA2T00014810001. DR OMA; IEEDWNE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 275 AA; 31464 MW; 6FD2E53948DC5719 CRC64; MALNGVFDFL QENVKKPRFC KSLPLGENWK SKSMRIIPEE FVRSAHGAFE HRLVFSVSWG NSWQVWLHRD KNGLFMEEED WNEFVDDNLL CPNDILLFTH VDTMFTEVRI YKKDLPFFKQ VISAPQVLNP KPKAPSSAPP GFAPFASSAS ASGKTITSRA RQSSSPVQNP EQYLVNPQNP YFVKTLSKKI DVLYVNQEVI QRYGLKFGPH LSLVHYLLPG EKHEAVIKIY RNAPCFNRWA AICKKYNKKE GDSVVCELER SSGVVTAVRV HFVDE // ID A0A078IVK2_BRANA Unreviewed; 314 AA. AC A0A078IVK2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC07g48930D protein {ECO:0000313|EMBL:CDY53003.1}; GN Name=BnaC07g48930D {ECO:0000313|EMBL:CDY53003.1}; GN ORFNames=GSBRNA2T00008303001 {ECO:0000313|EMBL:CDY53003.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY53003.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY53003.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033151; CDY53003.1; -; Genomic_DNA. DR EnsemblPlants; CDY53003; CDY53003; GSBRNA2T00008303001. DR Gramene; CDY53003; CDY53003; GSBRNA2T00008303001. DR OMA; VHRKKRM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 35452 MW; A275D30E4B152C38 CRC64; MGEAGYAHDV ETKVSALMAS VDHLPIFGSG SGHDNGYLSA SVPLLGVNWK KRRMPRQRRS SSSFNLLSFP TLPPSSHVPT HLPARKIDTG KLRFLFQKEL KNSDVSSLRR MILPKKAAEA HLPALEYKEG IPLEMEDLDG LHVWTFKYRF WPNNNSRMYV LENTGDFVST HCVQPGDFIM FYQYLDSCNY VIQAKNAYEE EEDITNVEED DVYTNLTRIE NTVLNDLPLP DYNQHYNNNN NNEKCSYVYP AFDDVTATTT NAPFVYDTTA LSSNDTPLDY LGGPATTTST NSYYSELGPF EGFGSVENIS LDDF // ID A0A078IVU4_BRANA Unreviewed; 567 AA. AC A0A078IVU4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC04g53900D {ECO:0000313|EMBL:CDY54111.1}; GN ORFNames=GSBRNA2T00013389001 {ECO:0000313|EMBL:CDY54111.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY54111.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY54111.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033279; CDY54111.1; -; Genomic_DNA. DR EnsemblPlants; CDY54111; CDY54111; GSBRNA2T00013389001. DR Gramene; CDY54111; CDY54111; GSBRNA2T00013389001. DR OMA; VNADNKF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 460 538 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 110 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 567 AA; 64608 MW; 0FDC94C9E6685C93 CRC64; MASGQIMHMQ PGFLATDGTN NYLYNQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPRH ENNIQNINYF TKVLSASDTN KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWSFKH TLRGTPQRHL FTSGWNEFAK GKNLVVGDCF VFLRGENGES RVGIRKSAHH QQHNIPSPVI SKQSMHHGVV ATALNAIERK CMFVVFYKPR SSQFLVNFDK FIDGVNRKFS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS THWKDSEWRS LELQWNEAAT IPRPDKVSPW EIEPLTHSSN ILKSVFLKNK RQSEINDFGL EIGQTSIQSS VSYSFPSISK PNYNEQMVQA MKETSTTTEA ASYRLFGVDL TVPAKTKDPV QPTHSYKKSK ISKIFEEEKV DHIQTKTKVQ LKHGSSAFDM VIDQVCMEGA VERTMDLTVF DGYNQLIDEL ERLFDIKDKL HMHNQWKIVF INADGDMMLL GDDPWPTAQK IFIYSENDAK IVNADNKFAE GDPRLTTTIL PPDVNNN // ID A0A078IW25_BRANA Unreviewed; 474 AA. AC A0A078IW25; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA04g28150D protein {ECO:0000313|EMBL:CDY54211.1}; GN Name=BnaA04g28150D {ECO:0000313|EMBL:CDY54211.1}; GN ORFNames=GSBRNA2T00013605001 {ECO:0000313|EMBL:CDY54211.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY54211.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY54211.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033292; CDY54211.1; -; Genomic_DNA. DR EnsemblPlants; CDY54211; CDY54211; GSBRNA2T00013605001. DR Gramene; CDY54211; CDY54211; GSBRNA2T00013605001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 367 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 372 469 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 367 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 372 469 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 474 AA; 54469 MW; 6DD66179C38FA8B1 CRC64; MVIKHFFKPL LPGFHSHLTI PVAFLKHIEG TNEHHKAKMR SDASKITWEV KIENGRRLTN GWKEFALAHD LRIGDILIFR QEKDLAFHVT LLGPSGCEIQ YESCSEEKNN IGNIPKKKKV KKNPRKETES TLLDPSCFVA YVSPATLRHD KLNLPRSFVR ANGLEKRCGD IVLMNEKCKS WTLALKQELC GNTYIRRGWR SFCSSNGLKT GGLYTFKLIK RGRTSVLRLS STDSELEEES SEGDEVESLS TEPESDEGTP TNLEEEESKM RCRVFFTRSL LLYDRLDLRK SFVRANALET RCGEIVLTNE KGTSWTLNLK QKRSCGNMYI TRGWRRFCRA NGLKAGCFFT FKLIQRGGTL VLRFSSQFDN NFVTLILKPS NLTSYKLFLP LHFTKRHGIN EKTKMTLLDK NGVKWFTNLR SEKTSDRVRL VGGWQKFFEA NCVEIGESIV LKLIWEGDKS CVLKFWSKVK HETG // ID A0A078IW32_BRANA Unreviewed; 276 AA. AC A0A078IW32; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaA04g28160D protein {ECO:0000313|EMBL:CDY54212.1}; GN Name=BnaA04g28160D {ECO:0000313|EMBL:CDY54212.1}; GN ORFNames=GSBRNA2T00013607001 {ECO:0000313|EMBL:CDY54212.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY54212.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY54212.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033292; CDY54212.1; -; Genomic_DNA. DR EnsemblPlants; CDY54212; CDY54212; GSBRNA2T00013607001. DR Gramene; CDY54212; CDY54212; GSBRNA2T00013607001. DR OMA; EDTGPIF; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 178 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 178 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 30118 MW; 694CAADA4FC6CBF5 CRC64; MNNSEKEVKT EADSSSSDHP CPLALVTASN VRKATQKRRG RPPTSPSQKQ FMKLKLAHDS LIRGRQYLSV PFMRANGMTK PGMITLVGKD GVKWKVNLKE EASGSALCLG TGWKEFAKAN GLKTGEYFTL ESAWKNEIPM LSLVNTESAS DRKERGESSK AMEKESTDTS SVVQNRVVVT LALETKDVKA CTLNLPSEFV TAIGIKELGT ITFLGKDGMK WWGCLLSENG SVAVGIGWRN FCEANGVKLG ESFSLVLINE EEDTGPIFKF CPNSGN // ID A0A078IZJ1_BRANA Unreviewed; 476 AA. AC A0A078IZJ1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC03g77300D protein {ECO:0000313|EMBL:CDY57886.1}; GN Name=BnaC03g77300D {ECO:0000313|EMBL:CDY57886.1}; GN ORFNames=GSBRNA2T00022789001 {ECO:0000313|EMBL:CDY57886.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY57886.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY57886.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033613; CDY57886.1; -; Genomic_DNA. DR EnsemblPlants; CDY57886; CDY57886; GSBRNA2T00022789001. DR Gramene; CDY57886; CDY57886; GSBRNA2T00022789001. DR OMA; CETPIVE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 147 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 147 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 476 AA; 53886 MW; EBE4E730CCD5836F CRC64; MTIPPKFSLF HHRVITGDKP VLTVDDEFLK KHTKVLLISD SSEKIWKVKL DGSRLAGGGW EEFAKAHSFR DGDVLVFRHD GDEIFHVAVS PRSDSWDIRH HTSPSLVDTD DAVSDDESDD EEEESDDDAG DISVNKKKNK EAGFSCFLRA RVTPYSLIKD RLDLSKDFTV VSFNEHNKPC EIDLVNEKGR KWTLCLSKNS TSGVFYIRRG WVNFCSANGI SQGDICKFKL SENGERPVLR LCPSSNSHEE EEECPEVDAG KKQNTPSQFL TVKLTPSRLQ TGQLYISSVF VNESGIKKSG EITLMNQDGR KWPSYLQMTG QCGSEWFYLR HGWREMCKTN GVKVNDSFVL ELVWEDDDAV LKFCSKVENK GNGSGRPRKK RVCETPIVET EKRKRGRPRV SNTNSSNLRR TQQESLSVSD QVANVKLSIL DTLNTVRQFR ADIEAREKNL EASSLEVDAL GERILGINQI LNNYLL // ID A0A078J025_BRANA Unreviewed; 326 AA. AC A0A078J025; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaCnng33070D protein {ECO:0000313|EMBL:CDY58354.1}; GN Name=BnaCnng33070D {ECO:0000313|EMBL:CDY58354.1}; GN ORFNames=GSBRNA2T00023485001 {ECO:0000313|EMBL:CDY58354.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY58354.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY58354.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033660; CDY58354.1; -; Genomic_DNA. DR EnsemblPlants; CDY58354; CDY58354; GSBRNA2T00023485001. DR Gramene; CDY58354; CDY58354; GSBRNA2T00023485001. DR OMA; DELEHAK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 168 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 168 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 326 AA; 36467 MW; 2581109584C59350 CRC64; MEVSSVDEST TSTCSIYETP AITPAKTSVN LHRMGSGSSV VLDAENGAEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VHRFRGRDAV TNFKDARLDD GEVEFLSSHS KSGIVDMLRK HTYSEELEQS KRRRNGNGNA VRSAVSLFEK AVTPSDVGKL NRLVIPKHHA EKYFPLPPSS NVSVKGVLLN FEDVAGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVSFSRSDG QDQQLYIGWK SRSGSDVETG RVLRLFGVNV SPAGSRNDVV GNKRVVNDTE MLSLVCSKKR RIFHAL // ID A0A078J0P6_BRANA Unreviewed; 320 AA. AC A0A078J0P6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=BnaA04g27480D protein {ECO:0000313|EMBL:CDY58764.1}; GN Name=BnaA04g27480D {ECO:0000313|EMBL:CDY58764.1}; GN ORFNames=GSBRNA2T00025125001 {ECO:0000313|EMBL:CDY58764.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY58764.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY58764.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033697; CDY58764.1; -; Genomic_DNA. DR RefSeq; XP_013746312.1; XM_013890858.1. DR EnsemblPlants; CDY58764; CDY58764; GSBRNA2T00025125001. DR GeneID; 106449050; -. DR Gramene; CDY58764; CDY58764; GSBRNA2T00025125001. DR KEGG; bna:106449050; -. DR OMA; ARVDEDH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36468 MW; D2F0C23F56EC54B0 CRC64; MERKSNDLER SENIDSQNKK MNLEEERPVQ EASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGAMFPR FYSYPYPQIQ ASYERHNLYH RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHVATM ASSRGEKRLR LFGVDMECVR GGRGGGGSVN STEEESSTSG GSISRGGVSM AGVGSPLQLR LVSSDGDDQS LVAMGAARVD EDHHLFTKKG KSSLSFDLDK // ID A0A078J4Z6_BRANA Unreviewed; 221 AA. AC A0A078J4Z6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC05g51360D protein {ECO:0000313|EMBL:CDY59239.1}; GN Name=BnaC05g51360D {ECO:0000313|EMBL:CDY59239.1}; GN ORFNames=GSBRNA2T00025755001 {ECO:0000313|EMBL:CDY59239.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY59239.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY59239.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033743; CDY59239.1; -; Genomic_DNA. DR RefSeq; XP_013748955.1; XM_013893501.1. DR RefSeq; XP_013748957.1; XM_013893503.1. DR EnsemblPlants; CDY59239; CDY59239; GSBRNA2T00025755001. DR GeneID; 106451558; -. DR Gramene; CDY59239; CDY59239; GSBRNA2T00025755001. DR KEGG; bna:106451558; -. DR OMA; PKESSAI; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25501 MW; A257062A6AB6AC8F CRC64; MNMDSAHNEF NKRARLFEDR QKEETRVTHP LIPESNAPLN EGYEGSTTTQ SLFTDSKPEE TPKIPKKRGR KKKNPNPEEI NSSTPENSSK FYKSASDRKR TVTAEERERA ISAAKTYEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGIAGFIKLQ LGEKQWPVRC LYKAGRAKFS QGWYEFTLEN NIGEGDVCVF ELLRTRDFVL KVTAFRVTQY V // ID A0A078J518_BRANA Unreviewed; 327 AA. AC A0A078J518; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaCnng37790D protein {ECO:0000313|EMBL:CDY61361.1}; GN Name=BnaCnng37790D {ECO:0000313|EMBL:CDY61361.1}; GN ORFNames=GSBRNA2T00033750001 {ECO:0000313|EMBL:CDY61361.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY61361.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY61361.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033988; CDY61361.1; -; Genomic_DNA. DR EnsemblPlants; CDY61361; CDY61361; GSBRNA2T00033750001. DR Gramene; CDY61361; CDY61361; GSBRNA2T00033750001. DR OMA; KHTYLEE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 36645 MW; 05BF2904CA441DF9 CRC64; MEVSSVDEST TCTGSICETP AMTSAKSSVN LHRMGSGSSV VLDSENGVEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VYRFRGRDAV TNFKEARLDD GEVEFLSSHS KAEIVDMLRK HTYSEELEQS KRRRNGNGNT ARTMTSAEAL FEKAVTPSDV GKLNRLVIPK HHAEKHFPLP SSNVSVKGVL LNFEDVTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLL AGDVVSFSRS EGQDQQLYIG WKSRSGPDVE TGRVLRLFGV NISPESSRTE VVGSKRVNDT EMLSSVCSKK QRIFHAS // ID A0A078J5H6_BRANA Unreviewed; 206 AA. AC A0A078J5H6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaCnng32580D protein {ECO:0000313|EMBL:CDY57957.1}; GN Name=BnaCnng32580D {ECO:0000313|EMBL:CDY57957.1}; GN ORFNames=GSBRNA2T00022885001 {ECO:0000313|EMBL:CDY57957.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY57957.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY57957.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033619; CDY57957.1; -; Genomic_DNA. DR EnsemblPlants; CDY57957; CDY57957; GSBRNA2T00022885001. DR Gramene; CDY57957; CDY57957; GSBRNA2T00022885001. DR OMA; ESRCLRQ; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 133 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 206 AA; 23832 MW; 95EEAC653611E498 CRC64; MGKLMLSKYQ SFFYYMEQNG WDRDNGLGDD ELLTCSRTRM LRPCNHCFVE TRENKGESRC LRQAQKLPVG GRLKQKRELA NLGNKQVKEA EKSNKCKKRK VDTDYDDDSE ASGTSSLVPE FTLNQKEIIR PGVPKMFAEM HMPKEETVFK FHDPKQNKSW YVVSKIQSRF SRGWPGLVKD FGLKVGDVCT FELIKPTEMI LTVDSM // ID A0A078J6T8_BRANA Unreviewed; 318 AA. AC A0A078J6T8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=BnaA04g27470D protein {ECO:0000313|EMBL:CDY58763.1}; GN Name=BnaA04g27470D {ECO:0000313|EMBL:CDY58763.1}; GN ORFNames=GSBRNA2T00025123001 {ECO:0000313|EMBL:CDY58763.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY58763.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY58763.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033697; CDY58763.1; -; Genomic_DNA. DR EnsemblPlants; CDY58763; CDY58763; GSBRNA2T00025123001. DR Gramene; CDY58763; CDY58763; GSBRNA2T00025123001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 318 AA; 36200 MW; F2970B2AC67AE161 CRC64; MERKSNDLER SENIDSQNKK MNLEEERPVQ EASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGAMFPR FYSYPYPQIQ ASYERHNLYH RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHVATM ASSRGEKRLR LFGVDMECGR GGRGGGASVN STEEESSTSG GSISRGGVSM AGVGSLLQLR LVSSDGDDQS LVAMGAANED HHLFTKKGKS SLSFDLDK // ID A0A078J797_BRANA Unreviewed; 433 AA. AC A0A078J797; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaA01g34850D protein {ECO:0000313|EMBL:CDY60859.1}; GN Name=BnaA01g34850D {ECO:0000313|EMBL:CDY60859.1}; GN ORFNames=GSBRNA2T00030135001 {ECO:0000313|EMBL:CDY60859.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY60859.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY60859.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033921; CDY60859.1; -; Genomic_DNA. DR EnsemblPlants; CDY60859; CDY60859; GSBRNA2T00030135001. DR Gramene; CDY60859; CDY60859; GSBRNA2T00030135001. DR OMA; ERCCEID; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 111 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 237 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 111 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 237 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 397 424 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 433 AA; 48947 MW; CF5BA1EC576BECF0 CRC64; MATSPKSNAP FFVISLAGHN SSPLIPEAFF ATKNKSTKLK LTSDACDTTW QVKLNGRGFA DGWEDFSNAH CLRNDDVLLF REDGEMIFHT WDKVSDLRTR IKAESSSTEN SCILGVTSSN LRLNRVALTK SFTKANGLHK SWCEINVMNQ SGKSWVMGLR HNKGTGQDYM RGGWRSFCRA NKLKTGSFYR FELVRTGTRP ALKLCSDNTP QRKCSKAKVS TNPNREGERS SMNRRKFMTV TLKPYMLKSR QLHFQNSFAR ENGIKKGGKI NLVDKNGGRW PSCVASGYVN GGFYLAKGWI SFCEASGINT GETFTLKFVR EKGKTPMLQF FSKAKTKVNT ETRFQKKARV SVEGEPSRRT QASHKSTVDT NNVECKQPLE TIYHQVRQSI VNVLADVRRF LSELEIKEQN LEAVLEEFDA LGEKVSEVNK FFK // ID A0A078J9S5_BRANA Unreviewed; 492 AA. AC A0A078J9S5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA01g34820D protein {ECO:0000313|EMBL:CDY60855.1}; GN Name=BnaA01g34820D {ECO:0000313|EMBL:CDY60855.1}; GN ORFNames=GSBRNA2T00030132001 {ECO:0000313|EMBL:CDY60855.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY60855.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY60855.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033921; CDY60855.1; -; Genomic_DNA. DR EnsemblPlants; CDY60855; CDY60855; GSBRNA2T00030132001. DR Gramene; CDY60855; CDY60855; GSBRNA2T00030132001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 157 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 293 394 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 157 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 293 394 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 492 AA; 55129 MW; C91AA3A9AFD75C7A CRC64; MVVPPPKPSL FQLTFLTGDK PLLTLDDEFL RSHTKVLLIS EASDKIWEVK LDGNRLAGGW EEFAAVSNFS HGDVLVFRHN GEEIFHVAVS SESDDDESDD TDDSESDESN DTDDSESDES NDTDDSESDD SEDNDEGDSS LVNKSEKPEA DTSSDCFLRA RVTPYSLTKD RLDLSRDFKF MSFDEHKKPF EIYLANEKGR KWTLRLSRNI SSGAFYITRG WANFCSANGL SRGDFCYFKL SESGERPVLL LCSHESGNGH EDKEEEEECP EADAVKICSV GGCSNEKSTP SRFLTRKFTP SRFKTGQLYI SMLSSGVLRE SGIKKSGEIT LMDNDGRKWP SYLHKTGQSG GEWCYIRKGW REMCEANGVD VNDSFVLELI CEDANPIFKL HSKIKNKGKG NIVTSKKRAL HARTAEKTPG VEIDGERGSK RGRTRGSQPE SCSVSDQVAN VRQSIQDTLD TIRHFRAELE TREKNLEASL LEVDDLDSNH LI // ID A0A078JAE6_BRANA Unreviewed; 476 AA. AC A0A078JAE6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaA01g34830D protein {ECO:0000313|EMBL:CDY60857.1}; GN Name=BnaA01g34830D {ECO:0000313|EMBL:CDY60857.1}; GN ORFNames=GSBRNA2T00030133001 {ECO:0000313|EMBL:CDY60857.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY60857.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY60857.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033921; CDY60857.1; -; Genomic_DNA. DR RefSeq; XP_013666967.1; XM_013811513.1. DR EnsemblPlants; CDY60857; CDY60857; GSBRNA2T00030133001. DR GeneID; 106371441; -. DR Gramene; CDY60857; CDY60857; GSBRNA2T00030133001. DR KEGG; bna:106371441; -. DR OMA; SEDFKVM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 279 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 279 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 436 463 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 476 AA; 53526 MW; 3216516BED2F86F4 CRC64; MVVPPKPSLF HWRFLTGGKP LLTLDTEFLR NHTKVLLTSD ASDKTWKVKL DGNRLAGGWE EFAAVNSFSD GDVLAFRHNG DEIFHVAVSS ESDDNESDDT DDSESDESDD VEDEDNDEGD ILVEKNKKPE ADSSSCDSCF LRASVTPSSL IDDRLDFSED FKVMSFNKQT KPCEIYLVNE KGRKWTLILS RNISSGAFNI RRGWANFCSA NGLSQGDICN FKLSESGERP VLLLCSHESG NGHEDKEEEE EEEECPEADA VKICSVGGCS KEKNTTSRLL TSEFTPNRFK TGQLTISSVF LRESGINKSM EITLLNKDGR KWSSYLHMSG QRGCEMFYMR KGWREMCKAN GVEVNDSFVL ELICEDANPI FKFHSKIENK EKGNTVEKTP EVSKRGHARV LNRSNSNLKR KQPESCSVSD QVANVKQSIL DTLNTIRHFR AELETRENNL EASLQEVDDL GERILGISKI LNNNLV // ID A0A078JAP5_BRANA Unreviewed; 846 AA. AC A0A078JAP5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA08g31250D {ECO:0000313|EMBL:CDY62586.1}; GN ORFNames=GSBRNA2T00036420001 {ECO:0000313|EMBL:CDY62586.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY62586.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY62586.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034165; CDY62586.1; -; Genomic_DNA. DR RefSeq; XP_013740901.1; XM_013885447.1. DR EnsemblPlants; CDY62586; CDY62586; GSBRNA2T00036420001. DR GeneID; 106443862; -. DR Gramene; CDY62586; CDY62586; GSBRNA2T00036420001. DR KEGG; bna:106443862; -. DR KO; K14486; -. DR OMA; DEWATIL; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 740 824 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 846 AA; 93816 MW; 9D7B9485A17F1032 CRC64; MGSLACGEDK MKTNGLVNGG TTTSTTSQST LLEEMKLLKD QSGTRKPVIN SMLWHACAGP LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVLPV PDLGLLRGSK HPSEYFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFFNPRA CPAEFVIPLP KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGENDWGSLI KRPLPYATFP NMASEQLMKM MMRPHNNQNA VTSFMPEMQQ NVLMGHGGLL GDVKMQQPMV MNQVVQVQPD NNNPSVSNTS GQEQNLSQSM NAPTNLENSS GRVNHGNEEL SEKPSALSPL QADPSPEQIY PPQQSDPTNG FSFLETEEMT SQVSSFQSLA GSYKQPLMLS SNESSPIVLP DSTNSFQDMW DNQLNGLKFD QFSPLMQQED LYGCQNMCMS NSTNSNILDP PPLSNTVLDD FCAIKETEFH SLVGNNNSFA QDVQSQITSA SFADSQAFSR QDNSGGTGGT SSSNVDFDDT SLLQQNSKGS WQKLATPRVR TYTKVQKTGS VGRSIDVTSF RDYEELKTAI ECMFGLEGLL TRPKTSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIRIL SPTEVQQMSE EGMKLLNSAC INDLKT // ID A0A078JAY4_BRANA Unreviewed; 861 AA. AC A0A078JAY4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaC07g48490D {ECO:0000313|EMBL:CDY61164.1}; GN ORFNames=GSBRNA2T00030648001 {ECO:0000313|EMBL:CDY61164.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY61164.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY61164.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK033962; CDY61164.1; -; Genomic_DNA. DR RefSeq; XP_013707335.1; XM_013851881.1. DR RefSeq; XP_013707336.1; XM_013851882.1. DR RefSeq; XP_013707337.1; XM_013851883.1. DR EnsemblPlants; CDY61164; CDY61164; GSBRNA2T00030648001. DR GeneID; 106411172; -. DR Gramene; CDY61164; CDY61164; GSBRNA2T00030648001. DR KEGG; bna:106411172; -. DR KO; K14486; -. DR OMA; DYDPMRW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 752 836 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 861 AA; 95408 MW; 2C934D7ADE0F8D20 CRC64; MMASLACVED KMKTNGLVNG GTTPATSQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP LVSLPQVGSL VYYFPQGHSE QVAVSTRRSA TSQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVFPV PEFGLLRGSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA CPAEFVIPIA KYRKAICGSQ LSVSMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGETEWGSLI KRPFIRVSDS TNGILPYASF PNMASEQLMR MMMRPHNSNN QNATTSFMSE MQQQNVLMGQ GGLLGDMKMQ QQPMVMNPES KLTVNPSASN TSGQEQNLPT QSMHAHSISE KPTLSGCSSG RASHGNEQQS MEQANQVCNE EKVNELMQKP VALSPCPDIS QQIYPPTNGF SFLETEELTS QVSSFQSLAG SYKQPLMDSS AVALPDTTNS SLFHDVWDNQ LNGLKFDQFS PLMQQDLYGN NSTNSNILDP PPPLSNTVLD DFCAIKETDF QMIGNNNTSF TQDVQSQITS ASFADNSGGT GTSSSNVDFD DSSLLQNSKG SWQKKLATPR VRTYTKVQKT GSVGRSIDVT SFRDYQELKS AIECMFGLEG LLTRPQSSGW KLVYVDYESD VLLVGDDPWE EFVGCVKCIR ILSPTEVQQM SEEGMKLLNS ACINDLKTSV P // ID A0A078JDE1_BRANA Unreviewed; 228 AA. AC A0A078JDE1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaC01g44850D protein {ECO:0000313|EMBL:CDY62470.1}; GN Name=BnaC01g44850D {ECO:0000313|EMBL:CDY62470.1}; GN ORFNames=GSBRNA2T00036312001 {ECO:0000313|EMBL:CDY62470.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY62470.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY62470.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034149; CDY62470.1; -; Genomic_DNA. DR EnsemblPlants; CDY62470; CDY62470; GSBRNA2T00036312001. DR Gramene; CDY62470; CDY62470; GSBRNA2T00036312001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 26561 MW; 3E74C78AF626C3B3 CRC64; MSGNHYSRDI QHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST SSYPNIHQEY SHYGKTLYLL SQFVFCYFSL IHVSDIYTLS VFKDMCHR // ID A0A078JDF2_BRANA Unreviewed; 486 AA. AC A0A078JDF2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=BnaA08g30700D protein {ECO:0000313|EMBL:CDY65658.1}; GN Name=BnaA08g30700D {ECO:0000313|EMBL:CDY65658.1}; GN ORFNames=GSBRNA2T00047942001 {ECO:0000313|EMBL:CDY65658.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65658.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY65658.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034880; CDY65658.1; -; Genomic_DNA. DR EnsemblPlants; CDY65658; CDY65658; GSBRNA2T00047942001. DR Gramene; CDY65658; CDY65658; GSBRNA2T00047942001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 279 379 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 279 379 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 486 AA; 54867 MW; 6C49669F7DD216BA CRC64; MTIPPTFSLF HHRFITGDKP VLTVDDEFLR KHTKVLLISD SSDKIWKVKL DGSRLAGGGW EEFAKAHSFR DGDLLVFRHD GDEIFHVSVS PRSDSCDISH HASPSLVDTD DVETDDDYSE SDDGEDEYDD DDDGGEDDAG NIMVNKNTKA GFSCILRARV TPYSLIKDRL DLSKDFTVVS FNEHNKPCEI DLVNEKGRKW TLRLSKNSTS GVFYIRQGWV NFCSANGLSQ GDICKFKLSE NGERPVLRLC PSSNSHEEEE ECLEADARKG KKKNTPSQFL TVKLTPNRLQ TGQLYISSVF VNESGIKKSG EITLMNQDGR KWPSYLQMTG QCGSEWFYLR HGWREMCKAN GVKVNDSFVL ELIWEDDNPV FKFCSKAENK GNGNGRLRKK RACETSIVET ERRKRGRPRV SNTNSSNLQR TRQESCSVSD QVASVKLSIL DTLNTVRQFR ADIEAREKNL EASSLEVDAL AERILGISQI LNNNPV // ID A0A078JF09_BRANA Unreviewed; 661 AA. AC A0A078JF09; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaA01g35830D {ECO:0000313|EMBL:CDY65065.1}; GN ORFNames=GSBRNA2T00044118001 {ECO:0000313|EMBL:CDY65065.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65065.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY65065.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034646; CDY65065.1; -; Genomic_DNA. DR EnsemblPlants; CDY65065; CDY65065; GSBRNA2T00044118001. DR Gramene; CDY65065; CDY65065; GSBRNA2T00044118001. DR OMA; KRWQVVY; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 73468 MW; F29961C553EF952B CRC64; MAASNHPSGK PGGALSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE ADQSEPMSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRQNEELRVG VRRHMRQQTN IPSSVISSHS MHIGVLATAA HAITTGTIFS VFYKPRTSRS EFIVSVNRYL EAKNQKLAVG MRFKMRFEGE EAPEKRFSGT IVGVQENKSS VWHDSEWRSL KVQWDEPSSV FRPERVSPWE LEPLVANNTL SAHLPPQRNK RPRPPGLLSP TTAPSTPDGV WKSPADNPSS VPLFSPPAKT AAFGLGGNKS FGVSIGSAFW PTHADGAAES FASALNNESP TEKKQTNGNV CRLFGFELVE NMNVDECFSA ASVSGAVAVD QPVPSNEFDS GQQSESLNIN QANLPSGSGD HEKSSLRSPQ KSQSRQIRSC TKVHMQGSAV GRAVDLTRSE CYEDLFKKLE EMFDIKGELL ESTKKWQVVY TDDEDDMMMV GDDPWNEFCG MVRKIFIYTP EEVKKLSPKN KLTVNVRMQP KTDADENGNT EGRSSSMAGS R // ID A0A078JGT0_BRANA Unreviewed; 293 AA. AC A0A078JGT0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaAnng19510D protein {ECO:0000313|EMBL:CDY64647.1}; GN Name=BnaAnng19510D {ECO:0000313|EMBL:CDY64647.1}; GN ORFNames=GSBRNA2T00042488001 {ECO:0000313|EMBL:CDY64647.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY64647.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY64647.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034510; CDY64647.1; -; Genomic_DNA. DR EnsemblPlants; CDY64647; CDY64647; GSBRNA2T00042488001. DR Gramene; CDY64647; CDY64647; GSBRNA2T00042488001. DR OMA; VKEYPLA; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 189 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 189 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33373 MW; D5180C1F4A169AA2 CRC64; MDMNNWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKENLA NKMVIIAKWG SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEVVR PPTMASSSGI KQEQGASMEG VEFEATEKKA EESKKKIKIK KVVNSVEIGE SSRGVKKVKR GRVRVKNGVP EFEMTIKRSG LGHVTIPNLF KKHIPNEQTM FTIHSKGSGG GSWEVWCLVR EAQATFSRGW SKLAREYPLE IGDKCTLQLI KPNECVLTID SNKAKEEEIT VID // ID A0A078JGZ9_BRANA Unreviewed; 300 AA. AC A0A078JGZ9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaCnng48570D protein {ECO:0000313|EMBL:CDY65750.1}; GN Name=BnaCnng48570D {ECO:0000313|EMBL:CDY65750.1}; GN ORFNames=GSBRNA2T00048158001 {ECO:0000313|EMBL:CDY65750.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65750.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY65750.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034933; CDY65750.1; -; Genomic_DNA. DR EnsemblPlants; CDY65750; CDY65750; GSBRNA2T00048158001. DR Gramene; CDY65750; CDY65750; GSBRNA2T00048158001. DR OMA; CPTESNH; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 33252 MW; F9EF8102317928B5 CRC64; MNNSETKVKT EADSSSSDHP CPLALVTASN VRKDTQCLRQ DLCPTESNHD GTQGDNNKKK RRGRRPPTSP SQKQFMKLKL AHDSLIKYRQ YLSVPFMRAN GMTKPGLITL VGKDGVKWKV NLYEERSGSS LCLGKGWKEF AKANGLKTGE YFTLELVWEN EIPMLSLVNT ESASDRKQRG EPSKAMEKER STDTSSIVQN RVVTLALETK DVKACTLHLP SEFVTAIGIK KLGKITLLGK DGMKWWGCLL SRDGTVAVGI GWRNFCEANG VKLGDSFSLV FINEEEDTGP VFKFSPNSGN // ID A0A078JH12_BRANA Unreviewed; 360 AA. AC A0A078JH12; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC05g50460D protein {ECO:0000313|EMBL:CDY66878.1}; GN Name=BnaC05g50460D {ECO:0000313|EMBL:CDY66878.1}; GN ORFNames=GSBRNA2T00056765001 {ECO:0000313|EMBL:CDY66878.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY66878.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY66878.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK035547; CDY66878.1; -; Genomic_DNA. DR EnsemblPlants; CDY66878; CDY66878; GSBRNA2T00056765001. DR Gramene; CDY66878; CDY66878; GSBRNA2T00056765001. DR OMA; RERNHYE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 41210 MW; 5814908E13467973 CRC64; MDNFLPFSSS NANSVEELSM DLNNNRSRLS TFPTYDHHHQ AQHHSLQPYS YVACPVDQTA AMNPQISVIQ TGSEFGSLVC NPGFRQARGG FLDPHTAKMA RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY SSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVE MRDADSMQNW SFKYKFWSNN KSRMYVLENT GEFVAEKRVE IGDFLTIYED ESKNLYFSIR KHADKPNEGR EDESMEANDM NFYEDIAFDF IPKDEDEDSI AMLIGNLNDH YPNPNNLMDL PIDLHQHHQA TSSLPPVDYM TNPQYSGSSN DHMSFNDFVW // ID A0A078JIH1_BRANA Unreviewed; 150 AA. AC A0A078JIH1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 12-APR-2017, entry version 16. DE SubName: Full=BnaC03g71880D protein {ECO:0000313|EMBL:CDY67348.1}; GN Name=BnaC03g71880D {ECO:0000313|EMBL:CDY67348.1}; GN ORFNames=GSBRNA2T00062787001 {ECO:0000313|EMBL:CDY67348.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY67348.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY67348.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK036008; CDY67348.1; -; Genomic_DNA. DR EnsemblPlants; CDY67348; CDY67348; GSBRNA2T00062787001. DR Gramene; CDY67348; CDY67348; GSBRNA2T00062787001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 124 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 150 AA; 17171 MW; CF4EE17E8968896F CRC64; MSTTRTTPVQ EPTETGASGS GNNNFNSAVG EHMFDKVLTP SDVGKLNRLV IPKQHAENYF PLEDNQTGTV LDFEDRTGKI SQSYVMTKGW CRFVKEMKLE SGDIVSFHRG YVPDDNEPEK RKNIFFIDWR HRANTNLVHN INYHHYPLLG // ID A0A078JII4_BRANA Unreviewed; 290 AA. AC A0A078JII4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaA02g35370D protein {ECO:0000313|EMBL:CDY65197.1}; GN Name=BnaA02g35370D {ECO:0000313|EMBL:CDY65197.1}; GN ORFNames=GSBRNA2T00045367001 {ECO:0000313|EMBL:CDY65197.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65197.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY65197.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034688; CDY65197.1; -; Genomic_DNA. DR EnsemblPlants; CDY65197; CDY65197; GSBRNA2T00045367001. DR Gramene; CDY65197; CDY65197; GSBRNA2T00045367001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 32832 MW; 428587C3317500A0 CRC64; MVFTPYPDFL IIFNSKDVSL SQRLVLPSDY RQYYPAPLPQ TAVLRKPEGN FWTVKWAISQ EEEISFGDGW SKFIAENDPI DGDFLQFSYD GSRSFLVSIF RNGLPVKPTA PVTIQDISDD DEDKTAGDGD EKKEEEDYDQ NMIISLSLGS SDEDYDADKT VSEVNKADGT LKRGSSSQRI RAQSIGDPEM YLDDPKNPCF IATSSSCRRM LVIAMQVIKD YDLKFDGTIK FIDGFGELEG KIGNWKDRVV VYSWQEIYNR NHAKPGDVII CEILREGGVV RSIKAHFVKK // ID A0A078JIK2_BRANA Unreviewed; 280 AA. AC A0A078JIK2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaAnng24200D protein {ECO:0000313|EMBL:CDY67388.1}; GN Name=BnaAnng24200D {ECO:0000313|EMBL:CDY67388.1}; GN ORFNames=GSBRNA2T00062879001 {ECO:0000313|EMBL:CDY67388.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY67388.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY67388.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK036053; CDY67388.1; -; Genomic_DNA. DR EnsemblPlants; CDY67388; CDY67388; GSBRNA2T00062879001. DR Gramene; CDY67388; CDY67388; GSBRNA2T00062879001. DR OMA; HFPEFIN; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 31692 MW; CF5D69C2166F8F4F CRC64; MSESEEDVDL PRFFKVFLSE TASESMAIPM SFIEHLEDPL PQTAKLQGIG GGVWTVSFKK IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGRSGCKEIR AEVETVELSD ANSDKEEEDS SVVADSNEEE EEGDDDSSFI AGEDDEVSQS LSHVDSDDTV SNAEGFSNLE VESNPCFTTT LKNRIYELLI PANVVKEHGL TFCDRIKYID GEGIMHGAKG KWSDDRICFK GWDRICRRNR LKERDTVHCE MFHIRNKVHT IKIRVTRGRG // ID A0A078JIZ8_BRANA Unreviewed; 1033 AA. AC A0A078JIZ8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaCnng48580D protein {ECO:0000313|EMBL:CDY65751.1}; GN Name=BnaCnng48580D {ECO:0000313|EMBL:CDY65751.1}; GN ORFNames=GSBRNA2T00048159001 {ECO:0000313|EMBL:CDY65751.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65751.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY65751.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034933; CDY65751.1; -; Genomic_DNA. DR EnsemblPlants; CDY65751; CDY65751; GSBRNA2T00048159001. DR Gramene; CDY65751; CDY65751; GSBRNA2T00048159001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 178 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 398 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 654 747 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 786 883 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 931 1028 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 178 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 398 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 654 747 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 786 883 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 931 1028 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1033 AA; 119411 MW; 86AA5F3E6CCAE69D CRC64; MNNSEKEVKT EADSSSSDHP CPLALVTASN VRKATQCRER RPPTSPSQKQ FMKLKLAHDS LIRGRQYLSV PFMRANGMTK PGLITLVGKD GVKWKVNLKE EGSGSALCLG TGWKEFAKAN GLKTGDYFTL ESAWKNEIPM LSLVNTESAS DRKERGESSK AMEKERSTDT SSIVQNRVVT LALETKDVKA CTLTIPVAFL KHIEGTNEHH KAKMRSDASK ITWEVKIENG RRLTNGWKEF ALAHDLRIGD ILIFRQEKDM AFHVTLLGPS GCEIQYESCS EEKNNIGEFC VLSPSCFVAY VSPATLRHDK LNLPRSFVRA NGLEKRCGDI VVMNEKSKSW TLALKQELCR NKPKNKFFRQ NRKINFLIET KTEFSHRNRK IEFSHQNRKT EFSRQNKNEF SRRNRKTEFP AKNEKPNCSR QNRKQVSRQN LTNFPAKTVK TSFSAKTAKT SFSAKTRKII FPANHKNLFS RRNRKTEFSR QNRKIEFFRQ NKNEFSRRNR KTEFFRQKRK IEFSRQKRKI EFSRQNRKTD KNRKTEFFRQ KFAKRLFPPK SKTGFPPKLT NFPAKTVKTS FFRQNCKNET YENSTENMDQ PNQTWRIVCE ANGLKLGKSF TLEIINEHDK AAPVFNWVIT LFSPRIEVYS SRDSELLKFM RMPNKRFFKP LLPGFHSHLT IPVAFFLKYI EGTNEHHTAK LRSDASKITW EVKIEDGQKL TDGWKEFAIA HDLRIGDILM FRQEKDMAFH VTLLGPSGCE FQYESCSEEE NNLGRNIPKK KNLEREAESS SLDPSCFLAT IWPSSLRYDT LNLPRSFVRS NGLETRCGGE IVLMNEKGKS WTLALKQKLS GSTYIRRGWR RFCSANVLKT GGVYTFKLIH SGRTPVLRLF FTESESESEE RNVEKIQRKK AESSSLDPSS FVANNPTSTW KASSSQSQNR FLTLALKPFN LEKYILYFPV RFSRSHGINE EAKMTLLDKN GVKWSTDLRS EETSDRIRLV GGWQEFFKTN CMKPGESIIV KLIWEGDKSC VLKFCSKVKN ETK // ID A0A078JJX0_BRANA Unreviewed; 350 AA. AC A0A078JJX0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaC03g73290D protein {ECO:0000313|EMBL:CDY65647.1}; GN Name=BnaC03g73290D {ECO:0000313|EMBL:CDY65647.1}; GN ORFNames=GSBRNA2T00047925001 {ECO:0000313|EMBL:CDY65647.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65647.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY65647.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034876; CDY65647.1; -; Genomic_DNA. DR EnsemblPlants; CDY65647; CDY65647; GSBRNA2T00047925001. DR Gramene; CDY65647; CDY65647; GSBRNA2T00047925001. DR OMA; VMANGIK; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39883 MW; 23DBB2D6B9931AEE CRC64; MAHGSASSAI NPHFLQPLLP GFHSHINIPV AFYSKHIKGT TNEVVKLRSD ASDLTWEVKM DGRRLTQGWE KFATGHAFQV GDIVIFRHDG DLLFHVTPFG PSCCEIQYND DDDEKYHQQH TREAGSSSDN SCFVARVTES NLKKDALFLP QHFSRSNGFV NRECEIILLN EDGEPWTLLM KYYKTSGHVY IRRGWISFCQ ANRKRANDVL TFKLVQTGRK PVLQLRASVY NNRASTSFSS TSQDRFVTLT LKQYHLKSCK LSLPVAFVMA NGIKNVRKII LVDRYGVRRT TSLKPDDKYG RMRLGQGCIK FCVASGVKAG ESFRLELIKE KEEDTVNHLL KFCYTVLYSL // ID A0A078JKD8_BRANA Unreviewed; 281 AA. AC A0A078JKD8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaC05g51390D protein {ECO:0000313|EMBL:CDY65812.1}; GN Name=BnaC05g51390D {ECO:0000313|EMBL:CDY65812.1}; GN ORFNames=GSBRNA2T00048280001 {ECO:0000313|EMBL:CDY65812.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65812.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY65812.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK034961; CDY65812.1; -; Genomic_DNA. DR EnsemblPlants; CDY65812; CDY65812; GSBRNA2T00048280001. DR Gramene; CDY65812; CDY65812; GSBRNA2T00048280001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 101 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 173 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 101 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 173 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 32116 MW; C6897368A648E05E CRC64; MTETSTSSNP VLPLKKRKRP VDDTTDNVLA VATKKVAPLG NSKYKGVVEH HRNGHWGAQI YIDHKRIWLG TFKSSVEAAM AYDSASIKLG SFDANCHRNF PLNASTVHEP NFQKGYTTEA VLEMIKDSSY QQKFKDYLSL PFHNVASINL VGSERVQGDQ DSTQYCLTCA ELFRKGLTPS DVGKLNRLVI PKRHAVKYLP FINEREEGEI VEDVEVVFFD KTMKQWKFRY CYWTSSQSFV FTSGWKRFVK TENFVNSKLK EEETKSVENK GGFMLFGVKI Q // ID A0A078JLM8_BRANA Unreviewed; 531 AA. AC A0A078JLM8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaAnng25060D {ECO:0000313|EMBL:CDY67714.1}; GN ORFNames=GSBRNA2T00066057001 {ECO:0000313|EMBL:CDY67714.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY67714.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY67714.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK036424; CDY67714.1; -; Genomic_DNA. DR EnsemblPlants; CDY67714; CDY67714; GSBRNA2T00066057001. DR Gramene; CDY67714; CDY67714; GSBRNA2T00066057001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 452 531 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 60771 MW; BD5FED4357B5F6CF CRC64; MENNKIRNAQ PKFQGTDETN RYMYNQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQAHLVA SENDNLCQLK PIFDISSKIR CNVISIKLKV DTNTDEVYAK VSLSPCSPVI SIPNGNNEQN INYFTKVLTA SDTSTHGGFS LFKKDAIECL PLLDMSQQAP SQWIVAKDLH DHVWKFKHTF RGTPQRHLFT SGWKQFARKK SLAVGDSVVF LRGENGESRI RIRKAAPQQS NISSSVISEE SMHHGLVATA SNAINTKCMF DVFYRPKSSK FIVNCKKVID AVNMKFNTGS RFTMKFEGHD FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSPWEIE PLIRKNKRQR EINEIGLAMS KPDYNDQMAQ STKENSITNA SSSFRLFGVD LTASTKGRDV LEPLESYQKS KISEIFDEEK LDQIQAVTSL TETQTKKIRF TTSSTKVHME GVVRTVDLTD FDGYNHMIVE LEKLFNIEGK LHMHSQWKLT FKVHEGDMML VGDDSWLKFC NTVNEIFICS K // ID A0A078JMD0_BRANA Unreviewed; 292 AA. AC A0A078JMD0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaAnng27990D protein {ECO:0000313|EMBL:CDY68668.1}; DE Flags: Fragment; GN Name=BnaAnng27990D {ECO:0000313|EMBL:CDY68668.1}; GN ORFNames=GSBRNA2T00076582001 {ECO:0000313|EMBL:CDY68668.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY68668.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY68668.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK037770; CDY68668.1; -; Genomic_DNA. DR EnsemblPlants; CDY68668; CDY68668; GSBRNA2T00076582001. DR Gramene; CDY68668; CDY68668; GSBRNA2T00076582001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 182 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 182 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 292 292 {ECO:0000313|EMBL:CDY68668.1}. SQ SEQUENCE 292 AA; 33079 MW; A6ED43650B4F4458 CRC64; MAKPRLLRPQ FFHALVPGFH THLVNHLSYS LALSRTASLF TVHSYFRLAS QKQESEDEKS RSRSRTTFFF FSDNSCFVAL VTASSLRTDK LYLPQHVTSS NGLTRKCCKI VLVDGGERSW TLDLSFNKSS DTFCMSRGWR NFCEENGQEP GGFFMFKLVG NGETPSLPAL FVRENGINKP GEVHLLGKDG TKWPTSLLVN IRGSMSLGKG WKEFIKANGV ESGFTIKFMW EDTTPVFSLC SADSTSEREQ EEYFKGIKKQ SLFIDPSNID NSSKDENNKE ENMSWEGQKR GR // ID A0A078JPD8_BRANA Unreviewed; 851 AA. AC A0A078JPD8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=BnaCnng54100D {ECO:0000313|EMBL:CDY67247.1}; GN ORFNames=GSBRNA2T00060504001 {ECO:0000313|EMBL:CDY67247.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY67247.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY67247.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK035903; CDY67247.1; -; Genomic_DNA. DR RefSeq; XP_013678280.1; XM_013822826.1. DR EnsemblPlants; CDY67247; CDY67247; GSBRNA2T00060504001. DR GeneID; 106382765; -. DR Gramene; CDY67247; CDY67247; GSBRNA2T00060504001. DR KEGG; bna:106382765; -. DR OMA; AIYRELW; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 704 788 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 95523 MW; 98194F522EBE5CCC CRC64; MEVSVKGNHG GGGENAVSVV SGEGQKSNLN RVVDEEAAIY RELWHACAGP LVTVPRRDDR VFYFPQGHIE QVEASTNQAA EQQMPLYDLP SKLLCRVINV DLKAEVDTDE VYAQITLLPE PNQDENAVEK EAPPPPPPRF QVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELVAKDL HANEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQQ GIVPSSVISS HSMHLGVLAT AWHAISTGTM FTVYYKPRTS PSEFIVPFDQ YMESVKNNYS IGMRFKMRFE GEEAPEQRFT GTIVGIEDSD PTRWAKSKWR SLKVRWDETS SIPRPERVSP WKIEPALAPP ALSPVPMTRP KRPRYNMASS SPDSSMHIKE GSSKVNVYPL PASGLSRVLQ GQEYPTLRTK HTESVECDAP ESSVVWQSSA DDDKVDVASR RYENWMSSGR HEYTDLLSGF GANVDPSQGH QIPFHDHSSS PSVTAKKILS DQDAKFDYLA NQWQMMNSGL SLKLHESPQI PSASDASFQG RGNATYGEYP VLHSLTTETA GGNWPIRPRA LNYFEEAVHA QAREHVTERP QMVQEETAKS RDGNCRLFGI PLVNNVNETD STMSQRNNLN ENSGFTQMAS PKVQDLSDHS KGSKSTNDHR EQGRPSQAKQ PHAKDSHCKT NSNRSCTKVH KQGIALGRSV DLSKFQNYEE LIAELDMLFE FNGELMAPKK DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK IFIYTKEEVR NMNPRTLSCR SEEEAVVGEG SDAKDGKSAS NPSLSSELLN QKNQHTLQAE GDVEAQIRRR V // ID A0A078JQB3_BRANA Unreviewed; 416 AA. AC A0A078JQB3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=BnaUnng03400D {ECO:0000313|EMBL:CDY69758.1}; GN ORFNames=GSBRNA2T00092147001 {ECO:0000313|EMBL:CDY69758.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY69758.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY69758.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK040239; CDY69758.1; -; Genomic_DNA. DR EnsemblPlants; CDY69758; CDY69758; GSBRNA2T00092147001. DR Gramene; CDY69758; CDY69758; GSBRNA2T00092147001. DR OMA; YASSKSM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 315 395 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 26 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:CDY69758.1}. SQ SEQUENCE 416 AA; 47453 MW; BC4DF6045395BC39 CRC64; VSLSPCSPEF EVSIPNGNNE QNINYFTKVL TASDSSTHGG FSLFKKDAIE CLPLLDMSQQ APSQWIVAKD LHDHVWKFKH TFRGTPQRHL FTSGWKQFVR KKSLAVGDSV VFLRGENGES QIGIRKAAPQ QSNISSSVIS KESMHHGLVA AALNAINTKC MFDVFYRPKS SKFIVNCKKI IDAVNMKFNT GSRYSGTIVK VEDLSIYWKD SEWRNLQVQW DEAATIPRPN KVSPWEIEPL IRENKRQREI GLAMSKPDYN DQMVQSTKEN STTNASSSFR LFGVDLTAST KARDVLEPLE SYQKKIQTKK IRFTTSSTKV HMEGVVRTVD LTDFDGYNHM IVELEKLFNI EGKLHMHSQW KLTFKVHEGD MMLVGDDSWL NKIEDISKYM NAQVEELCKR VDKLTRLHYA SSKSMP // ID A0A078JS02_BRANA Unreviewed; 102 AA. AC A0A078JS02; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaCnng67860D protein {ECO:0000313|EMBL:CDY70338.1}; GN Name=BnaCnng67860D {ECO:0000313|EMBL:CDY70338.1}; GN ORFNames=GSBRNA2T00098193001 {ECO:0000313|EMBL:CDY70338.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY70338.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY70338.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK041826; CDY70338.1; -; Genomic_DNA. DR EnsemblPlants; CDY70338; CDY70338; GSBRNA2T00098193001. DR Gramene; CDY70338; CDY70338; GSBRNA2T00098193001. DR OMA; TKFIFSM; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 102 AA; 12005 MW; A07E87F8A177F6D1 CRC64; MDPDMMTKRV LTDTDLSTQG WLILPTQKIE NIEKNLGFTL PRNGAQVEIL DNDKSYWVNL NKNKAGYYIG QGWKSLRDER DLKTGDVIQL YWKDTKFIFS MW // ID A0A078JS09_BRANA Unreviewed; 329 AA. AC A0A078JS09; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaCnng67970D protein {ECO:0000313|EMBL:CDY70353.1}; GN Name=BnaCnng67970D {ECO:0000313|EMBL:CDY70353.1}; GN ORFNames=GSBRNA2T00098215001 {ECO:0000313|EMBL:CDY70353.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY70353.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY70353.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK041854; CDY70353.1; -; Genomic_DNA. DR EnsemblPlants; CDY70353; CDY70353; GSBRNA2T00098215001. DR Gramene; CDY70353; CDY70353; GSBRNA2T00098215001. DR OMA; NDHCICE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 37292 MW; C8E789844A7D4897 CRC64; MIPISYNDEL PRTLPKTAIL QGTGGCFWKV EMKRKRDEVH FGKGWNKFVT DNSLTDGDFL TFVYNGANVF EVSIYGLGGC KEMRAVIEVE EVKEDSVVSL SSTDSDTSSK SEVANTISKN KGQSQVVEVE DESEEAEAET CSESTVAKTT TGSRNKGKKK EKVVGSSNED SDSDYTEAND DSESDDTEAS DQLNAFSESS NNVAQPKKKR ERVTIKKIKD PEKYLVDPKN VFFETNVKNR PYELLVSAQL VKDYDLKFKK LVYYTDYHKD GKLQAKTTKW KDNRVCIKKW NRICKRNKLK KGDGILCELK RKEGFVYAVR IHIVCEKDL // ID A0A078JSI5_BRANA Unreviewed; 168 AA. AC A0A078JSI5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaC02g46200D protein {ECO:0000313|EMBL:CDY68372.1}; GN Name=BnaC02g46200D {ECO:0000313|EMBL:CDY68372.1}; GN ORFNames=GSBRNA2T00073552001 {ECO:0000313|EMBL:CDY68372.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY68372.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY68372.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK037242; CDY68372.1; -; Genomic_DNA. DR RefSeq; XP_013720050.1; XM_013864596.1. DR EnsemblPlants; CDY68372; CDY68372; GSBRNA2T00073552001. DR GeneID; 106423838; -. DR Gramene; CDY68372; CDY68372; GSBRNA2T00073552001. DR KEGG; bna:106423838; -. DR OMA; FKESKAE; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 165 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 165 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 19415 MW; 03A797F4B3327EA7 CRC64; MATPKILKKR GRKKKNPNPE EVNSSTPRGD DSENRSKFYE SASARMRTVT AEERERGITA AKTYEPTNPF FRVVLRPSYL YRGCIMYLPS GFAEKYLSGI SSFIKIQLGE KLWPVRCPYK AGRAKFSQGW YEFTLENNIG ERDVCVFELL STRDFVLKVT AFRVNQYV // ID A0A078JUD3_BRANA Unreviewed; 352 AA. AC A0A078JUD3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=BnaCnng62390D protein {ECO:0000313|EMBL:CDY69206.1}; GN Name=BnaCnng62390D {ECO:0000313|EMBL:CDY69206.1}; GN ORFNames=GSBRNA2T00083914001 {ECO:0000313|EMBL:CDY69206.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY69206.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY69206.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK038863; CDY69206.1; -; Genomic_DNA. DR RefSeq; XP_013668101.1; XM_013812647.1. DR RefSeq; XP_013668124.1; XM_013812670.1. DR EnsemblPlants; CDY69206; CDY69206; GSBRNA2T00083914001. DR GeneID; 106372432; -. DR GeneID; 106372452; -. DR Gramene; CDY69206; CDY69206; GSBRNA2T00083914001. DR KEGG; bna:106372432; -. DR KEGG; bna:106372452; -. DR OMA; RGDCKET; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 314 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 314 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 39445 MW; 188BB85B4DF3EAD0 CRC64; MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMVKRRDEVY FGQGWSKFVE DNCLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD DDDDKEDTNT SSEPEMAQTV PNATNQEDSN IVEPEVAQRV PRTRSKGKKR VVVQDSDDSF ISEDSDSLSD SSYSPPNDDT LLDVTPKVAN SRKKGQLRSA NSNVGTTSNS SGSVSRKRQS TIKNPEVYLD DPNNVCFEII LKNRIYELTV PKQIVKDYCL KFQAYVCYID NHESGTLEAR VATWQDQRVS IKKWDRICQR NGLKKGDSLL CELFRKEGLV YAVKIHVVTT AS // ID A0A078JUU2_BRANA Unreviewed; 218 AA. AC A0A078JUU2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=BnaAnng36900D protein {ECO:0000313|EMBL:CDY71308.1}; GN Name=BnaAnng36900D {ECO:0000313|EMBL:CDY71308.1}; GN ORFNames=GSBRNA2T00014034001 {ECO:0000313|EMBL:CDY71308.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY71308.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY71308.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK045325; CDY71308.1; -; Genomic_DNA. DR EnsemblPlants; CDY71308; CDY71308; GSBRNA2T00014034001. DR Gramene; CDY71308; CDY71308; GSBRNA2T00014034001. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 218 AA; 25131 MW; E15854FAF164E930 CRC64; MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEIVR PPTMASSSGI KQEQGASMEG VEFEATEKKA EESKRKIKKV VNPVEIGESS RGVKKVKRGR VRVKNGVPEF EITIKRSGLG HVVRFLIYKR FKKLSIKI // ID A0A078JVB1_BRANA Unreviewed; 278 AA. AC A0A078JVB1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=BnaCnng63450D protein {ECO:0000313|EMBL:CDY69432.1}; GN Name=BnaCnng63450D {ECO:0000313|EMBL:CDY69432.1}; GN ORFNames=GSBRNA2T00087759001 {ECO:0000313|EMBL:CDY69432.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY69432.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY69432.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK039422; CDY69432.1; -; Genomic_DNA. DR EnsemblPlants; CDY69432; CDY69432; GSBRNA2T00087759001. DR Gramene; CDY69432; CDY69432; GSBRNA2T00087759001. DR OMA; HPHQFAG; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31567 MW; 4AD3E296D32C2B8D CRC64; MNLEEEKPVE KASSMEREHM FEKVVTPSDV GKLNRLVIPK QHAERYFPLD NSDNNKGLLL NFEDRTGNSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFQRDP GNKEKLFIDW RRRPKIPDHP HQFAGAMFPR FYSFSHPQNL YHRYQQDLGI GYYVRSMERN DSTAVIESVP VIMQRRAAHV AAIPSSRGEK RLRLFGVDME CGGGGSVNST EEESSSSGGG GGVSMASVGS LLQLRLVSSD DESLVAMEAA SVDEDHHLFT KKGNFRFG // ID A0A078K334_BRANA Unreviewed; 326 AA. AC A0A078K334; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=BnaAnng40580D protein {ECO:0000313|EMBL:CDY72302.1}; GN Name=BnaAnng40580D {ECO:0000313|EMBL:CDY72302.1}; GN ORFNames=GSBRNA2T00027433001 {ECO:0000313|EMBL:CDY72302.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY72302.1, ECO:0000313|Proteomes:UP000028999}; RN [1] {ECO:0000313|EMBL:CDY72302.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LK050018; CDY72302.1; -; Genomic_DNA. DR EnsemblPlants; CDY72302; CDY72302; GSBRNA2T00027433001. DR Gramene; CDY72302; CDY72302; GSBRNA2T00027433001. DR OMA; PRENSGV; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 168 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 168 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 326 AA; 36615 MW; D347695173AFCEB6 CRC64; MEVSSVDEST TSTCSIYETP AITPAKTSVN LHRMGSGSSV VLDAENGAEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VHRFRGRDAV TNFKDARLDD GEVEFLNTHS KSEIVDMLRK HTYSEELEQS KRRRNGSGNA FRSAVSLFEK AVTPSDVGKL NRLVIPKHHA EKYFPLPPSS NVSVKGVLLN FEDVAGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVSFSRSDG QDQQLYIGWK SRSGSDVETG RVLRLFGVNI SPAGSRNDVV GNKRVVNDTE MLSLVCSKKR RIFHAL // ID A0A080YTZ0_WHEAT Unreviewed; 463 AA. AC A0A080YTZ0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM86832.1}; GN ORFNames=TRAES_3BF118000010CFD_c1 {ECO:0000313|EMBL:CDM86832.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM86832.1}; RN [1] {ECO:0000313|EMBL:CDM86832.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM86832.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 367 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 367 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 463 AA; 52644 MW; CE4C75837148C6A1 CRC64; MSPSCGRCTR RDVYNYRNSE DENKHFLMLM LGDFQQQMII PKEYVRCLKG EIPGEINLET RNRDSYTIKV AKYQEKHVLT AGWPQFVENF HLQLGDSLLF RYNGDSLFSI IIFDKLGREE ASFVLVDPFP PQVQGRHNEI GSSKRNLFSV SRERSQERLN LKQRINVNTK FKLSRTKKSS LCLQRDGGAC VQKFSLEIRD RIILFRYNGN SRFSVIILDE LGREKASSVV NLLPPRALER HTNGAETVSR HPSDGPVDCS HPLMLMPPPA QFHQQQQAIL MQPPLNHSSS SKSSAGQGDG SFSSHDHVRN ALGFRRVVRR NPTSSQKQQE KDGYITTDKT KLTSAQEQRV KDMVQTIRSR RSGITIFVAL IGKANVHPAF SLTVPITYGE EHFGDGKVIC FQLGEKKWNA CFSSSRNDYR IERGWSTFVK DNSLNIGDIC LLEPLSNQGS TMEVHIIHVN NGN // ID A0A080YUW7_WHEAT Unreviewed; 232 AA. AC A0A080YUW7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM87216.1}; GN ORFNames=TRAES_3BF065400200CFD_c1 {ECO:0000313|EMBL:CDM87216.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM87216.1}; RN [1] {ECO:0000313|EMBL:CDM87216.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM87216.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 232 AA; 26303 MW; 49FF6841099965B2 CRC64; MAGALAYEEQ RRRQMEENDR KLEELGLHQL SAAVREAAGR KPSPVRLEAK SVKPKQVPRD APVRQSSRVA SLPKQPKYRY EVLPPFGITC RTNGRGSSTR SDIINRVDAT DEARLHANSE AQELLRKLVP GGNPSFVKPM KQSHVTGGFW LGLPSHFCGL YLPGSDDTIT LEDEEGVEYK TRYLALKTGL SAGWRRFALD HNLVDGDCLV FEWVVWNTFY VRFLICYYAF RC // ID A0A087FWA5_ARAAL Unreviewed; 307 AA. AC A0A087FWA5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK21907.1}; GN ORFNames=AALP_AAs63571U000500 {ECO:0000313|EMBL:KFK21907.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK21907.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK21907.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK21907.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KL994646; KFK21907.1; -; Genomic_DNA. DR Proteomes; UP000029120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 111 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 307 AA; 34281 MW; 92B3C07AFF573C39 CRC64; MFYAGYLSNE ENGGDDKDNT ELARKKKARM TNLQTKVGPS SSGISCFVAF VTASNLNSDS LYLPIDFTSS DAIKRKYGKI VLTDGRETSW EMDLNIFYEN EKSRVRGQNR FVKLTLTEDC LKSSRLYIPL TFMREHGLNK PGMITLLGKN GMKTAANVRE ESMGRVSLGR GWNDFAKANA LKIDDTFMME LFWDNGTPVL SLLSSESKSH TGFVTLTLTD DNVRKSRVHL PMPFVRANGL VKPGMMTLIS KDGTRSLAKL LRVSSTGRMS LGRGFKEFVI GNGLIIGESF TFELVWENET PMLSLCN // ID A0A087FZ94_ARAAL Unreviewed; 808 AA. AC A0A087FZ94; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK22946.1}; GN ORFNames=AALP_AAs47561U000300 {ECO:0000313|EMBL:KFK22946.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK22946.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK22946.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK22946.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KL983916; KFK22946.1; -; Genomic_DNA. DR Proteomes; UP000029120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 303 404 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 559 609 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 303 404 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 708 744 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 808 AA; 88918 MW; 583968E8447EDFE0 CRC64; MVLKMCMNAS CGSTSTVEWK KGWPLRSGLL ADLCFRCGSA YESCLFCETF HMDQSGWREC FLCSKRLHCG CIASKLMVEL MDYGGVGCAT CANCHQLNLH KRDENPAVFG RLPMKTLADR QHINGESGMN IDGVRNEADL FSQPQRCDSQ PLGLGGDKRE EFMPHRGFGQ LLKPENTTTG YRLDAGEMNG PSPSPSQPSL NMALAVIPYS PSFSTEGIDG KKHIGASQSH MMQCSAPGLL QKPSKSVLTT PAGTSKSAQP RIGRPPVEGR GKGHLLPRYW PKYTDKEVQQ ISGNLNLNIV PLFEKTLSAS DAGRIGRLVL PKACAEAYFP PISQSEGIPL KIQDVRGKEW TFQFRFWPNN NSRMYVLEGV TPCIQSMMLQ AGDTVTFSRV DPSGKLILGA RKAVNAGDMQ VGVSTNWGLK GCGLTNGTST EDTSSSGVTE NPPSINASSC PSQIPKETNG LPQNLTTPHG EINGGRMCDD PPRVKEKKRT RTIGTKNKRL LLHSEESMEL RVTWEETQDL LRPAPSSKPS IVVIEEHEFE EFDEPPVFGK RTIVTSRPSG EQERWASCDD CSKWRRLPVD ALLPFKWTCV DNVWDENRCS CSAPEESLKE LENALKIGKE YKKRRIGESQ GAKNEQEPSG LDALASAAVL GDTLGEPEVA TTTRHPRHRV GCSCIVCIQP PSGKGRHKPN CGCNVCSTVK RRFKTLMMRR KKKQLERDET AAAAEQENKE AKQAETDKNK GDKEGRIDLN SDPYNREDTE AVAVEKEESR RREVGQCSGV APEGGDVVGV TELEGEAEKI HEEPKSSS // ID A0A087FZC0_ARAAL Unreviewed; 212 AA. AC A0A087FZC0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KFK22972.1}; GN ORFNames=AALP_AAs71535U000100 {ECO:0000313|EMBL:KFK22972.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK22972.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK22972.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK22972.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KL983798; KFK22972.1; -; Genomic_DNA. DR Proteomes; UP000029120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 24421 MW; FB2188377549FE42 CRC64; MVTTRKARAR AITASHHQPP AEPKSPVNKF FQLVLPSAMK RNMMRIPTIF AKLKGSKLSK FVTLETPLGF KRSIKLKRIG EEIWFQEGWG EFAEAHSISE GHFLLFEYKG NSSFHIKIFN VSACEIDYPR DTVHISDSDS DDEIIDLTDQ VFLEAQCTRK NEQSVNGGDL VHKPEKRPRD IDFEKILDDV DAIKLLKEEE EDKRVFRGKQ FL // ID A0A087FZQ6_ARAAL Unreviewed; 329 AA. AC A0A087FZQ6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK23108.1}; GN ORFNames=AALP_AAs42262U000200 {ECO:0000313|EMBL:KFK23108.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK23108.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK23108.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK23108.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KL982377; KFK23108.1; -; Genomic_DNA. DR Proteomes; UP000029120; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 210 320 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 329 AA; 36513 MW; 4E6AA874A4688313 CRC64; MANQESSYLS LGSISLPLND VSVSPTKKNE PKAFYLFGTR IPVPSQDETA KKTSEIENIN YKNSMSLFFV SPMKSDQTSN THCSSDVESS KTLSDDISLA SKVTSSSMPH LTDLSMSPMK KNEPGAVYLF GVRISDPPQE SSSLTSTATS KLGHVCFGSN PKEMSLFSAS SSVKTHCFSK GESSKNPKEG FKNDARKIKK TNQTGDLNII TKTLTPSDIN GLSRLLIETD SAERYILRYM SEADQRRIQE GHGVNVRVKD HDTGREHDLV FKRWIKTSRS YVFNGGWRKD FVKRRGLKIG DKIGLIWDGS MLHFRVLSLA APANQENPN // ID A0A087G480_ARAAL Unreviewed; 782 AA. AC A0A087G480; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK24682.1}; GN ORFNames=AALP_AA8G011400 {ECO:0000313|EMBL:KFK24682.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK24682.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK24682.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK24682.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK24682.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 519 569 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 290 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 782 AA; 86475 MW; 73FD87C9269DC5C5 CRC64; MMESTTKVCM NAQCGAPSTS GDWKRGWPMR SGQFAPLCVK CGSAYEQSIF CQLFHAEEPG WRQCHSCDKR LHCGCIASRF MMELLDNGGV TCITCAKKSG FFSINETNGK LENGARELPS FASPEHLGHV LDRTSLKHLL HFQRISPTQS FLHLKQEDNP LLPARLDALR HKTENHEFHP NLSISLGPTL MTSPFHDASV DDTSRNIPIF QLAPRSRQLL PKPANSAPTA PGMDPNGSLV SQIHVARPPP EGRGKTQLLP RYWPRITDQE LQQLSGQYPH LSNSKIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGLPLKIQ DIKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRTEPE GKLVMGYRKA TNTTAAQMFK GSSEPNLNMF SNNLNPGCGD INWSKLEKSE DMAKDHLLLQ SSQIPARKRA RNIGSKSKRL LIDSVDVLEL RLTWEEAQEL LRPPPSAKPS IFTVEDHDFE EYDEPPVFGK RTVFVSRQAG EQEQWVQCDA CGKWRRLPVD TLLPPKWLCS DNLLDPARSS CSAPDELSPR EQDALVRLNK EFKRRRLASS NQEASALNTL ANAAITTTGE QGDIVVAATT KHPRHRAGCS CIVCSQPPSG KGKHKPSCTC TVCEAVKRRF KTLMMRKRNR GEAGQASQQT QSECRDETEV ESIPLVEPAA GGNIDLNSDP GASRVSMMSL LQAATFPLEA YLKQKAMSNT TTPPPTAAVE QQSSDMVSTE HGSSSAAQEP ERDTSGAPEP LS // ID A0A087G481_ARAAL Unreviewed; 778 AA. AC A0A087G481; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK24683.1}; GN ORFNames=AALP_AA8G011400 {ECO:0000313|EMBL:KFK24683.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK24683.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK24683.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK24683.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK24683.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 515 565 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 286 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 778 AA; 85974 MW; C92546603A3F78F9 CRC64; MMESTTKVCM NAQCGAPSTS GDWKRGWPMR SGQFAPLCVK CGSAYEQSIF CQLFHAEEPG WRQCHSCDKR LHCGCIASRF MMELLDNGGV TCITCAKKSG FFSINETNGK LENGARELPS FASPEHLGHV LDRTSLKHLL HFQRISPTQS FLHLKQEDNP LLPARLDALR HKTENHEFHP NLSISLGPTL MTSPFHDASV DDTSRNIPIF QLAPRSRQLL PKPANSAPTA PGMDPNGSLV SQIHVARPPP EGRGKTQLLP RYWPRITDQE LQQLSGHSNS KIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNTT AAQMFKGSSE PNLNMFSNNL NPGCGDINWS KLEKSEDMAK DHLLLQSSQI PARKRARNIG SKSKRLLIDS VDVLELRLTW EEAQELLRPP PSAKPSIFTV EDHDFEEYDE PPVFGKRTVF VSRQAGEQEQ WVQCDACGKW RRLPVDTLLP PKWLCSDNLL DPARSSCSAP DELSPREQDA LVRLNKEFKR RRLASSNQEA SALNTLANAA ITTTGEQGDI VVAATTKHPR HRAGCSCIVC SQPPSGKGKH KPSCTCTVCE AVKRRFKTLM MRKRNRGEAG QASQQTQSEC RDETEVESIP LVEPAAGGNI DLNSDPGASR VSMMSLLQAA TFPLEAYLKQ KAMSNTTTPP PTAAVEQQSS DMVSTEHGSS SAAQEPERDT SGAPEPLS // ID A0A087G4K7_ARAAL Unreviewed; 601 AA. AC A0A087G4K7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA8G027700 {ECO:0000313|EMBL:KFK24809.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK24809.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK24809.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK24809.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK24809.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 601 AA; 66281 MW; 4EAD6464C7196C6C CRC64; MGGLIDLNVM ETEEEETPSG SVSPSSSSSV SASSSSGGVC MELWHACAGP LISIPKRGSL VLYFPQGHLE QAPDFSAAIY GLSPHVFCRI LDVKLHAETA TDEVYAQVSL LPESEDTERR VREGIIDVDG GDEDYEVLKK SNTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSQ PRPSQELLAR DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGDDGK LRLGVRRAAQ IEGASAFSTQ YTQNMNHNNF SEVAHAISTH CAFSIYYNPK ASWSNFIIPA PKFLKIVDYP FCIGMRFKAR VESEDASERR SPGIITGISD LDPIRWPGSK WRSLLVRWDD VEANGHQQRV SPWEIEPSGS ISNSGSFITT GPKRSRIGFS SGKPDIPVSE GIRATDFEES LRFQRVLQGQ EIFPGFINTS SDSGAGARRG RFKGTEFGDS FRFHKVLQGQ ETVPAYSMTD HRPHGLSQRN IWCGPFQNFS TRILPPSPVH VSSSPSSVLI PNPSGPDGRP EDHHGDSGRC RLFGFPLTDE TRAVASAMPF PCVEGQNVSS MKGASGVQSN HHHSQGRDIY AMRDMLLDIA L // ID A0A087G573_ARAAL Unreviewed; 289 AA. AC A0A087G573; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK25025.1}; GN ORFNames=AALP_AA8G057200 {ECO:0000313|EMBL:KFK25025.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK25025.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK25025.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK25025.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK25025.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 160 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 160 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 32627 MW; 51770BD4A697A551 CRC64; MSVNHYSTDH HHNTLLWQQH RHTTDTSEPT TTTWLNEDLK ESLFEKSLTP SDVGKLNRLV IPKQHAEKYF PLNTMIITSN AADTSSSSSS EKGMLLSFED ESGKCWRFRY SYWNSSQSYV LTKGWSRFVK DKQLDPGDVV FFQRHRSDSR RLFIGWRRRG QSSSSSVAAV NTSSYSTSMA PPPPPYRNNY SHSEYSHYGA AVATAAETHS IPSPSTVVGS SRTVRLFGVN LECQMDENDG DVAAATAIES PCTDGYYGQN MYYYYSPDPQ NMNIAFTGDT MKQLGERRG // ID A0A087G823_ARAAL Unreviewed; 306 AA. AC A0A087G823; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK26025.1}; GN ORFNames=AALP_AA8G193800 {ECO:0000313|EMBL:KFK26025.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK26025.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK26025.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK26025.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK26025.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34923 MW; BCBAD2EF77DF9A41 CRC64; MVKNSGFGQI MEDGDNPGFF KILRREDLSS GIMRMIPHDL IRRISDNSSS FKMVLKVPWG RSWPVKICKN PSFHFMEDHG WNQFVSDNDL GENEYLTFTH EANMYFNVNI YESDGKEMLK PRKSAANGSS SCRNRREKMK NIYKDVKEEE TESSSESSYS SLKTAESTGG RLKKKQKLNL GKKKAEEIDK SKKKQKVDTV CNDSEAGTSS LVPEFELTIK KTYLMFLGIP KKFKDAHMPS KTRMFKIHHP EGNKSSDVLY LVTDVQARFS AGWSRFAKEL GLVVGNVCTF KLIKPNEMLV EVSKTP // ID A0A087GBR2_ARAAL Unreviewed; 339 AA. AC A0A087GBR2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK27314.1}; GN ORFNames=AALP_AA8G366400 {ECO:0000313|EMBL:KFK27314.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27314.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27314.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27314.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27314.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38403 MW; 137942F57D07691E CRC64; MDFDEYGFSP FPDFFRYYNS QEHSQRLVIP SSYKQYYPTP LPQTAVLKKP EGRFWNVKWT ITQDDTISFE DGWSKFVKDN GIIEGDFVLF TYDGNRVFWV RVFRGDMVVK PESPVKIQEI SDDEDDDTTG GDDDHGVELD SNGNMIISIS LGSSDEDYVD EDETTGGGGG DHGVEEDSNE NMIISLSLGS SDEDYDDDYV DDDEDTMLCE ANSACNGSVM KGGSSQKNCV ALVAADAEKY LDEPNNPFFI AKSPSARRVL VINMQVRKDY DLKFGSTINI IDRFGEVKRK IGVWKDRLVI NKWDEIYKRN KGKPGDSVVC EILRERGVVH SLKVHFVKK // ID A0A087GBV6_ARAAL Unreviewed; 271 AA. AC A0A087GBV6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK27358.1}; GN ORFNames=AALP_AA8G372500 {ECO:0000313|EMBL:KFK27358.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27358.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27358.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27358.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27358.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30887 MW; FB1F53E6270B904D CRC64; MAYEEARKLR LEENHKRLQD LGISQISKSL TQISTKTPSK QRISRPIDKT TTVSEPRRSS RARTNITSYR DDVGVDTVRT LSRRKSRRNS SWASYIARPL EECKFASYEE KVGALKAAEE FQSSLESPHP SFVKSMVRSH VYSCFWLGLP SRFCVDHLPK GTEEMILEDE KGEEYEAVYI GTRTGLSGGW KRFALDHKLD DGDAVLFVLV EPLRFKIYVF RGSENINPTS ARKRGKAKQR DEDKDVKESC DEGGSSGATK RSSARLRKRR A // ID A0A087GC94_ARAAL Unreviewed; 941 AA. AC A0A087GC94; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA8G390400 {ECO:0000313|EMBL:KFK27496.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27496.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27496.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27496.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27496.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 802 886 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 492 541 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 941 AA; 104113 MW; EDE832B79BCF27DF CRC64; MRLSSAGAGF NPQPHEVTGE KRVLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS TNKEVDAHIP NYPSLHPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNAQE QKDPYLPAEL GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYSQQPPAQE LMARDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RANRPQTVMP SSVLSSDSMH LGLLAAAAHA AATNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGICDLDPTR WANSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPPGLPSFHG LKEDDMGMSM SSPLMWDRGL QSLNFQGMGV NPWMQPRMDA TGLLGMQNDV YQAMAAAALQ DMRGIDPAKA AASLLQFQNP TGYSMQSPSL VQPQMLQQQL SQQQQQQLSQ QQQQQLSQQQ QQQQLSQQQQ QQQQQQQLSQ QQQQQQQLSQ QQQQQAYLGV PETHQPQSQA QSQSNNLLSQ QQQQQQVVEN HNPSASGAAM SQFGSASQSN SSPLHSMNSM CQQQSFSDTN GGNNPISPLH TLLSNFSQDE SSQLLNLTRT NSAMTSSGWP SKRPAVESSF QLSGAGNNTQ SVMEQLGQPH TSNVSPNAVS LPPFPGGREC SIEQEGSASD PHSHLLFGVN IDSSSLLMPN GMSNLRSIGI EGGDSTTLPF TSSNYNNDFS GNLAMTTPSS CIDESGFLQS SENLGSENQQ SNTFVKVYKS GSFGRSLDIT KFSSYHELRS ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK ILSPQEVQQM GKRGLELLNS APSSNNVDKL PSNGNCDDFG NRSDPRNLGN GIASVGGSFN Y // ID A0A087GCE5_ARAAL Unreviewed; 388 AA. AC A0A087GCE5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK27547.1}; GN ORFNames=AALP_AA8G397800 {ECO:0000313|EMBL:KFK27547.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27547.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27547.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27547.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27547.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 388 AA; 44679 MW; 4F82757F93AF49EC CRC64; MSKGDDSLPK FFKVYLPDDS GDDLDIPISF NSCLPKSMPK TVIVRSIYGK IWKLELRKCY GDVERFVMVN GWKSIVKDED LKGGEFLAFE FDGSRFFNFC IYGQRTCKRL ASLVQDKEVK DESDGEDGRS SDDTIVLDEE DDDDDDDDQD YGDEGKCSED IIVLDDDEDE DEDEDEDEDD DDGDGDDGED DDDDDDDDDQ DYGEEDKSNK DIIVLDDDDD DDDDDDDQDY GDKEKSSEDV IVLDDDDNED DDDDYADDEN ERVRVETERK EKGSSGDYID GEDNRQYLDN EMNPFFIVNQ NLQRKVDARI PAKVINDYGL RFPEFIYLID PLEKIFGKLK RKVEGRMIKA FDSITRRNQV KSSDKMICEL LRETNGLVCK IKVHVIRG // ID A0A087GCE6_ARAAL Unreviewed; 278 AA. AC A0A087GCE6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK27548.1}; GN ORFNames=AALP_AA8G397900 {ECO:0000313|EMBL:KFK27548.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27548.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27548.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27548.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27548.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31464 MW; CE3C06F553F81930 CRC64; MTTMKRGESS DDCLPKFFKV YLPGESGDDL ELPASLNSYL PKHLPRTVTV SCISGKNWTL ALRKCSVDKY VLVNGWKRIV KDECLTGGEF IEFEFDGFKC FNFCIYEGDT MCKRLGRNSV DSEEIKEESD DDVIVIDSDD DVDYDIADDI EYVEDDDDDD DEAVDDDDVR QYLDDCNNPF FTMKLNPKKK SQLHIPSQVI RDYGLNFSES ITVVDPLAKK FGTLENAIKI QVNGSVFVKK FGSVIRRNNV KLTDKLVCEL KKTGNSPVHT IKVSIING // ID A0A087GCH4_ARAAL Unreviewed; 792 AA. AC A0A087GCH4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA8G401800 {ECO:0000313|EMBL:KFK27576.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27576.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27576.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27576.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27576.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 669 751 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 173 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 87927 MW; 50FFB0EDEFD4BE36 CRC64; MEFDLNTEIA EVEEEENDDV RVRIEKGRLG ILPSSSSSCS SGSSSSSSST TTASVSSIYS ELWHACAGPL TSLPKKGNVV VYFPQGHLEQ DAMVSYSSTL EIPKFELNPQ IFCRVVNVQL LANKETDEVY TQVSLLPLQE FSMLNADGKE VRELGGDEER NGISTIKRTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA PLDYKQQRPS QELIAKDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RDEDGELRLG IRRAARPRNG LPDSIIEKNS CSNILSLVGN AVSTKSMFHV FYSPRATHAE FVIPYMKYIT SNRNPISIGT RFRMRFEMED SPERRCAGVV TGVCDLDPYR WPNSKWRCLL VRWDESFVSD HQERVSPWEI DPSVSLPPLS IQSSPRPKRP WAGLLDTTPT GNPITERGGF MDFEESVRPS KVLQGQENIG SASPLQGFDV MNRRILDFAM QSHANPVLLS GRVKDRFGEF VDATALDPAC SGVMDLDRFP RVLQGQEICS LRSFPQMAGF SPAPASGKPN LGYTDPFAYQ ANKSSFYPLA SQGIRSTHIP YQNQYNAGDK SSGLPSRAIN FGGETGKFDA QNEGGLPKNV TADLPFKIGM TGKQKGADFN MNASSGCKLF GFSLPVETPT SNPQSSSKRI CTKVHKQGSL VGRAIDLSRL NGYNDLLTEL ERLFNMEGLL RDPEKGWRIL YTDSENDMMV VGDDPWHDFC NVVCKIHLYT KEEVENANDD NKSCLEQAAL MMEASKSSSV TQPDSSPTVT TV // ID A0A087GDA7_ARAAL Unreviewed; 374 AA. AC A0A087GDA7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK27859.1}; GN ORFNames=AALP_AA8G438600 {ECO:0000313|EMBL:KFK27859.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27859.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27859.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27859.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27859.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 374 AA; 41544 MW; BFD52CB34E406553 CRC64; MATTLFSSPA NPNFFKPLLP GFKTHITIPE AFYSKYLEGK EEGNAATLIS DASDITWKVT VDGLRLTHGW EKFALAHDLR VGDILAFRHD GNLMFHVTPF GPGSCEILYS HDNDQNHAGE LAGSSKAKKQ NPIEDETCIV VVPVTASNLR TDSVNLSKGF TTSSGLSKLC NEIILVGETG RSSTIGLVYH NSSNRFCFRG GWRAFCRTNG HKAGGFLRFT LVSNGKTPVL RIFPLERTVD STRDHVSAEV KSLEPAKEKK NVESLSLSDD SSFVVSVTVN NLKEDKLFLP SRVSRPNIKN KGLQKIDLMN KQGRTWTLTL KNRRLSDRFF ITHGWTSFCE ENGQKAGCSF TFKLVRHGTN LVLLMNETLR EEGV // ID A0A087GDA8_ARAAL Unreviewed; 373 AA. AC A0A087GDA8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK27860.1}; GN ORFNames=AALP_AA8G438600 {ECO:0000313|EMBL:KFK27860.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK27860.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK27860.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK27860.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002876; KFK27860.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 367 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 367 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 41445 MW; 8721C8B210D4DA03 CRC64; MATTLFSSPA NPNFFKPLLP GFKTHITIPE AFYSKYLEGK EEGNAATLIS DASDITWKVT VDGLRLTHGW EKFALAHDLR VGDILAFRHD GNLMFHVTPF GPGSCEILYS HDNDQNHAGE LAGSSKAKKQ NPIEDETCIV VVPVTASNLR TDSNLSKGFT TSSGLSKLCN EIILVGETGR SSTIGLVYHN SSNRFCFRGG WRAFCRTNGH KAGGFLRFTL VSNGKTPVLR IFPLERTVDS TRDHVSAEVK SLEPAKEKKN VESLSLSDDS SFVVSVTVNN LKEDKLFLPS RVSRPNIKNK GLQKIDLMNK QGRTWTLTLK NRRLSDRFFI THGWTSFCEE NGQKAGCSFT FKLVRHGTNL VLLMNETLRE EGV // ID A0A087GFT7_ARAAL Unreviewed; 745 AA. AC A0A087GFT7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK28739.1}; GN ORFNames=AALP_AA7G040500 {ECO:0000313|EMBL:KFK28739.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK28739.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK28739.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK28739.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK28739.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 320 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 320 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 745 AA; 82827 MW; 6730B065149F8807 CRC64; MSSSSRFCLN RECSQSHFKV DHYRSGWPLR TGDFADLCHR CASAYEQGKF CDIFHPRASG WRCCESCGKR IHCGCIVSAS AFILLDAGGI ECLACTRKKV PLGPSFAPPQ SYFLQSPVAE KFRNLTNHIS CQPPSLLSPS ALQLDLLNLG DRYGFSQPTS HDRGMTDLMG KLMSEKLKNH TIDILNNQKA GPNRNVPPCP NVNVYHPLIS LKEGPFGTQI ACPAPNTTPI VTTGHSRLDG SNLIFPTAHT PKFSSLSRLP NDLNGGADST FEKKSWNLGT HFDTPGKYQV VPQYWPKGSN NSQDQQNASK ESNFVVTTLF EKMLSASDTR KQGRLVVPKQ YAEAYFPQVS DLKGVPLKVQ DSMGREWTFR YHLNNTRTYV LDGVAACLQS MQVQAGDTVI FKRLDPERKL IMDFRKASVA QSSDQEIDSV NNISDTCTNE DTEPVDTQSP SKFKKSAKRT KESRSKKKNS NTIITRSKRQ KVEKGDLIEL KLTCKEAQGL LLPPPNFTPS IVTIEDTEFE EYEDAPIIGK PTVCTSDGGG STCSEDEELI AEQHDEEAME ETEEHLMSPT ATTKHPRHKL GCACIVCLQS PSGFGPKHVQ GCCCMVCEMM KRRRRSLLLY NEKKQIDKAE NAKKMLESLN FDEELHQCAN KSGNTSKNHT SHLKGQIDLN LQPEKDEESM PGAYTTTKNK SVNHDEIVKS SFKPPSSSSP YSHIDKEDTG KLNSETADTN TSSSYPRLVV LLQGE // ID A0A087GGF1_ARAAL Unreviewed; 641 AA. AC A0A087GGF1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA7G070000 {ECO:0000313|EMBL:KFK28953.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK28953.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK28953.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK28953.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK28953.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 527 619 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 641 AA; 72635 MW; 0ADDBF1ADA37FE91 CRC64; MTNRGGDGDG GEEYLYKELW KLCAGPLVEI PQAEERVFYF PQGHMEQLEA STQHDLNTMK PLFDLPPKIL CSVMNVRLQA EKDTDEVYAQ ITLIPEGTQV DEPMSPDLSR PELQRPKVHS FSKVLTASDT STHGGFSVLR KHATECLPPL DMTQQTPTQE LVAEDVHGYQ WKFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGELRVGVR RANRQQNSMP SSVISSHSMH LGVLATACHA TQTRTMFTVY YKPRTSQFII SLNKYLEAVS NKFSVGMRFK MRFEGDDSPE RRFSGTVVGV KDCSPHWKES IWRRLEVHWD EPASISRPDK VSPWEIEPFL TSENVPPVVI KNKRPRQVSE VSALDVGITG SNLWSSGLTQ SREFAQSCIT SQRISPQQIY HDATEDFKNS DWLMSSYSVS NMSKDSTLND QMVFPVEQKK PETTTSYRLF GIDLMSSSLA TAEEKTAPVR PINTTKPSPD SNSDPKSEIS KESEEKKQEP AQASPKEVQS KQSSSSRTRT KVQMQGVPVG RAVDLTALNG YSELIDDLEK LFEIKGELRS RNQWEIVFTD DEGDMMLVGD DPWPEFCNMV KRIFIWSKEE VKKMTPGNRL RVLFSEVETT LTATKTDNHS N // ID A0A087GIP5_ARAAL Unreviewed; 511 AA. AC A0A087GIP5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29747.1}; GN ORFNames=AALP_AA7G173600 {ECO:0000313|EMBL:KFK29747.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29747.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29747.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29747.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29747.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 152 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 294 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 152 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 294 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 511 AA; 58029 MW; 5715CADF749CFE3D CRC64; MANPPRSSLF QQRFLTGNNP VLKLDDEFLR NYTKVLLRTD TSERFWKVYL DGDRLAGGWE VFAGDNKFRD GDVLVFRHDG DENIHVSVSS RSNSGDIEHA SPCNVESDSE YEYEYDDDDG EDEDDEDDDD GLGNISVRKN KKLEADSSSG RFVTAHVTRY SLHKDRLDLS RNLTVSLGEH NKAHEIDLVN KQGRRWTLVI AKNCSSGVFY IRRGWSNFCS TNGLKQGDLC KFKLVQNGEK PVLWLCSHES GNNHEEEECT EVDAVKNCSS GRGKAKNMSN DVSKGKNMKT PSSFLITEFT PNRFKNGQLY LSTGFTTENG ITKPGETTLQ NKDGRTWSSD IHMTGVEGNR WFYMRRGWRE MCKANGVKVN DSFVLELVWE DANPVFKFHS KIENNGSKGK GNRRTRKKRA CETDVTVEKT PTIGIEGRTR VSYRDTTTNS RKLQRTEPKS CSISDQVTNV KRSIVDTLNT VKQFRSELET REQNLEASLL EIDALGERIL GISQILNHKL V // ID A0A087GIQ4_ARAAL Unreviewed; 392 AA. AC A0A087GIQ4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29756.1}; GN ORFNames=AALP_AA7G175000 {ECO:0000313|EMBL:KFK29756.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29756.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29756.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29756.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29756.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 169 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 169 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 392 AA; 44923 MW; DCC22DB7D418F9E2 CRC64; MANSVFFEAP KNPHFFQPIL PGFHSHLSIP VKFFSVYIEG RNEKNTVELR SDASEKTWTV KMEGRKLTEK WKEFVVAHDF RVGDIVIFRH EGDLVFHVTG LGQSCCEIEY VQDNIENLSI EQNRKTEQES SPEDDVKVKE NKGKFPRKKH GKKRNLEAET ESFSSDLPCF VARVTDSNLR DDILNLPKNF VRPQGPNKGK NKIVLMDEGA RTWTVNLRFR DSSGTFYMRT GWRSFCHENG LKPGDSVTFK QESNNTRTPI LRFSALEIKS VSTKRSSKGK RKTGEMELVT LTATPASLKY SRLYLPLNFI MDNKMETAGG KKITMLDKKG VKWPVSLLFI KGTRRMHFGS GLREFLEAIG VQENESFTLE LDWEDTTVPP IFKFCSKTKT SL // ID A0A087GIQ5_ARAAL Unreviewed; 408 AA. AC A0A087GIQ5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29757.1}; GN ORFNames=AALP_AA7G175100 {ECO:0000313|EMBL:KFK29757.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29757.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29757.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29757.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29757.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 177 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 306 405 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 177 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 306 405 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 47388 MW; 1DCB28D267D72E96 CRC64; MADQVFESPT NPHFFQPLLP GFHSHLSIPV DFYSKHIEGR NKKNMVELTS DASEKTWKVK REGRKLTLGW KDFAVAHDYR VGDIIVFKHQ GDFVFHVTGL GPSCCEIQYV QPSNDDNDDE EEENIRNLPK KQKLKTEQES LPEDEDKDNM AELQRKKLVK TRIHEGEAES FESDQSCLLV RVTDSNLRED TMFLPKKFVW SKGSNKIILM DEGERKWTLN LRFRESSRTF YMSHGWRNFC HENMLKPGDS VTFKQENDNT KTPVIRFSTS ESKKCVSTKD SSKGKKRKTA ESSQSRVPSA LSETRFVTLT VTPSSYKKSR LYLPASFTRI HKMENVRGKK IIMLDKHGVE WPVYVCLDKR YTRLRCYSGV KAFFKAIDIK PDESFVLELV WEDKTSPPIL KFCSKIKT // ID A0A087GIQ6_ARAAL Unreviewed; 514 AA. AC A0A087GIQ6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29758.1}; GN ORFNames=AALP_AA7G175200 {ECO:0000313|EMBL:KFK29758.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29758.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29758.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29758.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29758.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 59 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 112 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 270 362 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 415 511 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 59 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 112 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 270 362 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 415 511 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 514 AA; 58519 MW; 7B47B428394F753C CRC64; MVELTSEASK KTWKVKMEGQ RLTVGWKDFA VAHDFRVGDV IIFRHQGDLV FHVMGFGPSC CEIQYVQSNN NDEDCDDNDD EDEEEEDNIR NSQVKTEPES SPEGEDKDSM GSKAIVIMDE GERTWMLSLR FRESSETFFM IHGWRSFCHE NVLKPGDSVM FKLERNNTKT PLLRFFTSES KLVITKDSSK GKRKESGESS HIVSSPSSSL SENRFVTLTV TQSILKDGRL CLPRSFTRVN GMENAGAKKI TVLDKNGVEW PDHVLQAPKN PHFFQPLLPG FDSYLKVPVK FFLEHIQGRN KRNTVELTSD ACEKTWKVEM DGRRLTVGWK EFAGAHDFRV GDIIIFRHEG DFVFHVTGFG PSCCELQYEH DNIRDLSMEQ NLKTDSSKGK RKETGESSHS QRVLSPSSSL SENRFVTLTV TSFTLKNCRL YLPRSFTKDN KMETARGKKI TLMDKNGVEW LVSLLMDTGN MHFGEGLTNF LNAIGIKASE SFVLELVWED TTTPMLKFCS KVKT // ID A0A087GIR4_ARAAL Unreviewed; 929 AA. AC A0A087GIR4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29766.1}; GN ORFNames=AALP_AA7G176200 {ECO:0000313|EMBL:KFK29766.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29766.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29766.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29766.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29766.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 456 549 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 599 695 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 830 926 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 456 549 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 599 695 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 830 926 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 929 AA; 105495 MW; 3AA9275FED50C9B3 CRC64; MEDQVLQSPT NSHFFQPLLP GLYSHLNIPV AYFSKHVKGR YQHKTAKLRS DASDTTWEVK IDDGRRLTGG WKEFVEAHDL RIGDVVVFRH EGDLVFHVTA LGPSCCEIEY TSSHNIGDDD NKDNIASEMR PMKKRVKKNP RTIEASSSDH SCFVVNVTLS NIRADKLYVL FCNANGMNRG QYMFKLVRNS GTPVIRLCQA EYRHEGDTNS YFVRSLVPSS LRDDTLYLPK EFVRSNGLKD ECSEIVLKNE KGGRWNLVLR RIKSNNYMVI SRGWTSFCEA NGIKVRDPFM FKLVRTEGKP VLCLCPTTES NHDTSLVECS EAESVNSLST NPSSGEESSE TEESEENSIE DITVKEESEE VSIEDKISLR ECLNIKKRKY SLSAGASSSS SQNRFVTLTI TPYSIKSNKL RLPLRFTRVN GMKVGKVTLL GQDGVKWMIL EVFETMEDQV LESPTNPHFF QPLLPGFNSY LNIPVTFFSK HVKGRYQHKT VKLRSDASDT TWEVNIDDGQ RLTGGWKEFV EAHDLRVGDV IVFRHEGDLV FHVTALGPSC CEIEYSSAQN IDDDSDGYKD NIASEIRPMK KRAKKNPRTI EDSSSDHSCF VVNVSVSYLR DDKVYVPISF VRSNGLIKSY KKVLLLDEMG RSWNLSLDHD KSGNHTYLRY GWRSFCNANG MNRGRYMFKL IRNSGTLVIR LCQAEYRHES DRHSYFVRSL TPSSLGDDTL YLPRKFVRSN GLKKECGEIV LKNENESNHE TSVVECSEAE SVSSLSTNSS SGEESSETKE SEENSIEDIT IKEENEEESM EDKSSLRECL NIKKWKYSSS ASSSLSQNRF VTLTITPYFI KSNKLLLPLR FTRVNGIKVG EITLLGQDGV NWMLSVVKET SYGRMRLGRD WKGFCEVHGV KIGESFVLEL IWDNDASPVL KFCNKVNSV // ID A0A087GIR5_ARAAL Unreviewed; 541 AA. AC A0A087GIR5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29767.1}; GN ORFNames=AALP_AA7G176300 {ECO:0000313|EMBL:KFK29767.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29767.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29767.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29767.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29767.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 442 538 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 442 538 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 541 AA; 61450 MW; 509AA7402661A780 CRC64; MKDQVLQSPT NPHFFQPLLP GFNSQLNIPV AFFTKHVKGR YQHKTVKLRS DASDLTWEVN IEDGRRLTGG WEEFVEAHDL RVGDVVVFRH EGDLVFHVTA LGPSYCEIEY TAQNIDDVSD EHKDNIASEK RLMKKRVKKN PRSDGDSSFD HSCFVANVTV SNLREDKVYV PVSFVRSNGL SKTHGKIVLL DEMGRSWNVT LVHYKSGDTF LRNGWRRFCN ANGINQGRYM FKLVRNSGTP VFSLCQAEYR HESDRHSCFV RFLTPSSIRN DTLYLPKEFL SSNGLKDECG EIVLKNEKGG RWNLVLRRIK SNNYMVISRG WTSFCEANGI KVRDPFMFKL VRTEGKPVLC LCPTTESNHD TSLVECSEAE SVNSLSTNPS SGEESSETEE SEENSIEDIT VKEESEEESI EDKSSLRECL KIKKWKYYSS AGASSSSSQN RFVTLTITPY FIKSNKLLLP LRFTRVNGIK VGKVTLLGQD GVKWMVSLVK ENSSGRLRLG KDWKGFCEVH GVKLGESFVL ELIWENDANP VLKFCNKVNS V // ID A0A087GIR6_ARAAL Unreviewed; 387 AA. AC A0A087GIR6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29768.1}; GN ORFNames=AALP_AA7G176400 {ECO:0000313|EMBL:KFK29768.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29768.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29768.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29768.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29768.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 283 381 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 283 381 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 387 AA; 44698 MW; 21E48B54D0D33CAF CRC64; MTNPPLQSPT NPHFLQPLLP GFDTHLKIPV AFFSKYIVGK HEQTTVKLRS DASDKTWEVK MEGRRLTNGW KDFVTSHDLR VGDIVIFKHE GDMVFHVTPF GSSCCEIQYT QQSHIIKEEE DDIVHVEEDR NVLRKKNQKP KTEPESFISF DYCFVAQVTD SNLQHDTFHL PAKASRSNVL NRGFQEMIIV NKEGKSWTLT LKGKEADQTY YISRGWRSFC HENRQRVGDL IPFNLVGDGK TTPMICICPE EKCKELISEY ISKMKTVKRS CWVASSSSRQ NRFVTIILTR YNIKYSKLIL PTSFVKIHGL HKQEKVILMN KDGRKRLVNL VQDGPRFGRR GLGKGWKIFC EDNDVNKIGV PFVLELIWEH NIPVLKFCSI KIEPISV // ID A0A087GJ88_ARAAL Unreviewed; 382 AA. AC A0A087GJ88; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK29940.1}; GN ORFNames=AALP_AA7G198000 {ECO:0000313|EMBL:KFK29940.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK29940.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK29940.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK29940.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK29940.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 382 AA; 43355 MW; 8D1B3EB5FB7C0C9F CRC64; MKWEEELYWT HFQTLHFSQL LLPGFHNRLV IPQKFSTHCK RKLPKIVTLK SPSGVTYNVG LEEHEDKTLA FCSGWDKFVK DHSLVEHDLL VFKFHGLSEF EVLIFDGDTF CEKPTCYFVK KCGHAEKKTI KGIDFTATSS RSLKRDITTD DVETTQPVIT PDGNELEDLI DTDTDTDTDT MLTPNVVVSS QTGYEQEEHI NSDIDTASGQ IPVVSPSSTR RISEGKYPLS VFKKMRGEIS SINLDRKVGG RRKSISETSK RKALSLAKRA ISPNGLLVVM KRSHVLSKFF LTIPMKWSWK NKLLEPQEVV MQVDQTKWQL MFKFYGARGY GGISTGWRKF AQDNNLCMGD VCVFEPAKSG TKPHHLDVYI FRAAEAESSN NG // ID A0A087GJM8_ARAAL Unreviewed; 356 AA. AC A0A087GJM8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK30080.1}; GN ORFNames=AALP_AA7G214000 {ECO:0000313|EMBL:KFK30080.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK30080.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK30080.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK30080.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK30080.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 356 AA; 40904 MW; 8DD9971ABA3AB4EA CRC64; MLIPISYYDE LPSRLPKTVI LQGASGGIWN VKLKYEQDEV YFGQGWSKFV RDNSLTDGEF LTFAYNGDRI FEVSIYRLDA CKEIGAVSEV DDDKEDSVCL TTSDDSESET ILRSKNKGKS KVEVVKDSDE EEDSVYALSD EEDTETDTCS EVKIVNNIQR SKNKGKEIVK SSDEDSDSDY IEAFGSLDLE ENSYSENSYS SDSEYEAATY AKPKAKNLKK KGKSKSNDDE NATSSLVQKR TKVKAKIKNP EKYLDDPKNI HFETGVKNRT YELYILRQLV KDYNLMFPNH IKYIDDIGSF EVRAIQWSDL RVCIKDWNVI CERNNVKKED RILCELFRKK NLVYAVKIHI IRGKDL // ID A0A087GJN1_ARAAL Unreviewed; 334 AA. AC A0A087GJN1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK30083.1}; GN ORFNames=AALP_AA7G214300 {ECO:0000313|EMBL:KFK30083.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK30083.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK30083.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK30083.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK30083.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 37756 MW; C7FB1BDC759DE661 CRC64; MAATDRLPRF FIVYLSHFSS ESLAIPSFFN ELLPRRLPKT ATLQGAGGCF WKVAFMAKRD GGICFGQGWS KFVEDNLLKS GDLLTFVYDG KRVFEVSIFG AGGTKEKRAI AEVVDIEDDS VYSLSSNDTD TSSEPEIPNT IARTRNSGKS RVEAVDDDSD EEDSDSDNSN SDDSSYSPDI EENMTTLTIP NATTSRKRGT SKSVRNVEAS SSTLETSNRK YEPKIKNPEA YLLDPANIHF ETSVKKRIYE LLIRSQIVKD YNLKFEEYVE FIDKHGKLKA KAMTWSDHRV CIKQWIKIIK RNNLKKGDGV LVELLRNQNV VYAIHIHVVR EKDL // ID A0A087GL26_ARAAL Unreviewed; 390 AA. AC A0A087GL26; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK30578.1}; GN ORFNames=AALP_AA7G280000 {ECO:0000313|EMBL:KFK30578.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK30578.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK30578.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK30578.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002875; KFK30578.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 152 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 285 386 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 152 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 285 386 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 390 AA; 45049 MW; 1530334304945148 CRC64; MANPPLESPT NPHFFQPLLP GFDTHLTIPI AFFSKYIVGK HEQTTVKLRS DASDKTWEVK MDGRRLTGGW KDFATSLDLR VGDIVIFKHE GDMVFNVTPF GPSFCEIQYT QSHIIKEEED DTVDVEEDRN VLRKKNRKRK TEPGSCLYLD YCFVAQVTDS NLQHDTLYLP AKAARSSVLN RGFHEMIIVN KEGKSWTLTL KVREPDRTYY IRGGWRSFCH DNRQRVGDLI PFHLVGDGKS TPMICICPEE KCSELISEYI SKMKTEKKEK RRCWVASSSS RQNRFVTIIL TRYNIKNSKL ILPITFVKIN GIHKQEKIIL MNKDGVKKRL VNLVQDGPRQ GRRGLGKGWK IFCEDNHVYK IGVPFVLELI WEHKTPILKF CSIKTQPICV // ID A0A087GL96_ARAAL Unreviewed; 213 AA. AC A0A087GL96; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK30648.1}; GN ORFNames=AALP_AA6G009400 {ECO:0000313|EMBL:KFK30648.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK30648.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK30648.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK30648.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK30648.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 213 AA; 24563 MW; D95B4576979C90D1 CRC64; MVTTRKARAR AITASHHQPP PEPKSPVNKF FQLVLPSAMK RNMMRIPTIF AKLKGSKLSK FVTLETPLGF KRSIKLKRIG EEIWFQEGWS EFAEAHSISE GHFLLFEYKG NSSFHIKIFN VSACEIDYPR DTVHISDSDD DEIIDLTDQV FLGAQCTREN EQSVNGGDLV HKPEKRPRDI DFEKVLDDVD AIKLLKEEEE EEDKRVFRGK QFL // ID A0A087GLX6_ARAAL Unreviewed; 459 AA. AC A0A087GLX6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK30878.1}; GN ORFNames=AALP_AA6G037600 {ECO:0000313|EMBL:KFK30878.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK30878.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK30878.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK30878.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK30878.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 459 AA; 52117 MW; 0FAA494A3E688CF6 CRC64; MATSDEDGEE NPPRFFKVFI SHMSSDSMLI PISYYDELPY HLPKTAILRG TGGCVWNVAI DIKKKQEEVH FGKGWAKFVK DNSLSDGDFL TFVYNGKSVF EVSIYGRDGC KEIRAVTEVE EDEEEVSICS LSSKDMDTCS ESEMANAIPR SKNKGTSSEE NMEVSDDDDD DIEDSVYSLN SEEDTDTEES DSEFNMASTI PRSKNKGKPK AKVVDDSDDF VDNVYAEDTD TDTDSEFKIA NAIPRIKNKG KEKEEEVSES SDEKDSDSDY IEAFSNLDFE DNSDSDDSSY SLADSEETLS CPLKTTKVKP KVTKPEKKGK SKVKEDVDAM SESSCPVAIG KKMKKAIPKI KNPESYLDDP KNVFFESSIK NRLYELLVHA QLVKDYGLKF KDKVCYIDPK GELEAKTAKW KDERVCIKKW KRICERNKLK KKDRILCELL RRGKLVYAIK LHIFREKDL // ID A0A087GPM2_ARAAL Unreviewed; 231 AA. AC A0A087GPM2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK31824.1}; GN ORFNames=AALP_AA6G163200 {ECO:0000313|EMBL:KFK31824.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK31824.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK31824.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK31824.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK31824.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 231 AA; 26493 MW; CBEDEEB1C0E15BA1 CRC64; MVVAKQSPYE EFRLQRVEEN KKRMEALNLP RLSRNLNSKI SIKTSPMKKS PLRTREKQLV IVRRSSRISN SSSSTPVYKE IDVERVRIPR RVCSSRRRDF SNRVYVSEEC REEAISRAEK LQDDLGTDFP IFVKSMLPSH VSGGFWLGLP SYFCKSELRN QDGVMTLIDE EGEEFETVYL ARKTGLSGGW MGFAIAHNLA YGDALVFQLV RPNAFKIYIT RVGSSEESSK I // ID A0A087GR04_ARAAL Unreviewed; 655 AA. AC A0A087GR04; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA6G225100 {ECO:0000313|EMBL:KFK32306.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32306.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32306.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32306.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32306.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 630 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 105 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 655 AA; 72779 MW; 74E309559E42223C CRC64; MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV AVKFLADAET DEVFSKITLL PHNELDLGND AVLCDANGNE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYTAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGS GDDETTTSKL MLMKRENAAA GRVKVEAVAE AVARAACGQA FEVVYYPRAS TPEFCVKAAD VRSAMKIRWC SGMRFKMAFE TEDSSRISWF MGTVSAVHVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAMHLSPFSP RKKLRIPQPF DDGTKFPIFS PGFTHNGDSM CYLSKDNISS SNNNNAPAGI QGARQAQQLF GSPSPSLLSD LNLTSYSSNK LQSPAMFLSR HHYDNILSRQ ARDTETNNNI SCSLTIGNPA LVQDHKKSGS VKTHQFLLFG QPILTEQQVM NRKRSLEAEA QDDNSSAARG LTWNYGLQGL ETGHCKVFME SEDVGRTLDL SVIGSYQELY RKLAEMFCIQ ERSDLLTHVV YRDANGVIKR IGDEPFSDFM RATKRLTIKM DIGGDNVRKT WITGIRNGEN GIDASAKTGP LSIFA // ID A0A087GRW7_ARAAL Unreviewed; 583 AA. AC A0A087GRW7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32619.1}; DE Flags: Fragment; GN ORFNames=AALP_AA6G267200 {ECO:0000313|EMBL:KFK32619.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32619.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32619.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32619.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32619.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 386 482 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 386 482 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 583 583 {ECO:0000313|EMBL:KFK32619.1}. SQ SEQUENCE 583 AA; 66577 MW; F3B5ED50AE994DB6 CRC64; MAKPPQFFHT LVNTHLVIPK DFFSKYIQGK SVDDTVELKS DSTDINWKVK MIGRRLNDGW EEFAVANRLQ IGDVLLVRYE DDLVLHVSNL GPNCSETRDN NNDDQNNIGK LLLKKRMYPK AELDDDDDGD MELPIKKKVK KSLYTEVSCD VENIKVESIE DECSSMEIES SEDEYRLMES LLEIEKTKHT IDREQEDKER ESPFIDSSNR DKIKRDESNK EESRSRERNK NYMTLTITPY CIRKSRMRLP PCFTKENAIN KPGMITLLGK DGLKQQANLL LDNARGTMSL GSGWNSFVEK NDLKIGDSFT FKLIWEDTTP VLRLCDAESP FKTNKKTSPF KTNKKESPFI DSSNRDKINR DEITKEERNK NYLRAKDTTL PSENQLVTLT ITPYRFRKGR LPLPAWFTKD NGINKPGMIT LLGKDGIKHP TKLLLDKVNA VMALGGGWKP FVEENGLKTG DSFTLKLIWE DKTPVLSLCP AERSIDKVGG GCSETNQKNS LPVEPSSCKK ISNDENSKDE YKPIERENTH LRGRDSTPSC QKQFVTLKVT PSCFTNCRLI LPTEFAKENS MNKPGVIYLV GKD // ID A0A087GRW8_ARAAL Unreviewed; 791 AA. AC A0A087GRW8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32620.1}; GN ORFNames=AALP_AA6G267300 {ECO:0000313|EMBL:KFK32620.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32620.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32620.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32620.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32620.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 148 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 317 410 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 472 568 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 690 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 691 728 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 317 410 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 472 568 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 596 690 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 691 728 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 89250 MW; 1A44EAEFF893CB76 CRC64; MVKSTLLRHP QFFHTLVSGF HTHLVIPVDF FSKYIQEKSV EDTVELKSDS SDMTWKVKMT GQRLSDGWED FAVSNNLQIG DVLLVRYEGD LVFHVSDLGP NCSETRDIAP PSSNNDDDDN MEFHRKKKLR KNCSEGEAGS SSSSDNSCFV ATVTASSLRT DTLYLPQHFT SANGLTTKCC KIVLIDGGER SWALDLSFNN SSDTFYISRG WRNFCYENGQ EEGGVFMFKI VGSGETLVLS SCPTESSNDR KQRDCSEASG RESISTKVNC EEENIEMENS EDECSSMESL LVVEKMEYSR KRTVSSYSSY SPCHKRLVTF TLPPDYIRIR RLNLPVPFLR ENNINKPGKI YLLGKNGTKC LTSLLLNMRG AMSLGKGWKG FVKANGIKTS FTLKLIWEDT TPMFSLCDAE STIDREQEDL SKTSETESSF IDSSNRDKIN KYEINKEESR SWERNKNDLR RRDSTPSSQK QFVTFTITPS SFTKCRLILP AGFARENSMD KPGMICLVGK DGTKWQTTLL RDKKGTMGLG KGWIDFGEAH DLKAGESFTM ELTWEDETPL LSWCCRESSS SKANEKESVS TEPRGIDSSS AIQNQFVTLA LAPEDVKACQ LHLPSQFMKA NGISKLGKIT LLGENGMEWS GYLLTKDGTV ALGKGWDEFC EANGVKSGEP FTLEFLNKPW EVKVEEDGQK LTDGWKEFAL AHDLRVGDIA VFRQERDMVF HVTLLGPSCC EIQYESCLNN EKNLERYFLF FLREDSEKEV KKNPKRETKS SCFVANVSPA TLSYYSLVLQ Y // ID A0A087GRW9_ARAAL Unreviewed; 980 AA. AC A0A087GRW9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32621.1}; GN ORFNames=AALP_AA6G267400 {ECO:0000313|EMBL:KFK32621.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32621.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32621.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32621.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32621.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 362 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 675 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 748 843 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 880 974 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 362 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 580 675 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 748 843 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 880 974 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 980 AA; 110268 MW; 29FB384BFBB22CB8 CRC64; MMFSDLKTPS DNNIGNISMI RQEASFSSND QNKIEPPRKK KVKKNNPETE AYSSFHVSAS NMQTDAMYLP QDFTNSDARK RNFQKKCSPR QILSAYSSKY VTFKLAPVDV RHCRLRLPVQ FARENGINKP GKVYLVGKDG SKWLANLLLE GRGRMTLGDG WKSFVKANGL KTGESFTLEA NWEDTTPVLR LCAAEYSIDS REGGGCSDAS EKEPLPLEPS NRTEIVKDEN SLDKNIDENS KRESRSWERE KSHLRGRDST SPSQSRFLTL TITPDSLRHG RLRLPLQFMM ENRMNKPGEI TLLGKDGAKW LVSLLLERRE RMSLGKGWKD FAKANGLKAG DSITLESIWE DETRMLSLLR IECSSDRRQQ SECSKSREKK SIFTEPSSGN RKSNAESNRE ENRKYPHRRR ESLAIQNRFG TSTLSPEIVS YVTHDIRIGE IVVVRDEGDM MFQVSDSGPN CCQIRDALAP SNNNDQDNIG SFSIKMHPHL RKEVGCPSYD QDIIELLRKK KVKTHNPGTE ADPSSDHSCF VAHATASNLH TDELYLSQNV ASSDGVNRKC RKKYSPTQIT SLYSSSEKQL ATFTLAPVDV RNCRLRLPMQ FTRENGINKP GKIYLLGKDG SKWLANLLLE SRGRMTLGDG WKSFVKANGL KTGESFALKL NWEDTIPVLS LCPAEHSIDS KDGGGCSEAS EEECLSIEPS SGKEISNDDN DEDENRKEEN SKEESRSWER EKNHLIWRDS TSSSQNRFLT LTITPDSLRH GRLRLPLQFM MENNMNKPGE ISLLGKDGAK CLVSLLLEKR GRMSLGKGWK DFAKANGLKT GDSITLESTW EDTTPVLSLL RIECSNDKEQ IEFSKQSLST GHSSGNKTGK AENNIEGNRI VILTLRPEDV KDCKLHLPSQ FMRTNGIIKL GKITLLGRSG MKWFAYLVSI DGTVALGNGW KGFCEANGVL VGESFILEFI SREDTNHVFK FCSNFGDQIH // ID A0A087GRX0_ARAAL Unreviewed; 147 AA. AC A0A087GRX0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32622.1}; GN ORFNames=AALP_AA6G267500 {ECO:0000313|EMBL:KFK32622.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32622.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32622.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32622.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32622.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 71 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 71 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 147 AA; 16678 MW; 42F728210DA5DC5B CRC64; MSESFSAEIV ITDGGERSWA LYLRFNKISD TFYISRGWRS FYDENCKRAG SLFVFRLVGN GEVPLLSFSP AESRGDKSCS KESLPVESIE KNYLTSRDST PPSQNRFVTL TFTHDTELNC RQVLDPRWKM LQNEAVPVSG QSNTSTE // ID A0A087GRX2_ARAAL Unreviewed; 441 AA. AC A0A087GRX2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32624.1}; GN ORFNames=AALP_AA6G267800 {ECO:0000313|EMBL:KFK32624.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32624.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32624.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32624.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32624.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 344 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 344 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 441 AA; 49341 MW; 6341D87320291B8A CRC64; MKKKNLHPRT EESISSNEDN TELARKKKSK KNNSETQVDS SSFVALVKAS NLQNDTLNLP KGVISPKGLK RICRKIVLTE EGKRSWTLDL RFNNLSNTFY ISRGWRNFCD ENGKKAKDFF IFKLVGNGAT PLLSFSRAMS GGGKSSKKAS LLIEPSGGKN ISKEKRKKNH LRYRDSTSSN INRFITRTVT HDCLRNGRLH LPLSFMRENG LDKPGMITLV GKDGTKWLTN LNREATGRMS LGKGWKEFAK ANGFKIGDSF KLELILENGT ATLSLVNKDS TSDPRQRGKC SKDSEKESIS TYPSNGKKTI KDKDNREKKS SRTLVQKKCH SNIKDSLSPM QNRSVTMTLV PEDVRACTLH LPSQFMRAHG IDKLGKITLL GKDGMDYSAY RLSRDGFVAL GIGWKGFCET NGVQTGESFT LEFIHEQDAT PVLKFHSNCG D // ID A0A087GRX3_ARAAL Unreviewed; 79 AA. AC A0A087GRX3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32625.1}; DE Flags: Fragment; GN ORFNames=AALP_AA6G268000 {ECO:0000313|EMBL:KFK32625.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32625.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32625.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32625.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32625.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KFK32625.1}. SQ SEQUENCE 79 AA; 8620 MW; B47F80781B308ED6 CRC64; HLPSQFMAAN GINKLGKITL LGENGMEWSA YLLSKDGMVA LGNGWDEFCE ANGVTLGESF TLEWINLQDE TTPVLKICS // ID A0A087GRX4_ARAAL Unreviewed; 1467 AA. AC A0A087GRX4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32626.1}; GN ORFNames=AALP_AA6G268100 {ECO:0000313|EMBL:KFK32626.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32626.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32626.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32626.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32626.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 11. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 10. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 338 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 493 589 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 754 849 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 878 972 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 986 1065 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1108 1204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1371 1467 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 338 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 493 589 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 754 849 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 878 972 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 986 1065 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1108 1204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1371 1467 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1467 AA; 165085 MW; 3EAEE25549F7C03B CRC64; MAKSTLLRHP QFFHTLVPGF HTHLVIPVGF FSKYIQGKSM EVEDTVELKS GSSDITWKVK MTGQRFSDGW EDFAVANRLQ IGDVLLVRYE GDLVFHVSDL GPNCSETRDI APPSSNNDDD DDNIEFHRKK KLRKNCPEGE GEAGSSSSSD NSCFVATVTT SSLRTDTLHL PQHFTSSNGL TRKCCKIVLL DGGVRSWAVD LSFNNSSDTF YISQGWRNFC DENGQEAGGF FMFKLVGSGE TLVLSFCPTE SSNDRKQRDC SEASGRESIS TKVGCEEENI EVENSEDECS SMESLMEIES SEDECSLVES LLEIEKTKYT PKQRFFSYSS YAPCQKRFVT FTLPPDYVRI EKLSLPKQFA SENSVNKPGI IYLVGKDGTK WLTNLHRDTK GTMSLGKGWK DFVKANGIKK GFTLKLIWED TTPVLRLCDA ESTIDKAQEE LSKTNETESL VIDSSNRDKI KRDENNKEES RSWDRNNNYT RGKDSTPSSE NQLVTLTITP SSFIKCRLGL PKCFTKENCI NKPGMITLLG KDGIKQPTKL LFNKVKGVMV LGGGWKSFVK ENGLKTGDSF TLKLIWEDTT PVLSLCPAEQ SIDKRGVCSE TNQKKSFPIE PTSCKKISKD ENIKDDNSKE KNNKEENSKG ENPLMEREKT HLRGRDSTPS SQKQFLTLTI TPSSFTQCRL TLPAPFVREN NMNKPGMIYL GESSSSKANE KESVSTEPRS RDSSSAIQNQ FVTLTITPSS FTQCRLVSLS DNSCLRVLSX XXXFTQCRLT LAAPFVREND MNKPGMIYLV GKDGTKWPTN LQRDNKGTMS LGKGWKDFVK AHDLKLGDSF TMELIWQDTI PMLSWFRTES SSSKANEKES VSNEPRSRDS SSAIQNQFVT LALTPEDVKA CQLHLPSQFM KANGINKLGK MTLLGENEME WSGYLLTKDG TVALGKGWDE FCEANGVKSG EPFTLEFLNS SRDLELLKMA NKHFFKPLLP GFHSHLTIPD AFFLKYIQGR NEQTMAKLRS DASKIIWEVK VEEDGQKLTD GWKEFALAHD LGVGDIAVFR QERYMAFHVT LLGPSCCEIQ YESCLDNENN LEKIEKKKKV KKNPRTRREA SSSLDPSCFV ANVSRATLRY DTLYFPTTFT RANSLDARCG EIVLLNEKGK SWTLALTQKK NGSFFIRRGW RSFCRANGLK AGGFYTFKLI QRGGTPVLRL SATESEEESS EEGDEIESLS TESESDEERN PEKIQRKKKV KKNPRREAES SSLDTSCFVA NVSPATLRYD TLNLPRPFVR ANGLDTRIGE IVLMNEKAGG FYTFKLILRG GTPVLRLLSE ETDEEECSVA DRIESLSTES ESDEESNQDE KSLKKRRSTW KASSSSSQNR LVTLTHTPNN LKKSILFLPV AFTRMHGINE ETQMTLLDKK GVNWSTNLRG EKIGDRIRLV GGWKEFFKAN SVKPGESVEF ELIWKEDTSC VLKFCPE // ID A0A087GRX5_ARAAL Unreviewed; 1444 AA. AC A0A087GRX5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32627.1}; GN ORFNames=AALP_AA6G268100 {ECO:0000313|EMBL:KFK32627.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32627.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32627.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32627.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32627.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 11. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 10. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 338 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 493 589 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 731 826 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 855 949 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 963 1042 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1085 1181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1348 1444 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 338 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 493 589 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 731 826 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 855 949 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 963 1042 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1085 1181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1348 1444 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1444 AA; 162516 MW; 06DCB6FC84D995A6 CRC64; MAKSTLLRHP QFFHTLVPGF HTHLVIPVGF FSKYIQGKSM EVEDTVELKS GSSDITWKVK MTGQRFSDGW EDFAVANRLQ IGDVLLVRYE GDLVFHVSDL GPNCSETRDI APPSSNNDDD DDNIEFHRKK KLRKNCPEGE GEAGSSSSSD NSCFVATVTT SSLRTDTLHL PQHFTSSNGL TRKCCKIVLL DGGVRSWAVD LSFNNSSDTF YISQGWRNFC DENGQEAGGF FMFKLVGSGE TLVLSFCPTE SSNDRKQRDC SEASGRESIS TKVGCEEENI EVENSEDECS SMESLMEIES SEDECSLVES LLEIEKTKYT PKQRFFSYSS YAPCQKRFVT FTLPPDYVRI EKLSLPKQFA SENSVNKPGI IYLVGKDGTK WLTNLHRDTK GTMSLGKGWK DFVKANGIKK GFTLKLIWED TTPVLRLCDA ESTIDKAQEE LSKTNETESL VIDSSNRDKI KRDENNKEES RSWDRNNNYT RGKDSTPSSE NQLVTLTITP SSFIKCRLGL PKCFTKENCI NKPGMITLLG KDGIKQPTKL LFNKVKGVMV LGGGWKSFVK ENGLKTGDSF TLKLIWEDTT PVLSLCPAEQ SIDKRGVCSE TNQKKSFPIE PTSCKKISKD ENIKDDNSKE KNNKEENSKG ENPLMEREKT HLRGRDSTPS SQKQFLTLTI TPSSFTQCRL TLPAPFVREN NMNKPGMIYL GESSSSKANE KESVSTEPRS RDSSSAIQNQ FVTLTITPSS FTQCRLTLAA PFVRENDMNK PGMIYLVGKD GTKWPTNLQR DNKGTMSLGK GWKDFVKAHD LKLGDSFTME LIWQDTIPML SWFRTESSSS KANEKESVSN EPRSRDSSSA IQNQFVTLAL TPEDVKACQL HLPSQFMKAN GINKLGKMTL LGENEMEWSG YLLTKDGTVA LGKGWDEFCE ANGVKSGEPF TLEFLNSSRD LELLKMANKH FFKPLLPGFH SHLTIPDAFF LKYIQGRNEQ TMAKLRSDAS KIIWEVKVEE DGQKLTDGWK EFALAHDLGV GDIAVFRQER YMAFHVTLLG PSCCEIQYES CLDNENNLEK IEKKKKVKKN PRTRREASSS LDPSCFVANV SRATLRYDTL YFPTTFTRAN SLDARCGEIV LLNEKGKSWT LALTQKKNGS FFIRRGWRSF CRANGLKAGG FYTFKLIQRG GTPVLRLSAT ESEEESSEEG DEIESLSTES ESDEERNPEK IQRKKKVKKN PRREAESSSL DTSCFVANVS PATLRYDTLN LPRPFVRANG LDTRIGEIVL MNEKAGGFYT FKLILRGGTP VLRLLSEETD EEECSVADRI ESLSTESESD EESNQDEKSL KKRRSTWKAS SSSSQNRLVT LTHTPNNLKK SILFLPVAFT RMHGINEETQ MTLLDKKGVN WSTNLRGEKI GDRIRLVGGW KEFFKANSVK PGESVEFELI WKEDTSCVLK FCPE // ID A0A087GRX6_ARAAL Unreviewed; 1403 AA. AC A0A087GRX6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32628.1}; GN ORFNames=AALP_AA6G268100 {ECO:0000313|EMBL:KFK32628.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32628.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32628.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32628.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32628.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 11. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 9. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 338 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 493 589 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 731 826 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 855 949 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 963 1042 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1085 1181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1307 1403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 338 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 493 589 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 731 826 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 855 949 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 963 1042 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1085 1181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1307 1403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1403 AA; 158030 MW; 7CEE885FC6F0E5E2 CRC64; MAKSTLLRHP QFFHTLVPGF HTHLVIPVGF FSKYIQGKSM EVEDTVELKS GSSDITWKVK MTGQRFSDGW EDFAVANRLQ IGDVLLVRYE GDLVFHVSDL GPNCSETRDI APPSSNNDDD DDNIEFHRKK KLRKNCPEGE GEAGSSSSSD NSCFVATVTT SSLRTDTLHL PQHFTSSNGL TRKCCKIVLL DGGVRSWAVD LSFNNSSDTF YISQGWRNFC DENGQEAGGF FMFKLVGSGE TLVLSFCPTE SSNDRKQRDC SEASGRESIS TKVGCEEENI EVENSEDECS SMESLMEIES SEDECSLVES LLEIEKTKYT PKQRFFSYSS YAPCQKRFVT FTLPPDYVRI EKLSLPKQFA SENSVNKPGI IYLVGKDGTK WLTNLHRDTK GTMSLGKGWK DFVKANGIKK GFTLKLIWED TTPVLRLCDA ESTIDKAQEE LSKTNETESL VIDSSNRDKI KRDENNKEES RSWDRNNNYT RGKDSTPSSE NQLVTLTITP SSFIKCRLGL PKCFTKENCI NKPGMITLLG KDGIKQPTKL LFNKVKGVMV LGGGWKSFVK ENGLKTGDSF TLKLIWEDTT PVLSLCPAEQ SIDKRGVCSE TNQKKSFPIE PTSCKKISKD ENIKDDNSKE KNNKEENSKG ENPLMEREKT HLRGRDSTPS SQKQFLTLTI TPSSFTQCRL TLPAPFVREN NMNKPGMIYL GESSSSKANE KESVSTEPRS RDSSSAIQNQ FVTLTITPSS FTQCRLTLAA PFVRENDMNK PGMIYLVGKD GTKWPTNLQR DNKGTMSLGK GWKDFVKAHD LKLGDSFTME LIWQDTIPML SWFRTESSSS KANEKESVSN EPRSRDSSSA IQNQFVTLAL TPEDVKACQL HLPSQFMKAN GINKLGKMTL LGENEMEWSG YLLTKDGTVA LGKGWDEFCE ANGVKSGEPF TLEFLNSSRD LELLKMANKH FFKPLLPGFH SHLTIPDAFF LKYIQGRNEQ TMAKLRSDAS KIIWEVKVEE DGQKLTDGWK EFALAHDLGV GDIAVFRQER YMAFHVTLLG PSCCEIQYES CLDNENNLEK IEKKKKVKKN PRTRREASSS LDPSCFVANV SRATLRYDTL YFPTTFTRAN SLDARCGEIV LLNEKGKSWT LALTQKKNGS FFIRRGWRSF CRANGLKAGG FYTFKLIQRG GTPVLRLSAT ESEEESSEEG DEIESLSTES ESDEERNPEK IQRKKKVKKN PRREAESSSL DTSCFVANVS PATLRYDTLN LPRPFVRANG LDTRIGEIVL MNEKESESDE ESNQDEKSLK KRRSTWKASS SSSQNRLVTL THTPNNLKKS ILFLPVAFTR MHGINEETQM TLLDKKGVNW STNLRGEKIG DRIRLVGGWK EFFKANSVKP GESVEFELIW KEDTSCVLKF CPE // ID A0A087GS06_ARAAL Unreviewed; 611 AA. AC A0A087GS06; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK32658.1}; GN ORFNames=AALP_AA6G271700 {ECO:0000313|EMBL:KFK32658.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK32658.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK32658.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK32658.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002874; KFK32658.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR005174; DUF295. DR Pfam; PF02362; B3; 3. DR Pfam; PF03478; DUF295; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 279 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 606 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 279 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 511 606 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 611 AA; 69577 MW; 37355124ACA412CE CRC64; MPSQPLTRRS INHLVRSGDD DELFLVERFD PYPQPELIRF QRFACRVSML DEEAGKWVEV SDLGDRVFFI GHYDNVACSA KELPSGCGLS GNSIVFTSMG PIANAYKYGV ETGHEEDEPN WWRVSNENSV NCLWTSPVVA EGVNRGMQLS TSPVMAKQHF FKPLLPGFHS HLTIPEAFFL KYMKGRTEQS MAKLRSDASK ITWEVKVEED GQKLTDGWKE FALSHDLRVG DIVVFRQERD MAFHVTPFGP SCCEIQYESC LDNENNLGKK NPRREKESCF VANVTPSTLQ SDRLNLPRSF VRANGLDKKR GEIVLMNEKG QSWTSDLKGK RSCRVTYIKH GWRSFCHANG LKPGGFYTFK LIIREGSTVL RLLSEESEEE EYSEGDEIES LSTESESDEE RNPEMIQMKK KVKKNPRREA ESTSLEPSCF VANVSPATLR YDSLNLPRPF VRTNGLDTSI GEIVLMNEKE SEEEEESSES ESNEEGYQEE KGLKKRRSIW KASSSPSENR FVTLTLTPYN VKKSILFLPI PFSRINGISV ETKMALLDKH GVNWPTNLRS ERTRIKLVGG WKDFVKANCV KTSESVKLEL IWKEDTSCVL KFCSIVKPMT K // ID A0A087GUP8_ARAAL Unreviewed; 322 AA. AC A0A087GUP8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK33600.1}; GN ORFNames=AALP_AA5G035000 {ECO:0000313|EMBL:KFK33600.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK33600.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK33600.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK33600.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002873; KFK33600.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 322 AA; 36392 MW; 6F81380DAE988092 CRC64; MMHREAVSAA DASTHDVETK TKAYPLVASV GSWFGSGSGH DHGLSACVPL LGVNWKKRRM PRQRRSSSSF SLLSFPPPLP PSSHVPTHLP ARKIDTRRLR FLFQKELKNS DVSSLRRMIL PKKAAEAHLP ALESKEGIPM TMEDMDGLHV WIFKYRYWPN NNSRMYVLEN TGDFVNAHGL HLGDFIMVYK DLNSNNFVIQ ARKASEEEEE DINNAEEDDV YTDLTRIENT VVNDFILQDY NHYYNNNNAK CSYYYPAIND VTSAATTSTT ASFVYDTTAL TSNDTPLDFL GGLTTTTNNY YSKFGSFEGF GSVENISLDD FY // ID A0A087GVV2_ARAAL Unreviewed; 274 AA. AC A0A087GVV2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK34004.1}; GN ORFNames=AALP_AA5G089200 {ECO:0000313|EMBL:KFK34004.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK34004.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK34004.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK34004.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002873; KFK34004.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31551 MW; B3D6CB3EBF96BFB6 CRC64; MNTQDSVQSF FRVYMPNKTN DDMNLPFVSD NISGTPLPRK VTVKNVSSGS VWKMVMTTNG ESNTVLLQDG WKKIVKDMNL KEPTLLVFEF DGSRVFHFCV YEDSSMCKKM RSPLAKEVIE VDSEESDDDD DVIEEDTESK TEFNESPKRK ERGGTSSRRR QYLKSDSHKF VEYLDDKLNP SFPVDVIKER TRIPAVLIRD YNLTFPKMVI VRDKFNKLER KITIWKNGSV FLNGVGSITR RNHAKPGDKM VCELKMVDGY HGLVHEIKVH VIKA // ID A0A087GWA4_ARAAL Unreviewed; 527 AA. AC A0A087GWA4; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK34156.1}; GN ORFNames=AALP_AA5G107800 {ECO:0000313|EMBL:KFK34156.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK34156.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK34156.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK34156.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002873; KFK34156.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 278 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 425 522 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 278 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 425 522 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 527 AA; 60192 MW; 60F185F7A720DD32 CRC64; MANKNFFKPL LPDFHNHLTI PDAFFLKYIQ GRNEQTMAKL RSDASKVIWE VKVEEDGQKL THGWKEFALA HDLRVGDIAV FRKERDMAFH VTLLGPIHCE IQYESCLDDQ KNLGIIQRRK KVRKNTRREA ESSSLDPSCF VANVSPAALR YDTLYFPTTF TRANSLDARC GEIVLMNERG KSWTLALTQK KNGSFFIRLG WRSFCRANGL KAGDSFTFKL IQREGTPVLR LSRTESEEES SEGDETESES DEVSNLEKIQ GKKNRQKRAE SSSLDPSCFI ANVSPATLRY DKLNLPRPFV RANGLDTRIG EVVLMNEKGK SWTLDLKGNI SCETVYIRRG WRSFCHANGL KAGGFYTFKL ILRGGTPVLR LLSEESNEEE CSEGDKNVSL STESESDEES NQEEKGFKKR RSIWKASSSR SQNRFVTLTH TPNNLKKSIL FLPVLFTRMH GINEETKMTL LDKNGVNWST NLRGEKVGDR IRLVGGWKEF FKANSVKTGE WVDFELIWKE DTSCVLKFCS IVKPMTK // ID A0A087GXH9_ARAAL Unreviewed; 270 AA. AC A0A087GXH9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK34581.1}; GN ORFNames=AALP_AA5G164400 {ECO:0000313|EMBL:KFK34581.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK34581.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK34581.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK34581.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002873; KFK34581.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 30995 MW; FEABA9F324C51C57 CRC64; MAPNRVRFPR FFKVFLAETA SESLAIPLSF TEQLRNPLPH TAKLRGTGGR VWTLSMNKVR EGAYFTTGWS KFAEEHNLKS GEFLTFVYDC NRTFEVSVYG RSCCKEIRAV AQVVELSDSD SEEEEEEEDT IMEETDDEVG FSDDQEINQS VYPLEEEETE TEIDTIGNSN LDGVANPCFD TNLKARIYEL LIPAQTVKDH DLRFGETIKY IDGEGTLEGE RGKWTDDRIC FKGWDRICRR NRLKEKDTVT CELLHTRNKV HSVKVHVTRG // ID A0A087GYX1_ARAAL Unreviewed; 333 AA. AC A0A087GYX1; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK35073.1}; GN ORFNames=AALP_AA5G231800 {ECO:0000313|EMBL:KFK35073.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK35073.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK35073.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK35073.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002873; KFK35073.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 177 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 177 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 37659 MW; DA78F17649D76A1E CRC64; MSSVDESSAS TVSIHTTPAK ILMSSPASLY RMGSGTSVVL DPENGIEAES RKLPSSRFKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AARAYDVAAH RFRGRDAVKN FTDSNGDYDD DEDSFLNAHA KSEIVDMLRK HTYKEELEQR KRKRNGNLKE TAFITVLTGF KSAEYLFEKT VTPSDVGKLN RLVIPKHQAE KHFPLPLANN NVSVKGTLLN FEDVNGKMWR FRYSYWNSSQ SYVLTKGWSR FVKEKRLCAG DLISFKRSNG QDQQLYIGSK SRSGLDQVTG RVVRLFGVDI SSVKSQNGVA VKEDTSEMLL LRCNKKQRVF DAL // ID A0A087GZR9_ARAAL Unreviewed; 583 AA. AC A0A087GZR9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA5G276400 {ECO:0000313|EMBL:KFK35371.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK35371.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK35371.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK35371.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002873; KFK35371.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 478 570 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 583 AA; 65631 MW; F2763B7565672ACC CRC64; MANDDFTSSY DDQLYIELWK ACAGPLVEVP RAEERVFYFP QGHMEQLVAS TNQGIESDQI PDFNLPPKIL CRVLSVMLKA EHETDEVYAQ ITLQPEEDQS EPTSLDPPVD EPIKQVFHSF VKILTASDTS THGGFSVLRK HATECLPGLD MTQATPTQEL VTRDLHGFEW RFKHIFRGQP RRHLLTTGWS TFVSSKRLVA GDAFVFLRGE NGDLRVGVRR LARHQSTMPT SVISSQSMHL GVLATASHAV STKTLFVVFY KPRISQFIVG VNKYMEAMKH GFSLGIRFRM RFEGEESPER IFTGTIVGSG DLSSQWPASK WRSLQVQWDD TATVQRPDKV SPWEIEPVSP TSPVSTPAQQ PQPKCKRSRP IELSVLTPAP PSFMYNFPQC QEPTNASSLK LFQDPSIERN NSFKAETPLP PPTPASSCYR LFGIDLPSNP PAQIPQENQP IDTSSSAKCQ EPITPSSVNE QKKQQTSRTR TKVQMQGIAV GRAVDLTLLK SYEELINELE KMFEIQGQLL PRDKWIVVFT DDEGDMMLAG DDPWNEFCKM AKKIFIYSSD EVKKMTTKLK SSSSLESEDG NDY // ID A0A087H0R2_ARAAL Unreviewed; 303 AA. AC A0A087H0R2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 12-APR-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK35714.1}; GN ORFNames=AALP_AA4G027700 {ECO:0000313|EMBL:KFK35714.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK35714.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK35714.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK35714.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK35714.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 137 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT COILED 207 242 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 303 AA; 35043 MW; DF9E3D2E0E20D40F CRC64; MAQNINLELT LGTNVSNLEL SLRRNVSRVV KKKLTWTDIG KNVRLYIPKN AFEQLIIPEL PWELVENLVN GVEVMIKDER DIAYHVTLIK FIRSGDYYFK NNWIKIVKDK GYKINDEITF WWDSSTGNFY LMRCNHISTN APDPIKTSQL SGPGESSTKM GGPLGKSFTS SWSEHIAEAA RKGGNGEVEL DWDSYERAKQ EILSDKARTK EETKMRAAEE AAQAKTEKMK RVAERKNEHE ERDQRERKIR KPKQKKDNAT IASRSKLKKR LTKVKQNYFL HFFDKTRNSL DDCSTPLSIC LPL // ID A0A087H176_ARAAL Unreviewed; 336 AA. AC A0A087H176; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK35878.1}; GN ORFNames=AALP_AA4G048600 {ECO:0000313|EMBL:KFK35878.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK35878.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK35878.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK35878.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK35878.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 100 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 173 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 100 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 173 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 38614 MW; 2D52DEA8D1B6583A CRC64; MDNIEKTETS LGSSDSVLRL TVKPGDVTTT KPTLSNTSTS TPKFKGVVQQ QNGHWGAQIY AEHQRIWLGT FKTAGDAAKA YDSASIKLRN VDANSHRNFP WDDYTVHEPA FQETIPRDTV LNMIRDGSYP HKFREHLQSQ VVRNRNCVGS KQVQGGGRGG QELNQCFACR ELFQKELTPS DVGKLNRLVI PKKYAVKYLP FINENETERE DGEKGGDVKD VEVVFYDRSM RQWKFRYCYW RSSQSFVFTR GWNSFVKEKS LKEKDIIVFY NCDVPSNVKI SEGQSKTFLM IDVIEEANKM VHDSSDEEIN FMPKFEVEEP KSEEKKGFML FGVRIQ // ID A0A087H1B3_ARAAL Unreviewed; 590 AA. AC A0A087H1B3; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK35915.1}; GN ORFNames=AALP_AA4G053000 {ECO:0000313|EMBL:KFK35915.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK35915.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK35915.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK35915.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK35915.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 2. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.730.10; -; 2. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM00380; AP2; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF54171; SSF54171; 2. DR PROSITE; PS51032; AP2_ERF; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 93 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 341 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 413 526 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 93 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 341 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 413 526 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 590 AA; 68495 MW; 95556364058DC735 CRC64; MNATAETSNS SNDSSLPHKK RKRPLDDAPD NNALVKFKGV VHQKNGNWGA QIYTEQRRYW LGTFKTVADA AFAYDSASIK LRDFDANSPR NFPWNDLTVH EPAFQAGHTR DEVLNMIKDG SYQHKLREHI RARSHQKVPS DNNIARSKQS QGDKKSDKCF ACKELFRKDL TPSDVGKLNR LVIHKKHAVT YLPFINDYQK EREEGEKGGD VDDVEVVFYD RDLRQWKFRY CYWRSSQSFV FTRGWNGFVK EKNLKEKDVV VFSTCEFPSN VETLEGQSKS FLMIDVRCFS ENGFVAHEEI YVEHQRIWLG TFKSAADAAK AYDSTSIKVR GFDPNGHRNF PWDDFTVHEP AFQATKTRDE VLNMIKDGSY QHKFIEHLRN QSHKGASNNN VVGSKQREEG KESEKCFACK ELFEKKLTPS DVGKLNRLVI PKKSAVKYLP FINDYQKERE DGEKGGDVDD VEVVFYDRAL KQWKFRYCYW RSSQSFVFTR GWNGFVKEKN LKENDVVRFY TCEVPSNVEI SEGQSKKFLM IDVHCFSENG FVAHEEVNKT VHNHNSFEKT ENLFNSKLKV EETKSEEKKG GFMLFGVRIQ // ID A0A087H1K6_ARAAL Unreviewed; 222 AA. AC A0A087H1K6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor vrn1 {ECO:0000313|EMBL:KFK36008.1}; GN ORFNames=AALP_AA4G065800 {ECO:0000313|EMBL:KFK36008.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK36008.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK36008.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK36008.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK36008.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 222 AA; 25361 MW; C3B87CF6306CD62C CRC64; MDSAHNPFNK RARLFEDPED KDAEVIYPSI PESTEPVNKG YGGSTTIQSL FVETKPEATP KVLKKRGRKK KNPNPDDSST PRGDESENRS KFYESASARK RTVTAEERER AISAAKTFEP TNPFFRVVLR PSYLYRGCIM YLPSGFAEKY LSGISGFIKI QLGEKQWPVR CLYKAGRAKF SQGWYEFTLE NNIGEGDVCV FELLRTRDFV LKVTAFRVNQ YV // ID A0A087H1K7_ARAAL Unreviewed; 193 AA. AC A0A087H1K7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK36009.1}; GN ORFNames=AALP_AA4G065900 {ECO:0000313|EMBL:KFK36009.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK36009.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK36009.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK36009.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK36009.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 22024 MW; 08DF55D45F2EAF87 CRC64; MKTTRRSSVR NTSAASNGRL KPESEPAMKK FIKIILQSTI KEKMMKIPAR FVRCGPKFSD NVTIETPVGF KRSIRIKRIG NEVWFENGWS EFAEAHSISK GHFLFFHYKE NSSFLVTIFD VSAMEIDYPL DKVNVIKSDD DDDDEEKGFS GFENSDNNDS SEGVIDLDEL LKMNPRDNIK SEKITLIDDD VEG // ID A0A087H301_ARAAL Unreviewed; 249 AA. AC A0A087H301; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK36503.1}; GN ORFNames=AALP_AA4G132700 {ECO:0000313|EMBL:KFK36503.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK36503.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK36503.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK36503.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK36503.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 29138 MW; BC4BEE47A0465B44 CRC64; MSINQYSSDF HYHSLMWQQQ QQQQQYHQND VVEEKEALFE KPLTPSDVGK LNRLVIPKQH AERYFPLAXX XXDTVEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKHLD AGDVILFHRH RGDGGRFFIG WRRRGDSSSS SDSYRHLQSN ASLQYNYPHA GTQAVESQRG NSKTLRLFGV NMECQLDSDW SEPSTPDGST TCPTNHDQFH FYPQQHYPPQ YYMDISFTGD MNQARSPQG // ID A0A087H530_ARAAL Unreviewed; 286 AA. AC A0A087H530; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK37232.1}; GN ORFNames=AALP_AA4G231100 {ECO:0000313|EMBL:KFK37232.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK37232.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK37232.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK37232.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK37232.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 191 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 191 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 286 AA; 32946 MW; 9F36D93123E3AD38 CRC64; MAKNRAFGSI QQDKDKASFF KILAYEDLWS ESMRFIPHKF KTSVCKNHPL KVILKVVWGR SWTVSLSSFK GSYLMEKKGW EKFLNDNKLG DKEFLTFTNE GNNCLSVSIF KKNCKEMLTP RKTTIISSSS SFSNVKKEEM SDVSPIIAEG SRRGRKEKKE RADEEEARKK SKKMKKKADN NNVYEASSSL VPTFSFTIKP SKLIVAAIPQ DFANDHMPNE TTKFIIHDPN GKPWDVVYYY TEGQKLFSSG WRILARKYGL AVGDFCTFRL IKRREMVLEV IHASQM // ID A0A087H5N5_ARAAL Unreviewed; 581 AA. AC A0A087H5N5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA4G256900 {ECO:0000313|EMBL:KFK37437.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK37437.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK37437.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK37437.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK37437.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 490 577 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 581 AA; 65076 MW; 7B367336E9DB10FE CRC64; MANVDGDFRR SNDQLYMELW KSCAGPLVEV PRYGERVFYF PQGHMEQLVA STNQGVIDQE IPLFNLPPKI LCRVLCVMLK AEHETDEVYA QITLQPEEDQ SEPTSLDPPL VEPVKQKVDS FVKILTASDT STHGGFSVLR KHATECLPSL DMTQVTPTQE LVARDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDAFVFLRG ETGDLRVGVR RLAKQQSTMP ASVISSQSMH LGVLATASHA VTTKTLFVVF YKPRISQFII SVNKYMAAMK NGFSIGMRFR MRFEGEESPE RIFTGTIVGS GDLSSQWPAS QWRSLQIQWD DPSSVQRPNK VSPWEIEHFS PSASTSTPTQ PQSKSKRSRP IGSSSSTTLQ KQTLEITGSP IASNFLNSFP HSHESNPSLK PLFQDLSTNK PLFSSGLQCK KPETPVTSCC RLFGFDLMTA PIPPDKQLVS VDSNNSGSTK CQDPNSSSSP KEQKQQSSTR TRTKVQMQGS AVGRAVDLTL LRSYEELVNE LEKMFEIKGE LSVKDKWAIV FTDDEGDMML VGDDPWKSKK TLLDDEGRIV NLESEQRKVI V // ID A0A087H5P9_ARAAL Unreviewed; 316 AA. AC A0A087H5P9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK37451.1}; GN ORFNames=AALP_AA4G258600 {ECO:0000313|EMBL:KFK37451.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK37451.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK37451.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK37451.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002872; KFK37451.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 35735 MW; 47DFEEA3C0E60D5B CRC64; MMMTDLSLTR EDQEDGEAEA KKPLEEAERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDSSSNEKGL LLNFEDLTGK SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR CVGDSGNETS TTRLFIDWRK RPKVPEQPHF LTGAMFPRFY SFPTTTSTSS YNLYNHNQRH QFHHHGGYYN QHHQIPREVG YGYFVRSLDQ RNVINPAAMV IDSVPVMMHG GGEARAHEAV VGNAGKRLRL FGVDMECGEI GPMTNSTEEE SSSSGGGGGG GGSSSLFHLR LGSNNEDHDH FTKKGKSSLS FDLDQY // ID A0A087H7S5_ARAAL Unreviewed; 901 AA. AC A0A087H7S5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA3G079400 {ECO:0000313|EMBL:KFK38177.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK38177.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK38177.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK38177.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK38177.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 792 876 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 901 AA; 99695 MW; D40F8868387CB636 CRC64; MASLACVEDK MKISGLVNGG TTTTTTQSTL LEEMKLLKDQ SGTRKPVINS ELWHACAGPL VCLPQVGSLV YYFSQGHSEQ VAVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE IYAQMSLQPV HSERDVFPVP DFGLMRGSKH PTEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTAQP PTQELVVRDL HENTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL FIRDEKSQLM VGVRRANRQQ QALPSSVLSA DSMHIGVLAA AAHATANRTP FLIFYNPRAC PAEFVIPLAK YRKAICGSQL STGMRFGMMF ETEDSGKRRY MGTIVGISDL DPLRWPGSKW RNLQVEWDEP GCNDKPTRVS PWDIETPESL FIFPSLTSGL KRQLHPSYFA GETEWGSLIK RPLIRVPDSG NGMLPYASFP NNMASEQLMK MMMRPHNNQN ATSFMSEMQQ NVLMGHHGGF LGDMKMQQPM VMNQKSEMVQ QESKLTVNPS ASNTSGQDQT LSQSMNAPAK PEQPTLSGCS SGRVKHGHEQ SMEQANQVTT VTVCNEEKVN PLNQKPGGLS ALQADDPCPD ISQQMYPPQS DPVNGFSFLE TDELTSQVSS FQSLAGSYKQ PLMLSSPDSS AVVLPDSTNS SIFHDVWDNQ LNGLKFDQFS PLMQQDLYAC QNMCMSNSTN SNILDPPLSN TVLDDFCAIK ETDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQPFS RQDFPDNSGG TGTSSSNVDF DESSLLQNSK GSWQKLATPR VRTYTKVQKT GSVGRSIDVT SFRDYEELKS AIECMFGLEG LLTRPQSSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGMNDIKTSV S // ID A0A087H7Y6_ARAAL Unreviewed; 121 AA. AC A0A087H7Y6; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK38238.1}; GN ORFNames=AALP_AA3G087100 {ECO:0000313|EMBL:KFK38238.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK38238.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK38238.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK38238.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK38238.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 121 AA; 14049 MW; F820CF6982B1F085 CRC64; MLTERGGGGF ARDLSSNFLR KLPQDFLERT VHNLGDEVEL KMVWGSSWMI PLVRNERGDV FFEKQKWCEF VDDNYITQDH FLAFKHVRDN YLCVIIFDEN GIEIMEAPQP RSCCTSPGDS L // ID A0A087H8N7_ARAAL Unreviewed; 368 AA. AC A0A087H8N7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK38489.1}; GN ORFNames=AALP_AA3G119800 {ECO:0000313|EMBL:KFK38489.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK38489.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK38489.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK38489.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK38489.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 162 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 366 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 162 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 366 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 41552 MW; BA5478D5FC50033D CRC64; MKNGSNSTPR TPHFFKPLLP GFHCHLNIPI AFFSKYLAGT TNKGSVVVKL RSDASDVIWE VKMDGQRLTQ GWQKFVTSHD LRVGDILVFR HDGDLLFHVT PFGPSCCEIP YDDDDGDNGD GDDDDDDDDG DGDDVIQLSS ESNSEKYQHI REAGSSLDHS HFLVARVTAS NLSKDILLLP MDFSRSNGLM NRKCEIILLN EDGKPWRLLL GNYKLHGRVY IKSGWKSFCC ENRGRANGVL TFKLVQDGTT PVLQLYSSSS SSTSQYRFLT LSLTTYTFRT KKLCLPATFV KANGIENARK IILVDRYGIK RTTSLEPEDK YGSMRLGKEW REFCEVNGVY TGESFKLELI KEEEDTTIHL LKFCSKES // ID A0A087H8N8_ARAAL Unreviewed; 857 AA. AC A0A087H8N8; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK38490.1}; GN ORFNames=AALP_AA3G119900 {ECO:0000313|EMBL:KFK38490.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK38490.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK38490.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK38490.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK38490.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0019867; C:outer membrane; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR000184; Bac_surfAg_D15. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR Pfam; PF01103; Bac_surface_Ag; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 242 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 242 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 857 AA; 95813 MW; 6EE002AED31D856B CRC64; MENGSTSSPK TPHFFKPLLP GFHSHLNIPI AFFSKHLERT RNESSVVVNL RSDVSDGIWE VKMDGQRLTQ GWQNFATSHD LRVGDVLVFR HDGDLWFHVT AFGPSCCEIQ YDDDDVIQIS SDSDSEKDQY TREGEAGYSS DHSCFVARVT ASNLSKDMLF LPMDFSRSNG LNGQCEIILL NEDGKPWRLP LGCHKPNGWV YIKSGWKSFC CANRQRANDS LTFKLVQNGK TPVLQLYTPY RFLTLTLTPY NLKSSIMRLP ASFVKANGIE HARKITLVDR YGGKRTTCLK PEEKYGRIRL GKGWREFCEV NGVKTGESFE LELIKEEEDT ATHLLKINAE PLFRQTPMRV HDVIVRGNDK TKDNMIKAEV AALREATTLQ ELCDASEVAN SNLRALGILY SVCIDFDSGP PELPGTTNVV IEVVECKSLP IINFNYDTSP KAEVAGVREA TTLKELREAS IVAQSNLRAL GIFDSVSIEI YSELPSTTNV VFKVVESKTV IDFYRIPKVI LSGFDFSVKS KNIFGYGDIW DGSVNYGDDA SEFSLGMYFP RILGLRNPFT PRLHLSNQDW RKFSSYKERF LGVSLDLLST EYHELVYTAG WRSLIDPSHA ASKSIKRQLG HSMFSTLKYT FEVDERDSTL RPRSGYAFTS TSQIGGLAPN SLSLRFLKQE FDLRYAVPFG FYHAALNFGV SGGVIFPWGS GYQNCPSSLP ERFFLGGDSS FVDILGGPSA LWGFKNRGVG PNEPKSKGDD KRDFVGGDAA VTAFADLSFD LPVSWLRENG IHGHVFGCAG NAAKLSENEF RNFSGLKFLE TCRTSVGAGI VWLTSLFRME FNYCHVLKKQ EHDRAGSGFS VSISKPS // ID A0A087H944_ARAAL Unreviewed; 346 AA. AC A0A087H944; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK38646.1}; GN ORFNames=AALP_AA3G142000 {ECO:0000313|EMBL:KFK38646.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK38646.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK38646.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK38646.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK38646.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 40624 MW; C2558B53EB49DDE7 CRC64; MVETVSSYER KDLEFFKVFL PEFSSHELVI PPAFIDILEK PLPNEVSLLD EIGRVWCVET KTQDTEERFR VVFDKGWNVF AKDQSLEFGD FLVFNYDGDS RFSVTIYAND GIKKDLGITE RSRVSVDKEP VDSFTKPERR KDCGKKRPVD SFTKPERRKD CGKKRKRKQD SVKEEPIDDL VENEPEYFST SKAKRQHREK TRREDNRVRD PCGISSRDPE KKQRRFEEPK NPHFLRNITD SSLQKLEIPI TFLKSNGIEL EEDIELCDDN GKKWPMKIVN YVRGVKFSSE SWVCFCKSHK LMKTTNKFLF EFIVASNGRC NEIRIRIVSG RLLTTMTKSQ YQVLVM // ID A0A087HA87_ARAAL Unreviewed; 345 AA. AC A0A087HA87; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK39039.1}; GN ORFNames=AALP_AA3G193000 {ECO:0000313|EMBL:KFK39039.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK39039.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK39039.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK39039.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK39039.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 40337 MW; B2BE2089D62BD888 CRC64; MGRKSGFDRT KEERKKLSFY KIFQSADLSS ESMRAFPYNI VKSIPEEDFC YKMVIKAQWG SSWEVEVSKN PRFYYMEKLG WNQFVSDNAL GGNEFVTFTH KRKMCFHVNI YEQNGKEIVN PRKPVTMASA SRSRKEQTES IYKDVKKEEE SCESMEEIDL GVPKKKAEEY KTSKKIKSKK VVTDVEEVEL KMRKKMKSKK VVNGVEIGES SRGVERIMRK KKAEKSKTSK KKRKQKRKSK VENGIPEFTI TIKKSYLKFL AIPKDFVEDH IRHESKMVMV HHPDGKGSWK ALCLVRKLRT IFSRGWSKLA REYPLLIGDR VTFKLVEPTE FILVKSKKAK EEITP // ID A0A087HAS5_ARAAL Unreviewed; 339 AA. AC A0A087HAS5; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor vrn1-like {ECO:0000313|EMBL:KFK39227.1}; GN ORFNames=AALP_AA3G216400 {ECO:0000313|EMBL:KFK39227.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK39227.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK39227.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK39227.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK39227.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38959 MW; 64CD25230564F0F3 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKAENKIW FHDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIYPSSVY PSTLPDSTAP ANKGYAGTAI QSLFTGPVKD EEATPTPKVP KKRGRKKKNA DPEEINSSAP RDDDPENRSK FYESASARKR TVTAVERDRA INASKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNE // ID A0A087HAT7_ARAAL Unreviewed; 305 AA. AC A0A087HAT7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK39239.1}; GN ORFNames=AALP_AA3G218400 {ECO:0000313|EMBL:KFK39239.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK39239.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK39239.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK39239.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK39239.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 35010 MW; 032C2C8A1B01E216 CRC64; MVESEQSYEQ IRLKRVEENK KRMEEFNLHK IAQSLRVFSS PAKPRTPRFP VEFAEVRRSS RAKNPPPSYR ELGIEPLERP RRSYQRRDLL NRVYASDEAR VYAIDRAEML QSSLEQEFPS FVKPMLQSHV TGGFWLGLPR QFCKSHLPKR DEMITLIDEQ DEEFETKYLA DKNGLSGGWR GFSIDHQLVD GDAVVFHLIT PTTFKVYIIR IDGEANSDSD GSEDEENDTE SNNDSDGSED EVNDSESNND SDGSEDEEND SESNNDSDGS EDEENDSESN KKQEEIALEA KQLRSSSKRK RGGRK // ID A0A087HCD2_ARAAL Unreviewed; 736 AA. AC A0A087HCD2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK39784.1}; GN ORFNames=AALP_AA3G287300 {ECO:0000313|EMBL:KFK39784.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK39784.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK39784.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK39784.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK39784.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 591 693 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 591 693 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 736 AA; 80888 MW; 69D17DFB73D71049 CRC64; MIVSTSGERI IHGSITPMKT LHVAENGGDL TEDCGILAGD ADEAVLMDDV GREIWLADHG GDHNHGHGDD DLIVHHDPSI FYTDLPTLPD FPCMSSSSSS STSPAPVNAI VSSASSSSAA SSSTSSAASW AILRSDGEDP TNNQNQYGSG NCDVESSAAL QSTASMEIPL ESSQGFGCGE GGGGGGRDCI DMMDTFGYMD LLDSNEFFDT SAIFSTDDDT QNPNLMDQTL ERRDEVVVPM VENSSGGDMQ MMNSSLEQDE DLAAVFLEWL KNNKETVSAE DLRKVKIKKA TIESAARRLG GGKEAMKQLL KLILEWVQTN HLQRRRSNGN NNNITYQQSF QQDPFQNPNH NNNNNLIQPS DQTCFSPSTW VPPPPQLQPQ QAFVSDPGFG YMPAPNFPPP QEYLPLLESP PSWLPPQSGA MPHQQQFAMP NSQYSPFQDT GGGGFTGYNM NPYQYPPYLP SGQMRDQRLI RLCSSATKEA RKKRMARQRR FLSHHHRHNN NSTQNQTQMG ESCAAVASQL NPVTTTPTGG TWMYWPNVSA VPPPVSAQLP AMETQLPTMD RAGTASAMPR QQVVPDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISLAM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG DFVKTNGLQE GDFIVIYSDV KCGKYLIRGV KVRQPAGQKP EAPPSTAAAT KRQSKSQRNI NNSPSANMVA SPTSVK // ID A0A087HD26_ARAAL Unreviewed; 291 AA. AC A0A087HD26; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK40028.1}; GN ORFNames=AALP_AA3G320700 {ECO:0000313|EMBL:KFK40028.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK40028.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK40028.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK40028.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK40028.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 33290 MW; 09192D2476161681 CRC64; MKNVDFLSCK EEREQDGFFK VLQGADISSE IKRAIPHDLV KTLSENDLSR KMKIKTEWGR SWKVEISKNP RFYFMEKAGW ETFVRENFLG DSELLTFIHK GKMRFTLIIY NKDGKEMLQP RQAAPFLASS SRIKTEDVKK EEVVVSSELS SLDPVTPAAE SNGRRKLNFG KMKAEESQSS KRAKTKFRDS AGASSSSATG FTISIKKSYL NFLAIPVSFA KDHMQEGRTM FKIHDSEMKK SWDVAYVKRN TNTVFSAGWI QLVKEYPLRL GNTCKFTVIN PTELRLDVLK P // ID A0A087HD27_ARAAL Unreviewed; 268 AA. AC A0A087HD27; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK40029.1}; GN ORFNames=AALP_AA3G320700 {ECO:0000313|EMBL:KFK40029.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK40029.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK40029.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK40029.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002871; KFK40029.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 268 AA; 30631 MW; 7902870C34F49E5B CRC64; MALLLLFVNR AIPHDLVKTL SENDLSRKMK IKTEWGRSWK VEISKNPRFY FMEKAGWETF VRENFLGDSE LLTFIHKGKM RFTLIIYNKD GKEMLQPRQA APFLASSSRI KTEDVKKEEV VVSSELSSLD PVTPAAESNG RRKLNFGKMK AEESQSSKRA KTKFRDSAGA SSSSATGFTI SIKKSYLNFL AIPVSFAKDH MQEGRTMFKI HDSEMKKSWD VAYVKRNTNT VFSAGWIQLV KEYPLRLGNT CKFTVINPTE LRLDVLKP // ID A0A087HGQ9_ARAAL Unreviewed; 345 AA. AC A0A087HGQ9; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Ap2 erf and b3 domain-containing transcription factor rav2 {ECO:0000313|EMBL:KFK41311.1}; GN ORFNames=AALP_AA2G113800 {ECO:0000313|EMBL:KFK41311.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK41311.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK41311.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK41311.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002870; KFK41311.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 118 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 184 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 118 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 184 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 38795 MW; 00857C290864C80D CRC64; MVSSCIDEIS STSESFPTAK KFSPPPPPPA ALRLYRMGSD GSSVVLDSEN CVETESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAAHS YDIAARKFRG RDAVVNFKTT LDDDVLAFLE AHSKAEIVDM LRKHTYADEL DQSNKRRILS VDVNGKPKVT SQNDSVSRTR EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPLSPSPSV TKGVLINFED VTGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV TFERSTGPDR QLYIDWKIRS GPSNNPVQVV VRLFGVDIFN AKPNDVVAVC GGKRSRDVDM FALRCSKKQA IINAL // ID A0A087HJ56_ARAAL Unreviewed; 1146 AA. AC A0A087HJ56; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA2G218800 {ECO:0000313|EMBL:KFK42158.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK42158.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK42158.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK42158.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002870; KFK42158.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1019 1112 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 502 523 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1146 AA; 126733 MW; F62C92202347AE0A CRC64; MCAGDRRNIN SELWHACAGP LISLPPAGSL VVYFPQGHSE QVAASMQKQT DFIPSYPNLP SKLICMLHNV TLNADPETDE VYAQMTLQPV NKYDRDALLA SDMGLKLNRQ PNEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPALDFSMQP PCQELVAKDI HDNTWTFRHI YRGQPKRHLL TTGWSVFVST KRLFAGDSVL FIRDGKAQLL LGIRRANRQQ PALSSSVISS DSMHIGVLAA AAHANANNSP FTIFYNPRAA PAEFVVPLAK YTKAMYAQVS LGMRFRMIFE TEECGVRRYM GTVTGISDLD PVRWKSSQWR NLQIGWDESA AGDRPSRVSV WDIEPVLTPF YICPPPFFRP RFSGQPGMPD DESDMESALK RAMPWLDNSF EMKDSSSTIF PGLSLVQWMN MQQQNGQMPA GAAAQPGFFP SMLSPTAGMH NNLGGTDDPS KLLSFQTPQG GISSSNLQFN KPNQQGPMSQ LPQPPTTLSQ QQQLQQLLHS SLNQQQQQQQ TQSQQQQQQQ QQQSLQQHHQ QALQQQHQQA LQQQTQQQQL RTQPVQSQSQ PQTQPQQLQP QKLQQPQLPQ NQLYNGQQAA PQLQAQQASM HHLQPQLVSG SMASSVIVPP SNSLNQSFQQ QQQSKQHHQG HHHLGASTSQ SSLIETSKSS SNPMSMTAQD TQFPRQVEQQ QPPGLVKGHN QQTLLQQKAH QPQSQSQTQV QQMYQQSLLE QPHLQFQLLQ RLQQQQQPQQ QFLSPGSSML QSQLLHQQLQ SQQMQQLPPL SQSQQFPSSC TNNGLSTLQP PQMLVNRPQD KQNQTVGGGV RAYSGITDGG DAPSSSTSPS TNNCQISSSG FLNRSQSGPA ILIPDVAADM SGNLVQDLYS KSDTRLKPDL VCQQKSKATL TDHQLEPSAS GTSFGLDGGD NNRQQNFLAP SFGLDSDSRN SLLGGANVDN SFVPDTLLSR GYDSQKDLQN MLSNYGGVTN DIGTEMSTSA VRTQSFGIPN VPAISNDVAV NDAGVLGGGL WAAQAQRMRT YTKVQKRGSV GRSIDVNRYR GYDELRHDLA RMFGIEGQLE DPQTSDWKLV YVDHENDILL VGDDPWEEFV NCVQSIKILS SAEVQQMSLD GNFAGLPVTN QACSGGDSGN AWRGHYDDNS ATSFNR // ID A0A087HN89_ARAAL Unreviewed; 340 AA. AC A0A087HN89; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Ap2 erf and b3 domain-containing transcription factor rav2 {ECO:0000313|EMBL:KFK43591.1}; GN ORFNames=AALP_AA1G146100 {ECO:0000313|EMBL:KFK43591.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK43591.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK43591.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK43591.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002869; KFK43591.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 111 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 111 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38444 MW; E189516BE3C5273D CRC64; MEVSSVDEST TSTGSICETT PAKPPVSLYR MGSGTSVVLD SENGVEAESR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAVHR FRGRDAVTNF KDVKLDEGEI EFLNSHSKSE IVDMLRKHTY NEELEQSKRR RNGNGNNVRN TTKTTALCNY ETTEFRSAEP LFEKAVTPSD VGKLNRLVIP KHHAEKHFPL PSSNVSVKGV LLNFEDVNGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVSFSR SDGQDQQLYI GWKSRSGSDL EPGRVLRLFG VDISPEKSLR NDAVGNKRVN DSIEMLSLVC SKKQRIFHAS // ID A0A087HPL0_ARAAL Unreviewed; 1079 AA. AC A0A087HPL0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AALP_AA1G210900 {ECO:0000313|EMBL:KFK44062.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK44062.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK44062.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK44062.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002869; KFK44062.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 951 1044 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1079 AA; 119573 MW; 37E5B042D5E34682 CRC64; MKAPSNGFHP NPTEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEVEPVITP FYICPPPFFR PKYPRQPGMP DDDLDIENAF KRAMPWMGDD FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG AATTQLPSAL SSYNLPNNFG SNDPSKLLNF QSPNLSPAHS QFNKPNMGNH ISQQMQAQPA MVKSQQQQQQ QQQMQQQVQM SHQQLQQHHQ QQQQGVYNTG SVNNGASVAT NQVSCQNPQQ SIAFSQSQLQ QQSMLSNGAK MTHQNIVSAG NKGSPQMTSY AQEMQYQQQL ELHNSSQLLR NQQEQSSLHS LQQTMSQNPQ QLQMQQQSSK PSPSQQLQLQ LLQKLQQQQQ QSMPPVSSSL QPQLLQQTQS HQLQQLLSSQ NQQPLAHGNN SFSASTFMQP PPQIQVSHQP QGQMNNKPLV AAGRSHSGHT DGEAPSCSTS PSANNTGHDN VSPTNFLSRN QQQVSASDSV FDRASNPVQE LYTKTNSRIN QGTVNLKSAA EQFKFKGAVT DQIDVSTAGT TYCPDVVGPA QQQQTFPLPS FGFDGDCQSH HPRNNLAFAG NLEAVTTDAL YSQKDFQNLV PNYGNAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GINDSGIMNG GLWPNQAQRM RTYTKVQKRG SVGRSIDVTR YSGYDELRHD LARMFGIEGQ LEDPQTSDWK LVYTDHENDI LLVGDDPWEE FVNCVQNIKI LSSAEVQQMS LDGDLVAIPT TNQACSETDS GNAWKVHYED TSAAASFNR // ID A0A087HQZ7_ARAAL Unreviewed; 347 AA. AC A0A087HQZ7; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Ap2 erf and b3 domain-containing transcription factor rav2 {ECO:0000313|EMBL:KFK44549.1}; GN ORFNames=AALP_AA1G271200 {ECO:0000313|EMBL:KFK44549.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK44549.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK44549.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK44549.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002869; KFK44549.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 110 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 173 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 110 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 173 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 39042 MW; 69D6AEF27EA106AB CRC64; MDYSCVEDTS TTSESISPSP AAMRLYRMGS GGSSVVLDTD QNGVETESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEQEAA ESYDIAARKF RGRDAVINFK SLVRNDAESV FLDTHSKSEI VDMLRKHTYK DELQQSKRKF LDNGKLKGNE NDVVLRGVRE FLFDKSVTPS DVGKLNRLVI PKQHAERHFP LPAFTTTETV TMTMTVASPT KGVLINLEDR TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLRAGDLVC FERSTGPDRQ LFIDWKVRSG TVQNVVRLFG VNIYSDTKPN DVVEECGGGG GGKKRYRGGA DLLALGCSKK QAIINVL // ID A0A087HR27_ARAAL Unreviewed; 536 AA. AC A0A087HR27; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK44579.1}; GN ORFNames=AALP_AA1G277000 {ECO:0000313|EMBL:KFK44579.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK44579.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK44579.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK44579.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002869; KFK44579.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 149 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 261 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 431 532 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 149 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 261 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 431 532 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 536 AA; 60247 MW; 5B8AFF65D9A7CF29 CRC64; MEGRSLYSPI NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR KDQNKVAKLI SDASDKTWLV KVDGLKLTDG WEEFAVAHDL RVGDITVFRH EGEMVFHVTS LGPSCCEILY TSSPSEESDD QTNIASGLSS TVMKKSRRNK LNFSSNHSRF VTKVSVSSLR NDQLYLPLNF ARRNGLNKMS GQKIVLVNEE GGSWNFTLKY NKADMHTYVK PGWRRFCAAN GMSHGHYTFK LVRKSGPPVI RLCRAEHRPQ AESTSSTHYS FYVGSVTLSS LKRDKLYLGR NFVNANGLDK GCREIDLKNE WGRRWTLTLN HYESINYTTI GPGWKTFCQV NGIKAGDSFK FKLVGTGEKP ILSLYPTDSN RDKTPLESPE DSDDVISLSS NTSSRDDSSE SQGSEWESLG DESISQECLE MEKEKCSARC RASSSYSQNR FVTLTLTPYA VTKYKLFLPM GFSRVNGINK PGKITLLGQD GVKWVVDLLQ HKRSGCKRSG VMRLGKGWRD FCGAQGLKLG DSFVLELFWE DEASPVLKFC AKLNSV // ID A0A087HRE2_ARAAL Unreviewed; 351 AA. AC A0A087HRE2; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KFK44694.1}; GN ORFNames=AALP_AA1G291200 {ECO:0000313|EMBL:KFK44694.1}; OS Arabis alpina (Alpine rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; OC Arabis. OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK44694.1, ECO:0000313|Proteomes:UP000029120}; RN [1] {ECO:0000313|EMBL:KFK44694.1, ECO:0000313|Proteomes:UP000029120} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120}; RC TISSUE=Leaf {ECO:0000313|EMBL:KFK44694.1}; RA Willing E.-M.; RT "The reference genome of Arabis alpina."; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002869; KFK44694.1; -; Genomic_DNA. DR Proteomes; UP000029120; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029120}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029120}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 155 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 40119 MW; 707106A62FB187EC CRC64; MDNFLPFSSS NANSVQEQHS MDLTNNFSHF PTFHTYDHQH HMLPPYANVA CSSEGFPQIP VMQTGCEFGS MVCNPGLRQE RGGFSDPHMT KMARINRKNA MIRSRNNSSP NSRANDLVES RRQMMLNMKK NAEIAATKDL YRYSTYDNKK LRVLLVKDLK NSDVGSLGRI VLPKRESEAN LPKLTGKEGI IVEMRDADSS SSWSFKYKFW SNNKSRMYVL ENTGEFVKKN GVETGDSLTI YEDENKNLYF SITKSEKHTE RNENVLMEVN PNYYGGLMFD YLPRDEEEAS IEMLIGNLND HYPITDDLMS ITLDLQNHIP APSSSPLVGH MTNPSHMGPS NDHETFNDFN W // ID A0A087SJH0_AUXPR Unreviewed; 285 AA. AC A0A087SJH0; DT 29-OCT-2014, integrated into UniProtKB/TrEMBL. DT 29-OCT-2014, sequence version 1. DT 07-JUN-2017, entry version 10. DE SubName: Full=B3 domain-containing transcription repressor VAL2 {ECO:0000313|EMBL:KFM25874.1}; GN ORFNames=F751_1488 {ECO:0000313|EMBL:KFM25874.1}; OS Auxenochlorella protothecoides (Green microalga) (Chlorella OS protothecoides). OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Chlorellaceae; Auxenochlorella. OX NCBI_TaxID=3075 {ECO:0000313|EMBL:KFM25874.1, ECO:0000313|Proteomes:UP000028924}; RN [1] {ECO:0000313|EMBL:KFM25874.1, ECO:0000313|Proteomes:UP000028924} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=0710 {ECO:0000313|EMBL:KFM25874.1}; RX PubMed=25012212; RA Gao C., Wang Y., Shen Y., Yan D., He X., Dai J., Wu Q.; RT "Oil accumulation mechanisms of the oleaginous microalga Chlorella RT protothecoides revealed through its genome, transcriptomes, and RT proteomes."; RL BMC Genomics 15:582-582(2014). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KL662123; KFM25874.1; -; Genomic_DNA. DR RefSeq; XP_011398770.1; XM_011400468.1. DR GeneID; 23612879; -. DR KEGG; apro:F751_1488; -. DR Proteomes; UP000028924; Unassembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000028924}; KW Reference proteome {ECO:0000313|Proteomes:UP000028924}. FT DOMAIN 7 107 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 285 AA; 30830 MW; 3AA07CDDBEBFC444 CRC64; MGTAVLFEKV LTGSDASGNG RIVIPKGQAE SHFPEIEAQT GQNFVVMDTY GKKHTFRFRF WINNASRMYL LENTQDVLNR YAMQAGDVLI FSRSPEGQYC VCGRQGTKED VSRKTATKRL TEGASSKRGG KTSKQPHTDL ARTKRMKSKH EASQVQSVYS SYWSGYSLPP RRDGVFRAVP NASGHETGKV MAQCGCWTAI VDLCGEAFQA FFETAESAAE ALEAALHAPP MPPPPMPPPA PLPAEPRHPL APRASLGQLA EAAAMMPGLS HMSGRNLGPP LGLAA // ID A0A096UL55_WHEAT Unreviewed; 600 AA. AC A0A096UL55; DT 26-NOV-2014, integrated into UniProtKB/TrEMBL. DT 26-NOV-2014, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2; TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2; TRIAE_CS42_1DS_TGACv1_081019_AA0256850. DR Gramene; TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2; TRIAE_CS42_1DS_TGACv1_081019_AA0256850.2; TRIAE_CS42_1DS_TGACv1_081019_AA0256850. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 251 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 251 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 545 586 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 600 AA; 66473 MW; E16937DBA9D72EB8 CRC64; MAIDEPAKSK RGAPAGDPHS AKSKTGQKMV HRRRPLLDEG SSSRNEDGDG DDDFEPMAMG GTPAGYPPHS ARTKMGQKMS LAHRRLSLLD DGSSISRHIA AAAAAADDVG GGSEQMGEEF AVDVAQKNTA VDDSDDPDGS EDDFVPLIMM RTKNVKSEPG KHPGLRYKHK TQRTINKTYK RKKTGRSAGP VYAKRKVEKK PRLVGSNNIS KISDDDGQKK YASYSVLGFY ATAFDRALEV EKKLPAEGPS FVKLMQISHV VRVFWLGVPV SFCREHLPNH DVTIVLEDED GHRFDTNYLA RKQGLSGGWN RFATRHHLKV GDAVVFQLVE PTRFKVYILR ESKFSTTDGA LSLLSLDTSM ENNMPEKGED TSDEDAKSRE DPEVTKVVTN KASDDDSNDL FSEAAANGGV GSPDPDPDFD AVKTFRTFKM AIDSSVIDHK LVQDRLLWTY YKLCGDRKAF LHRRLPKHIN LTLAAGVIVE TASIAEGIRS YPSSCSSCED LAAWKKTLES FELLGMDVGF IRERLDELLF LLDARSSDDH PPEGYEEVKL ERARAAEKVR ALESKMASLK DALKDMEMEM EEIAEKRRGH ALLQLAAAPW // ID A0A096UQ98_WHEAT Unreviewed; 217 AA. AC A0A096UQ98; DT 26-NOV-2014, integrated into UniProtKB/TrEMBL. DT 26-NOV-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1; TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1; TRIAE_CS42_4AL_TGACv1_288999_AA0963070. DR Gramene; TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1; TRIAE_CS42_4AL_TGACv1_288999_AA0963070.1; TRIAE_CS42_4AL_TGACv1_288999_AA0963070. DR OMA; RIRREHM; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 23499 MW; C8BE9BD7C3740484 CRC64; MALTAAWESR GAAQEGGGGG VELARSGKGS NGEERIRREH MFDKVVTPSD VGKLNRLVVP KQFAERHILP RLLGGAARAA CPGAVLRFED GRGGGKAWAF RFSYWGSSQS YVMTKGWSAF VRDRRLAAGD TVSFCRAGAR LFIDCRRRGA GIVASAPVTR LLVPAVVPRV VTLMPQRSTP SDERAPRGRC VRLFGVDLEL AGAQPLPLDL QLALMRR // ID A0A096USK9_WHEAT Unreviewed; 457 AA. AC A0A096USK9; DT 26-NOV-2014, integrated into UniProtKB/TrEMBL. DT 26-NOV-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2; TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2; TRIAE_CS42_5BL_TGACv1_404936_AA1315590. DR Gramene; TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2; TRIAE_CS42_5BL_TGACv1_404936_AA1315590.2; TRIAE_CS42_5BL_TGACv1_404936_AA1315590. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 391 457 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 391 457 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 457 AA; 51459 MW; D2B31CA934BE353A CRC64; MGLSSNCAKT IKVQQCVKLS DSNYLHINDE LAGCFGTEDH GDGRTALVLS PFGKNVWPVK VDRDAKGAFL GDGWPQFVAA HGIGVGWYLV IRHEGCGVLT LKAFNSSFVI KEFGLTITVL SPAEIENAFA RKPQFIVPLQ RSFMEKMPIP PEFLQRGYIS EEDLNRPRPI ATFLTSWHIE LKKDGPNVFF TGSEWPKFLA YFEIAETDVL LIKYQGCMNF SFETFPNGNN EHTEEKISSS QQSEQSPAAQ CQEEEHVSTR RRTQSSGITP GAQSQEEEHV STRTRKQSNG KTPGAQSQEE EPVSTQKRKQ SNGKTPGAQS QEEEHVCSRK RKQSEVKSML DGPTTSQHRK KALCELGSTG SQAWLRKEIN GLALKRYLHF PARFGFLERC KITLKSVERN KSWEVEGVNY HPGTNRSYNC LTRGWKAFCK ENELKAGDVC TFKVIKSTLW HVVIDRC // ID A0A096UTJ4_WHEAT Unreviewed; 361 AA. AC A0A096UTJ4; DT 26-NOV-2014, integrated into UniProtKB/TrEMBL. DT 26-NOV-2014, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3; TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3; TRIAE_CS42_5DS_TGACv1_457381_AA1485750. DR Gramene; TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3; TRIAE_CS42_5DS_TGACv1_457381_AA1485750.3; TRIAE_CS42_5DS_TGACv1_457381_AA1485750. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 243 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 243 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 40723 MW; 8D7567643DF65937 CRC64; MLDGLDDMDG VEDVRFDELI GMQGVVFHLV GNAITRIPDK FASSFIRQMQ TSEGLDLKLK APSGETWHVG VSKVANELFL RSGWGGFAKA HELQENDLLL FTCTGNASFE VLIFDPSGCE KLSPLFAGRM RKHFDNMVGQ GGVEQYPDSD DTRVPSQFVG SPQKASTSRK CSGKTKSSKE LPESPSSTSC HVKLEATEEQ KSDDDTCTEP GYYSSRTASQ LNEDEKQEIM ERASIRPGNP AFVVVLLMTH LQRKNNFLTI PSKFAADHLQ SKPREVLLLR LSREDKWHVR CYYSSRTRCF NCQRWVKFVR DNGLREGDVC VFELIKGARK MTTMTVHVAR RKKDGRFVAG QWAARGRRLR L // ID A0A096UWA5_WHEAT Unreviewed; 1030 AA. AC A0A096UWA5; DT 26-NOV-2014, integrated into UniProtKB/TrEMBL. DT 26-NOV-2014, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2; TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2; TRIAE_CS42_7DS_TGACv1_622375_AA2038600. DR Gramene; TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2; TRIAE_CS42_7DS_TGACv1_622375_AA2038600.2; TRIAE_CS42_7DS_TGACv1_622375_AA2038600. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 92 194 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 914 1007 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 92 194 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1030 AA; 114843 MW; 47CDC9726EEA2401 CRC64; MPPVGSLVVY FPQGHSEQVA ASMHKEVDII PNYPSLPSKL ICKLLSLTLH ADSETDEVYA QMTLQPVNKY DRDAMLASEL GLKQNKQPVE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELMAKDLHDI PWKFRHIFRG QPKRHLLTTG WSVFVSTKRL LAGDSVLFIR DEKSQLLLGI RRATRPQPAL SSSVLSSDSM HIGILAAAAH AAANSSPFTI FYNPRASPSE FVIPLAKYNK ALYTQVSLGM RFRMLFETED SGVRRYMGTI TGIGDLDPVR WKNSHWRNLQ VGWDESTASE RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGMPDDEG EVDSAFKRAM PWLGDDFALK DVQSQLFPGL SLVQWMAMQQ NPQMLPAGAP AVQAPYLNSS AMAMQDGMGT GNDDLMRRFN MQGQNIGLPN SQVGSKMDHP AMAQHQQQSH QLQQQQQVQQ SQQSSAVQQQ QAQLLQQNAI HLQQQQEHLQ RQQSLPQQQQ EHLQRQQSQP QQQLKTAASM PSMEQHKLRE QQPQGGQAVS QAQMLSQIFQ PSSSQLQQLG LPKSPTQRPG FPGLPTASSL QQPALGQAPQ VQQAAEYQQA LLQSQQQQLQ QLSQPEMQLQ LLQKIQQQNM LSQLNPQHQS QLMQQLSQKN QEYLQQQILQ HQLSGSDAMV QFKQSHQTPS NNITGSLTPQ QLVRSHSALA ESEDPSSSTA PSASRLSPMN SLSRTHQGSR NLTDMTTSPH IDNLLQEIQS KPDNRNKNDM QSSKEAIPVP NRYPVSDQLD ASSATSFCLD ESPREGFSFP PVCLDSNAQV DPRDNFLIAE NVDSLMPDAL LSRGMGSGKD ICNLPSGQRD HREVDNELSS AAFSSQSFGV PDISFKPGCS GDIAVNDGGM PSQGLWNNQT QRMRTFTKVQ KRGSVGRSID ITRYTNYDEL RHDLACMFGI QGQLEDPYRM DWKLVYVDHE NDILLVGDDP WEEFVSCVKS IKILSSVEVQ QMSLDGDLGG IPSQTQACSA SDDANAWRGS // ID A0A0A0K4S8_CUCSA Unreviewed; 322 AA. AC A0A0A0K4S8; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN43939.1}; GN ORFNames=Csa_7G073740 {ECO:0000313|EMBL:KGN43939.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN43939.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN43939.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN43939.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN43939.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN43939.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002928; KGN43939.1; -; Genomic_DNA. DR RefSeq; XP_004136984.1; XM_004136936.2. DR GeneID; 101206354; -. DR KEGG; csv:101206354; -. DR Proteomes; UP000029981; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 6 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 322 AA; 36466 MW; 0B6BCF29207B9315 CRC64; MVESNLTYEE CRRQRLEENK KRMEELNLNK LADAFKSSSP KSSPTKQLKR PRQTLDASSF SVRRSSRFSD KPPMNYKEVP IEPLPGIRRS YQRRDLLNRI YASDEERQYA IDRARDLQSS LESEYPSFVK PMLQSHVSGG FWLGLPVQFC KTHLPREDEI LTLVDEDENE FQTKYLADKT GLSGGWRGFS IDHQLVDGDA LVFQLTNPTE FKVYIIRTYN SADKEDTKEG SDATQLESSG KKNSKSSGHK SRANNSEDKG DNDENSDVFQ LGKGGKRSTR SSRGKSRANK SEDKSDTGTD SNVPQLGNSG KRITRSSSKG KK // ID A0A0A0K887_CUCSA Unreviewed; 693 AA. AC A0A0A0K887; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_7G329330 {ECO:0000313|EMBL:KGN44547.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN44547.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN44547.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN44547.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN44547.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN44547.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002928; KGN44547.1; -; Genomic_DNA. DR RefSeq; XP_004139643.1; XM_004139595.2. DR GeneID; 101205805; -. DR KEGG; csv:101205805; -. DR KO; K14486; -. DR Proteomes; UP000029981; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 675 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 693 AA; 77825 MW; AF3595CB0ED2EE06 CRC64; MTLYEENPGE SRKGLEGEDL YEELWKACAG PLVEVPVDGE RVFYFPQGHM EQLEESTNQE LNHQIPHFDL PPKILCRVVN IRLLAEKETD EVYAQITLYP EADQSEPQSA DPEPPERTRQ TVHSFCKILT ASDTSTHGGF SVLRKHATEC LPPLDMSQST PTQELAAKDL HGYEWKFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGDNGELR VGVRRQARQQ SLMPSSVISS HSMHLGVLAT ASHAVRTQTY FVVYYKPRTS QFIISLNKYL ETVKNGYEVG MRFKMRFEGE ESPERRFTGT IVGVGDMSPQ WSDSKWRSLK IQWDEPATIQ RPERVSPWEI EPFVPSASLN FTHPAIKSKR ARPVEIPPPE VTSGSAPSGF WLQGSTISHE ISQLSGTNEV QSSNNRVVWA LGQRKLDSNS SHCNPVANVE GIWPSPPLNI SLNLYPDSTF ERELVQQKHP LSSPYSSSVT SKPSSDLIQP DQLEKGSKPD ISLGCRIFGI DLKNNCSIVP TLERRSSCLM MVTDGAKEPV VTAVVTPQVD AGNLSQPSKE QQLSTELLTK GTQTKHISNL SSRTRTKVQM QGVAVGRAVD LTTLEGYEDL IDELENVFEI KGELRGINKW SIVFTDDEND MMLVGDDPWP EFCKMVKRIF ICSSEEVKKM SRESKIVSPS SLDSLDSERK TES // ID A0A0A0K8A1_CUCSA Unreviewed; 735 AA. AC A0A0A0K8A1; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN44572.1}; GN ORFNames=Csa_7G336510 {ECO:0000313|EMBL:KGN44572.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN44572.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN44572.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN44572.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN44572.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN44572.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002928; KGN44572.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 594 696 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 594 696 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 735 AA; 81172 MW; 04314AF0A85A4198 CRC64; MNDLVEFHSQ DLHAGFVKEQ QQEIMDHTQI WLHDHQQQHQ NHQTHQNFLS DNDDDALMFY SDFPPLPDFP CMSSSSSSSS TPAPVKATAS SSSSSSSSSA TSWALLKSDG DEITEDVKPN YDNNKLSSPV AENGFDCTDE MMMESFGYMD LLEDSNEFFD PSCIFQNEEQ QEQQEEKVVV VEEEDQEGNL EDLQLERFEE VEMEDLMMMH GGDESKDNSN NNINVEKLEN DVVEEEDMAK VFLEWLRSNR ETVSADDLRN VRIKKATIES AARRLGGGKE GMKQLLKLVL QWVQTNHLHK RKFRDLTVET DAHFLGFQNN PNSSSNLPWI QTPSPLPPPP LYSPSMIGYV PATGGDAYGA GRGFSDHYGQ LLDSSLSWSN SSSGNNNNNF SGQFGLPPSH FNSYVDNFAT GPPLPPPQPQ GFAAGYGGGR QFPYMGQYFQ GQGGGGGGGG GGGGGGSGGG GENGLVRLDS SATKEARKKR MARQRRFSVH HRHHGGHHGN GHQNQHPTQM NPNASDHCNM ATTAQPNAGN WVYWPSPTGA GASSTTSSGF PVDSSPLHAA DRSNSSLQNQ NYPPRIPSDR RQGWKPEKNL KFLLQKVLKQ SDVGNLGRIV LPKKEAETHL PELEARDGIS IAMEDIGTSR VWNMRYRYWP NNKSRMYLLE NTGDFVRANG LQEGDFIVIY SDIKCGKYMI RGVKVRQPGS KPESKRPGKS QRSHTTAAGN GSSPSATTIA TPKRH // ID A0A0A0KCC3_CUCSA Unreviewed; 361 AA. AC A0A0A0KCC3; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN46479.1}; GN ORFNames=Csa_6G096440 {ECO:0000313|EMBL:KGN46479.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN46479.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN46479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN46479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN46479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN46479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN46479.1; -; Genomic_DNA. DR RefSeq; XP_004140634.2; XM_004140586.2. DR GeneID; 101221141; -. DR KEGG; csv:101221141; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41511 MW; 932A311965B548D6 CRC64; MNFHKPDMEF LTKSTKEDQD QDQEEEEEED EDQEQDQDLV ACNFFPNSHS TQLTKQQDQD QDQESGNYEC QNEDHQPILM DLSLRMESNG FADVVEREHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD SSTNDKGLIL NFEDRHGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDIVSFHRAL PSHSVNDRLF IDWRRRRSDA PTPHHHHHHF SNPFLLRWGT TARHLPPPPP PPRRTTHHQH HLYPNYGFEI PNFGMSNINN TSMYYFRPPS SSSSLYRMGN GDEIVVNNQG CSSMGIINKP GSGAAKRLRL FGVNMECASP DGEGGGGGED VSNGGVPRRG KEPLSLNWDL L // ID A0A0A0KFK0_CUCSA Unreviewed; 309 AA. AC A0A0A0KFK0; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN48480.1}; GN ORFNames=Csa_6G489960 {ECO:0000313|EMBL:KGN48480.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN48480.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN48480.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN48480.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN48480.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN48480.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN48480.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 207 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 207 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 35779 MW; C63A850AEF826FB5 CRC64; MIPKKFITDY GKFLSNPICL KTPDGLEWKV ESTTTPNGTV WLQNGWQEFS NHYGLKSGSL LVFRLDGNST FHTLIFNQNC SEIQYSSNYI GHVESNQEEY TTRPQTEETE AKPEKIGFKI VVKKSYIEGR YNMLLPKYFA RRHLNEEFGK IEIENSDGMG WPMIYKWSQS RKVGFAYISS EGIISPPSPI LANNKNVEST TPNYDHFFKV NIHMKSYKNC VLNIPLTFAH NHLSSTMHTA KLMVGKKQWN VKLKHYERCI RFSGGWAEFF KQNDLKPGDS CLFKLLTKNE SYCVFKVKIF SKNLNLSDQ // ID A0A0A0KFX8_CUCSA Unreviewed; 802 AA. AC A0A0A0KFX8; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_6G291920 {ECO:0000313|EMBL:KGN47312.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN47312.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN47312.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN47312.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN47312.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN47312.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN47312.1; -; Genomic_DNA. DR RefSeq; XP_011657217.1; XM_011658915.1. DR GeneID; 101212503; -. DR KEGG; csv:101212503; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 169 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 674 758 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 169 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 802 AA; 88792 MW; 070E7224AA947F91 CRC64; MEIDLNQTAS EVGKNAYCYG NCEEGLCNCC LSSSTSSCSS NSSSTPVSSS TYLELWHACA GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFDL QPHILCRVIN VHLLANKEND EVYTQLTLRP LPELLGTGVA GKELEELALN GADGDGSGGS PTRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSCAN DLARVVKAIS TKSTFDVFYN PRAYHAQFII SCQKYVKSIN NPVSVGTRFK MRFEMDDSPE RRFNGVVVGI SDMDSFRWPN SKWRCLTVRW DKDSDHQERV SPWEIDPSVS LPPLSVQSSP RLKKLRTSLQ AAPPNNAFTG RGGFMDFEDS VRSSKVLQGQ ENVGIVSPFY GCDTVKRSLE FDVRSSAQQN QVSGGVEKLN IADYVKVHAN SSFTGFMESD RFLKVLQGQE ICSLRPPTSK PEYSLGVWGK FNLSDNSFNT FQSPNSNFYH MASNSAQKMY FPRSEMHSTG QAAMMLSNDS NFPRESALFN PSAVGANVIR TKMERTSRSL DRESLHLASA PPTLGSNMRN SKDEHVNDNA TGCKLFGFSL TTETATNVQS SGKRSCTKVH KQGSLVGRAI DLSRLNGYTD LISELERLFS MEGLLKDPDK GWRVLYTDNE NDVMVVGDYP WHDFCDAVSK IHIYTQEEVE KMTNGVISDD TQSCLDQAPL CMEASKSSSV GQPDSPPTAV RG // ID A0A0A0KG38_CUCSA Unreviewed; 294 AA. AC A0A0A0KG38; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN48478.1}; GN ORFNames=Csa_6G489940 {ECO:0000313|EMBL:KGN48478.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN48478.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN48478.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN48478.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN48478.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN48478.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN48478.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 228 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 228 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 33227 MW; FF588373264AA90F CRC64; MAKSVMAVVD PGSRIPSTLE FFKVFLPNSS SQSMSIPPAF VKYFNGRIPS EAIIRDQSRN SWHVTLEELK NIVLFKDGWQ EFVDSHHLKR GYFLVFQYDG SHVFDVKIFG KNGCKKELVS RISNPVPTVK VKDEPLSEED YSTSLTRCKR SDSEVRSTDS SGTAPKSRRR STSNLEEHSP SKTAKHISMK LPSPTPTFKH IVKHWSYKAI QIPQLIMVSN DILLKPNLVI IDEMGRSWVV KARPISRGRF SLTSGWGAFF IANSLTIDDE CTFEFVLDSN NLCGELKCCS NKKS // ID A0A0A0KG44_CUCSA Unreviewed; 430 AA. AC A0A0A0KG44; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN48483.1}; GN ORFNames=Csa_6G489990 {ECO:0000313|EMBL:KGN48483.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN48483.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN48483.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN48483.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN48483.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN48483.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN48483.1; -; Genomic_DNA. DR RefSeq; XP_004142019.2; XM_004141971.2. DR GeneID; 101221146; -. DR KEGG; csv:101221146; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 224 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 336 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 224 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 336 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 430 AA; 50001 MW; 8CEFB3336A1DB587 CRC64; MPSSPKFFRI VLHRNLEDPK MMIPKKFVED YGKLLSNSVN LKLSDGKEWR VGLRRATNGA VWLEEGWDKF SEHYCLEFGL LLVFKLFDGR RSSNFKVTIF DPTGVETKFI SPSPQIKEES DSDSDESLES LTLHGDLKKR KNVSVSCSQS RRKMRKDDLF TVKTELEEEE EEEECKYIFR EIPRCKERVI PKHEAKVSRK EQPSPEKVET VQRFSSKSDR KPSFEVVMRQ SNVQGRFNMV IPYDFAVKCL SEEVGTIELQ TTNGRSWQIL YKWRRTDRAA YAYISSGWKH FAEDNRLKEG DIGLFQLINK HIFLFTKLQN NSLPADGETA ATENPFFEVN ISSKSYENSF LNIPLKFANK YFSPEMHSAD LQVGNKKWNV MLKQYESYVR FSSGWGTFLG ENGLKDGDKC LFEMVNTEHC VFKVSFSRNV // ID A0A0A0KHG7_CUCSA Unreviewed; 605 AA. AC A0A0A0KHG7; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_6G405890 {ECO:0000313|EMBL:KGN47827.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN47827.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN47827.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN47827.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN47827.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN47827.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN47827.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 605 AA; 66714 MW; E97145C2116E23D6 CRC64; MDSVIDPMMN HDKHLDSQLW HACAGGLIQL PTINSKVVYF PQGHTEHAQG NVDFGNARIP SIIPCRVSGI RHMADPETDE VFAKIKLSPL ANNEFNLDNE DDLLIHNELK SQDKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VEPPVQTILA KDVHGEIWKF RHIYRGTPRR HLLTTGWSSF VNQKKLVAGD SIVFLRAETG DLCIGVRRAK RGIGCGIDYS PGWNPTNSGS SLVGYSDYMR ESEGRLGRRN SNGNLSGRVK VESVIEAAML AASGQSFEIV YYPCAGTPEF VVKASSLRSA MQIHWYSAMR FKMPFETEDS SRISWFMGTV SSIQAADPIR WPDSPWRMLQ VTWDEPDLLQ NVKSVNPWLV EVVVNMPAIH VSPFSPPRKK PRFPLQADSS GFGHLPMPSF STNIFDTTNP LQGITANKIP AGIQGARHTQ FGLSSPNLQI SKLLPGQFSP GLKHLDDATP LPGIRGEDIF AGMKNPDNCS LWLPMRNHIQ SSKESSKESS KESSKESKET KPAHIILFGQ LIFPNQQNSN SCSGDTMNAS DANQEKASNL SDGSGLSSQQ NGSLENSSEG GSTLYNGRMK NYIEN // ID A0A0A0KHK1_CUCSA Unreviewed; 899 AA. AC A0A0A0KHK1; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN49200.1}; GN ORFNames=Csa_6G517080 {ECO:0000313|EMBL:KGN49200.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN49200.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN49200.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN49200.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN49200.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN49200.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN49200.1; -; Genomic_DNA. DR RefSeq; XP_011658199.1; XM_011659897.1. DR GeneID; 101209415; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|SAAS:SAAS00430958}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; Zinc {ECO:0000256|SAAS:SAAS00430958}; KW Zinc-finger {ECO:0000256|SAAS:SAAS00430958}. FT DOMAIN 349 450 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 575 625 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 349 450 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99473 MW; BBC59DBBEC9C6279 CRC64; MSSALTTASS SSSPLSSKSC YNSDCKELRP DRSRKGWRLR TGDFAELCDR CASAYEEGRF CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILPLNPAWPP SLLFHSALPD RLKELSVKNW SQLAGSGPVP WRQAPSMFNS SLPSGELHHR APYEVDISAA LNKLNTSERL PVSLEKRKNE DFSERFLNGS LKPCGQDLCE NGTAGGIKCD DKPSSCSNMP KQSSFVKEDS STMQYGLNIP YAPPNEPSAR GRISGTHLRP TPLSSLPKQI HTNLQNGADS SNETQLRNGR PRGESRGKNY LLPRYWPRFT DQELQQISVD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPSISQ PEGLPLKVQD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRLEPEG KLVMGFRKAS ATADQENETN KTKNGAPVHG DAELADPNSW TKVDKSGYIA KEVLGAKPSI SRKRKNSTLG SKSKRLRIDN EDMIELKITW EEAQGLLRPP PNQVPNILVI EGFEFEAYEE APVLGKPSII PPDNTGERIQ WTQCEDCLKW RKLPASALLP SKWTCSDNSW EPERSFCSAP QELSTEQLEE LLSPGNSVAP VKKMKAAKLE PDNVEALEGL DTLANLAILG EGEASQTPGQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCLTV KRRFRTLMLR REKKQFEKEA ETMRQRHKFQ DEMFPDRSMD EESLTCSNTS TSKLMEEGKM NDGSDEDPNR NKPSTSPFKG QIDLNMQPER EEELSPGSDS GSMMKMLQDT GDRFLEQQRS NSGGTRSSSS DPLEPGGERE HKGESSSNVI DLSSNNLDAD KDHPATLSLN PSASMSTTG // ID A0A0A0KI50_CUCSA Unreviewed; 960 AA. AC A0A0A0KI50; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN48479.1}; GN ORFNames=Csa_6G489950 {ECO:0000313|EMBL:KGN48479.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN48479.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN48479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN48479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN48479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN48479.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN48479.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR015410; DUF1985. DR Pfam; PF02362; B3; 1. DR Pfam; PF09331; DUF1985; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 960 AA; 109266 MW; 3EC72CB18910906B CRC64; MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN VDTTELSGNS YDNIKENNMD TTELGGNLCD NIKENNVDST EHCGNLCDNI KDNNVDTTEE KQSPASVEPS RKKKKRKSAS FEVQEQKEET SEIDTDQDSR RGVETRQRKK IAEQSKKQGE DGKRKKRGKR GKKSGISGTS SEHDDEVDVH KEYPLLLPRS SWATTQRINL YSKLDVISII KNTLNERQLK KFKKSCFGNF LDLKISKFSS QLFYHLIRRQ CCSKNRNELW FNLEGRIHKF GMKDFALITG LNCGELPAID MSKIQKGKFN KRYFGGEKTI RRAKLHKVFT EMDKGRNKDV VKMAKLYILE MFILGKQIRT GINHEYTLLI DDKKQFDSYP WGRISYEITV DFVKKSIKSN DASAIGVGGF PYALLVWAYE TIPLLALNSN FLAMRISFGT PRMNNWAAGV HPEWKDLSEK VFQSEAFDVQ PLIATTTEME MPYMIPFGGV KPSNEKNISP VDQEHNSDAR TSYNKDHCNW KGSQSVSKDG VENFLFTKIV NIEGILGSLV HDIDNLKSFF HKMCGTANEA ADSEKMRKPL // ID A0A0A0KI77_CUCSA Unreviewed; 916 AA. AC A0A0A0KI77; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_6G524670 {ECO:0000313|EMBL:KGN49430.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN49430.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN49430.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN49430.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN49430.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN49430.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN49430.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 782 866 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 916 AA; 101827 MW; 10F3118233CC6355 CRC64; MRLSTAGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAISTNRE VDAHIPSYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLTAQEQKEP YLPAELGAPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPTG FPSFHGLKED DLGLNSQLMW LRGDGLDRGI QPLNFPGIGV APWMQPRLDA SMVGLQPEIY QAMAAAALQE MRTVDPAKAQ AASLLQFQQT QNLPNRPANF MPPQMLQQPQ PQPQPPQTFL QGDENQHLSH SQAQSQPTAV LQQEIKHQTF NNHPQQQQQQ QQQQQQQQQQ PQQQVFDHHQ IPSPMSTMSQ FSSASQSQAQ SLQTIPPLCR QQSFSDSNPN HVTSPIISPL HSLLGGSFSQ DESSQMLNLP RTNPMIHSST WPSKRAAIDP LLSSGNSQFV LSQGENIGTT PANISQNAFS LPPFPGRECS LDQGNVDPQS NLLFGVNIEP SSLLMQNGMP NLRGICSDSD STAIPFSSNY VNTAGTNFSA NPTGTGTPSN CNEDSGFLQS PENTGQVNPP TRTFVKVYKS GSFGRSLDIS KFSSYHQLRS ELAHMFGLEG ELEDPLRSGW QLVFVDREND VLLLGDDPWP EFVNSVWCIK ILSPQEVQDM GKRGLELLNS VPIQRLSNGS CDNYANRQES SRNMNSGITS VGSLEY // ID A0A0A0KID3_CUCSA Unreviewed; 698 AA. AC A0A0A0KID3; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_6G445210 {ECO:0000313|EMBL:KGN48157.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN48157.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN48157.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN48157.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN48157.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN48157.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN48157.1; -; Genomic_DNA. DR RefSeq; XP_004143252.1; XM_004143204.2. DR GeneID; 101217039; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 692 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 76609 MW; 8A1D752D4CADFB48 CRC64; MITFMDSKEK LKEVEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH SCAPVDFRNC PKVPSYTLCR VSAIKFLADP DTDEVFAKLR LIPINGSELD FEDDGIGRLN GSEQDKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGPE SSCGWNPAGG NCAVSYGAFS AFLREDDNRL TRSANGMNGN GSLMGKGKVK PESVTEAAKL ASNGQPFEII FYPRASTPEF CVKAALVKAA LQIRWCSGMR FKMAFETEDS SRISWFMGTI NSVQVSDPLR WPESPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSSMSPIH LAPFSPPRKK FRYPQHPDFP LDNQPPVPSF SSYLHGTGSP FGCPPDNNPA GMQGARHAHF GLSLSDFHVS KLQSGLFSIG YRSLDPAAGS TRLSGNVMTE KPSMSENVSC LLTMAHSTQA SKKFDGVKTP QLILFGRPIL TELQMSQSFS GDTVSPVGTG NSSSDGNGDK MTNLSDGSGS ALHQQGLPEG SAGENFQWYK DNCQEIDPNL DIGHCKVFME SEDVGRTLDL SSLGSYEELY RKLGNMFGID NSETLNHVLY RDVSGAVKHV GDEQFSDFIK TARRLTILTD SGSNNVGA // ID A0A0A0KJ00_CUCSA Unreviewed; 678 AA. AC A0A0A0KJ00; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_5G077780 {ECO:0000313|EMBL:KGN49710.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN49710.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN49710.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN49710.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN49710.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN49710.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002926; KGN49710.1; -; Genomic_DNA. DR RefSeq; XP_011654515.1; XM_011656213.1. DR GeneID; 101204612; -. DR KEGG; csv:101204612; -. DR KO; K14486; -. DR Proteomes; UP000029981; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 553 646 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 75395 MW; FCC986B20E421925 CRC64; MSFSAASNLP SGGPHSGLSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM HQGLEQQMPS FNLPSKILCK VVNVVLRAES DTDEVYAQIT LLPESNQNEV TSPDPPLPEP TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNQWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSTFLVS LNKYLEAQNH KLSVGMRFKM RFEGEEVPER SFSGTIVGLG DNASPGWANS EWRSLKVQWD EPSSILRPDK VSAWELEPLV ASNPLSTQPT QRNKRPRPTV LPSSSPDATV LGGWKPTVES STFSYAEPQR GRDLYSSPKF STAASNSLGF NANSSLGAVS SNNYWCNTNR VENIMDPSSH GANREPVEKK QNSRNGCRLF GIQLLGNSNV DEASPVSTPK MGGEDRLVPP IDTDFEQHSE PSNIHRSDIP SISCDADKSC LISPLESQSR QIRSCTKVHM QGIAVGRAVD LTRFNQYDDL LRKLEEMFDI EGELCGSLKK WQVVYTDDED DMMLVGDDPW NEFCSMVRKI FIYTTEEVKR LSPKIKLPLG GEAKLSKPDS DIIANHTEDQ SSIVGSDC // ID A0A0A0KJE0_CUCSA Unreviewed; 445 AA. AC A0A0A0KJE0; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN48482.1}; GN ORFNames=Csa_6G489980 {ECO:0000313|EMBL:KGN48482.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN48482.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN48482.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN48482.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN48482.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN48482.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN48482.1; -; Genomic_DNA. DR RefSeq; XP_004142020.2; XM_004141972.2. DR GeneID; 101221384; -. DR KEGG; csv:101221384; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 329 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 343 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 329 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 343 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 445 AA; 51074 MW; 1EFF67B86D54C519 CRC64; MSSSPKFFRM VLQRNLDDPK LMIPKTFVED YGKALSNWVN LKLSDGLEWK VGLRKATNGA LWLEKGWDKF SEHYCLEFGS LLIFTLLNGR RSSNFEVTIF DPTGVETKYV SSSPQLKEDS DTNADSGYSY SDSDESSESF REHSKKRKNA LVPCWLNRKK MRKDGSSTIK IEPADAEEEE ECNNVSRETP SCKKRVVPKH EVKASRKKQQ SPRKVETTQR FSSKSDHKPS FKVVMRRNNV QGRFNMVIPH DFAVKYLSEE SGTINLQITN GRNWQLLYKW CRTDRATFAY ISSGWKHFVE KNRLKEGDIG LFQLINKHNM LFTELQNNSL SPKKKTATTG NPFFEVDIVS KSYMNSYLNI PRRFAGAYFS PKMQSASLQV GNKKWDVSIK KYACSHVRFA AGWGTFHSEN GLEDGDTCLF EMVNTKLCVL KVSIFRKVST SVSMD // ID A0A0A0KKD5_CUCSA Unreviewed; 691 AA. AC A0A0A0KKD5; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_5G148790 {ECO:0000313|EMBL:KGN50008.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN50008.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN50008.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN50008.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN50008.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN50008.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002926; KGN50008.1; -; Genomic_DNA. DR RefSeq; XP_011654692.1; XM_011656390.1. DR GeneID; 101209208; -. DR KEGG; csv:101209208; -. DR KO; K14486; -. DR Proteomes; UP000029981; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 661 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 77024 MW; 8043F0F7BF82FC65 CRC64; MTYNGGDSYR QSCVSAQGCG RDDLYMELWR ACAGPLVDIP RVDERVFYFP QGHMEQLEAS TNLELNKRIP LFNLDSKILC RVIHIEPLAD HESDEVYAQI TLMPESNQNE PKSMDPCPPE PPRPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TLATPTQDLV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GELRVGVRRR ARQQSSMPPS VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNK FSVGMRFNMS FEGEDSPERR FSGTIIGAVD ISPHWPNSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS AVTGLSQPIS KNKRPRQPTP AHDGADLTKP THWDSGLAQS HDGKQCSNAA EGRKGENNES CHHRETDTIS NSSCVSRTQT DTWLSPTQSN SYKHPVNDMA QDSKTVPSSG WTFLLGTPTS HLVKLSDDQI LDPIESGKKG ETVASCRLFG IDLNHLAAEK ASSQPSSGSS DTDGRISTLS VAQSDPKSDN LEVSIERKSE LSQASLKEIQ CNQSSSANTR SRTKVLMHGM AVGRAVDLTI LEGYDQLIDE LEKMFDVRGQ LCARDKWEIV YTDDEGDMML VGDDPWEEFR NMVRRIFICS KEQVKNMSSG SKQLTSIEVE GDVVTPVSPA V // ID A0A0A0KL64_CUCSA Unreviewed; 408 AA. AC A0A0A0KL64; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN48481.1}; GN ORFNames=Csa_6G489970 {ECO:0000313|EMBL:KGN48481.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN48481.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN48481.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN48481.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN48481.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN48481.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN48481.1; -; Genomic_DNA. DR RefSeq; XP_011657840.1; XM_011659538.1. DR GeneID; 105435899; -. DR KEGG; csv:105435899; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 201 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 316 408 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 201 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 316 408 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 47356 MW; E316BCADC35F6ADC CRC64; MASPPKFFKI LLITNVEDPK LMIPRMFIKS YGKLLSSSVI LKLPDGREWK IGLTTSDNGA VWLEKGWDKF SEHYCLEYGF LLVFKLLNSR GTSSFKVNIF NTTAMETEYS WNVKDFTKEF DSDSDGSESF CPHSKKRNKA SVPRRRLSKK TRKEDHFSIK TEPEEGEECN IFSDIPKEEV EISRRIEELK NRGESNEKLG FKVVMSQSNV GGRFNLVIPK EFAGKYLSDE VGSISIQTEN GKKWSLLYKW SESDDEVAYI SRGWRDFVEE NLLKPGDVVF FELIKKDKFL FTKLQENITV PSSSPKNKTA STTNPFFEVQ IHKKSYGNTV LNIPLGFANK HFSPEMHHAK LQVWNKEWEV KLKQYVNHCR FSAGWSKFYR ENMLRDGETC LFEMVSKRNC IFKVSIFS // ID A0A0A0KND0_CUCSA Unreviewed; 255 AA. AC A0A0A0KND0; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN49236.1}; GN ORFNames=Csa_6G517930 {ECO:0000313|EMBL:KGN49236.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN49236.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN49236.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN49236.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN49236.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN49236.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN49236.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 181 255 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 255 AA; 29005 MW; 7A329D5C6AEABEB8 CRC64; MDDHHNPHQN HHHHHHELPP FPSTAVTAPT TNLHSPPQNP CYLPPTLSQT CLASFSSSAP QSFFSSSHEP QPLAPRFPHS PTLLSYGLDE PNIQSVFPKD DGKKALDAWS TKVARTNRRL ARQRTLTSFT TRSSSSSSCG YHDDYSKGLT ITHFPNTDSS HNNRHLFTFC TPDNKILRML LKKELKNSDV GSLGRIVLPK REAEENLPFL TDKEGLQIVV RDVNSNRRWT MKYKYWANNR SRMYVLENTG FTSTN // ID A0A0A0KNG3_CUCSA Unreviewed; 731 AA. AC A0A0A0KNG3; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_6G518210 {ECO:0000313|EMBL:KGN49266.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN49266.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN49266.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN49266.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN49266.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN49266.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002927; KGN49266.1; -; Genomic_DNA. DR RefSeq; XP_004134681.1; XM_004134633.2. DR GeneID; 101220018; -. DR KEGG; csv:101220018; -. DR KO; K14486; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 731 AA; 80193 MW; 812A4614FF13FD05 CRC64; MGALIDLNTT EEDESHSPAG SSVSSSSASA LTSSPSPSVT SSICLELWHA CAGPLTSLPK KGSLVVYLPQ GHFEQMQEFP PTPYDLPPHI LCRVIDVQLH AEAGSDEVYA QVSLFPENEQ MEHKMQEEMN NDSEEEDVEE GEKTTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YNQQRPSQEL VAKDLLGLKW KFRHIYRGQP RRHLLTTGWS AFVNKKRLVS GDAVLFLRGN DGELRLGIRR AAQLKSGSAF SNICSQQLNS SSIMDVVNAV SSKSSFSVCY NPRAASSQFV LPFHKFLKSI NHSFSVGLRF RLSFETDDGA DRRHTGHITG VSDVDPIRWP GSRWRSLMVR WDDGETNRHG RVSPWEIEPS GSVSLSTNLV PPGLKRTRIG LSSTKLEFPV PNGIGASDFG ESLRFQKVLQ GQEILGYSTP PDGDNNNRCP PEKRRLIPGL HGSGIALMRN GPRNPLINSE TSSRGIVFDE SFQYHKVLQG QEIFPSPYYG RAVATNEVKA NGGCSPADGI RLPRTKDGWP MAMQCENFLT RSSIPSVQVS SPSSVFMFQQ SMVPVQSFNS HNRGNFAEQR IMNKSTSHHS GTTFMTDHSM NTEFIPQGMC PTSLGEQNQL GLSHPSTTTA SAAFTVSKDL SSTCKAGCRL FGFSLTEEKN VGNKDDKGSS ATTPINAGTT TVLSNMGVQC PLKSPLMNKV VGSNCTKGAF QYHLANYNTY Y // ID A0A0A0KNK2_CUCSA Unreviewed; 398 AA. AC A0A0A0KNK2; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN49957.1}; GN ORFNames=Csa_5G146310 {ECO:0000313|EMBL:KGN49957.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN49957.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN49957.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN49957.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN49957.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN49957.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002926; KGN49957.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 398 AA; 44446 MW; E6778D6B76E2A952 CRC64; MNFGVNTLQN HHLQPRNRLD LIMMEPPEAE EEAGGGSNSG NGGRGGGGEV VEREHMFDKV VTPSDVGKLN RLVIPKQHAE RFFPLDSSTN DKGLLLNFED RNGKSWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDIV SFQRGIGEIG RDRLYIDWRR RPELPIHHYP ITTATTAIRP SIVIPSGSGA TAAWGPLVWQ PLGVTTAGYH HQPAAVTPRD HAHLSRNNNN SNNNNNNGNG MCCPYGYGSS SVETTSSGLV YLRTELGGKS SRRVIGTPRL GEDQELELEM DRNYNNYQMQ QEYCSNGGGG ASMVVLQGNY SMENHHHHHK LNSNNNNNYS EEDTPVKKSR LRLFGVNMEM ESPISSPSSD ECDLLLSTNP KTTTSTTQFQ LPSPSIYK // ID A0A0A0KR17_CUCSA Unreviewed; 344 AA. AC A0A0A0KR17; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=DNA-binding protein RAV1 {ECO:0000313|EMBL:KGN52050.1}; GN ORFNames=Csa_5G608380 {ECO:0000313|EMBL:KGN52050.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN52050.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN52050.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN52050.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN52050.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN52050.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002926; KGN52050.1; -; Genomic_DNA. DR RefSeq; XP_004135113.1; XM_004135065.2. DR GeneID; 101203784; -. DR KEGG; csv:101203784; -. DR KO; K09287; -. DR Proteomes; UP000029981; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KGN52050.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 110 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 183 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 110 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 183 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 38215 MW; 0BC20E1F8B2BF750 CRC64; MDGICIDETT STESKSPPPD TSLCRVGSGV TSVVLDSDSS GGGVEAESRK LPSSRYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAQRF RGRDAVTNFK PLTHGGGEED DIVSAFLNSH SKAEIVDMLR KHTYLDELHQ SKRNAGLSGS DRKQNRFLSG SDDDPETARE LLFEKAVTPS DVGKLNRLVI PKQHAEKNFP LQTGSTASSK GLLLNFEDGG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDIVSF LKSTGQDKQL YIEWKARKPS TTTGSAINPV QTFRLFGVDI IKVSPNSGCS EKRRRELEFL TLQCTKKQRV VGAL // ID A0A0A0KR53_CUCSA Unreviewed; 280 AA. AC A0A0A0KR53; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN50882.1}; GN ORFNames=Csa_5G312320 {ECO:0000313|EMBL:KGN50882.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN50882.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN50882.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN50882.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN50882.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN50882.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002926; KGN50882.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 31506 MW; B0EBBCBFA22F943D CRC64; MMPILDQQPL LFPAVDDLSS AVPAFASTPL LRKKRMPRNR RPSSSSSSSS SSNLPTFSFP SSSSSSTPHL PSPRVIDPRK LKFLFQKELK NSDVSSLRRM ILPKKAAETH LPALESKEGM MITMDDLDGV HVWNFKYRFW PNNNSRMYVL ENTGDFVNAH GLHLGDFIMI YQDCEEHNYV IQAKKASEQE VYTDITTNDI VINNDDIVFE DFDASKAASS IYVPSPSMEH PVSSFIYDTS CAFDNDSPFD FMTGSMTNYS RMGALEGFGS VENLSLDDFY // ID A0A0A0KR68_CUCSA Unreviewed; 783 AA. AC A0A0A0KR68; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_5G315370 {ECO:0000313|EMBL:KGN50892.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN50892.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN50892.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN50892.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN50892.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN50892.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002926; KGN50892.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 657 742 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 783 AA; 87589 MW; 7A14C9E2F26EBDC6 CRC64; MKLSTSGFGQ QDHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNK EVDGHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTAQEQKD TFLPMELGIP SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA KDLHDIEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LTKYVKAVFH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GVSSVHDNRE DASNGLMWLR GGVGEQGLHS LNLQSVSSLP WLQQRLDSSM FGNDHNQQYQ AMLAAGMPNL GGVDMLRQQI MHLQQPFQYI PQAGFHNSLL QMQQQQQQQQ QQQLVQHSMP QNILQAPSQV MAENLPQHIL QQTLQNQPED LPNQQQHTYH DTIQVQSNQF HQGGHSNVPS PTFPRTDLMD SNTSYSESIT SRRNILASSC AEGTGNLSTI YRSGQSILTE HLPQQSPVSK NAHSQVDAHP NSMSFPPFSG RDSILELRNC NSDSPSPTLF GVYKTGSVGR SLDISRFSSY QELREELAQM FGIEGQLVED PRRSGWQLVF VDRENDVLLL GDDPWEAFVN NVGFIKILSP EDFQKLGEQA IESFNPIVGQ RLTSGGNEAG NVSGLPSVGS LEY // ID A0A0A0KWD7_CUCSA Unreviewed; 312 AA. AC A0A0A0KWD7; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN53194.1}; GN ORFNames=Csa_4G025730 {ECO:0000313|EMBL:KGN53194.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN53194.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN53194.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN53194.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN53194.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN53194.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002925; KGN53194.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 36411 MW; 9458513C1077D15B CRC64; MFININLFFA LQKMPSKFIR MFGKELSSSV VLIVPNGGVW EVGLEKFNGQ IWFNHSWNKF IDYYSIDYGF LLIFKYEGNS SFHVLIFDTT TFEIQYPHHD GMKLENAVEK SDYAISISSS HDCSDQFIDD NDDDNECRYE LHTTKRSKIK LESCDHEFMS KRFKVEDCIA VEDIDVVKNH RRRKLASKTR SSRGQEMAIC EAKKKMMKTN NPSFMLIIEE RNIKKNYAYI PSSFGKKYLS REDEIIEIQG RSSEQGRWKI WCKGVSAKRM GVGWGVFRKE SNLRVGDVVV FELVKMNKNR VMKFTVFSSG SI // ID A0A0A0KX41_CUCSA Unreviewed; 696 AA. AC A0A0A0KX41; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_4G052740 {ECO:0000313|EMBL:KGN53424.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN53424.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN53424.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN53424.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN53424.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN53424.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002925; KGN53424.1; -; Genomic_DNA. DR RefSeq; XP_011653224.1; XM_011654922.1. DR GeneID; 101213942; -. DR KEGG; csv:101213942; -. DR KO; K14486; -. DR Proteomes; UP000029981; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 77936 MW; 28D0930117D567B0 CRC64; MANRGGGSLL PSSSTSIQGW CGDELYTELW KVSAGPLVEI PRINEKVLYF PQGHMEQLEA STNQELNQKL PLFNLPPKIL CQVVDTRLLA EQDSDEVYAQ ITLMPEANQA LPSTFEPPLI ECRKTKVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MTQQTPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR LARQQSSMPS SVISSHSMHL GVLATASHAV STQTRFVVYY KPRASQFIVS LSKYMEAMNN KFMVGMRFKM RFEGEESPER RFSGTIVGVD DMSPHWPNSE WRSLRVQWDE LASIQRPDRV SPWEIEPFVA PTPSIPHSIS VKNKRPRPPL EIPDSDNSTV TTLRHPGSTS HDDRTQLSVS AAELKRFENH ATWHYKQTDA GGNGNSVSRT AMEGSWLASS SGCVSQHRLQ DLIDDRKSGS VWSTVFPGQL AAHSTCPTPR SSNTKSDQVQ DLGEKGKKAE ASPSCRLFGI ELINHSKSPV LTERAADQPN STPNEITEAE QNSNLPKISK ERKLGLLQVP PKEIQHKQNS STSSRSRTKV QMQGMAVGRA VDLTTLEGYG QLIDELEKMF DIKGELRPRN KWEIVFTDDE GDMMLMGDYP WQEFCNMVRR IYIWSSQDVK MGSVSKLAMS ALECEGTVIT SESADS // ID A0A0A0KZM6_CUCSA Unreviewed; 409 AA. AC A0A0A0KZM6; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN53336.1}; GN ORFNames=Csa_4G047970 {ECO:0000313|EMBL:KGN53336.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN53336.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN53336.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN53336.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN53336.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN53336.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002925; KGN53336.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 46966 MW; E5832713F104A8EE CRC64; MDDFASSSSR FHHHDYYNNS NNTRIRDFDD EQQQQQQQQQ DQEMEEESCN NSNNNNCSIF VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED RCGKLWRFRY SYWTSSQSYV MTKGWSRFVK DKRLDAGDIV SFQRPLHRNQ DRFFIDWRRR PPHPAVDMPF HFHRHDGGTG AAQFPPPPPH HHHFQLHSQW NNNPVATPLS LQRDHVLHLP QYNNNVSLFH NTYNHHHHHN RYLDGSYGGA SVFYHLRSPI APPQVESVPV VADGNGGNGG GGSGIGRTSA AKTTLRLFGV DMECEVSDDE CDVATTSKAM SSSSQFHVYN GMPMPMLTPM TMQMPTSNNN ISTMDFFEKG KSSMSSMSSF DFGYFWIKLQ EQEFIEHVVI AASNSLDKL // ID A0A0A0L3V3_CUCSA Unreviewed; 147 AA. AC A0A0A0L3V3; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN56625.1}; GN ORFNames=Csa_3G126890 {ECO:0000313|EMBL:KGN56625.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN56625.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN56625.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN56625.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN56625.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN56625.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN56625.1; -; Genomic_DNA. DR RefSeq; XP_011650806.1; XM_011652504.1. DR GeneID; 105434822; -. DR KEGG; csv:105434822; -. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 147 AA; 16545 MW; 8C4D1CDBD171D172 CRC64; MQSARKPPTE LPTMEPQNGE TMPLSGKPYH AFILSKSHVA PIYNLVLPAK FHSILPAIVI PAVLLCRGKK WKIDYHGNRR GKALDSKQWR KFVNDNCLKS GDAIVFELLE CSSSILKFRV QILSGDIPLE LHDKFSGETK ETPIHLD // ID A0A0A0L6H6_CUCSA Unreviewed; 482 AA. AC A0A0A0L6H6; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN57545.1}; GN ORFNames=Csa_3G207940 {ECO:0000313|EMBL:KGN57545.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN57545.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN57545.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN57545.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN57545.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN57545.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN57545.1; -; Genomic_DNA. DR RefSeq; XP_011651246.1; XM_011652944.1. DR GeneID; 101217033; -. DR KEGG; csv:101217033; -. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 97 188 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 97 188 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 482 AA; 55058 MW; 91724B993135097D CRC64; MPILHKHTEI TDLPSSEMNQ WRPGKKEKLF RRKTWVSSTQ PTTSYDQDAV HSFSQPRRVK PKRTTVDSLY HDLEAQSVVM ARAKEVQAKL SPRNPSLIKV MLPSHVTGGF WLGLPKGFCD IHLPKQDTAM VLEDENGKLY ETKYLSDKTG LSAGWRGFSI AHKLLQGDVI VFHLVMPNKF MVYIVRSNSA AKVDGALGLK YEASYKQTPI YSKENIPHIK EEQITVEDEN AEETNVVPVK EETEEDHNPV SHPMDIHEER EQTNSHKLLD TEMMPVLEES ENERRSSDSN SMNGIHLSDS RLSFDKVNSL DDFIISVNGL IIDSGFSNHI RAKYYELCCS QKSFLHDHIL EGLNYKLVSG IISETINIAD AIKASKVTIS QEHLVTWDKT LTAFEGLGMN VGFLRVRINQ LLTLSQKPEK KREAEMMRDS KQEELHILLT KIMEGRTTLR QLEAKICSLE TDIKHMDKLF KEVASAPWYL ER // ID A0A0A0L7L0_CUCSA Unreviewed; 225 AA. AC A0A0A0L7L0; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN56101.1}; GN ORFNames=Csa_3G073910 {ECO:0000313|EMBL:KGN56101.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN56101.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN56101.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN56101.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN56101.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN56101.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN56101.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 25602 MW; 4F70DD1B77086071 CRC64; MVDVHYTYNN KIVAEDVYKA SLILYDMALS KSVEPFEEPI DRFNNQLSST STSLVNEQSP VVNEHAPVVN EVLPNNDDDN GNNENVAAAV VVGRDQGRFP PMAVIQNIIG ECSPPFVKQL TKTDVTDNQG RLALHKEFVN LNLDPMFNDD EDLEDGISVI VYDIEGREYD MIFKLWASKL YVLTKSWKEF YKTNDLTQPG EFISVWMFRH VVTQKLCFAI MRGQA // ID A0A0A0LBH2_CUCSA Unreviewed; 296 AA. AC A0A0A0LBH2; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN59163.1}; GN ORFNames=Csa_3G778200 {ECO:0000313|EMBL:KGN59163.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN59163.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN59163.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN59163.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN59163.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN59163.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN59163.1; -; Genomic_DNA. DR RefSeq; XP_004136699.1; XM_004136651.2. DR GeneID; 101214938; -. DR KEGG; csv:101214938; -. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 296 AA; 32505 MW; F46CC40607FBD338 CRC64; MSINNFSPDF HQPPLFSTSQ LPIMLNSKSS LSVAPADHLP MFEKPLTPSD VGKLNRLVIP KQYAEKYFPL SPSAAVATAA AAAAAGDSAD KGLLLSFEDE SGKIWRFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDVVV FERHRRDGDR LFIGWKKRSA PSPTDSAVAT GSGGVGGGGG WTRMFCSANS YPNSHRHLPS PPYQSSSDTP HAESSVQSQT VSIGNSKILR LFGVDLECQT DMSEPEPPSL LNIGSSLTLS GRDPTRHTFY PHYSSPLPHH MDFTFSQDVN QTKYQG // ID A0A0A0LC65_CUCSA Unreviewed; 127 AA. AC A0A0A0LC65; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN58297.1}; GN ORFNames=Csa_3G609250 {ECO:0000313|EMBL:KGN58297.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN58297.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN58297.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN58297.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN58297.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN58297.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN58297.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 127 AA; 14933 MW; C65E5DA7DB02D721 CRC64; MAVIQNIIGE CSPPFVKQLM KTDVTESQGR LALHKEFVTR NLIPMFNRGE NLKNGISVTV YDSEGREYDM IFKFWTSKLY VLTKSWNKFY KSNNLTRPGE FISVWMFRHV VNRKLCFAIM RGDAEQR // ID A0A0A0LCL4_CUCSA Unreviewed; 895 AA. AC A0A0A0LCL4; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN58689.1}; GN ORFNames=Csa_3G728060 {ECO:0000313|EMBL:KGN58689.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN58689.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN58689.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN58689.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN58689.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN58689.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN58689.1; -; Genomic_DNA. DR RefSeq; XP_011651831.1; XM_011653529.1. DR GeneID; 101213503; -. DR KEGG; csv:101213503; -. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 316 417 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 630 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 316 417 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 895 AA; 98977 MW; 2E6076BAE02CDC07 CRC64; MALRTCMNVS CRASSSTEWR KGWALRSGDF ATLCDKCGSA YDQSIFCDIF HLKDSGWREC TSCGKHLHCG CIASKFLMEL HDSGGVNCIS CAKSLGLHTT STSEKLNGLG TSQVQNSGDL QSFLVEDGNN DRITLIQSGN KAEGNELRQS HLSPSNNKNV SLVQMKHEEN CPSVRDVGYV CSSESTQVTN GLNEFAKQEI CKGDSGTKLA YDSLALGCGN SNPLPGVSID EKEASKPSSP LLLGSRSRHL IPKPARSVFN VGLESNTSMV SQVRVARPPA EGRGRNQLLP RYWPKITDQE LQQISGASNS TVVPLFEKML SASDAGRIGR LVVPKACAEA YFPPISQPEG LPIRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKASSSS IMQDSHPSAL STSGHSSEFF SSVFENLPLL SGHSSLLQSL KGNMDPQLNL LPGYFNQPGN DTNWQKAEKQ DDQSRECLLL SSMMVPERKR TRNIGSKSKR LHIDCQEALE LRLTWEEVQD LLCPPPTVKP SKFMVEDHEF EEYEEPPVFG KMSIFVVHST RGQEQWAQCD DCSKWRRLPI DVLLPSKWTC LENIWDQSRS SCSTLEELTT RELENILRLN KEFKRQRTLA FSGPIQDHES SGLDALANAA TLGDNGSDPG TASVATTTKH PRHRPGCSCI VCIQPPSGKG KHKPTCMCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQKN QLKWSSREES ELDNTSRHAS LNLDPSANEA QLMTNEPRSQ SNLVETCKDQ LDLNCQPDQE NEVEGVPNRV SMMSLVQIAS LPLETYLKQN GLTSLLPELQ ASSASHAPAQ GTNEMEGAVN DDGCFASAAQ DQESEGEQIC GKDQS // ID A0A0A0LE69_CUCSA Unreviewed; 948 AA. AC A0A0A0LE69; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_3G866510 {ECO:0000313|EMBL:KGN60018.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN60018.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN60018.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN60018.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN60018.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN60018.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN60018.1; -; Genomic_DNA. DR RefSeq; XP_011652441.1; XM_011654139.1. DR GeneID; 101216825; -. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 834 918 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 948 AA; 104476 MW; CE744580965EEA6B CRC64; MGSVEEKLKT SGGLINNAPQ TNLLDEMKLL KEMQDQSGAR KAINSELWHA CAGPLVSLPH VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQNVTLHAD KDSDEIYAQM SLQPVNSEKD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY TMQPPTQELI VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLGETDWGS LVKRPMLRVP ENIRGDLSYA PTLCSEPLMK MLLRPQMVNL NGTTLQQDST NNLVKIQDMK DMQNPKMQQL IPTETASPGN QNQHHPGPAQ SDPINPNSSP KANVPGKVQT SVAIESEAPT AADGDKAKYD RDLSASTNQS NPLPPVGGCA EEKLTSNEMN MQTLVNQLSF VNQNQIPMQL QSVSWPMQPQ LESLIQHPQP IDMPQPEYTN SNGLISSLDG DGCLINPSCL PLPGVMRSPG NLSMLGLQDS STVFPEVLNF PLPSTGQDMW DPLNNIRFSS QTNHLISFSH ADASNLNCMA NANIMRDVSD ESNNQSGIYS CSNLEMSNGG STLVDHAVSS TILDDYCTLK DADFPHPSDC LAGNFSSSQD VQSQITSASL GDSQAFSRQE FHDNSAGTSS CNVDFDEGSL LQNGSWKQVV PPLRTYTKVQ KAGSVGRSID VTSFKNYDEL CSAIECMFGL EGLLNDPRGS GWKLVYVDYE NDVLLIGDDP WEEFVSCVRC IRILSPSEVQ QMSEEGMKLL NSAMMQGINC PMSEGGRS // ID A0A0A0LGE7_CUCSA Unreviewed; 575 AA. AC A0A0A0LGE7; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN59902.1}; GN ORFNames=Csa_3G852510 {ECO:0000313|EMBL:KGN59902.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN59902.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN59902.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN59902.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN59902.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN59902.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002924; KGN59902.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 219 315 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 451 547 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 219 315 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 451 547 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 575 AA; 64868 MW; 9F164168F3A7D998 CRC64; MSETESRREM VAARRPSFYT FYSSTLSSER LKLPLKFVKH LEEIIGRSVV LIGPSGQTWH VNLIQENDNL FFCDGWPTFA RDHALECGDF LVFRYDSELN FNVQVFDQSA CEKEGAFLSQ FRQDNTGHKR DREEDHSSQE TREQDVTKKT RSISDVNLDC IRENLPSIRT VEDHKSVAGQ NGISKVDDIT TRDKIPALPL SFQDEKKVSQ TFSSNFPYFV RIMKSFNVRG SYTLNIPYKF SMAHLPSCKL KLVLHNLKGE SWTVNSVPTT RVHTSHTLCG GWMAFVRGND INMGDICVFE LVRDCELCVH IFRVGKEMSE DQSGNGSFNR LGTGHAVIPR KALKGLPKKM NGNSHKVHSK RSKRIEIPDK KCLKSWQESF CNDTKKHSSA KKVSTKVMVC SPSKKPSKRL VNQRTSVKGD LILPARPGLR AMLARDEERA AKSFVSCFPS FVRIMKKFNT SGSYTLKIPH QFSSAHFPNI RTEIVLRGPN GGCWTVNSVP DSMGRMMHTF CGGWMSFVRD NGIQMGDICI FELVGKCELY VHVTGVGKKG FELSSEATTC SELASVPTTS NHPSQ // ID A0A0A0LGX6_CUCSA Unreviewed; 1107 AA. AC A0A0A0LGX6; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_2G068680 {ECO:0000313|EMBL:KGN61195.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN61195.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN61195.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN61195.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN61195.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN61195.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN61195.1; -; Genomic_DNA. DR RefSeq; XP_011648969.1; XM_011650667.1. DR GeneID; 101205542; -. DR KEGG; csv:101205542; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 995 1080 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1107 AA; 121882 MW; 905EC5B5310F789F CRC64; MKTPANGAAG AAAAPNSNEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV AASLRKDVDG QVPNYPSLAS KLLCLLHNVT LHADPETDEV YAQMTLLPVP SFDKDALLRS DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVAKDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSV WEIEPVIAPF FICPPPFLRS KRPRQPGMPD DDSSDLDGIF KRTMFGDDFC MKDPQGYPGL NLVQWMNMQN PSLSNSMQQN YMHSFSGSML PNLGSVDISR QLGLSNAQLP QSNNIQFNAQ RLLSQAQQLD QLPKLPTSMN SLGSVVQPPQ QLDDMSQQTR QNLINQNAVS SQIQAQIMQQ PHTNGILQQQ TALQNQQLQR NAPQNLQMQQ HQQILSQNQQ QNMNPSPHLE QLNHQLQMSD NQVHIQMLQK FQQQPQSLLA QQSALQPSQL VQLPDQQRQS VDASQSFSRS MSSNQMLDIP QSTPAAGPPS NALPQQAANC NGQTNNRFSN QHLQPKLPQL QQPASSTVLS DMSRPMGLPP AQINNQLSAA TSSLITGVAG AGQSGITDDI PSCSTSPSTN NCSSLVQPVA NGRVHRTTGL VEDVAQSTAT IFSSNTLDNM SPNANLVHKD LPQKTAVKPS LNISKNQSHG IFAQQTFLSG VVAQTDFLDT SSSTTSACLS QNDAQLQQNN MMSFNSQPML FKDNSQDLEV PTDLHNIPYG NHVDGQMVAQ LSSDPLLDKG IGGLGKDFSN NFSSGAMLTT YDAQKDPQQE ISSSIVSQSF GIPDMTFNSM DSTINDNTFL NRNQWAPPPP FQRMRTYTKV YKRGAVGRSI DIARYSGYDE LKQDLARRFG IEGQLEDRQK IGWKLVYVDH ENDVLLVGDD PWDDFVNCVR SIKILSPQEV QQMSLDGDIG NGVLPNQACS SSDGGNA // ID A0A0A0LHN1_CUCSA Unreviewed; 1097 AA. AC A0A0A0LHN1; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_2G000030 {ECO:0000313|EMBL:KGN60494.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN60494.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN60494.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN60494.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN60494.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN60494.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN60494.1; -; Genomic_DNA. DR RefSeq; XP_011648570.1; XM_011650268.1. DR RefSeq; XP_011648571.1; XM_011650269.1. DR GeneID; 101210917; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 970 1063 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1097 AA; 121793 MW; 2DE46D0AB6C87CA0 CRC64; MKAPSNGFLA NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE TDFIPNYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYEKEALL ASDIGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP FYICPPPFFR PKFPKQQGMP DDESDIENAF KRAMPWFGDD FGMKDTPSSI FPGLSLVQWM SMQHNNQFPA AQSGILPSMV APSALHGTLT NDDPSKLLSF QAPVLSSPNL QFSKANQQNQ VGQFPPTTWS QQQQLQQLLQ VSASQQLQQQ QLPPQEQQQQ LPQQQQLQSQ QSQRQQQTSQ SVLLNNSVTA ANHLPNPSMQ QPLVYSQLQQ QQLLASNIQS HQTSQPSNKN SFQTTSLSEE TQLQPQIEQQ SSLLPRQQQP TQFQQAPLQL LQQSLSQKAQ QHPQVQQFSQ PIPTEQQLQL QLLQKLQQQH QQQPLFSPAS PLLPPQLLQQ QHIHPQNQQL PPLPLPNQQQ FNTSGGSLQT EKLNSNGFAS LGLMQSQQVP ITQSHSQFKP TTAIRAYSGL TEGDAPSCST SPSTNNCPVP VSNLLNKNQQ GAATLGGDSV VEPATNLAQE LHSKPDLRIK HEFPNSKGLD QLKYKGTVPD QLEGSSSGTS YCLDAGTIQQ ALPLPTCLDN DVQSHPRNNI PFSNSIDGLT PDTLLSRGYD SQKDLQNLLS NYGGGVPRDI ETELSTAAIS SQSFGVPNLP FKPGCSNDVN INEAGALSSG LWANHSQRMR TYTKVQKRGS VGRCIDVTRY KGYDELRHDL ARMFGIEGQL EDPQRTDWKL VYVDHENDIL LVGDDPWDEF VSCVQSIKIL SSAEVQQMSL DGNLGHIQAP NQACSGTDSG NAWRGQYDDN SAASFNR // ID A0A0A0LIK1_CUCSA Unreviewed; 412 AA. AC A0A0A0LIK1; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN61750.1}; GN ORFNames=Csa_2G237690 {ECO:0000313|EMBL:KGN61750.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN61750.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN61750.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN61750.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN61750.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN61750.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN61750.1; -; Genomic_DNA. DR RefSeq; XP_004145349.2; XM_004145301.2. DR GeneID; 101213446; -. DR KEGG; csv:101213446; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 381 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 381 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 47327 MW; FAE68FD852695F8E CRC64; MTDFSAFRTG GFKRKMPRPH FHKLVLTSTI QARKLRIPET FVRMIRDELS AVATLTVPDG HVWRVGLRKA DNKFWFEDGW QGFLEHYSIR VGYLLVFRYE GNSSFCVFIF NLNTSEINYQ SAALSNNQRN NYSIQNRIFE EMEDYDIPEA IPSNQSMNSG SLRNKLFGDE WNLHQSKSAS TLQAEYLSTR DIGVQFSAVE VKKSADEVRF QNLGDDAAHR VKKSGSKKRK IESSEHHPSA HNSEDLGDIR FRFYESASAR KRTVTAEERE RAINSAKAFE PGNPFCRVVL RPSYLYRGCI MYLPSCFAEK NLSGVSGFIK LQTPDGRQWP VRCLYKVGRA KLSQGWYEFC LENNLGEGDV CVFELLRMRE IVLKVTMFRV IEEGGRMANP NPASMMNPPP LRSVSHIKLI RN // ID A0A0A0LJV0_CUCSA Unreviewed; 267 AA. AC A0A0A0LJV0; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN62043.1}; GN ORFNames=Csa_2G292240 {ECO:0000313|EMBL:KGN62043.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62043.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62043.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62043.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62043.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62043.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62043.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 165 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 165 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 31004 MW; 5D7384ABCE43C40D CRC64; MHEIPRKFVR EYGLKALLKD QICLKVRDGK EWNVGLTKSN NGTRVWLHYG WEKLVGFYSV KSGYFLVFKY ENPSPSFYVV IFDHTATEIE YPVKKTRLDK AKEKVKMETY FDDDCLDLDF KDGDLSSGVK KPTNSRWRPP STGSQQARAM AEANRFQSMT LNPSFICKIW PSHIHRTKSL SIPKNFADMN LEDSITKIIL KASDGRMWSG ECGFYWTPKM QRMTFYKYGW KSFIRDNNLA VGDFCVFEMT GKNSTTVAFK VESFRAS // ID A0A0A0LJV3_CUCSA Unreviewed; 550 AA. AC A0A0A0LJV3; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_2G315390 {ECO:0000313|EMBL:KGN62180.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62180.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62180.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62180.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62180.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62180.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62180.1; -; Genomic_DNA. DR RefSeq; XP_004150940.1; XM_004150892.2. DR GeneID; 101216118; -. DR KEGG; csv:101216118; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 550 AA; 60285 MW; DA3B55F226573FBB CRC64; MMDPNLWRAF SGNSAHIHTV GSEVYYFVQG HLEQATYVPT LSRSVLSNPI TKCIVSAADY TADPLSDEVC LKLNLNPIPP GQSVSQVVHP FSSCDDGNGQ RNRIEKFAKV LTSSDANNGG GFSVPRFCAD SIFPPLNYQV EPPVQTLAIT DVHGVVWNFR HIYRGTPRRH LLTTGWSKFV NNKKLIAGDA VIFARDSSRD IFVGIRRSSK SSGGGDCSKW NSQVGGGGRC NVEEKRSGDR STDVFTRTNI GKVPAETVAT AAELAAEFKP FEVVYYPRIG TSEFVIPAEK VNNSLNYQWY PGIRVKMPVE TEDSLKTQWY QGTVTSASVP IQGPWKGSPW RMLEVTWEET DALQSAKFVS PWEVELASPS PPIPPPLHSA KKYRIPQKSG MVNAEADLFS PMMRFGDSTM GQFNRSLMNF NSFPAGMQGA RQIFFRESGS SNPHNEISPP TSDENSMLKL NTAPNTQTVS TDLHIGSVQS DTLSPDSQAS VLSFATGTAE NQSCNSTKAG VNSFQLFGQI IYTSPPAENE LDNGADSDDG DKKRKRSIDL // ID A0A0A0LKX3_CUCSA Unreviewed; 209 AA. AC A0A0A0LKX3; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN62530.1}; GN ORFNames=Csa_2G359985 {ECO:0000313|EMBL:KGN62530.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62530.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62530.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62530.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62530.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62530.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62530.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 209 AA; 23453 MW; F32FF17399B4A8D9 CRC64; MGISNLSYEE CRQKRVEENK KRMEALNLPL LSQALLDSSP SKSSPKQLVV VRRSSRVAKQ PTPVYAEVLV DRVAIPRRIS RARDFSAQFY ASDEARKKAF ERALELQSGL EPNYPSCIKS MVRSHVSGCF WLGLPSHFCK THLPKNDGVM TLIDEDGDEY PIIYLARKTG FSGGWKGFSI AHKLSDGDAV VFQHIKPTAC KVIALHLFT // ID A0A0A0LLY8_CUCSA Unreviewed; 501 AA. AC A0A0A0LLY8; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN62009.1}; GN ORFNames=Csa_2G285930 {ECO:0000313|EMBL:KGN62009.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62009.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62009.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62009.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62009.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62009.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62009.1; -; Genomic_DNA. DR RefSeq; XP_004148056.1; XM_004148008.2. DR GeneID; 101211030; -. DR KEGG; csv:101211030; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 501 AA; 55776 MW; 8159FBD6DA5F3A44 CRC64; MLNGDGLLIS VNPNGASSQG RNVIVLKSSA AATVADDDGD MTVSQLARSP RHRLASSSGK ARKQMDDNPM VQKVKKRLAD WKTSHAVTGP GGKFMSFEQN KAAFDEQCSP GEFKSSAVMR ALEVRSNLEQ EFPSFVQSLV RSHVASLFLM GLPGAFCKSY LPARDSTMTL EDEAGRHFQV KYIAHKTGLS AGWRQFSAAH KLLEGDVLVF QLVGPTKFKV YVTRASDLTE VDGALGLLNL ESRTRHSDAG KDTDYKGDMA SDILNKRRVK SALLDTAEKQ KKRSPMMSIS RNQVAEQYVN TSEEVVSAIV EAYDVYPAVP FKHIKSFDDF NIVIDGLSIN SELPRDLRKR YYKLCCSQNM FLHENLIQGM NRKLVTGVIS ETITIANAIK ASDLSTSRDE YSAWDKTLRA FQLFGMNVGF LRTRLHRLAN LAYESENALD LRTLVDAKND QVHVHDEIRN IETKLVELKE ACDRFGAAID GLDSKAEIYK SKFQEEVSAP W // ID A0A0A0LM04_CUCSA Unreviewed; 355 AA. AC A0A0A0LM04; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN62034.1}; GN ORFNames=Csa_2G287160 {ECO:0000313|EMBL:KGN62034.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62034.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62034.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62034.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62034.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62034.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62034.1; -; Genomic_DNA. DR RefSeq; XP_004148065.1; XM_004148017.2. DR GeneID; 101213215; -. DR KEGG; csv:101213215; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 254 353 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 254 353 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 41734 MW; 6E9484E04F235314 CRC64; MGLFTSPNPH FFKIVLHQNL TQQKLDLPNK FVKNNAHSLL FNNATLSLPD GSKWNFQLTR LDGKICFLRG WPEFVNFYAV QPGYFLVFQL KGICCFNVLI FDTSATEIDY PMRRLPVIVP KSESDDEGES IQILHEEVLK KRRRMEKKEK ETSAYYSLRE MKKNMKIKIM KRREFTTPQG FSDDDEDEDL ETDYSPRQTN YRASEYNERE DGRSSPESMR PMNPRKTQQV LTENQLVVVR RASSFKCRTK NPSFMVTMRP SYIQTGNCLS LPRIFSERYI KESVDVKLEV GDGRIWKVWC GVRWAFTRRR TELKGGWKRF AVDNELEEGD ICVFELMNKT PKVHFLVTIF RLPSP // ID A0A0A0LMR6_CUCSA Unreviewed; 354 AA. AC A0A0A0LMR6; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN62042.1}; GN ORFNames=Csa_2G292230 {ECO:0000313|EMBL:KGN62042.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62042.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62042.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62042.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62042.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62042.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62042.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 252 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 41331 MW; A4C9854DF5322D28 CRC64; MANLFRSPNP HFFKVILHQT LTQQKLDLPN KFVKNNGGSL LFNKVTLFLP DGANWKIQLK KLDGKICFRR GWPEFVQFYS VQPGHFLVFQ LKGICCFNVL IFDTSATEID YPIRRLLDLI PKSRNEDEEE SIQILNEMVL KKRRMEKEEE TPPAYRSLRG LKKMMRKNAK VKIAKNRGIT SDEDEGDLEM DNSRRQSNHR GIVYNEGDDG RVSPESMRPM NPRKTPPALT ENQLAVKKRA SWFKSRRNNP SFMVTMRPSY IQTGNYLSLP RRFGEKYIKE SVDVKLEVGD GRCWRVWCGV RWAFTRRRTE LKGGWKRFAV DNELKEGDIC VFELMKKNGS VLFKVAIFRL PDAE // ID A0A0A0LNH0_CUCSA Unreviewed; 229 AA. AC A0A0A0LNH0; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN62529.1}; GN ORFNames=Csa_2G359980 {ECO:0000313|EMBL:KGN62529.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62529.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62529.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62529.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62529.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62529.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62529.1; -; Genomic_DNA. DR RefSeq; XP_004152735.1; XM_004152687.1. DR GeneID; 101205473; -. DR KEGG; csv:101205473; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 229 AA; 25726 MW; 3F115F0C7882B7C7 CRC64; MGIANLSYEE CRRKRLEENK KRMEALNLPM LSQALIDSSP SKSSPSKLTK PRVTQKELVV VRRSSRVAKQ TAPVYAEVII NRVVIPRRIS KARDLSNRVY ASDEARKEAF ERAEQLQSGL EPNYPSFIKS MLQSHVSGGF WLGLPSHFCK NRLPNRDGVM TLIDEDGDEY PTIYLARKTG LSGGWKGFAV AHKLADGDAV IFQFIKPTTC KVHILRTNSS REDSDSNSS // ID A0A0A0LP18_CUCSA Unreviewed; 417 AA. AC A0A0A0LP18; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN61751.1}; GN ORFNames=Csa_2G237700 {ECO:0000313|EMBL:KGN61751.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN61751.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN61751.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN61751.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN61751.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN61751.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN61751.1; -; Genomic_DNA. DR RefSeq; XP_004145348.1; XM_004145300.1. DR GeneID; 101213202; -. DR KEGG; csv:101213202; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 316 411 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 316 411 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 417 AA; 47945 MW; 9AEBC1ED3956654F CRC64; MDNSLTAMPE SNEQEGAQSF NQTSPARRAG LFYKLVVPSI LQDKKLKIPN KFAKKFGGDI LDLVTLVAPN GYRWVLELKR HGRSMWFEDG WHEFVKHHCI QVGQLLVFRF EGNSVFNFYM FNLTAIPNGP CNTSNASIEQ NDGEQCPDTL GKEAEYKKLV EILGTGSPDP SPRPSVKDLV CEFPDQQKFN GSCNGTSIKN FMHWFDTENL HPLKDFDNPL KHLDKLRMQL LNSNRDIGIQ FDGDELAKAR ENHDFQLNQS SDEREEGAMK KKLKLEPIDY YNDNEPIDEK KCGNVPHKIN RMAFGVEEFK FGNPFCWIVM RQSYIRRGFH LHIPSKFAEK YLKGVWGDIT LQVSSGKQWR VRCIREGPGT KLTRGWADFV VDNDLKEEDV CVFELINMKD IVMQVTVFRV HGDPTKT // ID A0A0A0LR27_CUCSA Unreviewed; 839 AA. AC A0A0A0LR27; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_1G000580 {ECO:0000313|EMBL:KGN63434.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN63434.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN63434.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN63434.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN63434.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN63434.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002922; KGN63434.1; -; Genomic_DNA. DR RefSeq; XP_004138020.1; XM_004137972.2. DR GeneID; 101206845; -. DR KEGG; csv:101206845; -. DR Proteomes; UP000029981; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 714 798 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 839 AA; 93230 MW; 150ECAAD351F361C CRC64; MASSEVSINP NSASFNDHAD STKDTSDPPN ALSPRDADIA LYTELWNACA GPLVSVPREN ERVFYFPQGH IEQVEASTSQ VADQQMPVYN LPSKILCRVI NVHLKAEPDT DEVFAQITLL PEANQDEHAV DKEPPPPPPR RFHVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHGNEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QHGNVPSSVI SSHSMHLGVL ATAWHAISTG TLFTVYYKPR TSPSEFIVPY DQYMESIKKS YTIGMRFKMR FEGEEAPEQR FTGTIIGCED ADPKRWKDSK WRCLKVRWDE TSTISRPEKV SPWKIEPALA PPALNPLPMT RPKRPRSNMV STSPDSSVLT REGSSRVTVD PSPASAFTRV LQGQEFSTLR GNFIDGSDPD AAEKSVMWPP SLDDEKVDVV STSKKHGADS WIPPGRSEPT YADLLSGFGT DMDSSHGVRA AMGDSALVTA NSIRKHAMEH DGKFSFLGGS SWSVLPSGLS LNLVDSSQKG HIRAGDLSYQ VRGNATFNGF GDHSISHCHR TEQPHGNWLM PPPSSHFDYP IHSSELMSKP MLFQNQDILK PKDGNCKLFG ISLVKNPAIP DPVGLNRNMM NEADVMHPNV HQIHSSESGL KSELPRVLKL DKSVAISEAD KLQQTCKSQG TSARSCTKVH KQGIALGRSV DLSRFNNYDE LVAELDQLFE FGGELQAPKK NWLIVYTDDE GDMMLVGDDP WREFCGMVRK IFIYTREEVQ KMNPGSLNLK GDENPSVEGE EVKETKSQAV PSMSAPESS // ID A0A0A0LRE7_CUCSA Unreviewed; 395 AA. AC A0A0A0LRE7; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN62556.1}; GN ORFNames=Csa_2G360730 {ECO:0000313|EMBL:KGN62556.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN62556.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN62556.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN62556.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN62556.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN62556.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002923; KGN62556.1; -; Genomic_DNA. DR RefSeq; XP_004152721.1; XM_004152673.2. DR GeneID; 101222600; -. DR KEGG; csv:101222600; -. DR Proteomes; UP000029981; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 274 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 274 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 395 AA; 44847 MW; 3598990EDF163E88 CRC64; MDKVGDSSNK WAEDIYWSHF QFTHFYQILA GGCEQQLVIP NKFSNNLRNK LPDTVTLKGP SGATWDVGLT SSDDKLYFKR GWQEFVKAHS LEQNDLLVFR YNGMSQFDVL IFDWKSFCEK EASYFVKICE NKKIDSGGQA KRKFREPSLD GFDANINNGA ECDSSENIIH DDSMERMIQD VVSKATNFNG QPEVFSAEPI RTVQTRRKKK TPNKTAIIST PDPVQLSDSD VEATPIKKIG SYVEQYVSHR RAITEGEKNN ALKLAEAASS DTGFKVVMRP SHVYRRFFLF IPTQWVTKNL SLRNQDIILR VGSDEWPTKF NFTPSRQCGG LTSGWKHFSV DNNLEEFDVC VFEPVNKSSG PVVLEVKIFR VVEDVIPLTR VASKGNRKPT KAPEA // ID A0A0A0LTJ1_CUCSA Unreviewed; 339 AA. AC A0A0A0LTJ1; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=DNA-binding protein RAV1 {ECO:0000313|EMBL:KGN65245.1}; GN ORFNames=Csa_1G269870 {ECO:0000313|EMBL:KGN65245.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN65245.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN65245.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN65245.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN65245.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN65245.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002922; KGN65245.1; -; Genomic_DNA. DR RefSeq; XP_004146691.1; XM_004146643.2. DR RefSeq; XP_011655965.1; XM_011657663.1. DR RefSeq; XP_011655970.1; XM_011657668.1. DR GeneID; 101212246; -. DR KEGG; csv:101212246; -. DR KO; K09287; -. DR Proteomes; UP000029981; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:KGN65245.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 100 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 167 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 100 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 167 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38832 MW; 7444B2D03B273A04 CRC64; MKQEFSSMIS KAKTNAVGET LDSSCITCPL PINGCSRQGR SLTSKFKGVV PQQNGHWGAQ IYANHQRIWL GTFKSENEAA MAYDSAAIRI RSGDCHRNFP WTKVTIEEPN FQKLYTTETL LNMIKDGSYR TKFSEYLRDR SESTQTSASP STEKAHNNGG TSIKQLFQKE LTPSDVGKLN RLVIPKKYAV KYFPRISAST TENVEHVDDD RDLQLLFFDK MMRQWKFRYC YWKSSQSYVF TRGWNRFVKE KQLKANDTIA FYLCEAAKSS DSKTTFCVVD VKNRDNSGGL VENETTCSEL QLNLRHGEVE ESVSPKHIDD ELKDEREVKG FKLFGVHIK // ID A0A0A0LTQ8_CUCSA Unreviewed; 609 AA. AC A0A0A0LTQ8; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN64374.1}; GN ORFNames=Csa_1G050130 {ECO:0000313|EMBL:KGN64374.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN64374.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN64374.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN64374.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN64374.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN64374.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002922; KGN64374.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 165 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 608 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 165 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 546 608 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 609 AA; 69237 MW; 99D7D51F933A5AE7 CRC64; MKLNLGIDLD DVIFKIYLMT SQNASLKLRK SFPSLCFSRR QKKMSSKLKA CTKCTQRCLH LHRKTGNLSS VTSFFKVMFG DHFSEVLYFP PLFAATVSRL VNKKVVLEDA LGEQWNITVS DCEGSLAFQE GWNAFSSEHG LETGDFLIFN YIMDLHFNVS IYTKTGCEKI EFPKKRNMRK RTSTGPLLET TNEGLTNPQA SYPSVGSESN MALSQDKRIM AGSQNMNVNW NKRQKSRRND EGRGLLCETD VVDDSYCFIN QNKDVGLEDN RSPLLDLFFM EMQMVNPSTK KNTTKIVAED ELNPNCTSSS ANAAIIVPLV NDTLVDIKGE KEALPLDTSA NKMIDKIQCF EQANIKMSVS DTDPCHDKTI EVPFISAAKY SDTNVERFCE TPLKMVKACQ NVPAICNTPS TITRHDLGSN EKRTSSTEHC CSVKQEYAPN SKEVRKWDVT NIIKKESLEI KTEVNNFGDS IKQILEPKVI KEEYIEMSNQ SGRDNDDDNN YENPIETPAH ISCIVAKDTL SFLELPTSLH LSYSRGRRNP EKKKIVLLRD PRKRLWPILY HEMPNVKVLT SGWEAFRSGN EIQSGDECLF RIEDEVERIF EVSIRKCKN // ID A0A0A0LV82_CUCSA Unreviewed; 838 AA. AC A0A0A0LV82; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 12-APR-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN63921.1}; GN ORFNames=Csa_1G027500 {ECO:0000313|EMBL:KGN63921.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN63921.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN63921.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN63921.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN63921.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN63921.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002922; KGN63921.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 543 593 CW-type. {ECO:0000259|PROSITE:PS51050}. SQ SEQUENCE 838 AA; 92649 MW; ABB87CE49B6E39E1 CRC64; MADTKSTTTK IRRDEISNGF DAVTGGNVGL LRPASVKDQV VGNGINEEKL LQLCNIMEAN EPDHFQQSQR VDRSASPTQN RGENLRNPFG EVGSSFFNMN KIPVNCQPSV GSFTYSKLDT SRPHLELKDM KESLTQPSLS ITLGVPLGTP NFVVPCPGSA AHEDEKSILP FQQGQRSRPI FPKLIKTGTT VNSEARKGMA PLVRIARPPA EGRGKNQLLP RYWPRITDQE LEQLSGDLNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG LPVKVQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQSM QLRAGDTGLN KVSALQGSSP IIDSNLLLNP TQFNMKILSR EKFTPLFTTY YLRANFILIK FHFCNAVTFS RIDPGGQLVM GFRKATNSTD VQDAKIPTLS NGSHSGDASF SRVFQNLPSR AGGDTSLHKS ENFGGMSNHV SGQQPILTME KKGARNIGSK SKRLLMHSED ALELRLTWEE AQDLLRPPPS ANPTIVTIDD HEFEEYDEPP VFGKRTIFTA RPTGEQKQWA QCDDCSKWRR LPVDVLLPPK WSCSDNVWDL SRCTCSAPEE ISTKEQENLL RASKDFKKRK IVKSQKSIQE LEPSGLDALA SAAVLGDSIA DLQESGTTTR HPRHRPGCTC IVCIQPPSGK GKHKSTCTCN VCLTVKRRFK TLMLRKKKRQ SEREVEPLLK DRNPQLDETG MSGTLRGTSL QTNYSENEGS QSRIKDEEAA NSSGQIDLNC HPDREDMELE GAGLSTMSLV EAASQPVDSY SKQIGVSSVT SEQQSSQPSS VESERRLSGE VYHGSGHEST SDGCKEHH // ID A0A0A0LVD9_CUCSA Unreviewed; 899 AA. AC A0A0A0LVD9; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=Csa_1G536820 {ECO:0000313|EMBL:KGN65880.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN65880.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN65880.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN65880.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN65880.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN65880.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002922; KGN65880.1; -; Genomic_DNA. DR RefSeq; XP_004150775.1; XM_004150727.2. DR GeneID; 101211705; -. DR KEGG; csv:101211705; -. DR Proteomes; UP000029981; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99671 MW; D5F57EE6F11A2193 CRC64; MRLSAGGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE VDAQIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSAQELKEA YLPAELGTPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL SSDSMHLGLL AAAAHAAATI SRFTIFFNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPTG LPSFGIKDSD LGMNSPFMWL RGDNSDRGIQ CLNFQGAGVS PWMQPRLDPS MMGMQSDMYQ VMATAALQEM RAIDYSKISP ASVLQFQQPQ SLPCQSSTLM QPQMLHQSQP QQAFLQSVQE NQQHSQPQSQ TQSHHLQPQL PQQSFNNHSQ QHQQQPRQTQ PLDHQQIPSS IPAISQFASC SQSQSPSLQT VPSLCQQPSF SDSNGNPATS PTVSPLHSLA GSFVQDDSSQ LLNLQRAHSV IPSAGWPSKR AAIDPLCTGA SQYFLPQVEM LGTQQSSISQ NTVALPPFPG RECPIDDREE SSDPQNHVLF GVNIDSSSLL MQNGMSTLRG VCNDSVSTTL PFSSNYMSTA GTNFPVNPTM TSSNCIDESG LLQSHENVGQ VNPPNGTFVK VHKSGTYSRS LDITKFNSYP ELRSELARMF GLEGELEDPL RSGWQLVFVD RENDVLLLGD GPWPEFVNSV WCIKILSPEE VQDMGKRGLE LLNSVPIQRL SNSTCDDYGS RQDSRNLISG IASVGPLDY // ID A0A0A0LXD8_CUCSA Unreviewed; 745 AA. AC A0A0A0LXD8; DT 07-JAN-2015, integrated into UniProtKB/TrEMBL. DT 07-JAN-2015, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGN66438.1}; GN ORFNames=Csa_1G605670 {ECO:0000313|EMBL:KGN66438.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN66438.1, ECO:0000313|Proteomes:UP000029981}; RN [1] {ECO:0000313|EMBL:KGN66438.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN66438.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN66438.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN66438.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002922; KGN66438.1; -; Genomic_DNA. DR Proteomes; UP000029981; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR002347; SDR_fam. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00081; GDHRDH. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 107 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 176 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 107 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 176 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 745 AA; 82520 MW; 134716B89670FB25 CRC64; MEDEASSSLL SHIKNPILAE EVSDSNFTYY AIPEAKRPRL DNDLNDVMAV GKFKGVVPQQ NGRWGAQIYA NHQRIWLGTF KTEKDAAMAY DSASIKLRTR DSHRNFPWTR RTIEEPNFQI KFSTDAVLSM IKDGSYYSKF SAYLRTRSQI HDTNIQNPKK IDNGDGDSLF SCSHLFQKEL TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENGDDIEIVF YDTSMKIWKF RYCYWRSSQS FVFTRGWNRF VKEKKLKAND IITFYTYESC GREENGGSLN FIDVIYKKPE DDQSESSCLA AEKESVKNEK ILEREKQNEE KDYEKMKKKE LLSFELNHND NKVGEKRIRL FGRIAFSKMS TTTAPNLQMA TLGSYKLSSP RGFKGIVTPS LGGHLKAMPW AKLWSVYNVS SLKYFHLNSN TSSSTRFGKI AIKARSGSSE NGPIAGLPVD LKGKRAFIAG VADDNGYGWA IAKSLAAAGA EIIVGTWVPA LNIFESSLRR GKFDESRVLP DGSLMEISKI YPLDAVFDNP GDVPEDIKTN KRYAGSSNWT VQEVAESVKK DFGTIDILVH SLANGPEVSK PLLETSRKGY LAALSASSYS YISLLKHFVP IMNPGGSSIS LTYIASERII PGYGGGMSSA KAALESDTRV LAFEAGRKNK IRVNTISAGP LGSRAAKAIG FIDKMINYSL ANAPLQKELS AEEVGNAAAF LVSPLASAIT GSVIYVDNGL NAMGVGLDSP ILDGL // ID A0A0B0ME64_GOSAR Unreviewed; 365 AA. AC A0A0B0ME64; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHG00438.1}; GN ORFNames=F383_17634 {ECO:0000313|EMBL:KHG00438.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG00438.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG00438.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01129007; KHG00438.1; -; Genomic_DNA. DR RefSeq; XP_017617322.1; XM_017761833.1. DR GeneID; 108461865; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 41889 MW; 85725B41498D4552 CRC64; MSQPVGPSLP LNNSSCIFYK LIVASILQDK KLRIPNKFVK KFGNELSSVA TLTVPGGCQW LVELREDNKR IWLDNGWNSF VEYYSICIGY FVVFKYEGNS HFGVHVYNLK SSEINYLSNN SREPGDFAEI TGSSSYFLVD KDVDESLDHE KKKYKISTCL HQENELHDLR ATFQSTQDKG IQFNGVELTS IGDEGGPCFS NETLRYTIKQ EVEPIMDENE PFRKFKVKEE LPTLNSPSVL RRRRDVTAEE KQGAFHAASM FKPDNPFCRI ILRPSYVYKG VLLHLPRCFA RRYLNGVDGV ITLQIPEGKK WPVQCVYCND NLKFSKGWAE FVLDNNLDEG DVCIFELINT KEIVLKVTIF RALRD // ID A0A0B0MHY8_GOSAR Unreviewed; 693 AA. AC A0A0B0MHY8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_21897 {ECO:0000313|EMBL:KHG01748.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG01748.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG01748.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01214056; KHG01748.1; -; Genomic_DNA. DR RefSeq; XP_017605520.1; XM_017750031.1. DR RefSeq; XP_017605526.1; XM_017750037.1. DR GeneID; 108452255; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 670 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 693 AA; 77054 MW; 759D56710C7E4D90 CRC64; MANAQVNPRG SSIAHSESGS SDDDLYAELW KLCAGPLVEI PRNHERVFYF PQGHMEQLEA STNQELNNQA PLFNLSSKIL CRVIHVQLLA EQETDDVYAQ ITLQPEADQS EPTSPDPCPA EVPKRTVHSF CKILTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL AAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGARR LARQQTTMPS SVISSQSMHL GVLATAAHAV TTQTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM RFEGEDTPDR RFTGTIVGVG DFSPHWSESK WRTLKIQWDE PATIQRPERV SPWEIEPFAP SASINLVQPS VKNKRPRPVD IPVSEITTNS AGSTFWGRGS TQSHELTQVG STPEIQSSES QVIWGMRQKE ADYSRGYNSN AWPHSPLVNV SLNLFPNSVS DKNRTEKPQT TLTGYALPSL SRPSKGLMHD QVEKGKKSEI STGCRLFGFN LTDTISAVIP TDKEQTNTTV DHNGVWGYLA AASHIDQNPE TAKQKHVAAE ASSKEMQAKQ GASTTSTRSR TKVQMQGIAV GRAVDLTVLK GYDDLINEVE KMFDIKGELR PSGKWSVVFT DDEGDMMLVG DDPWMDFCKM VRKIFIYSSE EVNKISPRCK FAVSSLDGEG TAVTIDSEHK SET // ID A0A0B0MIX7_GOSAR Unreviewed; 859 AA. AC A0A0B0MIX7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_22205 {ECO:0000313|EMBL:KHG00740.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG00740.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG00740.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01147635; KHG00740.1; -; Genomic_DNA. DR RefSeq; XP_017605621.1; XM_017750132.1. DR GeneID; 108452351; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 736 820 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 859 AA; 95556 MW; A20AF7C633EF0EAF CRC64; MTNTEVAMKG NCVNGRGGES FSSGYSEPND GRNTVEGQNG HSTRQAPATD PETALYNELW HACAGPLVTV PREQDRVFYF PQGHIEQVEA STSQVADEQM PVYNLPSKIL CRVINVQLKA EPDTDEVFAQ VTLLPEPNQD ENTVNKEPPA PQPPRFHVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPTQE LVAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA YMTKTIFTVY YKPRTSPAEF IVPFDQYMES MKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GIEDADPKKW QDSKWRCLKV RWDETSTIPR PERVSPWKIE PALAPPALNP LPMPRPKRPR SNAVPSSPDS SVLTREGSSK AIVDPSPATG FSRVLQGQEF STLRGNFAES HESDTAEKSV IWRPTVDDEK IDVVHTSRRF GSENWMSSGR HEPAAYTDLL SGFRSNADSS LGYCPPMVDQ TSLAGNPMRR QLLDQEGKLG SWSLMSSGLS LKLVDSNAKP SVQGSEVPYQ ARGNGRFSGF GEYPVLQGHR IEHPHGNWLM PPPTSSNYEN PIQSRDLMPK ASLGQDHENG KSREGSCKLF GIPLISNSVA SEPTVSPINA TNKAASHVEA APNQAHTFTF DQKSEQPKFS RLAENLSIFN EQEKSFQLGQ PHTREVQSKS PSASTRSCTK VLMQGSALGR SVDLTKFNNY DELIAELDQL FEFGGELMAP KKNWLVVYTD DEGDMMLVGD DPWQEFCSMV RKIGIYTREE VQKMKPGSLN SKGEDNPVSV EGPDAKDVKC TPASSTENC // ID A0A0B0MJ83_GOSAR Unreviewed; 372 AA. AC A0A0B0MJ83; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHG00437.1}; GN ORFNames=F383_17633 {ECO:0000313|EMBL:KHG00437.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG00437.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG00437.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01129007; KHG00437.1; -; Genomic_DNA. DR RefSeq; XP_017616522.1; XM_017761033.1. DR GeneID; 108461251; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 43286 MW; 73FE90C8374F790F CRC64; MPRPFFHKLI LSTTLQHKKL RIPDNFVKKF GDELSVAAAL TVPDGHVWRV GIRKADNKVW FHEGWQEFVE RYHIRVGYLL VFRYEGNSCF SVSIFSLYNS EINYQTNAFV GTQYYHRKPY PFEELEDDEC ISPALQNLFS ASKVNNCMNW SGEINFRALK GMNSQSFRGA VLPKPNKPGR KKQKFDHAEP DSSVGQEYDV YTNFRLYESA SARKRSVTTE ERERAINAAK SFEPMNPFCR VVLRPSYLYR GCIMYLPSCF AEKYLSGVSG FIKLQLPDGR QWPIRCRYRG GKAKFSQGWY EFTLENNLGE GDVCIFELLR SREFVLKVTV FRVRESAPVS MKCRPELNQL TYSEHILPDD VKPIRVNKSM PF // ID A0A0B0MJI2_GOSAR Unreviewed; 326 AA. AC A0A0B0MJI2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHF99618.1}; GN ORFNames=F383_17006 {ECO:0000313|EMBL:KHF99618.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHF99618.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHF99618.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01086693; KHF99618.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 326 AA; 37400 MW; 0F8A79021A0CABA4 CRC64; MLTSSMNHPK TLHFFRIILS QTQKLPLPKR FVSLYGDDLS NTVIVKAPTG PEWKVELMKC DGEIWLANGW KDFADYFSLK YGNLLIFRYE GHSRFYVFMI FDQTTLEIEY PNGIDNHEVE LQIPDVEEVG SEDVVEIVNN VSRSRKTTEK TRSSPRKRTR MQGATNAKKS EFRMSSRDGS KIGPEQAGGG TSAAQRLSAS SANHFGSEKP FFVVNIQPSY ITAFRANVPF TFARTYFTWK EADVVLKDRD GRTWPIHLKV YNKYHCTSFG RGWKAFAIDN DLRVGDSCAF ELLEGPEISF RVTVFRNPED SNDRHTSSTY NTYKHH // ID A0A0B0MKG0_GOSAR Unreviewed; 1104 AA. AC A0A0B0MKG0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_01306 {ECO:0000313|EMBL:KHG00832.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG00832.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG00832.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01152374; KHG00832.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 977 1070 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1104 AA; 123223 MW; 9BAC1C14161D4936 CRC64; MKAPPTGFLA NPAEGDRKSI NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICVLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFSMQ PPAQELVARD LHENAWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDAKSQL LLGLRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANFS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPRRVS VWEIEPVVSP FFICPPPFFR PRFPKQPGMP DDDSDVENAF KRAMPWLGDD FGMRGTPSSI FPGLSLVQWM NMQQSNQFPA AQSGFFPSTV SSNLLHSNLS IDDPSKLLNF QAPVLPAPNM QFNKANPNQV NQLPQAPTTW SQQILQTPVN QHQQQQPQQQ LQQQQPQQPQ QQPQPQSHLL HQQQPQPQPS PKQQQHIHQE QRQQPQQQQP LQQQPTLPPQ VTNGIVAPNQ ISNQNLHQPA VYSHLQQQQL LTSNSLSTQT TLSAHMTSYP LTSLPQDTRV QQQMEQQPNL MQRQQQQTQL QQSLSQRTQQ QPQILQLSQQ GLSEQLQLQL LQKLQQQQQQ SAQQLLSAAG SLLQPPMLQQ QQTHQQNQPL QQLPLSQSQV QPLGSNGFST SMFVQPQQLS VHQSQSQSKQ LMAMRSNSGL IDGDAPPSTL SSTNNCQVSP SNLINRSHHV PSILMTDPVV EPPSTLAQEL LSKPDIQIKH EPPTSRGLDQ SKYKSSVTDQ LEASSSGTSY CLDAGTIQHN ASLSFLEGDV QSHSRNNLPF TANIDGLAPE TLLTREYDSQ KDLQNMLSNY GGNPRDIDTE LSTAAISCQS FGVPNIPFKT GCSNDVAINE TGVLNGGLWT NQTQRMRTYT KVQKRGSVGR SIDVTRYKGY DELRHDLVRM FGIEGQLEDP QSSDWKLVYV DHENDILLVG DDPWEEFVSC VQSIKILSSA EVQQMSLDGN LGNVSVPNQA CSGTENGNAW RGHYDDTSAV SFNR // ID A0A0B0MLK9_GOSAR Unreviewed; 798 AA. AC A0A0B0MLK9; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_21364 {ECO:0000313|EMBL:KHG01675.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG01675.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG01675.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01209207; KHG01675.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 776 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 798 AA; 88296 MW; 79FE98BF695CCC66 CRC64; MRLSSSGFNQ QTEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKNV FLLPAELGTP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELVA RDLHENEWKF RHVFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYY TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPGRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS ALPSFHAFKD GDTNINSQMM WLQGGIGDQG LQSLNFQGFG VAPWMQPRLD TSSIQSVQPD LYQAMAAAAF QEMRTVDSSK IGSQSLLQFQ QPRSMTDGSP AIIQRQMLQH QAQSSSLPTA ASECQQQTFS DPLGNSLALS NASSMQSILG SLSHAGASHL LNLKGSNPII SSSLLSKPVA IEPQLSSETA NYVLPQVEHL GMVQSNVLSN LLPPFPGREY SAYQSSTDPQ NNFLFGVSID SSSLMLQQGM TNLKNTGNEN DSLSMPYAAS NFTSASGTDF PLNSDMTTSS CVDESGYLQS SEYVDQVNPP TGTFVKVHKL GSFGRSLDIS KFSSYNELRC ELARMFGLEG QLEDPQRSGW QLVFVDREND ILLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKEGLNPAAS DPSQTHHQ // ID A0A0B0MM46_GOSAR Unreviewed; 343 AA. AC A0A0B0MM46; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHG00016.1}; GN ORFNames=F383_00685 {ECO:0000313|EMBL:KHG00016.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG00016.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG00016.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01107541; KHG00016.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 238 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 238 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39664 MW; 5AA85C061EC6FFDA CRC64; MPRPFFHKLI LSTTLQDRKL RIPDNFIKKF RDELSVAAAL TVPDGHVWRV GIKKADNKAW FKEGWQEFVE RYYISVGYFL IFRYEGNSAF SVSIFNLYNS EINYQTNALV GNQYNLGRQY PFEELEDDEC VSPALPNLFG GSKLNCINWS GEVNHHAPKG VNNQPIRGAE LPKLKKPGRK KQKFEPSEED SSLGHEDDME MRNRFYESAS ARKRIVTAEE RERAINAAKA FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA EQHLSGVSGF IKLQLPDGRQ WPVRCLYRGG RAKFSQGWYE FTLENNLGEG DVCVFELLRS REFVLKVTVF RVMESAGLMY RSQ // ID A0A0B0MNH7_GOSAR Unreviewed; 686 AA. AC A0A0B0MNH7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_18691 {ECO:0000313|EMBL:KHG00491.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG00491.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG00491.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01131840; KHG00491.1; -; Genomic_DNA. DR RefSeq; XP_017638542.1; XM_017783053.1. DR RefSeq; XP_017638543.1; XM_017783054.1. DR GeneID; 108480158; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 654 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 108 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 75504 MW; 3AFC377FDAE9663C CRC64; MKESEKSLDP QLWHACAGPM VQIPPLNSKV FYFPQGHAEH SLAAVDFPSS PPVPALVLCR VASLKFMADT ETDEVYAKIL LMPLPSTELD IENDTVFGSD NAEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPSLDYT ADPPVQTVVA VDVHGETWKF RHIYRGTPRR HLLTTGWSTF VNHKKLVAGD SIVFLRSENG GLCVGIRRAK RGTGNGPEAG SPFLSFLRED ESKMMMMNRN GDWRGKGKLK AEAVLQAATL AASGQPFEVV YYPRASTPEF CVKASSVKAA MRVPWCCGMR FKMAFETEDS SRISWFMGTL SSVQVVDPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNVPAIH LSPFSPPRKK SRFPQHLDFP LDGQFPMSAF SSNGNPHGTG CPLVLSDNAP AGIQGARHAQ FGLSLSDLHL NNKLQSGLFL PGFQRFDPHS RISDGIMMAR RPNGTDNLSC LLTIGNSNVN EKSGNTKRHQ FLLFGQPILT EQQLSRSCSS EVVSQVINGN SSLDGSAEKT KDTSDGSRSS LEKSSTAGFL WHQDYRSTET GLDIGHCKVF LDSEDVGRTL DLSVLGSYEE LYRRLANMFG IERSKMLGHV LYRDATGAVK QTGEEPFSAF MKTAKRLTIR MDSSNETVAR SWLTGIRTAE NGLGGPSKRG PLSIFA // ID A0A0B0MNI0_GOSAR Unreviewed; 431 AA. AC A0A0B0MNI0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_21793 {ECO:0000313|EMBL:KHG01922.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG01922.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG01922.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01227797; KHG01922.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 48201 MW; EDEC58BB2FDB27FB CRC64; MKAPPNGFMA NSAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD LHDNTWPFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGTRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVITP FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDAPSSI FPVSSCSIRI LSINGFFESA P // ID A0A0B0MQJ1_GOSAR Unreviewed; 303 AA. AC A0A0B0MQJ1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG04353.1}; GN ORFNames=F383_29408 {ECO:0000313|EMBL:KHG04353.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG04353.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG04353.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01410009; KHG04353.1; -; Genomic_DNA. DR RefSeq; XP_017613293.1; XM_017757804.1. DR GeneID; 108458417; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 33718 MW; CABD5A769FF77C2E CRC64; MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PAMFLSSIHA ARHFNLNHDD DEELDDQTSN LDTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGSDSSDKG LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF IGWRRRGAAV VVAPAATDGG NAVMENNGGG GGGGNGGWSN RRLYRRYPHL GHIQGLEANV PYQPDCIHTG SIVQNQATAA GNPKRLVRLF GVNLECHQLD ESPPSTPASS MVSSQGPTAH QFY // ID A0A0B0MR68_GOSAR Unreviewed; 763 AA. AC A0A0B0MR68; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor ABI3-like protein {ECO:0000313|EMBL:KHG04618.1}; GN ORFNames=F383_28467 {ECO:0000313|EMBL:KHG04618.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG04618.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG04618.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01415330; KHG04618.1; -; Genomic_DNA. DR RefSeq; XP_017640096.1; XM_017784607.1. DR GeneID; 108472972; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 621 723 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 621 723 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 763 AA; 85400 MW; 4BD7558DCA06675E CRC64; MRGVQQQQQQ QQKMGGEDVH AVGGNEGNPS GFDDVVVEVE RVMGSEEREM WLDRQQDDEL LDVNDASIFY GDFPPLPDFP CMSSSSSSSS TPAPVKAIAC SSSASTASSS SSAASWAVLK SDADEDMERK NNGHHIHLHH HHHQNYIQNS HQQEHHGKVD GTPAALSSTA STEIPQPQDQ NVMDGVDCMD VMENFGYMDL IDNNDLFDPS SIFHHDDTGL EEFQQDQQNQ QQQEHDSTQQ QLGQQVGAMM YSKNEDQTQE EKASDDLAMV FLEWLKTNKE TVSAEDLRRV KIKKATIECA ARRLGGGKEA MKQLLKLILE WVQTNHLQRR RIKESASNNQ PDHPYQYSNP NNLNSSSNPN LNCNPILPSE PNSCFSQPAW VPQPAYTTDP EAAPPPLPGF TPVVGYMGDP FANGAPNVTT HHHPYQPPTD YQVLDTAQTW PPSQFALAAS QYNSFADNNL HPAPLQQQPS AFPGYVNQYP YHYVPGHNNN DQRLLRLGSS ATKEARKKRM ARQRRFASHH RNHGHHHNNQ QSQLQNQSID QHERLVKGNC VAAAQANPGN WVYWPSVAGA LASNPPPVLP GDVTMVHPVD QPTMQGQTYQ RQVATDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISIAM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG DFVRTNGLQE GDFIVIYSDV KCGKYLIRGV KVRQSGTKSE TKRPGKSQKN HHTNSPSAAV NGSLPTPITQ TVK // ID A0A0B0MRI5_GOSAR Unreviewed; 576 AA. AC A0A0B0MRI5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_27934 {ECO:0000313|EMBL:KHG03335.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG03335.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG03335.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01346488; KHG03335.1; -; Genomic_DNA. DR RefSeq; XP_017643800.1; XM_017788311.1. DR RefSeq; XP_017643801.1; XM_017788312.1. DR GeneID; 108484503; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.530.20; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR023393; START-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 576 AA; 63419 MW; 94E570A12EB43CF0 CRC64; MPPPRPPAAE VRHVNLRIWR ACAGSSVQIP TVNSVVYYFP QGHVEQSCGS TPLLSSLVLS RPLIPCVVSD VHCLADPRTD EVFIKLFLVP VEPPRLPNQF LDVNGEVEYP DKVVSFAKIL TPSDANNGGG FSVPRFCADS IFPPLDYNAD PPVQTLTVTD VRGGVWEFRH IYRGTPRRHL LTTGWNKFVN QKKLIAGDSV VFMRDCNGKM FIGVRRALKR GEGGGDSGRW REPTGGGETK GDGRGRMTAE VVVEVAERAA KRLPFEVVYY PRPGWTDFVV RAELVEAGLN IYWAGGTRVK MVVETEDSSR MTCFQGTVIS GALSDSGPWI GSPWRMLLVA WDEPDLQNVR RVNPWQVEIA TSLPLQSSFP LAKKSKFSQE SGLADAEGEI MFPMTGLTNS TMRYMNPSML NYNSFPAGMQ GARQNHFHVQ GLTNHVSENT PMMSTDASSS NYWVPKLKRI STELNIGSSQ SDNLSPDSQS SMVSFGTEFT ENAGCNLSKV GVNSFQLFGK TIHMKEPGGS MFGNVGSMED DSGKRYDEAV SEKNSLDLSS TNNYSKLHDR IDVKSESASA FKGFSL // ID A0A0B0MRM5_GOSAR Unreviewed; 596 AA. AC A0A0B0MRM5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG01596.1}; GN ORFNames=F383_20813 {ECO:0000313|EMBL:KHG01596.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG01596.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG01596.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01203177; KHG01596.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 212 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 212 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 539 566 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 596 AA; 66305 MW; A97776D45493FAF7 CRC64; MDRRVKKEAE EIPQRTMSFA GRRLKSAGEE DFILALSTHT PTLNPSSSEK KEISKKANAL TERKQKRKKC QSETIIKPAV SDCGEKKRGS MKNKDVGDGR CIAEIKSPAM ICAEEIQSNL EPEFPSFAKS LVRSHVGSCF WMPDNETGMW LALILVAAAL LAQSPPAAPP SCSTISTSLT LLSVISIGSI PLVVSHLSKL LSLDLSYDDG LIFEGDVTKN VVGKLKQGLP GMFCKTHLPR KDTTITLEDE SGNQFHVKYY ADKTGLSAGW RQFCSAHNLL EGDVLVFQLV EPTKFKNLIL GGQFQVCRIS PCPNIGWAST MSEGDEVAFP PFLTKISFSD LPSPEDDAET GPTVSKSTKR KRPKSLPLAS VRKKNKRSGL QRLSCNVGQP AEQSENDSEE VGSEVLEGFK RTVSAIQFKD ITSFENILVD GLVIDPELSE DIRSKYYQLC CSQNAFLHEN IIQGISFKFK VGIISETVNI ADAIRTCKLT TSRDEFDSWD RTLKAFELLG MNVGFLRTRL HRLVNLAFES EGAAETRRYF EAKAERDQTE NEIRNLEAKL TELKDASKTF GFEIESLQSK AETNEFRFEK EVKAPW // ID A0A0B0MSB4_GOSAR Unreviewed; 695 AA. AC A0A0B0MSB4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_03781 {ECO:0000313|EMBL:KHG05023.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG05023.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG05023.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01422405; KHG05023.1; -; Genomic_DNA. DR RefSeq; XP_017603180.1; XM_017747691.1. DR GeneID; 108450182; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 77316 MW; 6CABE7FF04F335E0 CRC64; MRKEAEKSLD PQLWHACAGS MVQIPPVNSK VFYFPQGHAE HSLYPVDFSS SPPIPALLLC RVASVKFLAD AETDEVYAKI MLVPLPNTEP DLENDAVFGG GSDNVEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYTADPPVQT VIARDVHGEI WKFRHIYRGT PRRHLLTTGW SSFVNHKKLV AGDSIVFLRA ENGELCVGIR RAKRGNDTGA ESGLGNGNYV SPYGGFSGFL KEDESKITRK RSPRGKGKVR AEAVVEAVAL AANGQPFEIV YYPRASTPEF CVKASAVRAA MRVPWCSLMR FKMAFETEDC SRISWFMGTV SSVHIADPLR WPNSPWRLLQ VTWDEPDLLQ NVERVSPWLV ELVPNMLPVH LSPFSTVTPR KKLRLPEHLD FPLVEQFPMP PFSGHPLRSS NPLRCLSDNA PAGIQGARHA QFRLSSSDPH LNKLKSGLFP SGFQLFDPQP RVPNGISMTK HTDSNDDNLS CLLTVGNSSP KKKSENGKRH QFLLFGQPIL TEQQLSHSCS TGVKTSVKNE DKRKDSSNGS GSALENQLSP EKSFTTRLLW RQDYQTPEPG SATGHCKVFL ESEDVGRTLD LTVLGSYEEL YRRLANMFGR ERSEMLGHVL YRDATGAVKQ TGDEPFSTFM KTVKRLNIRM DSRNDADGRS WLTGIRTAEN RLEGPNKRGP LSIFA // ID A0A0B0MU40_GOSAR Unreviewed; 679 AA. AC A0A0B0MU40; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_06627 {ECO:0000313|EMBL:KHG27848.1}, GN F383_07771 {ECO:0000313|EMBL:KHG03862.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG03862.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|EMBL:KHG03862.1} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RT "G. arboreum L. cv. AKA8401 A2 genome assembly version 1.0."; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01391868; KHG03862.1; -; Genomic_DNA. DR EMBL; KN442607; KHG27848.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 567 648 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 679 AA; 75570 MW; 7950A14077D3C043 CRC64; MMANRVVSFS QTNNVSSEGN GCDDLYMELW KLCAGPLVEL EASTNQTLNQ RIPLFNLPSK ILCRVVHIQL LAEKETDEVY AQVTLLPEPS QSEPTTPDLC PPESQRPTVH SFCKVLTASD TSTHGGFSVL RKHATDCLPK LDMNDATPTQ ELVAKDLHGY EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GENGELRVGV RRVVRQHSIM PSSVISSQSM HVGVLATASH AVSTQTLFVV YYKPRTSQFI IGLNKYLEAL SNKFAVGMRF KMKFEGEDSP ERRFSGTIVG VEDFSPLWKD SKWRSLKVQW DEPASIPRPD RVSPWEIEPF AAPIPPSLTQ PVAAKNKRPR PPAEIPATDL SSTTSAPYSG VTHCHDLTPQ NIAAEPKGNE NPVMGHHMWT EMSSGCSSVV QTLNKGSWLS SPGTCVPHHL FPEAREDKTR FSAWPVPSGF SNPQLNEDST FDSTEKAKRS ETSASCRLFG IDLINHSASS TPLERTPAQL STMIMGITEV PGPSNLSSTY SDQKSEISKD SKEKKLEQLQ LSAKENQSMQ SCSSFTRSRT KVQMQGIAVG RAVDLAMFEG YDQLIDELEE MFDIKGELRP RNKWEIVYTD DEGDMMLVGD DPWPEFCNMV RRIFICSSQD VKKLKTGSKL PLASIEGEGT VISSDSSEN // ID A0A0B0MUL5_GOSAR Unreviewed; 345 AA. AC A0A0B0MUL5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHG03184.1}; GN ORFNames=F383_28275 {ECO:0000313|EMBL:KHG03184.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG03184.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG03184.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01332939; KHG03184.1; -; Genomic_DNA. DR RefSeq; XP_017620028.1; XM_017764539.1. DR GeneID; 108464308; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 39628 MW; 953E0F9432438BCD CRC64; MPRPFFHKLI LSTTLQEKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKVW FQEGWQEFLE RYYIRVGYVL VFRYEGNSAF SVSIFNLYNS EINYQTNALV GTQYNHGKQY PFEQLEDDEC ISPALQNLFG GSKLNNCINW GGDANLQTSK GVNNQPIRGS GAMKPEPKKR GRKRKFDPNV QDSSTGREDD VDMRFRCYES ASARKRTVTA EERERAINAA KAFEPTNPFC RVVLRPSYLY RGCIMYLPSC FAEKHLSGVS GSIKLQLPDG RQWSVRCLYK GGKAKFSQGW YEFTLENNLG EGDVCVFELL RSREFVLKVT VFRVMESGGL MHRSQ // ID A0A0B0MWQ1_GOSAR Unreviewed; 584 AA. AC A0A0B0MWQ1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_27934 {ECO:0000313|EMBL:KHG03336.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG03336.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG03336.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01346488; KHG03336.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.530.20; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR023393; START-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 584 AA; 64604 MW; 8B44EA9F58526357 CRC64; MPPPRPPAAE VRHVNLRIWR ACAGSSVQIP TVNSVVYYFP QGHVEQSCGS TPLLSSLVLS RPLIPCVVSD VHCLADPRTD EVFIKLFLVP VEPPRLPNQF LDVNGEVEYP DKVVSFAKIL TPSDANNGGG FSVPRFCADS IFPPLDYNAD PPVQTLTVTD VRGGVWEFRH IYRGTPRRHL LTTGWNKFVN QKKLIAGDSV VFMRDCNGKM FIGVRRALKR GEGGGDSGRW REPTGGGETK GDGRGRMTAE VVVEVAERAA KRLPFEVVYY PRPGWTDFVV RAELVEAGLN IYWAGGTRVK MVVETEDSSR MTCFQGTVIS GALSDSGPWI GSPWRMLLVA WDEPDLQNVR RVNPWQVEIA TSLPLQSSFP LAKKSKFSQE SGLADAEGEI MFPMTGLTNS TMRYMNPSML NYNSFPAGMQ GARQNHFHVQ GLTNHVSENT PMMSTDASSS NYWVPKLKRI STELNIGSSQ SDNLSPDSQS SMVSFGTEFT ENAGCNLSKV GVNSFQLFGK TIHMKEPGGS MFGNVGSMED DSGKRYDEAV SEKNSLDLSS TNNYSKLHDR IDVKSNLAWQ YMVSSRYVLR VETL // ID A0A0B0MWR0_GOSAR Unreviewed; 885 AA. AC A0A0B0MWR0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG03351.1}; GN ORFNames=F383_26676 {ECO:0000313|EMBL:KHG03351.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG03351.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG03351.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01347886; KHG03351.1; -; Genomic_DNA. DR RefSeq; XP_017606443.1; XM_017750954.1. DR GeneID; 108453059; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 340 441 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 567 617 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 340 441 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 885 AA; 97371 MW; 8F6A18798451F40F CRC64; MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVPQPE LHSRMPYEVD LSTGIDRLNV CDRLSTPSLE KKKVEDFSER LMNGTLKPGT RDIHEKGSAG INCEEQHNPC LTKFQSSLKE ESNPQFGLAV PYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGVSM HGDAEMADPT SWSKVDKSGY IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPPNHVASVV VIEGFEFEEY EDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN SWDPERSSCS VIQELTAEQL ENLLPQCNPA ASKKIKAAKQ DTENVDALEG LDTLANLAIL GEGESLPTSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCET VKRRFRTLMM RREKKQSQKE AETTSKKQQT SLPDKVPDDD PPPCTNAENS SPKQIKIASE GSEDDPNRVK SSISPFKGQI DLNIQPEREE ELSPGSDSGS MMRLLQDDTD KYLRQQSTLT SGGNSNSEVS QTQPGGGPEG EKISNSVNLG DSHQDIDRDH PVFSIKTSAS TSATG // ID A0A0B0MXK7_GOSAR Unreviewed; 553 AA. AC A0A0B0MXK7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG05520.1}; GN ORFNames=F383_30454 {ECO:0000313|EMBL:KHG05520.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG05520.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG05520.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01432148; KHG05520.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 446 542 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 446 542 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 553 AA; 62761 MW; F9BFC61679903948 CRC64; MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRGSGSV LLKGPSGYSW NVKLVQRNDD LLFDEGWADF VADHSLECGE ILVFRYDGDL VFDVKVFDQS SCEKEVAFHC KCSQAGSVFH GIVRQKRYRE EDDVSLDQDC EELLKRIRQS SFESDRDEEH CGRELILATT SCQGLTSCDE NHGEEINLSH LRFSLWSLET DGTILKITGK EDDLKLHGSG CIQMIGEFEE KKVAQSFNSC FPFFVRIMKR FNVSGSYTLN IPYQFAMEHL PNCKTEIVLR NLKGACWTVN SVPTTRVHTS HTLCGGWLSF VRSNEIKAGD ICIFELVHKF EFRVHILRVG QEDLIRQSRK AVLDRSDSTL LKKFVKNTSK VHSKLKKVQI CDNKGSKVLD KWKYGNAAKK SASVVLCSLS RSGTEKQEAA ISGLRMMLTV DEEKAARSFA SRFPSFVRIM RKFNISGSYT LKIPYKFSKE HLPYCKTQVV LRNLQGTCWT VNSLPDSKGR AVHTFCGGWM AFVRDNEIKI GDICIFELVN NYEMRVHISG SGRKGLDRQH TSL // ID A0A0B0N0S6_GOSAR Unreviewed; 376 AA. AC A0A0B0N0S6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=B3 domain-containing REM16-like protein {ECO:0000313|EMBL:KHG05314.1}; GN ORFNames=F383_31028 {ECO:0000313|EMBL:KHG05314.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG05314.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG05314.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01427942; KHG05314.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 251 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 251 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 376 AA; 42558 MW; 514323CB64A8BEA6 CRC64; MVIFFSGCSS LDFAFREIPE KFAKNIKKKL PETVTLKGPS GSIWDVRLTV DDDDTLFFNG GWKTFVKDHS LVANDFLIFK YNGVSHFDVL MFDGKSLCEK ASSYFVRKCM HTESDATHQT KRKVNENSDE ILHNSSQCGL ESGPEKSTNN DMDARPSRKP INSAASKKKI RNSDNGTRSI HAKQSLVGKE LPTFPGEVKV ERLETEYEHT TMDGDGDVFG LWHTTGKRFV TQFEKTNVLL KAQEALTNEG FMIIMKPTHV GRRFYMAVPT AWVAKYLPKD NADVILRMNK RTWKTRFYYH RSRDCGGLSG GWRNFVNDNN LEEHDVCVFQ PANIGSKPMI LDVNIFHVLQ KAVPLSQVDP LPSSPELIAS TPDMDS // ID A0A0B0N6Z7_GOSAR Unreviewed; 869 AA. AC A0A0B0N6Z7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_35574 {ECO:0000313|EMBL:KHG08457.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG08457.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KHG08457.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JRRC01498466; KHG08457.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 734 818 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 869 AA; 96724 MW; B65B32484A031087 CRC64; MTTSEISIKG NCVNGRGDSF SSGYTEPRDT RNTMEGQNGH SARTAAVRET VDPERALYTE LWHACAGPLV TVPREGERVF YFPQGHIEQV EASTHQVSEQ QMPVYDLPPK ILCRVINVQL KAEPDTDEVF AQVTLLPEHT QDENMVDKEP PILEPPRFQV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSLQPPT QELVSKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRALRQQGN VPSSVISSHS MHLGVLATAW HAYTTRTIFT VYYKPRTSPA EFIVPFNQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGIEDADPK RWQGSKWRCL KVRWDETSTI PRPERVSPWK IEHALSPPAL NPLPMPRPKR PRTNAVSSSP DSSVLTREGS SKVTVDPLPA SSFSRVLQGQ EFSTLRGTFA ESNDSDTADR SVMWPPSIDD EKIDVAHGER KFGSENWMPS RRHEPTYTDL LSGFGSNADT SRGYYPSVVD QTSVAGNSGK KQLLDQEGKL GAWSLLPSGL SLKLSDSSTD PPLQGSDVPY QARGNGRFCG FGDYPILEGR RIECTRGNWL MPPPSTSCYD NSVHSRDLMP KTSLVQEHKN GKSREGNCKL FGIPLISISS ASGPAVSHIS AFAKPVGHMQ AALHQIHALK SDKRSENSNA SQMAEDVSAF NEQEKMGQPH AREFQSKPST ASTRSCTKVL MQGTALGRSV DLTKFNNYDE LIAELDQLFE FGGELMAPQK NWLVVYTDDE GDMMLVGDDP WQEFCAMVRK IGIYTREEVQ KMKPGSLGSK FEDIPVPSEG TVAKEVNCPS ASSAKNCSGF LMETWGVAW // ID A0A0B0NAI6_GOSAR Unreviewed; 694 AA. AC A0A0B0NAI6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_16426 {ECO:0000313|EMBL:KHG11573.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG11573.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN396111; KHG11573.1; -; Genomic_DNA. DR RefSeq; XP_017641962.1; XM_017786473.1. DR GeneID; 108483202; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 581 662 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 77717 MW; B68416CCC94CAF89 CRC64; MANRGGVFSQ TNNVSSEGNG GDDLYMELWK LCAGPLVEAP RARERVYYFP QGHMEQLEAS TNQELNQRIP LFNLPSKILC SVVHIQFLAE QETDEVYAQI TLMPEPNQPE PTTPDACLPE PPKPTVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM NQATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRV ARQQSSMPTS VISSQSMHLG VLATASHAVS TQTLFVVYYK PRTSQFIIGL NKYLEALSNK FTVGMRFKMR FEGEDSPERR FSGTIVGVED FSPYWKDSKW RSLKVQWDEP ASIPRPDRVS PWEIEPFAAP IPPTLGQPVA AKNKRPRPTA EIPALDLSST ASAPWNSGVM HTHDLMRRNI TAEANRNENH VIWHMQTEMS SSCTSVLKTQ NEGSWLSSPC MSVSKHRFPD ARDDSKCASG WPVLSGLSNP QVNNDSTFDP KEKVKKSETA SSCRLFGIEL INHSASSRRL ERTPTQLSTM TASTAEGHHT LSPNNSCQKS EISKDSNEKQ EQLQLQAKEI QSRQSCPSST RSRTKVQMQG VAVGRAVDLA MLEGYDQLID ELEEMFDIKG ELRPRNKWEI VYTDDEGDMM LVGDDPWQEF CSMVRRIFIC LSQDVKKLST GSKLPMACIE GGEGTVISSE SIEN // ID A0A0B0NBW5_GOSAR Unreviewed; 843 AA. AC A0A0B0NBW5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_11534 {ECO:0000313|EMBL:KHG10285.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG10285.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN393519; KHG10285.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 710 794 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 92727 MW; 0F1462E5A3F4E716 CRC64; MRLSSAGFNP PNQEGEGGGE VENYHHPLAL FLALENVGEA DFFKYTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV ITLSKYVKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEVE PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG VSPWMQPRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GAASLQFQQP QNGPCRPAAL SSPLQSIPSL GQQQSFSDSN GNPVTSPVVS PLHSLLGSFP QDESSNLLNL PRTTPVMTTS AWPSKRAAVD VLSSGSPQCV LPQVEQLGPS QTNMSQNSIS LPPFPGRECS IDQGGTDPQS HLLFGVNIEP SSVLMQNGMS GLRGVGTDSD STSIPFFSNY MSTAGNDFSV NPAMAPSSCI DESGFLQSQE NVGQSNPQTR TFVKVYKSGS FGRSLDISAF SNYNELRSEL AHMFGLEGQL EDPLRSGWQL VFVDRENDVL LLGDDPWPEF VNSVWCIKIL SPQEVQQMGK RGLELLNSVP VQRLSNGSCD DYVSRQDSRN LSSGIASVGS LDY // ID A0A0B0NCW8_GOSAR Unreviewed; 654 AA. AC A0A0B0NCW8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_03252 {ECO:0000313|EMBL:KHG09659.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG09659.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN391785; KHG09659.1; -; Genomic_DNA. DR RefSeq; XP_017645690.1; XM_017790201.1. DR GeneID; 108486248; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 654 AA; 72505 MW; 85C3DA7CE49C9922 CRC64; MELEKSLDPN LWHACAGSMV QIPPINSKVY YFPQGHAEHS LNSVDFPFSR QIPPLVLCRV DSVKFMADVE TDEVYAKIML TPLQNNKPDV GDDDGVSNGG CNNIEKKAAS FAKTLTQSDA NNGGGFSVPR YCAETIFPAL DYSADPPVQT VVAVDVHGQL WKFRHIYRGT PRRHLLTTGW SAFVNRKKLV AGDSVVFLRA ENGGIRVGIR RAKLGIGDGD CYGSLGFYGD SKRNGKVKPE EVLEAAKAAS GGRKSFEVVY YPRTSRPEFC VRASAVNTAM KVPWCCGMRF KMAFETEDSS RISWFVGTIS SVQVADPVRW PDSPWRLLEV TWDEPDLLQN VNRVNPWSVE LASNVPAIHL SPFLRPVKKL RLPQHLDGLL VQSFPSKPLS PSNPFYRLSD NAPVGIQGAR QVQFGLPLSD LHLKNNLNSG LCLSGFQRFD LHDRIPDTFT NSCNNLSCNK SKIPKKCRFL LFGQPILTEQ QLSQSSSSEA VSEVVSGNSC KTKDSSNGSG SVIGNQFSPE KSSTARFLWD WDNRAIEPCM DTGHCKVFME SEDVGRTLDL SVLDSYEDLY RRLANMFGIE RSKMSGHVLY RDATGDVKRT GDEPFSAFMK IAKRLTIRMD SSNNTIERSR LTGTRAAENG FHGSNKTGPL SIFA // ID A0A0B0NDC0_GOSAR Unreviewed; 1105 AA. AC A0A0B0NDC0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_16456 {ECO:0000313|EMBL:KHG10687.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG10687.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN394426; KHG10687.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 993 1077 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1105 AA; 122332 MW; 5A0A84326350ED9E CRC64; MNVVSAGVGS TANAAAPGSA EGEAPERRHI NPELWQACAG PLVNLPAAGT HVVYFPQGHS EQVAASMKRD VDAQIPNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSSFDKEAL LRSDLSLKSN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QTPAQELVAR DLHENVWKFR HIYRGKPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDETQQ LLLGIRRANR QPANLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASLSEFVIPL AKYYKAVYNH QISPGMRFRM MFETEESGTR RYMGTITGIS DIDPVRWKNS QWRNLQVGWD ESTAGERRNR VSIWEIEPVT APFFICPSPL FRSKRPRQPG MLADEYSDLD NLFKRPMPWL GDDICLKDSD AHPGLSLVQW MNMQQNPLLA NSMQPNFMQS LAGSTMQNFD GADLSHQMGL SAPQMPQPNN LQFNAHRLPQ KVQQLDQVPK LPSTMNSLGS IIQPQQLNDM TQQSRQNLVA QTLPSSQVLQ PQALVRSNNI LHQQQTSNPT HQLPLSLPQN LQQQQQYLVG PNHPQNLMHS QLPDPLNQHL QVPDNQVQFQ LMQKLQQQQQ LLLAQQSALQ QPGLLAQPQD QQRQLLDASQ SFSSSVTASQ VLEMPQNIPT LLPQSNVAPQ QMPKNNSQAN VWFSQPPLQS KVQQQQTGML PEVPGLVGPF QTTATNQFST AVSSVMTSAA VAAPSVITDD NPSCSTSPST NCPSVLQPMI DSRVHRSAGL GDDISQSAAT VLNPNALETM STKANMVKEQ QQKSVKPLLN ISKSQNQGSF APQNCINGAT AHADCLDTSS STTSVCLSQS DAHLHQNTLS YNPQTMLLRD TSQEGEVRAY PRNNVSYGNN MDSQIEMPMN SDTLSAKGMM GLGKDFSNHL SSGGILASYE NPKDAQQELS SSMVSQPYRV PDMAFNSIDP TINHSSFINR NAWTPPSQFQ RLRTYTKVYK RGAVGRSIDI TRYSGYDELK QDLARRFGIE GQLEDRGRVG WKLVYVDHEN DVLLVGDDPW EEFINCVRCI KILSPQEVQQ MSMDGEFGNS VLPNQDCSSS GNGNA // ID A0A0B0NG64_GOSAR Unreviewed; 381 AA. AC A0A0B0NG64; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=B3 domain-containing REM16-like protein {ECO:0000313|EMBL:KHG11795.1}; GN ORFNames=F383_11151 {ECO:0000313|EMBL:KHG11795.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG11795.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN396484; KHG11795.1; -; Genomic_DNA. DR RefSeq; XP_017631487.1; XM_017775998.1. DR RefSeq; XP_017631693.1; XM_017776204.1. DR GeneID; 108474094; -. DR GeneID; 108474254; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 265 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 265 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43328 MW; D8F3ECA16E5E4416 CRC64; MGDSCKDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHNSSRCGL ESSPEKSTNN EIGTAPSRGP INTAPTNKKT RYTGSSTKSI YARHLGRKER CTFPGEVKFE TEFDGAIMDE GDFSPPPTCD NGPLTQFEKA NAVAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEHDV CVFEPSNIGG KSIILDIIII RVMDSAVQAP VPLTITHPAS C // ID A0A0B0NI34_GOSAR Unreviewed; 555 AA. AC A0A0B0NI34; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_03150 {ECO:0000313|EMBL:KHG12282.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG12282.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN397387; KHG12282.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 60797 MW; EF3D318A821B4108 CRC64; MPPSRSSPPE LRHVDPRIWR ACAGSSVQIP TVNSRVYYFP QGHLEQVCGS TPKLSSLVLS RPLINCVISD VHYLADPKTD EVFAKLLLTP VETSRLPNQF LNVNGEVEDS DRNKIVSFAK VLTPSDANNG GGFSVPRFCA DSVFPPLDYN ADPPVQTLSV TDVRGGVWEF RHIYRGTPRR HLLTTGWSKF VNQKKLIAGD SVVFMRDCNW KMFIGVRRAM KAGEGGGDSG RWREPSDGGA MKGEGRGRMT AEAVAEAAEK AVRGFPFEVV YYPRAGWTDF VARAVLVEAG ISTYWAAGTR VKMAVETEDS SRLAWFQGTV MSAAVPDSGP WIGSPWRMLQ VAWDEPEVLQ NARKVNPWQV QISSSSPLHS SFPSEKRLKF SQDSGLADAE GEIFPVSGLT NSTMGYLNPS LLNYNSFPAG MQGARQYHFH LQSLTNDVSE NTPVMSTDNF SGNYVVPKPT RISTELNIGS SQSENLSPDS QSSMVSFGTE LIEHGGCNSS KVGVGSFRLF GKIIALKEPV RSRFDDVGCM DDVGGKRHDE AVILGRQAGS QEVDT // ID A0A0B0NIG7_GOSAR Unreviewed; 345 AA. AC A0A0B0NIG7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG12447.1}; GN ORFNames=F383_19278 {ECO:0000313|EMBL:KHG12447.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG12447.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN397663; KHG12447.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 227 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 227 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 38111 MW; 47DBCD4D75AFEE6F CRC64; MAAPTVFIGT CFHCQSQSDA FFSGWQLRDG SFALLCHPCG SAFVEGRFCE TFHPEASGWR ECDSCNKGIH CGCIMAAHSY AILDFGGVKC LECCLNEALA LHRNSPTFSN PEEMQASDSH PKASDDTEET VTGVDPIASP DSVALNASPD KIGTPTSGAV PAAETEGESS VNSPAGTKKS HKKKGRKNRK DASKQHQIQA RYSPKTSPEE LREICRQAKS SLIPLFEKKL TASDVDTRNG RLVLPKRCAE AYFPKISGQQ GIFLTVQDTK GNDWEVFYRY WSNTNGKMYV LEGLKDYMIM MEWEAGDTVT FYKREEDEKL FMGFKKYQAP ESAQKGDAVA TKVNM // ID A0A0B0NLH2_GOSAR Unreviewed; 674 AA. AC A0A0B0NLH2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_05183 {ECO:0000313|EMBL:KHG15368.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG15368.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN403557; KHG15368.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 74946 MW; 248214D34069AFD3 CRC64; MITVMDCRKE VVKTSEKCLD PQLWHACAGN MVQMPAVNSK VFYFPQGHAE HANRNVDFGS LLIPSLILCR ISAIKFMADP ETDEVYAKIM LVPLRENDFG YEDGFDGNIG MENLEKPPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI HAKDVHGNIW KFRHIYRGTP RRHLLTTGWS NFVNHKKLVA GDSIVFLRAE NGDLCVGIRR VKRGIGSGHE YPSSWNLGDG SSGYSPLLRE GESKLMKNDS NGDLRGRIRP ENVIEAVSRA ANRQPFEVVY YPRASTPEFC VKASSVRAAM QTHWYPGMRF KMAFETEDSS RISWFMGTIS TAQVVDPIRW PNSPWRLLQV AWDEPDLLHD VKCVSPWLVE LVTNIPAIHL NHFSPPRKRM WLPQHPDLSL LGQIPMPSFS DSSFRSSSPA CCITNNIPGG IQGARHAPFG LSSSDVRSSK LQSGLFPHGF NQLGHTIPPM GHSSDYGNNR NISSSHTMGN LTQSLKESNE KKTPHILLFG QLIFCEQQVS QSCSDTIGNS SSNGNTEKTV ISSDASGSAL HQNAHENSSD EGSPWYKELP KTNMGLETGH SQVFTESENV GRTLDLSALR SYEELHGKLA NMFGVESSDM LRNMFYRDAA ASVKHTGDEP FSEFLKTARR LTVLTDSGSD NMGR // ID A0A0B0NML1_GOSAR Unreviewed; 578 AA. AC A0A0B0NML1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_03150 {ECO:0000313|EMBL:KHG12281.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG12281.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN397387; KHG12281.1; -; Genomic_DNA. DR RefSeq; XP_017603006.1; XM_017747517.1. DR GeneID; 108450073; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 63435 MW; 71A3F3F909C0421C CRC64; MPPSRSSPPE LRHVDPRIWR ACAGSSVQIP TVNSRVYYFP QGHLEQVCGS TPKLSSLVLS RPLINCVISD VHYLADPKTD EVFAKLLLTP VETSRLPNQF LNVNGEVEDS DRNKIVSFAK VLTPSDANNG GGFSVPRFCA DSVFPPLDYN ADPPVQTLSV TDVRGGVWEF RHIYRGTPRR HLLTTGWSKF VNQKKLIAGD SVVFMRDCNW KMFIGVRRAM KAGEGGGDSG RWREPSDGGA MKGEGRGRMT AEAVAEAAEK AVRGFPFEVV YYPRAGWTDF VARAVLVEAG ISTYWAAGTR VKMAVETEDS SRLAWFQGTV MSAAVPDSGP WIGSPWRMLQ VAWDEPEVLQ NARKVNPWQV QISSSSPLHS SFPSEKRLKF SQDSGLADAE GEIFPVSGLT NSTMGYLNPS LLNYNSFPAG MQGARQYHFH LQSLTNDVSE NTPVMSTDNF SGNYVVPKPT RISTELNIGS SQSENLSPDS QSSMVSFGTE LIEHGGCNSS KVGVGSFRLF GKIIALKEPV RSRFDDVGCM DDVGGKRHDE AVSEKNSLDL SLTYGCSKLL DRLDVQCQRA STFDGFSL // ID A0A0B0NMR1_GOSAR Unreviewed; 83 AA. AC A0A0B0NMR1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Auxin response factor 11 {ECO:0000313|EMBL:KHG12346.1}; GN ORFNames=F383_10700 {ECO:0000313|EMBL:KHG12346.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG12346.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN397521; KHG12346.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 70 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 70 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 83 AA; 9643 MW; 5AFC81098CFA3348 CRC64; MQPPSQELVM RDIHDNAWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SILFIRHAIV THCIALSCRL AFVWCNAVLM LKL // ID A0A0B0NN34_GOSAR Unreviewed; 942 AA. AC A0A0B0NN34; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription repressor VAL2-like protein {ECO:0000313|EMBL:KHG15963.1}; GN ORFNames=F383_08594 {ECO:0000313|EMBL:KHG15963.1}, GN F383_10498 {ECO:0000313|EMBL:KHG24383.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG15963.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|EMBL:KHG15963.1} RP NUCLEOTIDE SEQUENCE. RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A., RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J., RA Wilkins T.A.; RT "G. arboreum L. cv. AKA8401 A2 genome assembly version 1.0."; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN405017; KHG15963.1; -; Genomic_DNA. DR EMBL; KN428574; KHG24383.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 337 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 611 661 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 337 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 942 AA; 104258 MW; 889426EC360E8C56 CRC64; MASKSCMNVL CGASTSIEWR NGWTLRSGDF ASLCDKCGSA YEQSIFCDVF HSKDSGWRDC NSCGKPLHCG CIASRFLLEL LDGGGINCVS CAKKSGFNHA FTCRSSNIYD EAYVFQMIED EKPNEFCMVK ADADQLHSTS ADNQLSGASI ENLQPMQLSN NAESIGLRQL LQLHNDDSSG SLGQMKQEEF LPPREIGSTC LTSINQASNG SVQAVKPTTS KVNIFDSLPQ TNLSISLGGS LGNQNGFPSS VVDEKSKMSS VLQQASKSRH LLPKPPRSVL ATGLEMNAGM VPQIRVARPP AEGRGRNQLL PRYWPRITDQ ELQQISGDSN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRKDPEGKL VMGFRKATNT AVVQETLPPA IPNGTLSSES YFSGVFENLP IISGYSGLLQ SLKGSTDPHL NGLSKHSSLA GGDISGHKSD MHEDRIREDL LLPSMLTPER KRTRNIGSKS KRLLIDSQDA LELKLTWEEA QDLLHPPPST KPSIVTIEDH DFEEYDEPPV FGKRSIFAVR STGLELVSMI SRGQEQWAQC DNCSKWRRVP VDALLPPKWT CADNNWDQSR SSCSLPDELT PRELEILLRL NRDFKKRRII AFHRQTQEHE SSPGLNALAN AAILGDNVAD SGTTPVATTT KHPRHRPGCS CIVCIQPPSG KGKHKPTCTC NVCLTVKRRF KTLMMRKKKR QSEREAEIAL RNQQAWRTRE EAEVESSSKH VSSHHDPSEN EARSVNELES KNQSNNNKLV SKSVEANKGR IDLNCDPCRD DDSQFASSTR MSMMNLLHVA SLPLETYLKE NGLTSLVSDQ QAISTSHAPP QAGNTSEPHD DQCFHSATKE HETRDEVNIE TKTVRINNEI DP // ID A0A0B0NQE6_GOSAR Unreviewed; 251 AA. AC A0A0B0NQE6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing REM10-like protein {ECO:0000313|EMBL:KHG15080.1}; GN ORFNames=F383_00744 {ECO:0000313|EMBL:KHG15080.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG15080.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN402919; KHG15080.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 128 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 128 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 28340 MW; ED2F9B3C80E095AD CRC64; MSIALFSPTI PHFFQPLLPG FHLDYLKGQI NCESAVLRSY GRTWSVKIRD RRFEDGWQDF ARDHDLHVGD FLVFRYGGNM VFDVVVFDTS ACQRQYPLLA TQTQQTAKEI GKQHEKRTST SVTLESPHFV SNLTLESMKS FRLNIPRKFA RSNDLDRSCE TVLVDEQGRS WMASIRLKDS DGQVYIGRGW RNICIGNSLG LKDCVKLELI GNGITPIFKL YKVASNSDAK KLPNYFGSNA GCSGGSTIIL E // ID A0A0B0NV10_GOSAR Unreviewed; 796 AA. AC A0A0B0NV10; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_19897 {ECO:0000313|EMBL:KHG14911.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG14911.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN402587; KHG14911.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 661 743 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 796 AA; 88258 MW; D7265CDD54366F3D CRC64; MEIDLNHALN EVEKTVLCNG SCEKASACVY SSCTSNSGSP PCSSSIDLEL WHACAGPLTS LPKKGNVVVY FPQGHLEQLA LAFPFSPLDT FDLPSQIFCK VMNVQLLANK ENDEVYTQVT LLPQPELRGH NLGSKQLDEV EADEHADGSP SKPTSHMFCK TLTASDTSIH GGFSAPRRAA EDCFPRLDYK QTRPSQELVV KDLHGVEWRF RHIYRGQPRR HLLTTGWSVF VSQKNLIAGD AVLFLRGEDG ELRLGIRRAV RPRTGLPDSI IAQHNSYPKV LSAVANALST KSVFQVCYCP RASHAEFVIP FQKYIKSITN PMCTGARFRM KCEMDDLPER RCNGVVTGIG DSDPYKWPNS KWRCLMVRWD DDIASDHQER VSPWEIDPSV FPPPLIIPSP FKLKKLRTGL QTAALDTPVT GGVGYLDFEE STRSSKVLQG QENVGFISPV YGCGTVNHPL HFEMQSMAHQ SLASTGLGKS NISDFMRAHS SSHTGFAETN RFPKVLQGQE ICSLRSLTHK ADLNLGVWAK TNHGCNSFNM NQAPNTNFYP EGLRNIYFPY NEFYRAGQEP KMCSYASTLP RGNVLFNASS IKPGVSVDDI RKPNPPNDHK PMENIPSPGF GKKLRNQQDE CYKGNVSGCK LFGFSLTAES PTLNSQNSGK RSCTKVHKQG SLVGRAIDLS RLYGYKDLIT ELEHLFGMEG LLSAPDKGWR VLYTDRDNDV MVVGDDPWHE FCDVVSKIHI YTGEEVEKMT IGMGSDETQS CLEEAAVIME ASKSSSVGQP DSSPTVMRGM KISACF // ID A0A0B0NWI4_GOSAR Unreviewed; 432 AA. AC A0A0B0NWI4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_01519 {ECO:0000313|EMBL:KHG17185.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG17185.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN407703; KHG17185.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 48592 MW; 842D3D6081376D07 CRC64; MKAPPNGFLA NPAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFVPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDREALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELQARD LHENPWTFRH IYRGQPKRHL LTTGWSVFVS NKRLFAGDSV LFIRDEKSQF LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEECGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP FYICPPPFFR PRFPKQPGMP DNDNDVENAF KRAMPWLGDD FGMKDSPNSI FPVCSCSIWT LSFNGFFESI AQ // ID A0A0B0NXT5_GOSAR Unreviewed; 708 AA. AC A0A0B0NXT5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_02589 {ECO:0000313|EMBL:KHG16689.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG16689.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN406744; KHG16689.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 77927 MW; 5D5C10B340207583 CRC64; MITFMESKEK PKEMEKCLDS QLWHACAGGM VQMPSVNTKV FYFPQGHSEH ACGTVDFRNC PRIQAYILCR VAAVKFMADP ETDEVFAKIR LIPVNTNDPD FEDDGIGSIN GNETQEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCIGIR RAKRGIGGGP ESSTGWNATA GNCMIPYGGF SAFLREDEGK LMRNGSGNGV SSNGNLMGKR KVRPEQVIET ATLASNGQQF EVVYYPRAST PEFCVKASLV KAALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD PLHWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHS DFHLDGQLPM PTFSGNLLGA SNPFGCLPNT APAGMQGARH AHYGLSLSDL HLNKLQSGLF PASFPPLDYA PVPNRTSNGG PNIRKPSMSE NVSCVLTMSH PSQNSKKADG AKTPQLVLFG RPILTEQQIS LSCSGDTSSP VLTGNGSSEY LDKAANFSDG SGSALHQQGL PERASCEGLP WYKNNRQEAE PNLETGHCKV FMQSEDVGRT LNLSLLGSYD ELQRKLADMF GIENSETLSH LLYRDATGAV KQIGEEPFSD FMKTARRLTI LTDSSSDNVG EYRGRSKS // ID A0A0B0NZ89_GOSAR Unreviewed; 889 AA. AC A0A0B0NZ89; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG17967.1}; GN ORFNames=F383_05170 {ECO:0000313|EMBL:KHG17967.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG17967.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN409499; KHG17967.1; -; Genomic_DNA. DR RefSeq; XP_017649824.1; XM_017794335.1. DR GeneID; 108489654; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 342 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 569 619 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 342 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 889 AA; 97728 MW; 54AFB2C0A6CE7A80 CRC64; MTSTSVATSS SRICFNSVCN DLKSERPRKG WRLRTGELAE LCDRCASIYD EGRFCDTFHL NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS SLPERFKECS AKGWSQLTGS GPAPWRQAPG LFNSSTPQPE LHSRVPYEVD LSTGIDRLNV SERLSIPSLE KKKNEDFPER LMNGSLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK EDSSNPPFGL AVPYTSIDEA NGQMGVSGTP LRPNPQPSLA KQFHSNPHNG LDSSGETQMR NGRPRPDGRG RNQLFPRYWP RFTDQDLQQI SADSNCIITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN VVSIEGFEFE EYGDAPVLGK PTIFATDKSG ERIQWAQCED CFKWRRLPSD VLLPSKWTCS SNSWDPERSS CSATQEMTAE ELENLLPHCN PAASKKMKVA KQESENVDAL EGLDTLANLA ILGEGGILPA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC QTVKRRFRTL MLRREKKQSQ KEADATRKKQ QPSLPDKVVD DEPLPCTTSA GNSSPNQKKV VSENLDDDTN RLKSSSSPFK GQIDLNIQPE REEELSPGSD SGGTMRLLQD ASDKYHRQQS ILSSSGNSNI EVTQTQPGSG TELEKINSSI DLRASHRDAD MDHPAIFPIK TFAPTSATG // ID A0A0B0P0R2_GOSAR Unreviewed; 691 AA. AC A0A0B0P0R2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_08457 {ECO:0000313|EMBL:KHG18665.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG18665.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN411114; KHG18665.1; -; Genomic_DNA. DR RefSeq; XP_017630994.1; XM_017775505.1. DR GeneID; 108473764; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 577 669 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 76963 MW; F4763244EFADB44B CRC64; MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEI PRVHERVFYF PQGHMEQLEA STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE APKRTVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSTMPSS VISSQSMHLG VLATAAHAVT THTLFVVYYK PSTSQFIIGV NKYLEAINNG FSVGMRFKMR FEGEDSPERR FTGTIVGVGD ISPHWSESKW RSLKIQWDEP AAIQRPERVS PWEIEPFVDS ASANLQPTIM CKRPRPVDIP ASEITTGSAG SAFWCRESIQ SHELTPVGST LEVQSSENQV MCPMRQKEAD DCLINGNGGY KSRTPPENAW PPSPLVNVSL NLFPDSMENN YKTGALQTAL TGYAKSLMHD QVVKRKTETF TGCRLFGFNL TDSTSVAAPP DKEQMSTSID YNGVRGPIPA AFHVEQKPET SKEQKQVASE TSTQEMQAKQ GSATSMRSRT KVHMQGIAVG RAVDLTALKG YNDLINELEK MFEIKGELCR SGQWSIVFTD DEGDMMLVGD DPWVEFCKMV RKIFIYSSEE VKKISTRCKF PAASMECEGT VVSLDSEHRS V // ID A0A0B0P1A8_GOSAR Unreviewed; 835 AA. AC A0A0B0P1A8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG18682.1}; GN ORFNames=F383_26429 {ECO:0000313|EMBL:KHG18682.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG18682.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN411165; KHG18682.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 474 573 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 829 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 474 573 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 730 829 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 835 AA; 94148 MW; 881554ECCD8A1E11 CRC64; MDFPVLVKRE TMEESVLLNS LPPFVCLFVY GIPRNFVRKY GNQLSSPVKL EVPNGAIWQV ELTKSTDEKL HLQNGWREFA EHYLLEFGSF VVFRYEGNDR FHVLIFDKSA SEIDYPYTST EDDDGDGDDH ISVGVIAARP SVKTEVLSCP QKLTDTEKAQ AVQIASAFKS TEHPVFMVLM RPSSVCYKYR MVIPLDFALK FLPKHNCNLT LCNSAGKTWP VTFYRNTQSK KLSAQLYGGW QTFVKDNRIN VGDICVFELI RQPEILMKVQ IYPAAKNASN ACRSQADNSI ASQLRTGSLV SVTEPDCQQT RCPYSSSELK DSKLKTQKNI DFQNSTKELK GEFRCLAKND NGGVSGDWGC LKPDLVSKMQ PLTPTEKQRA TDIASWSSLR LVSGKSKEKS HLPCSLPQKK MRINSPNQHG QNSKLEVLSS GISSDAQRSV TTEALSCVQR LTAIEKTHAV QIASAFKSTE NPVFMVVMRP SYVLGKCRMF IPSNFTRKFL TMYKCNLTLC NSTGKTWHAK FFRYPENKKP NAHLYGGWCE FVEDNHLNVG DICVFELIKH PEILMKVQIY PVVKNASKAC GPQALGSIVS RVKTRSLVSD AKRSCQQSAR PPSSREFIDL TDSYIESLDD SPLDQKTKKK MTSPSFQPCK LMRTNPSESN QAKGIKLEKE KKSLNFQYLT KEVGGELKYS VRNDRERRSS ARRCPKPDPV YGKQRACVGA SAFRTSNPSF SVVIHPSYIG SSSSLHIPVE FVKRYLKKSG EMVLRVVDGR IWIVEYRRKA SNKGGKAKFG SRSWGQFAKD NQLEVGDVCV FELMNENGNL LEVAIHRKHL LIKID // ID A0A0B0P2J6_GOSAR Unreviewed; 300 AA. AC A0A0B0P2J6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHG17596.1}; GN ORFNames=F383_23705 {ECO:0000313|EMBL:KHG17596.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG17596.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN408616; KHG17596.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 192 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 192 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 34063 MW; D3D8F3B7B2C9E237 CRC64; MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF KDELSVAAAL TVPDGHVWRV GIRKGDNKSN ALLGSQYNHG KSYPFDELED DECMSSAMQH LFGGSKLNRC VNWSGEVNLN AAKSANNQPI RGSETPPPKK PGRKKQKFDP NDQDLSVGHE DDSEMRYRFY ESASARKRTV TAEERERAMN AAKAFEPSNP FCRVVLRPSY LYRGCIMYLP SCFAEHLSGV SGFIKLQLPD GKQWSVRCIY RGGKAKFSQG WYEFTVENNL GEGDVCVFEL LRSREFVLKV TVFRVMDGAG LMHRSQYNAN // ID A0A0B0P3Q9_GOSAR Unreviewed; 338 AA. AC A0A0B0P3Q9; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHG18759.1}; GN ORFNames=F383_04876 {ECO:0000313|EMBL:KHG18759.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG18759.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN411318; KHG18759.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 39438 MW; 064F37C661A04021 CRC64; MAATTQKCRV LEKNKYWKEF ESNRHQFFKI LRIPKTFTEN FREKLLGTIH LRGPSGFMWT VEVEKMFNHV VFQNGWPTFV EEHRLEKAYL LVFRYIGNSA FNVVIFDSSG CEREGSYFVR EHTNACSNDG CVLDKEDGED CEDIIDLEKP HIQKRKIKKG RGRPSSKAVD ADNRHQSKAR EDKQPRVGKS AVEREATEKK RPRVIKSAVE GEVSIDESDG APGCAMEDCV EQNLQGSYSL YFISKRREIT QEEKQRPRKL SRQYPSTRPS FTLVMKDSHV YKSFQVTIPK RWHQRYMFGD VRRTLLRVPP QNKVWDVRIR SSILGNSIHQ RMGQICLG // ID A0A0B0P5L7_GOSAR Unreviewed; 661 AA. AC A0A0B0P5L7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_24092 {ECO:0000313|EMBL:KHG20295.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG20295.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN415354; KHG20295.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 638 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 74013 MW; 1DCE54A2C0AE4C52 CRC64; MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPKREV HSFCKILTAS DSSTHGGFSV LRKHATECLP PLDTNQATPT QELTAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQS MHLGVLATAA HAVTTQTLFV VYYKPRTSQF IIGVSKYLEA INNRFSVGMR FKMGFEGEDS PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIKP FSASASINLI QPAVKSKRPR PVYIPASETT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM RQNEADAGYN MRTLLENAWP PSSLVNVSLN FFRNPADASP VELRTSKDVM RDQVEKGKKL EISTGCRLFG FNLTNSNSAV SGTVIAPSHI DENPETFQSP KQQKQNASET STKEIKAKHG TTSSTRTRTK VQMQGIAVGR AIDLTLLKGY DDLINELEKM FDIEGELRHR TKWSVVFTDN ESDMMLVGDD PWVEFCKMVR KIFIYSVDEV KKINARCKFQ ASSLEGEGTV VSLGSEHRSE T // ID A0A0B0PB32_GOSAR Unreviewed; 798 AA. AC A0A0B0PB32; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHG22012.1}; GN ORFNames=F383_28292 {ECO:0000313|EMBL:KHG22012.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG22012.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN420341; KHG22012.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 392 490 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 644 742 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 392 490 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 644 742 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 798 AA; 88712 MW; FF2F737B699E5967 CRC64; MIEHTLQQAS TMFTSKTPHF FKVILQETLR DGILGIPRKF VRKYGNQLSS PVKLEVPSGA IWQVELAKTD ERVRLQNGWR EFAEHYSLEL GSFVVFRYEG NDHFHVLIFD KSASETEYPH TSTEGNDGDD HVSVEICDDV SASRKNKEKP DLPCSLPQKK ISTDSKLKNS SSHISLDEPC SIKNKLRNLK KNENSSSSTG RVDAQRSIGN TDGTRSLVSD TNSSSQERCP SGSTELKDSK FQKRKKRVDS QYSKKDLRDE FICSAKHDNG GVSGACGCLK PDLIGRTQPL APTEKQRAAD IVSWSSSRLV SRKSKEKSHL PCPLPQKKMR IDSSNQHGQN SKLKVLSSGT SPDAQRTVKT KAFSCVQRLA AIEKAHAVQI ASAFESTENP IFMIVMQPSY VRGTCRMFIP SDFARKFLTV HKSNLTLCNS TGKTWHAKLY HPANKKPNAH LCGGWREFVE DNHLNVGDIC VFELIKHPEI LMKVQIYPVV KNASKASGQQ ALGSIVSRVK TRSLVSDAEP NCQQSPSSSS ESKDLTDSHI KTLHDSPLDQ KTKKKLTRSS AQPCKMTRTS LSGSIQAKGI KHEKGKSLNF QYSTEELGGG LKNSAKGDSG RKSGARRCLK PDPVYQKQRA CTGGGAFRTS NPSFSVVIHP SHIGSCSTVH IPEEFGKRYL KKNGEMMLRV ADGRSWNVEY ERIGTNKGRK AGFGGKSWGQ FAMDNELEVG DLLEFAYNVL LVGYELQFGN GSELGIFDKM ERKLGGVWKL YRDGNSSLLL LLQIRIRWIS ETPSSSNFSH RKMGLSTP // ID A0A0B0PG11_GOSAR Unreviewed; 393 AA. AC A0A0B0PG11; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor LEC2-like protein {ECO:0000313|EMBL:KHG23900.1}; GN ORFNames=F383_04897 {ECO:0000313|EMBL:KHG23900.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG23900.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN426731; KHG23900.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 393 AA; 44890 MW; F10EDED538116DE5 CRC64; MENSYIPLFS TTATSSTTPI TTTTTTHSPS NMDWSQNSDF SMFEPMNSQF QHPSQLLSPN QSLQFPYNHS IEQAPVYPFF TGQKGFEFGV CKEQERRTND PYRTRLARIN RKLARQRSLQ RNANSGASTQ VDARRLINSG ADTDTNKNKD TKKDLYRFCT ADNKRLRVLL KKELKNSDVG SLGRIVLPKR DAEVNLPPLS DKEGIQVMIK DVYSNHMWTL KYKFWSNNKS RMYVLENTGD FVKQNGLGTG DSLTLYEDES KNLYFSITKV ATVAVESSSN QQYYHNVNNN GEEGNDNSNN MYLPFTSQSK DDEAASLELF MEQQEPNDFI MTLPMDSTYG SHTMFPEETR HLPNNVDQMP SLSRSVDDIS INFDDCYGGL DMLPEANQYN FSF // ID A0A0B0PI96_GOSAR Unreviewed; 917 AA. AC A0A0B0PI96; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=B3 domain-containing transcription repressor VAL2-like protein {ECO:0000313|EMBL:KHG24632.1}; GN ORFNames=F383_08328 {ECO:0000313|EMBL:KHG24632.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG24632.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN429420; KHG24632.1; -; Genomic_DNA. DR RefSeq; XP_017648954.1; XM_017793465.1. DR RefSeq; XP_017648955.1; XM_017793466.1. DR GeneID; 108489153; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 917 AA; 100422 MW; EFB1068A82BD0A56 CRC64; MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC SSCGKRLHCG CIVSRCLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKTNAGQL HSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSFVQMK QEEVLPPAID IGSTCLSNTN QASNGSVQAG KPAICKANIS ETLPQTNLSI SLGSSLGNQN VFPGSVVDEK GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CMQSMQLQAG DTVTFSRMDP EGKLVMGFRK ATNNAAVQET LPSAIPNGTL SSESLFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH LSSTGGDISW NKSGKHEDRI REGLLLPSML TPERKRTRNI GSKSKRLLID SQDALELKLT WEEAQDLLRP PPSIKPSVVT IEDHDFEEYD EPPVFGKRSI FAVRSTGGQE QWAQCDSCSK WRRLPVDVLL PPKWTCADNN WDQSRSSCSA PEELTPRELE NLLRLNRDFK KRRIAAFTRP TQEHESSSGL DALANAAILG DNADNSGTTS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCVVCMT VKRRFKTLTM RKKKRQSERE AEIAQRNQQA WGPSEEAEVD SSSKHVSSLH LNPFENEARS ANELESKSQS STKLVEANKG QIDLNCDPDR EDDSQLGPNR TSMTSLVRVA SLPLETYLKE NGLTSLVYEQ QGNSASNAPP QSMSGTVEGE TQENSSFPSA TEEPESKDEE NGETGSDRVD DNNDKDP // ID A0A0B0PIH2_GOSAR Unreviewed; 226 AA. AC A0A0B0PIH2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor FUS3-like protein {ECO:0000313|EMBL:KHG24234.1}; GN ORFNames=F383_30946 {ECO:0000313|EMBL:KHG24234.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG24234.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN428059; KHG24234.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 226 AA; 26151 MW; B77B717B5C95346B CRC64; MSKDPLEVCP AEFISRLYFS RFPTQVIDPK RLRFLFQKEL KNSDVSSLRR MILPKRAAEA HLPVLESKEG ILISMDDLDG LHVWSFKYRF WPNNNSRMYV LENTGEFVST HGLQLGDFIM VYQDSLNQNY VIQAKKASDE DVYSDIARNG VNDLFLHDYE ATKSSNYYYP MMEDNGMSFI YDTTLSFSND CPLDFLGGSM TNYSRMGSLE SFGSVENLSL DEFYQL // ID A0A0B0PK95_GOSAR Unreviewed; 738 AA. AC A0A0B0PK95; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_05647 {ECO:0000313|EMBL:KHG24849.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG24849.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN430283; KHG24849.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 738 AA; 80684 MW; DE20E2B48D661EDF CRC64; MGGLIDLNTT EDEETPSYGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR GSVVVYFPQG HLEQVSDFSG VAPAYDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE QIEQKLKEGN IEVDGEEDAE ADIKSTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYNQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG ENGELRLGIR RAAHIKNGTS FHSLCTQQLN RSNFADVVHA ISMKSVFSIY YNPRASSSEF IIPVHKFWKS LDHSFSVGMR FKMRFESEDA AEGRYTGVVT GISEMDPVRW SGSKWRCLLV RWDDIETNRH IRVSPWEIEP SSSISSSNSL LSPGSKRNRV GLPSGKPEFM VPEGIGASDF GESLRFQKVL QGQEILGFNT HNDGANSQIM HRSDISRRFP CSNGSGIAAI RNIGRDTLVN PDISYKGVGF EESFRFQKVL QGQETFVSPP CRRGPTVDDT RESDSPGAPD VGQLSGTRSG WSSLMQSYNT HSRIGPSAQV SSPSSVLKFQ HASNPFANVN PIHNLNSQEK EQRVHKSSSF HAPETYGDGI PSSTGGHGSR RRYLGSLHSF GPSTDTVQLG DSQPLSAQPT FRTSQELAAS CKSSCRLFGF SLTEGGHDAA KEDNMVQATS SLGAGAFLPR IGEQFNTQPP AVTNTVGSSY TKVSNLYAVR DIVYDIAL // ID A0A0B0PKQ8_GOSAR Unreviewed; 685 AA. AC A0A0B0PKQ8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_07659 {ECO:0000313|EMBL:KHG25590.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG25590.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN432980; KHG25590.1; -; Genomic_DNA. DR RefSeq; XP_017649647.1; XM_017794158.1. DR GeneID; 108489534; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 599 682 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 75643 MW; 07CC23228B0C984F CRC64; MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LIPLRENSFG VEDDGFDGNV GVENPEKSAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSVSG TSGSQVGSYS PFLREGESKL MRKDCNGDPR GRIRADSVIE AASHAASGQP FEVVYYPRTS TPEFCVKASS VRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGTISTAQVV DPIRWPNSPW RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDISFLNQIP MPSFSGNSFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR TAPPTRLSGN NFCSDNANNT NISSLLTIGN PTQSFKQSND SKTPHIVLFG QLIFCEQRAS QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKED QKTDLGLETG HCKVFMESEN VGRTLDLSVL GSYEELYGKL ANMFGIESSE MLSSVLYRDA AGSVKHTGDE PFSEFMKTAR RLTILMDSSS DNLER // ID A0A0B0PQC2_GOSAR Unreviewed; 663 AA. AC A0A0B0PQC2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_15319 {ECO:0000313|EMBL:KHG28668.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG28668.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN445954; KHG28668.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 663 AA; 72612 MW; 6EE4FE198AA58207 CRC64; MGCLIDLNTT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEQTEQNL QEVDGDDEDA EADMKLATPH MFCKTLTASD TSTHGGFSVP RRAAEDCFAP LDYDQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI RRAAQIKNGA SFLSLCSKQL NRSTFADAVH AISMKSVFSI YYNPRASSSE FIVPVCKFRK SLDRSFSVGM RFKMRFETEN APERRSSGLI TGTSDLDPVR WPGSKWKCLS VRWDDIDANK HGRVSPWEIE LSGSISSSNC LLSPCSKRNR VGLPSGKPEF MVPDGIGAPD FGEPLRFQKV LQGQEILGFS TLYNGADSHN MHRSEIRRCF PGSNGSGIAT IGNVGRDPPL NPVISYKGVG FGESFGFHKV LQGQEIFLSS LYRKGSTMEE TRGNDSAGLT NVGQMSGTRS GWSSSMQGYN THSPVQPSVQ VSSPSSVLMF QQASNPVPNF NSTRNFNQEM ERGVSSFRVP ETYGAKLLSS SISEHDSQPL AAQPSFGTNQ ELASCKNSCR LFGFSLTEGD LDTTKEDSVG TLQHCLKRYA ADV // ID A0A0B0PU79_GOSAR Unreviewed; 414 AA. AC A0A0B0PU79; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHG28570.1}; GN ORFNames=F383_12242 {ECO:0000313|EMBL:KHG28570.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG28570.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN445509; KHG28570.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 414 AA; 47272 MW; E783F835449E735E CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL NDSREPGHDK HLKDVEDGAF AQIMRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ KNDVDDLRVT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDIDEYK SLGKFIVKEE LPAMNSPRSD HKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK GIFLHIPRCF ALRYLNGVDG IVTLQVSEGK KWPVRCIYGQ SSWKFSKGWA EFVLDNNLDE GDVCVFELIS TKEIVLKVTI FRVLEDGVDH TCLCISMLVF VALGCFMLQC EKPF // ID A0A0B0PUT9_GOSAR Unreviewed; 892 AA. AC A0A0B0PUT9; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_12656 {ECO:0000313|EMBL:KHG28199.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG28199.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN444021; KHG28199.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 759 843 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 892 AA; 98271 MW; 37E35A3FA596C69E CRC64; MRLSSAGFSP QATEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE EVDVHVPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLNPQEQKE AYLPAELGTP SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHLGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LTKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVGWDE STAGERQPRV SLWEIEPLTT FPMYPSPFPL RLKRPWPAGL PSFHGIKDDG LGMNSPLMWL QGDAGRGMPS LNFPGIGVKP WMQPRLDAAS MLGLQNDMHQ AMAAAALQDM RAVDPSKSAT TTLLQFQQPQ NLSCRPAALM HSQMLQQSQP QAFLQGVEDN QHQSETQAQT QPPLVQQQLQ QQNSFNNHQH QQQLQHPLSQ QHQQLVDHQH ISTGVSAMSQ YAPASQSRSS PFQAIPSLCQ QQSFSDSNGH TVTSPIVSPL HSLLGSFPQD EPSGLLNLPR SNPVITSAAW PSKRAAVEVL SSGSPQCVLP QVEQLGPTQT NISHNSISLP PFPGRECLID QAAGTDPQSH LLFGVNIETS SLLLQNGMSS LRGVGSESDS TTIPFSSNYA STAGTDFSVN PAMTPSSCID ELGFLQSPEN VGQENPQTRT FVKVYKSGSF GRSLDISKFS SYNELRSELA RMFGLEGQLE DPLRSGWQLV FVDRENDVLL LGDDPWPEFV NSVWCIKILS PQEVQQMGKR GLELLNSVPV QRLSNGSCDD YASQQDSRNL SSGIASVGSL DY // ID A0A0B0PUY5_GOSAR Unreviewed; 685 AA. AC A0A0B0PUY5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_15319 {ECO:0000313|EMBL:KHG28667.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG28667.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN445954; KHG28667.1; -; Genomic_DNA. DR RefSeq; XP_017646680.1; XM_017791191.1. DR GeneID; 108486999; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 74942 MW; AAA98E87815CDE66 CRC64; MGCLIDLNTT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEQTEQNL QEVDGDDEDA EADMKLATPH MFCKTLTASD TSTHGGFSVP RRAAEDCFAP LDYDQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI RRAAQIKNGA SFLSLCSKQL NRSTFADAVH AISMKSVFSI YYNPRASSSE FIVPVCKFRK SLDRSFSVGM RFKMRFETEN APERRSSGLI TGTSDLDPVR WPGSKWKCLS VRWDDIDANK HGRVSPWEIE LSGSISSSNC LLSPCSKRNR VGLPSGKPEF MVPDGIGAPD FGEPLRFQKV LQGQEILGFS TLYNGADSHN MHRSEIRRCF PGSNGSGIAT IGNVGRDPPL NPVISYKGVG FGESFGFHKV LQGQEIFLSS LYRKGSTMEE TRGNDSAGLT NVGQMSGTRS GWSSSMQGYN THSPVQPSVQ VSSPSSVLMF QQASNPVPNF NSTRNFNQEM ERGVSSFRVP ETYGAKLLSS SISEHDSQPL AAQPSFGTNQ ELASCKNSCR LFGFSLTEGD LDTTKEDSVV HATLSLGRGS LLPCIGENFH PNPPAVTSTV WKQLY // ID A0A0B0PVV1_GOSAR Unreviewed; 391 AA. AC A0A0B0PVV1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHG28569.1}; GN ORFNames=F383_12242 {ECO:0000313|EMBL:KHG28569.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG28569.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN445509; KHG28569.1; -; Genomic_DNA. DR RefSeq; XP_017616948.1; XM_017761459.1. DR GeneID; 108461581; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44625 MW; 1E361ADCA3FD0116 CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL NDSREPGHDK HLKDVEDGAF AQIMRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ KNDVDDLRVT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDIDEYK SLGKFIVKEE LPAMNSPRSD HKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK GIFLHIPRCF ALRYLNGVDG IVTLQVSEGK KWPVRCIYGQ SSWKFSKGWA EFVLDNNLDE GDVCVFELIS TKEIVLKVTI FRVLEDGVAV N // ID A0A0B0PWE1_GOSAR Unreviewed; 932 AA. AC A0A0B0PWE1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_07154 {ECO:0000313|EMBL:KHG29290.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG29290.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN448941; KHG29290.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 843 927 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 932 AA; 103792 MW; 22948C8C2C8C1478 CRC64; MSEETKLDMK LSASGQGQQA HEGENKCLNL ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAATTNKEVD THIPNYPDLP PQLICQLQNV TMHADVETDE VYAQMSLQPL TPEEQKGAFL PMELGIPSKQ PTNYFYKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFSQQP PAQELIARDL HDIEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSC FTVFYNPRAS PSDFIIPLSK YVKAVFHTRV SVGMRFRMLF ETEESSVRSC HVQGFLGCAE VVLQHRPVVL QHRQQFWPEY SSLAPDLSYK TMYMGTITGI SSLDPVRWPN SHWRSVKLII GLELDYHVLS SSTAQVVPPT STAIHQIEAA NLIHDSGTIG GGGDWGNSWQ QWVGWDESTT GERQPRVSLW EIEPLTTFPM YPSLFPLRLK RPWHPGSSSL FGIGKDDVLP NLELHGLGYE VGYGNVSDII NNRDDISNGL TWLRGGSGEQ GLQSLNLQSF CSYPWMQQKL DLSFPGNDYN LQYQHMLANG LQNLGSGDPP RQQLQQSFQY VQQPGSHNLL LQQQQQQQQQ QQSVSQLVPH NIVQAQQSII RIESFLPVPG REQVGNQSEE QAQQQHNMTQ SDQLQQRRQL NVPSSFLKPD FIDSGSGPPV LDMLGSLCPE SSANLLNFST TGQSMLADQL PQLSWAPKYA HLNVNTFAGS TSVPQVSPGK DATVELDIGT SDAQNSTFFG VNDDSFGLLL PTSMRGFTTS SSEADMPSIP LGDPSFQNPL YGCMQYSSEL QSTGQVDPPT SSRTFIKVYK SGSVGRSLDI SRFSSYHELR EELAQMFGIE GKLEDPLRSG WQLVFVDREN DILLLGDDPW EAFVNNVWYI KILSPEDVQK MG // ID A0A0B0PYM7_GOSAR Unreviewed; 236 AA. AC A0A0B0PYM7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHG28571.1}; GN ORFNames=F383_12243 {ECO:0000313|EMBL:KHG28571.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG28571.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN445509; KHG28571.1; -; Genomic_DNA. DR RefSeq; XP_017619827.1; XM_017764338.1. DR GeneID; 108464189; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 26906 MW; 37E677D7D2203CFD CRC64; MKEIPRSVKQ YPFEQLQDNE CISPALQNMF GGSKLSNCIN WGGDVNRQNP KAVNNQPIRG SGAMKPEPKK RGRKRKFDPN VQDSSAGRED DADMRLRCYE SASARKRTVT AEERERAINA AKAFEPINPF CRVVLRPSYL YRGCIMYLPS CFAEKHLSGV SDSIKLQLPD GRQWSVRCRY KGGKAKFSRG WYEFTLENNL GEGDVCVFEL LRSREIVLKV TVFRVMESGG LMHRSQ // ID A0A0B0PZA2_GOSAR Unreviewed; 372 AA. AC A0A0B0PZA2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHG30232.1}; GN ORFNames=F383_36526 {ECO:0000313|EMBL:KHG30232.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG30232.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN455198; KHG30232.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 71 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 71 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 41628 MW; C4878BAD02EF44D6 CRC64; MTRKPKRNPS FFKILIGNFD KKLRIPPAFV KHVFKGNVPT MLTLYSDSGN SWRVRIKVEQ GSYFFNNGWS NSTFDVFIYN RTACAKNIIL AAKKRKGRSP GVSRQIEQTP SHKCTSTSKK PRTVPRVQEV EFVSGVTPKN VSYVMVVKGY NKYYAGIPIC FTEEAGLGKV SMVMIRGPKG GMWPMMTTFS SKQVLLSVGW SKFLHENEIV VNKDGTGNTG SLAGKRPRDR PREQTELPPS TKYASSSKRT KGVSELLLEQ ASFVVVLKKY HQYSVSVPAS FAKETSLAEE PSTVIKDSEG RKWEINILVD AKSNVRLGAG WSQFVQENKL EAGDTISFQH IPNTGNVIYF KIISNARAAN YGDGRNMRKN VC // ID A0A0B0Q080_GOSAR Unreviewed; 677 AA. AC A0A0B0Q080; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_09631 {ECO:0000313|EMBL:KHG29156.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG29156.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN448220; KHG29156.1; -; Genomic_DNA. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 677 AA; 76088 MW; 5FD73943E04D1838 CRC64; MDGEGHGSKA KFPFHSTRGE NNDLYSKLWH ACAGPSVYVP RSGDKVLYFP QGHMEQVEAY MSEDGTMEMP IYNLPWKILC RVLHVELKVE PDTDEIFAEI ILLPEAEQDE QSMEHRYYRA SPRENYSRYF SKKLTPSDIK THGGFSIPKR HANDGCLPLL DMSQEIPQQE LLATDLHGHP WYFRHVFRGY PKRNLLTTGW STFVTSKKLA AGDSFIFLRG ENGEFGVGVR QSMTKLLNSP SPSIISAHSV RHGILASAFH AFATRSIFNV YYRPWTRSSE FITPLDQYIK AVQFDYCFGT RCRMRVEGGE SGEQRSLGTI IGTEDLDPIR WQNSKWRCVK VKWDPAASSV LLPERVCPWS IDLTEFTKKK KTSTLHHQKR ARPNNASSPE FSSLLMDGML HGTAKNQSQS SSGVLQGQED SDTCVNQSSV LRQSLPHLLP QDPGCASMQQ QMHKQLQIQI PTCDTFYQCS SSTAHFSGRK VPGLCNGLSA FSSNRVHDDA RATKNGTSLS RPNGSHRCMV FGVNLFNGSP ELPSPQVLTS SEVQRLCSTP LTSQSSVSIA SKGISSKQCN NCCSIGDQTC TKVLKYGTNL GRSVDLYRFN GYKGLILELD HMFDFNGKLI DGSSGWHITY TDEDGDMMLI GDPYPWQKFQ HEVRRMVIHP KEEINRLNPS SPSSASY // ID A0A0B0Q0F7_GOSAR Unreviewed; 950 AA. AC A0A0B0Q0F7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=F383_03094 {ECO:0000313|EMBL:KHG30790.1}; OS Gossypium arboreum (Tree cotton) (Gossypium nanking). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG30790.1, ECO:0000313|Proteomes:UP000032142}; RN [1] {ECO:0000313|Proteomes:UP000032142} RP NUCLEOTIDE SEQUENCE. RA Magalhaes I.L.F., Oliveira U., Santos F.R., Vidigal T.H.D.A., RA Brescovit A.D., Santos A.J.; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN460098; KHG30790.1; -; Genomic_DNA. DR RefSeq; XP_017619239.1; XM_017763750.1. DR GeneID; 108463820; -. DR Proteomes; UP000032142; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032142}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032142}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 833 917 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 950 AA; 104464 MW; 8D00ECD76DC8EA0E CRC64; MGSVVEEKIK QGGLVNVGAQ STLLEEMKLL KEMQDQSGSS FVGTRKAINS ELWHACAGPL VSLPQVGSLV YYFPQGHSEQ VAVSTKRMAT SQIPNYPNLP SQLMCQVHNV TLHADRDTDE IYAQMSLQPV NSEKDVFPIP DFGLKLSKHP NEFFCKTLTA SDTSTHGGFS VPRRAAEKLF PSLDYSMQPP TQELVVRDLH DNTWTFRHIY RGQPKRHLLT TGWSLFVGSK RLRAGDSVLF IRDEKSQLLV GVRRANRQQT TLPSSVLSAD SMHIGVLAAA AHAAANRSPF TIFYNPRACP SEFVIPLPRY RKSVYGSQVS VGMRFGMMFE TEESGKRRYM GTIVGISDLD PLRWPGSKWR NLQVEWDEPG CNDKQNRVSA WEIETPESLF IFPSLTSSLK RPLYPGFSGA ESEWGSLMKR PLLQFPENGN GNLPYSMSNL CSEQLMKMML KPQLVNHPGI FASPLQQIAD VKIPPLEEMK NLQSKSHPKP QVIQSENMLI ENQNLSHPVP DHPDPITSNM SKINANGNPH PANILTQAGT GSSNEKLKLE SKHSAEQLTS TSECNEEKLV ASTVNTTMSN QLSFPTQPQI PLHVQNNPWS IQSQLDSSVL QAHQMLVSQA DISTLNSFLP FSDTDEWTSN LSSCQPLSGA YKSPGPIPMV GLQDSSAVFP VETDDSLTTV GEEIWDPKLN SCRVSSQADQ LASFTQQDPC SLNSGGVRDL SDDSNNQSGI YSSCLNIDVS NGCSTVIDPF VSSAILDEFC SLKDADFQNP SDCLVGNFGS CQDVQSQITS ASLADSQAFS RQDLPDSSGG NIDFDDSGLL QNNSWKQTAP RVRTYTKVQK AGSVGRSIDV TSFKNYDELI SAIECMFGLK GLLDDPRGSG WKLVYVDYEN DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAATVQGING SNSDGSNANA // ID A0A0B2NPL0_GLYSO Unreviewed; 435 AA. AC A0A0B2NPL0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHM99010.1}; GN ORFNames=glysoja_024310 {ECO:0000313|EMBL:KHM99010.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHM99010.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHM99010.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHM99010.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN672145; KHM99010.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 435 AA; 49453 MW; E7A14F79AE7A1AA7 CRC64; MPRPCFHKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWRI GLKKADNRIL FVDGWQDFVQ HYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAIRN RNEGSCLANY HHIFDEMEDV DSLDLSDLSP QYLTPGSLQN KGCVGSVDQL TPGKSHTPAL QNLFNGGSKL NRINWGDGGS AFSSKNANSQ GNQSTRDIGV QFNANEFKRS TEELKLRYSN EETVNKTAKK KRKSEPYGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKT FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTVENNLGEG DVCVFELLRT KEVVLQVTVF RVTEDAGLLN QPPMMQQQHI PNMSHTKLLN PHLQHRVSTT KLIRN // ID A0A0B2NVE6_GLYSO Unreviewed; 338 AA. AC A0A0B2NVE6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor FUS3 {ECO:0000313|EMBL:KHM99228.1}; GN ORFNames=glysoja_034753 {ECO:0000313|EMBL:KHM99228.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHM99228.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHM99228.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHM99228.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN671911; KHM99228.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38060 MW; 93F7564E0955043D CRC64; MMMDPRQREK LLHKTEACAF VAGVVPELSL VTVPGNNNNT NNVNNNNNNV SHSQSHRSGR IHENHHHHHL GLVAAVSTTF GTVHRKKRMA RQRRSTNPTL LMNPLINNNN NKSGSSLPSP STASSSHVPL SSSTLPPARE IDQRRLRFLF QKELKNSDVS SLRRMILPKK AAEAFLPALE SKEGIVISMD DIDGLHVWSF KYRFWPNNNS RMYVLENTGD FVNTHGLRFG DSILVYQDSE NNNYVIQAKK ASDQDEFMEE TSDTINDIFL NDYEVNKPGC FNVTYPAVND TGMSFIYETT FSNDSPLDFL GGSMTNFSRI GPVETFGSVE NLSLDDFY // ID A0A0B2NW46_GLYSO Unreviewed; 128 AA. AC A0A0B2NW46; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 12-APR-2017, entry version 12. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHM99467.1}; GN ORFNames=glysoja_006310 {ECO:0000313|EMBL:KHM99467.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHM99467.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHM99467.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHM99467.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN671598; KHM99467.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 106 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 128 AA; 15215 MW; 54BAEEC32AF4C660 CRC64; MLYDDPWKIK KLLTKSDLGN LSRLLLPKEL IEDLVLPVLS VESQREAKTQ KGTKITIWDV DTQSMHYLVF KFWASSRSYV FIDNWTKEFV NRRSLQINDE IGFHWNSYKN QFDFPCPSKL KSKPHHLL // ID A0A0B2NWL6_GLYSO Unreviewed; 973 AA. AC A0A0B2NWL6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=glysoja_017554 {ECO:0000313|EMBL:KHM99856.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHM99856.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHM99856.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHM99856.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN671472; KHM99856.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KHM99856.1}. SQ SEQUENCE 973 AA; 106784 MW; 652D3E6006F97B34 CRC64; INAELWQACA GPLLNLPSPG THVVYFPQGH SEQADPDTDE VYAQMTLQPV PSFDTDALLR SDIFLRSSKP QPEFFCKQLT ASDTSTHGGF SVPRRAAEKI FPPLDYSVQP PAQELVARDL HDNVWRFRHI YRGQPKRHLL TTGWSLFIGG KRLLAGDSVL FVRDEKQQLL LGIRRANRQP SNLSSSVLSS DSMHIGVLAA AAQAVANNSP FTVFYNPRAS PSEFVIPLAK YSKAVYSHHI SPGMRFRMMF ETEDSGTRRY MGTIIGVSDL DSVRWKNSLW RNLQVGWDES TAEERQSRVS VWEIEPVTTP YFICPPPFFR SKIPRLLGMP DDEPDFNNLF KSTVPWLGDD MCVKGPQALP GLSLVQWMNI QQNPALASSL QPNCGPSMSG LVLQNLPGAD IANPLGFSTS QISQSNNVSV DAQNILQTSQ QLDHIQKPPC PSSALGAVTQ PLQQLGDITQ QPRNLTNQTL PHDQAHTQLL NPQRVVQTNN IHQQQQSSIQ KQQLLRSLSQ NRAQKHQQTT LGLNERQIVF QSPMPDHFNQ QLQMSDNQVR FQLLQKLQQQ QQTLLAQQSA LQQPALIQIQ DQQRQLLDVA NNSSSPIPGQ VLENLPTLQN SLPEANSITH QITMPSSQKN FHYSHLSQQP ALLSEMSGHV GLPPTVTTNP LSASGGSILT GVGQSVITDD VPSCSTSPST NNRASVLPPV VSSQIHRSTT IGDDMAQSAV TISGASTLET MSSNANIVQP KYEVKASLNI SKNQNQGNVA PQTYLNGVVQ TDYLDSSSST TSLYHFRSDT HMHQNTNPFS YNPQLVYCRD NSQNVEVQAD ARNNVLIGNN VNGQMGMPSN LDSLLTKGTV GLGKELSNKF ASGGLLRDLE NNKGVPPEIS SSMVSQTFEV PDMSFNSIDS TIDGSSFLNR GPWDLPPPPP PPPPPHTPRE FVNCVRCIKI LSPQEVQQMS LDGDFGNGGL PYPAGSSSDG GNA // ID A0A0B2NXI1_GLYSO Unreviewed; 286 AA. AC A0A0B2NXI1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN01836.1}; GN ORFNames=glysoja_028508 {ECO:0000313|EMBL:KHN01836.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN01836.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN01836.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN01836.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN670767; KHN01836.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 286 AA; 32957 MW; 3559D54DEA590EDA CRC64; MTSKLNHRDD GSNGDSASKP IHFLRIMHPD NLLQGKLRLP AEFVNKYGKH LSNTMFLKLP NGAEWRVNLE KRDGRVWFQE GWKKFVEHHS LAHGHLLVFK YDGTFHFHVL IFDPSANEID YPVNKANHKR VRISSEEIQP PTTCKTSGNK RSNSNLQDNA FHQKVRDHKG SRYESPSEGK RNMEAAGSIS FTVRMKSSSK QHMYLPKDSL KGYIKGGEQY VKLLVGERSW RVKLVHYKNR SSCFFSANWP AFARENDLKE GDACWFQLLN SSDDIVMNVT ISREGH // ID A0A0B2NXS0_GLYSO Unreviewed; 175 AA. AC A0A0B2NXS0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN01835.1}; GN ORFNames=glysoja_028507 {ECO:0000313|EMBL:KHN01835.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN01835.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN01835.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN01835.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN670767; KHN01835.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 20305 MW; 8DE0B1B0327A4D51 CRC64; MTSQLDDGDG SYGYSATKPI HFFRIMLHEN LLQGNLRLPE KFVRKYGNHL SNSMLLKLPN GVEWKVNLEK RDGSVWFQEG WKDFAEYYSL ANGHLLGFRY DGTSHFHVFI CDMSTMEIEY PVNKANHKRP SINSEESQPH KTQKTDENMN KSNSNLQDTD IHKEARDHKG KILDS // ID A0A0B2NZG5_GLYSO Unreviewed; 570 AA. AC A0A0B2NZG5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_000510 {ECO:0000313|EMBL:KHN00842.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN00842.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN00842.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN00842.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN671115; KHN00842.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 570 AA; 62690 MW; E2DB6C679B451B38 CRC64; MVQMPPLNTK VFYFPQGHAE HAHGKRVDFA KNQTRVPPLI PCRLSAMKYM ADPDTDEVYV KMRLTPLREH ELLDSQDDCF LGNSAGGGGV DQGQEKPPTS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSAEPPVQT IIAKDMHGQC WKFRHIYRGT PRRHLLTTGW SNFVNQKRLV AGDSIVFLRA ENGDLCVGIR RAKKGIGGGT EFSSGGWNNP LFGGGFLCGS ESNLMSGGDH EMLVGRVAAE SVVEAVTCAV NGRPFEVVYY PRASSPEFCV KASVVKAAMQ IQWCSGMRFK MPFETEDSSR ISWFMGTISS VQVADPILWP DSPWRLLQVV WDEPDLLQNV KCVNPWLVEL VSNMPTFNLS AYSPPRKKQR FLQDPYFQVI NQLPMPSFSS NLLNYTNSIC TIEDNNSSGG IQGARHPQFG LSPSDFPFNK LPADMLLGGF SRLDHAAAQP IMPHCGTFKN NTTTKANVDI SCLLTVGNPG QNFKESNETK APHILLFGKL IHTEQKSSNT TSSASTNGNS VSEGNSLKTS NASDGGSPWY KEQHKSDLGN DNVNTLCIAL // ID A0A0B2P3N3_GLYSO Unreviewed; 299 AA. AC A0A0B2P3N3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN02194.1}; GN ORFNames=glysoja_002218 {ECO:0000313|EMBL:KHN02194.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN02194.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN02194.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN02194.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN670278; KHN02194.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 34108 MW; 8A51EF43339A3C8C CRC64; MSSIHHYSPE TTLYWTSDHQ QQQQQQQQQQ QQAATWLSNS HTPRFNLNED DDEEDDVVVS DKATNNLAQE QEKEAMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLDSSGG DSAAAKGLLL SFEDESGKCW RFRYSYWNSS QSYVLTKGWS RYVKDKRLHA GDVVLFHRHR AHPQRFFISC TRHQPNPNPP AHVSIRSSSY SALPAYPTHH HHHLPFPYQP HSLHAPGGGS QGQNETTPGG NSSSGRVLRL FGVNMECQPD NDNDSQNSTH ECSYTHLYHH QTSSYPSSNP HHHMLPQQP // ID A0A0B2P3Y5_GLYSO Unreviewed; 698 AA. AC A0A0B2P3Y5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_002362 {ECO:0000313|EMBL:KHN02338.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN02338.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN02338.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN02338.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN670278; KHN02338.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 692 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 77528 MW; 6AD9AD27920FDF18 CRC64; MQEFAVRTGY CMMESKEKLK EVEKCLDSRL WHACAGGMVQ MPVVNAKVFY FPQGHAEHAC GPVDFRVYPK IPPFIQCKVG AIKYMADPET DEVYVKLRLV PLTRNEGDFE DDAVGGINGS ENKDKSPSFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQNIL AKDVHGETWK FRHIYRGTPR RHLLTTGWSS FVNHKKLVAG DSIVFLRAEK DDLRVGIRRA KRGIGIGGGP EAPAGWNSGG GIRPMPYGGF SAFLREEDSQ LLRNGLSPNA KGKVRPEAVI EAATLAANMQ PFEVVYYPRA SAPEFCVKAN LVRAALQVRW CPGMRFKMPF ETEDSSRISW FMGTISSVNF ADPRWPNSPW RLLQVTWDEP ELLQNVKRVS PWLVEIVSNM PTIHLSHYST QQKKPRFPQH PDFSFDGQIS LPAFPSNFLG PSNPFGCLAE STPAGIQGAR HANYGISLSN LHFNKLQSGL FQAGFPPLDH TASPVLRVSS NNAATMQKVG TGDNVSCLLS MSTATQPSKK VDDVKAPQLV LFGQTILTEQ QISLNTSAKT DPTRNNSFDG NADKMCKFSD GFGYALHPQG SSLERLQWYK DQQKETMASL ETGHCKVFME SEDIGRTMDL TMLGSYDELY RKLADMFGIE KSVVLSHMLY RDTTGAVKHI GDEAFSEFTK TARRLTILMD SNSDGRGI // ID A0A0B2P5H6_GLYSO Unreviewed; 228 AA. AC A0A0B2P5H6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN04511.1}; GN ORFNames=glysoja_019598 {ECO:0000313|EMBL:KHN04511.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN04511.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN04511.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN04511.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN669211; KHN04511.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 25764 MW; A353D6871710F91F CRC64; MVAAIAYEES RRKRVEENRK RMEALNLPLL SQALHKSPSP KSSPLKQVKN RTIQKELVVV RRSSRVANLP TPVYKEVVVD RVTIPRRTLG RPYNRHRDYA NRVYASDEAR EEALEKAETL MSGLESEHPA FIKSMLQSHI SGGFWLGLPV HFCKSNLPKG DEVMTLIDED GNEYPTIYLA RKTGLSGGWK GFAVGHDLAD GDAVIFQLIK HTAFKVYIIR ANSPPEDK // ID A0A0B2P655_GLYSO Unreviewed; 661 AA. AC A0A0B2P655; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_041212 {ECO:0000313|EMBL:KHN04711.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN04711.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN04711.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN04711.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN669057; KHN04711.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 632 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 74136 MW; 3E01BE75E87B50F5 CRC64; MSLNRGGGGE EDELYEQLWK ACAGPHVEVP RTGQRVFYFP QGHMEQLEVS TNQELNQRIP LFKLPSKILC RVVNVHLLAE QETDEVYAQI TLVPESNQAE PMSPDPCPAE LPSPRVHSFC KVLTASDTST HGGFSVLRKH ATECLPALDM SKSTPTQELV AKDLQGYEWR FKHIFRGQPR RHLLTTGWSN FVTSKRLVAG DTFVGNNGEL RVGVRRIAPV QSSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRA SQFIVSVNKY LEAINQKCNV GMRFKTRFEG DESPENYKRF SGTIVGVEDI SPHWVNSNWR SLKVQWDEPA SFPRPDRVLP WEIEPILASV PTTSSQTAAI KNKRPRQASE LADLGDTPLA FPTFWDAGLT QSDMAKLSVM AEIKRSDSSS HMWHHNSKSS NNGISMNQTE ASWLSSPSQL YHDTTDDSKS ISAWPISKPH SERLNNDHFL DQVDKEINKV EAATSYRLFG IDLIDHARNN SLSAENASGI TSECKIDVNH VSDISKASKE WNQEQLQLSP KETQSKQVCS RSCTKVQMQG VAVGRAVDLT TLDGYDQLVD ELEKMFDIKG QLQLRNKWEI VFTDDEGDMM LVGDDPWLEF CKMVRRIFIY SSQDVHKLSS GSKLPISSME EIVTSLDTTE T // ID A0A0B2P8Q0_GLYSO Unreviewed; 792 AA. AC A0A0B2P8Q0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_024691 {ECO:0000313|EMBL:KHN05725.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN05725.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN05725.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN05725.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN668168; KHN05725.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 748 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 87677 MW; 2967D524981F86AD CRC64; MEIDLNHEVT EAEKNAFCDR ECEKGAGAGA GITCWSSSTC SSSSAACVSS SYLELWHACA GPLTSLLKKG NVVVYFPQGH LEQVASFSPF TPLEIPTYDL QPQIFCRVVN VQLLANKEND EVYTQVTLLP QPELEGMYSE GKELEELGAE EDGDERSPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGENGEL RLGIRRAVRP RNDLPESVIG SQNCYSNVLS SVANAISTKS KFHVFYSPRA SHADFVVPYQ KYVKSIKNPV SIGTRFKMRF EMDESQERRC SSGTLIATSD LDPYRWAKSK WRCLMVRWDE DIETNHQDRV SPWEIDPSAP LPPLSIQSSP RLKKLRTGLQ VASPSHLITA ARGSGLVGFE ESVRSPKVLQ GQENAGFVSF YYGCDTVTKP PGFEMSSPSH PNLGSAEVRK VSSSELSSAH PFSYAGFVET NRFPRVLQGQ EICSLKSLTG KVDLNLGAWG MPNLSCTTFN LHQATKPNFQ PSLFPYGDIH QAGQASLFCS KSTTFQRENV PFNKPSTQAG IIVNEVGRSD LPNEHKLQDN ISSAANMGVS NDNNVQGKVN ACKLFGFSLS GETTAQNLQN SAKRSCTKVH KQGSLVGRAI DLSRLSGYND LLSELERLFS MEGLLKDPDK GWRILYTDSE NDIMVVGDDP WHEFCDVVSK IHIYTQEEVE KMTIGMISDD THSCLEEAPV IMEASKSSSV GQPDYSPTAV RV // ID A0A0B2P8Y3_GLYSO Unreviewed; 613 AA. AC A0A0B2P8Y3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN05790.1}; GN ORFNames=glysoja_038704 {ECO:0000313|EMBL:KHN05790.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN05790.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN05790.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN05790.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667980; KHN05790.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 613 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 549 613 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 613 AA; 69015 MW; AB846034D72934D7 CRC64; MCGERQRVSA CAACTNNCLL FHKTKQTSPT SFFKLITKRE HLTTLYIPPA FSSTVSDLVN KKIALNDSSE RQWNVKVSGF NGSFAFMEGW STFSLNHGVK VGYLLVFNYV KDLHFDVKIY DPSACEKLNF PKTRNQKKRS RGRSGSPVRD CMLVGQESNA LVVTQHYVPK MKSQRSEVDL VVRKNGEESG QLMCISELHE DPCYSTSLEF DQSHGVNGTM KIVNGDLKVS NVDYGSHIFE NDAIVCSKDT MFEGIFSMAA ALDISEFEMS GRSTSLGEAD KSTHDKTSTL NIEENKESKA IMYSGEAQEC QFSNVLESDQ AAISKKEPAL HIDGSCNTKN KFNEISNHLD TYIHNGEMKK LPVDKTPKLY SSVDKLNVTG LPKETKGKLD HYSDPFNQDN ESHFKTAPPL MSNGEAQECQ FSEGLESDQA AISKKEPALH ICGFSDTKQN FDGISNDLDG HIYNGEMKKL PMDMTPKLCG SMDKLNITEL PKEIKDSDIS NQDDESHFKT APPLSCVVTN DNDNVSLKLP EYLPLTRRVK PFTHKKMVVL LRDSQMRLWP VFYHEQPRLL THGWLDFSRA NNIQPEDECI FEVEPDPESR YQRILAVSIV HKS // ID A0A0B2PA17_GLYSO Unreviewed; 336 AA. AC A0A0B2PA17; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing protein REM21 {ECO:0000313|EMBL:KHN06185.1}; GN ORFNames=glysoja_031627 {ECO:0000313|EMBL:KHN06185.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN06185.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN06185.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN06185.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667679; KHN06185.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 39473 MW; E305459F4FE1D07F CRC64; MTTGAERYPD FFKVFLPERH SERMLIPNAF VRLPQSQGRI PEDVILRNIS GRVWQVKTRY IGEKLYFDDG WNAFHEENCL GHADFLVFKH DRSNEFKVLI LESSTQCQKP VVKMEEENEQ EQAAAQHAED CDIEEEEDSS SKDENYDDDS DDSDFDDDEE SKEEFGAGFK SQSHHRRACK RETASSSNPD AEDPLPEYVF DPEMCIQREN HFFKAKLYRT RPNELHIPGN SIQEFSLTFP ENYVTLICCQ PCQRKDIPMN ELGDYHHNLT QQTHIRKKYQ EVTGRVCRWQ DRICIKGWAS FSKRNKIERN DTCFCEVISG EDQVVRTLEV HVARRR // ID A0A0B2PCV0_GLYSO Unreviewed; 254 AA. AC A0A0B2PCV0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN07151.1}; GN ORFNames=glysoja_032012 {ECO:0000313|EMBL:KHN07151.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN07151.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN07151.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN07151.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667267; KHN07151.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 254 AA; 28913 MW; D30570C5BF730545 CRC64; MTSSHNKHPL PTAVHFFKII LRTSLAHGIL KLPKDFTTKY GDSMSNLVFL NPPDGIEWKI CWTKLDGKIW FEKGWKEYAT YYSLDHGHLL LFQYQGTSHF DVHIFDNSAV EVDYPSSPGT RDGKERHVEI SDDSVEILDA QFSCQKTRVK STVPSPQPSK EMKFGPTTNV ERSPRVNLHQ HVQTGKEGKG IFNTECPKVE QLTSTTLKKA TTFRLVMKPS FINGEYLEIP PQFAEQHLQK THAVVLLENL DGKT // ID A0A0B2PDU0_GLYSO Unreviewed; 701 AA. AC A0A0B2PDU0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_024645 {ECO:0000313|EMBL:KHN05679.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN05679.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN05679.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN05679.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN668168; KHN05679.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 589 669 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 77159 MW; F8521939F04BEA30 CRC64; MKEGEKVLDP QLWHACAGGM VQMPQMNSKV FYFPQGHAEH AHTNIHLRLP PFILCNVEAV KFMANPETDE VFAKLSLLPL RNSELGADSD GAGGDDVAEP SCCEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSVVFLRAEN GDLCVGIRRA KKGISEGSGS GSSSVWSSAS GSGNGNCGIG PYGPFSFFLK EENKMLRNGC GGNLSGRVKV RAEDVVEAVT LAASNKPFEV VYYPRASTPE FCVKASAVRA AMRIQWCSGM RFKMAFETED ASRISWFMGT IASVQVVDPI RWPNSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNIPLI NFTPFSPPRK KLRPQHPDFP LDVQFPIPMF SGNQLGPNSP LCGFSDNAPA GIQGARHAQF GKSLSDLHLN NKLQLGMLPT NIHQLGVYNE ISNGNMMTNH DKSKESLSCF LTMGKSTKSL EKSDDVKKHQ FLLFGQPILT EQQISSCSGD VLSHRKRSVS DDKDKAKCLM DDSQSTLSQQ FSPGKASSAE FSWQLGLDTG HCKVFLESED VGRTLDLSLF GSYEDLYRRL AIMFGIERSE ILNHVLYHDA AGAAKKTGEE PFSDFMKTAK RLTILTDSGS KNIKRAFITG TRNGEHGLDA SNKTGPLSIF A // ID A0A0B2PEW8_GLYSO Unreviewed; 411 AA. AC A0A0B2PEW8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN06173.1}; GN ORFNames=glysoja_031615 {ECO:0000313|EMBL:KHN06173.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN06173.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN06173.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN06173.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667679; KHN06173.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 309 407 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 309 407 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 47200 MW; A4DA012D42756F86 CRC64; MDYHQDNPAV FFTTIKNTKQ LKVPEEFLKH LNKDLWSNSV LIGPSGDKWQ VTILKKGNNV YMDNGWSQFL KDNSVVLDEF LLFTYHGGNC FYVQIFGGNG LERLCRKEAR EEQAATPQFF DLPFSNKASI SDGCEIKKTR QEQASAPSLA RTNKSKQRKT FVGSSHLHES NSYKKDLPSS NKGTLSKGCE IKKTRQEQAA TPSFLRPNKI KQRKTSARSS NLNESKSCQE GQERVATLSW ARTNNYNSTQ RKTSAGSSHL HESNSSKEDL PFSNKASLSK DFPKPQSSIN IECSEACKLA ESFTSRNPHW KHLLTKCNLE RCILLIAAEF ARKYIPEALE QIYLWNSEGK SWEVRVHYFR NRNTWYAAFK RGWERFVRDN KLMKGDTCIF EVEEEQGHWS VHIFRTGCAP H // ID A0A0B2PF13_GLYSO Unreviewed; 1130 AA. AC A0A0B2PF13; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_032424 {ECO:0000313|EMBL:KHN07880.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN07880.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN07880.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN07880.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN666493; KHN07880.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1002 1095 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 493 523 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1130 AA; 126473 MW; F9B1505A69E12936 CRC64; MKAPSNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVAKD LHDNTWAFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKVTYTQV SLGMRFRMMF ETEESGVRRY MGTITGINDL DPVRWKSSQW RNIQVGWDES TAGERPSRVS IWEIEPVVTP FYICPPPFFR PKFPRQPGMP DDESDMENAF KRAVPWLGDD FGMKDASSSI FPGFSLVQWM SMQQNNQLTA AQSGCFPSML PFNTLQGNLS TDDPSKLLSF QAPVLSTPSL QLNKPNLPNQ INQLQQSPVS WPQQQQLQQQ QQLQQQQQQQ QQQQQQLQQQ QQQQLQSLLQ VPMNHLQQQR EQQLPEPQNL PLWQQLPQQL GQQPQKQQSS QHATIMNNGV VASNQITNQF SQQPMAYGQL QQQQLLSGGI QSATKNTLPL TSLPQDSQFQ QQIDQQASLL QRQQQQQQTQ LQQSPLQLLQ QNLPQRAPQQ PPATQMLQQN PSEQQLHLQL LQKLQQQQQH QQLLSTSTPL LLSQLLQQQN THQQNQQLPQ PLPPISQHQP QQLGNNAFST EKLLNSNNLS SSLMQSQKLS MNHPQNTQKS LTITRAPSTL TEGDAPSCST SPSTNNCQVT PPNLLKRNQQ LPATLRGSLI VEPTSNLIQE LHSKPGTQIK QEFLNVKGPD QLKYKGTITD QLEASSGTSY CLDPPGNVQQ NLPLSNFCME GDVQSHPRNS LPFDSNLDGL TPDTMLLTGY DSQKDLQNLL SNYGGAPREI ETELSTADIS SQSFGVPNMP FKPGCSSDVG INDTGVLNNN NGLRANQTPR MRTYTKVQKR GSVGRCIDVT RYKGYDELRH DLARMFGIEG QLEDPLRTDW KLVYVDHEND ILLVGDDPWD EFVSCVQSIK ILSSAEVQQM SLDGDLGGNV PIPNQACSGT DSGNAWRGQY EDNSAASFNR // ID A0A0B2PF21_GLYSO Unreviewed; 431 AA. AC A0A0B2PF21; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN06172.1}; GN ORFNames=glysoja_031614 {ECO:0000313|EMBL:KHN06172.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN06172.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN06172.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN06172.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667679; KHN06172.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 48891 MW; 2B5D6474ADFE0713 CRC64; MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELSPIVT LSVPDGSVWH VGLKKADNKY CFLDGWKEFV QRYSIGVGYL LVFRYEGKSS FNVHIFNLAT SEINYQSVTR SSNEGLHFTN CLKFFEEMEG EDSIEISDSS PSHLSPSSLQ NQALAGSVDK MMPGKSYNTP PALQNLFNGS KLNSINWGEG GNAHSSRSAN SLDNRLTRDI GLQFNAVEFK RSTEELKLRA SIEERMKKTT RKKRKSDGQE PSAGHEEEVE MRFRFYESAS ARKRTVTAEE RERVINEAKA FEPSNPFCRV VLRPSYLYRG CIMYLPSCFA EKHLNGVSGF IKLQISNGRQ WPVRCLYKGG RAKLSQGWFE FSLENNLGEG DVCVFELLRM KEVVLQVTIF HVTEDVGLLS PPLQHNQNMT SAKLLSTPLQ QHLTSTKMVR N // ID A0A0B2PF62_GLYSO Unreviewed; 337 AA. AC A0A0B2PF62; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN06174.1}; GN ORFNames=glysoja_031616 {ECO:0000313|EMBL:KHN06174.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN06174.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN06174.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN06174.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667679; KHN06174.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38771 MW; A0A8D34A09E2D7F3 CRC64; MFHCSSITIT MGDFSLHENN MDYHQDNPAV FFTIINNTKL LKVPEEFLKH LNEDLSSNAV LIGPSGDKWQ VTILKKGNNV YMNNGWSQFL KDNSVVLDEF LLFTYHGGNC FYVQIFCGNG LERLCLKETR QEQAVTPQFL DLTFSNKALI SDGCEIKKTS QEQASTPSLV RITNKSKQRK TSAGSFLHHE SKSSCQEDLP FSNKALLSKD FPKPLSSIKF ETSEACKLAE SFTSRNPHWK HLMTKCNVED HCTLHIATQF ACKYIPEVVK QIILWNSEGK FWEVEVTCLR YQNKRYTRFT TGWGKFVRDN KLMKGDTCIF ELEDENHMSV HIFRTSV // ID A0A0B2PFN6_GLYSO Unreviewed; 527 AA. AC A0A0B2PFN6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN06382.1}; GN ORFNames=glysoja_021220 {ECO:0000313|EMBL:KHN06382.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN06382.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN06382.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN06382.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667611; KHN06382.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 167 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 527 AA; 59281 MW; DD8624BE3DF2FD18 CRC64; MELMQEVKGY SDGREEEEEE EEAAEEIITR EESSSKHHYP FSSTSNLSLS SSAPSISSNY TSTTTTAARP HHHHHHQEAA GSNFIINNNH HHHQHHHHHT TKQLDFMDLS LGSSKDEGNL QGSSSSVYAH HHHAASASSS ANGNNNNSSS SNLQQQQQQP AEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSAN EKGLLLNFED RNGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDMV SFQRGVGELY RHRLYIDWWR RPDHHHHHHH GPDHSTTLFT PFLIPNQPHH LMSIRWGATG RLYSLPSPTP PRHHEHLNYN NNAMYHPFHH HGAGSGINAT THHYNNYHEM SSTTTSGSAG SVFYHRSTPP ISMPLADHQT LNTRQQQQQQ QQQEGAGNVS LSPMIIDSVP VAHHLHHQQH HGGKSSGPSS TSTSPSTAGK RLRLFGVNME CASSTSEDPK CFSLLSSSSM ANSNSQPPLQ LLREDTLSSS SARFGDQRGV GEPSMLFDLD PSLQYRQ // ID A0A0B2PGV4_GLYSO Unreviewed; 736 AA. AC A0A0B2PGV4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_014245 {ECO:0000313|EMBL:KHN08480.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN08480.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN08480.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN08480.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN665895; KHN08480.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 736 AA; 80447 MW; 60046075A1D1964E CRC64; MGLIDLNTTE DDEAAPLSAS SPASYSSSSS HSGISTSAST LVVPPTPPSV CLELWHACAG PLISLPKKGS VVVYLPQGHF EHVQDFPVTA YDIPPHVFCR VLDVKLHAEE GSDEVYCQVL LVPESEQVEQ SLREGEIVAD GEEEDTEAIV KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QQRPSQELVA KDLHGLEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGDDG ELRLGIRRAA QLKSAGSFAV PSGQQLNPAT LKGVVNALST RCAFSVCYNP RFSSSEFIIP VHKFLKSLDC SYSVGMRFRM RFETEDAAER RCTGLIAGIS DVDPVRWLGS KWRCLLVRWD DIEAARRNRV SPWEIEPSGS ASNSSNLMSA GLKRTRIGMT SVKLEFPTPD GIGASDFGES LRFRKVLQGQ EILGVNTPFD GINAQSPRLY ELGRCYPGSN CSGIPPTGNN IRMPHPASDF SCNGIGFSES FRFQKVLQGQ EILPSQPYGR VLSIEEARAN GCYGLYDGCQ LLNTRNGWSA QMHDNAPYLH ASVTPAQVSS PSSVLMFQQA VNPVSNCDYN KNKRDKEMEG RVHYQGLYTS EVKGRTFASS PFDDPILSTL APEGASSLGM FDVHNQLGSS RPHESVSALR SSQELVSSCK SSCRLFGFSL TEDTHLAKKE ASASTITLPL SSGPSFTRLV EDEFHPGHSL PSKGVGSNCT KGVLQY // ID A0A0B2PHC3_GLYSO Unreviewed; 902 AA. AC A0A0B2PHC3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_032790 {ECO:0000313|EMBL:KHN06947.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN06947.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN06947.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN06947.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN667349; KHN06947.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 769 853 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 902 AA; 100159 MW; 80BDD743A534951F CRC64; MRLSSADFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQNEA YLPAELGTAS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWQVTLL NEKNQLLLGI RRANRPQTVM PSSVLSSDSM HLGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITGIGDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSSFPLRLKR PWPPGLPSFH GMKDDDFGLN SPLLWLRDTD RGLQSLNFQG IGVNPWMQPR FDPTVLNMQT DMYQAAAAAA VQDMRSLDPS KQLSASLLQF QQPQNFPNRT AALMQAQMLQ KSQPQQIFGN NQENQHSPQS QPQTQAHLQQ HLQHQHSFNS QHHHHQQQQQ QQQVVDNQQI SSAVSTMSQL FSAPQPQSPP MQAISSLCQN FSNSNGNSVT TIVSPLHSIL GSFPQDETSH LLNLPRTSSW IPVQNSSGWP SKRVAVDPLL SSGASHCVLP QVDQLGQPHS TMSLNAITLP PFPGRESSID QEGSNDPQNH LLFGVNIDPS SLLMPNGMSS LKGVSGNNNS STLPYQSSNY LNTTTGTDSS LNHGMTPNIG DSGFLHCPED AGQGNPLNKT FVKVYKSGSF GRSLDITKFS SYHELRGELA RMFGLEGELE DPVRSGWQLV FVDRENDVLL LGDGPWPEFV NSVWCIKILS PQEVQQMGNN GLELLNSVPN QRLSNGICDD YVSRQDPRNL STGITTVGSL DY // ID A0A0B2PHV3_GLYSO Unreviewed; 841 AA. AC A0A0B2PHV3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_032160 {ECO:0000313|EMBL:KHN08745.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN08745.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN08745.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN08745.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN665718; KHN08745.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 799 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 841 AA; 93248 MW; C59AE811EFB48734 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EIDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLSMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA RDLHDAEWKF RHIFRGQPKR HLLTTGWSIF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSLHDGRD EATNGLMWMR GGPVDQGLNS LNFQGAGMLP WMQQRLDPTL LGNDQNQQYQ AMLAAGLQNL GSGYLMKQQM MNFQQPYHYL QQSGNSNSPL QLQQQQPIQQ SVSSNMLQPQ AHVLTENLSQ HLLQKPHNNQ EVQAQQQQHT YQDSLLIPSD QLHQRQHSGI PSPSYSKPDF LDSSMKFPAS VSPGQNMLSS LCPEGSGSLL NLSRSSLSLL TEQLPQQQWT QKYAPVQVNT YGGTVSHAQY SGKDSAMVLP HCNSDAQNST LFGVNIDSSG LLPITVPGYT TSSADTNSST MPLADSGFQG SLYGCMDSSE LLQSAGHVDP ENQSQTFVKV YKSGSVGRSL DISRFSSYHE LREELAQMFG IEGKLEDPLR SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDI QKMGEQAVES LALGSGQRLN GTGAESQDIV SGPPSIGSLE Y // ID A0A0B2PJT5_GLYSO Unreviewed; 752 AA. AC A0A0B2PJT5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=B3 domain-containing transcription factor ABI3 {ECO:0000313|EMBL:KHN07827.1}; GN ORFNames=glysoja_035865 {ECO:0000313|EMBL:KHN07827.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN07827.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN07827.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN07827.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN666624; KHN07827.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 593 695 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 593 695 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 752 AA; 83073 MW; 40E3AA51CF1FAE68 CRC64; MECEVELQGG DLHAGEVTDP NPIGFGNMED EHTLAVAERE MWLNSDQDEF LGVNDASMFY ADFPPLPDFP CMSSSSSSSS ALPFPVKTMT CSTRTTTTTT TSSSSSSSSW AVLKSDAEED AEKNHCNRYM HDQLDATLSS TASMEVSQQK NLDPGLGGPV GECMDDVMDT FGYMELLEAN DFFDPASIFQ NEDNENPLVD FGTLEQHVPL HDEQHEMLHH QQGRTEEVDH QVPVCEEIQG DEEGGDGVGV DDEMSNVFLE WLKSNKDSVS ANDLRNVKLK KATIESAARR LGGGKEAMKQ LLKLILEWVQ TSHLQNKRRK ENNGSSISSA LQAQFPDPSV QNNQNTQSGS FSPESNACFN NQTPWLSPQT FATDQAPLMV PPQQFQQPMV GYVGDPYTSG AASNNITTSH NHNSNNPYQP GAEQYHMLES AHSWPHSQFN VACHYSQSFG DNNGIFPHGG FGGGYGNNQY PYQFFHGPGD TLMRLGPSAT KEARKKRMAR QRRFLSHHRH HNGNHQNSGS DPHARLGGGD NCTTGLAAPH HANPTANWMY WQAMTGGAAG PLGGRCGGSF GSPGRAASCG PGWKPEKNLR FLLQKVLKQS DVGSLGRIVL PKKEAETHLP ELEARDGISI TMEDIGTSRV WNMRYRYWPN NKSRMYLLEN TGDFVRANGL QEGDFIVIYS DVKCGKYMIR GVKVRQQGVK PETKKVGKSQ KNQHGTGTNA STSGKMHQLQ LVLLLIMARH RHRKPKLKKV VN // ID A0A0B2PLF2_GLYSO Unreviewed; 720 AA. AC A0A0B2PLF2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_026855 {ECO:0000313|EMBL:KHN09955.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN09955.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN09955.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN09955.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN664917; KHN09955.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 720 AA; 79005 MW; BEEC9AC1B1DC1352 CRC64; MAGLIDLNNA TEDDETPSSG SSSSSSSSST VCLELWHACA GPMISLPKKG SVVVYFPQGH LEQHLHDFPL PASANIPSHV FCRVLDVKLH AEEGSDEVYC QVVLVPESEQ VQQKLREGEF DADGEEEDAE AVMKSTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE LVAKDLHGQE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG EDGELRLGIR RAAQLKSGST FSALSGQQGS PTSLMDVVNA LSARCAFSIH YNPRVSSSEF IIPIHRFVKS LDYSYSAGMR FRMRFETEDA AERRFTGLIV GIADVDPVRW PGSRWRCLMV RWDDLEATRH NRVSPWEIEP SGSASTANNL MSAGLKRTKI GLPSAKLDFP VSNVIGTSDF GESLRFQKVL QGQEMLGVNT TYDSFNAQSH QLSDLRRCYP GSNYPRIAAT GNSIGISQVS SNVSNNGIGF SESFRFQKVL QGQEILPSQP YGRALSVDEA CGNGRFGLFD GFQAMRSRNG WSSHVSNNSS HLHPPVPSGQ VSSPSSVFMF QQAVNPVLNS DYNNQIGQVM GDKVHQRVSY ASEVKGGKFV STPYEPLLRG LSQEGTNSFG LSNFHNQLDS SRSHDSVSVL RASQELVPSC KSRCRVFGFS LTEGAPVASK EATDSSAVAC AGPSFTRHVE DDFHPGHSLR SKAVASYCTK SQFLPNEYNA // ID A0A0B2PLR3_GLYSO Unreviewed; 879 AA. AC A0A0B2PLR3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN08583.1}; GN ORFNames=glysoja_014348 {ECO:0000313|EMBL:KHN08583.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN08583.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN08583.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN08583.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN665895; KHN08583.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 563 613 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 879 AA; 96869 MW; 83067C0FD9B04617 CRC64; MASASSSSSK LCFNSDCKEL KSERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA SGWRSCETCL KRIHCGCIVS SHAFMLLDPG GIECYACARK SIILPSNLPW PQSFSLQNRL SDRLRDLSAK GWSQLAGSGP VPWKQAPSLF NSASSSDLIP EVPSLVELSN SFDKMYCNER LPASALEKKN EDLSGIPVNW NVKLGSREMM LMNGMRNEDK SSSCLNMCQQ PSSLKEESSP QPFGLAVPNS CQNERNGQLG VTGSHPQQTP PPPGKQFNGT MHLAPDSSGE AQIRNGRPRA DSRGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRLEPEGRLV MGFRKASSVM PSDQDNETKT GNGFSAHGEV ELADPNSWSK VDKSGYIAKE ALGSKSLISR KRKSNILSSK SKRLRIENED LIELKITWQE AQGLLRPPPS HIPSIVVIEG FEFEEYEEAP VLGKPTIFTS DSVGEKIQWA QCEDCFKWRK LPASALLPSK WTCSDNSWDP ERFSCSAAQE LTAEQLENLL PPCNSAVPKK MKATKQDPDN AEALEGLDTL ANLAILGEGE ALPASAQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT CNVCLTVKRR FRTLMLRREK KQSEKEAETT RKKQQQQHPL PLPSSEILLD EDSLPCSNTG DSSPNQNKEG NDGSDDDPSR IKSSASPFKG KIDLNIQPER EEELSPGSDS GGMMKLLHDA TERYLKQQTV NSGTGDSSGS QSQLVGDAMR EDKLSNGVAH GSSSHNTDKE HAQSLPMNV // ID A0A0B2PPY2_GLYSO Unreviewed; 843 AA. AC A0A0B2PPY2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_011992 {ECO:0000313|EMBL:KHN09718.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN09718.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN09718.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN09718.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN665212; KHN09718.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 795 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93695 MW; AA8BC5FA52748889 CRC64; MASSEVTMKG NCLNHNDGGA TEPHSPSTAK DAEAALFREL WHACAGPLVT VPREKERVFY FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELVAKDLHAN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AILTGTIFTV YYKPRTSPAE FIVPYDQYME SLKNSYSIGM RFKMRFEGEE APEQRFTGTV VGIEDSDPKR WRDSKWRCLK VRWDETSNTP RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAVPSSPD SSVLTREASS KVSIDPSPAN GFPRVLQGQE FSTLRGNFTE SNEFDTAEKS VVWPPTAVDD EKMDVSTSRR YGSESWMSMG RNEPTYSDLL SGFGTSGDPS HSSLKDQMSP AYSARKQSLD HEGKLHMPHP WPVMPSSLSL NILDSNAKGP THGGDTSFQA RGNLRFSAFG EYPALHGHKV EDSHGNLMPP PPAPQTQYQS PCSRELMSKH VSAKTCEAVK PKDGDCKLFG FSLISGPIVP EPSLSQRNVS EPAGQMHLTA HQQRTSENDE KSDHSKGSRP VDDLVVDDHD RPLQTSQSHT KDVQAKPLSG SARSCTKVHK KGIALGRSVD LTKYSGYDEL VAELDQLFEF GGELLSTKKD WLIVYTDNEG DMMLVGDDPW QEFCAMVCKI YIYPKEEIQK MSPGTLSSKN EENQSVMASD GADAKVVKCQ PHQKFNSENG LDA // ID A0A0B2PPZ8_GLYSO Unreviewed; 292 AA. AC A0A0B2PPZ8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN11486.1}; GN ORFNames=glysoja_015381 {ECO:0000313|EMBL:KHN11486.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN11486.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN11486.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN11486.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663747; KHN11486.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 33596 MW; FD8797B4A674C05D CRC64; MQYTILTISS SQRIPRSFVN KCWEGISNPV LLLLPNGVEW KVKWKKLDAD ILLIEDWKEF AEFCSLDKDH LLVFEYLRKS QFLVVIFDQN GLEMEYPLMG GTLDGDEKGN SLCQHKRAKS PVPFSSSIKK VKGKTLTSGR GRGMMNAKRR CSNSNALKSS TALERAKAFR SENPFFIREM HPSYIHKYIM VMPGNFLTED QQKENDSVTL WISEERSWHV KFYTNRSGGQ INLSTGWVDF VKDNNLKIGN VCVFEQIKKT RISFRVFIFR DGEESSPSNF SGNLKIIINI VV // ID A0A0B2PQP8_GLYSO Unreviewed; 618 AA. AC A0A0B2PQP8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_046062 {ECO:0000313|EMBL:KHN09922.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN09922.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN09922.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN09922.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN664983; KHN09922.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 618 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 618 AA; 69238 MW; 10C0EB7133118773 CRC64; MSLNRGGGGE EDELYEQLWK ACAGPHVEVP RTGQRVFYFP QGHMEQVKVS TNQELNQRIP LFKLPSKILC RVVNVHLLAE QETDEVYAQI TLVPESNQAE PMSPDPCPAE LPSPRVHSFC KVLTASDTST HGGFSVLRKH ATECLPALDM SKSTPTQELV AKDLQGYEWR FKHIFRGQPR RHLLTTGWSN FVTSKRLVAG DTFVGNNGEL RVGVRRIAPV QSSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRA SQFIVSVNKY LEAINQKCNV GMRFKTRFEG DESPENYKRF SGTIVGVEDI SPHWVNSNWR SLKVQWDEPA SFPRPDRVLP WEIEPILASV PTTSSQTAAI KNKRPRQASE LADLGDTPLA FPTFWDAGLT QSDMAKLSVM AEIKRSDSSS HMWHHNSKSS NNGISMNQTE ASWLSSPSQL YHDTTDDSKS ISAWPISKPH SERLNNDHFL DQVDKEINKV EAATSYRLFG IDLIDHARNN SLSAENASGI TSECKIDVNH VSDISKASKE WNQEQLQLSP KETQSKQVCS RSCTKVQMQG VAVGRAVDLT TLDGYDQLVD ELEKMFDIKG QLQLRNKWEI VFIDNEGDIM LVGDDPWL // ID A0A0B2PQY1_GLYSO Unreviewed; 432 AA. AC A0A0B2PQY1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN11485.1}; GN ORFNames=glysoja_015380 {ECO:0000313|EMBL:KHN11485.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN11485.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN11485.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN11485.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663747; KHN11485.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 218 315 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 338 427 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 218 315 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 338 427 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 50531 MW; 7453500DABED100C CRC64; MQYTILTISS WQRIPRSFVN KCWEGMSNPV VLLLRNGAEW KVKWKKLDVD VWLIDDWKEF AGFCCLDQDH LLVFKYMGKS RFQVVIFYQN GLEMQYPSME ETIDGNSLCQ PKRAKSPLPF SSSIKKVKTN PRKEPSSYPG HDHDVKTEPA QSQRRKVELS KKFHADDLDD AKPKKRGGRR RRIMCSNSRA IKRDELLQDT ESSTALERAK AFRTDNPSFI RAMGKSYIER SVLFMPGNFI TEDQQKEDDH VFLWISNERA WHVKFYLSHS SGQILLSIGW MDFVKDNNLK IGNVCVFEQI KKPGISFRVV IFRDPEESSP FKFPDSESRR FNNNKVSENH FTISIKPSQL CHMNVPKKFI KNHDIDNTKE VTLQVGKRSW NVTLDCYGRF TSGWSEFMSQ CDLEAGDVCY FELIDKKKFV FEVRFKRCIS ID // ID A0A0B2PTQ7_GLYSO Unreviewed; 669 AA. AC A0A0B2PTQ7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_044068 {ECO:0000313|EMBL:KHN11044.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN11044.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN11044.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN11044.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN664044; KHN11044.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 545 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 669 AA; 74700 MW; B5AB45148295BB4F CRC64; MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV TSPDDPLPES PRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRQVVQ GENGELRVGV RRLMRQQSNM PSSVISSHSM HLGVLATASH AIATGTLFSV FYKPRTSRSE FIVSVNKYLE AQSHKLSVGM RFKMRFEGDE VPERRFSGTI VGVGDNKSSV WADSEWRSLK VQWDEPSSIL RPDRVSPWEL EPLVSTPPTN PQPSQRNKRS RPPILPSTMP DSSLQGVWKS PVESAPFSYC DHQHGRDVYP STNFNSTATG FLGFGGNCYA SNKSIYWSSR MENSTESFSP VALKEFGEKR QGTANGCRLF RIQLHDNSNS NEESLPMVTL SGRMGDDGPL PSLDAESDQH SEPSNVNRSD IPSVSCDAEK SCLRSPQESQ SRQIRSCTKV HMQGMAVGRA VDLTRFDGYE DLLRKLEEMF DITGELCGST KKWQVVYTDN EDDMMMVGDD PWLEFCSIVR KIFIYTAEEV RKLSPKIGLP ISEEVKPSKM DSEAVANPED QSSIVGPGC // ID A0A0B2PTZ5_GLYSO Unreviewed; 439 AA. AC A0A0B2PTZ5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein REM16 {ECO:0000313|EMBL:KHN12746.1}; GN ORFNames=glysoja_008709 {ECO:0000313|EMBL:KHN12746.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN12746.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN12746.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN12746.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663007; KHN12746.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 349 406 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 349 406 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 439 AA; 48963 MW; 111C6AED56BDA94E CRC64; MVGQNCGGCR SWEEDIYWSH FQFLHFVQFL RADYDQHLAL PKAFSDNLKK KLPENVTLKG PGGVVWNIGM TTRDDTLYFA HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGGSLCE KAGSYFVRKC GHTGIEHAGG SLNKKRDTDN NSLEEGNIPP SNAGVECALH EKSVHANGTK EPIDVPPETP PTEKTFNAGV ESSGVEQFTP DGGVTLVAVP SETANGKRIR NIVSAVKHVQ TKRRGRPAKV HVRERTLDWV AALEASEPIS TSRSGTYEVY KSNRRPVTDD ETKMIESLAK AACTEDSIYV VMKPSHVYKR FFVSMRGTWI GKHISPSSQD VILRMGKGEW IARYSYNNIR NNGGLTGGWK HFSLDNNLEE GDACVFKPAG QMNNTFVIDM SIFRVVPETV PLTPMSRGTG RRGRKQATMK SIQTQLSPP // ID A0A0B2PUX0_GLYSO Unreviewed; 285 AA. AC A0A0B2PUX0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN11484.1}; GN ORFNames=glysoja_015379 {ECO:0000313|EMBL:KHN11484.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN11484.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN11484.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN11484.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663747; KHN11484.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 33026 MW; 2C3FF7C88D97AE43 CRC64; MATPPLVQRK ASLPIHFFKT ILESNVEWMK IPNKFTRRYG GGLSNPVFLR PPDSKEWEVH WTKENGEVWF QKGWKEFVEY YSLEHGHFVL FKYNGTSLID VLILDRSAIE IDDEMGTVDP NVEKLHADKG VRSDHHQTKV RVRPRSPLVS SEPRNKMPSE KAIERTSSLN TPKLLRAKKV ARNFVSNNVF FTVVITRPQL EEGAWSWSVK LPNCRTISCG WCLFARENVL QIRNVCIFEL ISTKDAVFKV PCFQKSNLIH TLVGAFSSWR ILNKYHFPLE WGKSP // ID A0A0B2PV20_GLYSO Unreviewed; 413 AA. AC A0A0B2PV20; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor NGA1 {ECO:0000313|EMBL:KHN11362.1}; GN ORFNames=glysoja_036059 {ECO:0000313|EMBL:KHN11362.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN11362.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN11362.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN11362.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663793; KHN11362.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 90 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 90 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 45903 MW; 22FD2B44D3CF4D91 CRC64; MELMQQVKGN YSDSREEEEA AAEIITITRE PESSRLHQQD AASNFGKKLD LMDLSLGSSK EEEEGKLQQG GGGGGVVHHA HEIVEKENMF EKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS SSNEKGLLLN FEDRNGKVWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGLG DLYRHRLYID WRKRSAHPHA HHHAPDPLFL PSIRWYSLPP TMPPRYHHDH HFHHHLNYNN LFTFQQHQYQ LGAATAAATA AHHGDQNSGS GSLYYLRSSM SMGGGDQNLQ GRGNNIVPMI IDSVPVSVGH HNNRHGNGGI TSGGATSSGK RLRLFGVNME CASSAEDSKG LSSGSAAHVT TAASSSLHQR LRLPLPHEDP LSSSSARFGD HKGGSTGTSL LFDLDPSLQY HRQ // ID A0A0B2PVC0_GLYSO Unreviewed; 244 AA. AC A0A0B2PVC0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN11482.1}; GN ORFNames=glysoja_015377 {ECO:0000313|EMBL:KHN11482.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN11482.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN11482.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN11482.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663747; KHN11482.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 244 AA; 28444 MW; 334CFE0C1068A9D2 CRC64; MAAHRPGRDA TLPILFFKII LKTNLERLYG NEWKVNWTKQ NGEVWFEKGW KEFVEHYSLD HGHLIFFKYE GTSQIDVLIL DQSALEIDYL CDTCDENETL DHTHEAPNTI FGEWPDQKAE KMRGEEPIER TSSLNMPTQS RAKEVARNFI SYNPFFTVFI KPVHVADGRL PLPDLKGIIE NKEKYLKLQL GERSWNVKLL NNRLSAGWTS FASESELQPG DVCVFELINR EDSVFKVHVF KRHC // ID A0A0B2PWT0_GLYSO Unreviewed; 896 AA. AC A0A0B2PWT0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_019980 {ECO:0000313|EMBL:KHN12007.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN12007.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN12007.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN12007.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663545; KHN12007.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 760 846 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 896 AA; 98771 MW; 89AC33DE76B20817 CRC64; MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPLVG SRVVYFPQGH SEQVAASTNR EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT PGKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLRRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL GVTPWMQPRL DASIPGLQPE LYQAMASSAF QEIRTMDPSK SSQSLLQFQQ TSNVPSAHAS EVQRQVLPQS QPQNTLLHNY QENQVPAQSQ LLQQQLHRYH PYSDPRQQQQ QLKNLPVQQQ LPNVISPLSN FASGTQSQSP PIQALASHCQ QQSFPELMRN HISGSDVSSI HSLLGSFSQD GTSQLLNLSG SNSVMSSAAM LPKQITTEPP QLPSAAPQCV LPQVENLGTS QSNVSELAAL PPFAGREHSA YHAAADPQSN LLFGINIDPS SLMLQNGMSN LRNIGNVNNS LSLPFSASNC GGASGTDFPL SSNMTTSSCV DESGFLQSSE NVDQANTPTG TFVKVHKSGS FGRSLDISKF SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKGLSPSTSA PGNKLSTPAN SCDNYVSQQE LRSSRNGMAS MGSFHY // ID A0A0B2PX49_GLYSO Unreviewed; 1125 AA. AC A0A0B2PX49; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_026195 {ECO:0000313|EMBL:KHN12303.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN12303.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN12303.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN12303.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663228; KHN12303.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1091 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1125 AA; 125875 MW; 3FB2016BA51611FB CRC64; MKAPPNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS VVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALFNQV SLGMRFRMMF ETEESGVRRY MGTITGITDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN QVNQLQQSPT SWSPQQQQQQ QQQKLQSMLQ TPLNPLQQQR QQQLPVPQNL PQPQQQQPQM PQQRAQQPQE QQQQSCQQTI MNNGAVASNQ IPNQCVQQPV SYSQLQQQQL ISGSIPPQQC FPSPNKNTLL MTSLPQDSQF QQQIDQQASL LQRQQLQQQQ QQTQLQSSPL QLLQQSLSQR APQQPQMTQM SQQNSSDQQP QLQMLQKLQQ QQQQQQQQQQ QKPLSTSSPL LQSQLLQQQN THQQNQQFPQ LPLSQGHQPQ QLGNNAFSME KLLNGNNYSS SSLMQTQQLS VNQPHNTQKS LTNTRAPSTL TDGDAPSCST SPSTNNCQIS PNLMKRNQQV SATLGGPSVV EPTNHLMQEL HSKSEMQIKH ELPSVRGTDQ LKFKGTVADQ MEASSGTSYC IDPNNIHQNF PLPNFCMDGD VQSHPRNNFP FASNLDGLTP DTLLSRGYDS QKDFQNLLSN YGGAPRDIET ELSTAALSPQ PFGVPDMPFK PGCSSDIAIN DPGVLNNGLW ANQTQRMRTY TKVQKCGSVG RCIDVTRYKG YDELRHDLAR MFGIEGQLED PQRTEWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS SEVQQMSLDG DLGHVPVPNQ ACSGTDNGNA WRGQYDDNSA ASFNR // ID A0A0B2PXE5_GLYSO Unreviewed; 904 AA. AC A0A0B2PXE5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_018558 {ECO:0000313|EMBL:KHN12428.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN12428.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN12428.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN12428.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663169; KHN12428.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 777 861 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 904 AA; 100270 MW; AA1613774CC642B8 CRC64; MKLSSPGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NLTMHADTET DEVYAQMTLQ PLNPQEQKGA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSIRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPLFHGLKDD DFGINSSLMW LRDTDRGLPS LNFQGIGVSP WMQPRLDPSM VNYQSDMYQA MAAAALQDMW TSNPSKQHPT SSIQFQQPQN FPNQTSPLMQ TQLLQQSPSQ QAFPNSQENP HPSPSQSQAQ TQTHFQQHLQ HQHSFNNQNQ HHLLPQQQQQ PQQPQLQQQQ VVDHQQISSV VSTMSQFVSA AQSQSPPMQA ISSLGHQQSF SDSNGNPTTT AIVSPLHSIL DSFPQDDTSH LLSLPRSTSW VPVQHSTAWP PSKRVVVDPL LSSGASQCVL PQVEQLGQPH STMAQNGIAL PGFPGRECTI EGSNDPQNHL LFGVNIEPSS LLMHNGMSSL KGVSSNSDSP TIPFQSSNYL NTTGPDSSLN PGMTHNIGET GFLQTPENGG QGNPSNKTFV KVYKSGSFGR SLDITKFTSY PELRSELARM FGLEGELEDP VRSGWQLVFV DQENDVLLLG DGPWPEFVNS VGYIKILSPQ EVQQMGNNEL ELLNSVPIQR LSNGVCEDPR NLSTGITTVG SLNY // ID A0A0B2PY83_GLYSO Unreviewed; 908 AA. AC A0A0B2PY83; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_008617 {ECO:0000313|EMBL:KHN12654.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN12654.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN12654.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN12654.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663007; KHN12654.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 802 886 PB1. {ECO:0000259|PROSITE:PS51745}. SQ SEQUENCE 908 AA; 100602 MW; 0442B2878EF72750 CRC64; MMASVEEKIK TGGVGGGMVV GGQTLVAEMK LLKEMQEHSG VRKTLNSELW HACAGPLVSL PQVGSLVFYF PQGHSEQVAA STRRTATSQI PNYPNLPSQL LCQVQNATLH ADKETGRSEC STQFEFGFCL LCQEREVFPI SDFGLKHSKH PSEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTIQP PTQELVVRDL HDNTWTFRHI YRGVDEKSQL RVGVRRVNRQ QTTLPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA CPSEFVIPLA KYRKSVFGTQ VSVGMRFGMM FETEESGKRR YMGTIVGISD VDPLRWPGSK WRNIQVEWDE PGCGDKQNRV SVWEIETPES LFIFPSLTSG LKRPLPSGLL ENEWGTLLTR PFIRVPENGT MELSNSIPNL YSEHMMKMLF KPQLINNNGA FLSAMQQESA ATRGPLQEMK TTLAAENQML LKNLHPQSIP DQPNALNMQS LLKNDQPEKF HPLAKIDNHL PSGIVIDKPK LECEVLPDRV IDYPSMEGCN NEKVAVNPVN QQGLATQLPF HNQNQSPLLP QSSPWPMQPL IESSMPHPQM IGMAQADSAM VNGLFPQLDI DEWLAYASSQ PFAGQNRPTG PFSDLQEHNS LQPQVVNPPL PSMNNEVWDH YVKNFKFLSQ ADQLTSICQP GMYGLNGVPS SNNLRDLSAE SNNQSEICVN VDASNSVGTT MVDPSTSSTI LDEFCTMKDG EFQNPQDCMV GNLSSSQDVQ SQITSASLAE SHAYPLRDIP DNSGGTSSSH VDFDESSFLQ NNSWQQVPAP IRTYTKVQKA GSVGRSIDVT TFKNYEELIR AIECMFGLDG LLNDTKGSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPSEVQQM SEEGMKLLNS GALQGMNV // ID A0A0B2PY97_GLYSO Unreviewed; 422 AA. AC A0A0B2PY97; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN12547.1}; GN ORFNames=glysoja_031283 {ECO:0000313|EMBL:KHN12547.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN12547.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN12547.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN12547.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663036; KHN12547.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 356 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 356 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 48838 MW; 4654B706DDEA47DD CRC64; MSSQGYGVHF FKVILESTLR KGQLKVPTSF TRRHWQGISN PVILSLPNGT KRKVYWLKDG CDVWFSNGWR EFAKKLRLDV SHFVVFRYEG NSCFNVIIFG KSALEVEYPS SHDSNVEVEE INDTDFSAKF GEDHTSKSSK KRKIIPKEEE DDDDDEPKHC KKDSGFDYSK QKNGGSSQGD FKRRIKMFHE KVKEMFYAEN EHFTCLIQKT YTERDLLILP MEFSKPYLHK EGNATLFVDD GRSWDVGLRV NHYGQLTFSR GWRKFSLENK LKVGDVCGFE LHNSEKFSFE VSIYRLEENS STPIFKGHEQ RLSNMPSSSF RTPVTPNAST SKSKDDLCIF INEIHGRLVT LRVGCRAWQV KLLCYNANSF ARFSSGWPEF ARECDLKPGD VCILKMIDVK KLVFEVSCLK GKISREENEV YK // ID A0A0B2PYF9_GLYSO Unreviewed; 561 AA. AC A0A0B2PYF9; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN12748.1}; GN ORFNames=glysoja_008711 {ECO:0000313|EMBL:KHN12748.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN12748.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN12748.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN12748.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN663007; KHN12748.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 216 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 441 537 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 216 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 441 537 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 561 AA; 63120 MW; DF7F62A946B4A99C CRC64; MRKPHFYEVY SSAFSSHRLK LPDGFVCHME GRTYGSVSLT GPSGKTWTVQ LIKQENDLFL HHGWSTFVVD HQLECGELLV FRYEGHLHFT VQVFDKDACE KEAAFHSECS QSSKIMSTNE NQELELGVGK ELLRYEIVRP ISMFRENEET SKACSANDVP VPFHMDNSKE DEETAILYRS GKDDHRYILS GVSLSNVSAH DEKKVSQSFI SSFPYFVRIM KSFNVSGSYT LNIPYQFSMA HLPNCKIKII LHNLKGEHWT VNSVPTTRVH TSHTLCGGWM AFVRGNNIKV GDICIFELVH ECELRVRIAE VAKDGSDCQV GNLAITRPSA GHAVTSRCMP MNPKVNSKCI RKVDLSDKKW SKIGQETILS IDLKKSSRAS NTSKKMGLCP QSKAAHKKLA APRRHRVDDE LSSQAKAGLR MLFALDEQRV AQAFTSPFPS FVKIMKKFNV SGSYTLKIPY QFSAAHLPTY KTEVTLRNSR GECWTVNSVP DAKGRTVHTF CGGWMAFVRD NDINFGDTCI FELVAQCEMH VYISGVGKEG LDHQNGHLKL TNRLANVPST C // ID A0A0B2Q3V0_GLYSO Unreviewed; 840 AA. AC A0A0B2Q3V0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription repressor VAL2 {ECO:0000313|EMBL:KHN14502.1}; DE Flags: Fragment; GN ORFNames=glysoja_044615 {ECO:0000313|EMBL:KHN14502.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN14502.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN14502.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN14502.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN661668; KHN14502.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 519 569 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 290 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KHN14502.1}. SQ SEQUENCE 840 AA; 93713 MW; 56E19F037B54F776 CRC64; CSSAYEQSTY CDMFHSNDSG WRECTSCDKR LHCGCIASMS QLELLDTGGV SCISCGRNSG PQPIASNEKP NGSGTSKVQN VSTQQQCTSL ANQLTVRGMQ VGHYAENDEL QCWFKTHNVE TDGPFAEMKP EILPSVGELG NTLISQFHCE SNGSSKASKA ENCKPETEMR DIYESLAQTN LSMTLAAPLG NSNPFHSAVV DEREQSKTSP LLLGSRSHHL LPKPARSTIG TSLEANAGMV SQIRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGEYPT FSNSTIVPLF EKMLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGLPLRIQ DVKGKEWMFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRMDPE GKLIMGFRKA TNSTAVQLQK GCSETHLNAL SKKWNSAGGD MSWHNIDMPE SRKRDELPLP PVMVPEKKRT RNIGSKSKRL LIDSQDALEL KLTWEEAQDM LRPPPTVKPS IVMIEDHVFE EYEEPPVFGK RSIFVVRSTG VNEQWTQCDS CSKWRKLPVD VLTPPKWTCV ENLWDQSRCS CAAPNELNPR ELDNLLRLNK EFKKQRLAAS QRLALEHESS GLDALANAAI LGDDASDSGR TSVVSTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE REAEIAQRNQ LSWRTKDESE VDSTLRHLTP VDRLENEVRV QNELDSRSQN HAVAEAAKGQ LDLNCQPDRE DVQAWPNNLS MTSLLEEANL PLETYLKRNG LSSLISEQQT NSASNVQAQT TNDSEGKHNE DCGTALVIHE RESSPEENSG QDREQNNSLS // ID A0A0B2Q4D0_GLYSO Unreviewed; 662 AA. AC A0A0B2Q4D0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_033830 {ECO:0000313|EMBL:KHN16426.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN16426.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN16426.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN16426.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660483; KHN16426.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 662 AA; 74046 MW; D364927BDC115AF4 CRC64; MAGVGDGDLY SQLWKLCAGP LVDVPRQGER VFYFPQGHME QLQASTNQGL NQEIPHFNLP PKILCRVVHI QLLAEQETDE VYARVTLLPE SNQEEPTSPD PSPPETQKQV FHTFSKILTA SDTSTHGGFS VLRRHATECL PQLDMTQTTP TQELVAEDLH GFEWKFKHIF RGQPRRHLLT TGWSTFVTSK KLVAGDAFVF LRGENGELRV GVRRVARQQS PMPSSVISSQ SMHLGVLATA SHAFLTSTMF VVYYKPRTSQ FIIGVNKYLE AENNKFSVGM RFKMRFEVED SPERRFSGTI VGVGDVSPGW WNSQWRSLKV QWDEPAIIPR PERVSSWEIE PFAASTALNV TQQLVKSKRS RTEVSSSEIA PNSPALAFWY RGPQDPTALG SSTEVQSNEN PVVWSTRQKE INGNPMNSSS KVRVEGMRPS SPHSKPNLFM DPKNCKAVPA QSTVSSRPKD DLAHDPMECA KRSSQNPMNC WIFGVNLTNN ITNNVTLPDK EQLGCPAIIP SGPKDSIPVA ACETEAGQNP YYSLSNKEHK QNISDGSPSA SQRHTRTRTK VQMQGIAVGR AVDLTVLKDY DDLIDELEKM FDIKGELQMQ TKWAITFTDD GNDMMLVGDD PWPEFCTVVK RIFICSREDV KKMKSKHSSS SSVGEETLLS QD // ID A0A0B2Q684_GLYSO Unreviewed; 344 AA. AC A0A0B2Q684; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN15514.1}; GN ORFNames=glysoja_049765 {ECO:0000313|EMBL:KHN15514.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN15514.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN15514.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN15514.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660896; KHN15514.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 39761 MW; CFB3323663B6D433 CRC64; MAATFPQQLL VKPIHFFKII TAHNVHEGKL MIPNKFVKKY GKRLQNTLFL KTPNGAEWKM ILKKRDGKIW FQKGWKEFAE YHSLAHGHLL VFRWDVTSHF QVHIFDLSAL EIEYPTEIIK GKTASNRKGN ESPGDEHLEC HRSGQKRKVN SVEFLQQCQM RSRKCVKVEN TMILPRQALH HTATKCKGKS KAMDNQVTAL DRASSFKSCN PFFLTVMHRT HISSHGSLNL PMKFCRSHLD LHKKRRLISL QVLSGRIWPA KYQIHKQKTA IRFKLSWNAF VKDNNLKVGD VCIFELVHGT KLTFLVHIFR ETDSSNCSTS QESGQMRAAC QSQRKELKTI TATK // ID A0A0B2Q6Q3_GLYSO Unreviewed; 715 AA. AC A0A0B2Q6Q3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_038173 {ECO:0000313|EMBL:KHN15502.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN15502.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN15502.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN15502.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660972; KHN15502.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 715 AA; 79080 MW; 0731D559C2AB2B01 CRC64; MISLPKKGSV VVYFPQGHLE QHLHDFPLPA SANIPSHVFC RVLDVKLHAE EGSDEVHCQV VLVPETEQVH QKLREGEFDA DGEEEDAEAV MKSTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGQEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGED GELRLGIRRA AQLKSGSTFS ALSGQQLSPT SLMDVVNALS ARCAFSIHYN PRVSTSEFII PIHRFLKSLD YSYSAGMRFR MRFETEDAAE RRFTGLIVGI ADVDPVRWPG SKWRCLMVRW DDLEVTRHNR VSPWEIEPSG SASTANNLMS AGLKRTKIGL PSAKLEFPVS NVIGTSDFGE SLRFQKVLQG QEMLGVNPTY DSINAQSHQV SDLRRCYPVS NYPRIAATGN NIGIPQVSSN VSSNGIGFSE SFRFQKVLQG QEIFPSQPYG RALSVDEACG NSRCGLFDGY QVMRSRNGWC SDMSNNSSNL HPPVPSGQVS SPSSVLMFQQ AVNLVSNSDY NNKISQVMGG KFHQRVPYAS DVKGGKFVST PYEPLLCGLA KEGTNSFGLS NFHNQLDSSR SHDSISVLRA NQELVPSCKS SCRVFGFSLT EVAPIANKEA ADSSSVACSG PSFTRHVDDD FHPGHSLRSK AVASYCTKTR FDFFGLGSNT AIRSMKMLRN SHPLKVCCNI DYEITMYAST DAGIR // ID A0A0B2Q756_GLYSO Unreviewed; 582 AA. AC A0A0B2Q756; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN15868.1}; GN ORFNames=glysoja_013084 {ECO:0000313|EMBL:KHN15868.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN15868.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN15868.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN15868.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660700; KHN15868.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 195 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 195 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 582 AA; 65551 MW; 0A68257230EBF2DA CRC64; MELMQEVKGY SDSREEEEEE EGAAEEESSR KHHYYPFSSS PSNLYLSSSS APSISSNYTS TTTSAVARPL HHHHVINIPY QQNPWLGMNI VHHDHLIQSP ESHNSSSGLG LLHQHQDAAG SNFIINNNQH HQHHHTTKQL DFMDLSLGSS KDEGNLPGSS SSVYAHHHAA SGSSSVNGNN NLQQQQQPAE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSANEK GLLLNFEDRN GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGESYRH RLYIDWKRRR DHHHHHHHGP VDPSTTLFTP FFLPNQPHHL MSIRWGATDR LYSLPSPTPP RHHDHLQHQQ PLNYNNNTMY HPFHHHGGGS GINGTTHHYN NYYHEMSSTT NTTTSGSGSV FYLRSTPPSM PLADHQTLNT RQQQQQQQQQ QQQEGGGNVS LPPMIIDSVP VAHHLHHHHH QHQHQHQHHG GKSSGSSSPS TAGKRLRLFG VNMECASSTT SEDHPKCFSL LSSSSSMANS NSSLPPLQLL REDTLSSSAA AAARFGDQRG GVGEPSTSIF FDLDPSLQYR KR // ID A0A0B2Q7A6_GLYSO Unreviewed; 716 AA. AC A0A0B2Q7A6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_013139 {ECO:0000313|EMBL:KHN15923.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN15923.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN15923.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN15923.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660700; KHN15923.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 677 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 79454 MW; DC18899A50DCCDDD CRC64; MAHLGCCNLG GPGSSGTSLP EKGLKDDDLY RELWKLCAGP LVDVPRTGDR VFYFPQGHME QLQASTDQEL NQEIPHFNLP AKIFCRVVNI QLLAEQDTDE VYACIALLPE SDQTEPTNPD PNISEPPKQK FHSFCKILTA SDTSTHGGFS VLRKHATECL PALDMTQATP TQELAAKDLH GFEWKFKHIY RGQPRRHLLT TGWSTFVASK RLVAGDAFVF LRGEHGQLRV GVRRLARQQS PMPSSVISSQ SMHLGVLATA SHAVMTRTMF LVYYKPRTSQ FIVGLNKYLE AVNNKFSLGM RFKMRFEGDD SPERRFSGTI VGVGDVSAGW SNSQWRSLKV QWDEPATIPR PDRVSCWEIE PFVASTALNV TQPAVKGKRS RPADVSSSAA SGFWYHGSSN ELSQLGAATA EVQSKENQVV PCSLRQKDII NSNPIDANNS SISSRVRMEG VWPSSPHLNV TPNLFSDPNN NSVLARSPIS GYLNVPSRSS DGPTCEHVED GKKIENSLDC WLFGVNLTNN CSNVIITTPS ERELRGPISS SVAPSGPKES IPAAACETER VQTPNYSLSN KGQKQIISEA SPNEWQNKQA TVPSMRTRTK VQMQGVAVGR AFDLTTLSGY DDLIEELEKL FEIRGELHSQ DKWAVTFTDD ENDMMLVGDD PWPEFCNMVK RIFICSREDL KKMKCCKLPA SSSEVEEVLL SPDSQNRDET QQSHMP // ID A0A0B2Q7B5_GLYSO Unreviewed; 589 AA. AC A0A0B2Q7B5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_011614 {ECO:0000313|EMBL:KHN17140.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN17140.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN17140.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN17140.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660427; KHN17140.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 589 AA; 64587 MW; EA07959E452B2772 CRC64; MVQMPPLNTK VFYFPQGHAE HAHGKVEYFG KNHQTRVPPL IPCRLSAMKY MADPDTDEVY VKMRLTPLRE HELLDSQDDC FLGNTNSGGV ENQEKPPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI IAKDMHGQCW KFRHIYRGTP RRHLLTTGWS NFVNQKRLVA GDSIVFLRAE NGDLCVGIRR AKKGIGGGTE FSSGWNNPLF GGGGGFLCGS ESSFVSGAKS GGDHEIVGRV APESVVEAVT CAVNGRPFEV VYYPRASSPE FCVKASVVKA AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI RWPDSPWRLL QVVWDEPDLL QNVKCVNPWL VELVSNMPTF NLSAYSPPRK KQRFLQDPYF QVINQLPMPS FSSNLLNYTN SLCTIQDSNS SGGIQGARHA QFGLSPSDFP FNKLPADMLL GGFSRLDHAA AQPIRPPCGT YKNNTTTKAN VGISCLLTVG NPGQNFKESN ETKAPHILLF GKLIQTEQKS SNTSSANTNG NSVSEGNSHK TSNASDGLGS GLHQGSPIEN NSDGGSPWYK DQHKSDLGTD NVNTLCIAL // ID A0A0B2Q8P5_GLYSO Unreviewed; 420 AA. AC A0A0B2Q8P5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor NGA1 {ECO:0000313|EMBL:KHN16393.1}; GN ORFNames=glysoja_033797 {ECO:0000313|EMBL:KHN16393.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN16393.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN16393.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN16393.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660483; KHN16393.1; -; Genomic_DNA. DR SMR; A0A0B2Q8P5; -. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 193 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 193 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 47128 MW; 812C55186DC0D646 CRC64; MELMQQVKGN YSDSREEEEE EEAAAITRES ESSRLHQQDT ASNFGKKLDL MDLSLGSSKE EEEEGNLQQG GGGVVHHAHQ VVEKEHMFEK VATPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKVWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGLGDL YRHRLYIDWK RRPDHAHAHP PHHHDPLFLP SIRLYSLPPT MPPRYHHDHH FHHHLNYNNL FTFQQHQYQQ LGAATTTHHN NYGYQNSGSG SLYYLRSSMS MGGGDQNLQG RGSNIVPMII DSVPVNVAHH NNNRHGNGGI TSGGTNCSGK RLRLFGVNME CASSAEDSKE LSSGSAAHVT TAASSSSLHH QRLRVPVPVP LEDPLSSSAA AAARFGDHKG ASTGTSLLFD LDPSLQYHRH // ID A0A0B2Q8V0_GLYSO Unreviewed; 641 AA. AC A0A0B2Q8V0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_041245 {ECO:0000313|EMBL:KHN16369.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN16369.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN16369.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN16369.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660484; KHN16369.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 530 611 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 641 AA; 71421 MW; DE09150BA4D2EA58 CRC64; MEQLEASTNQ ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESNQDEPMN PDPCTAEPPR APVHSFSKVL TASDTSTHGG FSVLRKHAME CLPALDMSQP TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIISVNKY LEAMNRFSVG MRLKMRFEGD DSAETDKRFS GTIVGVEDIS PHWVNSKWRS LKVQWDEPAA VPRPDRVSPW EIEPFVASAS TPSVQPTMVK TKRPRPPSET PDVDTTSAAS VFWDAGLQQA DMAQKNVLAE SKRNDSTGTW HHMQTDMNSK SNSGNAMLRN QTEGSWLSSP HSSCPSHLFQ DATDDSKSVS AWPVSKPHSS RLNNDHVLDQ VDKESKVETA TSYRLFGIDL IDHSRNSPSV EKASAQAGNA PKVTTEGCTS TLTRTDAGHL SDVPMASSKE RKQEQQQVSP KETQSKQICR SRTKVQMQGV AVGRAVDLTM LDGYDQLINE LEEMFDIKGQ LQHRNKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS SQDVKKMSCG SKLPISSVED GTVISSDTTE T // ID A0A0B2QA25_GLYSO Unreviewed; 851 AA. AC A0A0B2QA25; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_002980 {ECO:0000313|EMBL:KHN16883.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN16883.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN16883.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN16883.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660446; KHN16883.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 727 809 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 94422 MW; 4E67025FF19B19C3 CRC64; MATSEVSIKG NSVNGKGDNS SGDARNSGGE AQNASSSSSS ARDAEAALYR ELWHACAGPL VTVPRERERV FYFPQGHIEQ VEASTNQVAE QHMPVYDLPP KILCRVINVM LKAEPDTDEV FAQVTLLPEP NQDENAVEKE GPPAPPPRFH VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSKQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAILTGTMF TVYYKPRTSP AEFIVPYDQY MESLKNNYTI GMRFKMRFEG EEAPEQRFTG TIVGIEDADT KRWPKSKWRS LKVRWDETSN IPRPERVSQW KIEPALAPLA LNPLPMPRPK RPRSNVVPSS PDSSVLTREA SKVSVDPLPT SGFQRVLQGQ ELSTLRGNFA ESNESDTAEK SGVWPPATDD EKIDVSTSRR YGSDSWMSMG RHEPTYPDLL SGFGAHGDHS SHPSFVDQNG PVANLSRKHL LDREGKHNVL SPWPGVPSSL SLNLLDSNLK GSAQGGDTAY QVRGNLRYSS AFGEYPVLHG HKVEHSHRSF LMPPPPSTQY ESPRSRELLS KPISGKPCEV SKLKDSDCKL FGISLLSSRP IASEPSLSQR NVTSESVGHM HTASHHQRAI ENDQKSEHSR GSKPADGLLI DDHEKVLQTS QPHLKDVQAK SHSGSARSCT KVHKKGIALG RSVDLTKFSD YGELITELDQ LFEFGGELTS PQKDWLIVYT DNEGDMMLVG DDPWQEFVAM VRKIYIYPKE EIQKMSPGTL SSKNEENQSA SEGAADAQEI ECQLNHSSSD T // ID A0A0B2QBF3_GLYSO Unreviewed; 982 AA. AC A0A0B2QBF3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_036120 {ECO:0000313|EMBL:KHN18941.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN18941.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN18941.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN18941.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN659549; KHN18941.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006952; P:defense response; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR003191; Guanylate-bd_C. DR InterPro; IPR004326; Mlo. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF02841; GBP_C; 1. DR Pfam; PF03094; Mlo; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF48340; SSF48340; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 982 AA; 109748 MW; 4DB9EBA060093096 CRC64; MGLIDLNTTE DDEAAPLSAS SSHSGISTSA STLVVSPPPS VCLELWHACA GPLISLPKRG SVVVYLPQGH FEHVQDFPVN AFDIPPHVFC RVLDVKLHAE EGSDEVYCQV LLVPESEQVE HSLREGEIVA DGEEEDTGAM VKSTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGND GELRLGIRRA AQLKWAGSFA VPSGQQLNPA TLMDVVNALS TRCAFSVCYN PRFSSSEFII PVHKFLESLD CSYSVGMRFR MRFETEDAAD RRFTGLIAGI SDVDPVRWLG SKWRCLLVRW DDIEAARHNR VSPWEIEPSG SASNSSNLMA AGLKRNRIEM TSAKLEFPNP NGIQTSDFGE SLRFRKVLQG QEILGVNTPP FDGINAQSPW LYELGRCYPG SNCSGIPPTG NNIRVPHPAS DFSCNGIGFS ESFRFQKVLQ GQEILPSQPY GRALSIEEAR ANGRYGFYDG CQLLNSRNGW SAQMHDNASH LHASVTPAQV SSPSSVLMFQ QAVNPVSNCD YSINKCNKEM EGRIHYQGLY TSEMKGRTLA SSPSDDLIVS RRAPEGASSI GMFDVHNQLG SSQLHESVSA LRSSQKLVSS CKSSCRLFGF SLTEDTHVAN EEVSASTITL PLSSGPSFTR LVEDEFHPGH SHPSKAVGSN CTKYFKRKRR QSLSEALEKI RTELMLLGFT SLLLTVSEKS IANICIPKGA GETLIPCASI TFDDAKKQNV QSREGVREQQ YFIFYLARCH VVSSFLTFGL GLAKIRRSES WEGETRTLEY QFAYDPRRYQ LTGQTPFGKR HLNYWSNNSV MYWPVCLVRQ FYRSVPRVDY FTLRHGFIMD YKKNAYIEAD LQCSNAVQSM EKRLRAACNA SDSKIDNVAK VLDALLCEYE KSIQAPGKWQ KLAVFLQQRF VFRYCFQLFL FF // ID A0A0B2QCB4_GLYSO Unreviewed; 858 AA. AC A0A0B2QCB4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_027005 {ECO:0000313|EMBL:KHN17462.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN17462.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN17462.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN17462.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660270; KHN17462.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 734 816 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 858 AA; 94845 MW; FA2720F21E1CB705 CRC64; MATSEVSIKG NSVNGKGDNS SGGYTNDVRN GSGGGEARNS SSSSSSARDA EAALYRELWH ACAGPLVTVP REGERVFYFP QGHIEQVEAS TNQVAEQHMP VYDLPPKILC RVINVMLKAE PDTDEVFAQV TLLPEPNQDE NAVEKEGPPA APPRFHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MTKQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI LTGTMFTVYY KPRTSPAEFI VPYDQYMESL KNNYTIGMRF KMRFEGEEAP EQRFTGTIVG IEDADTKRWP KSKWRSLKVR WDETSNIPRP ERVSQWKIEP ALAPPALNPL PMPRPKRPRS NVVPSSPDSS VLTREASSKV SVDPLPTSGF QRVLQGQELS TLRGNFAESN ESDTVEKSAV WPPVADDEKI DVSTSRRYGS DSWMSMGRHE LTYPDLLSGF GTHGDHSSHP SFVDQNGPVA NVGRKHLLDC EGKHNVLSPW SGVPSSLSLN LLDSNTKGSA QGGDTTYQVR GNLRYSSAFG EYPMLHGHKV EHSHGNFLMP PPPSTPYESP RSRELLPKPI SGKPCEVSKP KDSDCKLFGI SLLSSPIAPE PSVSQRNVPS EPVGHMHTTS HQQRAFDNDQ KSEHSRGGSK PADGLLIDDH EKVLQTSQTH LKDIQAKSHS GSARSCTKVH KKGIALGRSV DLTKFSDYGE LIAELDQLFE FGGLLTSPQK DWLIVYTDNE GDMMLVGDDP WQEFVAMVRK IYIYPKEEIQ KMSPGTLSSK NEENQSASEG ATDTQEIKCQ LNNSASDT // ID A0A0B2QCM8_GLYSO Unreviewed; 1189 AA. AC A0A0B2QCM8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_005940 {ECO:0000313|EMBL:KHN17743.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN17743.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN17743.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN17743.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN660247; KHN17743.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 178 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1061 1154 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 178 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 546 584 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1189 AA; 132764 MW; 67B260D88ABC8173 CRC64; MATKFYFGLL DIISFTRFPF FADADGFISA QSAVGFGVLI CATTRIPLLG VIMKAPSNGY LPNSGEGERK TMNSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMQ KEADFIPSYP NLPSKLICML HNVALHADPE TDEVYAQMTL QPVNKYEKEA ILASDMGLKQ NRQPTEFFCK TLTASDTSTH GGFSVPRRAA EKILPPLDYS MQPPAQELVA KDLHDNTWAF RHIYRGQPKR HLLTTGWSVF VSTKRLFAGD SVLFIRDEKQ HLLLGIRRAN RQQPALSSSV ISSDSMHIGI LAAAAHAAAN NSPFTIFYNP RASPSEFVVP LAKYNKAMYT QVSLGMRFRM MFETEESGVR GYMGTITGIS DLDPVRWKSS QWRNIQVGWD ESTAGERPRR VSIWEIEPVV TPFYICPPPF FRPKFPRQPG MPDDESDMEN AFKRAVPWLG DDFGMKDASS SIFPGFSLMQ WMSMQQNNQL SAAQSGCFPS MLSSNTLQGN LSTDDPSKLL SFQAPVLSTP SLQLNKPNLP NQINQLQQSP VSWPQQQQLQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQLQS LLQIPMNQLQ QQRQQQLPEP QNLPLLQQLP QHLGQQPQKQ QQSSQHATIM NNGVVASNQI TNQFAQQPMA YGQLQQQQLL SGGIQPQQGI QSATKNTFPL TSLPQDSQFQ QQIDQQASLL QRQQQQQQTQ LQQSPLQLLQ QNLPQRALQQ PPATQMLQQN PSEQQLHLQL LQKLQQQQQQ QLLSTSTPLL QSQLLQQQNT HQQNQQSLQP LPPISQHQPQ QLGNNAFSTE KLLSSNNFSS SLTQSQQLSM NQPQNTQKSH TITRAPSTLT DGDAPSCSTS PSTNNCQVSP PNLLKRNQQI PATLGGGLIV EPTSNLIQEL HSKPDTQIKQ ELLNVKGPDQ LKYKGTITDP LEASSSGTSY CLDPGNVQQN LPLSNFCMER DVQSHPRNSL PFDSNLDGLT PDTMLLRGYD SQKDLQNLLS NYASAPRDIE TELSTADISS QSFGVPNMPF KPGCSSDVGI NDTGVLNNNN GLRTNQTPRM RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ LEDPLRTDWK LVYVDHENDI LLVGDDPWDE FVSCVQSIKI LSSAEVQQMS LDGDLGGNVP IPNQACSGTD SGNAWRGQYE DNSAASFNR // ID A0A0B2QFV3_GLYSO Unreviewed; 908 AA. AC A0A0B2QFV3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription repressor VAL1 {ECO:0000313|EMBL:KHN18657.1}; GN ORFNames=glysoja_033764 {ECO:0000313|EMBL:KHN18657.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN18657.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN18657.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN18657.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN659669; KHN18657.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 597 647 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100423 MW; 10AF96E3310AF18D CRC64; MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDPLSA YENSVFCNKF HCQQTGWREC NFCNKPIHCG CIVSRSLFEY LDFGGIGCVS CVNTTQLSMM RNMENPNVTV LSIKNNAGDR HSAHFDGRLL VGGVDEGKLM QFCKIIEASE SSRWNHAQRD GIIAHRGQKN QEAKSSFREV EIGFSNVMNP SVQSLTFATL ENNRSTWEIK NMHESNTKPS LSMYLGNASG NNSVPPSAGE AVEGRLDGKT SPPFQGSRSI FPKPLKNGLT MNMETNKGTM SQSRVARPPA DGRGKNQLLP RYWPRITDEE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQAM QLCAGDTVTF SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNLAKGTVSS GTENLPSGSN NADLLHSLTG NVECHLNGHT EHLHLGTGTA GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI DNEDAMELKL TWEEAQDLLR PPPSVKPSIV TIEDQVIEEY DEPPVFGKRT IFSACSSGGK EQWAQCDDCS KWRKLPVDAL LPPKWTCCEN VWDSSRCSCS APEELSSREI ENLLKNNKDF KKRRIVESSK SIQEHEPSGL DALASAAVLG ENLIDTAESS AGVTTKHPRH RPGCSCIVCI QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADAAQKDQTL PKDELDTNGA SRDDTSQLEK EAGLKSQHEV GGSSAGQIDL NSHPNREDMQ VETTGLNMSS HLEPATNHTV GEFMNQNGLR NFNNEVQTGQ NSSLHTPKSN GEGQRYFSDG RCFASIMWNQ ERKDEVHSQT NQSQNNLS // ID A0A0B2QI83_GLYSO Unreviewed; 600 AA. AC A0A0B2QI83; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN21020.1}; GN ORFNames=glysoja_009328 {ECO:0000313|EMBL:KHN21020.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN21020.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN21020.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN21020.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN658118; KHN21020.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 480 576 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 480 576 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 67239 MW; 0556FF609D880AE8 CRC64; MGCDCGGKLN VRKPHFYEVY SSAFSSHRLR LPDGFVCCME GRAYGSVSLT GPSGNIWTVQ LIKQDNDLFF HHGWSTFVVD HRLECGELLV FRYEGHLHFT VQIFDKDACE KEAAFHSECS QSSSDFDNIK GQKRDRKENS SLHIVVDGVP KKMRGSTNEN QELELGVGKE LLLYDVVRPI SMFRENEETS KTCSANDVPV PFHMENSNED EEADILYRSG NDDHHYILSG VSLSNVSAHD EKKVAQSFIS SFPYFVRIMK SFNVSGSYTL NIPYQFSMAH LPNCKIKIIL HNLKGEHWTV NSVPTTRVHT SHTLCGGWMA FIRGNNIKVG DICIFELVRE CELRVRIAEV GKDGRDCQVG NVAMTRPSAG HAVSSKCMSM NPKVNSKCIR KVDLSDKKWS KIGQETILSI DLKKSSRASN TSKKMGLCPQ SKAAHKKLAA PRRHRVEDEL SSQAKAGLRM LFALDEQRVA QAFSSPFPSF VKIMKKFNVS GSYTLKIPYQ FSAAHLPTYK TEVTLRNSRG GCWTVNSVPD AKGRTVHTFC GGWMAFVRDN DINFGDTCIF ELVAQCEMQV YISGVGKEGL DHQNGHLKLT NRLANVPSTC // ID A0A0B2QLE6_GLYSO Unreviewed; 445 AA. AC A0A0B2QLE6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein REM16 {ECO:0000313|EMBL:KHN21019.1}; GN ORFNames=glysoja_009327 {ECO:0000313|EMBL:KHN21019.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN21019.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN21019.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN21019.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN658118; KHN21019.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 347 404 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 347 404 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 445 AA; 49788 MW; 0361323172BE0A31 CRC64; MVGQNCDGCR SWEEDIYWSH FQFLHFVQFL HADYDQHLAL PKTFSDNLKK KLPENVTLKG PGGVMWNIGM TTRDDTLYFG HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGWSLCE KAGSYFVRKC GHTEIDHAGG SLNKKRDTDN DSLEEGNIPS NAGVECALHE KSAHVNGTKE PIDVPPETPP TENTFNAGVE SSGVEQFTPD GGVTLAAVPS ETANGKRIRN IVSAVKHVHT KRKGRPAKWH VRERTLDWVA ALEAEPVSAS RSGTYEVYKS NRRPVTDDET RKIESLAKAA CTDDSIYVVM KPTHVYKRFF VSIRGTWIGK HISPSSQDVI LRMGKGEWIA RYSYNNIRNN GGLTGGWKHF SLDSNLEEGD ACVFKPAGQI NNTFVIDMSI FRVVPETVPL TPMSRGTRTG TRTGTGRRGR KPATMKSIQT QLSSP // ID A0A0B2QLH3_GLYSO Unreviewed; 232 AA. AC A0A0B2QLH3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN22310.1}; GN ORFNames=glysoja_022066 {ECO:0000313|EMBL:KHN22310.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN22310.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN22310.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN22310.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN657414; KHN22310.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 232 AA; 26278 MW; 80AE7708B0AE20D3 CRC64; MVAAIAYEES RRKRVEENKK RMEALNLPLL SQALQKSSPS PKSSPLKQVK HRAIQKEVVV VRRSSRVANL PSPVYKEIVI DRVTMPRRSL CRSYDKYRDY ANRVYASDEA REEALEKAEK LMSGLESEYP AFIKSMLQSH VSGGFWLGLP VHFCKSNLPK KDEVVTLIDE DGTEYSTIYL AGKTGLSGGW RGFAIAHDLA DGDALIFQLI KRTTFKVYIV RAICPPDDKQ LE // ID A0A0B2QMU7_GLYSO Unreviewed; 802 AA. AC A0A0B2QMU7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_021114 {ECO:0000313|EMBL:KHN21534.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN21534.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN21534.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN21534.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN657816; KHN21534.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 673 755 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 802 AA; 89375 MW; 03572AF1AAE6F51B CRC64; MEIDLNDDAV TSEAEKSASC NEECEKGAAF ALSSSTCSSS GSSSARVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQASSFSPFS PMEMPTYDLQ PQIFSRVVNI QLLANKENDE VYTQVTLLPR AEYLEGKELE ELGTYEEGNE TTPTKSTPHM FRKTLTTSDT NTHGGFFVPR RAVEDCFPRL DYKQQRPSQE LVAKDLYGVE WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIVGSQSYY PNFLSSVANA ISAKSMFHVF YSPRASHADF VVPYQKYIKS IKNPVTIGTR FKMKFEMDES PERRCTSGIV TGMSDLDPYK WPKSKWRCLM VRWDEDIEIS HQDRVSPWEI DPSSSLPPLS IQSSRRLKKL RPGLQAATPS HLTTAGGSGF MDSEESVRSS KVLQGQENTG FMSLYYGCDK VTKQPEFEIR SPSHPNLAST GVRKISAAEF MRVHPSSFAG FSETNMFPRV LQGQEICPFR SLTGKADLNF GSWGKPNVSY SNNNLHQATK PSFHSLGPEV IQTAYFPYGD IHNAGQGSSI LCSKPTNFQR ENIPFNTPST QSGIMRNEVG RSDITIPNEQ KLQDNISGTA SLGANMRIPK DDNFKGQVKA CKLFGISLSG ETTAQNLQNS AKRSCTKVHK QGSLVGRAID LSRLSSYNDL LIELERLFSM EGLLIDPNKG WRILYTDSEN DIMVVGDDPW HEFCDVVSKI HIHTQDEVEK MTIGMMINDD TQSCLEQAPV TMEASKSSSV GQPDSSPTVV RM // ID A0A0B2QNI9_GLYSO Unreviewed; 437 AA. AC A0A0B2QNI9; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN23030.1}; GN ORFNames=glysoja_049311 {ECO:0000313|EMBL:KHN23030.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN23030.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN23030.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN23030.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN656667; KHN23030.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 300 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 300 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 437 AA; 49583 MW; BAF7953DB050A83A CRC64; MPRPCFDKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWPI GLKKADNRIW FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAMRN HNEGSCFANY HHIFDEMEDV DSLGLSDLSP QYLTPGALQS KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL NRVNWGDGGS AFSLKDANSQ GNQSTRDIGV QFNAVEFKRS TEELKLRYSN SNEEAVNKTA KKKRKSEPYG EEPSGENEEE AEMRYRFYES ASARKRTVTA EERERAINAS KTFEPTNPFC RVVLRPSYLY RGCIMYLPST FAEKNLNGVS GFIKLQLSNG RQWSVRCLYR GGRAKLSQGW FEFTVENNLG EGDVCVFELL RMKEVVLQVT VFRVTEDAGL LNQLPMQQQQ QSPNISHTKL LNPHLQHRIS TTKLIRN // ID A0A0B2QQS6_GLYSO Unreviewed; 791 AA. AC A0A0B2QQS6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_008964 {ECO:0000313|EMBL:KHN22052.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN22052.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN22052.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN22052.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN657550; KHN22052.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 747 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 88018 MW; 4397815C0AA3DFE5 CRC64; MEIDLNHEVT EVEKNAFCDR ECEKGVGVTC WSSSTCSSST SSSSALVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQVASFSPFT PLEIPTYDLQ PQIFCRVVNV QLLANKENDE VYTQVTLLPQ AELEGMYLEG KELEELGAEE EGDDRSPTKS TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HDVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRGENGELR LGIRRAVRPR NDLPESVIGS QNCYPNVLSS VANAISTKSK FHVFYSPRAS QADFVVPYQK YVKSIKNPVS IGTRFKMRFE MDESQERRCC SGMLIGTSDL DPCRWPKSKW RCLMVRWDED IETNHKDRVS PWEIDPSAPL PPLSIQSSPR LKKLRTGLQV ASPSHLITAR GRGLIDFEES VRSPKVLQGQ ENAGFGSLYY GCDTVTKPPG FEMSSQSHPN LGSAEVRKIT SSELSSVHPF SYAGFVETNR FPRVLQGQEI CPLKSLTGKV DMNLGAWGMP NLSCTTFNLH QATKPSFQLS LFPYGDIHQA SQASLFCSKS TTFQRENVPF NKPSTQAGII VNEVGRSDLP NDHKLQGNNI SAAGNMGVSI DNNVQGKVNA CKLFGFSLSG ETTTQNLQNS AKRSCTKVHK QGSLVGRAID LSRLSGYNDL LSELERLFSM EGLLKDPDKG WKILYTDSEN DIMVVGDDPW HEFCDVVSKI HIYTQEEVEK MTIEMISDDT HSCLEEAPVI MEASKSSSVG QPDYSPTAVR V // ID A0A0B2QSJ7_GLYSO Unreviewed; 122 AA. AC A0A0B2QSJ7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KHN22773.1}; GN ORFNames=glysoja_048959 {ECO:0000313|EMBL:KHN22773.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN22773.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN22773.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN22773.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN656901; KHN22773.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 13979 MW; 6B2F669A2BDFFEB8 CRC64; MHEASGNQLV DNNHNNTYGG PQVRIFREQL TKYKASGSQL SLPPGFAKFL WESKFQTLSL INAEGLEEIC HQRIHTKETK SIKTGRCWKK FCSKSRFKQG DTIKFEFGDK NENVAKVTKE IV // ID A0A0B2QTH0_GLYSO Unreviewed; 911 AA. AC A0A0B2QTH0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription repressor VAL1 {ECO:0000313|EMBL:KHN24735.1}; GN ORFNames=glysoja_040664 {ECO:0000313|EMBL:KHN24735.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN24735.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN24735.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN24735.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN655086; KHN24735.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 597 647 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100733 MW; 95117EC682E44939 CRC64; MGSDICIVNG LGTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDRLSA YENSVFCNKF HRQQTGWREC NFCNKPIHSG CIVSRSLFGY LDFGGIGCVS CVNTTQLSMM RNTENPNVSV SSIKNNASDR HSAHFDGRLL VGGVDEGKLM QFCKIIEASE SSHWNHAQSD GIIAHHGQNN QEAKCSFREG DIGFSNVRKP SVQSLTFATL ENNRSTWEIK NMHESNAQPS FSMYLGNASG NDSVPPSAGE AVEGRLEGKT SPPFQRSRPI CPKPLKSGLT MNVETDKGAI SQSRVARPPA DGRGKNQLLP RYWPRITDQE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQAM QLCAGDTVTF SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNSAKGTISS GTENLPSGSN HANLLHSLTG NVETHLNGHT EHLHLGTGTA GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI DNEDAMELKL TWEEAQDLLR PPPSVKPNIV TIEDQVFEEY DEPPVFGKRT IFSACSSGGK EQWAQCDDCS KWRKLPVDAL LPPKWTCSEN VWDSSRCSCS VPEELSSKEL ENLLKTNKDF KKRRIAESSK SIQEHEASGL DALASAAVLG ENLVDTAESS AGATTKHPRH RPGCSCIVCI QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADTAQKDQTL LKDEPDTNGA PRDDTSRLEK EVGLNKSQHQ VGESSTGQID LNSHPNREDM QVETTGLNMS SHLEPATNHT VGEFMDKNDL RRSFNNEVQT GQNSSLHTPP QSSGEGQRYF SDGRCFASIV WNQERKDEVH SQPNQSQNNL S // ID A0A0B2QTT3_GLYSO Unreviewed; 799 AA. AC A0A0B2QTT3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_042486 {ECO:0000313|EMBL:KHN25051.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN25051.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN25051.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN25051.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN654689; KHN25051.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 754 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 799 AA; 88732 MW; 65661892F8B11C96 CRC64; MEIDLNDAVT SEAEKSASCN GECEKGAALS SPTCSSSGSS STRVSSSYIE LWHACAGPLT SLPKKGNVVV YFPQGHLEQA ASFSPFSPME MPTYDLQPQI FCRVVNIQLL ANKENDEVYT QVTLLPQAEL AGMYMEGKEL EKLGADEEGN ETTPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKKQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV FYSPRASHAD FAVPYQKYIK SIKNPVTIGT RFKMKFEMDE SPERRCTSGI VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE VDPSASLPPL SIQSSRRLKK LRPGLLAAAP NHLTTVGSSG FMDSEESVRS SKVLQGQENT GFMSLYYGCD TVTKQPEFEI RSPSHPNLAS TGVRKIAAAE FMRVHPSSYA GFTETNMFPR VLQGQEICPF RSLAGKVDLN FGSWGKPNVS YTNYNLHQAT KPNFHSFGPE VVQTAYFPYG DIHKAGQGSS MLCSNPTNFQ REDIPFNTPS IQSGITIPNE QKLQDNISGA ASLGANMRIP NDDNFKGKVN ACKLFGFPLS RETTAQNLQN SSKRSCTKVH KQGSLVGRAI DLSRLSSYND LLIELERLFS MEGLLIDPNK GWRILYTDSE NDIMVVGDDP WHLPFVCSEF CDVVSKIHIH TQEEVEKMTI GMMINDDSQS CLEQAPVMVE ASKSSSVGQP DSSPTVVRM // ID A0A0B2QZA6_GLYSO Unreviewed; 726 AA. AC A0A0B2QZA6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=B3 domain-containing transcription factor ABI3 {ECO:0000313|EMBL:KHN24997.1}; GN ORFNames=glysoja_027111 {ECO:0000313|EMBL:KHN24997.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN24997.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN24997.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN24997.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN654844; KHN24997.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 572 674 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 572 674 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 726 AA; 80062 MW; 97EDCB9E59AB1AF3 CRC64; MECEVELQGG DLHAGEVTDP NPIGFGNMED EHTLAVAERE MWLNSDQDEF LGVNDASMFY ADFPPLPDFP CMSSSSSSSS ATPLPVKTMT CSTTTTTSSS SSSSSWAMLK SDAEEDAEKN HCNRYMHDQL DATLSSTASM EISQQQNPDP GLGGTVGECM DDVMDTFGYM ELLEANDFFD PASIFQNEGN ENPLEEFGTL EEHVPFHEEQ HAMVHHQQGQ AEEEDHQVPF CEEIQGDEEG GDGVGVDDEM SNVFLEWLKS NKDSVSANDL RNVKLKKATL ESAARRLGGG KEAMKQLLKL ILEWVQTSHL QNKRRKENNG SSISSVLQAQ FQDPSGQNNN QNTQSGSFAP ESNTCFNNQT PWLSSQTFAT DQAPLMVPPQ QFPQPMVGYV GDPYTSGAAS NNISATHNHN NSNPYQPGAE QYHMLESAHS WPHSLFNVAS NYSQSFGDNN GLNPHGGFGG GGYGNNQYPY QFFHGPGDRL MRLGPSATKE ARKKRMARQR RFLSHHRHHS GNHQNQGSDP HARMGGDNCN TALAAPHHAN PSANWMYWQA MIGGAADTEL GWKPEKNLRF LLQKVLKQSD VGSLGRIVLP KKEAETHLPE LEARDGISIT MEDIGTSRVW NMRYRYWPNN KSRMYLLENT GDFVRANGLQ EGDFIVIYSD VKCGKYMIRG VKVRQQGVKP ETKKAGKSQK NQHGTGTNAS STAGTAANNG TSSSPKTKSE KSSKLI // ID A0A0B2QZC5_GLYSO Unreviewed; 310 AA. AC A0A0B2QZC5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein REM21 {ECO:0000313|EMBL:KHN25329.1}; GN ORFNames=glysoja_010246 {ECO:0000313|EMBL:KHN25329.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN25329.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN25329.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN25329.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN654438; KHN25329.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 36350 MW; F5815B17F19A2446 CRC64; MSTGAQRYPD FFKVFLPERH SERMLIPNAF VRLPQLQGRI PEDVILRNAS GRVWHVKTRY VGEKLYFDDG WRAFHQENCL GQADFLVFKL ERRNEFVVLI LQLSTQCQKP LVKMEEEQAA TQLVEEPDSS SDDDDEESGE EFSAGFNLQS HHRRACKRET ASSSNPNAED PLPEYVFDPQ MCIHPENHFF KAKLYRTRPN ELHIPGNAIQ EFSLTLPEKI TLICCQPCQR KDIPMNELGD YHHNLTPIRI KYQEVTGRVC RWQDHRIYIK GWASFCRRNK IERNDTCFCE VISGEDQVVK TLRVHVARRR // ID A0A0B2QZW5_GLYSO Unreviewed; 439 AA. AC A0A0B2QZW5; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN25328.1}; GN ORFNames=glysoja_010245 {ECO:0000313|EMBL:KHN25328.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN25328.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN25328.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN25328.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN654438; KHN25328.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 439 AA; 49912 MW; 6CE231B683EF18A4 CRC64; MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELLPIVT LSVPDGSVWR VGLKKADNKY WFLDGWKEFV KHYSISIGYL LVFKYEGKSS FSVHIFNLAT SEINYQSATR SSNEGLHFTN RLKLFEEMED EDSIEISDSS PSHLAPSSLQ NQALTGSVDK MMPGKSYTPP ALQNLFNGSK LNSINWGEGG NAHSSRIANS LDNRLTRDIG LQFNAVEFKR STEELKLRAS MEERMKKTTR KKRKSDGQDP SAEHEEEVEM RLRFYESASA RKRTVTAEER ERAINAAKAF EPPNPFCRVV LRPSYLYRGC IMYLPSCFAE KHLNGVSGFI KLQISNGRQW PVRCLYRGGR AKLSQGWFEF SLENNLGEGD VCVFELLRMK EVVLQVTVFR VIEDVGLLSP PLQQNQNMSS AKMLNTPLQQ HLTSTKMVRN QQQGDLSGT // ID A0A0B2R097_GLYSO Unreviewed; 1225 AA. AC A0A0B2R097; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Ribosome biogenesis protein BMS1 like {ECO:0000313|EMBL:KHN25317.1}; GN ORFNames=glysoja_010234 {ECO:0000313|EMBL:KHN25317.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN25317.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN25317.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN25317.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN654438; KHN25317.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR007034; BMS1_TSR1_C. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR Pfam; PF04950; RIBIOP_C; 1. DR SMART; SM01019; B3; 1. DR SMART; SM01362; DUF663; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 924 1019 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 924 1019 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1225 AA; 139285 MW; 28EBA88D204871AA CRC64; MAVNDADQSN KAHRTRQSGA KTNKKKTKKK QKLNPDDVGG EDPKKQNPKA FAFSSSNKAK RLQSRAVEKE QRRLHVPVID RSYGEPAPYV VVVQGPPQVH IAGVGDYSLA GITALPDPCP LPSAAKKKGL RDKEKLFYAP MSGLGDLLYD KDAVYININD HLVQFSKVDD ENSAMTGKGK GSDVGEDLVK SLQNIKYSIN EKLENSFINI FGQKANVSSG ALGDAHGTNK NVEQNDKTEA LDKYQPGTGE DNNKTDLDVS ESSDRDEDDA TDSEASGSDE DEDAPNSNAR NGVHLQEHID FQDGRWRRRA IFGNDVDQND LMDSEGDEDG ATSNDDVESS EEEEEDGNDN DDTNEDDTGN VSKWKESLAE RTLSRKTPSL MQLVYGESTI NSTTINREND NSGDEESDDD FFKPIEEVKK LNMRDGLNDD GMFNTEDCAK CTQFVVQRWD ENDNEEIRNR FVSGNVAKAA LRNALPAANT EEDNDDVYAD FEDLETGEKH ENHRTDAAFA ATTHKGDDLE AEERRLKKLA LQEDTGNENE VKFHRGQANE SSYFDKLKEE IELQKQMNIA ELNDLDEATR LEIEGFQTGT YLRLEIRDVP CEMVEYFDPY HPILVGGIGI GEENVGYMQA RLKRHRWHKK VLKTRDPIIV SVGWRRYQTT PIYAIEDSNG RHRMLKYTPE HMHCLAMFWG PLAPPNTGVV AIQNLSNNQA TFRITATAVV LEFNHAARIV KKIKLVGYPC KIFKKTALIK DMFTSDLEVA RFEGAAIRTV SGIRGQVKKA AKEEIGNQAK RKGGQTKEGI ARCTFEDKIL MSDIVFLRAW TQVEVPQFYN PLTTALQPRD MTWKGMRTVA ELRREHNLPI PVNKDSLYKK IERKPRKFNP LVIPKSLQAS LPFASKPKDI SKRNKPLLEE RRGRGVVMEP RERKVHALVQ HLQLINSEKL IPNAFVRLPQ LQGRIPEDVI LRNASERAWH VKTRYVEEKL YFDDGWRAFH QENCLGQADF LVFKHERRNE FVVLILQLST QCQKPLVKME EEQAATQLVE EPDSSSDDDD EESGEEFSAG FNLQSHHRRA CKRETASSSN PNAEDPLPQY VFDPEICIHP ENHFFKAKLY RTRPNELHIP GNAIQEFSLT LPEKITLICC QPCQRKDIPM NELGDYHHNL TPIRIKYQEV TGIVCRWQDH RIYIKGWASF CRRNKIERND TCFCEVISGE DQVVKTLRVH VARRR // ID A0A0B2R2I4_GLYSO Unreviewed; 651 AA. AC A0A0B2R2I4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=glysoja_038863 {ECO:0000313|EMBL:KHN28241.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN28241.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN28241.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN28241.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN652923; KHN28241.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 110 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KHN28241.1}. SQ SEQUENCE 651 AA; 72412 MW; 7BDB94ED02FE2AC0 CRC64; LYTELWRACA GSFVYVPRVD DRVFYFPQGH LEQVAAYTQN QPDSHLEIPV YDLPSKILCK IMNVELKAEA YSDEVYAQVT LVPEVQKDNL CFEEEVNIDQ IPSRNAAYSF SKILTPSDTS THGGFSVPKK YADECFPPLD MTLQTPAQEI VAKDLNGFEW RFRHIYRGQP KRHLLTSGWS LFVNAKKLVA GDSCIFVRGE SGELRVGIRR AAENLSNISQ SSSLISGHSM QLGILTNASN AVGNRTMFLV YYRPWTNPFE FIVHLQTYLK STLQDYPIGT RVQMQHEVEE SLRRLAGTII GNEDIDSIRW PGSAWRRLKV QWDAIVEDKM HPERVCPWWI EPLESAKEKK QVPALPTKKK GHALLNQRSL PGISGFGKND VHQNSAGPSS QTRRADGDLQ GQDYSGLSPP QPLQRAPSTD IIRPSKVPIR GSRFGKENRN QHPFLKQDPL HKSLGRSMSL THEDLSITSS NLTSIGSESL GMPSTESRDE NDAPFGQPGS SSTFKLFGVN LIDSSPEIPS VNFVDLNKTS SLPSSPPMGV APGKTCKKCR CVNNRSCTKV LKLGNALGRA VDLARFNGYT ELIAELDSMF DFQGTLISGG SGWHVTCLDD EGDMMQLGDY PWQDFLGVVQ KMIICPKEGT DNLKPGSSAN P // ID A0A0B2R2Y4_GLYSO Unreviewed; 172 AA. AC A0A0B2R2Y4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Auxin response factor 17 {ECO:0000313|EMBL:KHN26232.1}; GN ORFNames=glysoja_030429 {ECO:0000313|EMBL:KHN26232.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN26232.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN26232.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN26232.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN654060; KHN26232.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR016161; Ald_DH/histidinol_DH. DR InterPro; IPR015590; Aldehyde_DH_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00171; Aldedh; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53720; SSF53720; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 75 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 75 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 172 AA; 19282 MW; 54883FA47934503D CRC64; MQDFSQQPPA QELIARDLHG NEWKFRHIFR GQPKRHLLTT GWSVFVTAKR LVVGDSMLFI WQGGNILTYE SVLGSRENFV EPTIVEISLD APVVKEELFG PVLYVMKFQT LEEAIALNNS VPQGLSISIF TQNLELYSSG SASSDTGMLT KLVIPETQVD MCPCVLQECL HP // ID A0A0B2R363_GLYSO Unreviewed; 332 AA. AC A0A0B2R363; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor FUS3 {ECO:0000313|EMBL:KHN28566.1}; GN ORFNames=glysoja_021387 {ECO:0000313|EMBL:KHN28566.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN28566.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN28566.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN28566.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN652608; KHN28566.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 144 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 37401 MW; 27F2CEEF1C6399B0 CRC64; MMMDQRQREK LLHKTEACAF VAGVVPELSL VTVPGNNTNN VNNNNNVVSH SQSNGSGRIQ ENNHHLGLVA AVTSAFGTVQ RKKRMARQRR STKPTSLMNH LNNHKHNKPR SLPSPSASSS YVPLSSATLQ PAREIDQRRL RFLFQKELKN SDVSSLRRMI LPKKAAEAFL PALESKEGIV ISMDDIDGLH VWSFKYRFWP NNNSRMYVLE NTGDFVNTHG LRFGDSIMVY QDSENNNYVI QAKKASDQDE FMEETSDTIN DIFLNDYEVN KPGCFNVTNP AVNDTGMSFI YETTFSNDSP LDFLGGSMTN FSRIGPVETF GSVENLSLDD FY // ID A0A0B2R3K1_GLYSO Unreviewed; 472 AA. AC A0A0B2R3K1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN26467.1}; GN ORFNames=glysoja_035802 {ECO:0000313|EMBL:KHN26467.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN26467.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN26467.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN26467.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN653868; KHN26467.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 415 442 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 472 AA; 53483 MW; 3EEA00C75EFDA462 CRC64; MVVIDEKNRV IRRDMVELSQ HDQSVTVAYY GEELHGGVPL PRFSRMSPLN TDRQNKGMEN KYKLLNSPVK QATPAEAQKF ASSIKVATEG TSSRGQAMSS AVLQAEEVQS NLEREFPSFV KSLVRSHVAS CFWMGLPVSF CKRHLPDKDT TFILEDESGK EYMTKYIACK TGLSAGWRQF SAVHKLHEGD VVVFQLVEPT KFKVYIIRAN NTRELDGAFL SLDSNDNADS DDVACNNSKR KHGKSVQQDV QTKKKASASR LRPKARPSVE QSENDSEEAL SEVMEGFKML EFNDVKGFEN FSIIVDGVPI DAEFSTEVRN KYYRLCCSQH AFLHENLIKG MNYKLIAGII LETVNIADAI EVSVICTPRA EFSNWDKTLL AFEHLGMDVE FLRVRLRRLA RIAYEKDDAS ETKKHLAYRN EYSRADDEIK NMEAKLEELK GACNGFGAYL ESLKCRAESN HIKFQKEVVA PW // ID A0A0B2R5L8_GLYSO Unreviewed; 248 AA. AC A0A0B2R5L8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=AP2/ERF and B3 domain-containing transcription factor {ECO:0000313|EMBL:KHN27132.1}; GN ORFNames=glysoja_032900 {ECO:0000313|EMBL:KHN27132.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN27132.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN27132.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN27132.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN653520; KHN27132.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 86 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28131 MW; 28312AF43FA30376 CRC64; MAYDSASIKL RSGECHRNFP WNDQTVQEPQ FQSHYSAETV LNMIRDGTYP SKFATFLKTR QTQKGVAKHI GLKGDDEEQF CCTQLFQKEL TPSDVGKLNR LVIPKKHAVS YFPYVGGSAD ESGSVDVEAV FYDKLMRLWK FRYCYWKSSQ SYVFTRGWNR FVKDKKLKAK DVIAFFTWGK SGGEGETFAL IDVIYNNNAE EDSKGDTKQV LGNQLQLAGS EEGEDEDGNI GKDFNAQKGL RLFGVCIT // ID A0A0B2R9S7_GLYSO Unreviewed; 843 AA. AC A0A0B2R9S7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_012911 {ECO:0000313|EMBL:KHN31261.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN31261.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN31261.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN31261.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN651162; KHN31261.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 795 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93885 MW; FDD8EF6301C19837 CRC64; MTSLEVTMKG NCLNHNDGGA TEPHSPSTAK DAEAALFREL WHACAGPLVT VPRERERVFY FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELVAKDLHAN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AISTGTIFTV YYKPRTSPAE FIVPYDQYME SLKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPKR WRDSKWRCLK VRWDETSNTP RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAVPSSPD SSVLTREASS KVSIDPSPAN GFPRVLQGQE FSTLRGNFAE SNESDTAEKS VVWPPAAVDD EKMDVSTSRR YGSESWMSMG RNEPTYSDLL SGFGASGDPS HLSLKDQMSP AYSARKQSLD HEGKLHMPHP WPVMPSSLSL SILDSNTKGP AHGGDTTYKA RGNLRYSAFG EYPALHGHKV EHSHGNLMPP PPALLTQYQS PCSRELMSKQ VSAKTCEAVK PKDGDCKLFG FSLISGPTLP EPSLSQRNVS EAADQMHLTA HQQRTSENDE KLDHSKGSRP VDDIVVDDQD RPLRTSQLHT KDVQAKPLSG SARSCTKVHK KGIALGRSVD LTKYSGYDEL VAELDQLFEF GGELLSTKKD WLIVFTDNEG DMMLVGDDPW QEFCAMVRKI YIYPKEEIQK MSPGTLSSKN EENHSVTASE GADTKDVKCQ PHQKFNSENG LDA // ID A0A0B2REX2_GLYSO Unreviewed; 425 AA. AC A0A0B2REX2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN30413.1}; GN ORFNames=glysoja_033151 {ECO:0000313|EMBL:KHN30413.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN30413.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN30413.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN30413.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN651768; KHN30413.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 368 402 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 425 AA; 47973 MW; 9F1DB7F11CCD5318 CRC64; MAEKERWPVC SFMGDGEAVA VPHSKLKKKG RPPIPKKENV FKELNGVDDD PRNPQKRRKG EGTGMGIVID APPCNTQAYQ RAKEVQANLS PQFPTFLKSM LPSHVAGGFW LGLPKKFCNL YMPKLDTTIA LEDETGQLYE TKYLAQKAGL SAGWRGFSIA HNLLEMDVLI FHLVQPSKFR VYIIRSQESD ELDGALVLLK SDGCRKQSDD ANDHKNSGMI FCANVSHPDQ VENTSEDFDS GIRFSESVVS FKQVTGVENF RIVVNGLVID SELSKYIRNK YYELCCSQRS FLHDHLLEGL NTKLAAGIIS ETINIADAIK ASNLTTSPDS LVIWDKTLKA FETMGMNVSF LLIRLDQLMK LALKLKRYKE VTLERDHAAE ELKALEAKLL EVKQTINRLD QENDIQHMHP ERLETMFQEL ADAPW // ID A0A0B2RFD0_GLYSO Unreviewed; 723 AA. AC A0A0B2RFD0; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription repressor VAL1 {ECO:0000313|EMBL:KHN30598.1}; GN ORFNames=glysoja_039779 {ECO:0000313|EMBL:KHN30598.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN30598.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN30598.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN30598.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN651589; KHN30598.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 317 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 80465 MW; 9B8023C353CA867A CRC64; MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLYQTGWREC SFCNKTVHCG CIVSSSMFEY LDYGGIGCAT CVKTSQLNLI RDTKNTIGSV RSIKNNARNR HTEHIDGRLL VDSAGKGNLM LLRRDVEASE SIRWPRAERD GIDSCIGPNR QEDRRFSNVV KLSGHSLNFT TLDHNRPTWE TQTMHKSSSL NMSLGTSSGN SVQPSALDIA ERRLEDKASF CPFPQGQRSL SISKSLMDGI TMNLEDSKDV ISQERVARLP ANGKPKNLLH FRYWPRITGQ ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK GNDWTFQFRF WPNNNSRMYV LEGVTPCIQA MQLNAGDIVT FSRIDPGGKF VMGYRRASDS MDTQDASTFA HSNGFATKEA TFSGATANLH SGKSYPDLLQ TRNGNGEPYL NGCSEHLRFG TGTADCLQTE NCEMVNNDLL QQTISVSEKT LNIAPKSKRL LTHNEDAVEL RITWEEAQDL LHPPPSTMPS VETIEDKEFE EFEEPPVFGK GTTINDPPSG SLSSASEKMS SMDLENIPVT SKDSKKRRIM EKLDSSAGAT TKHPRHCSGC TCILCIQPPS GKGRHKPTCT TVRRQFKTLM KRKKQRESDA TQNDQIHHSD EGDTHGASRE GAIASNLENE GSLNRMDELG TGQIDLNSHP DHE // ID A0A0B2RGJ8_GLYSO Unreviewed; 308 AA. AC A0A0B2RGJ8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Putative B3 domain-containing protein {ECO:0000313|EMBL:KHN31454.1}; GN ORFNames=glysoja_035561 {ECO:0000313|EMBL:KHN31454.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN31454.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN31454.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN31454.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN651118; KHN31454.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 217 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 217 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 35486 MW; D13730062181EEBF CRC64; MESALPSHGD KSLQEFFKVF LLRTGSTKLQ IPTSFTKFFN GVLPLKVTLV DHDRKSWDVY LEKTEGCLVF KDGWQQFAKE KVLEDGDFLV FQYDGRSTFN VKIFSKTGCR KVAAPASSAK IEPTVILDED SDQRCSKEIQ CGRKRKQSPP SLKTNEESVL EGPCPSEGAR FKSKRVYEEK DDHNEKKPDP TKCVPLQNSH HFQIYFNAPW RLKKVEIPRS VLRKTNIKLM SKISLRDENG KLWPASIISI KKEYRHFLGG GWNDFRRSYN IQEGDRCDFE FVVDKANAAQ ELLVRVRSKC SFGWVDCK // ID A0A0B2RM45_GLYSO Unreviewed; 1098 AA. AC A0A0B2RM45; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_037093 {ECO:0000313|EMBL:KHN32922.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN32922.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN32922.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN32922.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN649906; KHN32922.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 986 1070 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1098 AA; 121451 MW; 1A638181454A6AB2 CRC64; MKKKSSIKAE LWHACAGPLV KLPPSGTHVI YFPQGHSEQV SASLNRDVHS QIPNYPNLPS KLLCLLHTLT LHADPQTDQV YAQITLQPLP SFDKDALLRS DLALESTKPP PDFFCKQLTA SDTSTHGGFS VPRRAADKIF PPLDYSMQPP AQELVARDLH DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKSVYSHQPS LGMRFRMMFE TEDSGTRRHM GTVTGISDLD PVQWKNSQWR NLQVGWDEST AGEKRSRVSI WEIEPVTAPF FICPPPFFRS KRPRQPGMPD DELSDFDNIF KQTMPWPGDD MCVKDPQGLP GLNLAQWMNM QQNPALASSL QPNYAPSLSG SILQNIPGPD ISHQLGFSAP QISQSNNVAL NTQRLLQTAP QLDHLQKLPS TSSTLGTVLP PQQQLGDITQ QSRQNLANQT IPQGQVQAQL VHPQNIVQTN NILQQQQPSS QNHQLHRSLS QNPSQQQQQT IIGQNQHQNL IQSPMPDHVQ QLQMSDDQIQ LQLLQKLQQQ KQTLLAQQTA LQHSTQLTQI QDRQRQLLDK THNLSRALTP GQVREIPPIF QNSLPKANSI SNPITKANCQ SNIQFYQQPK LQQQQPGLLS EMPGHTALHP TTTTNQLSAA GSSILTGAGG AGQSVITDEV LSCSTSPSAN NCTNALPQLI NSRFQRSTLV GDDMAQSAAT ILSSSALETT SSNANMLKDL QPKSEVKPSL NISKIQNQGH FAPQTYLNGN AAHTDCLDTS SSTTSVCLSQ NDAHMHQNNN PLSYNPQSLL FRDNNQDGEV QADARSNIPY ANNIDSQMGM PLNPDSLSTK GTLRLGKDLS NNFSSEGMLG NYEINRDAQQ EPSSSMVSQT FGVPDMAFNS IDSTIDDSNF LNSGPWAPPP APPLPPLPPA QFQRMRTYTK VYKRGAVGRS IDITRYSGYE ELKQDLARRF GIEGQLEDRQ RIGWKLVYVD HESDVLLLGD DPWEEFVNCV RCIKILSPQE VQQMSLDGDF GNGGLPNQAC SSSDGGDT // ID A0A0B2RM85_GLYSO Unreviewed; 288 AA. AC A0A0B2RM85; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN33178.1}; GN ORFNames=glysoja_039494 {ECO:0000313|EMBL:KHN33178.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN33178.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN33178.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN33178.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN649796; KHN33178.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 288 AA; 32722 MW; 7C612B03770739D9 CRC64; MSSINHYSPE TTLYWTNDQQ QQAAMWLSNS HTPRFNLNDE EEEEEDDVIV SDKATNNLTQ EEEKVAMFEK PLTPSDVGKL NRLVIPKQHA EKHFPLDSSA AKGLLLSFED ESGKCWRFRY SYWNSSQSYV LTKGWSRYVK DKRLHAGDVV LFHRHRSLPQ RFFISCSRRQ PNPVPAHVST TRSSASFYSA HPPYPAHHFP FPYQPHSLHA PGGGSQGQNE TTPGGNSSSS GSGRVLRLFG VNMECQPDNH NDSQNSTPEC SYTHLYHHQT SSYSSSSNPH HHMVPQQP // ID A0A0B2RWW4_GLYSO Unreviewed; 672 AA. AC A0A0B2RWW4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=glysoja_046814 {ECO:0000313|EMBL:KHN36953.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN36953.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN36953.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN36953.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN647387; KHN36953.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 561 642 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 106 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KHN36953.1}. SQ SEQUENCE 672 AA; 74963 MW; 0DA06A3FDEFB8E7F CRC64; LYEQQWKGCA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESSQDEPTN ADPCTAEPPR APVHSFSKVL TASDTSTHGG FSVLRKHATE CLPVLDMSQP TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIIGVNKY LEAMDKKFSV GMRFKMRFEG DDSAETDKRF SGTIVGVEDI SPHWVNSKWR SLKVQWDEPA AVPRPDRVSP WEIEPFVASA STPSVQPTMV KTKRPRPPSE TPDVDTTSVA SVFWDAGLQQ ADMAQKNVLA ESKWNDNTGT WHHMQTDMNS KSNSGNTMLR NQTEGSWLSS PHSSCPSHLF QDVTDDSKIV SAWPVSKPHS SKLNNDHVLD QVDKESKVET ATSYRLFGID LIDPSRNSPS VEKASAQAVN VPKVTTEGCT STLSRTDAGH KSDVSMASSM ERKQEQLQVS PKDTQSKQIC RSRTKVQMQG VAVGRAVDLT MLDGYGQLIN ELEDMFNIKG QLQHRNKWEI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVKKMSC GSKLPISSVE DGTVISSDTT ET // ID A0A0B2RYA1_GLYSO Unreviewed; 353 AA. AC A0A0B2RYA1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN37403.1}; GN ORFNames=glysoja_013618 {ECO:0000313|EMBL:KHN37403.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN37403.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN37403.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN37403.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN647118; KHN37403.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 68 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 256 350 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 68 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 256 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 40937 MW; 91CAD1F76EB374D0 CRC64; MEVACQIQCL SSLYGNEWKV NWTKQNGEVW FEKGWKEFVE HYSLDQGRLI FFKYEGTSQI DILILDQSAL KIDYPCDTCD ENDNLDHTHE APDIIFGEWP YQKAGQMTEA YSLDLDHILV FKYVGRSEFQ VVILDQSGLE MSYPLTEATL DGEDNGNSLP QSKRASSPLP FSPSTKKVKT NTRKETNAYP IQDEDVETKC AQSKRNKAKK RGGRRIMYAN RRFSKSKAIQ NEELLQNTES STALERANYF HSENPFFIRE MHTSYIKYHI LSIPIEFARN HGMENITKVI LRVGNRSWPV KLNYYSKHNY CRLTSGWSEF MSQCKLKSGD VCHFELIDKG KFVFEVRVTG CID // ID A0A0B2RYG4_GLYSO Unreviewed; 823 AA. AC A0A0B2RYG4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_016898 {ECO:0000313|EMBL:KHN39511.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN39511.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN39511.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN39511.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN646308; KHN39511.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 697 781 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 823 AA; 91503 MW; 6AC61A846ECFB57F CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLVCQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGVP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTQHFQYGRD EATNGLMWLR GGPGDQALNS LNFQGSGLLP WMQQRMDPTL LGNDHNQQYQ AMFASGLQNL GSGDLMRQQM MNFQQPFNYL QQSGNPNLPL QLQQPQAVQQ SVSSNNILQP QAQVLAENLS QHLQKSHNNR EDQTQQQQHT YQDTVLLQSD QLHQRQHSGL PSPSYSKPDF LDSSMKFPAS VSPGQNMLGS LCPEGSGNLL NLSRSSQSML TEQLPQQSWA PKFTPLQINA FGNSMQHVQY SGKDTAMVPP HCNPDSQNPI LFGVNIDSSG LLLPTTVPRY TTASAEIDAS AMPIGESGFQ SPLYPCVQDS SELVQSAGQV DPQNQTRTFV KVYKSGSVGR SLDISRFSSY HELREELAQM FGIEGKLEDP LRSGWQLVFV DRENDVLLLG DDPWESFVNN VWYIKILSPE DIHKMGEQAV ESLGPSSGHR LNSTGADSHE IVSGLPSIGS LEY // ID A0A0B2RZU6_GLYSO Unreviewed; 331 AA. AC A0A0B2RZU6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN37402.1}; GN ORFNames=glysoja_013617 {ECO:0000313|EMBL:KHN37402.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN37402.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN37402.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN37402.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN647118; KHN37402.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 252 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 331 AA; 38392 MW; D460A3EB63EFEDA4 CRC64; MQYPLMSETL LDGNSICQRK RAKSPFSHSP SIKKVKTNPR KEPANYPSHD VKTEPAQSQR ANVELSKNFH ADDLVKAKPK KRGGRRRIMC SKSKAIQNTE SSTALERANS FRSENPFFIC AMRKTYIQRS VLFMPGNFIT EDQQREDDHV FLWISSERAW HVKFYPSHSS GQILLSIGWM DFVKDNNLKI GDVCVFDQIK KPGISFRVVI FRDTEESSPS KFPDSEFRRC NNEVSENDFT LSISKPCQFY CMYVPKKFIR SHEMDHINEV KLQVGKRSWN VKLDCYGRFT SGLHDFLSQC NVEAGDVCHF ELIDKKKFVF EVRVTRCISI D // ID A0A0B2S0Q8_GLYSO Unreviewed; 620 AA. AC A0A0B2S0Q8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_000784 {ECO:0000313|EMBL:KHN40286.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN40286.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN40286.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN40286.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN645832; KHN40286.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 510 591 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 69626 MW; 48C83D577D8E7571 CRC64; MEQLEVSTNQ ELNQRIPLFK LSSKILCRVV NVHLLAEQET DEVYAQITLV PESNQTEPTS PDPCPAELPR PRVHSFCKVL TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LQGFEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGNNGEL RVGVRRIAPL QSSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRFKMRFEG DESPENDKRF SGTILGVEDI SPHWVNSNWR SLKVQWDEPA SFPRPDRVSS WEIEHILACV PTTSSQPAVI KNKRPRQASE VPDLGDTPLA APTFWDAGLT QCDMTQLRVM TESKRSDSSS HMRHHNSKSN NNGISMNQTE ASWLSSPQLY QDTTDDNKSI LAWPISKPHS ERLNNDHFLD QVDKNINKVE AATSYRLFGI DLIDHARNNS LSVENASGVA SECKTDVNHE SDLSKASKEW NQEQLLVSPK ETQSKQVCSR SCTKVQMQGV AVGRAVDLTT LDGYDQLVDE LEKMFDIKGQ LQLRNKWEIV FTDDEGDMML VGDDPWPEFC NMVKRIFICS SQDVHKLSSG SKLPISSMGE IVISLNTTET // ID A0A0B2S1E6_GLYSO Unreviewed; 700 AA. AC A0A0B2S1E6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_017369 {ECO:0000313|EMBL:KHN39075.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN39075.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN39075.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN39075.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN646356; KHN39075.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 614 694 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 77266 MW; 3BCD35C18C2EE7E1 CRC64; MITFMDTKEK SKEVESCLDP QLWHACAGGI VQMPAVNSKV YYFPQGHAEH ACGPVNFRTC PKVPPFVPCR VTAVKYRADP ETDEVYAKLK LIPLNANDVD YDRDVVGGAE TQDKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VDPPVQNILA KDVHGETWKF RHIYRGTPRR HLLTTGWSTF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGICGGLETS SGWNPAGGNC HIPYGGFSPF FREDDNRISR NGNSNGLNPS VSMMGKGKVR PEAVSEASNL AANKKPFEVV YYPRASTPEF CVKASLVEAA LQIRWCSGIR FKMAFETEDS SRISWFMGTI SSAQVADPLN WPNSPWRLLQ VTWDEPDLLQ NVRRVSPWLV ELVSNMPAIH FSPFSPPRKK LRLPQQPDFP LDGQIPLSTF PSNLLGPSNT NQFGCLLEST PAGMQGARHA HYGLSLSDLH LSKLQSGLFS TGFPSLDHAA TPMRVSNSIT LQKPNLSENV SCLLTMANST QSSKKLDVGK TPSLVLFGQK ILTEQQISPS SSGDTLSPVL TRNCSSDGNV DKVTNFSDGS GSALHQEGLR EHSSCERFQW CKDNHQETEA GLEIGHCKVF MESEDVGRTM DLSLLRSYDE LHRKLADMFG IEKSEMLSHV LYRDSTGAVK RISDESFSDF TRTAKRLTIL MDSGSNNVGV // ID A0A0B2S2K9_GLYSO Unreviewed; 896 AA. AC A0A0B2S2K9; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_004027 {ECO:0000313|EMBL:KHN38362.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN38362.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN38362.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN38362.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN646684; KHN38362.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 760 846 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 896 AA; 98953 MW; 95810E7D2FCDB928 CRC64; MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFAI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL GVTPWMQPRL DPSIPGLQPE LYQAITSSAF QEMRTMDLSK SSQSLLQFQQ TSNVPSAHAS EVQRQLLPQS QLQNTLLHNF QENQVPAQSQ LLQQQLHRYH PYSDQQQQQQ QLKNLPVQQQ LPNVISPMSK FASGTQSQSP PMQALASHCQ QQSFPEPMRN HISGSDVSPI QSLLGSFSQD GTSQLLNLSG SNSVMSSAAI LPKQITAEPP QLPSAASQCI LPQVENLGTS QSNVSELAAL PPFPGREHSA YHGAADPQSN LLFGINIDPS SLMLQSGMSN LRNIGKVNDS LSLPFSTSNC GGATGTDFPL SSNMTTSSCV DESGFLQCSE NVDQANIPTG TFVKVHKSGS FGRSLDISKF SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKVLSPSTSA PGDKLSTPVN SCDNYVSQQE LRSSRNGMAS MGSFHY // ID A0A0B2S2Q3_GLYSO Unreviewed; 718 AA. AC A0A0B2S2Q3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription repressor VAL1 {ECO:0000313|EMBL:KHN40991.1}; GN ORFNames=glysoja_013333 {ECO:0000313|EMBL:KHN40991.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN40991.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN40991.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN40991.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN645603; KHN40991.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 317 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 718 AA; 80090 MW; 10900E0D3F3AA556 CRC64; MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLHQTGWREC SFCNKTLHCG CIASSSMFEY LDYGGIGCVT CVKTSQLNLI RDTENTIGSV RSIKNNASDR HTEHMDSRLL VDGAGKGNLM QLRRHVEASE SSRWQRAERD GIDSCIGPNR QDDRRFSNVM KLSGHSLTFT TLDNNRPTWE TQTMHKSSSQ NMSLGTSSGN SVLPSALDIA ERRLEGKTSF CPFHQGQRLF SISKPLMDGI AINLEASKGV ISQERVARPP ANGKTKNLLL SRYWPRITDQ ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK GNDWTFQFRF WPNNNSRMYV LEGVTPCMQA MQLNAGDTVM FSRIDPGGKF VMGSRRASDS IDTQEASTFS HSNDFATKEA TFSGATANLH SGNSYPDLLR TTKGNGEPYL NRYSEHLRFS TETANCLQTE NDMELRVTWE EAQDLLHPPP CVKPSVETIE DKEFEEFEEP PVFGKGTTIN DHPSGSLSSA SEEMSSRELE NILVTSKDTK KRRIMEKPES IQEHESVGLD DHIDPTDSSA GATTKHPRHR SGCTCIVCIQ PPSGKGRHRP TCTCLACMTV RRRFKTLMMR KKQRESDATQ KDQIHHSDEG DTNGGASRDG AIASNLENEG SLNRMDELGA GQIDLNSHPD HEDMQVAM // ID A0A0B2S2R1_GLYSO Unreviewed; 407 AA. AC A0A0B2S2R1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Putative B3 domain-containing protein {ECO:0000313|EMBL:KHN41001.1}; GN ORFNames=glysoja_013343 {ECO:0000313|EMBL:KHN41001.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN41001.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN41001.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN41001.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN645603; KHN41001.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 407 AA; 46016 MW; 5BE6EA226FA6F296 CRC64; MAKGCSNNTY EEARKQRLEE NKKRFEDLGI SRISKNLTEI ASSAKKKLRH VPKQKTKKTN VEVEPRRSSR VRNPVRSYRE DVNIDLPPLR KRSRSSSSSW GSYIARPLDE IKEATKEERL CALEAAEAIQ INLNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEHLPKTL HDMVLEDENG SEYEAVYIGN RAGLSGGWRA FALDHKLDDG DALVFELIEA SRFKIYIVRA FPDSVEEKGN NILEEEGNVR ATKAPKAACN LESECKTKKP KQAAVYETKE SESSQEYLLD SSIDNEVKPQ GVNPTNKETK FSQKNTPKKS KYPATADSKG KVQIKTEKPK ASIKLSNNTR KSKEGINEIG GSAKLEKNEF VQDADSKLEK VELVEEARKC VTKKLEKTSS KFFRKKA // ID A0A0B2S541_GLYSO Unreviewed; 868 AA. AC A0A0B2S541; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_016826 {ECO:0000313|EMBL:KHN39439.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN39439.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN39439.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN39439.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN646308; KHN39439.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 762 846 PB1. {ECO:0000259|PROSITE:PS51745}. SQ SEQUENCE 868 AA; 96627 MW; 63B664C4475006FD CRC64; MMASMEEKIK IGGGMIVGAQ TLAAEMKLLK EMQEHSGVRK TLNSELWHAC ARPLVSLPQV GSLVFYFPQG HSEQADKETD EIYAQMTLQP LNSEREVFPI SDFGHKHSKH PSEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTIQP PTQELVVRDL HDNTWTFRHI YRGVDERSQL RVGVRRVNRQ QTTLPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA CPSEFVIPLA KYRKSVFGTQ VSVGMRFGMM FETEESGKRR YMGTIVGISD VDPLRWPGSK WRNIQVEWDE PGCGDKQNRV SVWEIETPES LFIFPSLTSG LKRPLPSGLL ENEWGTLLRR PFIRVPENGT MELSNSIPNL YSEHMMRMLL KPQLINNNGA FLSAMQQESA ATRGPLQEMK TTLAAENQMP LKNLHPHSIP DQPNALNMQS LLKNDQPEKL HPLGKIDNHL SSGIVIDKPK SESEVLPDHV IDYPSMEGCN IEKVAANPVN QQGLANQLPF HNQNQSPLLP QSSPWPMPPQ IESSMPHPQM IDMVQADSAM VNGLFPQLDI NEWMSYASSQ PFAGQNRPTG PLSDLQEHTS LQPQVVNPPL PSMNNEVWDH YVKNLKFLSQ ADQLTSICQP GLYGLNGIPS SNNLRDLSAE SNNQSEICVN VDASNSVGTT VVDPSTSSTI LDEFCTMKDR EFQNPQDCMV GNLSSSQDVQ SQITSASLTE SHAFPLRDIP DNSGGTSSSH VDFDESSFLQ NNSWQQVPAP IRTYTKVQKA GSVGRSIDVT TFKNYEELIR AIECMFGLDG LLNDTKCSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPSEVQQM SEEGMKLLNS GALQGMNV // ID A0A0B2S661_GLYSO Unreviewed; 675 AA. AC A0A0B2S661; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_038393 {ECO:0000313|EMBL:KHN40198.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN40198.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN40198.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN40198.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN645868; KHN40198.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 644 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 675 AA; 75252 MW; 7B7DD9ED97CCEE44 CRC64; MASTLKSGGI HTGAINDDLY KELWHACAGP LVTLPREGER VYYFPQGHME QLEASMYEGL EQQMPSFNLP SKILCKVVNV HLRAEPETDE VYAQITLLPE ADQSEVTSPD DPLPESPRVK IHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH GNEWHFRHIF RGQPKRHLLT TGWSVFVSSK KLAAGDAFIF LRQGENGELR VGVRRVMRQQ SNVPSSVISS HSMHLGVLAT ASHAIATGTL FSVFYKPRTS RSEFIVSVNK YLEVQSHKLS VGMRFKMRFE GDEIPERRFS GTIVGVGDNK SSSVWPDSEW RSLKVQWDEP SSILRPDRVS SWELEPLVST TLANSQPTQR NKRARPLILP STMPDSSLQG IWKSSVESTS FSYCDPQQGR GLYPSPKFNS SATNFIGFSG NSSVGSPSNK SIYWSNRMEN NLESISAIAL KEAGEKRQGT GNGCRLFGIQ LLENSNAEGN LQTVTLSGRV GDDRSVPSLD AESDQHSEPS NANRSDIPSV SCDAEKSCLQ SPQESQSKQI RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEDMFNIKT ELCGSLKKWQ VVYTDNEDDM MMVGDDPWDE FCSVVRKIFI YTAEEVKKLS PKIRLPMNEK VNPSKQDSEA IVNPEDQSSN MGPSC // ID A0A0B2S6I7_GLYSO Unreviewed; 1110 AA. AC A0A0B2S6I7; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_000816 {ECO:0000313|EMBL:KHN40318.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN40318.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN40318.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN40318.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN645832; KHN40318.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1110 AA; 122978 MW; 42F527D2B98C7429 CRC64; MKTTQQPEAP QGDPCEEKKK SINPELWQAC AGPLVNLPPS GTHVIYFPQG HSEQVAASLN KDPHSQIPNY PNLPSKLLCL LHNLTLLADP ETDEVYAQIT LQPVPSFDKD ALLRSDLALK SSKPQPDFFC KQLTASDTST HGGFSVPRRA ADKIFPPLDY SMQPPAQELV ARDLHDTVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QHLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRTSPSEFVI PLAKYYKSVY SHQPSLGMRF RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSIWEIEP VTAPFFICPP PFFRSKRPRQ PGMPDDELSD FDNIFKRTMP WLGDDMCMKD PQGLPGLSLA QWMNMQQNPA LANSLQPNYA PSLSGSILQN IPGADISRQL GFSAPQISQS DNVALNTQRL LQTAQQLDHL QKLPSTSSTL GTVLLPQQQL GDITQQPRQN LANQTIPQGQ VQSQLLHPQN MVQTNNILQQ QQPSIQNHQL HRSLSQNPSQ QQTTIGQNQP QNLIQSPMPD HVQQLQMSDN QIQLQLLQKL QQQKQTLLAQ QTALQQPTQL TQIQDQQRQL LDKTHNLSRA LTPGQVLEIP HIIQNSLPEA NSISNQMTKA NCQSNIQFSQ QPKLQQQQQP GMVSEMPGHM ALLPTATTNQ LSAGGSSIVT GAGGAGQSVI TDDVPSRSTS PSTNNCTNAL PQLINSRFPR STMVGDDMAH SAATILSSSA LETSSSNANM LKDLQPKFEV KPSLNISKIQ NQGHFAPHTY LNGNAAHTDC LDTSSSTTSV CLSQSDAHMN QNSNPLSYNR QSMLFRDNNQ DGEVQADARS NIPYANNIDS QIGMPLNPDS LLTKGTLRLG KYLSNNFSSE GMLGNYENNR DAQQELSSSM VSQTFGVPDM AFNSIDSTID DSNFLNSGPW APPPAPPPLP PAQFQRMRTY TKVYKRGAVG RSIDITRYSG YEELKKDLAR RFGIEGQLED RQRIGWKLVY VDHESDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFGNGGLQNQ ACSSSDGGNT // ID A0A0B2S9N3_GLYSO Unreviewed; 846 AA. AC A0A0B2S9N3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_013361 {ECO:0000313|EMBL:KHN41019.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN41019.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN41019.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN41019.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN645603; KHN41019.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 720 804 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 846 AA; 94116 MW; 23D94057652E5A2F CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVAYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLICQL HNVTMHVDVE TDEVYAQMTL QPLTPQEQKD TFLPMELGVP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVKD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG TSSFHDGRDE ATNGLMWLRG GPGDQALNSL NFQGSGLLPW MQQRMDPTLL ANDHNQHYQA MFASGLQNLG SGDLMRQQIM NFQQPFNYLQ QSGNPNPPLQ LQQPQAIQQS VSSNNILQPQ AQVMAENLSQ HLLQKSHNNR EDQTQQQQQQ RHTYQDTVLL QSDQLHQRQH SGLPSPSYSK PDFLDSSMKF PASVSPGQNI LGSLCPEGSG NLLNLSRSGQ SMLTEQLPQQ SWAPKFTPLQ VNAFGNSMQH VQYSGKDTAM VPPHCNSDTQ NPILFGVNID SSGLLLPTTV PRYTTASADS DASAMPLGES GFQSPLYPCG QDSSELVQSA GQVDPQNQTR TFVKVYKSGS VGRSLDISRF SSYHELREEL AQMFGIEGKL EDPLRSGWQL VFVDRENDVL LLGDDPWESF VNNVWYIKIL SPEDIHKMGE QALESLGPSP GQRLNSTGAD SHEIVSGLPS IGSLEY // ID A0A0B2SCK4_GLYSO Unreviewed; 1129 AA. AC A0A0B2SCK4; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_038352 {ECO:0000313|EMBL:KHN42790.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN42790.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN42790.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN42790.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN644133; KHN42790.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1002 1095 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 678 705 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1129 AA; 126217 MW; 8D37E0AD42F6E0D7 CRC64; MKAPPSGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPSA KYNKALYNHT SLGMRFRMMF ETEESGVRRY MGTITGITDV DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN QVNQLQQSPT SWPPQQQQQQ QKLQSMLQTP LNPLQQQQQQ RQQQLPVPQN LSQPQQQQPQ MPQQRAQQPQ QQQQQSCQQT IMSNGTVASN QIPNQCVQQP VTYSQLQQQQ LLSGSIPPQQ SFQSPNKNAL LMTSLPQDSQ FQQQIDQQAS LLQRQQQQQT QLQSSPLQLL QQSLSQRASQ QPQMTQMCQQ NSSEQQPQLQ LLQKLQQQQQ QQQQQQQQQQ QLLSTSSPLL QSQLLHQQNT HQQNTHQQNQ QLPQLPLSQG HQPQQLGNNA FSMEKLLNGN NYSTSSLMQT QQLSVNQPHN TQKSLTNTRA PSTLTDGDAP SCSTSPSTNN CQISPNLMKR NQHVPATLGG PSVLEPTNHL MQGLHSKSEM QIKHELPSVR GTDQLKFKGT VADQMEASSG TSYCIDPNNI HQNSPLPNFC MDGDVQSNPR NNLPFASNLD GLTPDTFLSR GYDSQKDLQN LLSNYGGAPR DIETELSTAA LSPQPFGVPG IPFKPGCSSD IAINDPGVLN NGLWANQTQR MRTYTKVQKC GSVGRCIDVT RYKGYDELRH DLARMFGIEG QLEDPQRTEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQKM SLDRDLGHVP VPNQACSGTD NGNAWRGQYE DNSAASFNR // ID A0A0B2SCS2_GLYSO Unreviewed; 360 AA. AC A0A0B2SCS2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1-like protein {ECO:0000313|EMBL:KHN42875.1}; GN ORFNames=glysoja_048139 {ECO:0000313|EMBL:KHN42875.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN42875.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN42875.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN42875.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN644001; KHN42875.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40776 MW; DBA1E71BC64973D6 CRC64; MTSACNKNPK PIAVRFFKNI FRASLAHGLL KLPTIFTKKY GDGMSNPVSL KSPDSTRWKI YWTKHDGEIW FQKGWKEYAT YYGLDHGHLL FFEYEGTSHF NVHIFDTSAV EIDYPSNGTH HGKDSSHVEI SDDPVEILDE KFSCQKTREK STVSSPQPTK KMKAGLTTNV KKRPNVVNLH RHVQIRSIKS QKAKFVKHEL DEDESRGIFH TERPKGEQLT STALNRATAF RSENPSFKLV MNPSFIYGDY LEIPPEFAEI YLKKTHAVVI LEVLEGRTWP VICSAPTITG GWHKFASENH LNVGDVCVFE LIQKIQGLAF KVSIFRGAEE PSCPISQASA DGFCEEVFCK DELECGDVTV // ID A0A0B2SFB1_GLYSO Unreviewed; 182 AA. AC A0A0B2SFB1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN42964.1}; GN ORFNames=glysoja_007494 {ECO:0000313|EMBL:KHN42964.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN42964.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN42964.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN42964.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN643936; KHN42964.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 182 AA; 20428 MW; 7DD086843E5BCC16 CRC64; MFSRRSSGRV ASGRVALENG VPLPLLPDPK ANLQWDEVKP LSGKPYWHSV LSPTNLQPRY NLMPGMNLRS KLPSNEVPTI LIYGGKSWDM VYYGQSKQKA FGVTGWKKFV IDNCLRVGDA CIFELMESSD KKVILEVQIL RGDIPSEWLG NEMIIGQGNE MIIGQENEMI IGHSRENPIV LN // ID A0A0B2SFE8_GLYSO Unreviewed; 909 AA. AC A0A0B2SFE8; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KHN43730.1}; GN ORFNames=glysoja_039569 {ECO:0000313|EMBL:KHN43730.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN43730.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN43730.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN43730.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN643802; KHN43730.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 326 427 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 591 641 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 326 427 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 909 AA; 100820 MW; F890D98BA674A2E9 CRC64; MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI ANNEKPNGSG TSKVQNVSTQ QQYTSLANQL TVRGMQVGHY AENDGLRCWF KPHNVETDGP SAEMKPEILP SVGELGNTLI SQFHCESNGS SKASKAENCK AETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE QSKTSPLLLG SRSRHLLPKP PRSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGEYPAFSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLRIQDVKG KEWMFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKATNST AVQETLPSNM PNGSHSSETS YSGVYENLPI LSGYSGLLQS QKGCSETHLN ALSKKWNSAG GDMNWHNIDM PESRKRDGLP LPPVMVPEKK RTRNIGSKSK RLLIDSQDAL ELKLTWEEAQ DLLRPPPTVK PSIVMIEDHV FEEYEEPPVF GKRSIFVVRS TGVNEQWMQC DSCSKWRKLP VDALIPPKWT CVENLWDQSR CSCAAPNELN PRELDNLLRL NKEFKKQRLT ASQRPALERE SSGLDALANA AILGDDASDS GRTPVVTTTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NQLSWRTKDE SEVDSTSRHL TPVDGLENEV RVQNELDSRS PDDAVAEAAK GQLDLNCQPD REDVQAGPNS LSMTSLLEEA NLPLETYLKQ NGLTSLITEQ QTNSASNVQA QTTNDSEVKH NEDCGTASVI HAQESSPEEN SGQDKEQNN // ID A0A0B2SGU3_GLYSO Unreviewed; 831 AA. AC A0A0B2SGU3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_002140 {ECO:0000313|EMBL:KHN43557.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN43557.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN43557.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN43557.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN643915; KHN43557.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 516 598 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 79 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 831 AA; 92801 MW; 34B6BCA1FDA56123 CRC64; MEHVAAYTQH QQDGHMEIPV YDLPSKILCK ILHIELKAEA FSDEVYAQVT LVPALKQDNL RLEVEENDQI PSITTTYTFS KILTPSDTST HGGFSVPKKH ADECFPPLDM TQQTPAQEIV AKDLNGFEWH FRHIYRGKPK RHLLTSGWST FVNAKKLVAG DSCIFVRAES GEIRVGIRRA TEHLSNVSQS SSLISGHSMQ LGILASASHA VSSGTMFIVY YHPWTNPFEF IVPLRTYLKS TVPDYPIGMR VQMQHEVEES LRRHAGTIIG HEDIDKIRWP GSEWRCLKVQ WDAVLDDKMN PERVCPWWIE PLESAKEKKQ VPALPTTKKA LALNQRSLPG INGQNSAGPS SQTRREDRDL QGQDYSGIHS AQPLQRAPPT DVIHPSKVPI RGSRFGKENP NQLPFPMQGP LHKSLSRSMS LTHEDLSITS SNLSSIGSES LGWPSTESRN ENDVPFGQPG SCSTFKLFGV SLIDRSSELP SLQSAAFNKT SSLLSNPPMR VAPGKTCKKC HRVNNRSCTK VLKLGTALGR AVDLARFHGY TELIAELDSM FEFRGSLINE SSGWHVTCMD DDGDMMQLGD YPWQDFQGVV QKMIICPKEA GIFRISGLVA IVTKEFVSGA GSYSHNSILQ ATVTPALMAA PEKERRRQYP MNMMTTLKLN LGQHMIVSPR ATRTVAFAPP SSVTVSLTHQ HASAPSSSSS LILRHNGTRV RSHSQPFPES DDQVEDLRVP DNWLDPTIAF QESEWLRVTL HKWLDDEYCP EETNVEISRV AANSFYNSLL QKQTDLGEIL LKMARELESI NYKESFHGAF SSANAAIDLI AQRIEQLCQS I // ID A0A0B2SNW2_GLYSO Unreviewed; 699 AA. AC A0A0B2SNW2; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_007960 {ECO:0000313|EMBL:KHN48291.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN48291.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN48291.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN48291.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN639822; KHN48291.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 613 693 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77572 MW; EF9DF8220521F9EA CRC64; MITFMDTKEK LKEVERCLDP QLWHACAGGM VQMPTVNTKV YYFPQGHAEH ACGPVNFKTC PKVPPFVPCR VVAVKYMADP ETDEVYAKLK LVPLNANDVD YDHDVIGAET RDKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGLETSS GWNPAGGNFP MPYSGFSPFL REDDNRILRN GNSNGLNPSV SMMGKGKVRP EAIIEAANLA ANKKPFEVVY YPRASTPEFC VKASLVEAAM QTRWYSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHF SPFSPPRKKL RLPQHPDFPL DGQIPLPTLP NNLLGPNNTN QFGCLLESTP AGMQGARHAH YGLSLSDLHL SKLQSGLSSA GFPPLDHAAT PMKVSNNKTL QKPSISENVS CLLSMTNSTR SSKKLDAGKT PSLMLFGQKI LTEQQISPSS SVDTLSPVLT RNCSTDGNVN KVTNFFDGFG SALHQQGLHE HSSCERFQWC KDNHQEIEAN METGHCKVFM ESEDVGRTMD LSLLRSYDEL HRKLADMFGI EKSEMLSRVL YCDSVGAIKH IGDEPFSDFT RTAKRLTILM DSGSNNVGV // ID A0A0B2SP60_GLYSO Unreviewed; 909 AA. AC A0A0B2SP60; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_030048 {ECO:0000313|EMBL:KHN46047.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN46047.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN46047.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN46047.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN641517; KHN46047.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 776 860 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 909 AA; 100689 MW; 27B0BB06401304BC CRC64; MKLSSSGFSS PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NLTMHADTET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPF AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHAGLKD DDFGTNSSLM WLRDTDRGLP SLNFQGIGVS PWLQPRLDPS MVNYQSDMYQ AMAAAALQDM WTSDPSKQHP TSAIQFQQQQ NFPNRTSALM QTQMLQQSQP QQAFPNSQEN SHPSPSPSQS QAQTQTHFQQ HLQHQHSFNT QNQHNLLQQQ QQSQLQQQQV VDHQQISSAV STMSQFVSAP QSQSPPMQAI SSLGHQQSFS DSNGNPVTTA VVSPLHSILG SFPQDDTSHL LNLPRSTSWV PVQHSTAWPS SKRVAVDPLF SSGASQCVLP QVEQLGQPQS TMAQNGIALP PFPGRECTIE GSNDPQNHLL FGVNIEPSSL LMHNGMSSLK GVSSNSDSPT IPFQSSNYLN TTVPDSSLNP GMTHNIGESG FLQTPENGGQ GNPTNKTFVK VYKSGSFGRS LDITKFTSYP ELRSELARMF GLEGELEDPV RSGWQLVFVD QENDVLLLGD GPWPEFVNSV GCIKILSPQE VQQMGNNGLE LLNSVPIQRL SNGVCDDYAG REDPRNLSTG ITIVGSLNY // ID A0A0B2SQH6_GLYSO Unreviewed; 280 AA. AC A0A0B2SQH6; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN47093.1}; GN ORFNames=glysoja_018460 {ECO:0000313|EMBL:KHN47093.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN47093.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN47093.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN47093.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN640926; KHN47093.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 32520 MW; A451CE68D81985D4 CRC64; MQPRQSRRNY VEGSDLAESE SNSKHFLKII LPSPIHANQM RIPEEFIKRF GDELSNVATV TVPDGRVWKM RLKKCGKDVS FRSKWREFVE YYSLGYGSYL VFRYEGNSKF RVLIFDTTSA EICYPDLDNR KRSKVDDQTR KKEHKEAIDE DDVNLKAWKK ESDCSEIAKD ASTKPKHPSV TCTIQPYRLY VRSHFSKKHL KPNVCMMLQN CNGEQWDVSC VCHNTRYGGM MLTRGWRKFV RDNDLSEGDP CVLELIETNP AVVLKLTVLG APEYHSSRPH // ID A0A0B2SR82_GLYSO Unreviewed; 900 AA. AC A0A0B2SR82; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=glysoja_020221 {ECO:0000313|EMBL:KHN47353.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN47353.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN47353.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN47353.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN640812; KHN47353.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 767 851 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 900 AA; 100305 MW; 8695CF9970195BDE CRC64; MRLSSAGFSP PPQEGENRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWQVILL NEKNQLLLGI RRANRPQTVM PSSVLSSDSM HLGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWQNSHWRSV KVGWDESTAG DRQPRVSLWE IEPLTTFPMY PSPFPLRLKR PWPPGLPSFH GMKDDDFGPN SPLLWLRDPD RGLPSLNFQG IGINPWMQPR FDPTMLNMQT DMYQAAAVQD MRSLDPSKQH SASLLPFQQP QNFPNRTAAL MQAQMLQQSQ PQQIFGNTQE NQHSPQSQAH LQQHLQHQHS FNSQHHHHHQ QQQQRQQHQV VDNQQISSAV STMSQFVSAP QPQSPPMQAI SSMCQQQNFS DSNGNTVTTI VSPLHSILGS FPQDETSHLL NLPRTSSWIP VQNSSGWPSK RVAVDPLLSS GASQCVLPQV EQLGQPQSTM SQNAISLPPF PGRECSIDQE GSNDPQNHLL FGVNIEPSSL LMPNGMSSLK GVCGNNGSST LPYQSSNYLN TTTRTDSSLN HGMTPNIGDS GFLQCLEEAG QGNPLNKTFV KVYKSGSFGR SLDITKFSSY HELRGELARM FGLEGELEDP VRSGWQLVFV DRENDVLLLG DGPWPEFVNS VWCIKILSPQ EVQQMGNNGL ELLNSFPIQR LSNGICDDYV SRQDPRNLGT GITTVGSLDY // ID A0A0B2SRI3_GLYSO Unreviewed; 286 AA. AC A0A0B2SRI3; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KHN46837.1}; GN ORFNames=glysoja_015088 {ECO:0000313|EMBL:KHN46837.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN46837.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN46837.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN46837.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN640956; KHN46837.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 286 AA; 32887 MW; D4F452CE860D5799 CRC64; MIPNKFVEKY GEGLPNALFL KTPNGTEWNF NLEKHDGKIW FQKGWKEFAE YHSLAHGHLL VFRRHGTSHF QVHIFDLSSL EIDYPSKGTE GKTSPNHEGN KQPRNEENLE YLQPYQVRSH KSVKVENMMT LPEEAQPHTD TKFKEKSKVV VANQVTALDL ASSFKPCNPF FLVVMRPSYI QSNGGPLPLQ TKFCRRHFGL LNNRHINLQV LNGRIWPAKY MIQKMKNKTN FRLTSGWKTF VKDNNLKVGN VCTFELIDGT KLTLLVHIFR GTNGSNCSTS QGRIDI // ID A0A0B2STM1_GLYSO Unreviewed; 375 AA. AC A0A0B2STM1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 12-APR-2017, entry version 14. DE SubName: Full=B3 domain-containing transcription factor LEC2 {ECO:0000313|EMBL:KHN47602.1}; GN ORFNames=glysoja_050043 {ECO:0000313|EMBL:KHN47602.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN47602.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN47602.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN47602.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN640444; KHN47602.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 258 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 375 AA; 42451 MW; 7AE70A436C2847E6 CRC64; MENFLVPFFK KNPNPLITTT GGTGSSSSNQ TSLVQPSIYP QNFPYNTSEK LNFPEQPYFI PLYPFPTGQV SFSNQPYGMP NSELQGSRAC MTKATRERWR QVRQRSKNST PVASNSVQEG TTREQFVPNG GSNVRITVKQ HNATKFFNTP NGKKLEEILT KKLNKSDVGV LGRIVLPKRE AEDKLPTLWK KEGINIVLKD VYSEIEWSIK YKYWTNNKSR MYILDNDFVN HYKLQTGDFI TLYKDELKNL YVSARKDQEN LEESKSSSNT GMSHEPDAYL AYLTKELGHK GKAEAANNLL NNVEEEAPNQ ANQLHQFMPM NNIVGEGASN QAIEEAAPAA PINVDQENKV VDNDDDVIYG GLDNIFEIGN TYQIW // ID A0A0B2SUI1_GLYSO Unreviewed; 354 AA. AC A0A0B2SUI1; DT 04-MAR-2015, integrated into UniProtKB/TrEMBL. DT 04-MAR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=B3 domain-containing protein REM21 {ECO:0000313|EMBL:KHN48598.1}; GN ORFNames=glysoja_034221 {ECO:0000313|EMBL:KHN48598.1}; OS Glycine soja (Wild soybean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN48598.1, ECO:0000313|Proteomes:UP000053555}; RN [1] {ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RX PubMed=25004933; DOI=10.1038/ncomms5340; RA Qi X., Li M.W., Xie M., Liu X., Ni M., Shao G., Song C., RA Kay-Yuen Yim A., Tao Y., Wong F.L., Isobe S., Wong C.F., Wong K.S., RA Xu C., Li C., Wang Y., Guan R., Sun F., Fan G., Xiao Z., Zhou F., RA Phang T.H., Liu X., Tong S.W., Chan T.F., Yiu S.M., Tabata S., RA Wang J., Xu X., Lam H.M.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Nat. Commun. 5:4340-4340(2014). RN [2] {ECO:0000313|EMBL:KHN48598.1, ECO:0000313|Proteomes:UP000053555} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000053555}; RC TISSUE=Root {ECO:0000313|EMBL:KHN48598.1}; RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.; RT "Identification of a novel salt tolerance gene in wild soybean by RT whole-genome sequencing."; RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KN639434; KHN48598.1; -; Genomic_DNA. DR Proteomes; UP000053555; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053555}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053555}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 41664 MW; E61945B89E25F50D CRC64; MRKNTKQLRT RKRMRMRIRM MMMTTIIMSI KKWKKKVKKK IVLNTRGVKL IIVEPAKLIP DAFVKSTRLQ GWRIPEDVIL TNVGRRVWNV KTRLVGNKIY FEEGWKVFQE ENFLGKEDYL VFKYDGANIF KVVILEQSSR CERTEAEEED EVIEITDDEE HEEAEDDEDE GDDDDQYREM EEEHSAEYMR SQSHPRRASK RLSATSCSPA VEGPHLEDYE FDPQMYIQPG NPNFEAKLFK NRPNELHVPK NVIKDSSLTF GEQITLSRCQ CFQFEDTQRD ELRDYHGLPQ WTPIYSEVAK VSEWRDGRVC IKGWTSFCKK NKINKNDACI CEIISGEDRI IRTIQVHVLG ARNG // ID A0A0D2K5W5_9CHLO Unreviewed; 251 AA. AC A0A0D2K5W5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KIZ05738.1}; GN ORFNames=MNEG_2226 {ECO:0000313|EMBL:KIZ05738.1}; OS Monoraphidium neglectum. OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; OC Selenastraceae; Monoraphidium. OX NCBI_TaxID=145388 {ECO:0000313|EMBL:KIZ05738.1, ECO:0000313|Proteomes:UP000054498}; RN [1] {ECO:0000313|EMBL:KIZ05738.1, ECO:0000313|Proteomes:UP000054498} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SAG 48.87 {ECO:0000313|EMBL:KIZ05738.1, RC ECO:0000313|Proteomes:UP000054498}; RX PubMed=24373495; DOI=10.1186/1471-2164-14-926; RA Bogen C., Al-Dilaimi A., Albersmeier A., Wichmann J., Grundmann M., RA Rupp O., Lauersen K.J., Blifernez-Klassen O., Kalinowski J., RA Goesmann A., Mussgnug J.H., Kruse O.; RT "Reconstruction of the lipid metabolism for the microalga RT Monoraphidium neglectum from its genome sequence reveals RT characteristics suitable for biofuel production."; RL BMC Genomics 14:926-926(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK100463; KIZ05738.1; -; Genomic_DNA. DR RefSeq; XP_013904757.1; XM_014049303.1. DR GeneID; 25735104; -. DR Proteomes; UP000054498; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054498}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000054498}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 25 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 27015 MW; E057FBB1C6CBC126 CRC64; MAAEAEAQAA AVLEQLQRVG AKVFFEKQLT SSDVSASGRV VVPKAMAEQY FPKLDNPAGI SLEVEDAHGE TYTLRWRFWI NNQSRMYLLE GTADLQHRYH LKMGDVLIFA QKGDKDKAVV LAGRPATRAD AMRKAAAAAR KPSPTPAGGG GGKGGAGRNK DKAIKERNRR AAMRRHGVNP EDVEPPADGV FRAVPSDSMA DAPNAVSQVR AGRWLASLNL AGELYQAFFP NEDQAAEAIL LSGFTQPDVS A // ID A0A0D2LZ04_GOSRA Unreviewed; 337 AA. AC A0A0D2LZ04; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB09572.1}; GN ORFNames=B456_001G150200 {ECO:0000313|EMBL:KJB09572.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB09572.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB09572.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB09572.1; -; Genomic_DNA. DR EMBL; CM001740; KJB09573.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38734 MW; 1493468EFF7E0B80 CRC64; MMDLSLGSCN NIEESNTGSS RCIEKEYMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS SNEKGLLLNF EDRNGKSWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGVGE SGKHRLYIDW RRRPNAPNPT SFAHFQMQNQ FNFPQSVRWG GGIYSLPQSY EPLHRLNYSI YPYNHHHQRQ QHQQLQQQQH QAITYGNVAQ SQYYLRSSSS GSYHHHHHHQ PHQTGAMQEG RVEPMVIESV PVVQGNKTAA KRLRLFGVNM ECPTPTTDES SSSSPHATIV SDHDSPYFPS SSLQSRLPNN NTPFPLSRMQ AEYSKKGKSS LSFDLDL // ID A0A0D2LZ42_GOSRA Unreviewed; 603 AA. AC A0A0D2LZ42; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G153900 {ECO:0000313|EMBL:KJB09637.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB09637.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB09637.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB09637.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 603 AA; 66993 MW; 816C4FD7CED28B9B CRC64; MANVQVNPRG SSIAHSESGS SDDDLYAELW KLCAGPLVEI PRNHERVFYF PQGHMEQLEA STNQELNNQA PLFNLPSKIL CRVIHVQLLA ELETDDVYAQ ITLQPEADQS EPTSPDPCPA EAPKRTVNSF CKILTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL AAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGARR LARQQTTMPS SVISSQSMHL GVLATAAHAV TTQTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM RFEGEDTPDR RFTGTIVGVG DFSPHWSESK WRTLKIQWDE PATIQRPERV SPWEIEPFAP SASINLVQPA VKNKRPRPVD IPVSEITTNS AGSTFWGRGS TQSHELTQVG STPEIQSSES QVMWGMRQKE ADYSRGYNSN AWPHSPLVNV SLNLFPNSVS DKNRTEKPQT TLTGYALPSL SRPSKGLMHD QVEKGKKSET STGCRLFGFN LTDTISAVIP TDKEQTNTTV DHNGVWGSLA AASHIDQNPE TAKQKHVAAE ASSKEMQAKQ GASTTSTRSR TKVNIRVSTC LYLHCFFIIE VPD // ID A0A0D2M514_GOSRA Unreviewed; 353 AA. AC A0A0D2M514; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB12217.1}; GN ORFNames=B456_002G006500 {ECO:0000313|EMBL:KJB12217.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB12217.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB12217.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB12217.1; -; Genomic_DNA. DR RefSeq; XP_012450169.1; XM_012594715.1. DR GeneID; 105773078; -. DR KEGG; gra:105773078; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 40567 MW; 40E8A48F5E71D188 CRC64; MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF KDELSVAAAL TVPDGHVWRV GIRKGDNKVW FQEGWPEFLD RYYIRIGYFL IFRYEGNSAF SVSIFNLYNS EINYQSNALL GSQYNHGKSY PFDELEDDEC MSSAMQHLFG GSKLNHCVNW SGEVNLNAAK SANNQPIRVK LRTSGSETPP PKKPGRKKQK FDPNDQDLSV GHEDDSEMRY RFYESASARK RTVTAEERER AMNAAKAFEP SNPFCRVVLR PSYLYRGCIM YLPSCFAEHL SGVSGFIKLQ LPDGKQWSVR CLYRGGKAKF SQGWYEFTVE NNLGEGDVCV FELLRSREFV LKVTVFRVMD GAGLMHRSQY NAN // ID A0A0D2M527_GOSRA Unreviewed; 436 AA. AC A0A0D2M527; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB12232.1}; GN ORFNames=B456_002G007600 {ECO:0000313|EMBL:KJB12232.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB12232.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB12232.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB12232.1; -; Genomic_DNA. DR RefSeq; XP_012450378.1; XM_012594924.1. DR GeneID; 105773209; -. DR KEGG; gra:105773209; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 180 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 180 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 378 419 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 436 AA; 49748 MW; 485A49B630E9C862 CRC64; MAVSPKQRIS SLKQVSRGRG RPPKTKLFRK KVPAMTVNQI VSYEKEKAQC NKRKRATYDE VYENGQTKLA VMERALDIQA NLSSEFPSMI KYMLPSHVTG GFWLGLPKHF CLNHLPKEDR MMVLEDEEGK EFQVKYLVEK IGLSGGWRGF SIAHKLLEGD VCVFHLVRPS KFKVYIVRKK CSDEVDVALG LLKLESSTQL VDNGKELKIC EISVGKTEDR NAPILYSSNI ERTVDQSKNN RVDLGSEVSD GVRLSDSIVN FREVKSFEDF NILVNGLVID SEFSKYLQMK YYELCCNQNS FLHENLLEGL NCKLVAGVIA ETINIADAIR AAKLTTPHDS FLTWDKTLRS FEGLGMKVGF LRARLDKLMN LLTKSRRYKE VKLEQANSNE EKLKLEAKLA EVTHTLTKLD REIRLFKQEK ADDLEALFRE VANGPW // ID A0A0D2M7D2_GOSRA Unreviewed; 120 AA. AC A0A0D2M7D2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB13202.1}; GN ORFNames=B456_002G061900 {ECO:0000313|EMBL:KJB13202.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB13202.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB13202.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB13202.1; -; Genomic_DNA. DR RefSeq; XP_012468654.1; XM_012613200.1. DR GeneID; 105786703; -. DR KEGG; gra:105786703; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 97 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 120 AA; 13877 MW; 8250B82A7F0C5516 CRC64; MPSFEKCLTE VDVNKQVAIP SDFVQHLPDY EGGRTITFPV HDVSGNLWEN FGYYIRKGDD YPKPVFQKDW RKYVRVKGLR PGDKIIFRVE RNGDNGAPIY TIAAQKKIEL LGFPIWGPEF // ID A0A0D2M7X9_GOSRA Unreviewed; 426 AA. AC A0A0D2M7X9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB13432.1}; GN ORFNames=B456_002G075900 {ECO:0000313|EMBL:KJB13432.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB13432.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB13432.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB13432.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 273 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 273 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 426 AA; 47478 MW; 22E0F82CD91F8269 CRC64; MAAPTVFIGT CFHCQSQSDV FFSGWQLRDG SFALLCHPCG KVWYCFAGAF YPPFVNSAFL FPLLRIMFEE QAEEKWSRNP GVCCHSLSSH TIYCFLSYRR LSSAFVEGRF CETFHPEASG WRECDSCNKG IHCGCIMAAH SYAILDFGGV KCLECCLNEA LALHRNSPTF SNPEEMQASD SHPKASDDTE ETVTGVDPIA SPDSVALNAS PDKIGTPTPG AVPAAETEGE SSVNSPAGTK KSRKKKGRKN RKDASKQHQI QARAKSSLIP LFEKKLTASD VDTRNGRLVL PKRCAEISGQ QGIFLTVQDT KGNDWEVFYR YWSNTNGKMY VLEGLKDYMI MMEWEAGDTV TFYKREEDEK LFMGFKKYQA PESAQKASSL NLVLFIEGVG SSFLYMLSSV SELLLSRKMQ VIGMNDKKTK AYILSE // ID A0A0D2M8N6_9CHLO Unreviewed; 700 AA. AC A0A0D2M8N6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KIY97441.1}; GN ORFNames=MNEG_10522 {ECO:0000313|EMBL:KIY97441.1}; OS Monoraphidium neglectum. OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; OC Selenastraceae; Monoraphidium. OX NCBI_TaxID=145388 {ECO:0000313|EMBL:KIY97441.1, ECO:0000313|Proteomes:UP000054498}; RN [1] {ECO:0000313|EMBL:KIY97441.1, ECO:0000313|Proteomes:UP000054498} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SAG 48.87 {ECO:0000313|EMBL:KIY97441.1, RC ECO:0000313|Proteomes:UP000054498}; RX PubMed=24373495; DOI=10.1186/1471-2164-14-926; RA Bogen C., Al-Dilaimi A., Albersmeier A., Wichmann J., Grundmann M., RA Rupp O., Lauersen K.J., Blifernez-Klassen O., Kalinowski J., RA Goesmann A., Mussgnug J.H., Kruse O.; RT "Reconstruction of the lipid metabolism for the microalga RT Monoraphidium neglectum from its genome sequence reveals RT characteristics suitable for biofuel production."; RL BMC Genomics 14:926-926(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KK102570; KIY97441.1; -; Genomic_DNA. DR RefSeq; XP_013896461.1; XM_014041007.1. DR GeneID; 25727693; -. DR Proteomes; UP000054498; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054498}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000054498}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 635 700 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 635 700 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 427 488 {ECO:0000256|SAM:Coils}. FT COILED 492 519 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 700 AA; 72723 MW; A7CE3C4206816B43 CRC64; MDYQHYRDGG VAPHLAPRGQ GAASTTGTKR AAEAFPQKSA GGLQQAESLQ GPSKRLCAPQ QCDSAVSSIT TWGPHAGNGG GAGGDLPLWR TLSSSTSAPA AAAATASAAM TPQDMALRDA PAGGSFSAGA PPPSMMRVGS SMGGGAALQQ LRWPQQPSTS QPAASLLLEP GTGMDATVAA VAAAAAAMQR HASGGGGGAA DGGRLLPPAA AASCGSSNKM VSPFTSGVLA CTAALWPQEL RYLSAVGTAR QHSAALPLRT ASAPILSNGL SAGAGAAVAA NAALAAAANA APAAPAGLRG GMEGPAQQYQ LPMPRPLVSR LASEAPAPAG PGGGDFRHLQ RGYSAPITQL LLQQQALQQQ LIASAGAGAR GGAPSGGAAA PQLEQAPRLD LVGAGSLQRQ SSLMQQQASL QHQAPLQQQT SLQHPQLLAQ QQQQQQQQQQ QQQQQQQAAL QQQQQQQQQQ QQQQHQQQQQ QQQQQQQQQA AIQQLTTQQS LVKQESSQQQ QQQQQQQQQQ QQQQQQQQQA PLPLVRQPSR REQQQQKQQA KQQPAAPAAE AVPAAGAAPG ADGPRGTAGE AQGAGARGAP SSTDDKTVKM SRAISCKAYL KRLNITQPMA EALLPEMQLA TAPRGGSCAS GQGASKHYEL LFKRELVYEG AVCNTQRHLR LTSGWRDFVR AHNVLVGDTV VFERRGDDRS TLYTSIKRAA // ID A0A0D2MAI5_GOSRA Unreviewed; 175 AA. AC A0A0D2MAI5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB14567.1}; GN ORFNames=B456_002G131600 {ECO:0000313|EMBL:KJB14567.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB14567.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB14567.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB14567.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 19859 MW; A9F47F1DFEE9FF54 CRC64; MKLRTVEKQL VVVRRSSRVA NKPAPVYQEV LVDKVMIPRR VSKHRDLSNR VYASDEARAE ALEKAEKLES GLDPHFPVFI KSMLQSHVTG GFWLGLPVHF CKTNLPKRDE VMTLVDEEGH EYPTIYLAKK TGLSGGWKGF AVAHRLVDGD AIVFQLLQRT TFKVYIIRVK GSEQS // ID A0A0D2ME76_GOSRA Unreviewed; 131 AA. AC A0A0D2ME76; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB16157.1}; GN ORFNames=B456_002G215500 {ECO:0000313|EMBL:KJB16157.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB16157.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB16157.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB16157.1; -; Genomic_DNA. DR RefSeq; XP_012467821.1; XM_012612367.1. DR GeneID; 105786091; -. DR KEGG; gra:105786091; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 131 AA; 15249 MW; 000BD5AA0F0B28D0 CRC64; MATIVSKRLR KTDIQKRMTI PSKSLNCFPA LSGNEHMVDF DVRDECGHVW KFRIYTRKSN NKYRKPVLTK GWREFVCRKE LSIDDKVEFY MDKQQADGSA EYRVTVQKAV KVFGAIFAHK PFPGEVSNDI V // ID A0A0D2MI58_GOSRA Unreviewed; 575 AA. AC A0A0D2MI58; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17862.1}; GN ORFNames=B456_003G020000 {ECO:0000313|EMBL:KJB17862.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17862.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17862.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17862.1; -; Genomic_DNA. DR RefSeq; XP_012469504.1; XM_012614050.1. DR GeneID; 105787585; -. DR KEGG; gra:105787585; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 243 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 394 494 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 243 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 394 494 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 575 AA; 65131 MW; A781F4995754168A CRC64; MASSSYRQGN DHLKFISNSP HFFKIILQDT IQNGKLGVPR KFVKNQGNSM SSPAMLSVPS GEVWKVELTK CNGKIWFENG WLEFSNHYSL DFGHLLVFRY DGNSNFHVVI FDRTATEILY PYTRYNHIHR RSNIDKSKDD DSTPNLEDIS TSRKLREKSQ MPCPQPCKMM HSTNSAIKTE IECDGKSEFL AQQIRYEGCP ARNGDKSTRH RVIQQLKPHE KDDALERASK TFKSENPFFL VVMQPSYVGL SHSKGYRLAI PANFVRKHLM KELCSITLCN SSGKTWIVTF KNNQIGKKQT SYLLTGWGTF VHDNNVRVGD ACAFELINSI EISFNVVIYQ GPHTKCYQSL SSTDIIRPMK RKDQSYASPS GSETLTALEK AKAFQVASAF KSEYPFFISV LQPSYSRRMN IPVIFARKYL AKMHKEAILL LSNGKSWPVI YCQHKIESTG ANAIFGSGWR RFSHDNKLEV GDSCVFELIM AAETSMKVTI YKKQAVKDSS LADNSREKQV ELHESSVIGT KSALMNEKED TSNLLLDYNC DASGETLDDI LISNLSSPGK ALEEASQSYQ SFTRE // ID A0A0D2MI64_GOSRA Unreviewed; 432 AA. AC A0A0D2MI64; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17867.1}; GN ORFNames=B456_003G020400 {ECO:0000313|EMBL:KJB17867.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17867.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17867.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17867.1; -; Genomic_DNA. DR RefSeq; XP_012469509.1; XM_012614055.1. DR GeneID; 105787588; -. DR KEGG; gra:105787588; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 326 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 326 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 48704 MW; 3BF37273117E9869 CRC64; MTRKPKRSPS FFKVLIGDFD NKLRIPPAFV KYVLKGNVPT MFTLYSDSGN SWRVRVMVEQ GSYFFNSGWS KFVKHHDLEI GDFLVFFLVD TSTFDVLIYN GTACAKNIIL AAKKRKCLPP LANRQIEETP SQKCASVSKK PRAVYRARSV SQEVESITEV TRKHVSFVMV VKKYHKYFAC VPRCFAKETG LLKESITLIK GPRGGMWPMN TTECGKQVRL GGGWSRFLHE NEIVVGDTLL FEHIPSKGNL VHVQIVNKDR YRNRGRRNKQ ADASVKNTSP AAKRPRVRPG KQIEEPPSTK HAPSSKRTKG VSIGNDEIVS ELTPKKASFV MVLKEYQKYS AVVPTSFAKE MGLAEKPSTI IKNSKGRKWL LNTIVDAKSQ VRLGAGWSQF VQENKLELGD TLLFQHIPNT GNVINLTIIC KVGDGNNRKR NK // ID A0A0D2MKI1_GOSRA Unreviewed; 398 AA. AC A0A0D2MKI1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB18882.1}; GN ORFNames=B456_003G073600 {ECO:0000313|EMBL:KJB18882.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB18882.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB18882.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB18882.1; -; Genomic_DNA. DR RefSeq; XP_012470360.1; XM_012614906.1. DR GeneID; 105788151; -. DR KEGG; gra:105788151; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 398 AA; 44380 MW; FD5E740CC0154D71 CRC64; MDFGFNEEGN KFPFSYSSSS SSPSSSSSQH KTQMAPPLSN TRWEAQAHQI HDGHHRQMSP NWLNNRYEPE EDNEAATATA STEADSTLSA SAANIEKEHL FDKVVTPSDV GKLNRLVIPK QHAEKHFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFQRGV GELGKHRLFI DWRRRPDGPD PVSFHPHTHH LSLHRSNTPW SPLLMRPPPT ARDRFQLSQI NPLNRNSYYG GFPTGNNVVN PGGTMGSVLF FRSAAAPTME WQQQPGGVVE PIVFDSVPVV QGTGAAAAKR LRLFGVNMEC PIPESHNPDM LSTTTIPNAT MASQNPQLSS SSQHPLQLRL YNGTPVLPPI DFLSANKGKA SFSLDFDI // ID A0A0D2MKQ5_GOSRA Unreviewed; 696 AA. AC A0A0D2MKQ5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G078000 {ECO:0000313|EMBL:KJB18967.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB18967.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB18967.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB18967.1; -; Genomic_DNA. DR RefSeq; XP_012470427.1; XM_012614973.1. DR RefSeq; XP_012470428.1; XM_012614974.1. DR GeneID; 105788203; -. DR KEGG; gra:105788203; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 664 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 77861 MW; CB52A02CD1BD9372 CRC64; MANRGGVFSQ TNNVSSEVKG NGGDDLYMEL WKLCAGPLVE APRARERVYY FPQGHMEQLE ASTNQELNQR IPLFNLPSKI LCSVVHIQFL AEQETDEVYA QITLMPEPNQ PEPTTPDACP PEPPKPTVCS FCKVLTASDT STHGGFSVLR KHATECLPPL DMNQATPTQE LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ESGELRVGVR RVARQQSSMP TSVISSQSMH LGVLATASHA VSTQTLFVVY YKPRTSQFII GLNKYLEALN NKFTVGMRFK MRFEGEDSPE RRFSGTIVGV EDFSPYWKDS KWRSLKVQWD EPASIPRPDR VSPWEIEPFA APIPPTLGQP VAAKNKRPRP TAEIPALELP STASAPWNSG VMHTHDLMRR NITAEANRNE NHVIWHMQTE MSSSCSSVLK TQNEGSWLSS PCMSVSKHRF PDARDDSKCA SGWPVLSGLS NPQVNNDSTF DPIEKVKKSE TASSCRLFGI ELINHSASSR QLERTPTQLS TMTASTAEGH HTLSPNNSCQ KSEISKDSNE KQEQLQLQAK EIQSRQSCPS STRSRTKVQM QGVAVGRAVD LAMLEGYDQL IDELEEMFDI KGELRPRNKW EIVYTDDEGD MMLVGDDPWQ EFCSMVRRIF ICLSQDVKKL STGSKLPMAC IEGGEGTVIS SESIEN // ID A0A0D2N589_GOSRA Unreviewed; 240 AA. AC A0A0D2N589; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB07713.1}; GN ORFNames=B456_001G040300 {ECO:0000313|EMBL:KJB07713.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB07713.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB07713.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB07713.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 240 AA; 27520 MW; 4DF5BD0885B6A3DE CRC64; MSNALFSPTI PHFFQPLLPG FHLSIPLSFF KDYLKGQINC ESAVLRSYGR TWSVKIRDRR FEDGWQDFAR DHDLHVGDFL VFRYGGNMVF DVVVFDTSAC QRQYPLLATQ TQQPAKEIGK QHEKRTSTSV TLESPHFVSN LTLESMKSFR LNIPRKFARS NDLDRSCETV LVDEQGRSWM ASIRLKDSDG QVYIGRGWRN ICIGNSLGLK DCVKLELIGN GITPIFKLYS CKRLRCQKVA // ID A0A0D2NA06_GOSRA Unreviewed; 412 AA. AC A0A0D2NA06; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G153900 {ECO:0000313|EMBL:KJB09638.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB09638.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB09638.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB09638.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 46190 MW; BDE6B0F72887118F CRC64; MANVQVNPRG SSIAHSESGS SDDDLYAELW KLCAGPLVEI PRNHERVFYF PQGHMEQLEA STNQELNNQA PLFNLPSKIL CRVIHVQLLA ELETDDVYAQ ITLQPEADQS EPTSPDPCPA EAPKRTVNSF CKILTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL AAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGARR LARQQTTMPS SVISSQSMHL GVLATAAHAV TTQTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM RFEGEDTPDR RFTGTIVGVG DFSPHWSESK WRTLKIQWDE PATIQRPERV SPWEIEPFAP SASINLVQPA VKNKRPRPVD IPVSGVGKLL FQVFGIESWL LTLLTLIDLL KM // ID A0A0D2NAK5_GOSRA Unreviewed; 535 AA. AC A0A0D2NAK5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB29522.1}; GN ORFNames=B456_005G105400 {ECO:0000313|EMBL:KJB29522.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB29522.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB29522.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB29522.1; -; Genomic_DNA. DR EMBL; CM001744; KJB29526.1; -; Genomic_DNA. DR EMBL; CM001744; KJB29527.1; -; Genomic_DNA. DR RefSeq; XP_012478061.1; XM_012622607.1. DR RefSeq; XP_012478062.1; XM_012622608.1. DR RefSeq; XP_012478063.1; XM_012622609.1. DR GeneID; 105793765; -. DR KEGG; gra:105793765; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 226 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 428 524 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 226 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 428 524 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 535 AA; 60596 MW; 87295F7C70FBCCD0 CRC64; MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRVSASV LLKGPSGYSW NVKLVQRNDD LLFDEGWADF VADHSLECGD FLVFRYDGDL VFEVKVFDQS SCEKEVAFHC KCSQAGSVFN GILGQKRYRE EEDVSLDQDC EELLKRIRQS SSESVRDEEH CGRELILATT SCQGLTSCDE NHDGTILKIT GKEDDLNLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT LNIPYQFAME HLPNCKTELV LQNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA GDICIFELVH KFEFRVHILR VGQEDLDRQS RKAVLDRSDS TLLKKLVKNT SKVHSKLKKV QICDNKGSKV LDKWKYGNAA KKSASFVLCS LSRSGTEKQE AAISGLRMMM TVDEEKAARS FASRFPSFVR IMRKFNISGS YTLKIPYKFS KEHLPYCKTQ VVLRNLQGKC WTVNSLPDSK GRAVHTFCGG WMAFVRDNEI KIGDICIFEL VNNYEMRVHI SGPGRKGLDR QHTSL // ID A0A0D2NGB6_GOSRA Unreviewed; 435 AA. AC A0A0D2NGB6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB12233.1}; GN ORFNames=B456_002G007600 {ECO:0000313|EMBL:KJB12233.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB12233.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB12233.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB12233.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 377 418 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 435 AA; 49620 MW; ECB9374EDA5BB5C5 CRC64; MAVSPKQRIS SLKVSRGRGR PPKTKLFRKK VPAMTVNQIV SYEKEKAQCN KRKRATYDEV YENGQTKLAV MERALDIQAN LSSEFPSMIK YMLPSHVTGG FWLGLPKHFC LNHLPKEDRM MVLEDEEGKE FQVKYLVEKI GLSGGWRGFS IAHKLLEGDV CVFHLVRPSK FKVYIVRKKC SDEVDVALGL LKLESSTQLV DNGKELKICE ISVGKTEDRN APILYSSNIE RTVDQSKNNR VDLGSEVSDG VRLSDSIVNF REVKSFEDFN ILVNGLVIDS EFSKYLQMKY YELCCNQNSF LHENLLEGLN CKLVAGVIAE TINIADAIRA AKLTTPHDSF LTWDKTLRSF EGLGMKVGFL RARLDKLMNL LTKSRRYKEV KLEQANSNEE KLKLEAKLAE VTHTLTKLDR EIRLFKQEKA DDLEALFREV ANGPW // ID A0A0D2NHL9_GOSRA Unreviewed; 119 AA. AC A0A0D2NHL9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32352.1}; GN ORFNames=B456_005G241300 {ECO:0000313|EMBL:KJB32352.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32352.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32352.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32352.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13839 MW; EF7E13022D7495C8 CRC64; MKELCSKILT ATDVGVRFSF PTATMREHFK LLEGSQSLDF QVMDKYSKVW TFRLYTRKND GHPKPVLTKG WLDFVKRMGL KVGDKVIFVL HGNHNDHLGI LVKRNIKLLG SEHWADFFM // ID A0A0D2NHT8_GOSRA Unreviewed; 343 AA. AC A0A0D2NHT8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32442.1}; GN ORFNames=B456_005G240900 {ECO:0000313|EMBL:KJB32442.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32442.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32442.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32442.1; -; Genomic_DNA. DR RefSeq; XP_012480290.1; XM_012624836.1. DR GeneID; 105795280; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 238 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 238 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39789 MW; 61D570A8FB869ABF CRC64; MPRPFFHKLI LSTTLQDKKL RIPDNFIKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKAW FKEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFDLYNS EINYQTNALV GTQYNLGRQY PFEELEDDEC VSPAMPNLFG RSKLNCINWS GEVNHHAPKG VNNQPIRGAE LPKLKKPGRK KQKFQPSEED SSLGHEDDME MRNRFYESAS ARKRIVTAEE RERAINAAKA FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA EQHLSGVSGF IKLQLPDGRQ WPVRCLYRGG RAKFSQGWYE FTLENNLGEG DVCVFELLRS REFVLKVTVF RVMESAGLMD RSQ // ID A0A0D2NM47_GOSRA Unreviewed; 945 AA. AC A0A0D2NM47; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_002G124400 {ECO:0000313|EMBL:KJB14423.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB14423.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB14423.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB14423.1; -; Genomic_DNA. DR RefSeq; XP_012465955.1; XM_012610501.1. DR GeneID; 105784599; -. DR KEGG; gra:105784599; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 828 912 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 945 AA; 104093 MW; 1A489D9AD306C2F2 CRC64; MGSVVEEKIK QGGLVNVGAQ STLLEEMKLL KEMQDQSGTR KAINSELWHA CAGPLVSLPQ VGSLVYYFPQ GHSEQVAVST KRMATSQIPN YPNLPSQLMC QVHNVTLHAD RDTDEIYAQM SLQPVNSEKD VFPIPDFGLK LSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPSLDY SMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK SQLLVGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI PLPRYRKSVY GSQVSVGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE WDEPGCNDKQ NRVSAWEIET PESLFIFPSL TSSLKRPLYP GFSGAESEWG SLMKRPLLQF PENGNGNLPY SMSNLCSEQL MKMMLKPQLV NHPGIFASPL HQIADVKVPP LEEMKNLQSK SHTKPQVIQS ENMLIENRNL SHPVPDQPDP ITSNMSKINA NGNPHPANIL TQAGTGSSNE KLKLESKHSA EQLTSTSECN EEKLVASTVN TTMSNQLSFP TQPHIPLQVQ NNPWSIQSQL DSSVLQAHQM LVSQADISTL NSFLPFSDTD EWTSNLSSCQ PLSGAYKSPG PIPMVGLQDS SAVFPVETDD SLTTVGEEIW DQKLNNCRVS SQADQLASFT QQDPCSLNSG GVRDLSDDSN NQSGIYSSCL NIDVSNGCST VIDPFVSSAI LDEFCSLKDA DFQNPSDCLV GNFSSCQDVQ SQITSASLAD SQAFSRQDLP DSSGGNIDFD DSGLLQNNSW KQTGPRVRTY TKVQKAGSVG RSIDVTSFKN YDELISAIEC MFGLKGLLDD PRGSGWKLVY VDYENDVLLV GDDPWEEFVG CVRCIRILSP TEVQQMSEEG MKLLNSAATV QGINGSNSEG SNANA // ID A0A0D2NML4_GOSRA Unreviewed; 140 AA. AC A0A0D2NML4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB14568.1}; GN ORFNames=B456_002G131600 {ECO:0000313|EMBL:KJB14568.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB14568.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB14568.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB14568.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 140 AA; 15840 MW; 67C9622ED4E06D68 CRC64; MIPRRVSKHR DLSNRVYASD EARAEALEKA EKLESGLDPH FPVFIKSMLQ SHVTGGFWLG LPVHFCKTNL PKRDEVMTLV DEEGHEYPTI YLAKKTGLSG GWKGFAVAHR LVDGDAIVFQ LLQRTTFKVY IIRVKGSEQS // ID A0A0D2NQV4_GOSRA Unreviewed; 793 AA. AC A0A0D2NQV4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G120400 {ECO:0000313|EMBL:KJB35562.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB35562.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB35562.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB35562.1; -; Genomic_DNA. DR RefSeq; XP_012485239.1; XM_012629785.1. DR GeneID; 105799306; -. DR KEGG; gra:105799306; -. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 668 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 88605 MW; 0422AD3C3A6AC679 CRC64; MEIDLNHALS EVEKTAVCNG GCDKLNCVCS SSSSNLASPP CTSSIYLELW HACAGPLTSL PKKGNLVVYF PQGHLEQLAS ASPFSPLEIS TFDLPPHIFC KVVNVQLLAN KENDEVYTQL TLLPQPELRE PNLESKQLDE LGVDEGDDGS PKRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQTRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLVAG DAVLFLRGED GELRLGIRRA VRPRNCLPES VIAKQNSYLN VLSPVANALS MKSMFHVFYS PRASHAEFVI PFRKYFKSIA NSVCIGTRFK MRFDMDDSPE RRFSGVVMGM GDSDPYKWPN SRWRCLMVRW DEDNMIDRHE RVSPWEIDPS ASLPPFSIQS SPRLKKLRTG PQAATPDTLI AGGSRFLDFE EPLRSSKVLQ GQENVGFVSP LYGRDTVSRP LDFEMQSPAH HQSLASTGIE KSNISEFMRV RSTTYTGFAD SNRFPKVLQG QEICQLRSLT QKADLNPGVW AKTNLGCNSF NMHQTLRTNC YPLASEGLRN MYFPYGEFLK TVQEPTMSSY ACPLRRGNVP FNASSIRTGV GVIVDGFRKP NQQNEHKPLE NIPSPASENN LRNQQDDSFK RNVAGCKLFG FPLNVESPTP NSQNSGKRSC TKVHKQGSLV GRAIDLSRLY GYDDLMIELE HLFGMEGVLS DPDKGWRVLY TDGENDVMVV GDDPWHEFCE VVSKIHVYTQ EEVEKMTIGT GSDDTQSCLE QAAVIMEASK SSSVGQPDSS SPM // ID A0A0D2NS15_GOSRA Unreviewed; 272 AA. AC A0A0D2NS15; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB16528.1}; GN ORFNames=B456_002G234300 {ECO:0000313|EMBL:KJB16528.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB16528.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB16528.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB16528.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 102 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 272 AA; 30499 MW; 9E8C77A7905D3490 CRC64; MIILEKRLSK TDINRRLAVP MEYFNMEHFP KPGASLEGNP REDFVVKDEK GCVWNLSCSI RKQPNHPKPV LINEWIHFVQ SKKLREGDKV IIYGEQDETG LMQLRIKAEK CTGSYEDPCF PFMNQNPDRN KGLSSHSSSS ESTATFQPSE TEDHSAEYHL ADVLNHELGR ITATTTPSIT KEHIPTNHST SQDIARHKTK GPRLSPSVEL TLKPATTEGM TAGTSSSIDK NLAPTFHSHS QDIGSYNTET PNLSLNLGLT LKPTYMQDTT HK // ID A0A0D2NV22_GOSRA Unreviewed; 334 AA. AC A0A0D2NV22; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17833.1}; GN ORFNames=B456_003G020700 {ECO:0000313|EMBL:KJB17833.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17833.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17833.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17833.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 37999 MW; 3EAE3AD15CDE31C7 CRC64; MTRKPKRNPS FFKILIGNFD KKQRIPPAFV KYIFKGNVPT MLTLYSDSGN SWRVRIKVEQ GSYFFNNGWS KFVKYRDLEI GDFLVFFLVD SSTFDVFIYN RTACAKIIIL AAKKQKGRSP RVSRQIEQTP SHKCTSTSKK PRTVPRAQEV EFVSGVTPKS VSYVMVVKGY NKYYAGIPRC FTEEAGLGKV SMVMIKGPSG MWPMMTTFSS KQVLLSVGWS KFLHENEIVI GDTLLFEYVP NTGHLIHVQV VNKDGTGNCG SLAGKRPRDR PREQTELPPS TKYASSYKRT KGVSELILEQ ASFVVVLKKY HQYSVSVPAS FLPKKQAWQR NRAR // ID A0A0D2NV50_GOSRA Unreviewed; 431 AA. AC A0A0D2NV50; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17863.1}; GN ORFNames=B456_003G020000 {ECO:0000313|EMBL:KJB17863.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17863.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17863.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17863.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 243 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 243 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 49216 MW; 60F1A8F614752945 CRC64; MASSSYRQGN DHLKFISNSP HFFKIILQDT IQNGKLGVPR KFVKNQGNSM SSPAMLSVPS GEVWKVELTK CNGKIWFENG WLEFSNHYSL DFGHLLVFRY DGNSNFHVVI FDRTATEILY PYTRYNHIHR RSNIDKSKDD DSTPNLEDIS TSRKLREKSQ MPCPQPCKMM HSTNSAIKTE IECDGKSEFL AQQIRYEGCP ARNGDKSTRH RVIQQLKPHE KDDALERASK TFKSENPFFL VVMQPSYVGL SHSKGYRLAI PANFVRKHLM KELCSITLCN SSGKTWIVTF KNNQIGKKQT SYLLTGWGTF VHDNNVRVGD ACAFELINSI EISFNVVIYQ GPHTKCYQSL SSTDIIRPMK RKDQSYASPS GSETLTALEK AKAFQVASAF KSEYPFFISV LQPSYSRRMV SVSVETCHPF QSSYYSTMRM I // ID A0A0D2NV54_GOSRA Unreviewed; 201 AA. AC A0A0D2NV54; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17868.1}; GN ORFNames=B456_003G020500 {ECO:0000313|EMBL:KJB17868.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17868.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17868.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17868.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 201 AA; 22801 MW; F0A1C2A3364AA575 CRC64; MAASHQQGND HLKFISNSPC FFKIILQDTI QNGKLGIPRK FVRNHGNSMS SQQAQAWKVE LTKCGGKIWF ENGWLEFSNH YSLELGHLLV FRYDGNSNFH VIIFDRTASE IQYPYTSNNQ KQSNEIPKQN INESKTECNG KSGFLAQQVS HNGCPAVKGD KRTNHPVIQR MKGREKVKAL EKAINTFKSK NPFFPGSRSK G // ID A0A0D2NY14_GOSRA Unreviewed; 694 AA. AC A0A0D2NY14; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G078000 {ECO:0000313|EMBL:KJB18968.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB18968.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB18968.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB18968.1; -; Genomic_DNA. DR RefSeq; XP_012470429.1; XM_012614975.1. DR GeneID; 105788203; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 581 662 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 77634 MW; 0BF76F75F384C783 CRC64; MANRGGVFSQ TNNVSSEGNG GDDLYMELWK LCAGPLVEAP RARERVYYFP QGHMEQLEAS TNQELNQRIP LFNLPSKILC SVVHIQFLAE QETDEVYAQI TLMPEPNQPE PTTPDACPPE PPKPTVCSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM NQATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGES GELRVGVRRV ARQQSSMPTS VISSQSMHLG VLATASHAVS TQTLFVVYYK PRTSQFIIGL NKYLEALNNK FTVGMRFKMR FEGEDSPERR FSGTIVGVED FSPYWKDSKW RSLKVQWDEP ASIPRPDRVS PWEIEPFAAP IPPTLGQPVA AKNKRPRPTA EIPALELPST ASAPWNSGVM HTHDLMRRNI TAEANRNENH VIWHMQTEMS SSCSSVLKTQ NEGSWLSSPC MSVSKHRFPD ARDDSKCASG WPVLSGLSNP QVNNDSTFDP IEKVKKSETA SSCRLFGIEL INHSASSRQL ERTPTQLSTM TASTAEGHHT LSPNNSCQKS EISKDSNEKQ EQLQLQAKEI QSRQSCPSST RSRTKVQMQG VAVGRAVDLA MLEGYDQLID ELEEMFDIKG ELRPRNKWEI VYTDDEGDMM LVGDDPWQEF CSMVRRIFIC LSQDVKKLST GSKLPMACIE GGEGTVISSE SIEN // ID A0A0D2P1A1_GOSRA Unreviewed; 686 AA. AC A0A0D2P1A1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G142500 {ECO:0000313|EMBL:KJB20298.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB20298.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB20298.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB20297.1; -; Genomic_DNA. DR EMBL; CM001742; KJB20298.1; -; Genomic_DNA. DR RefSeq; XP_012471518.1; XM_012616064.1. DR GeneID; 105788951; -. DR KEGG; gra:105788951; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 654 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 108 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 75534 MW; 295D91047B0FD784 CRC64; MKESDKSLDP QLWHACAGPM VQIPPLNSKV FYFPQGHAEH SLAAVDFPSS PPVPALVLCR VASLKFMADT ETDEVYAKIL LMPLPNTELD LEHVAVFGSD NAEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPPLDYT EDPPVQTVVA VDVHGETWKF RHIYRGTPRR HLLTTGWSTF VNHKKLVAGD SIVFLRSENG GLCVGIRRAK RGTGNGPEAG SPFLSFLRED ESKMMMMNRN GDWRGKGKLK AEAVLQAATL AASGQPFEVV YYPRASTPEF CVKASSVKAA MRVPWCCGMR FKMAFETEDS SRISWFMGTV SSVQVVDPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNVPAVH LSPFSPPRKK SRFPQHLDFP LDGQFPMSAF SSNGNPHGTG CPLVLSDNAP AGIQGARHAQ FGLSLSDLHL NNKLQSGLFL PGFQRFDPHS RISDGIMMAR RPNGTDNLSC LLTIGNSNVN EKSGNTKRHQ FLLFGQPILT EQQLSRSCSS EVVSQVINGN SSLDGSAEKT KDTSDGSRSS LEKSSTAGFL WHQDYRSTET GLDIGHCKVF LDSEDVGRTL DLSVLGSYEE LYRRLANMFG IERSKMLGHV LYRDATGAVK QTGEEPFSAF MKTAKRLTIR MDSSNETVAR SWLTGIRTAE NGLGGPSKRG PLSIFA // ID A0A0D2P1Z8_GOSRA Unreviewed; 885 AA. AC A0A0D2P1Z8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB20513.1}; GN ORFNames=B456_003G152700 {ECO:0000313|EMBL:KJB20513.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB20513.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB20513.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB20513.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 353 454 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 581 631 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 353 454 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 885 AA; 97711 MW; C9ADEFD80A38AAA5 CRC64; MTLKGDLILI FDFDLSSLCW MGSKICMNSS CGAATSNEWK KGWPLRSGGF AHLCYPCGSA YEDGVYCDTF HLEESGWREC RICGNHLHCG CIASNYLLEL LDYGGVGCIS CAKSSRLHTV KRIQTHGDEI PEGVGAVPMN NAGSSAVEGK AVSDHVDERT LAPLCKSMEA NECNLLPQSQ RGDANASLGQ HRGEEVICPT EKVGAGFSNA TQPYVRPANF AKLDNARSAL DVRDIQDSLP QPYLSMSLGG SSANPNFLLP FSSGLADGKE PSKTWSSFQQ GQQSRRILPK PSKNGLTTSS ELNKGMIPQA RITRPPVEGR GKNHLLPRYW PRITDQELQK LSGDLKSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQSEGLPL RIQDVNGKEW TFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI DPGGKLVMGF RKAANSDTQT PKGGKDLLGN ALSEHFGLPD GNISRSRDED HGVRANENSV HQLAMNAEKK KTRNIGSKSK RLLMHSVDAL ELRLTWEEAQ DLLRPPPSVR PSIVTIEDHE FEEYDEPPVF GKRTIFGAWP SGEQEQWAQC DDCSKWRRLP VDVLLPSKWK CSDNVWDSSR CACSAPEETG PKELENILKV GTDLKKAKVQ ESPKVAPEPE PTGLDALASA AVLGDKMGDV GESSVGATTK HPRHRPGCTC IVCIQPPSGK GKHKANCTCN VCLTVKRRFK TLMLRKKKRQ SEREAEISER DNKKQMDETE LKDTRNDHSE NEGSRSRIEG EVAEASTGEI DLNCHPIRED VQLEGGLNMM SFVEATSLPV ENYIKQNGIE SLKTEQQQQG SLGSHFQSKV NRENERPLSD EEFLASVGWE HVGHKEPCLE RNSLQ // ID A0A0D2P744_GOSRA Unreviewed; 633 AA. AC A0A0D2P744; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41547.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41547.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41547.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41547.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 633 AA; 70621 MW; 0CF0F727BF726304 CRC64; MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE APKRKVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRYLD IWIFFFVCVC MQVQGWHFCM TLAVIALACP IRGDNGELRV GVRRLARQQS TMPSSVISSQ SMHLGVLATA AHAVTTHTLF VVYYKPRTSQ FIIGVNKYLE AINNGFSVGM RFKMRFEGED SPERRFTGTI VGVGDISPHW SESKWRSLKI QWDEPAAIQR PERVSPWEIE PFVASASTNA QPTIMCKRPR PVDIPASEIT TSSAGSAFWC RESIQSHELT PVGSTLEVQS SENQVMWPMR QKEADNCLIN GNGGYKSRTP PENAWPPSPL VNVSLNLFPD SMENNYKTGA LQTALTGYAK GLMHDQVEKR KTETFTGCRL FGFNLTDSTS VAAPPDKEQT STSIDYNGVR GHVPAAFHVE QKPETSKEQK QVASETSTQE MQAKQGSATS MRSRTKVNFT VSASLDCIHY SSS // ID A0A0D2P895_GOSRA Unreviewed; 705 AA. AC A0A0D2P895; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G131900 {ECO:0000313|EMBL:KJB41997.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41997.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41997.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41997.1; -; Genomic_DNA. DR RefSeq; XP_012490461.1; XM_012635007.1. DR GeneID; 105803057; -. DR KEGG; gra:105803057; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 603 686 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 705 AA; 79627 MW; 036AFCDE6D57672D CRC64; MDGERNGLKA KVPFHPRRRI NVYGLPLLPP NNQGEKDDLH VELWHACAGP SVYVPRAGEK VLYFPQGHIE QVDACMNQDG IMEMPIYNLP SKILCRVMHV QLKVEPGTDE VFAQITLIPE AEQDEESLEH RNYQPLPQKA YPVFFSKKLT PSDTSTHGGF SIPKRHVDDG CLPPLDMSQQ TPQQELVAID LHGFEWRFRH IYRGQPKRHL LTSGWSTFLT SKKLLAGDEF IFLRGEKGEL RLGIRRATTV LKYTSTSIIS GHSMRHGILA SAFHAFSTRS MFNVNYRPWS TSSEFIISLD RYMKSAQIDY CIGTRFRMRL EGEECAEQRP SGTIISIEDV DHTRWPNSEW RCLKVKWYPT AGENFHPERV CPWNIEPTEF RIKKRPSILH NQKKARTDDV SSPGFSTLLM DGMWSGSIKY ESQSSSGVLQ GQEDSDTDGN QPDALRQPLP HCLPLNHSWD SMQQPIQNQR EIGAAPFSGG QVESLGLHNS WSTTFSSSNG VHEDAIASRK ISVPNVNSQE GSISEPRNEN ETSWCEPNEG HACMLFGVNL VNGPLEPPSP QLVTSSELES HCSIPPTSQS TVSKPSKGTS SKQCDNCCSA SNWSCTKVLK HGTALGRSVD ITRFDGYKDL ISELDRMFDF NGRLIDGSSG WHVTFTDDEG EMRMIGDHYP WQKFQNEVRR MLINPKEEIG RVNQSSLMAP YDEVF // ID A0A0D2PCS3_GOSRA Unreviewed; 336 AA. AC A0A0D2PCS3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43592.1}; GN ORFNames=B456_007G208600 {ECO:0000313|EMBL:KJB43592.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43592.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43592.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43592.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 39094 MW; CBB109B06EF9CD5D CRC64; MAATTQKCRV LEKNKYWKEF ESNRHQFFKI LVGDFRNHLR VPKKFTENFR EKLLGTIHRR GPSGFMWTVE VEKMFNHVVF QNGWPTFVEE HRLEKADLLV FRYIGNSAFN VVIFDSSGCV REGSYFVREH TNACSNDGCV LDKEDGEDCE DIIDLEKPHI QKRKIKKGRG RPSSKAVDAD NQKKRPRVIK SAVEGEVSID EPDGAPGCAM EDCVEQNLQG SYSLYFILKR REITEEEKQR PRKLSRQRTL LRVPPQNKVW DVRIRSSIWG TAFTRGWAKF VLDNNLGSHD TCVFELSDEG KANGYTMVFD VIIFRVLDEI VPLKKFSRTQ TRTAWF // ID A0A0D2PKE4_GOSRA Unreviewed; 1068 AA. AC A0A0D2PKE4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G017000 {ECO:0000313|EMBL:KJB07334.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB07334.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB07334.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB07334.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1000 1068 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1068 AA; 119590 MW; 73326CE47751B478 CRC64; MKAPPNGFLA NPAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFVPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYDREALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELAARD LHENTWTFRH IYRGQPKRHL LTTGWSVFVS NKRLFAGDSV LFIRDEKSQF LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEECGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP FYICPPPFFR PRFPKQPGMP DNDNDVENAF KRAMPWLGDD FGMKDSPNSI FPGLSLVQWM NMQQNNQLAA AQSGLFPSMV SSNPLHNSLG TDDPSKLLNF QAPVLPASNM QFNKANPNQV NQLSHAPMTW PQQQQLQQLL QTPLNQNPLQ QQSQQQLQQR QSQLQPQSHL QQQPQPPLQQ QQQQQQQQRQ QAQPQPQQQQ PPLQQLQQQQ RQQAQPQLLQ QQFLPAQVNN GIIASNQMPN RNLHQPGVYS QVQQQQQQQQ ILTSNGQSTQ TTLPANKASY PLTSLAQDTQ IQQQVEQQPN LVQSQQQQTQ LQQNLSQRSQ QQPQIQQLAQ QGLPEQQFQL LQKLQQQQQQ QQSSQQLLSP TGSLSQSPVV QQQPMHQQNQ PMQQVPLSQS QQTLGSNGFS TSMLMQPQQL VVSQSQNQNK PLMAMRTHSG LTDGDAPSCS TSPSTNNCQV SPSSFLSRSQ QVPSMVVTDP VVEPASTLVQ ELQSKPDIRI KHELLASKGP DQSKYKSTVT DQLEASSSGT SYCLDAGTIQ HNFSLPTFLE GDVQSHPRNN LPFSANIDGL APDTLLSRGY DSQKDLQNLL SNYGSNPRDI DTELSTAAIS PQSFGVPNIP FKTGCSNDVA INDAGVLNGG LWANQTQRMR TYTKVQKRGS VGRSIDVTRY KGYDELRHDL ARMFGIEGQM EDPQSSDWKL VYVDHENDIL LVGDDPWE // ID A0A0D2PLI6_GOSRA Unreviewed; 257 AA. AC A0A0D2PLI6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB07714.1}; GN ORFNames=B456_001G040300 {ECO:0000313|EMBL:KJB07714.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB07714.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB07714.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB07714.1; -; Genomic_DNA. DR RefSeq; XP_012455444.1; XM_012599990.1. DR GeneID; 105776964; -. DR KEGG; gra:105776964; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 29192 MW; D558D13FB8D2C2F3 CRC64; MSNALFSPTI PHFFQPLLPG FHLSIPLSFF KDYLKGQINC ESAVLRSYGR TWSVKIRDRR FEDGWQDFAR DHDLHVGDFL VFRYGGNMVF DVVVFDTSAC QRQYPLLATQ TQQPAKEIGK QHEKRTSTSV TLESPHFVSN LTLESMKSFR LNIPRKFARS NDLDRSCETV LVDEQGRSWM ASIRLKDSDG QVYIGRGWRN ICIGNSLGLK DCVKLELIGN GITPIFKLYK VASDSDAKKL PNCSGSNAVV QEDQPEF // ID A0A0D2PM56_GOSRA Unreviewed; 860 AA. AC A0A0D2PM56; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G054600 {ECO:0000313|EMBL:KJB07944.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB07944.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB07944.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB07943.1; -; Genomic_DNA. DR EMBL; CM001740; KJB07944.1; -; Genomic_DNA. DR RefSeq; XP_012467386.1; XM_012611932.1. DR GeneID; 105785774; -. DR KEGG; gra:105785774; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 737 821 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 860 AA; 95417 MW; 591191B1B0B81740 CRC64; MTNTEVAMKG NCVNGRGGGE SFSSGYSEPK DGRNTVEGQN GHSTNQAPAI DPETALYNEL WHACAGPLVT VPREQDRVFY FPQGHIEQVE ASTSQVADEQ MPVYNLPSKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ DENTVNKEPP APQPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AYTTKTIFTV YYKPRTSPAE FIVPFDQYME SMKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDADPKK WKDSKWRCLK VRWDETSTIP RPERVSPWKI EPALAPPALN PLPMPRPKRP RSNAVPSSPD SSVLTREGSS KAIVDPSPAT GFSRVLQGQE FSTLRGNFGE SHESDTAEKS VIWRPTVDDE KIDVVPTSRR FGSENWMSSG RHEPAAYADL LSGFRSNADS SLGYCPPLVD QTSLAGNPMR RQLLDQEGKL GSWSLMSSGL SLKLVDSNAK PSVQGSEVPY QARGNGRFSG FGEYPVLQGH RIEHPHGNWL MPPPTSSNYE NPIQSRDLMP KASLGQDHEN GKSREGSCKL FGIPLISNSV ASEPTVSPIN ATNKAASHVE AAPNQARTFT FDQKSEQPKF SPLAENLSIF NEQEKSFQPG QPHTREVQSK SPSASTRSCT KVLMQGSALG RSVDLTKFNN YDELIAELDQ LFEFGGELMA PKKNWLVVYT DDEGDMMLVG DDPWQEFCTM VRKIGIYTRE EVQKMKPGSL NSKGEDNLVS AEGLDAKDVK CTSASSTENC // ID A0A0D2PNN6_GOSRA Unreviewed; 119 AA. AC A0A0D2PNN6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB47837.1}; GN ORFNames=B456_008G044600 {ECO:0000313|EMBL:KJB47837.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB47837.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB47837.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB47837.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 89 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 119 AA; 14146 MW; 171BDD5171F9373C CRC64; MEVFIKRLTK TDIEKRLAIP TNSLEHFLGF NGRQGAYLKV KDRSHRLWTF WCSVRKTSYP KPVFSSGWLQ FSHHYNLRIG DKITLRKQLK RDVSNGVQYK IEVQRKINLF GKDVWAHVL // ID A0A0D2PQB0_GOSRA Unreviewed; 719 AA. AC A0A0D2PQB0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48487.1}; GN ORFNames=B456_008G071200 {ECO:0000313|EMBL:KJB48487.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48487.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48487.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48487.1; -; Genomic_DNA. DR RefSeq; XP_012436968.1; XM_012581514.1. DR GeneID; 105763317; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 332 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 494 594 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 332 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 494 594 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 719 AA; 81044 MW; 019194C1B48BF908 CRC64; MFTPKTPHFF KIILDANIRD KKLEIPGKFV RKYGNGLSNS VLLTVPSGDT WHVELTKSDG IVWLQNGWQE FSEYFSLKYG HLLVFKYEGN GKFLVLIFDT SASEIEYPCK SHIEDQESDD QMCLKPVKEE PKDDVCDKPL HGTPSCKETK RKKSRSLCSN AEYLCKSYID DHKSDDQLCL KPVKEEAKDG VYDETLYETP PCKKARRTKS QSQCSKIEYP CKSHIEDHKS EDQVSLKPVK EEAKDDVCDK TLYETPPCKE TRKKKPQSQC SKPRKKLKTA QKDKNRKDCE DASTDEEGLQ TKVPRDGRAF GAIEYDKALQ RAFSFESENP FFLVTMQPSY INPGRKMCIP KNFTMKFLTR DLGDLTLCTS DGRTWSAQYL CYMTRNKYTK ATIHIGWRQF MLDNNLEAGD VCVFELISQT EIMLKVIIYR VRQDASCSSP LGGINSLENG DNVSSSTPGS TESKHHCSIR SLTPHEKARA IQKASNFKSK NPFFKVVMQP RYLTIRCSLS IPYKFVNQYL DEEKEEAILQ VSDGRTWVVK FAVKVVTGGQ HKAEFSHTWR AFARDNNLEV GDVCVFELIN RNENSFKVSI FSEAPGANSS LSPQAHDVKA SQVASKNCSV PKIEADDDFG NCYAGNPGPA AQPTTIGHQE NEEEVNPTDD AIASQVASKD FLVPKVEVDD DFGKCYAGNF SPAAQITTTG YQEAEEEVKP TISTGPRGP // ID A0A0D2PQB5_GOSRA Unreviewed; 481 AA. AC A0A0D2PQB5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48492.1}; GN ORFNames=B456_008G071600 {ECO:0000313|EMBL:KJB48492.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48492.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48492.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48492.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 376 474 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 376 474 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 481 AA; 54309 MW; 60603CF6721A2D37 CRC64; MFTSKTPHFF KVILQETLRD GILGIPRKFV RKYGNQLSSP VKLEVPSGAI WQVELAKTDE RVRLQNGWRE FAEHYSLELG SFVVFRYEGN DHFHVLIFDK SASETEYPHT STEGNDVSRK SKEKSHLPCP LPQKKMRIDA SNQHEQNSKL EVLSSGTSPD AQRSVKTKAF SCVQRLAAIE KAHAVQIASA FESTENPVFM IVMQPSYVRG RMFIPSDFAR KFLTVHKSNL TLCNSTGKTW HAKLYYPANK KPNAHLYGGW REFVEDNHLN VGDICVFELI KYPEILMKTR SSVQHCKMTR TSLSGSIQAK GIKHEKGKSL NFQYSTEELG GGLKNSAKGD SGRKSGARRC LKPDPVYQKR RACTGGGAFR TSNPSFSVVI HPSHVGSCST VHIPEEFGKR YLKKSGEMML RVADGRSWNV EYERRGRSKG RKAVFGGKSW GQFAMDNELE VGDVCVFELM NENGNLLEVV IHRKLLLVEI N // ID A0A0D2PR20_GOSRA Unreviewed; 533 AA. AC A0A0D2PR20; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB29523.1}; GN ORFNames=B456_005G105400 {ECO:0000313|EMBL:KJB29523.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB29523.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB29523.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB29523.1; -; Genomic_DNA. DR RefSeq; XP_012478064.1; XM_012622610.1. DR GeneID; 105793765; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 226 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 426 522 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 226 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 426 522 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 533 AA; 60396 MW; 1FB5D92BED2AFF04 CRC64; MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRVSASV LLKGPSGYSW NVKLVQRNDD LLFDEGWADF VADHSLECGD FLVFRYDGDL VFEVKVFDQS SCEKEVAFHC KCSQAGSVFN GILGQKRYRE EEDVSLDQDC EELLKRIRQS SSESVRDEEH CGRELILATT SCQGLTSCDE NHDGTILKIT GKEDDLNLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT LNIPYQFAME HLPNCKTELV LQNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA GDICIFELVH KFEFRVHILR VGQEDLDRQS RKAVLDRSDS TLLKKLVKNT SKVHSKLKKV QICDNKGSKV LDKWKYGNAA KKSASFVLCS LSRSGTEKQA ISGLRMMMTV DEEKAARSFA SRFPSFVRIM RKFNISGSYT LKIPYKFSKE HLPYCKTQVV LRNLQGKCWT VNSLPDSKGR AVHTFCGGWM AFVRDNEIKI GDICIFELVN NYEMRVHISG PGRKGLDRQH TSL // ID A0A0D2PRZ9_GOSRA Unreviewed; 639 AA. AC A0A0D2PRZ9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G153900 {ECO:0000313|EMBL:KJB09639.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB09639.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB09639.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB09639.1; -; Genomic_DNA. DR RefSeq; XP_012480949.1; XM_012625495.1. DR GeneID; 105795828; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 524 616 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 639 AA; 70959 MW; ED0108299EE5C2CA CRC64; MEQLEASTNQ ELNNQAPLFN LPSKILCRVI HVQLLAELET DDVYAQITLQ PEADQSEPTS PDPCPAEAPK RTVNSFCKIL TASDTSTHGG FSVLRKHATE CLPPLDMNQA TPTQELAAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGDNGEL RVGARRLARQ QTTMPSSVIS SQSMHLGVLA TAAHAVTTQT LFVVYYKPRT SQFIIGVNKY LEAIKNGFSV GMRFKMRFEG EDTPDRRFTG TIVGVGDFSP HWSESKWRTL KIQWDEPATI QRPERVSPWE IEPFAPSASI NLVQPAVKNK RPRPVDIPVS EITTNSAGST FWGRGSTQSH ELTQVGSTPE IQSSESQVMW GMRQKEADYS RGYNSNAWPH SPLVNVSLNL FPNSVSDKNR TEKPQTTLTG YALPSLSRPS KGLMHDQVEK GKKSETSTGC RLFGFNLTDT ISAVIPTDKE QTNTTVDHNG VWGSLAAASH IDQNPETAKQ KHVAAEASSK EMQAKQGAST TSTRSRTKVQ MQGIAVGRAV DLTVLKGYDD LINEVEKMFD IKGELRPSGK WSVVFTDDEG DMMLVGDDPW MDFCKMVRKI FIYSSEEVKK ISPRCKFAVS SLEGEGTAVT IDSEHKSET // ID A0A0D2PTF4_GOSRA Unreviewed; 762 AA. AC A0A0D2PTF4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB10104.1}; GN ORFNames=B456_001G184300 {ECO:0000313|EMBL:KJB10104.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB10104.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB10104.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB10104.1; -; Genomic_DNA. DR RefSeq; XP_012484530.1; XM_012629076.1. DR GeneID; 105798851; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 620 722 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 620 722 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 762 AA; 85133 MW; 940C8B6BC16AA2BC CRC64; MRGVQQQQQQ QKMGGEDVHA VGGNEGNPSG FDDVVVEVER VMGSEEREMW LDRQQDDELL DVNDASIFYG DFPPLPDFPC MSSSSSSSST PAPVKAVACS SSASTASSSS SAASWAVLKS DADEDMERKS NGHHIHLHHH HHQNYIQNSH QQEHHGKVDG TPAALSSTAS MEIPQPPDQN VMDGVDCMDV MENFGYMDLI DNNDLFDPSS IFHHDDTGLE EFQQDQQNQQ QQEHDSTQQQ LGKQVGAMMY SKNEDQTQEE KASDDLAMVF LEWLKTNKET VSAEDLRRVK IKKATIECAA RRLGGGKEAM KQLLKLILEW VQTNHLQRRR IKESASNNHP DHPCQYSNPN NLNPSSNPNL NCNPILPSEP NSFFSQPAWV PQPAYTTDPG AAPPPLPGFT PVVGYMGDPF ANGAPNVTTH HHPYRPPTDY QVLDTAQTWP PSQFALAASQ YNSFADNNLH PAPLQQQPSA FPGYVNQYPY QYVPGHNNND QRLLRLGSSA TKEARKKRMA RQRRFASHHR NHGHHHNNQQ SQLQNQSIDQ HERIVNGNCV AAAQANPGNW VYWPSVAGAL ASNPPSVLPG DVTMVHPVDQ TTMQGQTYQR QVATDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISIAME DIGTSRVWNM RYRFWPNNKS RMYLLENTGD FVRTNGLQEG DFIVIYSDVK CGKYLIRGVK VRQSGTKSET KRPGKSQKNH HTNSPSAAVS GSLPTPITQT VK // ID A0A0D2PU43_GOSRA Unreviewed; 370 AA. AC A0A0D2PU43; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB49662.1}; GN ORFNames=B456_008G132400 {ECO:0000313|EMBL:KJB49662.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49662.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49662.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49662.1; -; Genomic_DNA. DR RefSeq; XP_012437859.1; XM_012582405.1. DR GeneID; 105763985; -. DR KEGG; gra:105763985; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 370 AA; 42614 MW; F4D921C75028D7CE CRC64; MMNFVEEEEE KGYYCNNEDQ EEDDEEVVMI REISSNNFPF SSSSSSSVSS KYKDAAAAAV HLSLGTFDSK QDHNKTQQQS GFDFDKKQDL VMDLSLGNHK NNDHEESCYE SVEKEHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS IEKGLLLNFE DRNGKTWRFR YSYWNSSQSY VMTKGWSRFV KEKKLVAGDT VSFQRGVGEL VKARLYIDWK LRPNALDPSP FAHIQLRNQF NFLQPVRWEP ICMSRNYQPL HRLNYSIDPY NHRHHHHFQH QHQQQAITYS SMSQYYQIGA LQGEPMVIDS VPVIEANNNK ASAKRLRLFG VNMDCPNPTQ DESSSSIPLS NTQAEYSNKG KSSLSIVLGL // ID A0A0D2PUM8_GOSRA Unreviewed; 802 AA. AC A0A0D2PUM8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G204500 {ECO:0000313|EMBL:KJB10499.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB10499.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB10499.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB10499.1; -; Genomic_DNA. DR RefSeq; XP_012488004.1; XM_012632550.1. DR GeneID; 105801219; -. DR KEGG; gra:105801219; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 802 AA; 89348 MW; A5DF7A49E259921D CRC64; MSEETKLDMK LSSSGQGQQA HEGENKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAATTNKEVD THIPNYPDLP PQLICQLQNV TMHADVETDE VYAQMSLQPL TPEEQKDTFL PMELGIPSKQ PTNYFYKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFSQQP PAQELIARDL HDIEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVIPSSVLSS DSMLIGLLAA AAHAAATNSC FTVFYNPRAS PSDFVIPLSK YVKAVFHTRV SVGMRFRMLF ETEESSVRRY MGTITGISSL DPVRWPNSHW RSVKVGWDES TTGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWHPGSS SLFDNRDDIS NGLSWLRGGS GEQGLQSLNL QSICSHPWVQ QKLDLSFPGN DYNLQYQHML ANGLQNLGSG DLLRQQLQQS FQYVQQPGSH NLLLQQQQQQ QQQSVSQLVP HNIVQAQQSQ ILIEGFLPVP GREQVGNQSE ELAQQQHNMT QSDQHQQRRP VNVPSFLKPD FIDSGSGPPV LDMLGSLCPE SSANLLNFST TGQSMLADQL PQLSWAPKYA HSDVNAFAGS TSGPQVSPGK DATIELDIGT SDAQNSTVFG VNDDSFGLLL PTSMHGFTTS SSEADMPSIP LGDPSFQNPL YGCMQYSSEL QSTGQVDPPT SSQTFIKVYK SGSVGRSLDI SRFSSYHELR EELAQMFGIE GKLEDPLRSG WQLVFVDREN DILLLGDDPW EAFVNNVWYI KILSPEDVQK MG // ID A0A0D2PXK4_GOSRA Unreviewed; 226 AA. AC A0A0D2PXK4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB11709.1}; GN ORFNames=B456_001G273500 {ECO:0000313|EMBL:KJB11709.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB11709.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB11709.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB11709.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 226 AA; 26147 MW; 6B4FBAD7F1FE9838 CRC64; MSKDPLEVCP GEFISRLYFP RFPTQVIDPK RLRFLFQKEL KNSDVSSLRR MILPKRAAEA HLPVLESKEG ILISMDDLDG LHVWSFKYRF WPNNNSRMYV LENTGEFVST HGLQLGDFIM VYQDSLNQNY VIQAKKASDE DVYSDIARNG VNDLFLHDYE ATKSSNYYYP MMEDNGMSFI YDTTLSFSND CPLDFLGGSM TNYSRMGSLE SFGSVENLSL DEFYQL // ID A0A0D2PY98_GOSRA Unreviewed; 128 AA. AC A0A0D2PY98; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32298.1}; GN ORFNames=B456_005G241200 {ECO:0000313|EMBL:KJB32298.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32298.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32298.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32298.1; -; Genomic_DNA. DR RefSeq; XP_012481134.1; XM_012625680.1. DR GeneID; 105796037; -. DR KEGG; gra:105796037; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 128 AA; 14784 MW; 861A7BE3B7DEBA32 CRC64; MHMQSSESEP VMKELCSKIL TATDVGVRFS FPTATMREHF KLLEGSQSLD FQVMDKYSKV WTFRLYTRKN DGHPKPVLTK GWLDFVKRMG LRVGDKVIFV LHGNHNDHLG ILVKRNLKLL GSEHWGDL // ID A0A0D2PYM0_GOSRA Unreviewed; 273 AA. AC A0A0D2PYM0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32388.1}; GN ORFNames=B456_005G238700 {ECO:0000313|EMBL:KJB32388.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32388.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32388.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32388.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 194 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 194 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 31281 MW; 118F869FF00F7423 CRC64; MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMENIRDC RQKASRKRPR DKNYNDHVVK GTKRVSEQDF AKSPVIERAE QVQANLSAEF PSFFKIMIPS VVCRGFWMSL PKEFCQLNLP NHDATVILVG ETGKEYRINF LVQRKALSGG WKKFSKEHGL LVGDALVFHL IRPSKFKVYI VRMNGLDEID AALGLLRLQS SANQTGICLF LGPKKTSQRM ALWMLAPVKW KALGLLRLLA LQMPLELPRF PPCDLVSCRG TTL // ID A0A0D2PYS7_GOSRA Unreviewed; 849 AA. AC A0A0D2PYS7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G210200 {ECO:0000313|EMBL:KJB51282.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB51282.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB51282.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB51282.1; -; Genomic_DNA. DR EMBL; CM001747; KJB51284.1; -; Genomic_DNA. DR EMBL; CM001747; KJB51290.1; -; Genomic_DNA. DR RefSeq; XP_012439048.1; XM_012583594.1. DR GeneID; 105764826; -. DR KEGG; gra:105764826; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 726 810 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 849 AA; 94578 MW; 3FBAADF2BE1645B6 CRC64; MKGNCVNVRG GESCSSGYSE SMDARKTMEG QNGHSTHQAA IRDPETALYT ELWHACAGPL VTVPREGERV FYFPQGHIEQ VEASTNQVPD QHMPVYNLPS KILCRVINVQ LKAEPDTDEV FAQVTLLPEP TQDENTVDKE SPVPQPPRFH VHSFCKILTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP TQELVAKDLH GNEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAFTTKTIF TVYYKPRTSP AEFIVPFGQY MESLKNNYSI GMRFKMRFEG EEAPEQRFTG TVVGIEDADP KRWQDSKWRC LKVRWDETSS IPRPERVSPW KIEPPLAPPA LNPLPMPRTK RPRSHAVPSS PDSSVLTREG SSKVTIDPSS ASGLSRVLQG QEFSTLRGNF AESIESDTAE KSVMWPPSVD DKNNDVVSAS RRFPSENWMS SGRHERTCTD LLTGFGSNAE SLHGYCSSLV DQTLVAGNST RKQSLHQEGK LGSWSLMPSG LSLKLADTNA KSPLQGSDVP YQMRGNGRCS GFDDYPILQG HRIEHSHGNW LMPPPTSSHH ESNPVQSRDL MPKTSFVQGH ENGKYREGNC KLFGIPLIRN SVASEPTVSH TNALSKPVAH MQAASHQVLE FVSAQNSEKL KVLQLAEVED LSNYNEQEKQ PRTREIQSKP SSASTRSCTK VHKQGIALCR SVDLTKFNDY DELIAELDGL FEFKGELMAP KKNWLVVYTD DEGDMMLVGD DPWQEFCAMV RKIGIYTREE VQKMKPGSLS SKGEDNSVST GGVDGKEMMC PSASSAENC // ID A0A0D2PYT0_GOSRA Unreviewed; 443 AA. AC A0A0D2PYT0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB12234.1}; GN ORFNames=B456_002G007600 {ECO:0000313|EMBL:KJB12234.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB12234.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB12234.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB12234.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 385 426 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 443 AA; 50678 MW; 3414962613169291 CRC64; MFYVCMYVFS EVPKACKLSQ QVSRGRGRPP KTKLFRKKVP AMTVNQIVSY EKEKAQCNKR KRATYDEVYE NGQTKLAVME RALDIQANLS SEFPSMIKYM LPSHVTGGFW LGLPKHFCLN HLPKEDRMMV LEDEEGKEFQ VKYLVEKIGL SGGWRGFSIA HKLLEGDVCV FHLVRPSKFK VYIVRKKCSD EVDVALGLLK LESSTQLVDN GKELKICEIS VGKTEDRNAP ILYSSNIERT VDQSKNNRVD LGSEVSDGVR LSDSIVNFRE VKSFEDFNIL VNGLVIDSEF SKYLQMKYYE LCCNQNSFLH ENLLEGLNCK LVAGVIAETI NIADAIRAAK LTTPHDSFLT WDKTLRSFEG LGMKVGFLRA RLDKLMNLLT KSRRYKEVKL EQANSNEEKL KLEAKLAEVT HTLTKLDREI RLFKQEKADD LEALFREVAN GPW // ID A0A0D2PYW0_GOSRA Unreviewed; 315 AA. AC A0A0D2PYW0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32443.1}; GN ORFNames=B456_005G240900 {ECO:0000313|EMBL:KJB32443.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32443.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32443.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32443.1; -; Genomic_DNA. DR RefSeq; XP_012480291.1; XM_012624837.1. DR GeneID; 105795280; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 36681 MW; 2AEA809B6468EE99 CRC64; MPRPFFHKLI LSTTLQDKKL RIPDNFIKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKAW FKEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFDLYNS EINYQTNALV GTQYNLGRQY PFEELEDDEC VSPAMPNLFG AELPKLKKPG RKKQKFQPSE EDSSLGHEDD MEMRNRFYES ASARKRIVTA EERERAINAA KAFEPTNPFC RVVLRPSYLY RGCIMYLPSC FAEQHLSGVS GFIKLQLPDG RQWPVRCLYR GGRAKFSQGW YEFTLENNLG EGDVCVFELL RSREFVLKVT VFRVMESAGL MDRSQ // ID A0A0D2PZC9_GOSRA Unreviewed; 577 AA. AC A0A0D2PZC9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G153900 {ECO:0000313|EMBL:KJB09636.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB09636.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB09636.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB09636.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 462 554 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 577 AA; 64260 MW; 3F754FDD25527532 CRC64; MANVQVNPRG SSIAHSESGS SDDDLYAELW KLCAGPLVEI PRNHERVFYF PQGHMEQLEA STNQELNNQA PLFNLPSKIL CRVIHVQLLA ELETDDVYAQ ITLQPEADQS EPTSPDPCPA EAPKRTVNSF CKILTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL AAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGARR LARQQTTMPS SVISSQSMHL GVLATAAHAV TTQTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM RFEGEDTPDR RFTGTIVGVG DFSPHWSESK WRTLKIQWDE PATIQRPERV SPWEIEPFAP SASINLVQPA VKNKRPRPVD IPVSEITTNS AGSTFWGRGS TQSHELTQVG STPEIQSSES QVMWAASHID QNPETAKQKH VAAEASSKEM QAKQGASTTS TRSRTKVQMQ GIAVGRAVDL TVLKGYDDLI NEVEKMFDIK GELRPSGKWS VVFTDDEGDM MLVGDDPWMD FCKMVRKIFI YSSEEVKKIS PRCKFAVSSL EGEGTAVTID SEHKSET // ID A0A0D2Q1F5_GOSRA Unreviewed; 904 AA. AC A0A0D2Q1F5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G008700 {ECO:0000313|EMBL:KJB33383.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB33383.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB33383.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB33383.1; -; Genomic_DNA. DR RefSeq; XP_012483462.1; XM_012628008.1. DR GeneID; 105798094; -. DR KEGG; gra:105798094; -. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 764 848 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 904 AA; 99917 MW; F08D5EF884DFAF99 CRC64; MRLSSSGLNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAISH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPS TLPSFHAFKD GDMSINSQLM WLQGGVGDQG LQSLNFQGFG VAPWMQPRLD TSSIPGVQPD LYQAMVTAAL QDMRTVDSSK IGSQSLLQCQ QNQSTSTGSP ALVQRQMLQQ SQTQNGFLPS FQENQTASQV QLLQQLQCPN LYNDQRQKQQ QRQSQETQQL PPVPQQISDV IPAFPSVSAN QAQSSLPAVD SQCQQSTFSD HLGNSIATSD VSSMQSILGS LSQMGASHLL NLNGSNPILS SSTFLSKPAA IEPRLSSRVA NSVLPQVEQL GTAQSNASEL HNLLPPFPGR EYSAYHNATD PQNNLLFGVS IDSSSLMLHH GMTNPKSIRN ENDSMSLPYA ASNFTSASGT DFPLNSDMTA SSCVDESGYL QSSENVDQVN PPTGTFVKVH KSGSFGRSLD ISKFGSYDEL RCELARLFGL ERQLEDPQRS GWQLVFVDRE NDILLLGDDP WQEFVNNVWY IKILSPLEVQ QMGKGQNPAT SIPNQRLNAT TTATTSSSNG NHCGDYMSRQ DLRSSVASMG SLEY // ID A0A0D2Q216_GOSRA Unreviewed; 410 AA. AC A0A0D2Q216; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB52417.1}; GN ORFNames=B456_008G261100 {ECO:0000313|EMBL:KJB52417.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB52417.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB52417.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB52417.1; -; Genomic_DNA. DR RefSeq; XP_012439872.1; XM_012584418.1. DR RefSeq; XP_012439873.1; XM_012584419.1. DR GeneID; 105765371; -. DR KEGG; gra:105765371; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 45666 MW; DE5CFF326CAA55FF CRC64; MDFESKEEQM GSKGKLPFSH SSSSSNSSSS QYKTQLGPFG INNTRWEPHH QQMSPNWLGN RYEPEEDKEA TTTTTTVPAV ATASEGNSTR VDSDSTLELR SSASGNIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR GVGELGKDRL FIDWRRRPDA PDPQVSFLHH HFPLHRSIPW NPLLMRPPPT GRDHLHLSQI NPLSRNTYYG GGSNLVNPGG TMGSVFYLRS AVVSTAPQMG MGMMEWQQHG GVVKPVAFDS VPVVQGQAAA KRLRLFGVNM DCPISESDEY DVISTTTIAN ATMAASQTRP SSTSSQHPLQ LRLYNGTPLP PTDFLNPNKG KASMSLDLDI // ID A0A0D2Q5I0_GOSRA Unreviewed; 427 AA. AC A0A0D2Q5I0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB14544.1}; DE Flags: Fragment; GN ORFNames=B456_002G130300 {ECO:0000313|EMBL:KJB14544.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB14544.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB14544.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB14544.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 302 400 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 302 400 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KJB14544.1}. SQ SEQUENCE 427 AA; 48869 MW; F075394103FED9BD CRC64; RLLPYGSSTQ AQSQSQLHQL HPSLCSLWLK QMEDTCKDCR DWEEEIFWTH FQSVHFTQFL HGDFLQRLEI PEKFAKNIKK KLPETVTLKG PSGIIWDVRL TVDDDDTLFF NGGWKTFVKD HSLVANDFLI FKYNGVSHFD VLMFDGKSLC EKASSYFVRK CMHTESDATR QTKRKVNENS DEILHNSSQC GLESGPEKST NNDMDARPSR KPIKSAASKK IRNSDNGTQS IHAKQSLVGK ELPTFPGEVK VERLETEYEH TTMDGDGDVF GLWHTTGKRF VTQFEKTNVI LKAQEALTNE GFMIIMKPTH VGRRFYMAVP TAWVAKYLPK DNADVILRMN KRTWKTRFYY HRSRDCGGLS GGWRNFVNDN NLEEHDVCVF QPANIGRKPM ILDVNIFHVL QKAVPLSQAD PLPSSPELIA STPDMDS // ID A0A0D2Q633_GOSRA Unreviewed; 347 AA. AC A0A0D2Q633; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB12216.1}; GN ORFNames=B456_002G006500 {ECO:0000313|EMBL:KJB12216.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB12216.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB12216.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB12216.1; -; Genomic_DNA. DR RefSeq; XP_012450177.1; XM_012594723.1. DR GeneID; 105773078; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 39882 MW; 2E7DCE2CE0F1D6DA CRC64; MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF KDELSVAAAL TVPDGHVWRV GIRKGDNKVW FQEGWPEFLD RYYIRIGYFL IFRYEGNSAF SVSIFNLYNS EINYQSNALL GSQYNHGKSY PFDELEDDEC MSSAMQHLFG GSKLNHCVNW SGEVNLNAAK SANNQPIRGS ETPPPKKPGR KKQKFDPNDQ DLSVGHEDDS EMRYRFYESA SARKRTVTAE ERERAMNAAK AFEPSNPFCR VVLRPSYLYR GCIMYLPSCF AEHLSGVSGF IKLQLPDGKQ WSVRCLYRGG KAKFSQGWYE FTVENNLGEG DVCVFELLRS REFVLKVTVF RVMDGAGLMH RSQYNAN // ID A0A0D2Q646_GOSRA Unreviewed; 410 AA. AC A0A0D2Q646; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB12231.1}; GN ORFNames=B456_002G007600 {ECO:0000313|EMBL:KJB12231.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB12231.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB12231.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB12231.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 154 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 154 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 352 393 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 410 AA; 46786 MW; DE328D4C60A47094 CRC64; MAVSPKQRIS SLKIVSYEKE KAQCNKRKRA TYDEVYENGQ TKLAVMERAL DIQANLSSEF PSMIKYMLPS HVTGGFWLGL PKHFCLNHLP KEDRMMVLED EEGKEFQVKY LVEKIGLSGG WRGFSIAHKL LEGDVCVFHL VRPSKFKVYI VRKKCSDEVD VALGLLKLES STQLVDNGKE LKICEISVGK TEDRNAPILY SSNIERTVDQ SKNNRVDLGS EVSDGVRLSD SIVNFREVKS FEDFNILVNG LVIDSEFSKY LQMKYYELCC NQNSFLHENL LEGLNCKLVA GVIAETINIA DAIRAAKLTT PHDSFLTWDK TLRSFEGLGM KVGFLRARLD KLMNLLTKSR RYKEVKLEQA NSNEEKLKLE AKLAEVTHTL TKLDREIRLF KQEKADDLEA LFREVANGPW // ID A0A0D2Q8C9_GOSRA Unreviewed; 664 AA. AC A0A0D2Q8C9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G120400 {ECO:0000313|EMBL:KJB35563.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB35563.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB35563.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB35563.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 74518 MW; 0E98941F8A6479CE CRC64; MEIDLNHALS EVEKTAVCNG GCDKLNCVCS SSSSNLASPP CTSSIYLELW HACAGPLTSL PKKGNLVVYF PQGHLEQLAS ASPFSPLEIS TFDLPPHIFC KVVNVQLLAN KENDEVYTQL TLLPQPELRE PNLESKQLDE LGVDEGDDGS PKRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQTRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLVAG DAVLFLRGED GELRLGIRRA VRPRNCLPES VIAKQNSYLN VLSPVANALS MKSMFHVFYS PRASHAEFVI PFRKYFKSIA NSVCIGTRFK MRFDMDDSPE RRFSGVVMGM GDSDPYKWPN SRWRCLMVRW DEDNMIDRHE RVSPWEIDPS ASLPPFSIQS SPRLKKLRTG GSRFLDFEEP LRSSKVLQGQ ENVGFVSPLY GRDTVSRPLD FEMQSPAHHQ SLASTGIEKS NISEFMRVRS TTYTGFADSN RFPKVLQGQE ICQLRSLTQK ADLNPGVWAK TNLGCNSFNM HQTLRTNCYP LASEGLRNMY FPYGEFLKTV QEPTMSSYAC PLRRGNVPFN ASSIRTGVGV IVDGFRKPNQ QNEHKPLENI PSPASENNLR NQQDDSFKRN VAGCKLFGFP LNVESPTPNS QNSGKRSCTK VSLS // ID A0A0D2Q8Q5_GOSRA Unreviewed; 1078 AA. AC A0A0D2Q8Q5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G037100 {ECO:0000313|EMBL:KJB54512.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB54512.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB54512.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB54512.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 951 1044 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1078 AA; 120443 MW; 4074A48309D5A233 CRC64; MKAPPTGFLA NPAEGDRKSI NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICVLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKHSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHENAWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDVKSQL LLGLRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANFS PFTIFYNPRA SPSEFVVPLA KYYKAMYTQV SLGMRFRMMF ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPRRVS IWEIEPVVSP FFICPPPFFR PRFPKQPGMP DDDSDVENAF KRAMPWLGDD FAAQSGFFPS TVSSNPLHNN LSIDDPSKLL NFQAPVLPAP NMQFNKANPN QVNQLPQAPT TWPQQILQTP LNQHQQQQPQ QQLQQQQPQQ PKQQPQPQSH LLHQQQPQPQ PSPKQQQHIH QEQRQQPQQQ QPLQQQPTLP PQVINGIVAP NQISNQNLHQ PAVYSHLQQQ QLLTSNSLST QTTLSAHMTS YPLTSLPQDT RVQQQMEQQP NLMQRQQQQT QLQQSLSQRT QQQPQILQLS QQGLSEQLQL QLLQKLQQQQ QQQSAQQLLS AAGSLLQPPM LQQQQTHQQN QPLQQLPLSQ SQVQPLGGNG FSTSMFVQPQ QLSVHQSQSQ NKQLMAMRSN SGLIDGDAPP CSTLSSTNNC QVSPSNLINR SHHVPSILMT DPVVEPPSTL AQELLSKPDI QIKHEPPTSR GLDQSKYKSS VTDQLEASSS GTSYCLDAGT LQHNASLAFL EGDVQSHSRN NLPFTANIDG LAPETLLTRE YDSQKDLQNM LSNYGGNPRD IDTELSTAAI SCQSFGVPNI PFKTGCSNDV AINETGVLNG GLWTNQTQRM RTYTKVQKRG SVGRSIDVTR YKGYDELRHD LARMFGIEGQ LEDPQSSDWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSSAEVQQMS LDGNLGNVSV PNQACSGTEN GNAWRGHYDD TSAVSFNR // ID A0A0D2QBG0_GOSRA Unreviewed; 708 AA. AC A0A0D2QBG0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G166400 {ECO:0000313|EMBL:KJB36593.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB36593.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB36593.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB36593.1; -; Genomic_DNA. DR EMBL; CM001745; KJB36595.1; -; Genomic_DNA. DR RefSeq; XP_012485958.1; XM_012630504.1. DR RefSeq; XP_012485960.1; XM_012630506.1. DR GeneID; 105799779; -. DR KEGG; gra:105799779; -. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 78016 MW; 2340B2660AF21DD4 CRC64; MITFMESKEK PKEMEKCLDS QLWHACAGGM VQMPSVNTKV FYFPQGHSEH ACGTVDFRNC PRIQAYILCR VAAVKFMADP ETDEVFAKIR LIPVNTNDPD FEDDGIGSIN GNETQEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCIGIR RAKRGIGGGP ESSTGWNATA GNCMIPYGGF SAFLREDEGK LMRNGSSNGV SSNGNLMGKR KVRTEQVIEA ATLASNGQQF EVVYYPRAST PEFCVKASLV KAALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD PLHWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHS DFHLDGQLPM PTFSGNLLGA SNPFGCLPNT APAGMQGARH AHYGLSLSDL HLNKLQSGLF PASFPPLDYA PVPNRTSNGG PNIRKPSMSE NVSCVLTMSH PSQNTKKADG AKTPQLVLFG RPILTEQQIS LSCSGDTISP VLTGNSSSEY LDKAANFSDG SGSALHQQGL PERASCEGLP WYKNSRQETE PNLETGHCKV FMESEDVGRT LDLSLLGSYD ELQRKLADMF GIENSETLSH LLYRDATGAV KQIGEEPFSD FMKTARRLTI LTDSSSDNVG EYRGRSKP // ID A0A0D2QBH9_GOSRA Unreviewed; 737 AA. AC A0A0D2QBH9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G078800 {ECO:0000313|EMBL:KJB55492.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB55492.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB55492.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB55492.1; -; Genomic_DNA. DR RefSeq; XP_012443347.1; XM_012587893.1. DR GeneID; 105768136; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 602 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 173 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 737 AA; 81678 MW; D7E4D42AEB5D5121 CRC64; MEIDLNHAVN EVEKTVLCNG SCEKASACVY CLSSSSSSSS SSSSSSSCSS NSGSPPCSSS IDLELWHACA GPLTSLPKKG NVVVYFPQGH LEQLALAFPF SPLDTFDLPP QIFCKVMNVQ LLANKENDEV YTQVTLLPQP ELGGHNLGSK QLDEVGADEH ADGSPSKPTS HMFCKTLTAS DTSIHGGFSA PRRAAEDCFP RLDYKQTRPS QELVAKDLHG VEWRFRHIFR GQPRRHLLTT GWSVFVSQKN LIAGDAVLFL RGEDGELRLG IRRAVRPRTG LPDSVIAKHN SYPKVLSAVS NALSTKRVFQ VCYCPRASHA EFVIPFQKYI KSITNPMCTG ARFRMKFEMD DLPERRCNGV VTGIGDSDPY KWPNSKWRCV MVRWDDDIAS DHQERVSPWE IDPPVFPPPL SIPSPFRLKK LRTGLQTAAL DTPITGFAET NRFPKVLQGQ EICSLRSLTH KADLNLGVWA KTNHGCNSFN MNQAPNTNCY PEGLRNMYFP YNEFYKAGQE PKMFSYASKL PRGNVLFNAS SIKPGVSVDD IRKPNPPNDH KPMENIPSPG FGKKLRNQQN ECYKGNVAGC KLFGFSLTAE SPTLNSQNSG KRSCTKVHKQ GSLVGRAIDL SRLYGYKDLM TELEHLFGME GLLNDPDKGW RVLYTDRDND VMVVGDDPWH EFCDVVSKIH IYTGEEVEKM TVGMGSDETQ SCLEEAAVIM EASKSSSVGQ PDSSPTVMRG MKISVCF // ID A0A0D2QCC6_GOSRA Unreviewed; 225 AA. AC A0A0D2QCC6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB14566.1}; GN ORFNames=B456_002G131600 {ECO:0000313|EMBL:KJB14566.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB14566.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB14566.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB14566.1; -; Genomic_DNA. DR RefSeq; XP_012466565.1; XM_012611111.1. DR GeneID; 105785170; -. DR KEGG; gra:105785170; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 25798 MW; 0112ECC75E2C4AF9 CRC64; MVVAKEKMMS YEEIRQKRVE ENKKRMEALN LPQLSTLLHT PSFKPSPRKQ MKLRTVEKQL VVVRRSSRVA NKPAPVYQEV LVDKVMIPRR VSKHRDLSNR VYASDEARAE ALEKAEKLES GLDPHFPVFI KSMLQSHVTG GFWLGLPVHF CKTNLPKRDE VMTLVDEEGH EYPTIYLAKK TGLSGGWKGF AVAHRLVDGD AIVFQLLQRT TFKVYIIRVK GSEQS // ID A0A0D2QEG1_GOSRA Unreviewed; 331 AA. AC A0A0D2QEG1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17834.1}; GN ORFNames=B456_003G020700 {ECO:0000313|EMBL:KJB17834.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17834.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17834.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17834.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 331 AA; 37756 MW; 9BE24CB35281707B CRC64; MTRKPKRNPS FFKILIGNFD KKQRIPPAFV KYIFKGNVPT MLTLYSDSGN SWRVRIKVEQ GSYFFNNGWS KFVKYRDLEI GDFLVFFLVD SSTFDVFIYN RTACAKIIIL AAKKQKGRSP RVSRQIEQTP SHKCTSTSKK PRTVPRAQEV EFVSGVTPKS VSYVMVVKGY NKYYAGIPRC FTEEAGLGKV SMVMIKGPSG MWPMMTTFSS KQVLLSVGWS KFLHENEIVI GDTLLFEYVP NTGHLIHVQV VNKDGTGNCG SLAGKRPRDR PREQTELPPS TKYASSYKRT KELILEQASF VVVLKKYHQY SVSVPASFLP KKQAWQRNRA R // ID A0A0D2QEJ1_GOSRA Unreviewed; 246 AA. AC A0A0D2QEJ1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17864.1}; GN ORFNames=B456_003G020100 {ECO:0000313|EMBL:KJB17864.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17864.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17864.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17864.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 141 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 27521 MW; AC1DC5D7DF6D59A8 CRC64; MPCNFVKENL MKKHCSVILC NSSGKTWIAT FKQRKIGKKL TSYLIAGCGT FARDNNIQVG DVCASELINS IHISFKVVIY QGQHANCHQS LAVTDVFHLV KRKAPSCAPS YASQGCPEPL TALEKAKAFQ TAGAFKSENP FFVIVLQPSH VHGNKLSVPM NFARKYLTMM HKKVIHLLSD GNSWPVIYDP RFEWSYVFLC NGWHRFAVDN NLEVGDVCVF ELTGGIETSM KVTIYKKQAI EDENLG // ID A0A0D2QEJ4_GOSRA Unreviewed; 437 AA. AC A0A0D2QEJ4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17869.1}; GN ORFNames=B456_003G020600 {ECO:0000313|EMBL:KJB17869.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17869.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17869.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17869.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 332 427 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 332 427 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 437 AA; 49599 MW; 1239EAD298D73C48 CRC64; MTRKPKRSPS FFKILVGDFV TKLKIPPAFL KYVLKGKVPT MFSLYSDSGN SWRVRVEVQQ GSYFFNSGWS KFVKYHGLEI GDFLVFFLVD SSTFDVFIYN RTACAKNIIL AAKKPKGRPP GGNRQIEQTP SQKCTSASKK PRAVSRARNV SQEVEFIKEE TPKHVSFVLV VKKYLKYYVF IPRYFAKETG LGKESITIIK GPRGGMWPMN TTESGRQVRL GGGWSQFLHE NDIVVGDTLL FQHIPNASNL VHVQILNKAG YRNHGRGGRR GRQNKQANAS EKNTIIAIKQ KRGPPCRQIE EPNSKITKGL SIGGERDITR KDEFESELTP KKASFVVVLK QYQKFYIPVP TSVAKEMGLT KEPSTVIKDS KGRKWRLNIL VYARSVHLGA GWSKFMEENK LEVGDTLLFQ HIPNTGNVIY FHIIRKARDG NHGKRKN // ID A0A0D2QEL4_GOSRA Unreviewed; 117 AA. AC A0A0D2QEL4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17894.1}; GN ORFNames=B456_003G022700 {ECO:0000313|EMBL:KJB17894.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17894.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17894.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17894.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13500 MW; 8B15B68B7F62616C CRC64; MALQFVKILS KTDTEKRLSL PTKYMKHLPR IRRGHAVNLT VMDEQGRQWH FGYTIRRNGH PKPVLSAGWH DFVKGKYLKP GDQIIFKLEA NDAAALYTIG VKRRIRLLGT EVWTAVC // ID A0A0D2QGQ0_GOSRA Unreviewed; 914 AA. AC A0A0D2QGQ0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G152700 {ECO:0000313|EMBL:KJB57192.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57192.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57192.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57192.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 771 855 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 914 AA; 100946 MW; 7320F22DB877F10E CRC64; MRLSSAGFSP QAPEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE EVDVHVPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLNPQEQKE AYLPAELGTS SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHLGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LTKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGDRQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPA GLPSFHGIKD DGLGMNSPLM WLQGDAGRGM PSLNFPGIGV TPWMQPRLDA ASMLGLQTDI HQAMAAAALQ DMRAVDPSKS ATTTLLQFQQ PQNLSCRPAA LMQSQMLQQS QPQAFLQGVE DNQHQSQTQA QTQPPLVQQQ LQQQNSFNNH QHQQQLQHPL SQQHQQLVDH QHISTGVSAM SQYTPASQSR SSPFQAIPSL CQQQSFSDSN GHTMTSPIVS PLHGLLGSFP QDESSGLLNL PRSNPVITSA AWPSKRAAVE VLSSGSPQCV LPQVEQLGPT QTNISHNSIS LPPFPGRECS IDQAGGTDPQ SHLLFGVNIE PSSLLLQNGM SSLRGVGSES DSTTIPFSSN YASTAGTDFS VNPAMTPSSC IEELGFLQSP ENVGQENPQT RTFVKVYKSG SFGRSLDISK FSSYNELRSE LARMFGLEGQ LEDPLRSGWQ LVFVDRENDV LLLGDDPWPE FVNSVWCIKI LSPQEVQQMG KRGLELLNSV PVQRLLNGSC DDYASQQDSR NLSSGGKELP NGKELPNSSW NFII // ID A0A0D2QH39_GOSRA Unreviewed; 689 AA. AC A0A0D2QH39; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G078000 {ECO:0000313|EMBL:KJB18969.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB18969.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB18969.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB18969.1; -; Genomic_DNA. DR RefSeq; XP_012470431.1; XM_012614977.1. DR GeneID; 105788203; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 576 657 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 689 AA; 77106 MW; EB7A2D18EBDC6F54 CRC64; MANRGGVFSQ TNNVSSEGNG GDDLYMELWK LCAGPLVEAP RARERVYYFP QGHMEQLEAS TNQELNQRIP LFNLPSKILC SVVHIQFLAE QETDEVYAQI TLMPEPNQPE PTTPDACPPE PPKPTVCSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM NQATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGES GELRVGVRRV ARQQSSMPTS VISSQSMHLG VLATASHAVS TQTLFVVYYK PRTSQFIIGL NKYLEALNNK FTVGMRFKMR FEGEDSPERR FSGTIVGVED FSPYWKDSKW RSLKVQWDEP ASIPRPDRVS PWEIEPFAAP IPPTLGQPVA AKNKRPRPTA EIPALASAPW NSGVMHTHDL MRRNITAEAN RNENHVIWHM QTEMSSSCSS VLKTQNEGSW LSSPCMSVSK HRFPDARDDS KCASGWPVLS GLSNPQVNND STFDPIEKVK KSETASSCRL FGIELINHSA SSRQLERTPT QLSTMTASTA EGHHTLSPNN SCQKSEISKD SNEKQEQLQL QAKEIQSRQS CPSSTRSRTK VQMQGVAVGR AVDLAMLEGY DQLIDELEEM FDIKGELRPR NKWEIVYTDD EGDMMLVGDD PWQEFCSMVR RIFICLSQDV KKLSTGSKLP MACIEGGEGT VISSESIEN // ID A0A0D2QHI5_GOSRA Unreviewed; 708 AA. AC A0A0D2QHI5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G166100 {ECO:0000313|EMBL:KJB57482.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57482.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57482.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57482.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 77103 MW; 96A8002337BD79BF CRC64; MGGLIDLNTT EDEETPSSGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR GSVVVYFPQG HLQQVSDFSG VAPAHDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE KLKEGNIEVD GEEDAEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGENGE LRLGIRRAAH IKNGTSFHSL CTQQLNRSNF ADVVHAISMK SVFSIYYNPR YTGVVTGISE MDPVRWSGSK WRCLLVRWDD IDANRHNRVS PWEIEPSSSI SSSNSLLSPG SKRNRVGLPS GKPEFMVPEG IGASDFGESL RFQKVLQGQE ILGFNTHHDG ANSQIMHRSE ISRRFPCSNG SGIAAIRNIG RDTLVNPDIS YKGVGFEESF RFQKVLQGQE TSVSPPCRRG PTADDTRESD SPGAPDVGQL SGTRSGWSSL MQSYNTHSHI GPSAQVSSPS SVLKFQHASN PFANVNPIHN LNSQEKERRV HKSSSFHAPE TYGDRIPSST GGHGSRRRHL GSLDSFGPSA DTVQLGDSQP LSAQPTFRTS QELASSCKSS CRLFGFSLTE GGHDAAKEDN MVQATSSLGA GAFLPRIGEQ FNTQPPAVTN TVGSSYTKGI LQHCLKNYDE DATNDDRARR CMHAYSLL // ID A0A0D2QI58_GOSRA Unreviewed; 284 AA. AC A0A0D2QI58; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB16586.1}; GN ORFNames=B456_002G237900 {ECO:0000313|EMBL:KJB16586.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB16586.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB16586.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB16586.1; -; Genomic_DNA. DR RefSeq; XP_012468154.1; XM_012612700.1. DR GeneID; 105786322; -. DR KEGG; gra:105786322; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 31726 MW; BBCC1BE320261242 CRC64; MEPTQSYQPS MSFFSNIPSS HIEDEYEQFD DHEKEPMFEK PLTPSDVGKL NRLVIPKQHA EKHFPLGGSG GDSVVDNKGL LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKEKQL DAGDIILFKR HRLNAERLFI GWRRRGAALD GGNAELGNNS GGVRGGDNGG WSSSRGLYQG NPYPGHIQGQ CHGANVPYQH DCLHAGSMAE NQGPGGNPKR LLRLFGVNLE CHLDDSSEPS TPDSSSVSSQ GPTSTHHFYS QSYTSNYMDI GFSRDMNQMN NHRA // ID A0A0D2QJA2_GOSRA Unreviewed; 1127 AA. AC A0A0D2QJA2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G017000 {ECO:0000313|EMBL:KJB07335.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB07335.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB07335.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB07335.1; -; Genomic_DNA. DR RefSeq; XP_012482674.1; XM_012627220.1. DR GeneID; 105797241; -. DR KEGG; gra:105797241; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1000 1093 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1127 AA; 125960 MW; E71E09DB4B27DE7D CRC64; MKAPPNGFLA NPAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFVPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYDREALL ASDMGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELAARD LHENTWTFRH IYRGQPKRHL LTTGWSVFVS NKRLFAGDSV LFIRDEKSQF LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEECGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP FYICPPPFFR PRFPKQPGMP DNDNDVENAF KRAMPWLGDD FGMKDSPNSI FPGLSLVQWM NMQQNNQLAA AQSGLFPSMV SSNPLHNSLG TDDPSKLLNF QAPVLPASNM QFNKANPNQV NQLSHAPMTW PQQQQLQQLL QTPLNQNPLQ QQSQQQLQQR QSQLQPQSHL QQQPQPPLQQ QQQQQQQQRQ QAQPQPQQQQ PPLQQLQQQQ RQQAQPQLLQ QQFLPAQVNN GIIASNQMPN RNLHQPGVYS QVQQQQQQQQ ILTSNGQSTQ TTLPANKASY PLTSLAQDTQ IQQQVEQQPN LVQSQQQQTQ LQQNLSQRSQ QQPQIQQLAQ QGLPEQQFQL LQKLQQQQQQ QQSSQQLLSP TGSLSQSPVV QQQPMHQQNQ PMQQVPLSQS QQTLGSNGFS TSMLMQPQQL VVSQSQNQNK PLMAMRTHSG LTDGDAPSCS TSPSTNNCQV SPSSFLSRSQ QVPSMVVTDP VVEPASTLVQ ELQSKPDIRI KHELLASKGP DQSKYKSTVT DQLEASSSGT SYCLDAGTIQ HNFSLPTFLE GDVQSHPRNN LPFSANIDGL APDTLLSRGY DSQKDLQNLL SNYGSNPRDI DTELSTAAIS PQSFGVPNIP FKTGCSNDVA INDAGVLNGG LWANQTQRMR TYTKVQKRGS VGRSIDVTRY KGYDELRHDL ARMFGIEGQM EDPQSSDWKL VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SSLEVQQMSL DGDLGNVPVP NQACSEIDSG NAWRGHYDDT SAASFNR // ID A0A0D2QJW5_GOSRA Unreviewed; 310 AA. AC A0A0D2QJW5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58377.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58377.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58377.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58377.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58377.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 35480 MW; 14E9324E3E16BCE4 CRC64; MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL RINKRTWRTS // ID A0A0D2QKM0_GOSRA Unreviewed; 716 AA. AC A0A0D2QKM0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G142500 {ECO:0000313|EMBL:KJB20299.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB20299.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB20299.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB20299.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 652 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 108 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 79161 MW; C0DC3D5FF7B35DEE CRC64; MKESDKSLDP QLWHACAGPM VQIPPLNSKV FYFPQGHAEH SLAAVDFPSS PPVPALVLCR VASLKFMADT ETDEVYAKIL LMPLPNTELD LEHVAVFGSD NAEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPPLDYT EDPPVQTVVA VDVHGETWKF RHIYRGTPRR HLLTTGWSTF VNHKKLVAGD SIVFLRSENG GLCVGIRRAK RGTGNGPEAG SPFLSFLRED ESKMMMMNRN GDWRGKGKLK AEAVLQAATL AASGQPFEVV YYPRASTPEF CVKASSVKAA MRVPWCCGMR FKMAFETEDS SRISWFMGTV SSVQVVDPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNVPAVH LSPFSPPRKK SRFPQHLDFP LDGQFPMSAF SSNGNPHGTG CPLVLSDNAP AGIQGARHAQ FGLSLSDLHL NNKLQSGLFL PGFQRFDPHS RISDGIMMAR RPNGTDNLSC LLTIGNSNVN EKSGNTKRHQ FLLFGQPILT EQQLSRSCSS EVVSQVINGN SSLDGSAEKT KDTSDGSRSS LEKSSTAGFL WHQDYRSTET GLDIGHCKVF LDSEDVGRTL DLSVLGSYEE LYRRLANMFG IERSKMLGHV LYRDATGAVK QTGEEPFRYQ FKKPIHLFCS FDLALGLYLH NLPMLYCSAF MKTAKRLTIR MDSSNETVAR SWLTGIRTAE NGLGGPSKRG PLSIFA // ID A0A0D2QL88_GOSRA Unreviewed; 865 AA. AC A0A0D2QL88; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB20514.1}; GN ORFNames=B456_003G152700 {ECO:0000313|EMBL:KJB20514.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB20514.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB20514.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB20514.1; -; Genomic_DNA. DR RefSeq; XP_012471733.1; XM_012616279.1. DR GeneID; 105789065; -. DR KEGG; gra:105789065; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 333 434 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 561 611 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 333 434 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 865 AA; 95398 MW; 149470CFEAADC657 CRC64; MGSKICMNSS CGAATSNEWK KGWPLRSGGF AHLCYPCGSA YEDGVYCDTF HLEESGWREC RICGNHLHCG CIASNYLLEL LDYGGVGCIS CAKSSRLHTV KRIQTHGDEI PEGVGAVPMN NAGSSAVEGK AVSDHVDERT LAPLCKSMEA NECNLLPQSQ RGDANASLGQ HRGEEVICPT EKVGAGFSNA TQPYVRPANF AKLDNARSAL DVRDIQDSLP QPYLSMSLGG SSANPNFLLP FSSGLADGKE PSKTWSSFQQ GQQSRRILPK PSKNGLTTSS ELNKGMIPQA RITRPPVEGR GKNHLLPRYW PRITDQELQK LSGDLKSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQSEGLPL RIQDVNGKEW TFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI DPGGKLVMGF RKAANSDTQT PKGGKDLLGN ALSEHFGLPD GNISRSRDED HGVRANENSV HQLAMNAEKK KTRNIGSKSK RLLMHSVDAL ELRLTWEEAQ DLLRPPPSVR PSIVTIEDHE FEEYDEPPVF GKRTIFGAWP SGEQEQWAQC DDCSKWRRLP VDVLLPSKWK CSDNVWDSSR CACSAPEETG PKELENILKV GTDLKKAKVQ ESPKVAPEPE PTGLDALASA AVLGDKMGDV GESSVGATTK HPRHRPGCTC IVCIQPPSGK GKHKANCTCN VCLTVKRRFK TLMLRKKKRQ SEREAEISER DNKKQMDETE LKDTRNDHSE NEGSRSRIEG EVAEASTGEI DLNCHPIRED VQLEGGLNMM SFVEATSLPV ENYIKQNGIE SLKTEQQQQG SLGSHFQSKV NRENERPLSD EEFLASVGWE HVGHKEPCLE RNSLQ // ID A0A0D2QM03_GOSRA Unreviewed; 312 AA. AC A0A0D2QM03; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17846.1}; GN ORFNames=B456_003G020800 {ECO:0000313|EMBL:KJB17846.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17846.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17846.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17846.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 228 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 228 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35771 MW; CF539C0CE254FDD3 CRC64; MAASSHQQGN GHLKYISDSP YFFKIILQDN IQNGKLGIPK KFVKNHGNGM SSPAMFSVPS GEVWKVELTK CDGKIWCENG WLEFSNHYSL YIGHLLVFRY DGNSNFHVII FDRTATEIQY PYTSNYHRQS NVILEQNIDQ SRKPGEESQL PRPRPRPQSH KMVRSTKSAM ETETEAECNG KPDFPARNGD TSTNHNTVRR LNTCEKVKAL ERARNTFKSE NPFFLVVIQP DYVGLSLGKR YRLAIPADFV RENLMKEHCS ITLCHSSGKT WMVTFKQQKG QKLYSFLQTG WVTFVRDNNI QVGDVCAFEA FL // ID A0A0D2QM18_GOSRA Unreviewed; 142 AA. AC A0A0D2QM18; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17866.1}; GN ORFNames=B456_003G020300 {ECO:0000313|EMBL:KJB17866.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17866.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17866.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17866.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 142 AA; 15983 MW; 916935E9D71824AC CRC64; MASSSHQQGN SHLKFISSSP YFLKIILQDT IQNGKLFVKN HGNSMSSPAM LSVPSGAVWK VELTKSDGKI WLENGWLEFS NHYSLDIGHL LVFRYDGNSN FRVIIFDKSA SEIQYPYTSN NHSRSSEILK LNINESKDDG SI // ID A0A0D2QPW1_GOSRA Unreviewed; 691 AA. AC A0A0D2QPW1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G078000 {ECO:0000313|EMBL:KJB18966.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB18966.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB18966.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB18966.1; -; Genomic_DNA. DR RefSeq; XP_012470430.1; XM_012614976.1. DR GeneID; 105788203; -. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 77333 MW; 122EDC8A7FD76090 CRC64; MANRGGVFSQ TNNVSSEVKG NGGDDLYMEL WKLCAGPLVE APRARERVYY FPQGHMEQLE ASTNQELNQR IPLFNLPSKI LCSVVHIQFL AEQETDEVYA QITLMPEPNQ PEPTTPDACP PEPPKPTVCS FCKVLTASDT STHGGFSVLR KHATECLPPL DMNQATPTQE LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ESGELRVGVR RVARQQSSMP TSVISSQSMH LGVLATASHA VSTQTLFVVY YKPRTSQFII GLNKYLEALN NKFTVGMRFK MRFEGEDSPE RRFSGTIVGV EDFSPYWKDS KWRSLKVQWD EPASIPRPDR VSPWEIEPFA APIPPTLGQP VAAKNKRPRP TAEIPALASA PWNSGVMHTH DLMRRNITAE ANRNENHVIW HMQTEMSSSC SSVLKTQNEG SWLSSPCMSV SKHRFPDARD DSKCASGWPV LSGLSNPQVN NDSTFDPIEK VKKSETASSC RLFGIELINH SASSRQLERT PTQLSTMTAS TAEGHHTLSP NNSCQKSEIS KDSNEKQEQL QLQAKEIQSR QSCPSSTRSR TKVQMQGVAV GRAVDLAMLE GYDQLIDELE EMFDIKGELR PRNKWEIVYT DDEGDMMLVG DDPWQEFCSM VRRIFICLSQ DVKKLSTGSK LPMACIEGGE GTVISSESIE N // ID A0A0D2QPW5_GOSRA Unreviewed; 623 AA. AC A0A0D2QPW5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G078000 {ECO:0000313|EMBL:KJB18971.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB18971.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB18971.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB18971.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 623 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 104 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 623 AA; 70085 MW; 8FD472E5E8CBE561 CRC64; MELWKLCAGP LVEAPRARER VYYFPQGHME QLEASTNQEL NQRIPLFNLP SKILCSVVHI QFLAEQETDE VYAQITLMPE PNQPEPTTPD ACPPEPPKPT VCSFCKVLTA SDTSTHGGFS VLRKHATECL PPLDMNQATP TQELVAKDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF LRGESGELRV GVRRVARQQS SMPTSVISSQ SMHLGVLATA SHAVSTQTLF VVYYKPRTSQ FIIGLNKYLE ALNNKFTVGM RFKMRFEGED SPERRFSGTI VGVEDFSPYW KDSKWRSLKV QWDEPASIPR PDRVSPWEIE PFAAPIPPTL GQPVAAKNKR PRPTAEIPAL ELPSTASAPW NSGVMHTHDL MRRNITAEAN RNENHVIWHM QTEMSSSCSS VLKTQNEGSW LSSPCMSVSK HRFPDARDDS KCASGWPVLS GLSNPQVNND STFDPIEKVK KSETASSCRL FGIELINHSA SSRQLERTPT QLSTMTASTA EGHHTLSPNN SCQKSEISKD SNEKQEQLQL QAKEIQSRQS CPSSTRSRTK VQMQGVAVGR AVDLAMLEGY DQLIDELEEM FDIKGELRPR NKWEIVYTDD EGDMMLVGDD PWQ // ID A0A0D2QQN4_GOSRA Unreviewed; 691 AA. AC A0A0D2QQN4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41543.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41543.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41543.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41543.1; -; Genomic_DNA. DR RefSeq; XP_012490132.1; XM_012634678.1. DR GeneID; 105802809; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 577 669 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 77127 MW; 1599B7F9366A4D6F CRC64; MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE APKRKVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSTMPSS VISSQSMHLG VLATAAHAVT THTLFVVYYK PRTSQFIIGV NKYLEAINNG FSVGMRFKMR FEGEDSPERR FTGTIVGVGD ISPHWSESKW RSLKIQWDEP AAIQRPERVS PWEIEPFVAS ASTNAQPTIM CKRPRPVDIP ASEITTSSAG SAFWCRESIQ SHELTPVGST LEVQSSENQV MWPMRQKEAD NCLINGNGGY KSRTPPENAW PPSPLVNVSL NLFPDSMENN YKTGALQTAL TGYAKGLMHD QVEKRKTETF TGCRLFGFNL TDSTSVAAPP DKEQTSTSID YNGVRGHVPA AFHVEQKPET SKEQKQVASE TSTQEMQAKQ GSATSMRSRT KVHMQGIAVG RAIDLTALKG YNDLINELEK MFEIKGELCR SGQWSIVFTD DEGDMMLVGD DPWVEFCKMV RKIFIYSSEE VKKISTRCKF PASSMECEGT VVSLDSEHRS V // ID A0A0D2QQN7_GOSRA Unreviewed; 599 AA. AC A0A0D2QQN7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41548.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41548.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41548.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41548.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 599 AA; 66656 MW; 03F0EF3397619280 CRC64; MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE APKRKVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR FKHIFRGRQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGVRR LARQQSTMPS SVISSQSMHL GVLATAAHAV TTHTLFVVYY KPRTSQFIIG VNKYLEAINN GFSVGMRFKM RFEGEDSPER RFTGTIVGVG DISPHWSESK WRSLKIQWDE PAAIQRPERV SPWEIEPFVA SASTNAQPTI MCKRPRPVDI PASEITTSSA GSAFWCRESI QSHELTPVGS TLEVQSSENQ VMWPMRQKEA DNCLINGNGG YKSRTPPENA WPPSPLVNVS LNLFPDSMEN NYKTGALQTA LTGYAKGLMH DQVEKRKTET FTGCRLFGFN LTDSTSVAAP PDKEQTSTSI DYNGVRGHVP AAFHVEQKPE TSKEQKQVAS ETSTQEMQAK QGSATSMRSR TKVNFTVSAS LDCIHYSSS // ID A0A0D2QR00_GOSRA Unreviewed; 693 AA. AC A0A0D2QR00; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_001G153900 {ECO:0000313|EMBL:KJB09635.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB09635.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB09635.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB09635.1; -; Genomic_DNA. DR EMBL; CM001740; KJB09640.1; -; Genomic_DNA. DR EMBL; CM001740; KJB09641.1; -; Genomic_DNA. DR RefSeq; XP_012480938.1; XM_012625484.1. DR RefSeq; XP_012480942.1; XM_012625488.1. DR RefSeq; XP_012480944.1; XM_012625490.1. DR GeneID; 105795828; -. DR KEGG; gra:105795828; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 670 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 693 AA; 76968 MW; 048FEE0E746BD97F CRC64; MANVQVNPRG SSIAHSESGS SDDDLYAELW KLCAGPLVEI PRNHERVFYF PQGHMEQLEA STNQELNNQA PLFNLPSKIL CRVIHVQLLA ELETDDVYAQ ITLQPEADQS EPTSPDPCPA EAPKRTVNSF CKILTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL AAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGARR LARQQTTMPS SVISSQSMHL GVLATAAHAV TTQTLFVVYY KPRTSQFIIG VNKYLEAIKN GFSVGMRFKM RFEGEDTPDR RFTGTIVGVG DFSPHWSESK WRTLKIQWDE PATIQRPERV SPWEIEPFAP SASINLVQPA VKNKRPRPVD IPVSEITTNS AGSTFWGRGS TQSHELTQVG STPEIQSSES QVMWGMRQKE ADYSRGYNSN AWPHSPLVNV SLNLFPNSVS DKNRTEKPQT TLTGYALPSL SRPSKGLMHD QVEKGKKSET STGCRLFGFN LTDTISAVIP TDKEQTNTTV DHNGVWGSLA AASHIDQNPE TAKQKHVAAE ASSKEMQAKQ GASTTSTRSR TKVQMQGIAV GRAVDLTVLK GYDDLINEVE KMFDIKGELR PSGKWSVVFT DDEGDMMLVG DDPWMDFCKM VRKIFIYSSE EVKKISPRCK FAVSSLEGEG TAVTIDSEHK SET // ID A0A0D2QSB5_GOSRA Unreviewed; 764 AA. AC A0A0D2QSB5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB10105.1}; GN ORFNames=B456_001G184300 {ECO:0000313|EMBL:KJB10105.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB10105.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB10105.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB10105.1; -; Genomic_DNA. DR RefSeq; XP_012484522.1; XM_012629068.1. DR GeneID; 105798851; -. DR KEGG; gra:105798851; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 620 724 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 620 724 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 764 AA; 85368 MW; 7235CE15613F2EA4 CRC64; MRGVQQQQQQ QKMGGEDVHA VGGNEGNPSG FDDVVVEVER VMGSEEREMW LDRQQDDELL DVNDASIFYG DFPPLPDFPC MSSSSSSSST PAPVKAVACS SSASTASSSS SAASWAVLKS DADEDMERKS NGHHIHLHHH HHQNYIQNSH QQEHHGKVDG TPAALSSTAS MEIPQPPDQN VMDGVDCMDV MENFGYMDLI DNNDLFDPSS IFHHDDTGLE EFQQDQQNQQ QQEHDSTQQQ LGKQVGAMMY SKNEDQTQEE KASDDLAMVF LEWLKTNKET VSAEDLRRVK IKKATIECAA RRLGGGKEAM KQLLKLILEW VQTNHLQRRR IKESASNNHP DHPCQYSNPN NLNPSSNPNL NCNPILPSEP NSFFSQPAWV PQPAYTTDPG AAPPPLPGFT PVVGYMGDPF ANGAPNVTTH HHPYRPPTDY QVLDTAQTWP PSQFALAASQ YNSFADNNLH PAPLQQQPSA FPGYVNQYPY QYVPGHNNND QRLLRLGSSA TKEARKKRMA RQRRFASHHR NHGHHHNNQQ SQLQNQSIDQ HERIVNGNCV AAAQANPGNW VYWPSVAGAL ASNPPSVLPG DVTMVHPVDQ TTMQGQTYQR QVATDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISIAME DIGTSRVWNM RYSFRFWPNN KSRMYLLENT GDFVRTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQSGTKS ETKRPGKSQK NHHTNSPSAA VSGSLPTPIT QTVK // ID A0A0D2QVR1_GOSRA Unreviewed; 304 AA. AC A0A0D2QVR1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB62052.1}; GN ORFNames=B456_009G399000 {ECO:0000313|EMBL:KJB62052.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB62052.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB62052.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB62052.1; -; Genomic_DNA. DR RefSeq; XP_012441607.1; XM_012586153.1. DR GeneID; 105766627; -. DR KEGG; gra:105766627; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 33764 MW; 61E95E43DCC5727F CRC64; MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PSMFLSSIHA PRHFNLNHDD DEELDDQTST LNTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGDSSDKG LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF IGWRRRGAAV VVAPAATDGG NAMMENDSGG GGGGNGGWNN RGLYQRYPHL GHIQGDLEAN VPYQPDCLHA GSIVQNQATA AGNPKRLVRL FGVNLECHQL DESPPSTPAS SMVSSQGPTA HQFY // ID A0A0D2QWP1_GOSRA Unreviewed; 308 AA. AC A0A0D2QWP1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB11710.1}; GN ORFNames=B456_001G273500 {ECO:0000313|EMBL:KJB11710.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB11710.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB11710.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001740; KJB11708.1; -; Genomic_DNA. DR EMBL; CM001740; KJB11710.1; -; Genomic_DNA. DR RefSeq; XP_012446172.1; XM_012590718.1. DR GeneID; 105769826; -. DR KEGG; gra:105769826; -. DR Proteomes; UP000032304; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34217 MW; 84E08A1C93BB7BAE CRC64; MMAAATAAGA ATAATPSVHE KPEAFALVAG VEGVTVEGDN IHQHPSGPSG LTRDLVAAVP SFGFNRKKRM ARQRRSSSTI KLLSFTNNSS SSSSSSSHVP SPPLPTRVID PKRLRFLFQK ELKNSDVSSL RRMILPKRAA EAHLPVLESK EGILISMDDL DGLHVWSFKY RFWPNNNSRM YVLENTGEFV STHGLQLGDF IMVYQDSLNQ NYVIQAKKAS DEDVYSDIAR NGVNDLFLHD YEATKSSNYY YPMMEDNGMS FIYDTTLSFS NDCPLDFLGG SMTNYSRMGS LESFGSVENL SLDEFYQL // ID A0A0D2QWQ8_GOSRA Unreviewed; 489 AA. AC A0A0D2QWQ8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43598.1}; GN ORFNames=B456_007G209200 {ECO:0000313|EMBL:KJB43598.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43598.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43598.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43598.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 46 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 109 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 264 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 392 488 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 46 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 109 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 264 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 392 488 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 489 AA; 55530 MW; 87401B486516B94D CRC64; MKLDGKLWVQ NGWRKFTEHY SLELGHFLVF RYQRNCRFHV LIFDRSASEI HYPYANNIST DMTKKPVLQC PRPPKIMRAS NNGFSATKGN EKSKALERAS SAIKSGNPFF LVFMQPTYVG LHSKSIPKEF SRKYLMDQGD VILCDSSGNT WSAQYRATLG MNGQPYVKLL NGWDAFVRDN NLQVGDVCAF ELIDCIDISF QVVIYSSKKA DFHGSPAQME AGMTLTRSEC LEPVKARETA FHREMKVREK ALQRALAFTS ENPFFVVVLR PSYVQSHALC ISNDFTRKHF KTTLTNIGIA LRLSNGKSWP AEYHQRSIGN PNARICNGWR AFVNDNKLKV GDVCVFELVS DTQISVKVII FQAIADEDSH PSQGASEEAL GLTSQSAKAP LIFRRVVLPL HLKEDCVDIP FRFVEQYFEP NVQKLILQVA DRTWPVEITS NPRIRIAKLT SGWIKFAREN SLREGDICVY ELDTVDNNLL KVSISKYAS // ID A0A0D2QWV6_GOSRA Unreviewed; 302 AA. AC A0A0D2QWV6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB24104.1}; GN ORFNames=B456_004G128200 {ECO:0000313|EMBL:KJB24104.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB24104.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB24104.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001743; KJB24104.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 33804 MW; 8D9BDEE25365BBCF CRC64; MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRG AGEVGKDRFF IDSKRKPDAP TLVSFHPHQH YFSLGRSIPW NPLLMRPPPT GRDHLYLSPV NPINRRNSYY GGYPTGSNVV NPGDTVGSLF YLRSAVGSGA PQMGMTQRQQ QGGVVEPIVF DSVPVVQSKA APKRMRLFGV NMECPMPESD ECEMLTTSTL AHATMAPQHP DQPPSSSQHP LQLRLYNGTP LPPTDFLNAN KGKASLSFDL DT // ID A0A0D2QX13_GOSRA Unreviewed; 492 AA. AC A0A0D2QX13; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43693.1}; GN ORFNames=B456_007G212100 {ECO:0000313|EMBL:KJB43693.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43693.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43693.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43693.1; -; Genomic_DNA. DR RefSeq; XP_012491791.1; XM_012636337.1. DR GeneID; 105803906; -. DR KEGG; gra:105803906; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 435 462 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 492 AA; 55619 MW; 3D9902A98076D0B9 CRC64; MDRRVKKEAE EIPQRTMSFA GRRLKSAGEE DFILALSTHT PKLNPSSSEK KEISKKANAL TERKQKRKKC QSETIIKPAV SDCGEKKISS MKNKDVGDGR CIAEIKSPAM ICAEEIQSNL EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTTI TLEDESGNQF HVKYYADKTG LSAGWRQFCS AHNLLEGDVL VFQLVEPTKF KIYIIRANDL NELDGALGLL NLDAYTKQSD ADDAETGPTV SKSTKRKRPK PLPLASVRKK NKRSGLQILS CNVGQPAEQS ENDSEEVGSE VLEGFKRTEY AIQFKDITSF ENILVDGLVI DPELSEDIRS KYYQLCCSQN AFLHENIIQG ISFKFKVGII SETVNIADAI RTCKLTTSRD EFDSWDRTLK AFELLGMNVG FLRTRLHRLV NLAFESEGAA ETRRYFEAKA ERDQTENEIR NLEAKLTELK DASKTFGFEM ESLQSKAETN EFRFEKEVKA PW // ID A0A0D2QXJ0_GOSRA Unreviewed; 350 AA. AC A0A0D2QXJ0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB21851.1}; GN ORFNames=B456_004G018300 {ECO:0000313|EMBL:KJB21851.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB21851.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB21851.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001743; KJB21851.1; -; Genomic_DNA. DR RefSeq; XP_012472976.1; XM_012617522.1. DR GeneID; 105790106; -. DR KEGG; gra:105790106; -. DR KO; K09287; -. DR Proteomes; UP000032304; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 91 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 151 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 91 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 151 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39616 MW; 85612D5572267542 CRC64; MAATKTSRSG GGSGGDDYMF RASKRLKTET SGGLARFKGI APQQNGHWGA QIYANHQRIW LGTFKSENEA ALAYDSAAIG LRIGDPHRNF PWSYDNIQEP NFQNLHTTRD ILNMIKSGSY QSKYADYTKS SANHNKNTIH NDTKFACQQL FQKELTPSDV GKLNRLVIPK KHAVKHFPHI ENDHQTFTTA NGGCEDVELV FYDTSMKMWR FRYCYCKSSQ SFVFTRGWNR FVKDKKLKEK DAIAFYTCEC TGEIEHGRGF FLIDVNYNGG DDENGGRIDV FKRLGSSSVL RHHQGELHVG LELNLGTNFY CNLDEKHNEN GEEQGLSGLK SSSSHSVKEK RITLFGARIN // ID A0A0D2R1Z5_GOSRA Unreviewed; 576 AA. AC A0A0D2R1Z5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_010G046000 {ECO:0000313|EMBL:KJB64372.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB64372.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB64372.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001749; KJB64372.1; -; Genomic_DNA. DR RefSeq; XP_012452124.1; XM_012596670.1. DR RefSeq; XP_012452125.1; XM_012596671.1. DR RefSeq; XP_012452126.1; XM_012596672.1. DR GeneID; 105774251; -. DR KEGG; gra:105774251; -. DR Proteomes; UP000032304; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 576 AA; 63370 MW; 7CF421B46D43DB2A CRC64; MPPPRPPAAE VRHVDLRIWR ACAGSSVQIP TVNSIVYYFP QGHVEQSCGS TPLLSSLVLS RPLIPCVVSD VHCLADPRTD EVFIKLFLVP VEPSRLPNQF LDVNGEVEDP DKIVSFAKIL TPSDANNGGG FSVPRFCADS IFPPLDYNAD PPVQTLTVTD IRGGVWEFRH IYRGTPRRHL LTTGWNKFVN QKKLIAGDSV VFMRDCNGKM FIGVRRALKR GEGGGDSRRW REPTGGGATK GDGRGRMTAE VVVEVAERAA KGLPFEVVYY PRPGWTDFVV RAELVEAGLN IYWAGGTRVK MAVETEDSSR MTCFQGTVIS GALSDSGPWI GSPWRMLLVA WDEPDLQNVR RVNPWQVEIA TSLPLQSSFP LAKKSKFSQE SGLADAEGEI MFPMTGLTNS TMRYMNPSLL NYNSFPAGMQ GARQNHFHVQ GLTNHVSENT PMMSTDASSS NYWVPKLKRI STELNIGSSQ SDNLSPDSQS SMVSFGTEFT ENAGCNLSKV GVNSFQLFGK TIHMKEPGGS MFGNVGSMED DSGKRYDEAV REKNSLDLSS TNDYSKLHDR IDVKSESASA FKGFSL // ID A0A0D2R595_GOSRA Unreviewed; 396 AA. AC A0A0D2R595; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB14545.1}; GN ORFNames=B456_002G130300 {ECO:0000313|EMBL:KJB14545.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB14545.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB14545.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001741; KJB14543.1; -; Genomic_DNA. DR EMBL; CM001741; KJB14545.1; -; Genomic_DNA. DR RefSeq; XP_012466546.1; XM_012611092.1. DR RefSeq; XP_012466548.1; XM_012611094.1. DR RefSeq; XP_012466549.1; XM_012611095.1. DR GeneID; 105785158; -. DR KEGG; gra:105785158; -. DR Proteomes; UP000032304; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 396 AA; 45351 MW; A23CF3CA963118A9 CRC64; MEDTCKDCRD WEEEIFWTHF QSVHFTQFLH GDFLQRLEIP EKFAKNIKKK LPETVTLKGP SGIIWDVRLT VDDDDTLFFN GGWKTFVKDH SLVANDFLIF KYNGVSHFDV LMFDGKSLCE KASSYFVRKC MHTESDATRQ TKRKVNENSD EILHNSSQCG LESGPEKSTN NDMDARPSRK PIKSAASKKI RNSDNGTQSI HAKQSLVGKE LPTFPGEVKV ERLETEYEHT TMDGDGDVFG LWHTTGKRFV TQFEKTNVIL KAQEALTNEG FMIIMKPTHV GRRFYMAVPT AWVAKYLPKD NADVILRMNK RTWKTRFYYH RSRDCGGLSG GWRNFVNDNN LEEHDVCVFQ PANIGRKPMI LDVNIFHVLQ KAVPLSQADP LPSSPELIAS TPDMDS // ID A0A0D2R709_GOSRA Unreviewed; 904 AA. AC A0A0D2R709; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB27679.1}; GN ORFNames=B456_005G004300 {ECO:0000313|EMBL:KJB27679.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB27679.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB27679.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB27679.1; -; Genomic_DNA. DR RefSeq; XP_012481341.1; XM_012625887.1. DR RefSeq; XP_012481342.1; XM_012625888.1. DR GeneID; 105796278; -. DR KEGG; gra:105796278; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 904 AA; 99520 MW; 8AF01C3C3F98AC39 CRC64; MALKSCMNVL CGASTSIEWR NGWTLRSGDF ANLCDKCGSA YEQSIFCDVF HSKDSGWRDC NSCGKPLHCG CIASRFLLEL LDGGGINCVS CAKKSGFNHM IEDEKPNGFG MVKADAGQLH STSADNQLSG ASIENLQLMQ LSNNAESIGL RQLLQLHNDD SSGSLGQMKQ DEFLPPPREI GSTCLTSINQ ASNGSVEAVK PTTSKVNIFD SLPQTNLSIS LGGSLGNQNG FPSSVVDEKS KMSSVLQQAS KSRHLLPKPP RSVLATGLEM NAGTVPQIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLRAG DTVTFSRKDP EGKLVMGFRK ATNTAVVQET LPPAIPNGTL SSESYFSGVF ENLPIISGYS GLLQSLKGSA DPHLNGLSKH SSLAGGDISG HKSDMHEDRI REDLLLTSML TPERKRTRNI GSKSKRLLID SQDALELKLT WEEAQDLLHP PPSIKPSIVT IEDHDFEEYD EPPVFGKRSI FAVRSTGGQE QWAQCDNCSK WRRVPVDALL PPKWTCADNN WDQSRSSCSL PDELTPRELE ILLRLNTDFT KRRIIAFHRQ TQEYESSPGL NALANAAILG DNVADSGTTS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCLT VKRRFKTLMM RKKKRQSERE AEIALRNQQA WGPREEAEVE SSSKHVSPHH DPSENEARSV NKLESKNQSN NNKLVSKLVE ANKGRIDLNC DPCRDDDSQF GSSTRMSMMN LLHVASLPLE TYLKENGLTS LVSDQQAIST SHAPPQTGNT SEPYDDQCSH SATEEHETRD EVNT // ID A0A0D2R8J4_GOSRA Unreviewed; 599 AA. AC A0A0D2R8J4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_010G157400 {ECO:0000313|EMBL:KJB66767.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB66767.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB66767.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001749; KJB66767.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 599 AA; 65274 MW; C0C3AAFB18565B5C CRC64; MGGLIDLNST EDDETPLSGS LSPSSSSASV LSAPGSGSSV CLELWHACAG PLISLPKRGN VVVYFPQGHL EQVSDFSGVA AAYDLPSHVF CRVVDVKLHA EGATDEVYAQ VSLVPETEQS EQKLEGGKTE ADGEEEDAET NIKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YNQQRPSQEL VAKDLHGSEW RFRHIYRGQP RRHLLTSGWS AFVNKKKLVS GDAVLFLRGE DGELRLGVRR AAQIKDGSSF PSSCSQQLNC SNFADVVHAV SMKSVFSIYY NPRASSSDFV IPVHKFWKCL DPSFSIGMRF KMQFEAEDAA ERRHSGVITG ISDINPVRWP GSKWRCLMVR WNDIDANRHG RVSPWEIEPS GSVSGSNSLI SPGSKRNRVG FPSGNSEFMV PDGIRASDFG EFLWSQLSGT RSGWSSLMQR YNTHSRTRPF APSTQTSSPS SVLTFLQGKL FPSSASEHDS RARDLGSSDL FGHSIGSVQL GDASPLAAQP VFRTSQELDS SCKSSCRLFG FSLTEGRHDA SKEEDVVQAT SSLAAGAFLP CVREEFHPKP SSVTDTVGSN YTEASNLYSV RDMVLDIAL // ID A0A0D2RAX2_GOSRA Unreviewed; 511 AA. AC A0A0D2RAX2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB26791.1}; GN ORFNames=B456_004G260200 {ECO:0000313|EMBL:KJB26791.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB26791.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB26791.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001743; KJB26791.1; -; Genomic_DNA. DR RefSeq; XP_012476850.1; XM_012621396.1. DR GeneID; 105792694; -. DR KEGG; gra:105792694; -. DR Proteomes; UP000032304; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 412 507 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 412 507 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 511 AA; 58715 MW; CCF4A9EB7204971E CRC64; MFISSMNHPK TLHFFRIILS QTQKLPLPKR FVSLYGDDLS NTVIVKAPTG PEWKVELMKC DGEIWLANGW KDFADYFSLK YGNLLIFRYE GHSRFYVFMI FDQTTFEIEY PNGIDNHDVE LQIPDVEEVG SEDVVEIVNN VSPSRKTTEK TRSSPRKRTR MQGATNAKKS EFRMSSRDGS KIGPEQAGGG TSAAQRSSAS SANHFGSEKP FFVVNIQPSY ITAFHANVPF TFARTYFTWK EADVILKDRD GRTWPIHLKV YNKYHCTSFG RGWKAFAIDN DLRVGDSCAF ELLEGPEISF RVTIFRNPED SNDRHTSTRG SKIGHGRHKR ELNARSQIEY DHSSEDEMIR YSKRNKGSQV PRRKIKTRDG KFDEAMQNKT SARRAIQRLP SKGTAIARAL ERVSKLRSAH PLFKVIITTN FLQRGFPSIP ERFCDEHMEQ IPEDVTLKYK HKSWRVRMII CSDRAGRFSV GWRAFVQGNK LKVGDVCVFK MIKKTNIVFE VSIFRDGLTL G // ID A0A0D2RB72_GOSRA Unreviewed; 721 AA. AC A0A0D2RB72; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48488.1}; GN ORFNames=B456_008G071300 {ECO:0000313|EMBL:KJB48488.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48488.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48488.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48488.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 224 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 386 485 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 717 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 224 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 386 485 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 615 717 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 721 AA; 81555 MW; A9F092BABFC468FF CRC64; MFASKTPHFF KIILEATIRD KKLGIPRKFV RKYGKGLSSS VLLTVPSGDT WHAQLTKSDG VVWFQNGWQA FAEYYSLQYG HFLVFRYEGN GKFLVLIFDM SASEIEYPCK SHIEDHNSDD QVCLKLVNKE AKDDTCDGTL YETPPCKETR KKKKKKRSRP PCSKPRKKLK TTQKDKNEKD WEDESTSEDD MQTKVPRDEH AFGVIEYDKA LQRASSFRSE NPFFLVIMQP SYINPGRKMC IPKEFTMKFL KENLGDLTLC TSEGKTWSTQ YWRYISRNKY TKAIIHIGWR QFMLDNNLEA GDVCVFELIS QTESMLKVII YRVRQDTSCS SPLGGINSSE NGGNVNSSTL GSTESNHDCL MRPMTPVEKA RAILKASNFK SKNPFFKVVM QPRYLILRCS LGIPYKFVNR HLDEEKEEAI LRVSDGRTWV VKFTVKVFTG GQHKAEFSTW RAFARDNNLE VGDVCVFELI NRHENSFKVS IFSAAPGANS SLSPQADDAE ASQVASKNCL VPRIEADDDF GNCYAGNSTD DAIASQVASK DWLVPKIEAD DDFGKCHVGN SSSAAQFPAI GYQETEEEVQ PTISTRPRGP QRLQAGEKAK ALQRASGFKS QNPFFTVAMQ PSYVSNGYRL AIPLDFSRKY LRNGSGNAIL SMVGDGKTWL TKYHREAKGT NPRAKLIDGW KTFAKDNNLE IGDVCVFEMI NSEGYQLSLN VAIYKPQEDQ T // ID A0A0D2RCL0_GOSRA Unreviewed; 534 AA. AC A0A0D2RCL0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB29524.1}; GN ORFNames=B456_005G105400 {ECO:0000313|EMBL:KJB29524.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB29524.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB29524.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB29524.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 226 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 427 523 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 226 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 427 523 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 534 AA; 60467 MW; E655AB0E5546B498 CRC64; MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRVSASV LLKGPSGYSW NVKLVQRNDD LLFDEGWADF VADHSLECGD FLVFRYDGDL VFEVKVFDQS SCEKEVAFHC KCSQAGSVFN GILGQKRYRE EEDVSLDQDC EELLKRIRQS SSESVRDEEH CGRELILATT SCQGLTSCDE NHDGTILKIT GKEDDLNLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT LNIPYQFAME HLPNCKTELV LQNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA GDICIFELVH KFEFRVHILR VGQEDLDRQS RKAVLDRSDS TLLKKLVKNT SKVHSKLKKV QICDNKGSKV LDKWKYGNAA KKSASFVLCS LSRSGTEKQA AISGLRMMMT VDEEKAARSF ASRFPSFVRI MRKFNISGSY TLKIPYKFSK EHLPYCKTQV VLRNLQGKCW TVNSLPDSKG RAVHTFCGGW MAFVRDNEIK IGDICIFELV NNYEMRVHIS GPGRKGLDRQ HTSL // ID A0A0D2RED3_GOSRA Unreviewed; 628 AA. AC A0A0D2RED3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G126200 {ECO:0000313|EMBL:KJB49578.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49578.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49578.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49578.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 90 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 513 605 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 90 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 628 AA; 70444 MW; DED2DB4BCA93098F CRC64; MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPERED MNQATPTQEL TAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGVRR LGNQQSTMPS SVISSQNMHL GVLATAAHAV MTQTLFVVYY KPRTSQFIIG VSKYLEAINN RSSVGMRFKM RFEGEDSPER RFTGTIVGVG DASPHWSESK WRSLKIQWDE PAMIQRPERV SPWEIEPFSA SASINLIQPA VKSKRPRPVY ILASDTTTNS TGSAFWCHGS TKSHELARAG SIAEVQSSES SQVVWPMRQN EADAGYNTRA RLENAWPPSS LVNVSLNFFR NPADASPVEL RTSNDVMRDQ VEKGKKLEIS TGCRLFGFNL TNSNSAVSGT VIAPSHIDEN PETFQSPKQQ KQNASETSTK EIKAKHGTTS SMRTRTKVQM QGIAVGRAID LTVLKGYDDL INELEKMFDI EGELRHRTKW SVVFTDNEGD MMLVGDDPWV GFCKMVRKIF IYSVDEVKKI NGRCKFQASS LEGEGTVVSL GLEHRSGT // ID A0A0D2RF85_GOSRA Unreviewed; 337 AA. AC A0A0D2RF85; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17835.1}; GN ORFNames=B456_003G020700 {ECO:0000313|EMBL:KJB17835.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17835.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17835.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17835.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38175 MW; BD16BAA09CDCD64B CRC64; MTRKPKRNPS FFKILIGNFD KKQRIPPAFV KYIFKGNVPT MLTLYSDSGN SWRVRIKVEQ GSYFFNNGWS KFVKYRDLEI GDFLVFFLVD SSTFDVFIYN RTACAKIIIL AAKKQKGRSP RVSRQIEQTP SHKCTSTSKK PRTVPRAQEV EFVSGVTPKS VSYVMVVKGY NKYYAGIPRC FTEEAGLGKV SMVMIKGPSG MWPMMTTFSS KQVLLSVGWS KFLHENEIVI GDTLLFEYVP NTGHLIHVQV VNKDGTGNCG SLAGKRPRDR PREQTELPPS TKYASSYKRT KGVSELILEQ ASFVVVLKKY HQYSVPVFCQ RNKLGRGTEQ GDKGLRG // ID A0A0D2RFB0_GOSRA Unreviewed; 191 AA. AC A0A0D2RFB0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB17865.1}; GN ORFNames=B456_003G020200 {ECO:0000313|EMBL:KJB17865.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB17865.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB17865.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB17865.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 87 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 87 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 191 AA; 21975 MW; 6900FD0903CB5A33 CRC64; MEKTIPTEFV REHLMKEHRS VTLCNYSGKT WIANFKQSQI GKNQYSYLQT GWGTFVRDNN IQFNDVCAFE LINSTEISFK VVIYKGQHAN CHQILASEMQ YPYTRENHSQ SDEILEQNIE ESEDDDTTEI LEVISPSLKV REELQSSCPQ SHKMMSSTNS AIKTKTVCNG IKGDKRTKSS YNSTVEDTRK V // ID A0A0D2RFP2_GOSRA Unreviewed; 637 AA. AC A0A0D2RFP2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB69407.1}; GN ORFNames=B456_011G022400 {ECO:0000313|EMBL:KJB69407.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69407.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69407.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69407.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 342 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 569 619 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 342 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 637 AA; 70370 MW; ACC7AE8AD67D8C19 CRC64; MTSTSVATSS SRICFNSVCN DLKSERPRKG WQLRTGELAE LCDRCASIYD EGRFCDAFHL NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS SLPERFKDCS AKGWSQLTGS GPAPWRQAPG LFNSSTSQPE LHSRVPYEVD LSTGIDRLNV SERLSIPSLE KKKNEDFPER LMNGPLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK EDSSNPPFGL AVPYTSIDEA NGQMGVSGTH LRPNPQPSLA KQFHSNPHNG LDSSGETQMR NGRPRADGRG RNQLFPRYWP RFTDQDLQQI SADSNSIITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN VVSIEGFEFE EYEDAPVLGK PTIFATDKSG EKIQWAQCED CFKWRRLPSD VLLPSKWTCS SNSWDPERSS CSATQELTAE ELENLLPHCN LAAFIAR // ID A0A0D2RIS1_GOSRA Unreviewed; 669 AA. AC A0A0D2RIS1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_003G078000 {ECO:0000313|EMBL:KJB18970.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB18970.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB18970.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001742; KJB18970.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 104 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 669 AA; 75062 MW; 52E9D7E6883F0DA7 CRC64; MELWKLCAGP LVEAPRARER VYYFPQGHME QLEASTNQEL NQRIPLFNLP SKILCSVVHI QFLAEQETDE VYAQITLMPE PNQPEPTTPD ACPPEPPKPT VCSFCKVLTA SDTSTHGGFS VLRKHATECL PPLDMNQATP TQELVAKDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF LRGESGELRV GVRRVARQQS SMPTSVISSQ SMHLGVLATA SHAVSTQTLF VVYYKPRTSQ FIIGLNKYLE ALNNKFTVGM RFKMRFEGED SPERRFSGTI VGVEDFSPYW KDSKWRSLKV QWDEPASIPR PDRVSPWEIE PFAAPIPPTL GQPVAAKNKR PRPTAEIPAL ELPSTASAPW NSGVMHTHDL MRRNITAEAN RNENHVIWHM QTEMSSSCSS VLKTQNEGSW LSSPCMSVSK HRFPDARDDS KCASGWPVLS GLSNPQVNND STFDPIEKVK KSETASSCRL FGIELINHSA SSRQLERTPT QLSTMTASTA EGHHTLSPNN SCQKSEISKD SNEKQEQLQL QAKEIQSRQS CPSSTRSRTK VQMQGVAVGR AVDLAMLEGY DQLIDELEEM FDIKGELRPR NKWEIVYTDD EGDMMLVGDD PWQEFCSMVR RIFICLSQDV KKLSTGSKLP MACIEGGEGT VISSESIEN // ID A0A0D2RJD3_GOSRA Unreviewed; 850 AA. AC A0A0D2RJD3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G210200 {ECO:0000313|EMBL:KJB51288.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB51288.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB51288.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB51283.1; -; Genomic_DNA. DR EMBL; CM001747; KJB51285.1; -; Genomic_DNA. DR EMBL; CM001747; KJB51287.1; -; Genomic_DNA. DR EMBL; CM001747; KJB51288.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 727 811 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 850 AA; 94706 MW; 691793E7C04EFC36 CRC64; MKGNCVNVRG GESCSSGYSE SMDARKTMEG QNGHSTHQAA IRDPETALYT ELWHACAGPL VTVPREGERV FYFPQGHIEQ VEASTNQVPD QHMPVYNLPS KILCRVINVQ LKAEPDTDEV FAQVTLLPEP TQQDENTVDK ESPVPQPPRF HVHSFCKILT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELVAKDL HGNEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQQ GNVPSSVISS HSMHLGVLAT AWHAFTTKTI FTVYYKPRTS PAEFIVPFGQ YMESLKNNYS IGMRFKMRFE GEEAPEQRFT GTVVGIEDAD PKRWQDSKWR CLKVRWDETS SIPRPERVSP WKIEPPLAPP ALNPLPMPRT KRPRSHAVPS SPDSSVLTRE GSSKVTIDPS SASGLSRVLQ GQEFSTLRGN FAESIESDTA EKSVMWPPSV DDKNNDVVSA SRRFPSENWM SSGRHERTCT DLLTGFGSNA ESLHGYCSSL VDQTLVAGNS TRKQSLHQEG KLGSWSLMPS GLSLKLADTN AKSPLQGSDV PYQMRGNGRC SGFDDYPILQ GHRIEHSHGN WLMPPPTSSH HESNPVQSRD LMPKTSFVQG HENGKYREGN CKLFGIPLIR NSVASEPTVS HTNALSKPVA HMQAASHQVL EFVSAQNSEK LKVLQLAEVE DLSNYNEQEK QPRTREIQSK PSSASTRSCT KVHKQGIALC RSVDLTKFND YDELIAELDG LFEFKGELMA PKKNWLVVYT DDEGDMMLVG DDPWQEFCAM VRKIGIYTRE EVQKMKPGSL SSKGEDNSVS TGGVDGKEMM CPSASSAENC // ID A0A0D2RKB5_GOSRA Unreviewed; 93 AA. AC A0A0D2RKB5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32299.1}; GN ORFNames=B456_005G241200 {ECO:0000313|EMBL:KJB32299.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32299.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32299.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32299.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 93 AA; 10943 MW; 0AB6D64D4A9C1E23 CRC64; MREHFKLLEG SQSLDFQVMD KYSKVWTFRL YTRKNDGHPK PVLTKGWLDF VKRMGLRVGD KVIFVLHGNH NDHLGILVKR NLKLLGSEHW GDL // ID A0A0D2RKN6_GOSRA Unreviewed; 274 AA. AC A0A0D2RKN6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32389.1}; GN ORFNames=B456_005G238700 {ECO:0000313|EMBL:KJB32389.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32389.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32389.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32389.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 104 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31409 MW; D7EB31E431E43C3B CRC64; MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMQENIRD CRQKASRKRP RDKNYNDHVV KGTKRVSEQD FAKSPVIERA EQVQANLSAE FPSFFKIMIP SVVCRGFWMS LPKEFCQLNL PNHDATVILV GETGKEYRIN FLVQRKALSG GWKKFSKEHG LLVGDALVFH LIRPSKFKVY IVRMNGLDEI DAALGLLRLQ SSANQTGICL FLGPKKTSQR MALWMLAPVK WKALGLLRLL ALQMPLELPR FPPCDLVSCR GTTL // ID A0A0D2RL59_GOSRA Unreviewed; 346 AA. AC A0A0D2RL59; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB30336.1}; GN ORFNames=B456_005G138100 {ECO:0000313|EMBL:KJB30336.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB30336.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB30336.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB30336.1; -; Genomic_DNA. DR RefSeq; XP_012478634.1; XM_012623180.1. DR GeneID; 105794154; -. DR KEGG; gra:105794154; -. DR KO; K09287; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 189 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 189 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 38373 MW; E0672A9EA457E913 CRC64; MDGGCIAIDE STTSDSMSIS ISSLLPPVTK YPDSLCRVGS GTSVIVESKA ESKKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGPDAV TNFKHLQETE EDGIEMAFLN THSKAEIVDM LRKHTYNDEL EQSRTRRCYG FDGNGKRVVG NEAVFGSFGA EVKARDQLFE KAVTPSDVGK LNRLVIPKQH AEKYFPLQSG GASSKGVLLN LEDVTGKVWR FKYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DIVSFQRSTG AEKKLYIHWK AKSGVENPVG LRLFGVKIFG GAATGNLGCN NGKRTREIEL LALECSKKQR AIINAL // ID A0A0D2RLL8_GOSRA Unreviewed; 881 AA. AC A0A0D2RLL8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB71532.1}; GN ORFNames=B456_011G127500 {ECO:0000313|EMBL:KJB71532.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB71532.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB71532.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB71532.1; -; Genomic_DNA. DR RefSeq; XP_012454319.1; XM_012598865.1. DR GeneID; 105776293; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 600 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 881 AA; 96790 MW; EC2118EACF8D7401 CRC64; MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC SSCGKRLHCG CIVSRSLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKIDAGQL HSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSLLQMK QEEVLPPAID IGSTCLSNTN QASNGSVQAV KPAIFKANIS ETLPQTNLSI SLGSSLGNQN VFPGSVVDEK GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CMQSMQLQAG DTVTFSRMDP EGKLVMGFRK ATNNAVVQSP KGSTDPHLNA LSKHLSSTGG DISWNKSGKH EDRIREGLLL PSMLTPERKR TRNIGSKSKR LLIDSQDALE LKLTWEEAQD LLRPPPSIKP SVVTIEDHDF EEYDEPPVFG KRSIFAVRST GGQEQWAQCD SCSKWRRLPV DVLLPPKWTC ADNNWDQSRS SCSAPEELTP RELENLLRLN RDFKKRRIAA FTRPTQEHES SSGLDALANA AILGDNADNS GTTSVATTTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCV VCMTVKRRFK TLTMRKKKRQ SEREAEIAQR NQQAWGPSEE AEVDSSAKHV SSSHLNPFEN EARSANELES KSQSSNKLVE ANKGQIDLNC DPDREDDSQL GPNRTSMTSL VRVASLPLET YLKENGLTNL VYEQQGNSAS NAPPQSMSGT VEGETQENSC FPSATEEPES KDEENGETGS DRVDDNNDKD P // ID A0A0D2RLS9_GOSRA Unreviewed; 124 AA. AC A0A0D2RLS9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32839.1}; GN ORFNames=B456_005G264500 {ECO:0000313|EMBL:KJB32839.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32839.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32839.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32839.1; -; Genomic_DNA. DR RefSeq; XP_012480603.1; XM_012625149.1. DR GeneID; 105795503; -. DR KEGG; gra:105795503; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 124 AA; 14615 MW; 6DA654F13A14C533 CRC64; MTKAIVSKQL KTTDIEKRLT IPSKSLKYFP PLDGNHVVQF KARDESGHHW KFQIYTRKGK RYLKPVLTKG WREFVCTKEL TIGDKVEFYM EEKEQGEAMY SVRVFRAVRI FGRIVAYVLD HKSS // ID A0A0D2RNF7_GOSRA Unreviewed; 856 AA. AC A0A0D2RNF7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G008700 {ECO:0000313|EMBL:KJB33384.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB33384.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB33384.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB33384.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 764 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 856 AA; 94868 MW; C03E10C5F538724A CRC64; MRLSSSGLNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAISH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPS TLPSFHAFKD GDMSINSQLM WLQGGVGDQG LQSLNFQGFG VAPWMQPRLD TSSIPGVQPD LYQAMVTAAL QDMRTVDSSK IGSQSLLQCQ QNQSTSTGSP ALVQRQMLQQ SQTQNGFLPS FQENQTASQV QLLQQLQCPN LYNDQRQKQQ QRQSQETQQL PPVPQQISDV IPAFPSVSAN QAQSSLPAVD SQCQQSTFSD HLGNSIATSD VSSMQSILGS LSQMGASHLL NLNGSNPILS SSTFLSKPAA IEPRLSSRVA NSVLPQVEQL GTAQSNASEL HNLLPPFPGR EYSAYHNATD PQNNLLFGVS IDSSSLMLHH GMTNPKSIRN ENDSMSLPYA ASNFTSASGT DFPLNSDMTA SSCVDESGYL QSSENVDQVN PPTGTFVKVH KSGSFGRSLD ISKFGSYDEL RCELARLFGL ERQLEDPQRS GWQLVFVDRE NDILLLGDDP WQFSLFFCDH QGIREQCVVY QDTIPT // ID A0A0D2RSA2_GOSRA Unreviewed; 406 AA. AC A0A0D2RSA2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32386.1}; GN ORFNames=B456_005G238600 {ECO:0000313|EMBL:KJB32386.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32386.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32386.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32385.1; -; Genomic_DNA. DR EMBL; CM001744; KJB32386.1; -; Genomic_DNA. DR EMBL; CM001744; KJB32387.1; -; Genomic_DNA. DR RefSeq; XP_012480246.1; XM_012624792.1. DR RefSeq; XP_012480248.1; XM_012624794.1. DR RefSeq; XP_012480249.1; XM_012624795.1. DR GeneID; 105795254; -. DR KEGG; gra:105795254; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 356 397 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 406 AA; 46464 MW; 60500EAB74FBB4E8 CRC64; MGTKIDEPQI PEMSLDPPEI TNPQPNVMER VEEIQANLAG RFPSCMKTMV RSNVTHGFWL HLPMPFCKLH MPKQDTTIIL EDESGEEYKA SYIAQRTALS AGWKAFSADH KLVEGDVLVF HLVGSSKFKV YIVRAFKSSE VDRCFRSLEV DIQAKPIRSI RMKRTKRPSK KAKCLELLPL DPPDDNVENK SLMVLDTDSE HLTDRYDNDN KDPSSGLDDG IKSLASVIDF KEIKSIDNFI IIVNGSRIDS ELSEYHRTKY YELCCSQNSF LHDNLLESIS SKLALEIITQ IINIAEAIRA CKISTSQADY TLWDKTLKGF ELLGMNVGFL RAKLNRLNTL SLELQQGVNM ERCKEQDHMK EEKKSLEQKL VKLKDAMHKL DTEIETLKEN AEKYELIFRE EVTAAW // ID A0A0D2RSA7_GOSRA Unreviewed; 390 AA. AC A0A0D2RSA7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32391.1}; GN ORFNames=B456_005G238700 {ECO:0000313|EMBL:KJB32391.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32391.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32391.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32391.1; -; Genomic_DNA. DR RefSeq; XP_012480253.1; XM_012624799.1. DR GeneID; 105795255; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 194 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 194 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 333 381 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 390 AA; 44524 MW; 28F892FD78A1204E CRC64; MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMENIRDC RQKASRKRPR DKNYNDHVVK GTKRVSEQDF AKSPVIERAE QVQANLSAEF PSFFKIMIPS VVCRGFWMSL PKEFCQLNLP NHDATVILVG ETGKEYRINF LVQRKALSGG WKKFSKEHGL LVGDALVFHL IRPSKFKVYI VRMNGLDEID AALGLLRLQS SANQTGIYAA GKNNSRPFCN DINQYEVHKY GRSFLRAQEN QSENGTLDVG SSKVEGIRFT KTVSIADAIR ASEISTLRSG FVPWDNALNS FDFLGTDVGS LHKRVRHVLS HTFESKPELK LKYKEAKLER AYAEQETKSL ESDLSGKKEE MQRLDAEIDA LTVNAKRYEL MFEAAANAPW // ID A0A0D2RSI0_GOSRA Unreviewed; 551 AA. AC A0A0D2RSI0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB34864.1}; GN ORFNames=B456_006G087600 {ECO:0000313|EMBL:KJB34864.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB34864.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB34864.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB34864.1; -; Genomic_DNA. DR RefSeq; XP_012484717.1; XM_012629263.1. DR RefSeq; XP_012484718.1; XM_012629264.1. DR RefSeq; XP_012484719.1; XM_012629265.1. DR RefSeq; XP_012484720.1; XM_012629266.1. DR RefSeq; XP_012484721.1; XM_012629267.1. DR RefSeq; XP_012484722.1; XM_012629268.1. DR GeneID; 105798977; -. DR KEGG; gra:105798977; -. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 325 426 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 325 426 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 551 AA; 63265 MW; 2DEE31316A04E00C CRC64; MHGVLCRISP RLGPHLNQRW RQHYLKHTHW SDGYPETTFL RPLVSQPTTP LAISRYLTLV VSLLSLYLQF HGLFLSPQPI PLHHLTRFSR FFHTWTHPNG SILQPHDLIE PHFVLTQNRK EEHTQSSALS STFFSDRNQH CNPLDSSSSH CTFVLMENSY IPFFSTTATS STTPITTTTT IHSSSNMDWS QNSDFSMFEP MNSQFQHPSQ LLSPNQSLQF PYNRSIEQAP VYPFFTGQKG FEFGVRKEQE RRTNDPYRTK LARINRKLAR QRSLQRNANS GASTQVDARR LINSGADTDT NKNKDNKKDQ YRFCTPDNQR LRVVLKKELK NSDVGSLGRI VLPKRDAEVN LPPLSDKEGI QVMIKDVYSN HMWTLKYKFW SNNKSRMYVL ENTGDFVKQN GLGTGDSLTL YEDESKNLYF SITKVATVAV ESSSNQQYYH NVNNNGEEGN DNSNNIGNMY LPFTSQSKDD EATSLELFME QQEPNDLIMT LPMDSTYGSH TMFPEETRHL PNNVGQTPSL SRSVDDISIN FDDCYGGLDM LPEVNQYNFS F // ID A0A0D2RSI2_GOSRA Unreviewed; 349 AA. AC A0A0D2RSI2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32441.1}; GN ORFNames=B456_005G240900 {ECO:0000313|EMBL:KJB32441.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32441.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32441.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32441.1; -; Genomic_DNA. DR RefSeq; XP_012480289.1; XM_012624835.1. DR GeneID; 105795280; -. DR KEGG; gra:105795280; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 40441 MW; 99CE78288ACEEAF3 CRC64; MPRPFFHKLI LSTTLQDKKL RIPDNFIKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKAW FKEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFDLYNS EINYQTNALV GTQYNLGRQY PFEELEDDEC VSPAMPNLFG RSKLNCINWS GEVNHHAPKG VNNQPIRVKL HSSGAELPKL KKPGRKKQKF QPSEEDSSLG HEDDMEMRNR FYESASARKR IVTAEERERA INAAKAFEPT NPFCRVVLRP SYLYRGCIMY LPSCFAEQHL SGVSGFIKLQ LPDGRQWPVR CLYRGGRAKF SQGWYEFTLE NNLGEGDVCV FELLRSREFV LKVTVFRVME SAGLMDRSQ // ID A0A0D2RTN2_GOSRA Unreviewed; 1106 AA. AC A0A0D2RTN2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G037100 {ECO:0000313|EMBL:KJB54513.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB54513.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB54513.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB54513.1; -; Genomic_DNA. DR RefSeq; XP_012444798.1; XM_012589344.1. DR GeneID; 105769009; -. DR KEGG; gra:105769009; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 979 1072 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1106 AA; 123565 MW; 1F8F3D1E94FD4D71 CRC64; MKAPPTGFLA NPAEGDRKSI NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICVLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKHSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHENAWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDVKSQL LLGLRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANFS PFTIFYNPRA SPSEFVVPLA KYYKAMYTQV SLGMRFRMMF ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPRRVS IWEIEPVVSP FFICPPPFFR PRFPKQPGMP DDDSDVENAF KRAMPWLGDD FGMRGTPSSI FPGLSLVQWM NMQQSNQFPA AQSGFFPSTV SSNPLHNNLS IDDPSKLLNF QAPVLPAPNM QFNKANPNQV NQLPQAPTTW PQQILQTPLN QHQQQQPQQQ LQQQQPQQPK QQPQPQSHLL HQQQPQPQPS PKQQQHIHQE QRQQPQQQQP LQQQPTLPPQ VINGIVAPNQ ISNQNLHQPA VYSHLQQQQL LTSNSLSTQT TLSAHMTSYP LTSLPQDTRV QQQMEQQPNL MQRQQQQTQL QQSLSQRTQQ QPQILQLSQQ GLSEQLQLQL LQKLQQQQQQ QSAQQLLSAA GSLLQPPMLQ QQQTHQQNQP LQQLPLSQSQ VQPLGGNGFS TSMFVQPQQL SVHQSQSQNK QLMAMRSNSG LIDGDAPPCS TLSSTNNCQV SPSNLINRSH HVPSILMTDP VVEPPSTLAQ ELLSKPDIQI KHEPPTSRGL DQSKYKSSVT DQLEASSSGT SYCLDAGTLQ HNASLAFLEG DVQSHSRNNL PFTANIDGLA PETLLTREYD SQKDLQNMLS NYGGNPRDID TELSTAAISC QSFGVPNIPF KTGCSNDVAI NETGVLNGGL WTNQTQRMRT YTKVQKRGSV GRSIDVTRYK GYDELRHDLA RMFGIEGQLE DPQSSDWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS SAEVQQMSLD GNLGNVSVPN QACSGTENGN AWRGHYDDTS AVSFNR // ID A0A0D2RVM9_GOSRA Unreviewed; 1036 AA. AC A0A0D2RVM9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_012G009000 {ECO:0000313|EMBL:KJB74822.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB74822.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB74822.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB74822.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 924 1008 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1036 AA; 115216 MW; 77FAC4714EF700CC CRC64; MKRDVDAQIL NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLQPVSSFD KEALLRSDLS LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQKPAQE LEARDLHENV WKFRHIYRGK PQRHLLTTGW SLFVSGKRLF AGDSVLFIRD ETQQLLLGIR RANRQPANLS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASLSEF VIPLAKYYKA VYNHQISPGM RFRMMFETEE SGTRRYMGTI TGISDIDPVR WKNSQWHNLQ VGWDESTAGE RRNRVSIWEI EPVTAPFFIC PSPLFRSKRP RQPGMPADEY SDLDNLFKRP MPWLGDDICL KDSDAHPGLS LVQWMNMQQN PLLANSMQPN FMQSLAGSTM QNFDGADLSH QMGLSAPQMP QPNNLQFNAH RLPQKVQQLD QVPKLPSTMN SLGSIIQPQQ LNDMTQQSRQ NLVAQPLPSS QVLQPQALVQ SNNILQQQQT SNPTHQLPLS LPQNLQQHLV GPNHLQNLMH SQLPDPLNQH LQVPDNQVQF QLMQKLQQQQ QLLLAQQSAL QQPGQLAQPQ DQQRQLLDAS QSFSSSVTAS QVLEMPQNIP TLLPQSNVAP QQMPKNNSQA NVWFSQPPLQ SKVQQQQTGM LPEVPGLVGP FQTTATNQFS TAVSSVMMSA AVAAPSVITD DNPSCSTSPS TNCPSVLQPM IDSRVHRSTG LGDDISQSTA TVLNPNAVET MSTKANMVKE QQQKSVKPLL NISKSQNQGS FAPQNCINGA TAHADCLDTS SSTTSVCLSQ SDVHLHQNTP SYNPQTMLLR DTSQDGEVQA YPRNSVSYGN NMDSQIEMSM NSDTLSAKGM MGLGKDFSNH LSSGGVLASY ENPKDTQQEL SSSMVSQSYR VPDMAFNSID PTINHSSFIN RSGWTPPSQF QRLRTYTKVY KRGAVGRSID ITRYSGYDEL KQDLARRFGI EGQLEDRGRV GWKLVYVDHE NDVLLVGDDP WEEFINCVRC IKILSPQEVQ QMSVDGEFGN SVLPNQACSS SGNGNA // ID A0A0D2RVN5_GOSRA Unreviewed; 675 AA. AC A0A0D2RVN5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_004G085400 {ECO:0000313|EMBL:KJB23175.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB23175.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB23175.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001743; KJB23175.1; -; Genomic_DNA. DR RefSeq; XP_012473977.1; XM_012618523.1. DR GeneID; 105790774; -. DR KEGG; gra:105790774; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 576 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 675 AA; 75920 MW; DD27805A81373FB3 CRC64; MDGEGHGSKA KFPFHSTRGE NNDLYTKLWH ACAGPSVYVP RSGDKVLYFP QGHMEQVEAY MSEDGTMEMP IYNLPWKILC RVLHVELKVE PDTDEIFAEI ILLPEAEQDE QRMEHRYYRA SPRENYSRYF SKKLTPSDIK THGGFSIPKR HANDGCLPLL DMSQEIPQQE LLATDLHGHP WYFRHVFRGY PKRNLLTTGW STFVTSKKLA AGDSFIFLRG ENGEFGVGVR RSMTKLLNSP SPSIISAHSV RHGILASAFH AFATRSIFNV YYRPWARSSQ FITPLDQYIK AVQFDYCFGT RCRMRVEGGE SGEQRSLGTI IGTEDLDPIR WQNSKWRCVK VKWDPAASSV LLPERVCPWS IDLTEFTKKK KASTLHHQKR ARPNNASSPE FSNLLMDGML HGTAKNQSQS SSGVLQGQED SDTCVNQSSV LQQSLPHLLP QDPGCASMQQ QMHKQLEIQI PTCDPFYQCS SNTAHFSGRK VPGLCNGLST ISSNRVHDDA RATKNGTSLS RPNGSHRCMV FGVNLFNGSP ELPSPQVLTS SEVQCSTPLT SQSSVSIASK GISSKQCNNC CSVGDRTCTK VLKYGTNLGR SVDLYRFNGY KGLILELDHM FDFNGKLIDG SSGWHITYTN EDGDMMLIGD PYPWQKFQHE VRRMVIRPKE EINRLNPSSP SSASY // ID A0A0D2RXK9_GOSRA Unreviewed; 679 AA. AC A0A0D2RXK9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G166400 {ECO:0000313|EMBL:KJB36594.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB36594.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB36594.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB36594.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 679 AA; 74802 MW; F520D472A1340FAE CRC64; MITFMESKEK PKEMEKCLDS QLWHACAGGM VQMPSVNTKV FYFPQGHSEH ACGTVDFRNC PRIQAYILCR VAAVKFMADP ETDEVFAKIR LIPVNTNDPD FEDDGIGSIN GNETQEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCIGIR RAKRGIGGGP ESSTGWNATA GNCMIPYGGF SAFLREDEGK LMRNGSSNGV SSNGNLMGKR KVRTEQVIEA ATLASNGQQF EVVYYPRAST PEFCVKASLV KAALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD PLHWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHS DFHLDGQLPM PTFSGNLLGA SNPFGCLPNT APAGMQGARH AHYGLSLSDL HLNKLQSGLF PASFPPLDYA PVPNRTSNGG PNIRKPSMSE NVSCVLTMSH PSQNTKKADG AKTPQLVLFG RPILTEQQIS LSCSGDTISP VLTGNSSSEY LDKAANFSDG SGSALHQQGL PERASCEGLP WYKNSRQETE PNLETGHCKV FMESEDVGRT LDLSLLGSYD ELQRKLADMF GIENSETLSH LLYRDATGAV KQIGEEPFR // ID A0A0D2RYA1_GOSRA Unreviewed; 695 AA. AC A0A0D2RYA1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G107800 {ECO:0000313|EMBL:KJB56148.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB56148.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB56148.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB56148.1; -; Genomic_DNA. DR RefSeq; XP_012443596.1; XM_012588142.1. DR GeneID; 105768286; -. DR KEGG; gra:105768286; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 77079 MW; 32EEE9A7FF1FDB4F CRC64; MRKEAEKSLD PQLWHACAGS MVQIPPVNSK VFYFPQGHAE HSLSPVDFSS SPPIPALVLC RVASVKFLAD AETDEVYAKI MLVPLPNTEP DLENVAVLGG GSDNVEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYTADPPVQT VIARDVHGEI WKFRHIYRGT PRRHLLTTGW SSFVNHKKLV AGDSIVFLRA ENGELCVGIR RAKRGNDTGA ESGLGNGNYV SPYGGFSGFL KEDESKITRK GNPRGKGKVR AEAVVEAVGL AANGQPFEIV YYPRASTPEF CVKASVVRAA MRVPWCSLMR FKMAFETEDC SRISWFMGTV SSVHIADPLR WPNSPWRLLQ VTWDEPDLLQ NVERVSPWLV ELVPNMLPVH LSPFSTVTPR KKLRLPEHLD FPLVEQFPMP SFSGHPLRSS NPLCCLSDNA PAGIQGARHA QVRLSSSDPH LNKLKSGLFP SGFQLFDPQA RVPNGISMTK HTDSNDDNLS CLLTVGNSSP KKKSENGKRH QFLLFGQPIL TEQQLSRSCS TGVKTALENE DKRKDYSNGS ESALENQLSP EKSFTTRLLW QQDYQAPEPG SATGHCKVFL ESEDVGRTLD LTVLGSYEDL YMRLANMFGR ERSEMLGHVL YRDATGAVKQ TGDEPFSTFM KTVKRLNIRM DSRNDTDGRS WLTGIRTAKN RLEGPNKRGP LSIFA // ID A0A0D2RYH6_GOSRA Unreviewed; 398 AA. AC A0A0D2RYH6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB24105.1}; GN ORFNames=B456_004G128200 {ECO:0000313|EMBL:KJB24105.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB24105.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB24105.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001743; KJB24105.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 398 AA; 44720 MW; A963FA9B30B9FBD1 CRC64; MDFGSSGREG LCEEEQMGKG KLPFTYSPPS PSSSSSQHKS QLPPLRNPGW EEQPRPIYDN RHHRMTSEWL SYRRVDSDST LELRTSASAA DIEKEHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRGAGEV GKDRFFIDSK RKPDAPTLVS FHPHQHYFSL GRSIPWNPLL MRPPPTGRDH LYLSPVNPIN RRNSYYGGYP TGSNVVNPGD TVGSLFYLRS AVGSGAPQMG MTQRQQQGGV VEPIVFDSVP VVQSKAAPKR MRLFGVNMEC PMPESDECEM LTTSTLAHAT MAPQHPDQPP SSSQHPLQLR LYNGTPLPPT DFLNANKGKA SLSFDLDT // ID A0A0D2S068_GOSRA Unreviewed; 283 AA. AC A0A0D2S068; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB35156.1}; GN ORFNames=B456_006G102500 {ECO:0000313|EMBL:KJB35156.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB35156.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB35156.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB35156.1; -; Genomic_DNA. DR RefSeq; XP_012484963.1; XM_012629509.1. DR RefSeq; XP_012484964.1; XM_012629510.1. DR RefSeq; XP_012484965.1; XM_012629511.1. DR RefSeq; XP_012484966.1; XM_012629512.1. DR GeneID; 105799119; -. DR KEGG; gra:105799119; -. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32242 MW; 3D5EACAFF3BB2D7B CRC64; MVKKMSNFEA KNFYKVYLTT HSLRSMLIPA TAVACPLTPA TATLRNCNGQ CWQVDLVKCD NKMYFRKGWR RFIDENSVVD GNFLIFNYVG GCVFDVKIYE FDACEKSIPY VVSEESESES ESEDDGSDSD DAMNDEGADS MEVEDEEIHP EDYVQHLNPY FVAKTTKSSQ RMNELYIPTG IAKDFGVSLE DGEKITLVGL YNRKSIGKVV KWKDQRTCIK GWRSVLNRNK VNLERDTCIC EFLLENGQQA EMGVQTKSIQ VHVISRRKPS ESGIKASKKQ KQK // ID A0A0D2S1L9_GOSRA Unreviewed; 755 AA. AC A0A0D2S1L9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G152700 {ECO:0000313|EMBL:KJB57193.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57193.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57193.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57193.1; -; Genomic_DNA. DR EMBL; CM001748; KJB57196.1; -; Genomic_DNA. DR EMBL; CM001748; KJB57197.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 687 755 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 755 AA; 83516 MW; C49EECE8A64605D2 CRC64; MHADVETDEV YAQMTLQPLN PQEQKEAYLP AELGTSSRQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQQPP AQELIARDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHLGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLTKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPAGLPS FHGIKDDGLG MNSPLMWLQG DAGRGMPSLN FPGIGVTPWM QPRLDAASML GLQTDIHQAM AAAALQDMRA VDPSKSATTT LLQFQQPQNL SCRPAALMQS QMLQQSQPQA FLQGVEDNQH QSQTQAQTQP PLVQQQLQQQ NSFNNHQHQQ QLQHPLSQQH QQLVDHQHIS TGVSAMSQYT PASQSRSSPF QAIPSLCQQQ SFSDSNGHTM TSPIVSPLHG LLGSFPQDES SGLLNLPRSN PVITSAAWPS KRAAVEVLSS GSPQCVLPQV EQLGPTQTNI SHNSISLPPF PGRECSIDQA GGTDPQSHLL FGVNIEPSSL LLQNGMSSLR GVGSESDSTT IPFSSNYAST AGTDFSVNPA MTPSSCIEEL GFLQSPENVG QENPQTRTFV KVYKSGSFGR SLDISKFSSY NELRSELARM FGLEGQLEDP LRSGWQLVFV DRENDVLLLG DDPWP // ID A0A0D2S1P3_GOSRA Unreviewed; 781 AA. AC A0A0D2S1P3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G120400 {ECO:0000313|EMBL:KJB35561.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB35561.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB35561.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB35561.1; -; Genomic_DNA. DR RefSeq; XP_012485241.1; XM_012629787.1. DR GeneID; 105799306; -. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 656 738 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 781 AA; 87469 MW; 13D5F2EF58C7574E CRC64; MEIDLNHALS EVEKTAVCNG GCDKLNCVCS SSSSNLASPP CTSSIYLELW HACAGPLTSL PKKGNLVVYF PQGHLEQLAS ASPFSPLEIS TFDLPPHIFC KVVNVQLLAN KENDEVYTQL TLLPQPELRE PNLESKQLDE LGVDEGDDGS PKRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQTRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLVAG DAVLFLRGED GELRLGIRRA VRPRNCLPES VIAKQNSYLN VLSPVANALS MKSMFHVFYS PRASHAEFVI PFRKYFKSIA NSVCIGTRFK MRFDMDDSPE RRFSGVVMGM GDSDPYKWPN SRWRCLMVRW DEDNMIDRHE RVSPWEIDPS ASLPPFSIQS SPRLKKLRTG GSRFLDFEEP LRSSKVLQGQ ENVGFVSPLY GRDTVSRPLD FEMQSPAHHQ SLASTGIEKS NISEFMRVRS TTYTGFADSN RFPKVLQGQE ICQLRSLTQK ADLNPGVWAK TNLGCNSFNM HQTLRTNCYP LASEGLRNMY FPYGEFLKTV QEPTMSSYAC PLRRGNVPFN ASSIRTGVGV IVDGFRKPNQ QNEHKPLENI PSPASENNLR NQQDDSFKRN VAGCKLFGFP LNVESPTPNS QNSGKRSCTK VHKQGSLVGR AIDLSRLYGY DDLMIELEHL FGMEGVLSDP DKGWRVLYTD GENDVMVVGD DPWHEFCEVV SKIHVYTQEE VEKMTIGTGS DDTQSCLEQA AVIMEASKSS SVGQPDSSSP M // ID A0A0D2S1P8_GOSRA Unreviewed; 677 AA. AC A0A0D2S1P8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G120400 {ECO:0000313|EMBL:KJB35566.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB35566.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB35566.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB35566.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 677 AA; 75839 MW; 371D3EB2D08364B9 CRC64; MEIDLNHALS EVEKTAVCNG GCDKLNCVCS SSSSNLASPP CTSSIYLELW HACAGPLTSL PKKGNLVVYF PQGHLEQLAS ASPFSPLEIS TFDLPPHIFC KVVNVQLLAN KENDEVYTQL TLLPQPELRE PNLESKQLDE LGVDEGDDGS PKRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQTRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLVAG DAVLFLRGED GELRLGIRRA VRPRNCLPES VIAKQNSYLN VLSPVANALS MKSMFHVFYS PRASHAEFVI PFRKYFKSIA NSVCIGTRFK MRFDMDDSPE RRFSGVVMGM GDSDPYKWPN SRWRCLMVRW DEDNMIDRHE RVSPWEIDPS ASLPPFSIQS SPRLKKLRTG PQAATPDTLI AGGSRFLDFE EPLRSSKVLQ GQENVGFVSP LYGRDTVSRP LDFEMQSPAH HQSLASTGIE KSNISEFMRV RSTTYTGFAD SNRFPKVLQG QEICQLRSLT QKADLNPGVW AKTNLGCNSF NMHQTLRTNC YPLASEGLRN MYFPYGEFLK TVQEPTMSSY ACPLRRGNVP FNASSIRTGV GVIVDGFRKP NQQNEHKPLE NIPSPASENN LRNQQDDSFK RNVAGCKLFG FPLNVESPTP NSQNSGSQAR QLGRKSY // ID A0A0D2S2J8_GOSRA Unreviewed; 694 AA. AC A0A0D2S2J8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G166100 {ECO:0000313|EMBL:KJB57483.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57483.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57483.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57483.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 75404 MW; 5214B71FD0BBB65D CRC64; MGGLIDLNTT EDEETPSSGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR GSVVVYFPQG HLQQVSDFSG VAPAHDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE KLKEGNIEVD GEEDAEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGENGE LRLGIRRAAH IKNGTSFHSL CTQQLNRSNF ADVVHAISMK SVFSIYYNPR YTGVVTGISE MDPVRWSGSK WRCLLVRWDD IDANRHNRVS PWEIEPSSSI SSSNSLLSPG SKRNRVGLPS GKPEFMVPEG IGASDFGESL RFQKVLQGQE ILGFNTHHDG ANSQIMHRSE ISRRFPCSNG SGIAAIRNIG RDTLVNPDIS YKGVGFEESF RFQKVLQGQE TSVSPPCRRG PTADDTRESD SPGAPDVGQL SGTRSGWSSL MQSYNTHSHI GPSAQVSSPS SVLKFQHASN PFANVNPIHN LNSQEKERRV HKSSSFHAPE TYGDRIPSST GGHGSRRRHL GSLDSFGPSA DTVQLGDSQP LSAQPTFRTS QELASSCKSS CRLFGFSLTE GGHDAAKEDN MVQATSSLGA GAFLPRIGEQ FNTQPPAVTN TVGSSYTKVS NLYAVRDIVY DIAL // ID A0A0D2S3H7_GOSRA Unreviewed; 365 AA. AC A0A0D2S3H7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77682.1}; GN ORFNames=B456_012G151000 {ECO:0000313|EMBL:KJB77682.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77682.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77682.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77682.1; -; Genomic_DNA. DR RefSeq; XP_012458783.1; XM_012603329.1. DR GeneID; 105779535; -. DR KEGG; gra:105779535; -. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 42078 MW; 83BCB1EF1C65CE2D CRC64; MSQPVGPSLP LNNSSCIFYK LIVASILQDK KLRIPNKFVK KFGDELSSVA TLTVPGGRQW LVELREEDKR IWLDNGWNTF VEYYSICIGY FVVFKYEGNS HFGVHVYNLK SSEINYLSNN SREPGDFAEI TGSSSYFLVD KDVDESLDHE KKKYKISTGL HQENELRDLR ATFQSTLDKG IQFNGVELMS IGDEGGPCFS NETLRYTIKQ EVEPSMDEQE PFRKFKVKEE LPTLDSPRVL RRRRDVTTEE KQGAFHAASM FKPDNPFCRI ILRPSYVYKG VLLHLPRCFA RRYLNGVDGV IMLQIPEGKK WPVQCVYCND NLKFSKGWAE FVLDNNLDEG DVCIFELINT KEIVLKVTIF RALRD // ID A0A0D2S3S0_GOSRA Unreviewed; 280 AA. AC A0A0D2S3S0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB36316.1}; GN ORFNames=B456_006G152400 {ECO:0000313|EMBL:KJB36316.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB36316.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB36316.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB36316.1; -; Genomic_DNA. DR RefSeq; XP_012485771.1; XM_012630317.1. DR GeneID; 105799647; -. DR KEGG; gra:105799647; -. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 31375 MW; D02A5494F309D75C CRC64; MFFSSNHPSL SFNFNQHEDH SESEINPNQI HPDHGMEPMF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLAA DSVDKGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSK YVKEKQLDAG DIILFLRHRS DGDRFFIGCR RRGAPSAPAD AGNTLMGNST SCGGGGDTRG LYHGHPYLGH IQGYAANLPY RPGCLHAGSI VENEGIAAGN PRRLVRLFGV NLECQLDGSE PSTPENSSSV SVSSQQGPTT HQFYNSQSYT SNYMDITFSR DMNQMRNHQE // ID A0A0D2S465_GOSRA Unreviewed; 295 AA. AC A0A0D2S465; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77927.1}; GN ORFNames=B456_012G167400 {ECO:0000313|EMBL:KJB77927.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77927.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77927.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77927.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33985 MW; 337B95C34EC9B7CE CRC64; MAIEKLQFIK RLTKTDIGKR LSVPSKKKRC FLDFDGRHQV DVKVKDDNGK DWLFGCSKRR GRDNYPKPVL SKGWLQFVRC WKLAVGDTVI VNWVMEKDGK GNYRIKVIRT GVLPLVQNRD ADRAIASNRS PERTITYDRT EELRNLPKFI DFFELDSKQR EMEHPSNLAL HNINVDEVLI TSSAAPYSKL HDADRVMAVA AYTDVEQEAT ITFAGTELTV SYEQTEGLHN QPGLMFEFIS QKPDETDRKS RAIDCSDLGS QEQREMEHPS ILALHNINMV KMRVTSSRTP YIKFF // ID A0A0D2S482_GOSRA Unreviewed; 276 AA. AC A0A0D2S482; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77937.1}; GN ORFNames=B456_012G168700 {ECO:0000313|EMBL:KJB77937.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77937.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77937.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77937.1; -; Genomic_DNA. DR RefSeq; XP_012458573.1; XM_012603119.1. DR GeneID; 105779372; -. DR KEGG; gra:105779372; -. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 29725 MW; 96A023BFAA651CB5 CRC64; MASQPTKMFS KKLKTTDINK RLTIPGKILP SLPAFNGGHA VMIQLNYGTK IWPIYCTVRK NGYKKPVLSV GWRKFVADNK LKTGDIITMY KDFEDEDGGS HFRVEVEKPP AASKQDRSHG TLPSSSVLAF NDHEVDGTNS GNEADRIPNK ALDDGAINLE GGIPIMELPD VATDTLVDGH VIAKPSVTIF GAIMTDEMKC LGITKGTDMA EPSFLSPCMA KPEREIDFLG IAEGGDAIAY GSGPSDAAGE ACCNFITHHR SVTLDLVLSQ PNPYAG // ID A0A0D2S566_GOSRA Unreviewed; 271 AA. AC A0A0D2S566; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58373.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58373.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58373.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58373.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58372.1; -; Genomic_DNA. DR EMBL; CM001748; KJB58373.1; -; Genomic_DNA. DR EMBL; CM001748; KJB58375.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 155 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30460 MW; 94DF872758C04D03 CRC64; MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEYDV CVFEPSNIGG KPIILDVIII RVLDSAVQAP VPLTITHPAS C // ID A0A0D2S570_GOSRA Unreviewed; 288 AA. AC A0A0D2S570; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58378.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58378.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58378.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58378.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58378.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 288 AA; 32856 MW; 0DC089D79C41A9CF CRC64; MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM VNFIPELD // ID A0A0D2S6W7_GOSRA Unreviewed; 862 AA. AC A0A0D2S6W7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G044900 {ECO:0000313|EMBL:KJB40059.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB40059.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB40059.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB40059.1; -; Genomic_DNA. DR RefSeq; XP_012489050.1; XM_012633596.1. DR GeneID; 105802132; -. DR KEGG; gra:105802132; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 737 821 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 862 AA; 95964 MW; D1AFDE9E75A3A1EB CRC64; MTTSEISIKG NCVNGRGDGF SSGYTEPRDT RNAMEGQNGH SARTAAVRET VDHERALYTE LWHACAGPLV TVPRELERVF YFPQGHIEQV EASTHQVSEQ QMPVYDLPPK ILCRVINVQL KAEPDTDEVF AQVTLLPEHN QDENMVDKEP PIHEPPRFQV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSLQPPT QELVSKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRALRQQGN VPSSVISSHS MHLGVLATAW HAYTTRTIFT VYYKPRTSPA EFIVPFNQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGIEDADPK RWQGSKWRCL KVRWDETSTI PRPERVSPWK IEHALSPPAL NPLPMPRPKR PRTNAVSSSP DSSVLSREGS SKVTVDPLPA SSFSRVLQGQ EFSTLRGTFA ESNDSDTADR SVMWPPSIDD EKIDVAHGER KFGPENWMPS RRHEPTYTDL LSGFGSNADT SRGYYPSFVD QTSVAGNSGK KQLLGQEGKL GSWSLLPSGL SLKLSDSSTD PPLQGSDVPY QARGNGRFSG FGDYPILEGH RIECSRGNWL MPPPTTSCYD NSIHSRDLMP KTSLAQEHKN GKSREGNCKL FGIPLISTSS ASEPAVSHIS AFAKPVGHMQ AALHQFHALE SDKRSENSNA SQMAEDVSAF NEQEKIVKLG QPHAREFQSK LSTASTRSCT KVLMQGTALG RSVDLTKFNN YDELIAELDQ LFEFGGELMA PQKNWLVVYT DDEGDMMLVG DDPWQEFCAM VRKIGIYTRE EVQKMKPGSL GSKFEDIAIP TEGTVAKEVN CPSASSAKNC SG // ID A0A0D2S7X3_GOSRA Unreviewed; 208 AA. AC A0A0D2S7X3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB79207.1}; GN ORFNames=B456_013G039800 {ECO:0000313|EMBL:KJB79207.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB79207.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB79207.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB79207.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 208 AA; 23617 MW; 058431597A8E6A39 CRC64; MFGGSKLSNC INWGGDVNRQ NPKAVNNQPI RGSGAMKPEP KKRGRKRKFD PNVQDSSAGR EDDADMRLRC YESASARKRT VTAEERERAI NAAKAFEPIN PFCRVVLRPS YLYRGCIMYL PSCFAEKHLS GVSDSIKLQL PDGRQWSVRC RYKGGKAKFS RGWYEFTLEN NLGEGDVCVF ELLRSREIVL KVTVFRVMES GGLMHRSQ // ID A0A0D2S814_GOSRA Unreviewed; 151 AA. AC A0A0D2S814; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB79247.1}; GN ORFNames=B456_013G039500 {ECO:0000313|EMBL:KJB79247.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB79247.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB79247.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB79247.1; -; Genomic_DNA. DR RefSeq; XP_012461286.1; XM_012605832.1. DR GeneID; 105781297; -. DR KEGG; gra:105781297; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 106 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 151 AA; 17508 MW; 6A44887A6CA18A0C CRC64; MGVPPLYSET NEIFSKDLSE TDVGVRLSFP MKALKVFQFL EGENKMEFEA ADGIGKRWIF GLSKRKARHP KPVLSSGWLA YVRAKGLQIK DRFVLYGDLD NLSTKKRFRV RAQRKVRRPI KLFGKEIHVE EVWVDVEELE GLKREVSRSI L // ID A0A0D2SBB1_GOSRA Unreviewed; 598 AA. AC A0A0D2SBB1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41544.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41544.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41544.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41544.1; -; Genomic_DNA. DR EMBL; CM001746; KJB41545.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 598 AA; 66500 MW; 5FC9372DE51C1CBA CRC64; MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE APKRKVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSTMPSS VISSQSMHLG VLATAAHAVT THTLFVVYYK PRTSQFIIGV NKYLEAINNG FSVGMRFKMR FEGEDSPERR FTGTIVGVGD ISPHWSESKW RSLKIQWDEP AAIQRPERVS PWEIEPFVAS ASTNAQPTIM CKRPRPVDIP ASEITTSSAG SAFWCRESIQ SHELTPVGST LEVQSSENQV MWPMRQKEAD NCLINGNGGY KSRTPPENAW PPSPLVNVSL NLFPDSMENN YKTGALQTAL TGYAKGLMHD QVEKRKTETF TGCRLFGFNL TDSTSVAAPP DKEQTSTSID YNGVRGHVPA AFHVEQKPET SKEQKQVASE TSTQEMQAKQ GSATSMRSRT KVNFTVSASL DCIHYSSS // ID A0A0D2SBB3_GOSRA Unreviewed; 721 AA. AC A0A0D2SBB3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41549.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41549.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41549.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41549.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 577 669 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 721 AA; 80843 MW; C330321024EB5644 CRC64; MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE APKRKVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSTMPSS VISSQSMHLG VLATAAHAVT THTLFVVYYK PRTSQFIIGV NKYLEAINNG FSVGMRFKMR FEGEDSPERR FTGTIVGVGD ISPHWSESKW RSLKIQWDEP AAIQRPERVS PWEIEPFVAS ASTNAQPTIM CKRPRPVDIP ASEITTSSAG SAFWCRESIQ SHELTPVGST LEVQSSENQV MWPMRQKEAD NCLINGNGGY KSRTPPENAW PPSPLVNVSL NLFPDSMENN YKTGALQTAL TGYAKGLMHD QVEKRKTETF TGCRLFGFNL TDSTSVAAPP DKEQTSTSID YNGVRGHVPA AFHVEQKPET SKEQKQVASE TSTQEMQAKQ GSATSMRSRT KVHMQGIAVG RAIDLTALKG YNDLINELEK MFEIKGELCR SGQWSIVFTD DEGDMMLVGD DPWVEFCKMV RKIFIYSSEE VKKISTRCKF PASSMECEGT VVSLDSEHRK RKWQELKLGI LIPKFHGIIA SFRRRKWLGE N // ID A0A0D2SCX5_GOSRA Unreviewed; 696 AA. AC A0A0D2SCX5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G026900 {ECO:0000313|EMBL:KJB39716.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB39716.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB39716.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB39716.1; -; Genomic_DNA. DR RefSeq; XP_012488760.1; XM_012633306.1. DR GeneID; 105801943; -. DR KEGG; gra:105801943; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 584 665 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 77537 MW; 330F48A1337EBF18 CRC64; MMANRVESFS QTNNVSSEGN GCDDLYMELW KLCAGPLVEV PRAEQRVYYF PQGHMEQLEA STNQTLNQRI PLFNLPSKIL CRVVHIQLLA EKETDEVYAQ VTLLPEPSQP EPTTPDLCPP ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATDCLPKLD MNDATPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR VVRQHSIMPS SVISSQSMHV GVLATASHAV STQTLFVVYY KPRTSQFIIG LNKYLEALSN KFAVGMRFKM KFEGEDSPER RFSGTIVGVE DFSPLWKDSK WRSLKVQWDE PASIPRPDRV SPWEIEPFAA PIPPSLTQPV AAKNKRPRPP AEIPAPDLSS TTSAPYSGVT HCHDLTPQNI AAEAKGNENP VIGHHMWTEM SSGCSSVAKA LNKGSWLSSP GTCVPHHLFP DAREDKTRFS AWPVPSGFSN PQLNEDSTFD STEKAKRSET AASCRLFGID LINHSTSSTP LERTPAQLST MIMGTEVPGP STLSSTYSDQ KSEISKDSKE KKLEQLQLSA KENQSMQSCS SFTRSRTKVQ MQGIAVGRAV DLAMFEGYGQ LIDELEEMFD IKGELRPRNK WEIVYTDDEG DMMLVGDDPW PEFCNMVRRI FICSSQDVKK LKTGSKLPLA SIEGEGTVIS SDSSEN // ID A0A0D2SE23_GOSRA Unreviewed; 805 AA. AC A0A0D2SE23; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G044900 {ECO:0000313|EMBL:KJB40061.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB40061.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB40061.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB40061.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 737 805 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 805 AA; 89887 MW; 62EB25CD4BCEB4F7 CRC64; MTTSEISIKG NCVNGRGDGF SSGYTEPRDT RNAMEGQNGH SARTAAVRET VDHERALYTE LWHACAGPLV TVPRELERVF YFPQGHIEQV EASTHQVSEQ QMPVYDLPPK ILCRVINVQL KAEPDTDEVF AQVTLLPEHN QDENMVDKEP PIHEPPRFQV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSLQPPT QELVSKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRALRQQGN VPSSVISSHS MHLGVLATAW HAYTTRTIFT VYYKPRTSPA EFIVPFNQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGIEDADPK RWQGSKWRCL KVRWDETSTI PRPERVSPWK IEHALSPPAL NPLPMPRPKR PRTNAVSSSP DSSVLSREGS SKVTVDPLPA SSFSRVLQGQ EFSTLRGTFA ESNDSDTADR SVMWPPSIDD EKIDVAHGER KFGPENWMPS RRHEPTYTDL LSGFGSNADT SRGYYPSFVD QTSVAGNSGK KQLLGQEGKL GSWSLLPSGL SLKLSDSSTD PPLQGSDVPY QARGNGRFSG FGDYPILEGH RIECSRGNWL MPPPTTSCYD NSIHSRDLMP KTSLAQEHKN GKSREGNCKL FGIPLISTSS ASEPAVSHIS AFAKPVGHMQ AALHQFHALE SDKRSENSNA SQMAEDVSAF NEQEKIVKLG QPHAREFQSK LSTASTRSCT KVLMQGTALG RSVDLTKFNN YDELIAELDQ LFEFGGELMA PQKNWLVVYT DDEGDMMLVG DDPWQ // ID A0A0D2SEA9_GOSRA Unreviewed; 330 AA. AC A0A0D2SEA9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB29525.1}; GN ORFNames=B456_005G105400 {ECO:0000313|EMBL:KJB29525.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB29525.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB29525.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB29525.1; -; Genomic_DNA. DR EMBL; CM001744; KJB29528.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 223 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 223 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 37654 MW; D6E6CFAE7794419E CRC64; MIGEFEEKKV AQSFNSCFPF FVRIMKRFNV SGSYTLNIPY QFAMEHLPNC KTELVLQNLK GACWTVNSVP TTRVHTSHTL CGGWLSFVRS NEIKAGDICI FELVHKFEFR VHILRVGQED LDRQSRKAVL DRSDSTLLKK LVKNTSKVHS KLKKVQICDN KGSKVLDKWK YGNAAKKSAS FVLCSLSRSG TEKQEAAISG LRMMMTVDEE KAARSFASRF PSFVRIMRKF NISGSYTLKI PYKFSKEHLP YCKTQVVLRN LQGKCWTVNS LPDSKGRAVH TFCGGWMAFV RDNEIKIGDI CIFELVNNYE MRVHISGPGR KGLDRQHTSL // ID A0A0D2SFZ1_GOSRA Unreviewed; 296 AA. AC A0A0D2SFZ1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB62053.1}; GN ORFNames=B456_009G399000 {ECO:0000313|EMBL:KJB62053.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB62053.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB62053.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB62053.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 296 AA; 33169 MW; 6F13E522000B7EA5 CRC64; MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PSMFLSSIHA PRHFNLNHDD DEELDDQTST LNTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGDSSDKG LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF IGWRRRGAAV VVAPAATDGG NAMMENDSGG GGGGNGGWNN RGLYQRYPHL GHIQGDLEAN VPYQPDCLHA VFFICHCRKH CSKPSYSSGE PKEAGAAIWS EPRMPPARRV STIHAC // ID A0A0D2SHA0_GOSRA Unreviewed; 493 AA. AC A0A0D2SHA0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43599.1}; GN ORFNames=B456_007G209200 {ECO:0000313|EMBL:KJB43599.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43599.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43599.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43599.1; -; Genomic_DNA. DR RefSeq; XP_012491740.1; XM_012636286.1. DR GeneID; 105803868; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 46 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 113 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 396 492 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 46 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 113 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 396 492 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 493 AA; 55932 MW; 8E25519638F36E42 CRC64; MKLDGKLWVQ NGWRKFTEHY SLELGHFLVF RYQRNCRFHV LIFDRSASEI HYPYANNIST DMTKKPVLQC PRPPKIMRAS NNGFSATKGN EKSKALERAS SAIKSGNPFF LVFMQPTYVG LHSKVSCLSI PKEFSRKYLM DQGDVILCDS SGNTWSAQYR ATLGMNGQPY VKLLNGWDAF VRDNNLQVGD VCAFELIDCI DISFQVVIYS SKKADFHGSP AQMEAGMTLT RSECLEPVKA RETAFHREMK VREKALQRAL AFTSENPFFV VVLRPSYVQS HALCISNDFT RKHFKTTLTN IGIALRLSNG KSWPAEYHQR SIGNPNARIC NGWRAFVNDN KLKVGDVCVF ELVSDTQISV KVIIFQAIAD EDSHPSQGAS EEALGLTSQS AKAPLIFRRV VLPLHLKEDC VDIPFRFVEQ YFEPNVQKLI LQVADRTWPV EITSNPRIRI AKLTSGWIKF ARENSLREGD ICVYELDTVD NNLLKVSISK YAS // ID A0A0D2SHJ7_GOSRA Unreviewed; 402 AA. AC A0A0D2SHJ7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43694.1}; GN ORFNames=B456_007G212100 {ECO:0000313|EMBL:KJB43694.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43694.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43694.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43694.1; -; Genomic_DNA. DR RefSeq; XP_012491793.1; XM_012636339.1. DR GeneID; 105803906; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 345 372 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 402 AA; 45491 MW; 77C091CD5158CCCB CRC64; MKNKDVGDGR CIAEIKSPAM ICAEEIQSNL EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTTI TLEDESGNQF HVKYYADKTG LSAGWRQFCS AHNLLEGDVL VFQLVEPTKF KIYIIRANDL NELDGALGLL NLDAYTKQSD ADDAETGPTV SKSTKRKRPK PLPLASVRKK NKRSGLQILS CNVGQPAEQS ENDSEEVGSE VLEGFKRTEY AIQFKDITSF ENILVDGLVI DPELSEDIRS KYYQLCCSQN AFLHENIIQG ISFKFKVGII SETVNIADAI RTCKLTTSRD EFDSWDRTLK AFELLGMNVG FLRTRLHRLV NLAFESEGAA ETRRYFEAKA ERDQTENEIR NLEAKLTELK DASKTFGFEM ESLQSKAETN EFRFEKEVKA PW // ID A0A0D2SHZ6_GOSRA Unreviewed; 588 AA. AC A0A0D2SHZ6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41546.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41546.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41546.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41546.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 588 AA; 65339 MW; EB982B4EA3C7786F CRC64; MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE APKRKVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR FKHIFRGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSTMPSS VISSQSMHLG VLATAAHAVT THTLFVVYYK PRTSQFIIGV NKYLEAINNG FSVGMRFKMR FEGEDSPERR FTGTIVGVGD ISPHWSESKW RSLKIQWDEP AAIQRPERVS PWEIEPFVAS ASTNAQPTIM CKRPRPVDIP ASEITTSSAG SAFWCRESIQ SHELTPVGST LEVQSSENQV MWPMRQKEAD NCLINGNGGY KSRTPPENAW PPSPLVNVSL NLFPDSMENN YKTGALQTAL TGYAKGLMHD QVEKRKTETF TGCRLFGFNL TDSTSVAAPP DKEQTSTSID YNGVRGHVPA AFHVEQKPET SKEQKQVASE TSTQEMQAKQ GSATSMRSRT KVNFTVSASL DCIHYSSS // ID A0A0D2SI00_GOSRA Unreviewed; 439 AA. AC A0A0D2SI00; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41551.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41551.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41551.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41551.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 439 AA; 48870 MW; 8DC5369AC08CAEE7 CRC64; MNLATPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGVRR LARQQSTMPS SVISSQSMHL GVLATAAHAV TTHTLFVVYY KPRTSQFIIG VNKYLEAINN GFSVGMRFKM RFEGEDSPER RFTGTIVGVG DISPHWSESK WRSLKIQWDE PAAIQRPERV SPWEIEPFVA SASTNAQPTI MCKRPRPVDI PASEITTSSA GSAFWCRESI QSHELTPVGS TLEVQSSENQ VMWPMRQKEA DNCLINGNGG YKSRTPPENA WPPSPLVNVS LNLFPDSMEN NYKTGALQTA LTGYAKGLMH DQVEKRKTET FTGCRLFGFN LTDSTSVAAP PDKEQTSTSI DYNGVRGHVP AAFHVEQKPE TSKEQKQVAS ETSTQEMQAK QGSATSMRSR TKVNFTVSAS LDCIHYSSS // ID A0A0D2SKR0_GOSRA Unreviewed; 661 AA. AC A0A0D2SKR0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_013G267100 {ECO:0000313|EMBL:KJB83842.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83842.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83842.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83842.1; -; Genomic_DNA. DR RefSeq; XP_012464606.1; XM_012609152.1. DR GeneID; 105783599; -. DR KEGG; gra:105783599; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 629 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 72883 MW; 9ACEDF435A73CA25 CRC64; MELEKSLDPN LWHACAGSMV QIPPINSKVY YFPQGHAEHS LNSVDFPFPR QIPPLVLCRV DSVKFMADGE TDEVYAKIML TPLQNNEPDV GDDDGVSNGG CNNIEKKAAS FAKTLTQSDA NNGGGFSVPR YCAETIFPAL DYSADPPVQT VVAVDVHGQL WKFRHIYRGT PRRHLLTTGW SAFVNRKKLV AGDSVVFLRA ENGGIRVGIR RAKLGIGDGD CYGSLGFCGN SKGNGKVKPE EVLEAAKAAS GGRKPFEVAY YPRTSGPEFC VKASAVNTAM KIPWCCGMRF KMAFETEDSS RISWFVGTIS SVQVADPVRW PDSPWRLLEV TWDEPDLLQN VNRVNPWSVE LASNLPAIHL SPFLRPMKKL RLPQHLDGLL VPSFPSKPLI PSSPLYRLSD NAPVGIQGAR QVQFGLPLSD LHLKNNPHSG LCLSGLQRFD LHDRIPDTFT NSRNNLSCFL TMGNSNKSKN PKKCRFLLFG QPILTEQQLS QSSSSEAVSE VVSGNSCKTK DSSDGSGSVI GNQFSPEKSS TAQFLWDRDN RAIEPCMDTG HCKVFMESED VGRTLDLSVL DSYEDLYRRL ANMFGIDRSK MSEHVLYRDA TGAIKRTGDE PFSAFTKIAK RLTIRMDSSN NTIERSRLTG TRTAENGFRG SNKTGPLSIV A // ID A0A0D2SL43_GOSRA Unreviewed; 391 AA. AC A0A0D2SL43; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83967.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83967.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83967.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83967.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83967.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 287 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 287 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44591 MW; 3A8CB886A06231CC CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL NDSREPGHDK HLKDVEDGAF AQILRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDEYKSL GKFIVKEELP AMNSPRSDHK KRRDATAEGK QIALRAAAMF KPDNPFCRVI LRPSYVYKGI FLHIPRCFAL RYLNGVDGIV TLQVSEGKKW PVRCIYGQSS WKFSKGWAEF VLDNNLDEGD VCVFELISTK EIVLKVTIFR VLEDGVAVNQ L // ID A0A0D2SL48_GOSRA Unreviewed; 313 AA. AC A0A0D2SL48; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83972.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83972.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83972.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83972.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83972.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 209 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 209 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 35734 MW; A09886627D6517BB CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL VELRKENKRV WLDCGWTVFV EYYSICSDHD RKKRKNSTFL DQKNNVDDLR ATVQSTRDKG IQFNGVELTS AADEGGLNFL NGTQKNTKEI KQEIEPDEYK SLGKFIVKEE LPAMNSPRSD HKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK GIFLHIPRCF ALRYLNGVDG IVTLQVSEGK KWPVRCIYGQ SSWKFSKGWA EFVLDNNLDE GDVCVFELIS TKEIVLKVTI FRVLEDGVAV NQL // ID A0A0D2SMJ6_GOSRA Unreviewed; 391 AA. AC A0A0D2SMJ6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB32390.1}; GN ORFNames=B456_005G238700 {ECO:0000313|EMBL:KJB32390.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB32390.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB32390.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001744; KJB32390.1; -; Genomic_DNA. DR RefSeq; XP_012480251.1; XM_012624797.1. DR GeneID; 105795255; -. DR KEGG; gra:105795255; -. DR Proteomes; UP000032304; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 104 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 334 382 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 391 AA; 44652 MW; F820592CBE493FE1 CRC64; MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMQENIRD CRQKASRKRP RDKNYNDHVV KGTKRVSEQD FAKSPVIERA EQVQANLSAE FPSFFKIMIP SVVCRGFWMS LPKEFCQLNL PNHDATVILV GETGKEYRIN FLVQRKALSG GWKKFSKEHG LLVGDALVFH LIRPSKFKVY IVRMNGLDEI DAALGLLRLQ SSANQTGIYA AGKNNSRPFC NDINQYEVHK YGRSFLRAQE NQSENGTLDV GSSKVEGIRF TKTVSIADAI RASEISTLRS GFVPWDNALN SFDFLGTDVG SLHKRVRHVL SHTFESKPEL KLKYKEAKLE RAYAEQETKS LESDLSGKKE EMQRLDAEID ALTVNAKRYE LMFEAAANAP W // ID A0A0D2SNY8_GOSRA Unreviewed; 458 AA. AC A0A0D2SNY8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43696.1}; DE Flags: Fragment; GN ORFNames=B456_007G212100 {ECO:0000313|EMBL:KJB43696.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43696.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43696.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43696.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 401 428 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:KJB43696.1}. SQ SEQUENCE 458 AA; 51596 MW; B0A93C1C20A009D1 CRC64; EEQNRKALAL AREGNSGHLL LLRSPCLLIT ELPVMDRRVK KEAEEIPQRT MSFAGRRLKS AGEEDFILAL STHTPKLNPS SSEKKEISKK ANALTERKQK RKKCQSETII KPAVSDCGEK KISSMKNKDV GDGRCIAEIK SPAMICAEEI QSNLEPEFPS FAKSLVRSHV GSCFWMGLPG MFCKIHLPRK DTTITLEDES GNQFHVKYYA DKTGLSAGWR QFCSAHNLLE GDVLVFQLVE PTKFKIYIIR ANDLNELDGA LGLLNLDAYT KQSDADDAET GPTVSKSTKR KRPKPLPLAS VRKKNKRSGL QILSCNVGQP AEQSENDSEE VGSEVLEGFK RTEYAIQFKD ITSFENILVD GLVIDPELSE DIRSKYYQLC CSQNAFLHEN IIQGAAETRR YFEAKAERDQ TENEIRNLEA KLTELKDASK TFGFEMESLQ SKAETNEFRF EKEVKAPW // ID A0A0D2STN2_GOSRA Unreviewed; 740 AA. AC A0A0D2STN2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_010G157400 {ECO:0000313|EMBL:KJB66768.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB66768.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB66768.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001749; KJB66768.1; -; Genomic_DNA. DR RefSeq; XP_012451921.1; XM_012596467.1. DR GeneID; 105774114; -. DR KEGG; gra:105774114; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 740 AA; 80889 MW; DB576BA4CFBBC172 CRC64; MGGLIDLNST EDDETPLSGS LSPSSSSASV LSAPGSGSSV CLELWHACAG PLISLPKRGN VVVYFPQGHL EQVSDFSGVA AAYDLPSHVF CRVVDVKLHA EGATDEVYAQ VSLVPETEQS EQKLEGGKTE ADGEEEDAET NIKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YNQQRPSQEL VAKDLHGSEW RFRHIYRGQP RRHLLTSGWS AFVNKKKLVS GDAVLFLRGE DGELRLGVRR AAQIKDGSSF PSSCSQQLNC SNFADVVHAV SMKSVFSIYY NPRASSSDFV IPVHKFWKCL DPSFSIGMRF KMQFEAEDAA ERRHSGVITG ISDINPVRWP GSKWRCLMVR WNDIDANRHG RVSPWEIEPS GSVSGSNSLI SPGSKRNRVG FPSGNSEFMV PDGIRASDFG EFLWSQVLQV QENLGFNTLY DGSDSLNMHW SEIRRCIPGS IGSDFSAIGN IGRGSLVSPD ISRKSVGFGE SFRFRKVLQG QEIFVSPPYR NGSTADENEE NDAFGLPDVG QLSGTRSGWS SLMQRYNTHS RTRPFAPSTQ TSSPSSVLTF LQVSNPILNF SPIYNSNNQK RKQGVNKQSS FHAPEMYEGK LFPSSASEHD SRARDLGSSD LFGHSIGSVQ LGDASPLAAQ PVFRTSQELD SSCKSSCRLF GFSLTEGRHD ASKEEDVVQA TSSLAAGAFL PCVREEFHPK PSSVTDTVGS NYTEASNLYS VRDMVLDIAL // ID A0A0D2SVH7_GOSRA Unreviewed; 822 AA. AC A0A0D2SVH7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G054600 {ECO:0000313|EMBL:KJB48159.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48159.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48159.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48159.1; -; Genomic_DNA. DR RefSeq; XP_012436680.1; XM_012581226.1. DR GeneID; 105763131; -. DR KEGG; gra:105763131; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 697 781 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 822 AA; 91275 MW; D11046284BBB1179 CRC64; MKLSASGLGQ QAAHEGENKC LNSELWHACA GPLVCLPTVG SRVVYFPQGH SEQVAATTNK EVDAHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKD TFLPMELGIP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDIEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNENN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVFH TRVSVGMRFR MLFETEESSV RRYMGTVTGI SDLDQVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GSSSLHDNRD DVSSGLMWLR GGSGESFSTF PWMQQRVDPN FPVNDHNLQY QAMLANGLQN LGSGDPLRQQ LQQSLPYVQQ PGNHSLLLQQ QQQRGVSQSV PHNIVQVQSQ ILSESLPSVL GREQVSNHPE EQAQQQHNMI QSDQLLQRQP ANLPSSFLKT DFINSGKFSG SVPPVQNMLG SLCPESSANL LNFSRSGQSM LAGQLTQRSW APKYTHSEVN AFGSSTSLPQ VFPGKDAIIE PDIGNSGAQN SALFGNNNSY GLLLPTMMPA IATSSCEADV PSIPLGDSSF QNPLYGCMQD SSELQSRGQV DPPTPTPTFV KVYKSGSVGR SLDISRFSSY HELREELAQM FGIEGKLEDP LRSGWQLVFV DRENDILLLG DDPWEAFVNN VWYIKILSPE DVQKMGEQRA EPFSPTTPGQ RMNSTGTDTG TGRLSSVGYL EY // ID A0A0D2SW72_GOSRA Unreviewed; 665 AA. AC A0A0D2SW72; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_006G120400 {ECO:0000313|EMBL:KJB35565.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB35565.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB35565.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001745; KJB35564.1; -; Genomic_DNA. DR EMBL; CM001745; KJB35565.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 74703 MW; 24C74DFDB53E7313 CRC64; MEIDLNHALS EVEKTAVCNG GCDKLNCVCS SSSSNLASPP CTSSIYLELW HACAGPLTSL PKKGNLVVYF PQGHLEQLAS ASPFSPLEIS TFDLPPHIFC KVVNVQLLAN KENDEVYTQL TLLPQPELRE PNLESKQLDE LGVDEGDDGS PKRSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQTRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLVAG DAVLFLRGED GELRLGIRRA VRPRNCLPES VIAKQNSYLN VLSPVANALS MKSMFHVFYS PRASHAEFVI PFRKYFKSIA NSVCIGTRFK MRFDMDDSPE RRFSGVVMGM GDSDPYKWPN SRWRCLMVRW DEDNMIDRHE RVSPWEIDPS ASLPPFSIQS SPRLKKLRTG GSRFLDFEEP LRSSKVLQGQ ENVGFVSPLY GRDTVSRPLD FEMQSPAHHQ SLASTGIEKS NISEFMRVRS TTYTGFADSN RFPKVLQGQE ICQLRSLTQK ADLNPGVWAK TNLGCNSFNM HQTLRTNCYP LASEGLRNMY FPYGEFLKTV QEPTMSSYAC PLRRGNVPFN ASSIRTGVGV IVDGFRKPNQ QNEHKPLENI PSPASENNLR NQQDDSFKRN VAGCKLFGFP LNVESPTPNS QNSGSQARQL GRKSY // ID A0A0D2SWF9_GOSRA Unreviewed; 270 AA. AC A0A0D2SWF9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48479.1}; GN ORFNames=B456_008G071400 {ECO:0000313|EMBL:KJB48479.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48479.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48479.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48479.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 165 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 30211 MW; EC57566028B19268 CRC64; MKVQTYPVVK NASKACGTQA LGSIVSRVKT RSLVSDAKRS CQQSARLPSC REFIDLTDSY IESLDDSPLD QKTKKKMTSP SFQPCKLRTN PSESNQAKGI KLEKEKKSLN FQYLTKEVGG ELKCSVKNDS GRRSSARRRP KPDPVYGKQR ACVGASAFRT SNPSFSVVIQ PSYIGSSSAL HIPVEFVKRY LKKSGEMVLR VADGRIWVVE YRRTASNKGR KAKFGSRSWG QFAKDNQLEV GDVCLFELMN ENGNLLEVAI HRKHLLIEID // ID A0A0D2SWG4_GOSRA Unreviewed; 730 AA. AC A0A0D2SWG4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48484.1}; GN ORFNames=B456_008G071200 {ECO:0000313|EMBL:KJB48484.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48484.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48484.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48484.1; -; Genomic_DNA. DR RefSeq; XP_012436967.1; XM_012581513.1. DR GeneID; 105763317; -. DR KEGG; gra:105763317; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 343 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 505 605 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 343 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 505 605 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 730 AA; 82288 MW; 37BB8717582C466B CRC64; MPKSLKENNN SMFTPKTPHF FKIILDANIR DKKLEIPGKF VRKYGNGLSN SVLLTVPSGD TWHVELTKSD GIVWLQNGWQ EFSEYFSLKY GHLLVFKYEG NGKFLVLIFD TSASEIEYPC KSHIEDQESD DQMCLKPVKE EPKDDVCDKP LHGTPSCKET KRKKSRSLCS NAEYLCKSYI DDHKSDDQLC LKPVKEEAKD GVYDETLYET PPCKKARRTK SQSQCSKIEY PCKSHIEDHK SEDQVSLKPV KEEAKDDVCD KTLYETPPCK ETRKKKPQSQ CSKPRKKLKT AQKDKNRKDC EDASTDEEGL QTKVPRDGRA FGAIEYDKAL QRAFSFESEN PFFLVTMQPS YINPGRKMCI PKNFTMKFLT RDLGDLTLCT SDGRTWSAQY LCYMTRNKYT KATIHIGWRQ FMLDNNLEAG DVCVFELISQ TEIMLKVIIY RVRQDASCSS PLGGINSLEN GDNVSSSTPG STESKHHCSI RSLTPHEKAR AIQKASNFKS KNPFFKVVMQ PRYLTIRCSL SIPYKFVNQY LDEEKEEAIL QVSDGRTWVV KFAVKVVTGG QHKAEFSHTW RAFARDNNLE VGDVCVFELI NRNENSFKVS IFSEAPGANS SLSPQAHDVK ASQVASKNCS VPKIEADDDF GNCYAGNPGP AAQPTTIGHQ ENEEEVNPTD DAIASQVASK DFLVPKVEVD DDFGKCYAGN FSPAAQITTT GYQEAEEEVK PTISTGPRGP // ID A0A0D2SWH2_GOSRA Unreviewed; 732 AA. AC A0A0D2SWH2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48489.1}; GN ORFNames=B456_008G071300 {ECO:0000313|EMBL:KJB48489.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48489.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48489.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48489.1; -; Genomic_DNA. DR RefSeq; XP_012436969.1; XM_012581515.1. DR GeneID; 105763318; -. DR KEGG; gra:105763318; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 397 496 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 626 728 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 397 496 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 626 728 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 732 AA; 82693 MW; 51C2D148A2629089 CRC64; MPHSLKANNG SMFASKTPHF FKIILEATIR DKKLGIPRKF VRKYGKGLSS SVLLTVPSGD TWHAQLTKSD GVVWFQNGWQ AFAEYYSLQY GHFLVFRYEG NGKFLVLIFD MSASEIEYPC KSHIEDHNSD DQVCLKLVNK EAKDDTCDGT LYETPPCKET RKKKKKKRSR PPCSKPRKKL KTTQKDKNEK DWEDESTSED DMQTKVPRDE HAFGVIEYDK ALQRASSFRS ENPFFLVIMQ PSYINPGRKM CIPKEFTMKF LKENLGDLTL CTSEGKTWST QYWRYISRNK YTKAIIHIGW RQFMLDNNLE AGDVCVFELI SQTESMLKVI IYRVRQDTSC SSPLGGINSS ENGGNVNSST LGSTESNHDC LMRPMTPVEK ARAILKASNF KSKNPFFKVV MQPRYLILRC SLGIPYKFVN RHLDEEKEEA ILRVSDGRTW VVKFTVKVFT GGQHKAEFST WRAFARDNNL EVGDVCVFEL INRHENSFKV SIFSAAPGAN SSLSPQADDA EASQVASKNC LVPRIEADDD FGNCYAGNST DDAIASQVAS KDWLVPKIEA DDDFGKCHVG NSSSAAQFPA IGYQETEEEV QPTISTRPRG PQRLQAGEKA KALQRASGFK SQNPFFTVAM QPSYVSNGYR LAIPLDFSRK YLRNGSGNAI LSMVGDGKTW LTKYHREAKG TNPRAKLIDG WKTFAKDNNL EIGDVCVFEM INSEGYQLSL NVAIYKPQED QT // ID A0A0D2SY21_GOSRA Unreviewed; 886 AA. AC A0A0D2SY21; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G097200 {ECO:0000313|EMBL:KJB49004.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49004.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49004.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49004.1; -; Genomic_DNA. DR RefSeq; XP_012437324.1; XM_012581870.1. DR GeneID; 105763606; -. DR KEGG; gra:105763606; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 780 864 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 526 550 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 886 AA; 98552 MW; 478F18206320E959 CRC64; MRLSSSGFNQ QTEEDFCTGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS TNKEVDAHIP NYPSLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKNVFLLPAE LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSLQPPAQ ELVARDLHEN EWKFRHVFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYYTRVSVG MRFRMLFETE ESSVRRYMGT ITGISDLDPG RWPNSHWRSV KVGWDESTAG EKQPRVSLWE IEPLTTFPMY SSPFPLRLKR PWPSALPSFH AFKDGDMNIN SQMMWLQGGI GDQGLQSLNF QGFGVAPWMQ PRLDTSSIQG VQPDLYQAMA AAAFQEMRTV DSSKLGSQSL LQFQQPQSMS NGSPAIIQRQ MLQQSQTQNA FLQGFQENQT TSQVQLLQQL QRSNSYNNHR QQQQQQQQQQ RQQQQQQQQS QQMQQIPQFS DQQQISNLIP AFPKASGSQA QSSSLPTAAS ECQQPTFSDP LGNSLAISNA SSMQSILGSL SHAGASHLHN LKGSNPIVSS SLLSKPVAIE PQLSSETANY ILPQVEHLGM VQSNVLSNVL PPFPGREYSA YQSSTDTQNN FLFGVSIDSS SLVLQHGMTN LKNIGNENDS LSLPYAASNF TSASGTDFPL NSDMTTSSCV DESGYLQSSE YVDQVNPPTG TFVKVHKLGS FGRSLDISKF SSYNELRCEL ARMFGLEGQL EDPQRSGWQL VFVDRENDIL LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK EGLNPAASDP SQTRHQ // ID A0A0D2SZA7_GOSRA Unreviewed; 93 AA. AC A0A0D2SZA7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB47446.1}; DE Flags: Fragment; GN ORFNames=B456_008G0270001 {ECO:0000313|EMBL:KJB47446.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB47446.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB47446.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB47446.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 90 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. FT NON_TER 93 93 {ECO:0000313|EMBL:KJB47446.1}. SQ SEQUENCE 93 AA; 10647 MW; 04E091E2DFD16E2D CRC64; MQLFVKALTT IEVERRLILP RESLPALPRF EGSHEHGITL QVKDDAGNLR NFRCKKGYGG GDKLVIETDW ILFVKSKKLR SGDVVAFYKD DDR // ID A0A0D2SZM1_GOSRA Unreviewed; 653 AA. AC A0A0D2SZM1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G126200 {ECO:0000313|EMBL:KJB49574.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49574.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49574.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49574.1; -; Genomic_DNA. DR RefSeq; XP_012437775.1; XM_012582321.1. DR GeneID; 105763914; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 630 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 653 AA; 73181 MW; 90CAAA3899A718F9 CRC64; MAYCLGVDDL YPELWKLCAG PLVEIPHVQE RVFYFPQGHI EQLEASTNQE LNYEAPLFNL SSKILCRVLH VQLLAEQETD EVYAQITLQP EPDQSELTSP DPFPTEVPER EVHSFCKILT ASDTSTHGGF SVLRKHATEC LPPLDMNQAT PTQELTAKDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGDNGELR VGVRRLGNQQ STMPSSVISS QNMHLGVLAT AAHAVMTQTL FVVYYKPRTS QFIIGVSKYL EAINNRSSVG MRFKMRFEGE DSPERRFTGT IVGVGDASPH WSESKWRSLK IQWDEPAMIQ RPERVSPWEI EPFSASASIN LIQPAVKSKR PRPVYILASD TTTNSTGSAF WCHGSTKSHE LARAGSIAEV QSSESSQVVW PMRQNEADAG YNTRARLENA WPPSSLVNVS LNFFRNPADA SPVELRTSND VMRDQVEKGK KLEISTGCRL FGFNLTNSNS AVSGTVIAPS HIDENPETFQ SPKQQKQNAS ETSTKEIKAK HGTTSSMRTR TKVQMQGIAV GRAIDLTVLK GYDDLINELE KMFDIEGELR HRTKWSVVFT DNEGDMMLVG DDPWVGFCKM VRKIFIYSVD EVKKINGRCK FQASSLEGEG TVVSLGLEHR SGT // ID A0A0D2SZM4_GOSRA Unreviewed; 613 AA. AC A0A0D2SZM4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G126200 {ECO:0000313|EMBL:KJB49579.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49579.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49579.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49579.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 613 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 613 AA; 68691 MW; 24B89F0D95D601DB CRC64; MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPEREV HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMNQATPT QELTAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQN MHLGVLATAA HAVMTQTLFV VYYKPRTSQF IIGVSKYLEA INNRSSVGMR FKMRFEGEDS PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIEP FSASASINLI QPAVKSKRPR PVYILASDTT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM RQNEADAGYN TRARLENAWP PSSLVNVSLN FFRNPADASP VELRTSNDVM RDQVEKGKKL EISTGCRLFG FNLTNSNSAV SGTVIAPSHI DENPETFQSP KQQKQNASET STKEIKAKHG TTSSMRTRTK VQMQGIAVGR AIDLTVLKGY DDLINELEKM FDIEGELRHR TKWSVVFTDN EGDMMLVGDD PWV // ID A0A0D2T127_GOSRA Unreviewed; 559 AA. AC A0A0D2T127; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB69408.1}; GN ORFNames=B456_011G022400 {ECO:0000313|EMBL:KJB69408.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69408.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69408.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69408.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 342 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 342 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 559 AA; 61671 MW; 5F12A53AF0E9DC8D CRC64; MTSTSVATSS SRICFNSVCN DLKSERPRKG WQLRTGELAE LCDRCASIYD EGRFCDAFHL NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS SLPERFKDCS AKGWSQLTGS GPAPWRQAPG LFNSSTSQPE LHSRVPYEVD LSTGIDRLNV SERLSIPSLE KKKNEDFPER LMNGPLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK EDSSNPPFGL AVPYTSIDEA NGQMGVSGTH LRPNPQPSLA KQFHSNPHNG LDSSGETQMR NGRPRADGRG RNQLFPRYWP RFTDQDLQQI SADSNSIITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN VVSIEGFEFE EYEVSYIFI // ID A0A0D2T1N1_GOSRA Unreviewed; 681 AA. AC A0A0D2T1N1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G030900 {ECO:0000313|EMBL:KJB69568.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69568.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69568.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69565.1; -; Genomic_DNA. DR EMBL; CM001750; KJB69568.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 74558 MW; 5759D096894ECC97 CRC64; MGCLIDLNAT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEKLQEVD GEDEDAEADM KLATPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYD QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAA QIKNGASFLS LCSKQLNRST FADAVHAISM KSVFSIYYNP RASSSEFIVP VCKFRKSLDR SFSVGMRFKM RFETENAPER RSSGLITGTS DLDPVRWPGS KWKCLSVRWD DIDANKHGRV SHWEIELSGS ISSSNCLLSP CSKRNRVGLP SGKPEFMVPD GIGAPDFGEP LRFQKVLQGQ EILGFSTLYN SADSHNMHWS EIRRCFPGSN GSGIATIGNV GRDPPLNPVI SYKGVGFGES FGFHKVLQGQ EIFLSSLYRR GSTMEETRGN DSAGLPNVGQ MSGTRSGWSS SMQGYNTHSP VQPSAQVSSP SSVLMFQQAS NPVPNFNPTR NFNQEMERGV SSFRVPETYG AKLLSSSISE HDSQPLAAQP SFGTNQELAS CKSSCRLFGF SLTEGDLDAT KEDNMVHATL SLGRGSLLPC IGENFHPNPP AVASTVWKQL Y // ID A0A0D2T1N3_GOSRA Unreviewed; 683 AA. AC A0A0D2T1N3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G030900 {ECO:0000313|EMBL:KJB69573.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69573.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69573.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69571.1; -; Genomic_DNA. DR EMBL; CM001750; KJB69573.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 683 AA; 74748 MW; 069BBDB34BD3D6BB CRC64; MGCLIDLNAT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEKLQEVD GEDEDAEADM KLATPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYD QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAA QIKNGASFLS LCSKQLNRST FADAVHAISM KSVFSIYYNP RASSSEFIVP VCKFRKSLDR SFSVGMRFKM RFETENAPER SCRSSGLITG TSDLDPVRWP GSKWKCLSVR WDDIDANKHG RVSHWEIELS GSISSSNCLL SPCSKRNRVG LPSGKPEFMV PDGIGAPDFG EPLRFQKVLQ GQEILGFSTL YNSADSHNMH WSEIRRCFPG SNGSGIATIG NVGRDPPLNP VISYKGVGFG ESFGFHKVLQ GQEIFLSSLY RRGSTMEETR GNDSAGLPNV GQMSGTRSGW SSSMQGYNTH SPVQPSAQVS SPSSVLMFQQ ASNPVPNFNP TRNFNQEMER GVSSFRVPET YGAKLLSSSI SEHDSQPLAA QPSFGTNQEL ASCKSSCRLF GFSLTEGDLD ATKEDNMVHA TLSLGRGSLL PCIGENFHPN PPAVASTVWK QLY // ID A0A0D2T1X1_GOSRA Unreviewed; 732 AA. AC A0A0D2T1X1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48486.1}; GN ORFNames=B456_008G071200 {ECO:0000313|EMBL:KJB48486.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48486.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48486.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48486.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 345 445 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 507 607 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 345 445 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 507 607 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 732 AA; 82543 MW; C6BBF71976AB0DD4 CRC64; MPKSLVRKEN NNSMFTPKTP HFFKIILDAN IRDKKLEIPG KFVRKYGNGL SNSVLLTVPS GDTWHVELTK SDGIVWLQNG WQEFSEYFSL KYGHLLVFKY EGNGKFLVLI FDTSASEIEY PCKSHIEDQE SDDQMCLKPV KEEPKDDVCD KPLHGTPSCK ETKRKKSRSL CSNAEYLCKS YIDDHKSDDQ LCLKPVKEEA KDGVYDETLY ETPPCKKARR TKSQSQCSKI EYPCKSHIED HKSEDQVSLK PVKEEAKDDV CDKTLYETPP CKETRKKKPQ SQCSKPRKKL KTAQKDKNRK DCEDASTDEE GLQTKVPRDG RAFGAIEYDK ALQRAFSFES ENPFFLVTMQ PSYINPGRKM CIPKNFTMKF LTRDLGDLTL CTSDGRTWSA QYLCYMTRNK YTKATIHIGW RQFMLDNNLE AGDVCVFELI SQTEIMLKVI IYRVRQDASC SSPLGGINSL ENGDNVSSST PGSTESKHHC SIRSLTPHEK ARAIQKASNF KSKNPFFKVV MQPRYLTIRC SLSIPYKFVN QYLDEEKEEA ILQVSDGRTW VVKFAVKVVT GGQHKAEFSH TWRAFARDNN LEVGDVCVFE LINRNENSFK VSIFSEAPGA NSSLSPQAHD VKASQVASKN CSVPKIEADD DFGNCYAGNP GPAAQPTTIG HQENEEEVNP TDDAIASQVA SKDFLVPKVE VDDDFGKCYA GNFSPAAQIT TTGYQEAEEE VKPTISTGPR GP // ID A0A0D2T1X7_GOSRA Unreviewed; 346 AA. AC A0A0D2T1X7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48491.1}; GN ORFNames=B456_008G071600 {ECO:0000313|EMBL:KJB48491.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48491.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48491.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48491.1; -; Genomic_DNA. DR EMBL; CM001747; KJB48493.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 38707 MW; 554E86D183589C23 CRC64; MRIDASNQHE QNSKLEVLSS GTSPDAQRSV KTKAFSCVQR LAAIEKAHAV QIASAFESTE NPVFMIVMQP SYVRGRMFIP SDFARKFLTV HKSNLTLCNS TGKTWHAKLY YPANKKPNAH LYGGWREFVE DNHLNVGDIC VFELIKYPEI LMKTRSSVQH CKMTRTSLSG SIQAKGIKHE KGKSLNFQYS TEELGGGLKN SAKGDSGRKS GARRCLKPDP VYQKRRACTG GGAFRTSNPS FSVVIHPSHV GSCSTVHIPE EFGKRYLKKS GEMMLRVADG RSWNVEYERR GRSKGRKAVF GGKSWGQFAM DNELEVGDVC VFELMNENGN LLEVVIHRKL LLVEIN // ID A0A0D2T3G5_GOSRA Unreviewed; 844 AA. AC A0A0D2T3G5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G097200 {ECO:0000313|EMBL:KJB49006.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49006.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49006.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49006.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 776 844 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 522 546 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 844 AA; 93778 MW; CEAEA376202D6890 CRC64; MRLSSSGFNQ QTEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKNV FLLPAELGTP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELVA RDLHENEWKF RHVFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYY TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPGRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS ALPSFHAFKD GDMNINSQMM WLQGGIGDQG LQSLNFQGFG VAPWMQPRLD TSSIQGVQPD LYQAMAAAAF QEMRTVDSSK LGSQSLLQFQ QPQSMSNGSP AIIQRQMLQQ SQTQNAFLQG FQENQTTSQV QLLQQLQRSN SYNNHRQQQQ QQQQQQRQQQ QQQQQSQQMQ QIPQFSDQQQ ISNLIPAFPK ASGSQAQSSS LPTAASECQQ PTFSDPLGNS LAISNASSMQ SILGSLSHAG ASHLHNLKGS NPIVSSSLLS KPVAIEPQLS SETANYILPQ VEHLGMVQSN VLSNVLPPFP GREYSAYQSS TDTQNNFLFG VSIDSSSLVL QHGMTNLKNI GNENDSLSLP YAASNFTSAS GTDFPLNSDM TTSSCVDESG YLQSSEYVDQ VNPPTGTFVK VHKLGSFGRS LDISKFSSYN ELRCELARMF GLEGQLEDPQ RSGWQLVFVD RENDILLLGD DPWQ // ID A0A0D2T466_GOSRA Unreviewed; 758 AA. AC A0A0D2T466; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G210200 {ECO:0000313|EMBL:KJB51289.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB51289.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB51289.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB51289.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 165 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 635 719 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 63 165 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 758 AA; 84605 MW; 3D6DF743CA76901D CRC64; MPVYNLPSKI LCRVINVQLK AEPDTDEVFA QVTLLPEPTQ QDENTVDKES PVPQPPRFHV HSFCKILTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN VPSSVISSHS MHLGVLATAW HAFTTKTIFT VYYKPRTSPA EFIVPFGQYM ESLKNNYSIG MRFKMRFEGE EAPEQRFTGT VVGIEDADPK RWQDSKWRCL KVRWDETSSI PRPERVSPWK IEPPLAPPAL NPLPMPRTKR PRSHAVPSSP DSSVLTREGS SKVTIDPSSA SGLSRVLQGQ EFSTLRGNFA ESIESDTAEK SVMWPPSVDD KNNDVVSASR RFPSENWMSS GRHERTCTDL LTGFGSNAES LHGYCSSLVD QTLVAGNSTR KQSLHQEGKL GSWSLMPSGL SLKLADTNAK SPLQGSDVPY QMRGNGRCSG FDDYPILQGH RIEHSHGNWL MPPPTSSHHE SNPVQSRDLM PKTSFVQGHE NGKYREGNCK LFGIPLIRNS VASEPTVSHT NALSKPVAHM QAASHQVLEF VSAQNSEKLK VLQLAEVEDL SNYNEQEKQP RTREIQSKPS SASTRSCTKV HKQGIALCRS VDLTKFNDYD ELIAELDGLF EFKGELMAPK KNWLVVYTDD EGDMMLVGDD PWQEFCAMVR KIGIYTREEV QKMKPGSLSS KGEDNSVSTG GVDGKEMMCP SASSAENC // ID A0A0D2T563_GOSRA Unreviewed; 615 AA. AC A0A0D2T563; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G126200 {ECO:0000313|EMBL:KJB49576.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49576.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49576.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49576.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 615 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 615 AA; 68876 MW; 66305E089F0D95D6 CRC64; MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPEREV HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMNQATPT QELTAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQN MHLGVLATAA HAVMTQTLFV VYYKPRTSQF IIGVSKYLEA INNRSSVGMR FKMRFEGEDS PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIEP FSASASINLI QPAVKSKRPR PVYILASDTT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM RQNEADAGYN TRARLENAWP PSSLVNVSLN FFRNPADASP VELRTSNDVM RDQVEKGKKL EISTGCRLFG FNLTNSNSAV SGTVIAPSHI DENPETFQSP KQQKQNASET STKEIKAKHG TTSSMRTRTK VQMQGIAVGR AIDLTVLKGY DDLINELEKM FDIEGELRHR TKWSVVFTDN EGDMMLVGDD PWGIL // ID A0A0D2T567_GOSRA Unreviewed; 588 AA. AC A0A0D2T567; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G126200 {ECO:0000313|EMBL:KJB49581.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49581.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49581.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49577.1; -; Genomic_DNA. DR EMBL; CM001747; KJB49581.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 588 AA; 65836 MW; EF38A76C9269369F CRC64; MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPEREV HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMNQATPT QELTAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQN MHLGVLATAA HAVMTQTLFV VYYKPRTSQF IIGVSKYLEA INNRSSVGMR FKMRFEGEDS PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIEP FSASASINLI QPAVKSKRPR PVYILASDTT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM RQNEADAGYN TRARLENAWP PSSLVNVSLN FFRNPADASP VELRTSNDVM RDQVEKGKKL EISTGCRLFG FNLTNSNSAV SGTVIAPSHI DENPETFQSP KQQKQNASET STKEIKAKHG TTSSMRTRTK VNHGVSVSAF LYSDPSCYSR YVYFPKGSNA RDCRRSCY // ID A0A0D2T5X5_GOSRA Unreviewed; 530 AA. AC A0A0D2T5X5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB71068.1}; GN ORFNames=B456_011G103800 {ECO:0000313|EMBL:KJB71068.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB71068.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB71068.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB71068.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 40 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 398 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 433 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 40 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 398 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 433 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 59715 MW; 1F8CF3AB417710B8 CRC64; MWLQDGWQNF AEHYSVESGH FLVFRYEGHC HFHVIIFDRT ATEIEYPDVN DNEETQKQEV KIKQESEDDE PISIMNEISH GLRQKPGLQC PRPHKTMKSE TMLSGFSAGT GRGEMELTTA SKVTSDEKFM VLQRVASAFQ STNPFFLVLM QPTYVSHNPK HSCILGIPRE FSRLFLKQNG NVVLCDSNGK SWAAKYATSL GSNQRPYVRL CNGWGAFVRD KNLQVGDVCA FELINCKQIS FKVSIFEGKK SGFHGSPPST DGYFSAKRER GTSYTQPLKA RETALEKALA FTSENPFLVV VLRPSYIRTH ALCISNHFAR KHFESALTSV DVNLCLSNGK SWPAKYHQRS IGNPNGKICH GWKAFVNDNN LQPGDVCVLE MTNHDTKISF KVIIFKAIAD ANSHPLEGVS QKPLGLTSQS LKAATEMTST PPLFRSVVLP LHLKEKRASI PVGFVEQYLK PDMETVILKV EDRSWPVKIA SNPQNRQARF TNGWIEFARE NFLREGDICV YELDALNHGL LNVCISKSDD // ID A0A0D2T7C5_GOSRA Unreviewed; 886 AA. AC A0A0D2T7C5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB71533.1}; GN ORFNames=B456_011G127500 {ECO:0000313|EMBL:KJB71533.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB71533.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB71533.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB71533.1; -; Genomic_DNA. DR RefSeq; XP_012454318.1; XM_012598864.1. DR GeneID; 105776293; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 605 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 290 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 886 AA; 97423 MW; D0E3CE88A31A11A3 CRC64; MIYIWSRSAY EQSIFCDIFH SKDAGWRECS SCGKRLHCGC IVSRSLLELL DSGGGIICIS CAKKSGLNPM IEDEKPNGFG IVKIDAGQLH SISADNQLIS ISNENLKLMQ LSNNAESIGL RQLLQLHNDD SSRSLLQMKQ EEVLPPAIDI GSTCLSNTNQ ASNGSVQAVK PAIFKANISE TLPQTNLSIS LGSSLGNQNV FPGSVVDEKG KMSSVLQQAS KSLHLLPKPP KPVLAGLEVN AGMVPQIRVA RPPVEGRGRN QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC MQSMQLQAGD TVTFSRMDPE GKLVMGFRKA TNNAVVQENL PSAIPNGTLS SESLFSGVFE NLPIISGYSG LLQSPKGSTD PHLNALSKHL SSTGGDISWN KSGKHEDRIR EGLLLPSMLT PERKRTRNIG SKSKRLLIDS QDALELKLTW EEAQDLLRPP PSIKPSVVTI EDHDFEEYDE PPVFGKRSIF AVRSTGGQEQ WAQCDSCSKW RRLPVDVLLP PKWTCADNNW DQSRSSCSAP EELTPRELEN LLRLNRDFKK RRIAAFTRPT QEHESSSGLD ALANAAILGD NADNSGTTSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCVVCMTV KRRFKTLTMR KKKRQSEREA EIAQRNQQAW GPSEEAEVDS SAKHVSSSHL NPFENEARSA NELESKSQSS NKLVEANKGQ IDLNCDPDRE DDSQLGPNRT SMTSLVRVAS LPLETYLKEN GLTNLVYEQQ GNSASNAPPQ SMSGTVEGET QENSCFPSAT EEPESKDEEN GETGSDRVDD NNDKDP // ID A0A0D2T8E3_GOSRA Unreviewed; 357 AA. AC A0A0D2T8E3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB50751.1}; GN ORFNames=B456_008G185900 {ECO:0000313|EMBL:KJB50751.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB50751.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB50751.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB50751.1; -; Genomic_DNA. DR RefSeq; XP_012438643.1; XM_012583189.1. DR GeneID; 105764562; -. DR KEGG; gra:105764562; -. DR KO; K09287; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 193 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 193 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 40051 MW; 09664D1FA47372A5 CRC64; MDGSSIDEST TSDSISVSIA PSNISPLPQL TKSPDSLYRV GSGTSVIVDS ESGVEAESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KAYDIAAQRF RGRDAVTNFK HLHEMEDDDI QIAFLNSHSK AEIVDMLRKH TYNDELEQSR RSYGFDGNGK RIVRKEDGFG TLGFELKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKYFP LQSGSASSKG VLLNFEDVTG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKK LKAGDIVSFQ RSTGTEKQLY IDWKARTGLG SGLENPVQMV RLFGVNIFKM PGSENVGLAG GCNGKRTREM ELLELECSKK QRVIDAL // ID A0A0D2T8V4_GOSRA Unreviewed; 749 AA. AC A0A0D2T8V4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G044900 {ECO:0000313|EMBL:KJB40060.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB40060.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB40060.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB40060.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 749 AA; 83482 MW; 8765A6C137CA6105 CRC64; MTTSEISIKG NCVNGRGDGF SSGYTEPRDT RNAMEGQNGH SARTAAVRET VDHERALYTE LWHACAGPLV TVPRELERVF YFPQGHIEQV EASTHQVSEQ QMPVYDLPPK ILCRVINVQL KAEPDTDEVF AQVTLLPEHN QDENMVDKEP PIHEPPRFQV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSLQPPT QELVSKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRALRQQGN VPSSVISSHS MHLGVLATAW HAYTTRTIFT VYYKPRTSPA EFIVPFNQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGIEDADPK RWQGSKWRCL KVRWDETSTI PRPERVSPWK IEHALSPPAL NPLPMPRPKR PRTNAVSSSP DSSVLSREGS SKVTVDPLPA SSFSRVLQGQ EFSTLRGTFA ESNDSDTADR SVMWPPSIDD EKIDVAHGER KFGPENWMPS RRHEPTYTDL LSGFGSNADT SRGYYPSFVD QTSVAGNSGK KQLLGQEGKL GSWSLLPSGL SLKLSDSSTD PPLQGSDVPY QARGNGRFSG FGDYPILEGH RIECSRGNWL MPPPTTSCYD NSIHSRDLMP KTSLAQEHKN GKSREGNCKL FGIPLISTSS ASEPAVSHIS AFAKPVGHMQ AALHQFHALE SDKRSENSNA SQMAEDVSAF NEQEKIVKLG QPHAREFQSK LSTASTRSCT KVLSLVFDS // ID A0A0D2T9V7_GOSRA Unreviewed; 851 AA. AC A0A0D2T9V7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G210200 {ECO:0000313|EMBL:KJB51286.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB51286.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB51286.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB51286.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 727 812 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 94806 MW; 1B3D1FE14E7AFFFA CRC64; MKGNCVNVRG GESCSSGYSE SMDARKTMEG QNGHSTHQAA IRDPETALYT ELWHACAGPL VTVPREGERV FYFPQGHIEQ VEASTNQVPD QHMPVYNLPS KILCRVINVQ LKAEPDTDEV FAQVTLLPEP TQQDENTVDK ESPVPQPPRF HVHSFCKILT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELVAKDL HGNEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQQ GNVPSSVISS HSMHLGVLAT AWHAFTTKTI FTVYYKPRTS PAEFIVPFGQ YMESLKNNYS IGMRFKMRFE GEEAPEQRFT GTVVGIEDAD PKRWQDSKWR CLKVRWDETS SIPRPERVSP WKIEPPLAPP ALNPLPMPRT KRPRSHAVPS SPDSSVLTRE GSSKVTIDPS SASGLSRVLQ GQEFSTLRGN FAESIESDTA EKSVMWPPSV DDKNNDVVSA SRRFPSENWM SSGRHERTCT DLLTGFGSNA ESLHGYCSSL VDQTLVAGNS TRKQSLHQEG KLGSWSLMPS GLSLKLADTN AKSPLQGSDV PYQMRGNGRC SGFDDYPILQ GHRIEHSHGN WLMPPPTSSH HESNPVQSRD LMPKTSFVQG HENGKYREGN CKLFGIPLIR NSVASEPTVS HTNALSKPVA HMQAASHQVL EFVSAQNSEK LKVLQLAEVE DLSNYNEQEK QPRTREIQSK PSSASTRSCT KVVHKQGIAL CRSVDLTKFN DYDELIAELD GLFEFKGELM APKKNWLVVY TDDEGDMMLV GDDPWQEFCA MVRKIGIYTR EEVQKMKPGS LSSKGEDNSV STGGVDGKEM MCPSASSAEN C // ID A0A0D2TCY1_GOSRA Unreviewed; 684 AA. AC A0A0D2TCY1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G238900 {ECO:0000313|EMBL:KJB73563.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB73563.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB73563.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB73563.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 599 680 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 684 AA; 75721 MW; 2E14D2E49C2683D0 CRC64; MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LVPLRENSFG VEDDGFDGNV GVENPEKSAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSASG TSGSQIGSYS PFLREGESKL MRKDCSGDPR GRVRADSVIE AASRAASGQP FEVVYYPRTS TPEFCVKASS VRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGTISTAKVV DPIRWPNSPW RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDFSFLNQIP MPSFSGNTFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR TAPPIRLSGD NFCSDHPNNT NISSLLTIGN PTQSLKQSND SKTPHIVLFG QLIFCEQRAS QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKEH QKTDLGLETG HCKVFMESEN VGRTLDLSVL GSYEELYGKL ANMFGIESSE MLSSVLYRDA AGSVKHTGDE PFRYNNFLSI TSLKLTKYFS FQFI // ID A0A0D2TD41_GOSRA Unreviewed; 637 AA. AC A0A0D2TD41; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_007G109500 {ECO:0000313|EMBL:KJB41550.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41550.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41550.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41550.1; -; Genomic_DNA. DR RefSeq; XP_012490133.1; XM_012634679.1. DR GeneID; 105802809; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 523 615 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 75 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 637 AA; 71196 MW; 37D01CA98A6450BA CRC64; MEQLEASTNQ ELSNQTPLFN LPSKILCRVL HVELLAEQET DEVYAQITLQ PEDQSEPTSL DPFPTEAPKR KVHSFSKILT ASDTSTHGGF SVLRKHATEC LPPLDMNLAT PTQELVAKDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGDNGELR VGVRRLARQQ STMPSSVISS QSMHLGVLAT AAHAVTTHTL FVVYYKPRTS QFIIGVNKYL EAINNGFSVG MRFKMRFEGE DSPERRFTGT IVGVGDISPH WSESKWRSLK IQWDEPAAIQ RPERVSPWEI EPFVASASTN AQPTIMCKRP RPVDIPASEI TTSSAGSAFW CRESIQSHEL TPVGSTLEVQ SSENQVMWPM RQKEADNCLI NGNGGYKSRT PPENAWPPSP LVNVSLNLFP DSMENNYKTG ALQTALTGYA KGLMHDQVEK RKTETFTGCR LFGFNLTDST SVAAPPDKEQ TSTSIDYNGV RGHVPAAFHV EQKPETSKEQ KQVASETSTQ EMQAKQGSAT SMRSRTKVHM QGIAVGRAID LTALKGYNDL INELEKMFEI KGELCRSGQW SIVFTDDEGD MMLVGDDPWV EFCKMVRKIF IYSSEEVKKI STRCKFPASS MECEGTVVSL DSEHRSV // ID A0A0D2TDC0_GOSRA Unreviewed; 421 AA. AC A0A0D2TDC0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB41655.1}; GN ORFNames=B456_007G114200 {ECO:0000313|EMBL:KJB41655.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB41655.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB41655.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB41655.1; -; Genomic_DNA. DR RefSeq; XP_012490204.1; XM_012634750.1. DR GeneID; 105802860; -. DR KEGG; gra:105802860; -. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 30 {ECO:0000256|SAM:SignalP}. FT CHAIN 31 421 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5002252480. FT DOMAIN 132 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 421 AA; 47771 MW; 35658F58A3DC14C3 CRC64; MNTSKKPLFA EGNFWWWWVI LMNFVQDEDH EENDDEVTRE NTSNFPFSSS SSSATSNNKD TVAQQHQKHL WLGTLDSRED YKVQVPAIKF DKKLGQMDLS LGNNNEYQSN IGSCIGGDSG STIRCIEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL HSSTNEKGLL LNFEDRNGKS WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDTVSFQRG VGESGKHRLY IDWRRRPNAP DPTTLAHIQL QSQFNFPHSV RWGSLYSMPQ PMCVPRNYEP LHRLNYSIYP NTHRQRQAIT YGNAGQYYPR SSSGSHHHQI GAVQAGGAEP MVIDSVPVVQ GNKTVAKRLR LFGVNLECPN TTQAESSSGF PHGTIGSDDS PHFSSFSRQS TLSNNNTLRQ SGMQAEYSKK GKSSLSIDLD L // ID A0A0D2TFP7_GOSRA Unreviewed; 811 AA. AC A0A0D2TFP7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G078800 {ECO:0000313|EMBL:KJB55489.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB55489.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB55489.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB55489.1; -; Genomic_DNA. DR RefSeq; XP_012443345.1; XM_012587891.1. DR GeneID; 105768136; -. DR KEGG; gra:105768136; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 676 758 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 173 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 89546 MW; 1A388B3622A1F9A4 CRC64; MEIDLNHAVN EVEKTVLCNG SCEKASACVY CLSSSSSSSS SSSSSSSCSS NSGSPPCSSS IDLELWHACA GPLTSLPKKG NVVVYFPQGH LEQLALAFPF SPLDTFDLPP QIFCKVMNVQ LLANKENDEV YTQVTLLPQP ELGGHNLGSK QLDEVGADEH ADGSPSKPTS HMFCKTLTAS DTSIHGGFSA PRRAAEDCFP RLDYKQTRPS QELVAKDLHG VEWRFRHIFR GQPRRHLLTT GWSVFVSQKN LIAGDAVLFL RGEDGELRLG IRRAVRPRTG LPDSVIAKHN SYPKVLSAVS NALSTKRVFQ VCYCPRASHA EFVIPFQKYI KSITNPMCTG ARFRMKFEMD DLPERRCNGV VTGIGDSDPY KWPNSKWRCV MVRWDDDIAS DHQERVSPWE IDPPVFPPPL SIPSPFRLKK LRTGLQTAAL DTPITGGVGY LDFEESTRSS KVLQGQENVG FISPVYGCGT VNHPLNSEMQ SMAHQSLAST GIGKSNISDF MRAHSSSYTG FAETNRFPKV LQGQEICSLR SLTHKADLNL GVWAKTNHGC NSFNMNQAPN TNCYPEGLRN MYFPYNEFYK AGQEPKMFSY ASKLPRGNVL FNASSIKPGV SVDDIRKPNP PNDHKPMENI PSPGFGKKLR NQQNECYKGN VAGCKLFGFS LTAESPTLNS QNSGKRSCTK VHKQGSLVGR AIDLSRLYGY KDLMTELEHL FGMEGLLNDP DKGWRVLYTD RDNDVMVVGD DPWHEFCDVV SKIHIYTGEE VEKMTVGMGS DETQSCLEEA AVIMEASKSS SVGQPDSSPT VMRGMKISVC F // ID A0A0D2THJ6_GOSRA Unreviewed; 681 AA. AC A0A0D2THJ6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G107800 {ECO:0000313|EMBL:KJB56149.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB56149.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB56149.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB56149.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 75630 MW; F5BC368FC4AD9612 CRC64; MRKEAEKSLD PQLWHACAGS MVQIPPVNSK VFYFPQGHAE HSLSPVDFSS SPPIPALVLC RVASVKFLAD AETDEVYAKI MLVPLPNTEP DLENVAVLGG GSDNVEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYTADPPVQT VIARDVHGEI WKFRHIYRGT PRRHLLTTGW SSFVNHKKLV AGDSIVFLRA ENGELCVGIR RAKRGNDTGA ESGLGNGNYV SPYGGFSGFL KEDESKITRK GNPRGKGKVR AEAVVEAVGL AANGQPFEIV YYPRASTPEF CVKASVVRAA MRVPWCSLMR FKMAFETEDC SRISWFMGTV SSVHIADPLR WPNSPWRLLQ VTWDEPDLLQ NVERVSPWLV ELVPNMLPVH LSPFSTVTPR KKLRLPEHLD FPLVEQFPMP SFSGHPLRSS NPLCCLSDNA PAGIQGARHA QVRLSSSDPH LNKLKSGLFP SGFQLFDPQA RVPNGISMTK HTDSNDDNLS CLLTVGNSSP KKKSENGKRH QFLLFGQPIL TEQQLSRSCS TGVKTALENE DKRKDYSNGS ESALENQLSP EKSFTTRLLW QQDYQAPEPG SATGHCKVFL ESEDVGRTLD LTVLGSYEDL YMRLANMFGR ERSEMLGHVL YRDATGAVKQ TGDEPFSTFM KTVKRLNIRM DSRNDTDGRD SNCQKQTRRA K // ID A0A0D2THR6_GOSRA Unreviewed; 338 AA. AC A0A0D2THR6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB54096.1}; GN ORFNames=B456_009G020300 {ECO:0000313|EMBL:KJB54096.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB54096.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB54096.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB54096.1; -; Genomic_DNA. DR RefSeq; XP_012441778.1; XM_012586324.1. DR GeneID; 105766746; -. DR KEGG; gra:105766746; -. DR KO; K09287; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 162 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 162 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38910 MW; 21A976433B5FBA3D CRC64; MEEEITSVIL SGEANTHSDV SDSTSTTHQA NKRQRCGGKG NSSQYKGVMR QKNGQWGAQL YANHTRIWLG TFKSEIDAAM AYDSAAIKFR TEDTHRNFPW NEITIEEPKF LSHYSVEIVL SMIRDGSYQY KFMDFIKAHS RNTKLNLVGT YSNEGLICKQ LFQKELTPSD VGKLNRLVIP KKYAVKYFSP VFGTENENAD VGDRKTNDVE LVFYDKFMRI WKVRYCYWNS SQSFVFTRGW NRFLKEKELK AKDVVSFFVC ECRKENDVQR FCMIDANKSG NGGTFVAENN VHVGIEVDLQ LRLGHSYLVQ EEQRSMAAAK PKQDDKTEGF KLFGMQIT // ID A0A0D2TIU7_GOSRA Unreviewed; 631 AA. AC A0A0D2TIU7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43600.1}; DE Flags: Fragment; GN ORFNames=B456_007G209200 {ECO:0000313|EMBL:KJB43600.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43600.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43600.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43600.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 251 350 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 406 506 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 630 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 251 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 406 506 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 534 630 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KJB43600.1}. SQ SEQUENCE 631 AA; 71855 MW; FC80EB7B05BE64FC CRC64; HLLKRTKFSS TSLGYNWLTV IITHHQDLKI SRNNGVLVGN FEKKNYEYIN HLFVIAVLHK FSKNLISELP SHSTMAYHHG RVDGYSPEPY HFFKVILEST IRDGKLGIPH KFAKDYGSKL SSPVFFEVPN GEVWELELMK LDGKLWVQNG WRKFTEHYSL ELGHFLVFRY QRNCRFHVLI FDRSASEIHY PYANNISTDM TKKPVLQCPR PPKIMRASNN GFSATKGNEK SKALERASSA IKSGNPFFLV FMQPTYVGLH SKVSCLSIPK EFSRKYLMDQ GDVILCDSSG NTWSAQYRAT LGMNGQPYVK LLNGWDAFVR DNNLQVGDVC AFELIDCIDI SFQVVIYSSK KADFHGSPAQ MEAGMTLTRS ECLEPVKARE TAFHREMKVR EKALQRALAF TSENPFFVVV LRPSYVQSHA LCISNDFTRK HFKTTLTNIG IALRLSNGKS WPAEYHQRSI GNPNARICNG WRAFVNDNKL KVGDVCVFEL VSDTQISVKV IIFQAIADED SHPSQGASEE ALGLTSQSAK APLIFRRVVL PLHLKEDCVD IPFRFVEQYF EPNVQKLILQ VADRTWPVEI TSNPRIRIAK LTSGWIKFAR ENSLREGDIC VYELDTVDNN LLKVSISKYA S // ID A0A0D2TJ00_GOSRA Unreviewed; 523 AA. AC A0A0D2TJ00; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB43695.1}; DE Flags: Fragment; GN ORFNames=B456_007G212100 {ECO:0000313|EMBL:KJB43695.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43695.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB43695.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001746; KJB43695.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 466 493 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:KJB43695.1}. SQ SEQUENCE 523 AA; 59055 MW; F47251EA40245216 CRC64; EEQNRKALAL AREGNSGHLL LLRSPCLLIT ELPVMDRRVK KEAEEIPQRT MSFAGRRLKS AGEEDFILAL STHTPKLNPS SSEKKEISKK ANALTERKQK RKKCQSETII KPAVSDCGEK KISSMKNKDV GDGRCIAEIK SPAMICAEEI QSNLEPEFPS FAKSLVRSHV GSCFWMGLPG MFCKIHLPRK DTTITLEDES GNQFHVKYYA DKTGLSAGWR QFCSAHNLLE GDVLVFQLVE PTKFKIYIIR ANDLNELDGA LGLLNLDAYT KQSDAETGPT VSKSTKRKRP KPLPLASVRK KNKRSGLQIL SCNVGQPAEQ SENDSEEVGS EVLEGFKRTE YAIQFKDITS FENILVDGLV IDPELSEDIR SKYYQLCCSQ NAFLHENIIQ GISFKFKVGI ISETVNIADA IRTCKLTTSR DEFDSWDRTL KAFELLGMNV GFLRTRLHRL VNLAFESEGA AETRRYFEAK AERDQTENEI RNLEAKLTEL KDASKTFGFE MESLQSKAET NEFRFEKEVK APW // ID A0A0D2TJ13_GOSRA Unreviewed; 1074 AA. AC A0A0D2TJ13; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G037100 {ECO:0000313|EMBL:KJB54511.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB54511.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB54511.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB54511.1; -; Genomic_DNA. DR RefSeq; XP_012444800.1; XM_012589346.1. DR GeneID; 105769009; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 947 1040 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1074 AA; 120086 MW; 7AD697D02C9DC853 CRC64; MKAPPTGFLA NPAEGDRKSI NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICVLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKHSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHENAWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDVKSQL LLGLRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANFS PFTIFYNPRA SPSEFVVPLA KYYKAMYTQV SLGMRFRMMF ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPRRVS IWEIEPVVSP FFICPPPFFR PRFPKQPGMP DDDSDVENAF KRAMPWLGDD FGFFPSTVSS NPLHNNLSID DPSKLLNFQA PVLPAPNMQF NKANPNQVNQ LPQAPTTWPQ QILQTPLNQH QQQQPQQQLQ QQQPQQPKQQ PQPQSHLLHQ QQPQPQPSPK QQQHIHQEQR QQPQQQQPLQ QQPTLPPQVI NGIVAPNQIS NQNLHQPAVY SHLQQQQLLT SNSLSTQTTL SAHMTSYPLT SLPQDTRVQQ QMEQQPNLMQ RQQQQTQLQQ SLSQRTQQQP QILQLSQQGL SEQLQLQLLQ KLQQQQQQQS AQQLLSAAGS LLQPPMLQQQ QTHQQNQPLQ QLPLSQSQVQ PLGGNGFSTS MFVQPQQLSV HQSQSQNKQL MAMRSNSGLI DGDAPPCSTL SSTNNCQVSP SNLINRSHHV PSILMTDPVV EPPSTLAQEL LSKPDIQIKH EPPTSRGLDQ SKYKSSVTDQ LEASSSGTSY CLDAGTLQHN ASLAFLEGDV QSHSRNNLPF TANIDGLAPE TLLTREYDSQ KDLQNMLSNY GGNPRDIDTE LSTAAISCQS FGVPNIPFKT GCSNDVAINE TGVLNGGLWT NQTQRMRTYT KVQKRGSVGR SIDVTRYKGY DELRHDLARM FGIEGQLEDP QSSDWKLVYV DHENDILLVG DDPWEEFVSC VQSIKILSSA EVQQMSLDGN LGNVSVPNQA CSGTENGNAW RGHYDDTSAV SFNR // ID A0A0D2TKC9_GOSRA Unreviewed; 697 AA. AC A0A0D2TKC9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G152700 {ECO:0000313|EMBL:KJB57194.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57194.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57194.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57194.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 697 AA; 76846 MW; AB2F3C5A763D2771 CRC64; MHADVETDEV YAQMTLQPLN PQEQKEAYLP AELGTSSRQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQQPP AQELIARDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHLGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLTKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPAGLPS FHGIKDDGLG MNSPLMWLQG DAGRGMPSLN FPGIGVTPWM QPRLDAASML GLQTDIHQAM AAAALQDMRA VDPSKSATTT LLQFQQPQNL SCRPAALMQS QMLQQSQPQA FLQGVEDNQH QSQTQAQTQP PLVQQQLQQQ NSFNNHQHQQ QLQHPLSQQH QQLVDHQHIS TGVSAMSQYT PASQSRSSPF QAIPSLCQQQ SFSDSNGHTM TSPIVSPLHG LLGSFPQDES SGLLNLPRSN PVITSAAWPS KRAAVEVLSS GSPQCVLPQV EQLGPTQTNI SHNSISLPPF PGRECSIDQA GGTDPQSHLL FGVNIEPSSL LLQNGMSSLR GVGSESDSTT IPFSSNYAST AGTDFSVNPA MTPSSCIEEL GFLQSPENVG QENPQTRTFV KVSCLVF // ID A0A0D2TL70_GOSRA Unreviewed; 748 AA. AC A0A0D2TL70; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G166100 {ECO:0000313|EMBL:KJB57479.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57479.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57479.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57479.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 748 AA; 81733 MW; CE8CFA7A9C2667DB CRC64; MGGLIDLNTT EDEETPSSGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR GSVVVYFPQG HLQQVSDFSG VAPAHDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE KLKEGNIEVD GEEDAEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGENGE LRLGIRRAAH IKNGTSFHSL CTQQLNRSNF ADVVHAISMK SVFSIYYNPR ASSSEFIIPV HKFWKSLDHS FSVGMRFKMR FESEDAAEGR YTGVVTGISE MDPVRWSGSK WRCLLVRWDD IDANRHNRVS PWEIEPSSSI SSSNSLLSPG SKRNRVGLPS GKPEFMVPEG IGASDFGESL RFQKVLQGQE ILGFNTHHDG ANSQIMHRSE ISRRFPCSNG SGIAAIRNIG RDTLVNPDIS YKGVGFEESF RFQKVLQGQE TSVSPPCRRG PTADDTRESD SPGAPDVGQL SGTRSGWSSL MQSYNTHSHI GPSAQVSSPS SVLKFQHASN PFANVNPIHN LNSQEKERRV HKSSSFHAPE TYGDRIPSST GGHGSRRRHL GSLDSFGPSA DTVQLGDSQP LSAQPTFRTS QELASSCKSS CRLFGFSLTE GGHDAAKEDN MVQATSSLGA GAFLPRIGEQ FNTQPPAVTN TVGSSYTKGI LQHCLKNYDE DATNDDRARR CMHAYSLL // ID A0A0D2TL75_GOSRA Unreviewed; 734 AA. AC A0A0D2TL75; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G166100 {ECO:0000313|EMBL:KJB57484.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57484.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57484.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57484.1; -; Genomic_DNA. DR RefSeq; XP_012444770.1; XM_012589316.1. DR GeneID; 105768990; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 734 AA; 80034 MW; 98F06EFDC5F0B929 CRC64; MGGLIDLNTT EDEETPSSGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR GSVVVYFPQG HLQQVSDFSG VAPAHDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE KLKEGNIEVD GEEDAEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGENGE LRLGIRRAAH IKNGTSFHSL CTQQLNRSNF ADVVHAISMK SVFSIYYNPR ASSSEFIIPV HKFWKSLDHS FSVGMRFKMR FESEDAAEGR YTGVVTGISE MDPVRWSGSK WRCLLVRWDD IDANRHNRVS PWEIEPSSSI SSSNSLLSPG SKRNRVGLPS GKPEFMVPEG IGASDFGESL RFQKVLQGQE ILGFNTHHDG ANSQIMHRSE ISRRFPCSNG SGIAAIRNIG RDTLVNPDIS YKGVGFEESF RFQKVLQGQE TSVSPPCRRG PTADDTRESD SPGAPDVGQL SGTRSGWSSL MQSYNTHSHI GPSAQVSSPS SVLKFQHASN PFANVNPIHN LNSQEKERRV HKSSSFHAPE TYGDRIPSST GGHGSRRRHL GSLDSFGPSA DTVQLGDSQP LSAQPTFRTS QELASSCKSS CRLFGFSLTE GGHDAAKEDN MVQATSSLGA GAFLPRIGEQ FNTQPPAVTN TVGSSYTKVS NLYAVRDIVY DIAL // ID A0A0D2TLG0_GOSRA Unreviewed; 885 AA. AC A0A0D2TLG0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB57639.1}; GN ORFNames=B456_009G173100 {ECO:0000313|EMBL:KJB57639.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57639.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57639.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57639.1; -; Genomic_DNA. DR RefSeq; XP_012444504.1; XM_012589050.1. DR GeneID; 105768837; -. DR KEGG; gra:105768837; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 340 441 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 567 617 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 340 441 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 885 AA; 97173 MW; 19B0CCCE3217BB4D CRC64; MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVTQPE LPSRVPYEVD LSTGIDRLNV CDRLSTPSLE KKKVEDFSER LMNGTLKPGT RDIHEKGNAG INCEEQRSPC LTKFQSSLKE EPNPQFGLAV PYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGLSM HGDAEMADPT SWSKVDKSGY IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPPNHVASVV VIEGFEFEEY GDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN SWDPERSSCS AIQELTAEQL ENLLPQCNPA ASKKMKAAKQ EMENVDALEG LDTLANLAIL GEGESLPTSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCET VKRRFRTLMM RREKKQSQKE AETTSKKQQT SLPDKVPDDD PPPCTNAENS SPKPIKIASE GSEDDPNRVK SSISPFKGQI DLNIQPEREE ELSPGSDSGS MMRLLQDATD KHLRQQSTLT SGGNSNSEVS QTQPGGGPEG EKISNSVNLG ASHQDIDRDH PVFSIKTSAP TSATG // ID A0A0D2TLI2_GOSRA Unreviewed; 629 AA. AC A0A0D2TLI2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G078800 {ECO:0000313|EMBL:KJB55491.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB55491.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB55491.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB55491.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 173 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 629 AA; 69719 MW; 3E4B4D1DA08352E7 CRC64; MEIDLNHAVN EVEKTVLCNG SCEKASACVY CLSSSSSSSS SSSSSSSCSS NSGSPPCSSS IDLELWHACA GPLTSLPKKG NVVVYFPQGH LEQLALAFPF SPLDTFDLPP QIFCKVMNVQ LLANKENDEV YTQVTLLPQP ELGGHNLGSK QLDEVGADEH ADGSPSKPTS HMFCKTLTAS DTSIHGGFSA PRRAAEDCFP RLDYKQTRPS QELVAKDLHG VEWRFRHIFR GQPRRHLLTT GWSVFVSQKN LIAGDAVLFL RGEDGELRLG IRRAVRPRTG LPDSVIAKHN SYPKVLSAVS NALSTKRVFQ VCYCPRASHA EFVIPFQKYI KSITNPMCTG ARFRMKFEMD DLPERRCNGV VTGIGDSDPY KWPNSKWRCV MVRWDDDIAS DHQERVSPWE IDPPVFPPPL SIPSPFRLKK LRTGLQTAAL DTPITGFAET NRFPKVLQGQ EICSLRSLTH KADLNLGVWA KTNHGCNSFN MNQAPNTNCY PEGLRNMYFP YNEFYKAGQE PKMFSYASKL PRGNVLFNAS SIKPGVSVDD IRKPNPPNDH KPMENIPSPG FGKKLRNQQN ECYKGNVAGC KLFGFSLTAE SPTLNSQNSG KRSCTKVSML RPKLNFNSVS YFCPTDTVT // ID A0A0D2TMS8_GOSRA Unreviewed; 1000 AA. AC A0A0D2TMS8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G196100 {ECO:0000313|EMBL:KJB58149.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58149.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58149.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58149.1; -; Genomic_DNA. DR RefSeq; XP_012444848.1; XM_012589394.1. DR GeneID; 105769031; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 200 302 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 881 965 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 200 302 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1000 AA; 110946 MW; A5A4C14007F6C03B CRC64; MGYLFLIIFQ AEVFTSEHVN VESLLCVILV RVDCKASLKG TSLLEDTPVR VMGSFVEEKM KTGVFGNGWA EATLLEEMKL LKEMQHQSGS RKAINSELWH ACAGPLVSLP QVGSLVYYFP QGHSEQVSVS TKRMMTSQVP NYPNLQSQLM CQVHNVTLHA DTETDEVYAQ MSLQPVNSEK DVFNIPDFGV NPNKHPNEIF CKTLTASDTS THGGFSVPRR AAEKLFPQLD YTMQPPSQEL VMRDIHDNTW TFRHIYRGQP KRHLLTTGWS SFVGSKRLRA GDSILFIRDE KSQLLVGIRH ANRHQATLPS SVLSADSMHI GVLAAAAQAA ANRTPFTIFY NPRSCPSEFV IPMAKYCKSV YATQVSAGMR FGMMFETEES GKRRYMGTIV GVSDLDPLRW PGSKWRNLQV EWDEPGCHDK QNRVSPWEVE TPESLFIFPS INSGLKRPYP WILGAESEWG NLINRPLLQF PENGSGNLPY PISNSYSKQL MKMMLKPHLV NHPGTFSSTS QQISAAKGSP LKEMKNVQYT SNQEPQLMQS ENLLIEKPNP SQLALDQPDP INSNLLKINA NGNPHPANEF EGQTQARCNN KKLKSEPEHS TDQLSQLNST LECTEDKLVA NTISPTICNK LSFPNNNQTP SQLQNNPCPI QSQFEPSLLQ AHQMQVSQAD ISSLSSYLPF FNTDEWATIL PSCQSIAGVY GSPGPIPLVG LQDSSAAFPE ATNPTLTTRS EVTWDSQLYN CRSSSQANEL CSFAQQDPCS FNSGSIRDLS DDSNSKSGIY SCFSNNGSTV IDPSVSNVIL EELCSLKDAK FQKPSDSLVG NFSCSQDVQS QITSASLADS RVFSRQDIPD SSGVTSSSNV DFDENGLLQK TSWQQITPRL RTYTKVQKAG SVGRSIDVTS YKNYDKLLSA IECMFGLKGL LKDPRGSGWK LVYVDHENDV LLVGDDPWEQ FVGCVRCIRI LSPTEVQQMS EEGMMLLNRV GSTVQGPISE VCNAPPKNEP // ID A0A0D2TND1_GOSRA Unreviewed; 313 AA. AC A0A0D2TND1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58374.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58374.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58374.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58374.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58374.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 35803 MW; 7E19A394E9324E3E CRC64; MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL RINKRTWRTS LPI // ID A0A0D2TND7_GOSRA Unreviewed; 372 AA. AC A0A0D2TND7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58379.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58379.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58379.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58379.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58379.1; -; Genomic_DNA. DR RefSeq; XP_012445061.1; XM_012589607.1. DR GeneID; 105769153; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 256 354 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 256 354 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 42298 MW; 86277D4E79B378AF CRC64; MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TGDFSPHPTC YNGPLTQFEK ANAIAKAQEA LTRDGFMVVM KPTHVWRRFY MAIPVAWTAK HHLKENTDII LRINKRTWRT RYNYHKNRDC GGLSGGWKCF VNDNNLIEYD VCVFEPSNIG GKPIILDVII IRVLDSAVQA PVPLTITHPA SC // ID A0A0D2TPX8_GOSRA Unreviewed; 372 AA. AC A0A0D2TPX8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77618.1}; GN ORFNames=B456_012G150900 {ECO:0000313|EMBL:KJB77618.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77618.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77618.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77618.1; -; Genomic_DNA. DR RefSeq; XP_012458780.1; XM_012603326.1. DR GeneID; 105779533; -. DR KEGG; gra:105779533; -. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 43436 MW; 760A73D7991514F5 CRC64; MPRPFFHKLI LSTTLQHKKL RIPDNFVKKF GDELSVAAAL TVPDGHVWRV GIRKADKKVW FHEGWQEFVE RYYIRAGYLL VFRYEGNSCF CVSIFSLYNS EINYQTNAFV GTQYYHRKPY PFEELEDDEC ISPALQNLFS RSKVNNCMNW SGEINFRALK GMNSQSFRGA VLSKPNKPGR KKQKFDHAEP DSSVGREYDV YTNFRLYESA SARKRTVTTE ERERAINTAK SFEPMNPFCR VVLRPSYLYR GCIMYLPSCF AEKYLSGVSG FIKLQLPDGR QWPVRCRYRG GKAKFSQGWY EFTLENNLGE GDVCIFELLR SREFVLKVTV FRVRESAPVS MKCRPELNQL TYSEHTLPDD VKPIRVDKSM PF // ID A0A0D2TQ26_GOSRA Unreviewed; 326 AA. AC A0A0D2TQ26; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77683.1}; DE Flags: Fragment; GN ORFNames=B456_012G151000 {ECO:0000313|EMBL:KJB77683.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77683.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77683.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77683.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KJB77683.1}. SQ SEQUENCE 326 AA; 37852 MW; 66B80B72B83A5730 CRC64; KYQTIKEYIK ILRIWSPEFL FFIFVSDDQR KATMSQPVGP SLPLNNSSCI FYKLIVASIL QDKKLRIPNK FVKKFGDELS SVATLTVPGG RQWLVELREE DKRIWLDNGW NTFVEYYSIC IGYFVVFKYE GNSHFGVHVY NLKSSEINYL SNNSREPGDF AEITGSSSYF LVDKDVDESL DHEKKKYKIS TGLHQENELR DLRATFQSTL DKGIQFNGVE LMSIGDEGGP CFSNETLRYT IKQEVEPSMD EQEPFRKFKV KEELPTLDSP RVLRRRRDVT TEEKQGAFHA ASMFKPDNPF CRIILRPSYV YKGVLLVSYV TQTRPF // ID A0A0D2TQR7_GOSRA Unreviewed; 150 AA. AC A0A0D2TQR7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77938.1}; GN ORFNames=B456_012G168800 {ECO:0000313|EMBL:KJB77938.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77938.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77938.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77938.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 150 AA; 17268 MW; 8E82EA51CA8BE16F CRC64; MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRT KGYLKPVLSV GWKMFVVANE LKVGDRITMY KDEDGFSHYM VEVEKPPAGN QHGTLPNSPA PSFIHHEPDE TTVEYRREVP KNTTSLILHR // ID A0A0D2TR79_GOSRA Unreviewed; 698 AA. AC A0A0D2TR79; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G166100 {ECO:0000313|EMBL:KJB57481.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57481.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57481.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57481.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75926 MW; FFDB3CB73FAA4535 CRC64; MGGLIDLNTT EDEETPSSGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR GSVVVYFPQG HLQQVSDFSG VAPAHDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE KLKEGNIEVD GEEDAEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGENGE LRLGIRRAAH IKNGTSFHSL CTQQLNRSNF ADVVHAISMK SVFSIYYNPR YTGVVTGISE MDPVRWSGSK WRCLLVRWDD IDANRHNRVS PWEIEPSSSI SSSNSLLSPG SKRNRVGLPS GKPEFMVPEG IGASDFGESL RFQKVLQGQE ILGFNTHHDG ANSQIMHRSE ISRRFPCSNG SGIAAIRNIG RDTLVNPDIS YKGVGFEESF RFQKVLQGQE TSVSPPCRRG PTADDTRESD SPGAPDVGQL SGTRSGWSSL MQSYNTHSHI GPSAQVSSPS SVLKFQHASN PFANVNPIHN LNSQEKERRV HKSSSFHAPE TYGDRIPSST GGHGSRRRHL GSLDSFGPSA DTVQLGDSQP LSAQPTFRTS QELASSCKSS CRLFGFSLTE GGHDAAKEDN MVQATSSLGA GAFLPRIGEQ FNTQPPAVTN TVGSSYTKVP PIRSCVYTGF WSLMNMML // ID A0A0D2TRB4_GOSRA Unreviewed; 432 AA. AC A0A0D2TRB4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB57531.1}; GN ORFNames=B456_009G168500 {ECO:0000313|EMBL:KJB57531.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57531.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57531.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57531.1; -; Genomic_DNA. DR RefSeq; XP_012445413.1; XM_012589959.1. DR GeneID; 105769366; -. DR KEGG; gra:105769366; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 201 302 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 201 302 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 48838 MW; DFF2BCD5A762FF64 CRC64; MENSYMPFLP TTSTATNTIL RQPNMGCSQN SEFSIYEPMN SKIFSSKPIT TAPNSQFHHP TQFMAPYQSL QLPYRHPIEQ TDHSLAYPFF LGQNGIEFGS IIASNGAQHG SCFMQTDGIS MAEERRMLDP YGSKAARIKR KLARQRSLSL QRNASSGATA QVDKRRLNSS GADNDVNINN DTKRDLYMFC TPDNKRLRVL LRKELKNSDV GSLGRIVLPK REAELNLPTL CDKEGIQVVL KDVYSHQSWT LKYKFWSNNK SRMYVLENTV DFVKQNGLGI GDFLILYEDE GKNLYFSVIK VERVAAAEPS NNQPYDSQNI YTGMPFTGPL RDEEETCLEL LIEQLKHTEH EESNDLMTLA MDATYSHGPP AADESQHFVS DANVEITATE LQTSSTLLRG KARSVDEIQI NFDDCYSGLD MLPDVNLYNF LL // ID A0A0D2TT17_GOSRA Unreviewed; 240 AA. AC A0A0D2TT17; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58376.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58376.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58376.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58376.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58376.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 240 AA; 27351 MW; 0AFE0CB6B95F3BC8 CRC64; MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TGRVEALLET FSVHKTCFPR // ID A0A0D2TT21_GOSRA Unreviewed; 347 AA. AC A0A0D2TT21; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58381.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58381.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58381.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58381.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58381.1; -; Genomic_DNA. DR RefSeq; XP_012445062.1; XM_012589608.1. DR GeneID; 105769153; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 39507 MW; C305BFE62A5B688A CRC64; MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL RINKRTWRTR RKTYHPGCYH HSGSGLSSSS TSTSDHNTPC LLLNRSS // ID A0A0D2TUM1_GOSRA Unreviewed; 351 AA. AC A0A0D2TUM1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB79248.1}; GN ORFNames=B456_013G040000 {ECO:0000313|EMBL:KJB79248.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB79248.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB79248.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB79248.1; -; Genomic_DNA. DR RefSeq; XP_012462594.1; XM_012607140.1. DR GeneID; 105782416; -. DR KEGG; gra:105782416; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 341 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 341 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 40264 MW; 32CF30BFC0C3CB9A CRC64; MPRPFFHKLI LSTTLQEKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKVW FQEGWQEFLE RYYIRVGYVL VFRYEGNSAF SVSIFNLYNS EINYQTNALV GTQYNHGKQY PFEQLEDDEC ISPALQNLFG GSKLNNCINW GGDANLQTSK GVNNQPIRVK LHTSGSGAMK PEPKKRGRKR KFDPNVQDSS AGREDDVDMR FRCYESASAR KRTVTAEERE RAINAAKAFE PTNPFCRVVL RPSYLYRGCI MYLPSCFAEK HLSGVSGSIK LQLPDGRQWS VRCLYKGGKA KFSQGWYEFT LENNLGEGDV CVFELLRSRE FVLKVTVFRV MESGGLMHRS Q // ID A0A0D2TUN6_GOSRA Unreviewed; 276 AA. AC A0A0D2TUN6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB79293.1}; GN ORFNames=B456_013G042700 {ECO:0000313|EMBL:KJB79293.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB79293.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB79293.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB79293.1; -; Genomic_DNA. DR RefSeq; XP_012462975.1; XM_012607521.1. DR GeneID; 105782649; -. DR KEGG; gra:105782649; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 6 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 276 AA; 31914 MW; 871934DEF4B826CC CRC64; MAESELSYEE TRKRRLEENK KRMEELNLKS LSQALKSKSV KSSPAKPRTP RKQVELTAVR RSSRVADKPK PDYKDVPLEP FERLRRGYNR GHSHRDLFNR VYASAEERAY AIERAEHLES TLDSEYPSFV KPMLQSHVTG GFWLGLPNQF CKKNLPHHDV MVTLVDEEGE EFVTKYLADK TGLSGGWRGF SIDHNLVDGD ALVFQLVAPT EFKVYIIRAY ESDDNGGGED EKGGEDEREE ENREDEKEEK REDDGKEADV EPDVQNRRSK RIRARK // ID A0A0D2TYU4_GOSRA Unreviewed; 621 AA. AC A0A0D2TYU4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48485.1}; GN ORFNames=B456_008G071200 {ECO:0000313|EMBL:KJB48485.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48485.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48485.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48485.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 343 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 505 605 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 343 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 505 605 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 621 AA; 70871 MW; CDE474ADD8FAB07D CRC64; MPKSLKENNN SMFTPKTPHF FKIILDANIR DKKLEIPGKF VRKYGNGLSN SVLLTVPSGD TWHVELTKSD GIVWLQNGWQ EFSEYFSLKY GHLLVFKYEG NGKFLVLIFD TSASEIEYPC KSHIEDQESD DQMCLKPVKE EPKDDVCDKP LHGTPSCKET KRKKSRSLCS NAEYLCKSYI DDHKSDDQLC LKPVKEEAKD GVYDETLYET PPCKKARRTK SQSQCSKIEY PCKSHIEDHK SEDQVSLKPV KEEAKDDVCD KTLYETPPCK ETRKKKPQSQ CSKPRKKLKT AQKDKNRKDC EDASTDEEGL QTKVPRDGRA FGAIEYDKAL QRAFSFESEN PFFLVTMQPS YINPGRKMCI PKNFTMKFLT RDLGDLTLCT SDGRTWSAQY LCYMTRNKYT KATIHIGWRQ FMLDNNLEAG DVCVFELISQ TEIMLKVIIY RVRQDASCSS PLGGINSLEN GDNVSSSTPG STESKHHCSI RSLTPHEKAR AIQKASNFKS KNPFFKVVMQ PRYLTIRCSL SIPYKFVNQY LDEEKEEAIL QVSDGRTWVV KFAVKVVTGG QHKAEFSHTW RAFARDNNLE VGDVCVFELI NRNENSFKVS IFSEAPGANS SLSPQGLYES I // ID A0A0D2TYV0_GOSRA Unreviewed; 336 AA. AC A0A0D2TYV0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB48490.1}; GN ORFNames=B456_008G071500 {ECO:0000313|EMBL:KJB48490.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48490.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB48490.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB48490.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 37902 MW; F4D000C8B9AF8013 CRC64; MAHLFTNHAL HIRKYVTAAC TIAAACIQAV CTQQNHHNSR HFNKNITATW LAIFQHKYYS NPKNKDRNAY LYGGWREFVE DNHLNVGDVC VFELIKLPEI LMKVVINLLV ENTSKACDSL AFGSIDSRVN TRSLVSDAEP TCQQSLCPSS SGESKDLTDS YIETLDDSPL DQETKKLTPR SIQPCELKYS AEDDSGRTSG AQRCLKPDPV YQKQRACIGG GAFRTSNSSF SVVIHPSYVG SCSALHIPKE FGKRYLKNSG EMMLRIEDGK TWTVEYERRA RNKGRKAEFK SNSWGQFTID NELEVGDVCV FELINENGNL LEVAFRKLYS SKLINY // ID A0A0D2TZE7_GOSRA Unreviewed; 241 AA. AC A0A0D2TZE7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB62054.1}; GN ORFNames=B456_009G399000 {ECO:0000313|EMBL:KJB62054.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB62054.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB62054.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB62054.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 27142 MW; 1EA1C6F0EF3CB3E6 CRC64; MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PSMFLSSIHA PRHFNLNHDD DEELDDQTST LNTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGDSSDKG LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF IGWRRRGAAV VVAPAATDGG NAMMENDSGG GGGGNGGWNN RGLYQRYPHL GHIQGWCGYL E // ID A0A0D2U0G1_GOSRA Unreviewed; 882 AA. AC A0A0D2U0G1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G097200 {ECO:0000313|EMBL:KJB49005.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49005.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49005.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49005.1; -; Genomic_DNA. DR RefSeq; XP_012437325.1; XM_012581871.1. DR GeneID; 105763606; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 776 860 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 522 546 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 882 AA; 98086 MW; 8A42AA253B0ABCC8 CRC64; MRLSSSGFNQ QTEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKNV FLLPAELGTP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELVA RDLHENEWKF RHVFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYY TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPGRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS ALPSFHAFKD GDMNINSQMM WLQGGIGDQG LQSLNFQGFG VAPWMQPRLD TSSIQGVQPD LYQAMAAAAF QEMRTVDSSK LGSQSLLQFQ QPQSMSNGSP AIIQRQMLQQ SQTQNAFLQG FQENQTTSQV QLLQQLQRSN SYNNHRQQQQ QQQQQQRQQQ QQQQQSQQMQ QIPQFSDQQQ ISNLIPAFPK ASGSQAQSSS LPTAASECQQ PTFSDPLGNS LAISNASSMQ SILGSLSHAG ASHLHNLKGS NPIVSSSLLS KPVAIEPQLS SETANYILPQ VEHLGMVQSN VLSNVLPPFP GREYSAYQSS TDTQNNFLFG VSIDSSSLVL QHGMTNLKNI GNENDSLSLP YAASNFTSAS GTDFPLNSDM TTSSCVDESG YLQSSEYVDQ VNPPTGTFVK VHKLGSFGRS LDISKFSSYN ELRCELARMF GLEGQLEDPQ RSGWQLVFVD RENDILLLGD DPWQEFVNNV WYIKILSPLE VQQMGKEGLN PAASDPSQTR HQ // ID A0A0D2U249_GOSRA Unreviewed; 661 AA. AC A0A0D2U249; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G126200 {ECO:0000313|EMBL:KJB49575.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49575.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49575.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49575.1; -; Genomic_DNA. DR RefSeq; XP_012437774.1; XM_012582320.1. DR GeneID; 105763914; -. DR KEGG; gra:105763914; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 638 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 73980 MW; A178AD922B5193EF CRC64; MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPEREV HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMNQATPT QELTAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQN MHLGVLATAA HAVMTQTLFV VYYKPRTSQF IIGVSKYLEA INNRSSVGMR FKMRFEGEDS PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIEP FSASASINLI QPAVKSKRPR PVYILASDTT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM RQNEADAGYN TRARLENAWP PSSLVNVSLN FFRNPADASP VELRTSNDVM RDQVEKGKKL EISTGCRLFG FNLTNSNSAV SGTVIAPSHI DENPETFQSP KQQKQNASET STKEIKAKHG TTSSMRTRTK VQMQGIAVGR AIDLTVLKGY DDLINELEKM FDIEGELRHR TKWSVVFTDN EGDMMLVGDD PWVGFCKMVR KIFIYSVDEV KKINGRCKFQ ASSLEGEGTV VSLGLEHRSG T // ID A0A0D2U254_GOSRA Unreviewed; 633 AA. AC A0A0D2U254; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_008G126200 {ECO:0000313|EMBL:KJB49580.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB49580.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB49580.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001747; KJB49580.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 518 610 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 633 AA; 70777 MW; F1AB8C21FEF56CDE CRC64; MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPEREV HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMNQATPT QELTAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQN MHLGVLATAA HAVMTQTLFV VYYKPRTSQF IIGVSKYLEA INNRSSVGMR FKMRFEGEDS PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIEP FSASASINLI QPAVKSKRPR PVYILASDTT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM RQNEADAADA SPVELRTSND VMRDQVEKGK KLEISTGCRL FGFNLTNSNS AVSGTVIAPS HIDENPETFQ SPKQQKQNAS ETSTKEIKAK HGTTSSMRTR TKVQMQGIAV GRAIDLTVLK GYDDLINELE KMFDIEGELR HRTKWSVVFT DNEGDMMLVG DDPWVGFCKM VRKIFIYSVD EVKKINGRCK FQASSLEGEG TVVSLGLEHR SGT // ID A0A0D2U4H1_GOSRA Unreviewed; 334 AA. AC A0A0D2U4H1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB82608.1}; GN ORFNames=B456_013G204200 {ECO:0000313|EMBL:KJB82608.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB82608.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB82608.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB82608.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 95 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 95 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 38083 MW; 20B57B25AC161A9A CRC64; MSSVILSGEA NINSDVSDST STTHQANKRQ RCGGKGNSSQ YKGVMRQKNG QWGAQLYTNH TRIWLGTFKS EIDAAMAYDS AAIKFRTGDT HRNFPWNEIT IEEPTFLSHY SAEAVLSMIR DGSYQYKFMD FIKAHSGNTK LNLVGTYSNE GLICKQLFQK ELTPSDVGQL NRLVIPKKYA VKYFPPVSGT EKENADVGHR KTNDVELIFY DKFMRIWKFR YCYWNSSQSF VFTRGWNRFL KEKELKANDV VSFFVCECRK ENEVRRFCMI DANKSGNGGT FVSANNVHVG IEVDLQLRLG HCYLVQEEQG SMAAAKPKQD DKTEGFKLFG MQIS // ID A0A0D2U6M7_GOSRA Unreviewed; 356 AA. AC A0A0D2U6M7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83463.1}; GN ORFNames=B456_013G249100 {ECO:0000313|EMBL:KJB83463.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83463.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83463.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83463.1; -; Genomic_DNA. DR RefSeq; XP_012461694.1; XM_012606240.1. DR GeneID; 105781732; -. DR KEGG; gra:105781732; -. DR KO; K09287; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 102 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 102 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 356 AA; 40237 MW; F084CC216A9C4D3F CRC64; MVEDDSSTVL NTKLTVLAAE TSDSGNSGYK FRPGKRSRYD QIGSLPKFKG VVPQQNGHWG AQIYANHQRI WLGTFKSESE AAMAYDSAAV KLRSGDSHRN FPWTEQNIQE PDFQSLYSTE DVLNMIRDGS YQAKFEDFVK ILSKRDGKLN TSNNVNKKLV HGDKQFPCMQ LFQKELTPSD VGKLNRLVIP KKYAVKYFPH ICETDRQVSA AGGGVEDIEL VFYDKLMVTW KFRYCYWKSS QSFVFTRGWS RFVKEKKLNE KDTVTFYSCE CSGEDQNGKS FFLIDVNYNG ENGLGSSAAA LEEEDRRDDD LAVGLEFNSG STTKGYSNKA IEGFENGGRN VKQKSVTLFG VQINLL // ID A0A0D2U800_GOSRA Unreviewed; 393 AA. AC A0A0D2U800; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83968.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83968.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83968.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83968.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83968.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 393 AA; 44819 MW; 04616C140705AFB3 CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL NDSREPGHDK HLKDVEDGAF AQILRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDIDEYK SLGKFIVKEE LPAMNSPRSD HKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK GIFLHIPRCF ALRYLNGVDG IVTLQVSEGK KWPVRCIYGQ SSWKFSKGWA EFVLDNNLDE GDVCVFELIS TKEIVLKVTI FRVLEDGVAV NQL // ID A0A0D2U804_GOSRA Unreviewed; 305 AA. AC A0A0D2U804; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83973.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83973.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83973.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83973.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83973.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 34790 MW; E19E246EAF6C99C1 CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL NDSREPGHDK HLKDVEDGAF AQILRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDEYKSL GKFIVKEELP AMNSPRSDHK KRRDATAEGK QIALRAAAMF KPDNPFCRVI LRPSYVYKGI FLVSP // ID A0A0D2U806_GOSRA Unreviewed; 189 AA. AC A0A0D2U806; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB64994.1}; GN ORFNames=B456_010G075000 {ECO:0000313|EMBL:KJB64994.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB64994.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB64994.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001749; KJB64994.1; -; Genomic_DNA. DR RefSeq; XP_012448606.1; XM_012593152.1. DR GeneID; 105771749; -. DR KEGG; gra:105771749; -. DR Proteomes; UP000032304; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 157 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 189 AA; 21949 MW; C5D46F60094957C5 CRC64; MEQKKAKKID HEEYKEIYGA ALCISSFKHL ILSPESAMNL QASLQATIDI PRVPSLNGLI GRCSQPFEKQ LTETDVNSKQ CRLSINKVDV ENAVMPLLKE EEDVEKGIRV KVYDANGKEY PMTLKLWAHK LHVLKEGWIE FCTDHALLAH QDFLKLWVFR NLHTQDLCFF ITSRRLQEFQ PIKKRRLNA // ID A0A0D2U8Z8_GOSRA Unreviewed; 613 AA. AC A0A0D2U8Z8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=B456_010G091300 {ECO:0000313|EMBL:KJB65354.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB65354.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB65354.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001749; KJB65354.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 613 613 {ECO:0000313|EMBL:KJB65354.1}. SQ SEQUENCE 613 AA; 67798 MW; A0A8F6D16E4F0113 CRC64; MKAPPNGFMA NSAEGERKSI NSELWHACAG PLVSLPPVGS LVIYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDIGLKQSR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGTRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KFNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVITP FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDAPSSI FPGLSLVQWM SMQQNNQFPA AQSGFFPSMV SSNLLHNSLG TDDPAKLLNF QAPALPASNM QFNKANTNQI NQLTQAPMTW PQQQQLQQLL QAPLNQQQQS LQQLQRQLPQ PPQQQPQPHL FHQQQPQPQP QPQPQSQSQS QSQSQSQSQS QSQSQPQPQP ATATATATAT STAAAAAAAA ATTSKKTTDA ITAAAATSIP PFS // ID A0A0D2UET7_GOSRA Unreviewed; 348 AA. AC A0A0D2UET7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB54095.1}; GN ORFNames=B456_009G020200 {ECO:0000313|EMBL:KJB54095.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB54095.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB54095.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB54095.1; -; Genomic_DNA. DR RefSeq; XP_012442726.1; XM_012587272.1. DR GeneID; 105767694; -. DR KEGG; gra:105767694; -. DR KO; K09287; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39747 MW; 0BF2B7C912075E8C CRC64; MEEEILSVIS SGGGNTNSDV SNSISTTHQA NKRQRCGDKG NSSQFKGVMR QKNGKWGAQL YSNHTRIWLG TFKTEIDAAV AYDSATIKFC PGDTHRNFPW NEITIEEPKF LSHYSAEAVL SMIRDGSYQF KFMDFIKACS RSTKPNTAIK SVGTYSNEGL ICKQLFQKKL TPSDVGKLNR LVIPKRYAVK YFPSIFWTEK ENADVADSKT NDVELVFYDK FMRIWKFRYC YRNSSQSFVF TRGWNRFLKE KKLKANDVVS FFVCECRKEN EVQRFCMIDA NKSGNGGTFV AVNNIHVGIE VDLQLRLGHY YPIGDEKHVQ EEQGSMAAAK PKQDDKTEGF KLFGMQIN // ID A0A0D2UI98_GOSRA Unreviewed; 611 AA. AC A0A0D2UI98; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G078800 {ECO:0000313|EMBL:KJB55490.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB55490.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB55490.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB55490.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 173 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 611 AA; 67693 MW; D8A2235078FA7F0E CRC64; MEIDLNHAVN EVEKTVLCNG SCEKASACVY CLSSSSSSSS SSSSSSSCSS NSGSPPCSSS IDLELWHACA GPLTSLPKKG NVVVYFPQGH LEQLALAFPF SPLDTFDLPP QIFCKVMNVQ LLANKENDEV YTQVTLLPQP ELGGHNLGSK QLDEVGADEH ADGSPSKPTS HMFCKTLTAS DTSIHGGFSA PRRAAEDCFP RLDYKQTRPS QELVAKDLHG VEWRFRHIFR GQPRRHLLTT GWSVFVSQKN LIAGDAVLFL RGEDGELRLG IRRAVRPRTG LPDSVIAKHN SYPKVLSAVS NALSTKRVFQ VCYCPRASHA EFVIPFQKYI KSITNPMCTG ARFRMKFEMD DLPERRCNGV VTGIGDSDPY KWPNSKWRCV MVRWDDDIAS DHQERVSPWE IDPPVFPPPL SIPSPFRLKK LRTGLQTAAL DTPITGFAET NRFPKVLQGQ EICSLRSLTH KADLNLGVWA KTNHGCNSFN MNQAPNTNCY PEGLRNMYFP YNEFYKAGQE PKMFSYASKL PRGNVLFNAS SIKPGVSVDD IRKPNPPNDH KPMENIPSPG FGKKLRNQQN ECYKGNVAGC KLFGFSLTAE SPTLNSQNSG SQARQLGWKS H // ID A0A0D2UJW5_GOSRA Unreviewed; 669 AA. AC A0A0D2UJW5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G107800 {ECO:0000313|EMBL:KJB56150.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB56150.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB56150.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB56150.1; -; Genomic_DNA. DR RefSeq; XP_012443597.1; XM_012588143.1. DR GeneID; 105768286; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 669 AA; 74213 MW; 8C61B023B028F43A CRC64; MRKEAEKSLD PQLWHACAGS MVQIPPVNSK VFYFPQGHAE HSLSPVDFSS SPPIPALVLC RVASVKFLAD AETDEVYAKI MLVPLPNTEP DLENVAVLGG GSDNVEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYTADPPVQT VIARDVHGEI WKFRHIYRGT PRRHLLTTGW SSFVNHKKLV AGDSIVFLRA ENGELCVGIR RAKRGNDTGA ESGLGNGNYV SPYGGFSGFL KEDESKITRK GNPRGKGKVR AEAVVEAVGL AANGQPFEIV YYPRASTPEF CVKASVVRAA MRVPWCSLMR FKMAFETEDC SRISWFMGTV SSVHIADPLR WPNSPWRLLQ VTWDEPDLLQ NVERVSPWLV ELVPNMLPVH LSPFSTVTPR KKLRLPEHLD FPLVEQFPMP SFSGHPLRSS NPLCCLSDNA PAGIQGARHA QVRLSSSDPH LNKLKSGLFP SGFQLFDPQA RVPNGISMTK HTDSNDDNLS CLLTVGNSSP KKKSENGKRH QFLLFGQPIL TEQQLSRSCS TGVKTALENE DKRKDYSNGS ESALENQLSP EKSFTTRLLW QQDYQAPEPG SATGHCKVFL ESEDVGRTLD LTVLGSYEDL YMRLANMFGR ERSEMLGHVL YRDATGAVKQ TGDEPFSTFM KTVKRLNIRM DSRNDTDGR // ID A0A0D2ULL9_GOSRA Unreviewed; 685 AA. AC A0A0D2ULL9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G030900 {ECO:0000313|EMBL:KJB69569.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69569.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69569.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69567.1; -; Genomic_DNA. DR EMBL; CM001750; KJB69569.1; -; Genomic_DNA. DR RefSeq; XP_012456157.1; XM_012600703.1. DR GeneID; 105777433; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 75044 MW; EB84851C9E318272 CRC64; MGCLIDLNAT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEQTEQKL QEVDGEDEDA EADMKLATPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYDQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI RRAAQIKNGA SFLSLCSKQL NRSTFADAVH AISMKSVFSI YYNPRASSSE FIVPVCKFRK SLDRSFSVGM RFKMRFETEN APERRSSGLI TGTSDLDPVR WPGSKWKCLS VRWDDIDANK HGRVSHWEIE LSGSISSSNC LLSPCSKRNR VGLPSGKPEF MVPDGIGAPD FGEPLRFQKV LQGQEILGFS TLYNSADSHN MHWSEIRRCF PGSNGSGIAT IGNVGRDPPL NPVISYKGVG FGESFGFHKV LQGQEIFLSS LYRRGSTMEE TRGNDSAGLP NVGQMSGTRS GWSSSMQGYN THSPVQPSAQ VSSPSSVLMF QQASNPVPNF NPTRNFNQEM ERGVSSFRVP ETYGAKLLSS SISEHDSQPL AAQPSFGTNQ ELASCKSSCR LFGFSLTEGD LDATKEDNMV HATLSLGRGS LLPCIGENFH PNPPAVASTV WKQLY // ID A0A0D2UMF8_GOSRA Unreviewed; 815 AA. AC A0A0D2UMF8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G048200 {ECO:0000313|EMBL:KJB69884.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69884.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69884.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69884.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 815 AA; 89760 MW; 6FBB07BF322CE7F0 CRC64; MRLSSAGFNP PNQEDTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG TPGKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL IARDLHDNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV ITLSKYVKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG VSPWMQSRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GTASLQFQQP QNGPCRPAAL VQPQMLQQTL PQAILQGVED NQHQSQPHLL QQQLQHQNSF NNQQQHQQQP LFNNQQQQQP QHSMSQQHQQ LVDHQQIPSP VSAMSQYASA SQSQSSPLQS IPSLGQQQSF SDSNGNPVTS PVVSPLHSLL GSFPQDESSN LLNLPRTNPI MTTSAWPSKR VAVDVLSSGS PQCVLPQVEQ LGPSQTNMSQ NSISLPPFPG RECSIDQGGT DSQSHLLFGV NIEPSSVLMQ NGMSGLRGVG TDSDSTSIPF FSNYMSTAGN DFSVNPAMTP SSCIDESGFL QSQENVGQSN PQTRTFVKGV REQCLVYQDT FPTGSAANGQ TRPGASKLCA SSEAL // ID A0A0D2UMK3_GOSRA Unreviewed; 904 AA. AC A0A0D2UMK3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G152700 {ECO:0000313|EMBL:KJB57190.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57190.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57190.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57190.1; -; Genomic_DNA. DR RefSeq; XP_012445215.1; XM_012589761.1. DR GeneID; 105769253; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 771 855 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 904 AA; 99726 MW; CE9D70A18565809B CRC64; MRLSSAGFSP QAPEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE EVDVHVPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLNPQEQKE AYLPAELGTS SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHLGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LTKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGDRQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPA GLPSFHGIKD DGLGMNSPLM WLQGDAGRGM PSLNFPGIGV TPWMQPRLDA ASMLGLQTDI HQAMAAAALQ DMRAVDPSKS ATTTLLQFQQ PQNLSCRPAA LMQSQMLQQS QPQAFLQGVE DNQHQSQTQA QTQPPLVQQQ LQQQNSFNNH QHQQQLQHPL SQQHQQLVDH QHISTGVSAM SQYTPASQSR SSPFQAIPSL CQQQSFSDSN GHTMTSPIVS PLHGLLGSFP QDESSGLLNL PRSNPVITSA AWPSKRAAVE VLSSGSPQCV LPQVEQLGPT QTNISHNSIS LPPFPGRECS IDQAGGTDPQ SHLLFGVNIE PSSLLLQNGM SSLRGVGSES DSTTIPFSSN YASTAGTDFS VNPAMTPSSC IEELGFLQSP ENVGQENPQT RTFVKVYKSG SFGRSLDISK FSSYNELRSE LARMFGLEGQ LEDPLRSGWQ LVFVDRENDV LLLGDDPWPE FVNSVWCIKI LSPQEVQQMG KRGLELLNSV PVQRLLNGSC DDYASQQDSR NLSSGIASVG SLDY // ID A0A0D2UML0_GOSRA Unreviewed; 820 AA. AC A0A0D2UML0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G152700 {ECO:0000313|EMBL:KJB57195.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57195.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57195.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57191.1; -; Genomic_DNA. DR EMBL; CM001748; KJB57195.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 687 771 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 820 AA; 90643 MW; A56A8C4FF7B4B7E8 CRC64; MHADVETDEV YAQMTLQPLN PQEQKEAYLP AELGTSSRQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQQPP AQELIARDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHLGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLTKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPAGLPS FHGIKDDGLG MNSPLMWLQG DAGRGMPSLN FPGIGVTPWM QPRLDAASML GLQTDIHQAM AAAALQDMRA VDPSKSATTT LLQFQQPQNL SCRPAALMQS QMLQQSQPQA FLQGVEDNQH QSQTQAQTQP PLVQQQLQQQ NSFNNHQHQQ QLQHPLSQQH QQLVDHQHIS TGVSAMSQYT PASQSRSSPF QAIPSLCQQQ SFSDSNGHTM TSPIVSPLHG LLGSFPQDES SGLLNLPRSN PVITSAAWPS KRAAVEVLSS GSPQCVLPQV EQLGPTQTNI SHNSISLPPF PGRECSIDQA GGTDPQSHLL FGVNIEPSSL LLQNGMSSLR GVGSESDSTT IPFSSNYAST AGTDFSVNPA MTPSSCIEEL GFLQSPENVG QENPQTRTFV KVYKSGSFGR SLDISKFSSY NELRSELARM FGLEGQLEDP LRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPQ EVQQMGKRGL ELLNSVPVQR LLNGSCDDYA SQQDSRNLSS GIASVGSLDY // ID A0A0D2UMY4_GOSRA Unreviewed; 888 AA. AC A0A0D2UMY4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB69406.1}; GN ORFNames=B456_011G022400 {ECO:0000313|EMBL:KJB69406.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69406.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69406.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69406.1; -; Genomic_DNA. DR RefSeq; XP_012455056.1; XM_012599602.1. DR GeneID; 105776734; -. DR KEGG; gra:105776734; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 342 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 569 619 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 342 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 888 AA; 97495 MW; 7D74DB0C8BC25924 CRC64; MTSTSVATSS SRICFNSVCN DLKSERPRKG WQLRTGELAE LCDRCASIYD EGRFCDAFHL NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS SLPERFKDCS AKGWSQLTGS GPAPWRQAPG LFNSSTSQPE LHSRVPYEVD LSTGIDRLNV SERLSIPSLE KKKNEDFPER LMNGPLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK EDSSNPPFGL AVPYTSIDEA NGQMGVSGTH LRPNPQPSLA KQFHSNPHNG LDSSGETQMR NGRPRADGRG RNQLFPRYWP RFTDQDLQQI SADSNSIITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN VVSIEGFEFE EYEDAPVLGK PTIFATDKSG EKIQWAQCED CFKWRRLPSD VLLPSKWTCS SNSWDPERSS CSATQELTAE ELENLLPHCN LAASKKMKAA KQESENVDAL EGLDTLANLA ILGEGDVLPA SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCQ TVKRRFRTLM LRREKKQSQK EADATRKKQQ PSLPDKVVGD EPLPCTTSAG NSSLNPEKVV SENLDDDTNR LKSSSSPFKG QIDLNIQPER EEELSPGSDS GGTMRLLQDA TDKYHRQQSI LSSSGNSNIE VTQTQPGSGT ELGKINSSID LRASHRDADM DHPAIFPIKT FAPTSATG // ID A0A0D2UNB1_GOSRA Unreviewed; 687 AA. AC A0A0D2UNB1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G030900 {ECO:0000313|EMBL:KJB69566.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69566.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69566.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69564.1; -; Genomic_DNA. DR EMBL; CM001750; KJB69566.1; -; Genomic_DNA. DR RefSeq; XP_012456155.1; XM_012600701.1. DR GeneID; 105777433; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 687 AA; 75235 MW; 623E716E1E59C1C4 CRC64; MGCLIDLNAT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEQTEQKL QEVDGEDEDA EADMKLATPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYDQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI RRAAQIKNGA SFLSLCSKQL NRSTFADAVH AISMKSVFSI YYNPRASSSE FIVPVCKFRK SLDRSFSVGM RFKMRFETEN APERSCRSSG LITGTSDLDP VRWPGSKWKC LSVRWDDIDA NKHGRVSHWE IELSGSISSS NCLLSPCSKR NRVGLPSGKP EFMVPDGIGA PDFGEPLRFQ KVLQGQEILG FSTLYNSADS HNMHWSEIRR CFPGSNGSGI ATIGNVGRDP PLNPVISYKG VGFGESFGFH KVLQGQEIFL SSLYRRGSTM EETRGNDSAG LPNVGQMSGT RSGWSSSMQG YNTHSPVQPS AQVSSPSSVL MFQQASNPVP NFNPTRNFNQ EMERGVSSFR VPETYGAKLL SSSISEHDSQ PLAAQPSFGT NQELASCKSS CRLFGFSLTE GDLDATKEDN MVHATLSLGR GSLLPCIGEN FHPNPPAVAS TVWKQLY // ID A0A0D2UNF1_GOSRA Unreviewed; 738 AA. AC A0A0D2UNF1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G166100 {ECO:0000313|EMBL:KJB57480.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57480.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57480.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57480.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 738 AA; 80556 MW; E3C86560354E9CD7 CRC64; MGGLIDLNTT EDEETPSSGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR GSVVVYFPQG HLQQVSDFSG VAPAHDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE KLKEGNIEVD GEEDAEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGENGE LRLGIRRAAH IKNGTSFHSL CTQQLNRSNF ADVVHAISMK SVFSIYYNPR ASSSEFIIPV HKFWKSLDHS FSVGMRFKMR FESEDAAEGR YTGVVTGISE MDPVRWSGSK WRCLLVRWDD IDANRHNRVS PWEIEPSSSI SSSNSLLSPG SKRNRVGLPS GKPEFMVPEG IGASDFGESL RFQKVLQGQE ILGFNTHHDG ANSQIMHRSE ISRRFPCSNG SGIAAIRNIG RDTLVNPDIS YKGVGFEESF RFQKVLQGQE TSVSPPCRRG PTADDTRESD SPGAPDVGQL SGTRSGWSSL MQSYNTHSHI GPSAQVSSPS SVLKFQHASN PFANVNPIHN LNSQEKERRV HKSSSFHAPE TYGDRIPSST GGHGSRRRHL GSLDSFGPSA DTVQLGDSQP LSAQPTFRTS QELASSCKSS CRLFGFSLTE GGHDAAKEDN MVQATSSLGA GAFLPRIGEQ FNTQPPAVTN TVGSSYTKVP PIRSCVYTGF WSLMNMML // ID A0A0D2UNW4_GOSRA Unreviewed; 643 AA. AC A0A0D2UNW4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB57640.1}; GN ORFNames=B456_009G173100 {ECO:0000313|EMBL:KJB57640.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57640.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB57640.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB57640.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 340 441 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 567 617 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 340 441 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 643 AA; 71175 MW; 3E2FB4E4F9720270 CRC64; MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVTQPE LPSRVPYEVD LSTGIDRLNV CDRLSTPSLE KKKVEDFSER LMNGTLKPGT RDIHEKGNAG INCEEQRSPC LTKFQSSLKE EPNPQFGLAV PYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGLSM HGDAEMADPT SWSKVDKSGY IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPPNHVASVV VIEGFEFEEY GDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN SWDPERSSCS AIQELTAEQL ENLLPQCNPG ICCLKKTKYV GFV // ID A0A0D2UP21_GOSRA Unreviewed; 907 AA. AC A0A0D2UP21; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G048200 {ECO:0000313|EMBL:KJB69886.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69886.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69886.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69886.1; -; Genomic_DNA. DR RefSeq; XP_012454611.1; XM_012599157.1. DR GeneID; 105776487; -. DR KEGG; gra:105776487; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 774 858 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 907 AA; 100391 MW; 977CAAB890B64796 CRC64; MRLSSAGFNP PNQEDTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG TPGKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL IARDLHDNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV ITLSKYVKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG VSPWMQSRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GTASLQFQQP QNGPCRPAAL VQPQMLQQTL PQAILQGVED NQHQSQPHLL QQQLQHQNSF NNQQQHQQQP LFNNQQQQQP QHSMSQQHQQ LVDHQQIPSP VSAMSQYASA SQSQSSPLQS IPSLGQQQSF SDSNGNPVTS PVVSPLHSLL GSFPQDESSN LLNLPRTNPI MTTSAWPSKR VAVDVLSSGS PQCVLPQVEQ LGPSQTNMSQ NSISLPPFPG RECSIDQGGT DSQSHLLFGV NIEPSSVLMQ NGMSGLRGVG TDSDSTSIPF FSNYMSTAGN DFSVNPAMTP SSCIDESGFL QSQENVGQSN PQTRTFVKVY KSGSFGRSLD ISAFSNYNEL RSELAHMFGL EGQLEDPLRS GWQLVFVDRE NDVLLLGDDP WPEFVNSVWC IKILSPQEVQ QMGKRGLELL NSVPVQRLSN GSCDDYVSRQ DSRNLSSGIA SVGSLDY // ID A0A0D2UQ69_GOSRA Unreviewed; 673 AA. AC A0A0D2UQ69; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G091100 {ECO:0000313|EMBL:KJB70784.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB70784.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB70784.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB70781.1; -; Genomic_DNA. DR EMBL; CM001750; KJB70782.1; -; Genomic_DNA. DR EMBL; CM001750; KJB70783.1; -; Genomic_DNA. DR EMBL; CM001750; KJB70784.1; -; Genomic_DNA. DR EMBL; CM001750; KJB70785.1; -; Genomic_DNA. DR RefSeq; XP_012455499.1; XM_012600045.1. DR RefSeq; XP_012455500.1; XM_012600046.1. DR RefSeq; XP_012455501.1; XM_012600047.1. DR RefSeq; XP_012455502.1; XM_012600048.1. DR RefSeq; XP_012455503.1; XM_012600049.1. DR RefSeq; XP_012455504.1; XM_012600050.1. DR GeneID; 105777013; -. DR KEGG; gra:105777013; -. DR KO; K14486; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 639 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 75031 MW; 4733A22B1944B054 CRC64; MAFPASDIPS AEQQADDPLY RELWHACAGP LVTLPRVGER VYYFPQGHME QLEASMHQGL EHQMPSFDLP SKILCKVASV QRKAEPDTDE VYAQITLVPE VDQSEVMSPD DPLQEPERCI VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMTQQPP WQELIATDLH GNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGANGDLRV GVRRLMRQQA NMPSSVISSH SMHLGVLATA SHALSTRSMF SIFYKPRTSL SEFIVSVNKY LEARSHKLSV GMRFKMRFEG EEVPERRFSG TIVGVEDNKS SAWADSEWRS LKVQWDEPSS IIRPDRVSPW ELEPLVATSN SSISQPAQRN KRARPPVLPS PSSDLSSLGI WKSPVESPFS YCDAQRGQPS PKLSSTAKPN SVGFSGNSSL AAVSSSSKYW PNRVENVTES VAPVVNKESS ERKQGTGNGC RLFGIQLLDN INMEENSPLA TISGTGVNDQ PLHSLDANSD QQSDPSNLNQ SDLPSISCEP EKCLRSPQES QSKQIRSCTK VHMQGMAVGR AVDLTRFDCY EDLLKKLEYM FDIKGQLCGS TKNWQVVYTD DEDDMMMVGD DPWNEFCSMV RKIFIYTSEE VRKLSPKIKL PVNDDDDDSK ATKAGVDTVI NPEDRSSIVG QGC // ID A0A0D2UR56_GOSRA Unreviewed; 381 AA. AC A0A0D2UR56; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB58380.1}; GN ORFNames=B456_009G207400 {ECO:0000313|EMBL:KJB58380.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58380.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB58380.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB58380.1; -; Genomic_DNA. DR RefSeq; XP_012445060.1; XM_012589606.1. DR GeneID; 105769153; -. DR KEGG; gra:105769153; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 265 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 265 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43306 MW; AF05C79940FC1FD1 CRC64; MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEYDV CVFEPSNIGG KPIILDVIII RVLDSAVQAP VPLTITHPAS C // ID A0A0D2URE9_GOSRA Unreviewed; 158 AA. AC A0A0D2URE9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB71219.1}; GN ORFNames=B456_011G111100 {ECO:0000313|EMBL:KJB71219.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB71219.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB71219.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB71219.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 158 AA; 18076 MW; 997FDF2AB0314270 CRC64; MQILFTKVLT NTDVEKRLAV PNNSLKHFEL ENGNCSKSFE VKDENGSTWT FRCYVRNDGA YKKPVLSSGW RQFVLNKGVH QGDLITLYKD VEEEASYKIE VQRKIKLLGK ECWSSLEPDQ PAGATAQVQR KILLFGKECW YFLEPEQPTD ATGKVIQA // ID A0A0D2UT33_GOSRA Unreviewed; 578 AA. AC A0A0D2UT33; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_009G241900 {ECO:0000313|EMBL:KJB59155.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB59155.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB59155.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001748; KJB59155.1; -; Genomic_DNA. DR RefSeq; XP_012447242.1; XM_012591788.1. DR GeneID; 105770543; -. DR KEGG; gra:105770543; -. DR Proteomes; UP000032304; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 63514 MW; 3DA7A02BD86B5DB4 CRC64; MPPSRSSPPE LRHVDPRIWR ACAGSSVQIP TVNSRVYYFP QGHLEQVCGS TPKLSSLVLS RPLINCVISD VHYLADPRTD EVFAKLLLTP VETSRLPNQF LNVNGEVEDS DRNKIVSFAK VLTPSDANNG GGFSVPRFCA DSVFPPLDYN ADPPVQTLSV TDVRGGVWEF RHIYRGTPRR HLLTTGWSKF VNQKKLIAGD SVVFMRDCNW KMFIGVRRAM KAGEGGGDSG RWREPSDGGA MKGEGRGRMT AEAVAEAAEK AARGFPFEVV YYPRAGWTDF VARAVLVEAG ISTYWAAGTR VKMAVETEDS SRLAWFQGTV MSAAVPDSGP WIGSPWRMLQ VAWDEPEVLQ NARKVNPWQV QISSSSPLHS SFPSEKRLKF SQDSGLADAE GEIFPISGLT NSTMGYLNPS LLNYNSFPAG MQGARQYHFH LQSLTNDMSE NTPMMSTDNF SGNYVVPKPT RISTELNIGS SQSDNLSPDS QSSMVSFGTE LIEHGGCNSS KVGVGSFRLF GKIIALKEPV RSRFDDVGCM DDVGGKRHDE AVSEKNSLDL SLTYGCSKLL DRLDVQCQRA STFEGFSL // ID A0A0D2UTD2_GOSRA Unreviewed; 917 AA. AC A0A0D2UTD2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB71531.1}; GN ORFNames=B456_011G127500 {ECO:0000313|EMBL:KJB71531.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB71531.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB71531.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB71530.1; -; Genomic_DNA. DR EMBL; CM001750; KJB71531.1; -; Genomic_DNA. DR RefSeq; XP_012454315.1; XM_012598861.1. DR RefSeq; XP_012454316.1; XM_012598862.1. DR RefSeq; XP_012454317.1; XM_012598863.1. DR GeneID; 105776293; -. DR KEGG; gra:105776293; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 917 AA; 100524 MW; B81003FBA9611637 CRC64; MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC SSCGKRLHCG CIVSRSLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKIDAGQL HSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSLLQMK QEEVLPPAID IGSTCLSNTN QASNGSVQAV KPAIFKANIS ETLPQTNLSI SLGSSLGNQN VFPGSVVDEK GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CMQSMQLQAG DTVTFSRMDP EGKLVMGFRK ATNNAVVQEN LPSAIPNGTL SSESLFSGVF ENLPIISGYS GLLQSPKGST DPHLNALSKH LSSTGGDISW NKSGKHEDRI REGLLLPSML TPERKRTRNI GSKSKRLLID SQDALELKLT WEEAQDLLRP PPSIKPSVVT IEDHDFEEYD EPPVFGKRSI FAVRSTGGQE QWAQCDSCSK WRRLPVDVLL PPKWTCADNN WDQSRSSCSA PEELTPRELE NLLRLNRDFK KRRIAAFTRP TQEHESSSGL DALANAAILG DNADNSGTTS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCVVCMT VKRRFKTLTM RKKKRQSERE AEIAQRNQQA WGPSEEAEVD SSAKHVSSSH LNPFENEARS ANELESKSQS SNKLVEANKG QIDLNCDPDR EDDSQLGPNR TSMTSLVRVA SLPLETYLKE NGLTNLVYEQ QGNSASNAPP QSMSGTVEGE TQENSCFPSA TEEPESKDEE NGETGSDRVD DNNDKDP // ID A0A0D2UXF0_GOSRA Unreviewed; 685 AA. AC A0A0D2UXF0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G238900 {ECO:0000313|EMBL:KJB73564.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB73564.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB73564.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB73562.1; -; Genomic_DNA. DR EMBL; CM001750; KJB73564.1; -; Genomic_DNA. DR RefSeq; XP_012455248.1; XM_012599794.1. DR GeneID; 105776854; -. DR KEGG; gra:105776854; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 599 682 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 75691 MW; FBABE3CDB0C31EE5 CRC64; MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LVPLRENSFG VEDDGFDGNV GVENPEKSAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSASG TSGSQIGSYS PFLREGESKL MRKDCSGDPR GRVRADSVIE AASRAASGQP FEVVYYPRTS TPEFCVKASS VRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGTISTAKVV DPIRWPNSPW RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDFSFLNQIP MPSFSGNTFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR TAPPIRLSGD NFCSDHPNNT NISSLLTIGN PTQSLKQSND SKTPHIVLFG QLIFCEQRAS QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKEH QKTDLGLETG HCKVFMESEN VGRTLDLSVL GSYEELYGKL ANMFGIESSE MLSSVLYRDA AGSVKHTGDE PFSEFMKTAR RLTILMDSSS DNLER // ID A0A0D2UZ02_GOSRA Unreviewed; 149 AA. AC A0A0D2UZ02; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB74311.1}; GN ORFNames=B456_011G286700 {ECO:0000313|EMBL:KJB74311.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB74311.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB74311.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB74311.1; -; Genomic_DNA. DR RefSeq; XP_012453664.1; XM_012598210.1. DR GeneID; 105775740; -. DR KEGG; gra:105775740; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 149 AA; 16617 MW; E8AD4C8F0F939FA5 CRC64; MTILFSKVLT NTDVEKRLAV PNNSLKHFEL ENGNCSKSVE VKDEKGSTWT FRCYVRSDGA YKKPVLSSGW RQFVVNKGVH QGDLITFCKD VEAEATYKII VQRKIKLLGK EFWCSPEPEQ PTDATAQVIQ APADATGEVI QSLAVLPDV // ID A0A0D2UZK3_GOSRA Unreviewed; 124 AA. AC A0A0D2UZK3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB74571.1}; GN ORFNames=B456_012G151200 {ECO:0000313|EMBL:KJB74571.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB74571.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB74571.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB74571.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 124 AA; 14009 MW; AD2779FFAA276CBB CRC64; MAIFIKVLTK IDIERTLSLP DSCLQAAPQL QRSHGGEKLQ VKDDVGILWN FHCTIRSGVF PKLDIVSGWI QFVRFKQLNT GDAIVLYKDD DTLTGPHYKI EVLKGHGDDY SSFAQMYIKS CYAS // ID A0A0D2UZW7_GOSRA Unreviewed; 674 AA. AC A0A0D2UZW7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_012G004800 {ECO:0000313|EMBL:KJB74731.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB74731.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB74731.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB74730.1; -; Genomic_DNA. DR EMBL; CM001751; KJB74731.1; -; Genomic_DNA. DR RefSeq; XP_012460416.1; XM_012604962.1. DR GeneID; 105780565; -. DR KEGG; gra:105780565; -. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 74851 MW; E863EE613EEF5561 CRC64; MITVMDCRKE VVKTSEKCLD PQLWHACAGN MVQMPAVNSK VFYFPQGHAE HANRNVDFGS LLIPSLILCR ISAIKFMADP ETDEVYAKIM LVPLRENDFG YEDGFDGNIG MENLEKPPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI HAKDVHGNVW KFRHIYRGTP RRHLLTTGWS NFVNHKKLVA GDSIVFLRAE NGDLCVGIRR VKRGIGSGHE YPSSWNLGDG SSGYSPLLRE GESKSMRNDS NGDLRGRIRP ENVIEAVTRA ANGQPFEVVY YPRASTPEFC VKASSVRTAT QIHWYPGMRF KMAFETEDSS RISWFMGTIS IAQVVDPIRW PNSPWRLLQV AWDEPDLLHD VKRVSPWLVE LVTNIPAIHL NPFSPPRKRM RLPQHPDFSL LGQIPMPSFS DSTFRSSSPA CCITNNIPGG IQGARHAPFG LSSSDLRSSK LQSGLFPHGF NQLDHTIPPM GHSSDYGNNR NISSSPAMGN LTQSLKESNE IKTPHILLFG QLIFCEQQVS QSCSDTIGNS SSNGNTEKTM ISSDASGSAL HQNARENSSD EGSPWYKELP KTNMGLETGH CQVFTESENV GRTLDLSVLR SYEELHGNLA NMFGVKSSDM LSNVFYHDAA ASVKHTGDEP FSEFLKTARR LTVLTDSGSD NMGR // ID A0A0D2V086_GOSRA Unreviewed; 1096 AA. AC A0A0D2V086; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_012G009000 {ECO:0000313|EMBL:KJB74819.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB74819.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB74819.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB74819.1; -; Genomic_DNA. DR RefSeq; XP_012458726.1; XM_012603272.1. DR GeneID; 105779492; -. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 984 1068 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1096 AA; 121598 MW; EBE459C62EBAB4A1 CRC64; MGERELTDGC LSDDAGEAPE RRHINPELWQ ACAGPLVNLP AAGTHVVYFP QGHSEQVAAS MKRDVDAQIL NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLQPVSSFD KEALLRSDLS LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQKPAQE LEARDLHENV WKFRHIYRGK PQRHLLTTGW SLFVSGKRLF AGDSVLFIRD ETQQLLLGIR RANRQPANLS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASLSEF VIPLAKYYKA VYNHQISPGM RFRMMFETEE SGTRRYMGTI TGISDIDPVR WKNSQWHNLQ VGWDESTAGE RRNRVSIWEI EPVTAPFFIC PSPLFRSKRP RQPGMPADEY SDLDNLFKRP MPWLGDDICL KDSDAHPGLS LVQWMNMQQN PLLANSMQPN FMQSLAGSTM QNFDGADLSH QMGLSAPQMP QPNNLQFNAH RLPQKVQQLD QVPKLPSTMN SLGSIIQPQQ LNDMTQQSRQ NLVAQPLPSS QVLQPQALVQ SNNILQQQQT SNPTHQLPLS LPQNLQQHLV GPNHLQNLMH SQLPDPLNQH LQVPDNQVQF QLMQKLQQQQ QLLLAQQSAL QQPGQLAQPQ DQQRQLLDAS QSFSSSVTAS QVLEMPQNIP TLLPQSNVAP QQMPKNNSQA NVWFSQPPLQ SKVQQQQTGM LPEVPGLVGP FQTTATNQFS TAVSSVMMSA AVAAPSVITD DNPSCSTSPS TNCPSVLQPM IDSRVHRSTG LGDDISQSTA TVLNPNAVET MSTKANMVKE QQQKSVKPLL NISKSQNQGS FAPQNCINGA TAHADCLDTS SSTTSVCLSQ SDVHLHQNTP SYNPQTMLLR DTSQDGEVQA YPRNSVSYGN NMDSQIEMSM NSDTLSAKGM MGLGKDFSNH LSSGGVLASY ENPKDTQQEL SSSMVSQSYR VPDMAFNSID PTINHSSFIN RSGWTPPSQF QRLRTYTKVY KRGAVGRSID ITRYSGYDEL KQDLARRFGI EGQLEDRGRV GWKLVYVDHE NDVLLVGDDP WEEFINCVRC IKILSPQEVQ QMSVDGEFGN SVLPNQACSS SGNGNA // ID A0A0D2V687_GOSRA Unreviewed; 150 AA. AC A0A0D2V687; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77941.1}; GN ORFNames=B456_012G169100 {ECO:0000313|EMBL:KJB77941.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77941.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77941.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77941.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 150 AA; 17294 MW; 401006678173146E CRC64; MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRT KGFLRPVLTV GWKMFVVANE LKVGDRITMY KDEDGFSHYM VEVEKPPAGN QHGTLPNSPA PSFIHHEPDE TTVEYRREVP KNTTSLILHR // ID A0A0D2V6I7_GOSRA Unreviewed; 191 AA. AC A0A0D2V6I7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77524.1}; GN ORFNames=B456_012G167700 {ECO:0000313|EMBL:KJB77524.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77524.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77524.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77524.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 191 AA; 21599 MW; 000CD277788D20E4 CRC64; MAVQATMMFS KKLTYTDINK RLAIPTKIWP SLPGFNRSHA VKIQLMYGTK IWPIDCTVRK QGYTKPVFSR GWRKFVVHNK LKIGDRVTIY KVQHQDGSSH YRVEVEKPAA GNHEVDETTV TRHRREQLPN APMISMLASV PINTLVDDHV IITKPPVCRI FGTNISGEAC CKISTGQRLS LDLVLSQPTI C // ID A0A0D2V6Q2_GOSRA Unreviewed; 368 AA. AC A0A0D2V6Q2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77619.1}; GN ORFNames=B456_012G150900 {ECO:0000313|EMBL:KJB77619.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77619.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77619.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77619.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 42923 MW; 69EB69BF9378BFF0 CRC64; MVQFNGFHLV EKRFNGRIPD NFVKKFGDEL SVAAALTVPD GHVWRVGIRK ADKKVWFHEG WQEFVERYYI RAGYLLVFRY EGNSCFCVSI FSLYNSEINY QTNAFVGTQY YHRKPYPFEE LEDDECISPA LQNLFSRSKV NNCMNWSGEI NFRALKGMNS QSFRGAVLSK PNKPGRKKQK FDHAEPDSSV GREYDVYTNF RLYESASARK RTVTTEERER AINTAKSFEP MNPFCRVVLR PSYLYRGCIM YLPSCFAEKY LSGVSGFIKL QLPDGRQWPV RCRYRGGKAK FSQGWYEFTL ENNLGEGDVC IFELLRSREF VLKVTVFRVR ESAPVSMKCR PELNQLTYSE HTLPDDVKPI RVDKSMPF // ID A0A0D2V7D3_GOSRA Unreviewed; 242 AA. AC A0A0D2V7D3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77939.1}; GN ORFNames=B456_012G168900 {ECO:0000313|EMBL:KJB77939.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77939.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77939.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77939.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 242 AA; 27094 MW; 0104F723E066F53F CRC64; MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRK KGYLKPVLSV GWKKFVVANE LKVGDRITMY KDEDGFSHYM VEVEKPPASN QHDTLPDSPA LSFIHHKPDE TTLKYRKEVP EDLAGAHHQP DIAPMNIPVN AWQRPSIGMF GTNVSNERAD HFSLMTYGSG TSAAGGIGEA CPEIITDHHQ DLSLDLVRRQ PGTIPPPYVG EVKLDLTLAP PN // ID A0A0D2V800_GOSRA Unreviewed; 117 AA. AC A0A0D2V800; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB78771.1}; GN ORFNames=B456_013G018200 {ECO:0000313|EMBL:KJB78771.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB78771.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB78771.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB78771.1; -; Genomic_DNA. DR RefSeq; XP_012461799.1; XM_012606345.1. DR GeneID; 105781827; -. DR KEGG; gra:105781827; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13758 MW; 23AADB74744E23D1 CRC64; MKQLFSKVLS PTDIEHRLAV PSEILWAFEF DQARRCADFE VKDKHGQTWE FRCSTRKKDF HPKPVVSKGW RKFVKDKGLQ AGDKVVFYKD VEGDSSYKII TMKKVFKLFG EEVWLPS // ID A0A0D2V8U2_GOSRA Unreviewed; 194 AA. AC A0A0D2V8U2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB79206.1}; GN ORFNames=B456_013G039800 {ECO:0000313|EMBL:KJB79206.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB79206.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB79206.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB79203.1; -; Genomic_DNA. DR EMBL; CM001752; KJB79206.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 22156 MW; 3925BB967DD97981 CRC64; MHLNLKNSAN EVKLRTSGSG AMKPEPKKRG RKRKFDPNVQ DSSAGREDDA DMRLRCYESA SARKRTVTAE ERERAINAAK AFEPINPFCR VVLRPSYLYR GCIMYLPSCF AEKHLSGVSD SIKLQLPDGR QWSVRCRYKG GKAKFSRGWY EFTLENNLGE GDVCVFELLR SREIVLKVTV FRVMESGGLM HRSQ // ID A0A0D2VAA8_GOSRA Unreviewed; 345 AA. AC A0A0D2VAA8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB79249.1}; GN ORFNames=B456_013G040000 {ECO:0000313|EMBL:KJB79249.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB79249.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB79249.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB79249.1; -; Genomic_DNA. DR RefSeq; XP_012462595.1; XM_012607141.1. DR GeneID; 105782416; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 39598 MW; 1F1F4A942612C19D CRC64; MPRPFFHKLI LSTTLQEKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKVW FQEGWQEFLE RYYIRVGYVL VFRYEGNSAF SVSIFNLYNS EINYQTNALV GTQYNHGKQY PFEQLEDDEC ISPALQNLFG GSKLNNCINW GGDANLQTSK GVNNQPIRGS GAMKPEPKKR GRKRKFDPNV QDSSAGREDD VDMRFRCYES ASARKRTVTA EERERAINAA KAFEPTNPFC RVVLRPSYLY RGCIMYLPSC FAEKHLSGVS GSIKLQLPDG RQWSVRCLYK GGKAKFSQGW YEFTLENNLG EGDVCVFELL RSREFVLKVT VFRVMESGGL MHRSQ // ID A0A0D2VHK1_GOSRA Unreviewed; 686 AA. AC A0A0D2VHK1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G030900 {ECO:0000313|EMBL:KJB69570.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69570.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69570.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69570.1; -; Genomic_DNA. DR EMBL; CM001750; KJB69572.1; -; Genomic_DNA. DR RefSeq; XP_012456156.1; XM_012600702.1. DR GeneID; 105777433; -. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 75131 MW; A6B264F1C4DDA1B0 CRC64; MGCLIDLNAT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEQTEQKL QEVDGEDEDA EADMKLATPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYDQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GEDGELRLGI RRAAQIKNGA SFLSLCSKQL NRSTFADAVH AISMKSVFSI YYNPSRASSS EFIVPVCKFR KSLDRSFSVG MRFKMRFETE NAPERRSSGL ITGTSDLDPV RWPGSKWKCL SVRWDDIDAN KHGRVSHWEI ELSGSISSSN CLLSPCSKRN RVGLPSGKPE FMVPDGIGAP DFGEPLRFQK VLQGQEILGF STLYNSADSH NMHWSEIRRC FPGSNGSGIA TIGNVGRDPP LNPVISYKGV GFGESFGFHK VLQGQEIFLS SLYRRGSTME ETRGNDSAGL PNVGQMSGTR SGWSSSMQGY NTHSPVQPSA QVSSPSSVLM FQQASNPVPN FNPTRNFNQE MERGVSSFRV PETYGAKLLS SSISEHDSQP LAAQPSFGTN QELASCKSSC RLFGFSLTEG DLDATKEDNM VHATLSLGRG SLLPCIGENF HPNPPAVAST VWKQLY // ID A0A0D2VI67_GOSRA Unreviewed; 902 AA. AC A0A0D2VI67; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_011G048200 {ECO:0000313|EMBL:KJB69885.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69885.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB69885.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001750; KJB69885.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 774 854 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 902 AA; 99814 MW; 1930089756301207 CRC64; MRLSSAGFNP PNQEDTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG TPGKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL IARDLHDNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV ITLSKYVKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG VSPWMQSRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GTASLQFQQP QNGPCRPAAL VQPQMLQQTL PQAILQGVED NQHQSQPHLL QQQLQHQNSF NNQQQHQQQP LFNNQQQQQP QHSMSQQHQQ LVDHQQIPSP VSAMSQYASA SQSQSSPLQS IPSLGQQQSF SDSNGNPVTS PVVSPLHSLL GSFPQDESSN LLNLPRTNPI MTTSAWPSKR VAVDVLSSGS PQCVLPQVEQ LGPSQTNMSQ NSISLPPFPG RECSIDQGGT DSQSHLLFGV NIEPSSVLMQ NGMSGLRGVG TDSDSTSIPF FSNYMSTAGN DFSVNPAMTP SSCIDESGFL QSQENVGQSN PQTRTFVKVY KSGSFGRSLD ISAFSNYNEL RSELAHMFGL EGQLEDPLRS GWQLVFVDRE NDVLLLGDDP WPVWCIKILS PQEVQQMGKR GLELLNSVPV QRLSNGSCDD YVSRQDSRNL SSGIASVGSL DY // ID A0A0D2VJC1_GOSRA Unreviewed; 412 AA. AC A0A0D2VJC1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83971.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83971.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83971.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83971.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83971.1; -; Genomic_DNA. DR RefSeq; XP_012465039.1; XM_012609585.1. DR GeneID; 105783885; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 308 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 308 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 46924 MW; 30CD565BECAC35C3 CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LLQCSKQLKT CCVVIKLNDV SKKIPNKFVK KFGHELSSIA TLNVPSGRLW LVELRKENKR VWLDCGWTVF VEYYSICSGY FLVFRYDGNS HFNVHIYNLN ASEINYQSNG LNDSREPGHD KHLKDVEDGA FAQILRSQPT SSSSCFLIDD DFDECVDHDR KKRKNSTFLD QKNNVDDLRA TVQSTRDKGI QFNGVELTSA ADEGGLNFLN GTQKNTKEIK QEIEPDEYKS LGKFIVKEEL PAMNSPRSDH KKRRDATAEG KQIALRAAAM FKPDNPFCRV ILRPSYVYKG IFLHIPRCFA LRYLNGVDGI VTLQVSEGKK WPVRCIYGQS SWKFSKGWAE FVLDNNLDEG DVCVFELIST KEIVLKVTIF RVLEDGVAVN QL // ID A0A0D2VJC4_GOSRA Unreviewed; 348 AA. AC A0A0D2VJC4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83976.1}; GN ORFNames=B456_013G204000 {ECO:0000313|EMBL:KJB83976.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83976.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83976.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83976.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39851 MW; 550FB4542DE9A675 CRC64; MEEEILSVIS SGEANTNSDV SDSISTTHQA NKSQRCGSKG NSSQFKGVMR QKNGQWGAQL YTNHTRIWLG TFKTEIDAAV AYDSAVIKFR PGDTHRNFPR NEITIEEPKL LSHYSAEAAL SMIRDGSSQY KFMDFIKARS RSIKPSIALN SVETYSNEGL ICKQLFQKEL TPSDVGKLNR LVIPKKYAVK YFPPVSWTEK ENADIGDRKT NHVELVFYDK FMRIWKFRYC YWNSSQSFVF TRGWNRFLKE KELKANDVVS FFVCECRKEN EVRRFCMIDA NKSGNGGTFV AVNTVHVGIE VDLQLRLGHY YPIGDEKHVQ EEQGSMATAK QKQDDKTEGF KLFGMQIN // ID A0A0D2VJR0_GOSRA Unreviewed; 526 AA. AC A0A0D2VJR0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83399.1}; DE Flags: Fragment; GN ORFNames=B456_013G245600 {ECO:0000313|EMBL:KJB83399.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83399.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83399.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83399.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 421 519 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 421 519 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KJB83399.1}. SQ SEQUENCE 526 AA; 59735 MW; C49EBEFC9C9F3058 CRC64; GIPRKFVRKY GNQLSSPVKL ELPSGAIWQV ELAKTDERVR LQNGWREFAE HYSLELGSFV VFRYEGNDHF HVLIFDKSAL EIEYPHTSTE GNDVSRKSKE KSHLPCPLPR KKMRIDSSNQ HDQNSKLEVL SSGTSPDAQR NVKTKAFSCV QRLAANEKAH AVQIASAFES TENPVFMTVM QPSYVRGTCR MFIPSDFARK FLTVHKSNLT LCNSTGKTWH AKLYYLANKK PNAHLYGGWR EFVEDNHLNV GDICVFELIK YPEILMKAQI YPGVKNASKA RWQQSLGSIV SQVKNRILVS DAEPNCQQSP SSSRESKDLT DSHIKTLDDS PLDQKTKKKL TRLSVQPCKM TRTSLSGSIQ AKGIKHEKGK SLNFQYSTQE LGGDLFWKEV RCSEMSEPDP VYQKQRACTG GGAFRTSNPS FSVVIHPSHV RSCSTVHIPE EFGKRYLKKS GEMMLRVADG RSWNVEYERR GRSTSRKAVF EGKSWGQFAM DNEFEVGDVC VFELMNENGN LLEVVIHRKL LLIEIN // ID A0A0D2VL09_GOSRA Unreviewed; 414 AA. AC A0A0D2VL09; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83969.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83969.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83969.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83969.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83969.1; -; Genomic_DNA. DR RefSeq; XP_012465038.1; XM_012609584.1. DR GeneID; 105783885; -. DR KEGG; gra:105783885; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 310 405 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 310 405 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 414 AA; 47152 MW; 02A8F655E9D8E37D CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LLQCSKQLKT CCVVIKLNDV SKKIPNKFVK KFGHELSSIA TLNVPSGRLW LVELRKENKR VWLDCGWTVF VEYYSICSGY FLVFRYDGNS HFNVHIYNLN ASEINYQSNG LNDSREPGHD KHLKDVEDGA FAQILRSQPT SSSSCFLIDD DFDECVDHDR KKRKNSTFLD QKNNVDDLRA TVQSTRDKGI QFNGVELTSA ADEGGLNFLN GTQKNTKEIK QEIEPDIDEY KSLGKFIVKE ELPAMNSPRS DHKKRRDATA EGKQIALRAA AMFKPDNPFC RVILRPSYVY KGIFLHIPRC FALRYLNGVD GIVTLQVSEG KKWPVRCIYG QSSWKFSKGW AEFVLDNNLD EGDVCVFELI STKEIVLKVT IFRVLEDGVA VNQL // ID A0A0D2VL15_GOSRA Unreviewed; 307 AA. AC A0A0D2VL15; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83974.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83974.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83974.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83974.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83974.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 307 AA; 35018 MW; D3532BC51E776B5C CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL NDSREPGHDK HLKDVEDGAF AQILRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDIDEYK SLGKFIVKEE LPAMNSPRSD HKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK GIFLVSP // ID A0A0D2VTK8_GOSRA Unreviewed; 119 AA. AC A0A0D2VTK8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB74570.1}; GN ORFNames=B456_012G151100 {ECO:0000313|EMBL:KJB74570.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB74570.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB74570.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB74570.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 119 AA; 13408 MW; 987E070F1A5B7624 CRC64; MASFFKVLTK IDIERTLSLP DSCLQALQQS QRSHGGKKLK VKDDVGILWN FHCTIRSGVA PKLDIVSGWI QFVRFKQLNT GDVIVLNKDD DTLTGPHYKI EVFKGDADGY SSFVHKNEI // ID A0A0D2VU04_GOSRA Unreviewed; 1102 AA. AC A0A0D2VU04; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=B456_012G009000 {ECO:0000313|EMBL:KJB74820.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB74820.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB74820.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB74820.1; -; Genomic_DNA. DR EMBL; CM001751; KJB74821.1; -; Genomic_DNA. DR RefSeq; XP_012458721.1; XM_012603267.1. DR RefSeq; XP_012458722.1; XM_012603268.1. DR RefSeq; XP_012458723.1; XM_012603269.1. DR RefSeq; XP_012458724.1; XM_012603270.1. DR GeneID; 105779492; -. DR KEGG; gra:105779492; -. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 990 1074 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1102 AA; 121945 MW; 29A7E6D62A3A4242 CRC64; MNVVAAGVES TSNPAAPGSA EGEAPERRHI NPELWQACAG PLVNLPAAGT HVVYFPQGHS EQVAASMKRD VDAQILNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSSFDKEAL LRSDLSLKSN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QKPAQELEAR DLHENVWKFR HIYRGKPQRH LLTTGWSLFV SGKRLFAGDS VLFIRDETQQ LLLGIRRANR QPANLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASLSEFVIPL AKYYKAVYNH QISPGMRFRM MFETEESGTR RYMGTITGIS DIDPVRWKNS QWHNLQVGWD ESTAGERRNR VSIWEIEPVT APFFICPSPL FRSKRPRQPG MPADEYSDLD NLFKRPMPWL GDDICLKDSD AHPGLSLVQW MNMQQNPLLA NSMQPNFMQS LAGSTMQNFD GADLSHQMGL SAPQMPQPNN LQFNAHRLPQ KVQQLDQVPK LPSTMNSLGS IIQPQQLNDM TQQSRQNLVA QPLPSSQVLQ PQALVQSNNI LQQQQTSNPT HQLPLSLPQN LQQHLVGPNH LQNLMHSQLP DPLNQHLQVP DNQVQFQLMQ KLQQQQQLLL AQQSALQQPG QLAQPQDQQR QLLDASQSFS SSVTASQVLE MPQNIPTLLP QSNVAPQQMP KNNSQANVWF SQPPLQSKVQ QQQTGMLPEV PGLVGPFQTT ATNQFSTAVS SVMMSAAVAA PSVITDDNPS CSTSPSTNCP SVLQPMIDSR VHRSTGLGDD ISQSTATVLN PNAVETMSTK ANMVKEQQQK SVKPLLNISK SQNQGSFAPQ NCINGATAHA DCLDTSSSTT SVCLSQSDVH LHQNTPSYNP QTMLLRDTSQ DGEVQAYPRN SVSYGNNMDS QIEMSMNSDT LSAKGMMGLG KDFSNHLSSG GVLASYENPK DTQQELSSSM VSQSYRVPDM AFNSIDPTIN HSSFINRSGW TPPSQFQRLR TYTKVYKRGA VGRSIDITRY SGYDELKQDL ARRFGIEGQL EDRGRVGWKL VYVDHENDVL LVGDDPWEEF INCVRCIKIL SPQEVQQMSV DGEFGNSVLP NQACSSSGNG NA // ID A0A0D2VZ85_GOSRA Unreviewed; 145 AA. AC A0A0D2VZ85; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77460.1}; GN ORFNames=B456_012G167500 {ECO:0000313|EMBL:KJB77460.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77460.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77460.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77460.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 145 AA; 16885 MW; CA8FD95AA4F892FD CRC64; MAIEKELFKK RLTKTDVEKR LSIPSRKKKC FLNFRGKHMA EFKVKDKHGK EWKFNCSTRK KDYPKPVLTS GWLLFVQWWN LAVGDEVKVY GKMDQAGEEH YRIEVAVATD STADGTVNDD QTETHFFEFI SLKPDLNVGK SKLIN // ID A0A0D2VZJ0_GOSRA Unreviewed; 385 AA. AC A0A0D2VZJ0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77620.1}; GN ORFNames=B456_012G150900 {ECO:0000313|EMBL:KJB77620.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77620.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77620.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77620.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 252 347 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 347 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 385 AA; 45002 MW; 24981B189BDD46A6 CRC64; MFMCYDVYMH LNHSSPDFII CQITKPNLIW VLQRIPDNFV KKFGDELSVA AALTVPDGHV WRVGIRKADK KVWFHEGWQE FVERYYIRAG YLLVFRYEGN SCFCVSIFSL YNSEINYQTN AFVGTQYYHR KPYPFEELED DECISPALQN LFSRSKVNNC MNWSGEINFR ALKGMNSQSF RGAVLSKPNK PGRKKQKFDH AEPDSSVGRE YDVYTNFRLY ESASARKRTV TTEERERAIN TAKSFEPMNP FCRVVLRPSY LYRGCIMYLP SCFAEKYLSG VSGFIKLQLP DGRQWPVRCR YRGGKAKFSQ GWYEFTLENN LGEGDVCIFE LLRSREFVLK VTVFRVRESA PVSMKCRPEL NQLTYSEHTL PDDVKPIRVD KSMPF // ID A0A0D2W053_GOSRA Unreviewed; 269 AA. AC A0A0D2W053; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB77940.1}; GN ORFNames=B456_012G169000 {ECO:0000313|EMBL:KJB77940.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB77940.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB77940.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001751; KJB77940.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 269 AA; 29062 MW; 557AF078BA23DD75 CRC64; MFSKKFKTTD INKRLAIPGK ILPSLPAFNG GHAVMIQLKY GINIWPIYCT VRENGYKKPV LSVGWRKFVA DNKLKTGDII TMYKDFEDED GGSHFRVEVE KPPAASKQDR SHGTLPSSSV IAFNDHEVHG TNSGNEADRI PNKALDDGAI NLEGGIPIME LPDVATDTLV DGHVIAKPSV TIFGAIMTDE MKCLGITKGT DMAEPSLFSP CMAKPEREID FLGIVEGGDA IAYGSGPSDA AGEACCNFIT HHRSITLDLV LSQPNPYAG // ID A0A0D2W2K4_GOSRA Unreviewed; 236 AA. AC A0A0D2W2K4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB79205.1}; GN ORFNames=B456_013G039800 {ECO:0000313|EMBL:KJB79205.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB79205.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB79205.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB79202.1; -; Genomic_DNA. DR EMBL; CM001752; KJB79204.1; -; Genomic_DNA. DR EMBL; CM001752; KJB79205.1; -; Genomic_DNA. DR RefSeq; XP_012462596.1; XM_012607142.1. DR RefSeq; XP_012462597.1; XM_012607143.1. DR GeneID; 105782417; -. DR KEGG; gra:105782417; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 26906 MW; 37E677D7D2203CFD CRC64; MKEIPRSVKQ YPFEQLQDNE CISPALQNMF GGSKLSNCIN WGGDVNRQNP KAVNNQPIRG SGAMKPEPKK RGRKRKFDPN VQDSSAGRED DADMRLRCYE SASARKRTVT AEERERAINA AKAFEPINPF CRVVLRPSYL YRGCIMYLPS CFAEKHLSGV SDSIKLQLPD GRQWSVRCRY KGGKAKFSRG WYEFTLENNL GEGDVCVFEL LRSREIVLKV TVFRVMESGG LMHRSQ // ID A0A0D2W3Z8_GOSRA Unreviewed; 345 AA. AC A0A0D2W3Z8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB80070.1}; GN ORFNames=B456_013G080000 {ECO:0000313|EMBL:KJB80070.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB80070.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB80070.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB80070.1; -; Genomic_DNA. DR RefSeq; XP_012465027.1; XM_012609573.1. DR GeneID; 105783878; -. DR KEGG; gra:105783878; -. DR KO; K09287; -. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 104 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 179 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 104 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 179 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 38495 MW; 9D2D579E544DB085 CRC64; MDGSSCIDDS TTSDSMNVSP LSPLCRVGSG NSGVILDTEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA ARRFRGRDAV TNFKQAEKTE GDDMEMAFLE SRSKAEIVDM LRKHTYNDEL EQSRRSYGLD GNGKRVVKYN AGFGPFSFGL GLKPREQLFE KAVTPSDVGK LNRLVIPKQH AEKHFPLQTG TAFSKEVLLN FEDVRGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLNAG DIVSFQRSTG PEKQLYIDCK ARTGSVSGSA NPAVPVPFVR LFGVNIFNIS GGGGDSVGGC NGKRTREMEL LELEFSKKQR VIDAL // ID A0A0D2WA21_GOSRA Unreviewed; 390 AA. AC A0A0D2WA21; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KJB83970.1}; GN ORFNames=B456_013G039700 {ECO:0000313|EMBL:KJB83970.1}; OS Gossypium raimondii (New World cotton). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; OC Gossypium. OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB83970.1, ECO:0000313|Proteomes:UP000032304}; RN [1] {ECO:0000313|EMBL:KJB83970.1, ECO:0000313|Proteomes:UP000032304} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23257886; DOI=10.1038/nature11798; RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D., RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R., RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., RA Grover C., Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., RA Marler B.S., Page J.T., Roberts A.W., Romanel E., Sanders W.S., RA Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., RA Zhang L., Ashrafi H., Bedon F., Bowers J.E., Brubaker C.L., Chee P.W., RA Das S., Gingle A.R., Haigler C.H., Harker D., Hoffmann L.V., Hovav R., RA Jones D.C., Lemke C., Mansoor S., ur Rahman M., Rainville L.N., RA Rambani A., Reddy U.K., Rong J.K., Saranga Y., Scheffler B.E., RA Scheffler J.A., Stelly D.M., Triplett B.A., Van Deynze A., RA Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J., Zaki E.A., RA Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S., RA Wang X., Schmutz J.; RT "Repeated polyploidization of Gossypium genomes and the evolution of RT spinnable cotton fibres."; RL Nature 492:423-427(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001752; KJB83970.1; -; Genomic_DNA. DR Proteomes; UP000032304; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032304}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032304}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 381 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 381 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 390 AA; 44463 MW; 3BFF4D637FC3D3AE CRC64; MSQPTGPSLP HKKSCIFYKL MVASILHDKK LIPNKFVKKF GHELSSIATL NVPSGRLWLV ELRKENKRVW LDCGWTVFVE YYSICSGYFL VFRYDGNSHF NVHIYNLNAS EINYQSNGLN DSREPGHDKH LKDVEDGAFA QILRSQPTSS SSCFLIDDDF DECVDHDRKK RKNSTFLDQK NNVDDLRATV QSTRDKGIQF NGVELTSAAD EGGLNFLNGT QKNTKEIKQE IEPDEYKSLG KFIVKEELPA MNSPRSDHKK RRDATAEGKQ IALRAAAMFK PDNPFCRVIL RPSYVYKGIF LHIPRCFALR YLNGVDGIVT LQVSEGKKWP VRCIYGQSSW KFSKGWAEFV LDNNLDEGDV CVFELISTKE IVLKVTIFRV LEDGVAVNQL // ID A0A0D2ZPG5_BRAOL Unreviewed; 308 AA. AC A0A0D2ZPG5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo00285s530.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo00285s530.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo00285s530.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo00285s530.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo00285s530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013613409.1; XM_013757955.1. DR EnsemblPlants; Bo00285s530.1; Bo00285s530.1; Bo00285s530. DR GeneID; 106319583; -. DR Gramene; Bo00285s530.1; Bo00285s530.1; Bo00285s530. DR OMA; IPIRMED; -. DR Proteomes; UP000032141; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34958 MW; 86F415EE5E3F0D76 CRC64; MMMDEVHDVE TKASALMASV HHRPGFGSGS GHVHGLSASV PLLGVNWKRR RMPRQRRSSS SFNLLSFPTL PPSSSHVPTP LPARKIDTRR LRFLFQKELK NSDVSSLRRM ILPKKAAEAH LPALESKEGI PIKMEDLDGL HVWTFKYRYW PNNNSRMYVL ENTGDFVNAH GLQQGDFIMV YQNLYPNNYV IQARKASEEE NLTKIEEDDV YTDLTKIENT VVNDLLIQDY NHHYNSDNGK CSYYYPIIDD VTATATTASF VYDTTALTSN DTPLDFLGGL TMRTNNYYSK VGSFEGFGSV ENISLDDF // ID A0A0D2ZRM9_BRAOL Unreviewed; 339 AA. AC A0A0D2ZRM9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo00853s090.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo00853s090.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo00853s090.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo00853s090.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo00853s090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013614056.1; XM_013758602.1. DR RefSeq; XP_013614057.1; XM_013758603.1. DR EnsemblPlants; Bo00853s090.1; Bo00853s090.1; Bo00853s090. DR GeneID; 106320236; -. DR Gramene; Bo00853s090.1; Bo00853s090.1; Bo00853s090. DR OMA; WNLGRSE; -. DR Proteomes; UP000032141; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38372 MW; 0FFED67DC0A92E15 CRC64; MSTRASTHQE PAENGASGSD NNNNNNFNSA MREPMFEKVL TPSDVGKLNR LVIPKQHAEN YFPLEDNQTG TLLDFQDKNG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LNNGDTVSFH RGYVPNDNEP EQRRNILFID WRNRSDTNLL HNINHHHHPI LGPPPYPTAS YYPVTEYSMP HYGRFPSLYH NQFLGYGYGP YGKTVTGGRY YAGSPLDHHH RWNLGRSEPF VYDSCPVFPT TSLTSSLAML PSSSPSQPPQ EGTAKKLRLF GFDVEESSSS GEARAEIGVA GHSSSSPVVI RDNESSWRSP RGEMGGLSSS VVNLSDDEDY KRKGKSLEF // ID A0A0D2ZRZ9_BRAOL Unreviewed; 2037 AA. AC A0A0D2ZRZ9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo00889s060.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo00889s060.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo00889s060.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo00889s060.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo00889s060.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo00889s060.1; Bo00889s060.1; Bo00889s060. DR Gramene; Bo00889s060.1; Bo00889s060.1; Bo00889s060. DR Proteomes; UP000032141; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.10140; -; 1. DR Gene3D; 3.80.10.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR011713; Leu-rich_rpt_3. DR InterPro; IPR006553; Leu-rich_rpt_Cys-con_subtyp. DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000157; TIR_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR000571; Znf_CCCH. DR Pfam; PF02362; B3; 1. DR Pfam; PF07725; LRR_3; 1. DR Pfam; PF13855; LRR_8; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF01582; TIR; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00367; LRR_CC; 4. DR SMART; SM00369; LRR_TYP; 2. DR SMART; SM00255; TIR; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52058; SSF52058; 3. DR SUPFAM; SSF52200; SSF52200; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51450; LRR; 9. DR PROSITE; PS50104; TIR; 1. DR PROSITE; PS50103; ZF_C3H1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Leucine-rich repeat {ECO:0000256|SAAS:SAAS00492074}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Repeat {ECO:0000256|SAAS:SAAS00492321}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}. FT DOMAIN 161 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 401 487 TIR. {ECO:0000259|PROSITE:PS50104}. FT DOMAIN 1101 1129 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DNA_BIND 161 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 1101 1129 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. SQ SEQUENCE 2037 AA; 229918 MW; EB77F7AE60278D17 CRC64; MDEDDKEYWE ELLEFNRQPP PSGSTADDAG EGINAASFKG MDEDDKEYWE ELLEFNRQRP PSGSTADDAG EGINAASFKE MDEDDKENPF SSPLVLNEHL KKTQIGDEKK LNIPAGQQQH NLCEKCLTTS DDLHRLVVTA NKDACKYFPL ATVFRSTDNF LQLEDEEGKP WMFEFSYLKV SQIYEFTEAW SSYVKEKQLG IGDFVFIQRH RTDSSRLSIG FRRRNNSLLY ENPAPLTMSI GDGGSALQSD NFPCHDPAPS TISFMDGDAP LQLTPPFQSD NFPCHDPAPA ALQLDPCQDT FPCHDLAPPT ISFGDGGAAP RDCIYLLPDS VTSSETLEQP RVSGYSITGV DHILVISCGY NQSSEERYFI SYIFNELRLR GFAPLGYDLS RSPVNGNQDL LDKSQLGIII FSMNYVSSRE CMDGFVALMD HSKANELMLF PVFFEVEFCN VKDQAGSFEK AFAQFENSVQ ASQVLKWKAA VKELTSTDRY HQYKKGDEVM LAKNIVRDVQ VNSKTGSNLT ESLQLSYILS LLNSSQSSAP HIVGLWGMAG IGKTTFSREI FRTQGERYDV CYFLPDFHQL CQTKGLNPLR EEFLSKIFGE EKVFIDPCGT KLSFTRDRFR DKKVLIVLDG VSNARDAEVL VGGFGWFSGG HTIILTSRNR QVLVKCNAKE IYEIKKLSES DSIRLCRQFA TEKNWKVRMS LIEELVNYAS GNPLALRALC SSIQKQCISD EEEHLSILHH HPPIEIRDAF GGIFRELDDN EKNTFLDLAC FFKGENKDHV VNILDGCGFL TDLGISGLID ESLISLVDNR IEMPNIFQDM GRFVVRQEHE EAGKRSRLSD SSDIVDVLTN NSGTEIIEGI FLNASGLKLK LSSNVFEEMD RLRLLKLHYP TSENDCKVSL PEGLLSLPDE LRLLHWERYP LESLPGNFNP ENLVELNMPY SNLTKLWEGT ESLEMLKRII LSHSRQLTDF SWLSMATNLE HIDLEGCTSL VEVNSSSILH HRKLSFLSLK DCSHLRIIPS TAHLESLEVL NLSGCSELEH LEDFSPNLTK IYLAGTAIKE IPSSIVALTR LVTLDVGNCN RLQHLPPEIN LKAVVGFTPS QPGQPVCTSY FHTGICSKGP ACSSDHPTLS THKNTSSIAS ETQVHVELIR ALTHENPSSN NLEEVSTKKP RIHRTTSFVT SGTLDLNQQE IGFSFFNQPE SSSPLGASLS EFSRGGRSNK KRERLRVVPD KEIQKVLKVS YDTLDDEQKS MFLDIACFFR SEKADFISSI LKSDRVDAAA VMRDLEDKCF LTVSYNRLEM HDLLHTMGKE IGYESSVKRE GKRTRLWNPK DIRHVLEQST GTGCVRGIFL NMSNVERIKL SPDVFMKMSN LKFLKFHYSH CSQWCDNKHK IQFSEDLDHF PDELVYLHWQ GYPYEYLPSE FNPEELVDLS LRHSYIKQLW EDEKVPQNTE KLRWVDLSQS QGLLNLSGLS RAKNLERLDL EGCKSLVMLG SSIEQMNKLI YLNLRECTSL ESLPEGINLK SLKTLILSGC SNLQEFQIIS ENIESLYLDG STIQRVAERI ESLRNLILLN LKNCCRLKCL PNDLYKLKSL QELILSGCSA LESLPPIKEE MGCLEILLMD GTSIKQTPET IFLSNLKVFS FCGSSIEDST ELALLPFSGN SCLSDLYLTN CNIYKLPDNF SSLHSLRSLC LSRNNIETLP ESIEKLHCLL FLDLKHCRRL NSLPVLPPNI QYVDAHGCVS LEKVAKPVTV PLVTERMHTT FIFTDCFKLN RAEQEAIVAQ AQLKSQLLAR TSLQHNHKGL VLDPLVAVCF PGSDIPSWFC HQSTGSSIET DLLPHWCNNK FIGASLGVVV TFKDHEGRHA NRLSVRCKCR FKNRNGQSIS FSFCLGGWNE SCGSSCHEPR KLGSEHVFIS YNNCNVPVFQ WNEESNDGNR CRPTSASFEF YLTDGTKRKL ERCKVTRCGM SLLYAPDDND RGFQGTRVTD TVERTSSEAY VPVRASTRDD HRDQLSVDIG ELESIDAQDI VSIESEARRN PIWSQPT // ID A0A0D2ZTH0_BRAOL Unreviewed; 245 AA. AC A0A0D2ZTH0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo01079s020.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo01079s020.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo01079s020.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo01079s020.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo01079s020.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013614625.1; XM_013759171.1. DR EnsemblPlants; Bo01079s020.1; Bo01079s020.1; Bo01079s020. DR GeneID; 106320819; -. DR Gramene; Bo01079s020.1; Bo01079s020.1; Bo01079s020. DR OMA; LECEADD; -. DR Proteomes; UP000032141; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 28478 MW; B67343938E481B5C CRC64; MSINQYSSEF HYHSLMWQQQ QQHHQQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE RYFPLAAAAV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG DVVLFHRHRV DGGRFFIGWR RRGDSSSSSD SYRHLQSNAS LQYYPHAGAQ AVENQRGNSK TLRLFGVNME CQIDSDWSEP STPDGFTTYS TNHDQFPIYP EHYPPPCYMD VSFTGDVHQT RSQQG // ID A0A0D2ZTU4_BRAOL Unreviewed; 555 AA. AC A0A0D2ZTU4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo01141s010.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo01141s010.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo01141s010.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo01141s010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013614735.1; XM_013759281.1. DR EnsemblPlants; Bo01141s010.1; Bo01141s010.1; Bo01141s010. DR GeneID; 106320938; -. DR Gramene; Bo01141s010.1; Bo01141s010.1; Bo01141s010. DR OMA; NDELYTE; -. DR Proteomes; UP000032141; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 451 543 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 62529 MW; 26CACB7BBEFDA6B9 CRC64; MANVDADDLR TSFSRSYNDE LYTELWKACA GPLVEVPLTE ERVFYFPQGH MEQLVASTNQ GIKSEDIPDF KLPPKILCRV LSVMLKAEHD TDEVYAQITL KPEEDQSELT SLDPPLVEPT KQVFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMGQ ATPTQELVTR DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV SSKRLVAGDA FVFLRGENGD LRVGVRRLAR HQSTMPTSVI SSQSMHLGVL ATASHAVVTK TIFLVFYKPR ISQFIVGVNK YMEAMKHGFS LGTRFRMRFE GEESPERMFT GTIVGIGDLS SQWPASTWRS LQVQWDEPTT VQRPDRVSPW EIEPFLSSPP VSTPAQQSQP KCKRSRPVES SVLTPAPPTF LYGFPQNQET PPPPPPSASS CYRLFGFDLT SNPPAPIPPD KCQEPITPSA ANEPKKQQKQ RTRTKVIMQG VAVGRAVDLT LLKSYGELIK ELEEMFEIKG QLLTREKWVV VFTDDEGDMM LAGDDPWNEF SKMTKKIFIY SSDEVKKMTT MLKSSSSLEN DESMD // ID A0A0D2ZX39_BRAOL Unreviewed; 157 AA. AC A0A0D2ZX39; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo04481s010.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo04481s010.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo04481s010.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo04481s010.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo04481s010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo04481s010.1; Bo04481s010.1; Bo04481s010. DR Gramene; Bo04481s010.1; Bo04481s010.1; Bo04481s010. DR Proteomes; UP000032141; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 157 AA; 17855 MW; E98CC32F94E7522F CRC64; MAFHVTLLGP SGCEFQYESC SEEENNLGRN IPKKKNLERE AESSSLDPSC FLATIWPSSL RYDTLNLPRS FVRSNGLETR CGGEIVLMNE KGKSWTLALK QKLSGSTYIR RGWRRFCSAN VLKTGGVYTF KLIHSGRTPV LRLFFTESES ESEERNF // ID A0A0D2ZXH8_BRAOL Unreviewed; 117 AA. AC A0A0D2ZXH8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo05499s010.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo05499s010.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo05499s010.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo05499s010.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo05499s010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo05499s010.1; Bo05499s010.1; Bo05499s010. DR Gramene; Bo05499s010.1; Bo05499s010.1; Bo05499s010. DR Proteomes; UP000032141; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13572 MW; A1E8277A99B30476 CRC64; RSTWKASSSQ SQNRFLTLAL KPFNLEKYIL YLPVRFSRSH GINEEAKMTL LDKNGVKWST DLRSEETSDR IRLVGGWQEF FKANCMKPGE SIIVKLIWEG DKSCVLKFCS KVKHETK // ID A0A0D3A2T3_BRAOL Unreviewed; 776 AA. AC A0A0D3A2T3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g011080.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g011080.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g011080.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g011080.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo1g011080.1; Bo1g011080.1; Bo1g011080. DR Gramene; Bo1g011080.1; Bo1g011080.1; Bo1g011080. DR OMA; PWESEVI; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 141 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 409 501 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 633 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 658 753 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 409 501 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 538 633 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 658 753 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 776 AA; 87759 MW; 1FA7ED39F7788F89 CRC64; MEKASLLTPA NPHFFQPLLT GFQSHLNIPV TFFCKHIEGK HEGRTVKLRS DSSDRTWIVK IEGHRLTQGW KEFAKAHDLR VGDVVIFRHE GDMLFHVTAF GTSFCEIQYA PSSIHVKVKE ESEEIGESSR REKESSSKPT CFSQYVTASN LSRGAVGVPL DFARRNGLNK GKRVIALRNQ EGKTWESKLK STRSGQVFIC RNWRSFCTAS KLKIGDSFPF KLLENTETPV FQLCSLSKVK PKKETLSETE EDNVVDKTET PRFVKITTTA SSLEIGKQNI PVHFTRANKL NKPGKIVLVD KDKVEWSMKL NQDSRSGTMY IMGGTAWKSF CAANEVVVGE SLTLELIRRG GILLLKFCSK MEQPPFKTKA RKHKRARVQR LTRESRSKDD VSNQEAKIAE SSSIQGFESE SNVSTLSTSV QHSEIIPVKF FSKHIEGKHE GKTVKLRSDS SDRTWKVKME GHKLTEGWKE FAKAHDLQVG DVVIFRQEGD MLFHVTAFGT SCCELQYVLS GSHDVKEESD VIGESSRREK ESSPSLTCFN QTVTAGSLSN GAVGVPLDFA RRNGFNKGGH KVVLMNQEGE SWESEVKCKR SGQVFICRSW RIFCTASRLE VGDSLQFKLL QNTETPVFQL SSHLKVKREE ETLSEEDNVV DKIEKPRFVT ITPSASNLEI GKQYLPVHFT RANKLDRPGK IVLVDKDKVE WSMKLKADIR STYIMGGKGW KSFCAANEVV AGESLTLELI RRGRIPLLKF CSKMEQPPFK TKTRERKRTR VQRLSQ // ID A0A0D3A2T4_BRAOL Unreviewed; 523 AA. AC A0A0D3A2T4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g011090.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g011090.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g011090.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g011090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013591092.1; XM_013735638.1. DR EnsemblPlants; Bo1g011090.1; Bo1g011090.1; Bo1g011090. DR GeneID; 106299556; -. DR Gramene; Bo1g011090.1; Bo1g011090.1; Bo1g011090. DR OMA; IESENCS; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 310 406 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 310 406 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 58876 MW; A8F14BA7ADCBABF2 CRC64; MVDPVMVSSN NKPIFFIDLS GQNSIPMIPD LFISNHVKGK TQSTKLKLTS DVSDRSWEVE LDGHRFARGW KQFSVHHGVR NDDVLSFRHD GDMVFHVAPF GRSFSHQIQF ISSTSEDKND DDEHNIFDDD VYDEEEEHAD VGDDDDDDDD KDSASEEELF PSSKKKAITE TETSLEDSYL VAHVTSSNLG RNQMGISNKF ARPNGLKDRQ CEIDLLNEEG KSWTLELRHN KTTGQSYMCR GWTSFCQGNG IKAGSACRFK LVKNGTKPVL QLCPNTSTIL HKKRDVPETD GDEIEYEDCL ETPQMNQNRT VAIEFKPHML RTGQLRLPTL FSRENGINEA GEVTLVNKDG VEWKLHLVSV KGRGQFYIRG FKDCFRAIGI KKVGDSFTLD VVRGGTSPIL KICSKIKEAS LDGNQTTNRR PSRMIQAPRA EEEMETRVQK KARVSAGGGS SRRTRASNKL SVGPANLQHK KPLEPCSISD QVNKVRQSIV HTLTDVRQFR SELEIKEQNL ETSLLEIDAL GMI // ID A0A0D3A2T7_BRAOL Unreviewed; 514 AA. AC A0A0D3A2T7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g011120.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g011120.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g011120.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g011120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo1g011120.1; Bo1g011120.1; Bo1g011120. DR Gramene; Bo1g011120.1; Bo1g011120.1; Bo1g011120. DR OMA; MLELICE; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 514 AA; 58440 MW; 521041BAAF6A3289 CRC64; MVIPPKPSLF HLKFLTGEKP LLTLDDEFLR NHTKVLLISD ASDKIWEVKL DGNRLAGGWE EFAAVNNFSD GNVLVFRHNG DEIFHVAVSS DIQHASPSFT DTDDTEVDDE ADGEDEDTDD DAWDVLVRKN KKPEADSCFL RARVTRYNLI KDRLDLSRDF KFLSFNKHNK PCEIYLANEK GRKWTLRLSR NISSGAFYIT RGWSNFCSAN GLIRGDFCYF KLSKSGERPV LLLCSHESGN GLEDKEEKRP EADPVKVCSV GGCTKEKNTP RILTLKYTPS RFKTGQLYIS PSFLLESGIR KSREITLLNK DGRKWPSYLQ MTGKSRSEWF YMRKGWREMC KANGVEVNDS FMLELICEDV TPIFKFHSKI ENKGACESVE KTQGVEIDGQ RGSKRGHTRV SNRSNTNSRK FQRTLPESCS VSDLVANVKQ RIQDTLNTLR HFRAEIETKE KNLEASLLQV DALGERILGI SKILNSNLQK HYLSTHSMNF MKAAAFGSSS LGSRISIDME VEDD // ID A0A0D3A2T8_BRAOL Unreviewed; 429 AA. AC A0A0D3A2T8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g011130.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g011130.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g011130.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g011130.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo1g011130.1; Bo1g011130.1; Bo1g011130. DR Gramene; Bo1g011130.1; Bo1g011130.1; Bo1g011130. DR OMA; RRTHASH; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 393 420 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 429 AA; 48851 MW; AF586762703E39BD CRC64; MAVPPSSPKS NTPFFVVSLA SHNSNPIIPD AFFTTHLDGN NELTKLKLTS DACDTTWQRG RGNDLPRHTF RKKFLSDSLY ISSSSDDSEA DETDDNTDDD DHDDETWDKV SYSRNYSPKK RSRLKTESSS IENSCILGVT SSNLRLNRVA LAKSFTKANG LHKSWCEINV MNQSGKSWVM GLRHNKGTGQ DFMRGGWRSF CRANKLRTGS FYRFEFVLTR TRRTLKLCSK AKVSAKPNRA GQRSSMNRSR FMTVTLKAYM LKSRQLHFRN SFARENGIKK GGKINLVDKN GGTWPSVCSV WWDNNWRDLH VKVCSRKRQN SDASVLLQGQ ETKVNTETRF QKKASVSVEG EPSRRTHASH KSTADSQNLE CKQPLETIYH QVRQSMMNVL ADVRRFGSEL EIKEQNLEAV LEEIDLLGEK VSEINKLFK // ID A0A0D3A2T9_BRAOL Unreviewed; 477 AA. AC A0A0D3A2T9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g011140.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g011140.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g011140.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g011140.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013620588.1; XM_013765134.1. DR EnsemblPlants; Bo1g011140.1; Bo1g011140.1; Bo1g011140. DR GeneID; 106327096; -. DR Gramene; Bo1g011140.1; Bo1g011140.1; Bo1g011140. DR OMA; SEDFKVM; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 477 AA; 54039 MW; 8CB9B88D9DF54114 CRC64; MVVPPKPSLF HWRFLTGVKP LLTLDDELLR NHTKVLLRSD ASDRIWKVKL DGNRLAGGWE EFAAVHSFSE GDVLAFRHDG EEIFRVAVSG ESDDNESDDT DDSESDESDD VEDEDNDEGD ILVEKNKKPE ADTSTGDSCF LRASVTPSSL IDDRLDFSED FKVMSFNKQN KCEIYLVNEK GRKWTLILSR NISSGAFYIR RGWANFCSAN GLSQGDICYF KLSESGERPV LLLCSHESGN GHEDKEEEEE EEEEEEFPEA DAVKICSVGC SKEKNTPSRL LTSEFTPNRF KTGQLTISSV FLRESGINKS MEITLLNKDG RKWSSYLQMS GQRGREMFYM RKGWREMCKA NGVEVNDSFV LELICEDATP VFKFHSKIEN KEKGDTVEKT PEVSKRGHAR VLNRSNSNLK RKQPESCSVS DQVANVKQSI QDTLNTIRHF KAELKTRENN LEASLLEVDD LGERILGISK ILNNNLV // ID A0A0D3A2U0_BRAOL Unreviewed; 494 AA. AC A0A0D3A2U0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g011150.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g011150.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g011150.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g011150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo1g011150.1; Bo1g011150.1; Bo1g011150. DR Gramene; Bo1g011150.1; Bo1g011150.1; Bo1g011150. DR OMA; ECPEADT; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 275 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 275 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 494 AA; 55415 MW; 5B3C8565945A2220 CRC64; MVVPPPQPSL FQLTFLTGDK PILQTLDDEF ISSHMKVLLI SDASDKIWEV KLDGNRLAGG WEEFAAVNNF SDGNVLVFRH NGEEIFHVAV SSESDDDESD DTDDSESDDS EDNDEVKIVV MIAGDSSLVN KEVDSSSDCF LRARVTPYSL TKDRLDLSKD FKFMLFDEHK KQFEIHLVNE KGRKWTLRLS RNISSGAFYI TRGWSNFCAA NGLIRGDFCY FKLSESGERP VLLLCSHESG NGHEDKEEEE CPEADTLKIC SVGGCSNEKN TPSRFLTRKF TPSRFKTGQL YISMLSSGVL RESGIKKSGE ITLLDNDGRK WPSYLHKTGQ PGGEWCYIRK GWREMCEANG VEVNDSFVLE LICEDANPIF KFHSKIKNKG KGNIVTSKKR ALHARTVERT PGVEIDGERG SKRGCTRVSN RSNTYLKGKQ PESCSVSDQV ANVRQSVLDT LNTIRHFKAE LKTRERNLEA SLLELDGLGE KILGISKILN NNLA // ID A0A0D3A387_BRAOL Unreviewed; 651 AA. AC A0A0D3A387; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g014600.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g014600.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g014600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013594669.1; XM_013739215.1. DR EnsemblPlants; Bo1g014600.1; Bo1g014600.1; Bo1g014600. DR GeneID; 106302756; -. DR Gramene; Bo1g014600.1; Bo1g014600.1; Bo1g014600. DR OMA; NDHEYRE; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 565 645 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 651 AA; 71906 MW; F489C19B6016B8D3 CRC64; MINVMNPMRS GSEKGLDPQL WHACGGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLKLIP LKDNDHEYRE GEDSNGLESN NSEKTPSFAK TLTQSDANNG GGFSVPRYCA EMIFPRLDYN AEPPVQTILA KDVHGEVWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD SIVFMRAENG DLCVGIRRAK RGGIGNNGVE YSAGWNPIGG SCGYSSSLLR DDERRSNYSS LADRKGKVTA ESVVEAASLA ISGRAFEVVY YPRASSSEFC VKALDARAAM RIPWCSGMRF KMAFETEDSS RISWFMGTVS AVSVSDPVRW PNSPWRLLQV AWDEPDLLQN VKRVNPWLVE LVSNVHPIVP SFSPPRKKMR LPQHSDYNAR ISVPSFASNP LIRSSPLSSV LDNVPVGLQG ARHNAHQYYG LSSSDLHHYY LNRPHPPPPP PTLTVPPPLG FRNIDSKNEK GFCFLTMGTT PCNDTESKKS HIVLFGKLIL PEEQKGSEKT QISSGGSNQN CVGGSSSDEG SPCSNKAHDG LGLETGHCKV FMESDDVGRT LDLSVLGSYE ELGVKLSDMF GIQKSEMLSS VLYRDASGAV KYPGNEPFSE FLKTARRLTI LSEQGSESVV V // ID A0A0D3A3G4_BRAOL Unreviewed; 348 AA. AC A0A0D3A3G4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g016360.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g016360.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g016360.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g016360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013589237.1; XM_013733783.1. DR EnsemblPlants; Bo1g016360.1; Bo1g016360.1; Bo1g016360. DR GeneID; 106297570; -. DR Gramene; Bo1g016360.1; Bo1g016360.1; Bo1g016360. DR OMA; CKRESAS; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39237 MW; 307862222726B589 CRC64; MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRNEVY FGQGWSKFVE DNRLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD KEDTNPSSEP EMAQTVPNAR NHEESNIIEP EVAQRVPRTR SKGKKRVVVQ DSDDSFISED SDSLSDSSYS PPNDDALLDV TPKVTNSRKK GELRSVNSNV GSTSNSSGSV SRKRQSTIKN PEVYLDDPNN VCFEIILKNR IYELTVPKQI VKDYCLKFQA YVCYIDNHES GTLEARVATW QDQRVSIKKW ERICQRNGLK KGDRLLCELF RKEGLVYAVK IHVVTTAS // ID A0A0D3A3J4_BRAOL Unreviewed; 351 AA. AC A0A0D3A3J4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g016660.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g016660.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g016660.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g016660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013638716.1; XM_013783262.1. DR EnsemblPlants; Bo1g016660.1; Bo1g016660.1; Bo1g016660. DR GeneID; 106343901; -. DR Gramene; Bo1g016660.1; Bo1g016660.1; Bo1g016660. DR OMA; RGDCKET; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 313 348 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 313 348 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 39471 MW; 1B1EEE137EAC32D7 CRC64; MALPGFFKIF LSHFSSESMV VPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRNEVY FGQGWSKFVE DNRLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD DDDKEDTNTS SEPEMAQTVP NATNQEDSNI VEPEVAQRVP RTRSKGKKRV VVQDSDDSFI SEDSDSLSDS SYSPPNDDTL LDVTPKVANS RKKGELRSVN SNVGTTSNSS GSVSRKRQST IKNPEVYLDD PNNVCFEIIL KNRIYELTVP KQIVKDYCLK FQAYVCYIDN HESGTLEARV ATWQDQRVSI KKWERICQRN GLKKGDSLLC ELFRKEGLVY AVKIHVVTTT S // ID A0A0D3A4E0_BRAOL Unreviewed; 1648 AA. AC A0A0D3A4E0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g021600.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g021600.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g021600.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g021600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo1g021600.1; Bo1g021600.1; Bo1g021600. DR Gramene; Bo1g021600.1; Bo1g021600.1; Bo1g021600. DR OMA; QEHINAP; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.10140; -; 1. DR Gene3D; 3.80.10.10; -; 3. DR Gene3D; 4.10.1000.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR011713; Leu-rich_rpt_3. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000157; TIR_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR000571; Znf_CCCH. DR Pfam; PF02362; B3; 1. DR Pfam; PF07725; LRR_3; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF01582; TIR; 1. DR Pfam; PF00642; zf-CCCH; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00255; TIR; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52058; SSF52058; 3. DR SUPFAM; SSF52200; SSF52200; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50104; TIR; 1. DR PROSITE; PS50103; ZF_C3H1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Leucine-rich repeat {ECO:0000256|SAAS:SAAS00492074}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Repeat {ECO:0000256|SAAS:SAAS00492321}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}. FT DOMAIN 221 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 374 463 TIR. {ECO:0000259|PROSITE:PS50104}. FT DOMAIN 1515 1543 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DNA_BIND 221 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 1515 1543 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. SQ SEQUENCE 1648 AA; 185257 MW; BE18EED40F9B61D8 CRC64; MDRLRALRRQ GLRDFEPSLP PRFMDRILDR MKKSLNRSGI SRRRLERCSS SFAEDLSVST SSFATRSLEL PDRTSFRLLA AGGDGELDRI YKSLGVSGPD DLAISFDAWE ASKMRSSSGI VNRFQPQADV LSSGVDSLDR DNTGGVGRFF KEHASEKASE KERGEMNLNP NYHDDVREDL FEICLTTIDV SNVDRLAVKA NKDAGKYFLL ATVVAGTDSR LRFEDEEGKT WLFGFSYLNV SQCYEFTQGW SSYVEEKQLK AGDFVSFQRD RKDSSKLFIG CRKSDESFPN PTSPGASIKT VEMREKLKGV ETPFQPKLSE HSVTGSDPVL VIYCGDKQVS EEIYLISYIF NELCRCGFSP LRYDMKKGTV TENQKLLHIS RVGIIIFSMN FAHSRECLDG FVAVMDHLKA NDLVLIPVFF KVSVSAVRGQ LGSFGRAFIR LRNSVKASEV LKWRAAMIEL TSISGYAYKK GDEVILAKNI VRAVCLPLSS ETNMKLRGTR LSLESILSLL NRSQPSSPQI VGLWGMAGIG KTTITREFFR TQAERYDVCY FLPDFHLMCQ TKGLSYLRDD FFSKIFGAEK VFVDACDTKL RFTRDRFLGK KVLIVLDGVS SAKDAEVLVG GFGWFSGGHT IILTSRNRQV LVQCNAKVIY EIEKLSKLES LHLCCKFASK ENCKGRMSLT SELVDYASGN PLALRVLGLS IQNQSMKDQK QHLRRLRQHP PVKILDAFKI SFNGRDGDEK SIFLDLACFF RGEDRDRVVK ILDGCGFSTD LGIYGLIDES LISLLDNKIE MPNIFQDAGR FVVCQEHEEP GNRSRLWDSS DIAGVLKNNT GTEAVEGIFL DASGLTFDLI STAFERMYRL RLLKIHCPTS VNHCKVCLPE GLHSLPDELR LLHWEKYPLG SLPRNFNPKN LVELNMPYSN LTKVWKGTKN LEKLKRIILS HSQQLTKFPR LSKARNLEHI DLEGCTSLVK VNSSILHHHK LTFLSLRNCS RLRVMPTTVH LKSLEVLNLS GCSELENLQD FSLNLKELYL AGAAIRELPS SIGDLTRLVT LDLENCESLQ HLPPGISNLK AMMTLKLSGC SNLKSLPVLD ALFLQDSQRS NTRITMEESV SINLHSAIQE SSREALEEFL PAFECLSNNG IPQESWTWVT VIPFPSPILH SLASRLYALV SLFLCNAYLV DIPEDICWLA SVMRLDLGGN SFSQIPKSIK EFRKLLSLNL RHCKNLKSLP ELPRSLVTLN AHGCVSLKSF PTSFEQFPRH FTFSNCFNLS PKVVRKYIGK ALDSVKGMAK RILQASLEQE HINAPAFSIC IPASAGHQSS FNFQAGSVVR RQLTPGMLKT LSGFALSVVV EFWDNYSNNA GFGIKCICRK TRTDLSPRLE RIFHCWAPKE PITVQRDHMF VFGSVKMHHA EAVNHDFLSD SVTFEFHPVN SENQLLGDSC TVKRCGVYLI TDATGNTTLS AKRPSSSMDS GGLSSMEHVA PPYKRCRLKG VIEIVILSLR KRKREMSVPT VKSFSKVKSL CRSYVRTGNC AVGPSCSFDH PTWVFTEKPK RLSASKSNQA TSGKDAIDTE QEEESILVQF LLRDGSKHQD ARSYNPDSHR LQLKKCREQH LITRQGIVLI QARWTKATEV LVLSMGIILE YRGSTTMI // ID A0A0D3A4V6_BRAOL Unreviewed; 723 AA. AC A0A0D3A4V6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g024250.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g024250.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g024250.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g024250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013601765.1; XM_013746311.1. DR EnsemblPlants; Bo1g024250.1; Bo1g024250.1; Bo1g024250. DR GeneID; 106309266; -. DR Gramene; Bo1g024250.1; Bo1g024250.1; Bo1g024250. DR OMA; CASAYEQ; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 339 440 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 339 440 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 80517 MW; 6B0B742130C7CBDB CRC64; MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CASAYEQGRF CDIFHQRASG WRCCESCGKR IHCGCIVSAP AFMLLDAGGI ECLTCARKKV SVGPNFRPPP PSFLFQSPIS EKFQDLSIDW NSSTRSYRPP NLSGPSIRQS DRGDCYEFNQ PTSKDKATAY STEKHRGMND LMGKLMSVNS NNHTNSILYN QKAGPNCKVP TCPNVNAAYP PLISLKEGPL VGAQRAFPVT TPVETNGHLG LGGRYLWHKA NSSPLSHLHN DLNNGADSPL ESKNWNFGIH LDTPGKYQVV PRYSPKVPYK NQVLQNLPNE SVSVVTPLFE KILSVSDAGR VGRMVLPKKC AEAFLPQISQ TDGVPLTVHD STGKEWTFQF RFWVNNNSRM YFLEGITPCI QSMQLQAGDT VIFSRADPEK KLIMGFRKAS VAQSSVQETE LNNNRESCTN GDAEPIDIHP PNGKKKSSMT TTRSKRQKVE KGELSELKLT WEEAQGFILP SPNLTPSIIT IEGIEFEEYE DAPIIGKPNT GFGSTCSANK GLLAEQDDEE AKDEAEGLLM SPKSTSKHPR HRNGCTCIVC LQSPSGSSPK HGRRCSCTVC DTVRRRRETL LQRKKKQQQS EIENKAHKGM ESPNSEEERH QSVNNSGTTS KDYERHASPP SKAQIDLNFQ PEKDEESPLP RSKTTTKDKS LHHDEARSSS SAHNKLHVDF ADS // ID A0A0D3A5S7_BRAOL Unreviewed; 609 AA. AC A0A0D3A5S7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g037360.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g037360.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g037360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013619833.1; XM_013764379.1. DR EnsemblPlants; Bo1g037360.1; Bo1g037360.1; Bo1g037360. DR GeneID; 106326384; -. DR Gramene; Bo1g037360.1; Bo1g037360.1; Bo1g037360. DR OMA; EAMNNKF; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 497 597 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 609 AA; 69110 MW; 3C12D40CD9C6E9A5 CRC64; MTIGEEMYEE LWKLSAGPLV DVPQAEERVY YFPQGHMEQL EASTQQDLNT MKPLFDLPPK ILCRVMNVRL QAEKETDEVY AQIMLMPEGT VDEPMSPDPS LPEPQRPKFH SFTKVLTASD TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAEDVHGY KWKFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDTFVFLR GENGELRVGV RRANRQQSSM PSSVISSHSM HLGVLATACH ATQTRSMFTV YYKPRTSQFI ISLNKYLEAM NNKFSVGMRF KMRFEGDDSP ERRFSGTVVG VQDCSPHWKD SKWRSLVVNW DEPASFTRPD KVSPWEVEPF AASENVPQSV NKRPRHVNEI SALGVGVPAS NFWSSALTQS HEFAQSCITS QRNPPQNSDW PVTPYSTLNG QMVFPVEQKK PEIIASCRLF GIDLMSSSLP AHEEKTAPMR PINITKPTLD SNTDPKSEIS KLSEEKKQEP AQASPKEVQS KQINSSRSRT KVQMQGVPVG RAVDLTLING YVELIDDLEK LFDIEGELKS RNQWEIVFTD DEGDMMLVGD DPWPEFCNMV KRIFIWSKEE VKKMTPGNQL RILLAEVDTT ISKTENYSD // ID A0A0D3AA64_BRAOL Unreviewed; 662 AA. AC A0A0D3AA64; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g090350.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g090350.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g090350.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013605280.1; XM_013749826.1. DR EnsemblPlants; Bo1g090350.1; Bo1g090350.1; Bo1g090350. DR GeneID; 106312327; -. DR Gramene; Bo1g090350.1; Bo1g090350.1; Bo1g090350. DR OMA; KRWQVVY; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 539 632 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 662 AA; 73479 MW; CC09F4B822A55059 CRC64; MAASNHPSGK PGGALSDALC RELWHACAGP LITLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRKAEPETDE VYAQITLLPE ADQSEPMSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKNQKLAV GMRFKMRFEG EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANNT LSAHLPPQRN KRPRPPGLLS PTTAPSTPDG VWKSPADNPS SVPLFSPPAK TAALGLGGNK SFGVSIGSAF WPTHADGAAE SFASALNNES PTEKKQTNGN VCRLFGFELV ENMNVDECFS AASVSGAVAV DQPVPSNEFD SGQQSESLNI NQANLPSGSG DHEKSSLRSP QESQSRQIRS CTKVHMQGSA VGRAVDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLTVNVRMQ PKTDADENGN TEGRSSSMAG SR // ID A0A0D3ACE5_BRAOL Unreviewed; 343 AA. AC A0A0D3ACE5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g115980.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g115980.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g115980.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g115980.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013604063.1; XM_013748609.1. DR EnsemblPlants; Bo1g115980.1; Bo1g115980.1; Bo1g115980. DR GeneID; 106311392; -. DR Gramene; Bo1g115980.1; Bo1g115980.1; Bo1g115980. DR OMA; DGRSKFS; -. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39634 MW; DCE1406D931B89A8 CRC64; MPRPFFHKLI FSSTIQEKHL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSTGL MDSAHNHFKR ARLFEDLEDE DVEVVHPSPL YPSQHPETTA HANKGHTSSA IQSFFAEPPV KAEETTPTPK VPKKRGRKKK NADPEEINSS APRDDDPENR SKFYESASAR KRTVTAEERE RAINAAKTFE PTNPFFRVVL RPSYLYRGCI MYLPSGFAEK YLSGISGFIK VQLGEKQWPV RCLYKAGRAK FSQGWYEFTL ENNLGEGDVC VFELLRTRDF VLKVTAFRVN EYV // ID A0A0D3AFF9_BRAOL Unreviewed; 207 AA. AC A0A0D3AFF9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo1g150380.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g150380.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo1g150380.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo1g150380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo1g150380.1; Bo1g150380.1; Bo1g150380. DR Gramene; Bo1g150380.1; Bo1g150380.1; Bo1g150380. DR Proteomes; UP000032141; Chromosome C1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 207 AA; 23711 MW; 1D9DD756718F8694 CRC64; MEEISVWLRV KHWSFSTEAG KKSPNEERRL LSRRSEGESR DNRRLFPRRT TAICLRRLNK MANPHEPHFF KPLLPGFQSG VTIPLAFFSK HIEGKTNQKT WKLRSDASDQ TWEVIQEDRT LTRGWKDFTT AHDLQIGDLV IFKHEGDMVF HVTPFGPSCC EIQYTHPHII KEEADAGDAD DNEIRGTEAM SSVSLACVSL ATYLGLV // ID A0A0D3AK85_BRAOL Unreviewed; 1174 AA. AC A0A0D3AK85; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g023110.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g023110.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g023110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo2g023110.1; Bo2g023110.1; Bo2g023110. DR Gramene; Bo2g023110.1; Bo2g023110.1; Bo2g023110. DR OMA; NDIAMND; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1002 1095 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1174 AA; 129795 MW; 6A88F8BDF7C938AB CRC64; MKAPSPNGVS PNPVEGDRRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET DEVYAQMTLQ PVNKVGYLPL YNSVLDSVLK IGYDRDALLA SDMGLKLNRQ PNEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPALDFSMQP PCQELVAKDI HDNTWTFRHI YRGQPKRHLL TTGWSVFVSN KRLFAGDSVL FIRDGKAQLL LGIRRANRQQ PALSSSVISS DSMHIGVLAA AAHANANNSP FTIFYNPRAA PAEFVVPLAK YTKAMYAQVS LGMRFRMIFE TEECGVRRYM GTVTGISDLD PVRWKSSQWR NLQIGWDESA AGDRPSRVSV WDIEPVLTPF YICPPPFFRP RFAGHPGMPD DETDMESALK RAMPWLDNGL EMKDSSSSIF PGLSLVQWMS MQQQNGQLPS AASAAQSGFF PSMLPPTSGM HNNLGGTDDP SKLLSFQTPP GGISSANLQF NKPNPQASMS QLPQPPTTLS QQQQLRQLLH SSLNHQQQQS QSQQQQQRLQ QQHHQPLQQQ TQQLQQQQQQ QQQQLQSHSH SHLLSQSKPQ PQQLEPHQLQ QFQLQQNQLP QNQLYNGQQA AQQQHQAQQA SMHHLQPPVV SVSMASSVIV PPSSSLNQNC QQQQQQSTQL QHTHRHLGAS TSQSSVIETS KSSSSLMSIP PQDTQFPRQL EQQQPPGLVN GPNQQHKAQQ IFQQSLLEQP HLQFQLLQRL QQQQQQQQQF LMPGSSSLQS QLLHQQLQQP PPQMLVSRPH DKQNPLVGGG GVKAYSGITD GGDAPSSSTS PSTNNCQISS SNFLNRTQSG PPTLMPDAAV DISGNLVQDL YSKSDMRLKH ELAGPQKSKA SLTDHHHQLE ASASGTSFLA PTFGLESDSR NSLLGGGANV DNGFVPDTLL SRGYDSQKDL QNMLSNYGGV ANDIGTEMST SAIRTQSFGI PNVPAISNDV AVNDAGGVLG GGLWPTQTQR MRTYTKVQKR GSVGRSIDVN RYRGYDELRH DLARMFGIEG QLEDPQTSDW KLVYVDHEND ILLVGDDPWE EFVNCVQSIK ILSSAEVQQM SLDGNFAGVP VTNQACSGGD SGNAWRGHYD DNSATSFNRF PLDTVEYSPV RVYTLHEDFI SLACILMVRV ALSIQLSVRF QFDS // ID A0A0D3AKR0_BRAOL Unreviewed; 606 AA. AC A0A0D3AKR0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g024860.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g024860.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g024860.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo2g024860.1; Bo2g024860.1; Bo2g024860. DR Gramene; Bo2g024860.1; Bo2g024860.1; Bo2g024860. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 606 AA; 68317 MW; C2AE9777254D550A CRC64; MLNEEGKEVR QERNGSSSVK RTTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSHELIAK DLHGVEWKFR HIYRGQPRRH LLPTGWSIFV SQKNLVSGDA VLFLRDEDGE LRLGVRRSAR PRNGLPDSVT EKNSCSNILS LVANAVNTKS MFHVFYSPRA THAEFVIPYE KYITSIRKPI SIGTRFRMRF EMGDSPERRC AGVVTGVCDL DPYRWLNSKW RCLLRCFTLD PETDVPKNIL KSGYEPTTGD PEQREHCGKI LSQFLDGTLS KAFGRQEQLN DSRTIAKSGR KRPLLPKFRS DIHEQWSRDC VTRSAGLTQM LSRSGFSTNF KRRSDGEDSR RQGGGDERSC GDDAENQGKD SLQTRRRNEV EDAGVDGSHE EQEGRRRRRW PKAPPASKME SVRPSKVLQG QENIGSASSP LQGFDVMNLR THANPVLLPS RVKERFGDST PLDPACSSGV MDLDSFPRVL RGQEVCSLRS FPQLAAASGK SIIGYTSPFA YQDNKSSFYP LASQWIRSMH IPYQNPYKAA NKSVGHPSCA INFGGVTRNF DAQNEGGLPK NVTADLPFKI DMMVKQKGGC RLFDSPYLWR HQLHLT // ID A0A0D3AKT2_BRAOL Unreviewed; 296 AA. AC A0A0D3AKT2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo2g025080.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g025080.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g025080.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g025080.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013614519.1; XM_013759065.1. DR EnsemblPlants; Bo2g025080.1; Bo2g025080.1; Bo2g025080. DR GeneID; 106320696; -. DR Gramene; Bo2g025080.1; Bo2g025080.1; Bo2g025080. DR OMA; DKMICEL; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 296 AA; 33252 MW; 74B00D3D08BB4BC7 CRC64; MKLVTPENDC VTKFFRVYMP GISGDDLELP VCFNSFLPKP LPKHVTLKSI YGKIWKMTLR RCGGDPERYM LVNGWKRIAK DESLTTGNVL EFQLDDDGSL CFNFSIYEPL TMCKRLGTTT SVQETENADD VLVLSDDDDD EDSDYSCADD TDASAEDDDH GVAAGDEDVA LDGSDDDAEA NHDDDRRYLD DRSNAFFRVK INPKKISQLR IPSKVINDYG LSFSETESIV IIDPLVKKFG KLSKKMKVQT NGSVFIKGYG AVYRRNGVRS TDKMICELKK AGNNNVVHTI KFHVIK // ID A0A0D3ALD8_BRAOL Unreviewed; 291 AA. AC A0A0D3ALD8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo2g029120.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g029120.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g029120.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g029120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013619395.1; XM_013763941.1. DR EnsemblPlants; Bo2g029120.1; Bo2g029120.1; Bo2g029120. DR GeneID; 106325892; -. DR Gramene; Bo2g029120.1; Bo2g029120.1; Bo2g029120. DR OMA; KIFNSHE; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 33098 MW; 91DCB7CB495FEFC7 CRC64; MVFTPYPDFL IIYNSKDVSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWAVKWGISP EEEISFGDGW STFIAENDPL DGDFLQFSYD GSRSFMVSIF RGGLPVKPKA PVTIQDISDD DDEDKTAGDD GNEKKEEDYD QNMIISLSLG SSDEEYDADK TVCEVNKAHR TLERGSSSQR IRAQSIGDPE MYLDDPKNPC FIATSSSCRR MLVIAMQVIK DYDLKFDGTI KFIDGFGELE GKIGNWKDRV VVYPWQEIYQ RNHAKPGDVI ICEILREGDV VRSIKAHFVK K // ID A0A0D3AP31_BRAOL Unreviewed; 343 AA. AC A0A0D3AP31; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo2g061320.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g061320.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g061320.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g061320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013619115.1; XM_013763661.1. DR EnsemblPlants; Bo2g061320.1; Bo2g061320.1; Bo2g061320. DR GeneID; 106325616; -. DR Gramene; Bo2g061320.1; Bo2g061320.1; Bo2g061320. DR OMA; NTNIATF; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 183 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 183 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 38283 MW; C954714154EDBFB4 CRC64; MVFSCIDESS STSESFSPAT TTAAKFSAPP LPPLRLNRMG SGGSNVVLDS KNGVDIDSRK LSSSKYKGVV PQPNGRWGAQ IYVKHQRVWL GTFSDEEEAA HSYDIAARKF RGRDAVVNFK TFLASEDDNG ELCFLEAHSK AEIVDMLRKH TYADELAQSN KRNGANTNTT QSDTVSRTRE VLFEKVVTPS DVGKLNRLVI PKQHAEKHFP LPSLSVTKGV LINFEDVTGK VWRFRYSYWN SSQSYVLTKG WSQFVKEKNL RAGDVVTFER STGSDRQLYI DWKRSGPSKN PVQVVVRLFG VDIFNVTSTK PSNVVDACGG KRSRDVDMFA LRCSKKHAII NTL // ID A0A0D3ASD4_BRAOL Unreviewed; 481 AA. AC A0A0D3ASD4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo2g100580.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g100580.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g100580.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g100580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo2g100580.1; Bo2g100580.1; Bo2g100580. DR Gramene; Bo2g100580.1; Bo2g100580.1; Bo2g100580. DR OMA; ANTIFRS; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 481 AA; 54332 MW; 0C7A00E909CA67B8 CRC64; KSSVPFEICL FSSHSLSVPY LFYPQEILSS PCHSLSLIPS DRVPLAMAST DSLPRFFKVF ISHFSSDSML IPISYYDELP RHLPKTVILQ GTGGCLWKVA MRLKQEEEEV YLEQGWPKFV KDNALVDGDF MTFVYNGDNI FEVSIYGLDG CKQARAMAEE EEEGKDSICA LSSDDTEDTN AESESANTVQ RSNDKGKAKV EADDDEEEED SVYSLSNSKD TDTGTSSEFE MANTIFRSKT KGKSKEEVIK EESDGKEDSD HSLNSEVKET DTGSESRIPK NKGKKKKEVV ESSDSDYAED FGRLDLDLEE DSTSSDSSYA PDSDEDTATH VKRKVVTKGS QGKSKVIKDV AEVGDTSCAV ERVPKTREKV KAIIENPEVY LDDPTNIHFE TGVKNRKHEL LVKDYCLRFK DYIYYLDPKG KLEAKTAKWK DQRVCIKKWV KICDRNKLKK QDRVVCELLR NKDLVYAVKI HIIRGKHLVS V // ID A0A0D3ATG3_BRAOL Unreviewed; 227 AA. AC A0A0D3ATG3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo2g116250.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g116250.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g116250.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g116250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013620049.1; XM_013764595.1. DR EnsemblPlants; Bo2g116250.1; Bo2g116250.1; Bo2g116250. DR GeneID; 106326676; -. DR Gramene; Bo2g116250.1; Bo2g116250.1; Bo2g116250. DR OMA; HYERVMI; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 25949 MW; 3AC29BE731546040 CRC64; MVVAKQSPYE EFRLRRLEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV RRSSRISNAS SSSPVYKEVV VQRVHLPRRV SKGRDLSNRV YVSEEIREEA FSKAEKLQAD LRNRFPSFVK SMLQSHVSGG FWLGLPVHFC RSELQKQDGV ITLIDEEGEE FEIVYLAKRT GLSGGWLGFA VSHNLVYGDA LVFELVRPTV FKVYITRVKS SGESLKM // ID A0A0D3AVW7_BRAOL Unreviewed; 349 AA. AC A0A0D3AVW7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo2g138650.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g138650.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g138650.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g138650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013619184.1; XM_013763730.1. DR EnsemblPlants; Bo2g138650.1; Bo2g138650.1; Bo2g138650. DR GeneID; 106325668; -. DR Gramene; Bo2g138650.1; Bo2g138650.1; Bo2g138650. DR OMA; KHTYLDE; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 195 299 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 195 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 39152 MW; 6B7A3DD204F9C076 CRC64; MEAVSSVDES STSTVSIHTP AKITPPPKTA KSSSPASLYR MGSGSSVVLD SQNGVEAESR KLPSSKFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA ARVYDVAAHR FRGSDAVTNF KPDTTFRNGE GDGDEVKFLN AHSKYEIVDM LRKHTYKEEL EQRKRKRNGG NGDTEETAFA NVTVVTGFKT AECLFEKTVT PSDVGKLNRL VIPKHQAEKH FPLPLTGDVS VRGTLLNFED VNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKRLCAGDLI SFKRSNGQDQ QLYIVWKSKA GLEQDTGRVV VRLFGVDIAS VKSRNDVVMK EETEMSLSSN KKQRLVTTI // ID A0A0D3AXN0_BRAOL Unreviewed; 271 AA. AC A0A0D3AXN0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo2g158640.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g158640.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g158640.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g158640.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013621349.1; XM_013765895.1. DR EnsemblPlants; Bo2g158640.1; Bo2g158640.1; Bo2g158640. DR GeneID; 106327674; -. DR Gramene; Bo2g158640.1; Bo2g158640.1; Bo2g158640. DR OMA; IEEDWNE; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 31035 MW; 74D6540254D524E8 CRC64; MALNGVFDFL QENVKKPRFC KSLPLGENWK SKSMRIIPEE FVRSAHGAFE HRLVFSVSWG NSWQVWLHRD KNGLFMEEED WNEFVDDNLL CPNDILLFTH VDTMFTEVRI YKKDLPFFKQ VISAPQVLNP KPKAPSSAPP GFAPFASSAS ASASRARQSS SPVQNPEQYL VNPQNPYFVK TLSKKIDVLY VNQEVIQRYG LKFGPHLSLV HYLLPGEKHE AVIKIYRNAP CFNRWAAICK KYNKKEGDSV VCELERSSGV VTAVRVHFVD E // ID A0A0D3AY98_BRAOL Unreviewed; 832 AA. AC A0A0D3AY98; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g161810.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo2g161810.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo2g161810.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo2g161810.1; Bo2g161810.1; Bo2g161810. DR Gramene; Bo2g161810.1; Bo2g161810.1; Bo2g161810. DR OMA; AIYRELW; -. DR Proteomes; UP000032141; Chromosome C2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 714 798 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 832 AA; 92898 MW; AE10C2B8B52114F0 CRC64; MTSSEVSVKG NHGGGGGENA ASVVAGEGQK SNLNRVVDEE AAIYRELWHA CAGPLVTVPR RDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEV DTDEVYAQIT LLPEPNQDEN AVEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHANEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATASHAIS TGTMFTVYYK PRTSPSEFIV PFEQYMESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK SKWRSLKVRW DETSSIPRPE RVSPWKIEPA LAPPALSPVP MTRPKRPRSN MALSSPDSSM HIKEGASKAT LYPLPASGLS SVLQGQEYPT LKTKHTESVQ CDAPENSVVW QSSADDDKVD VASRRFENWM SSGRHETAYT DLLSGFGVNV APSHGHQTPF YDHSSSPSVA AKKILSEQDA KFDYLANQWQ MMNSGLSLKL NDSPKIPSAS DASFQGRGNA TYGEYPVLHS LTTETAGGNW PIRPRALNYF EESVHAQTQT QAREHVTERP QMVQEETAKS RDGNCRLFGI PLVNNVNETD STMSQRNNLN ENSGFTQMAS PKVQDLSDQS KGSKSTNDHR EQSRPSQPNH PRRKDGHSKT NSSRSCTKVH KQGIALGRSV DLSKFQNYEE LIAELDMLFE FNGELMAPKK DWLIVYTDDE DDMMLVGDDP WLEFCCMVRK IFIYTKEEVR KMNPGTLSCR SEEEAVVGEG SDAKDAKSAF CI // ID A0A0D3AZ76_BRAOL Unreviewed; 353 AA. AC A0A0D3AZ76; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g001110.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g001110.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g001110.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g001110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013627322.1; XM_013771868.1. DR EnsemblPlants; Bo3g001110.1; Bo3g001110.1; Bo3g001110. DR GeneID; 106333426; -. DR Gramene; Bo3g001110.1; Bo3g001110.1; Bo3g001110. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 39934 MW; 487452F25F500BA4 CRC64; MDLSLAPATN SDQEQDRDKE LNSNIGASST SGTGNDSNFP MMMTIPQPEK EHMFDKVVTP SDVGKLNRLV IPKQHAERYF PLDSSNSQNG TLLNFQDRNG KMWRFRYSYW NSSQSYVITK GWSRFVKEKK LDAGDIVSFQ RGIGDESKRL KLYIDWRHRP NMMTVIQTHN QFGNFGFNFN LPTTSQCFNR FHPLPEYNTV PIHRSLNHQR SYYNNNHGQE FVGYGYGNLA GRCYYTGGSP FDQRSIVGSE PLVIESVPVV PGRLTPVILH PLPPPSMEGK RLRLFGVNME CGNNDNNQQE ESWVLPRGEM GASSSSALRL NLSSDHDDED DDGDGDGDGD DQFAKKGKSS RFL // ID A0A0D3AZZ5_BRAOL Unreviewed; 278 AA. AC A0A0D3AZZ5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g003800.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g003800.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g003800.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g003800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013628242.1; XM_013772788.1. DR EnsemblPlants; Bo3g003800.1; Bo3g003800.1; Bo3g003800. DR GeneID; 106334498; -. DR Gramene; Bo3g003800.1; Bo3g003800.1; Bo3g003800. DR OMA; NMNIGFT; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31695 MW; 2AA314C26F83E14C CRC64; MSVNHYSTDN HHTLFWQNLH TTDTSEPTTT AAAWLSEDQK EYLFEKSLTP SDVGKLNRLV IPKQHAEKYF PLNTTISDNA DEKGTLLSFE DESGKCWRFR YSYWNSSQSY VLTKGWSRYV KDKQLDPADV VFFQRQRSDS RRLFIGWRRR GQSSSSAANP TSYSSSMTAP PYSNYSNRPA HSEYSHYGAA VATATETHSI PSSSAVRSSR TVRLFGVNLE CQMDEDDGDD SVATAAAAEC PRHDSYYGQN MYNYYTPQPH NMNIGFTGDT MKQVEDRR // ID A0A0D3B0R9_BRAOL Unreviewed; 230 AA. AC A0A0D3B0R9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g007530.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g007530.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g007530.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g007530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g007530.1; Bo3g007530.1; Bo3g007530. DR Gramene; Bo3g007530.1; Bo3g007530.1; Bo3g007530. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 25943 MW; A47C1E6E779C8A48 CRC64; MDGRDFGLVT RKTLVILDRS RKKKSRRRKA IALSTKRRRI PRRQTTIPAA NDGDLSPSTE QGFQKELGIN SILILFTFVS CLQMANPHEP HFFKPLLPGF QSGVTIPLAF FSKHIEGKTN QKTWKLRSDA SDQTWEVIQE DRTLTRGWKD FTTAHDLQIG DLVIFKHEGD MVFHVTPFGP SCCEIQYTHP HIIKEEADAG DADDNEIRGT EAMSSVSLAC VSLAMYLGLV // ID A0A0D3B3K5_BRAOL Unreviewed; 150 AA. AC A0A0D3B3K5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g022340.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g022340.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g022340.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g022340.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g022340.1; Bo3g022340.1; Bo3g022340. DR Gramene; Bo3g022340.1; Bo3g022340.1; Bo3g022340. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 124 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 150 AA; 17171 MW; CF4EE17E8968896F CRC64; MSTTRTTPVQ EPTETGASGS GNNNFNSAVG EHMFDKVLTP SDVGKLNRLV IPKQHAENYF PLEDNQTGTV LDFEDRTGKI SQSYVMTKGW CRFVKEMKLE SGDIVSFHRG YVPDDNEPEK RKNIFFIDWR HRANTNLVHN INYHHYPLLG // ID A0A0D3B418_BRAOL Unreviewed; 266 AA. AC A0A0D3B418; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g023970.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g023970.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g023970.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g023970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g023970.1; Bo3g023970.1; Bo3g023970. DR Gramene; Bo3g023970.1; Bo3g023970.1; Bo3g023970. DR OMA; LSGCKEM; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 266 AA; 30145 MW; 5B256C502D57795C CRC64; MSESEEEVDL PRFFKVFLSE TASESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGLSGCKEMR AVVETVNLSD ANSDEEEEEG DDDPSFDAGE DDEVSQGLCP VDSDETVSNA EGFSSLEVES NPCFTTTLKN RIYELLIPAI VVKEHRLTFC DRIKYIDGEG IMYGAKGKWS DDRICFKGWD RICRRNRLKE FDVVHCEMLH IRKKVHSIKI TITRGR // ID A0A0D3B485_BRAOL Unreviewed; 780 AA. AC A0A0D3B485; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g024640.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g024640.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g024640.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g024640.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013630357.1; XM_013774903.1. DR EnsemblPlants; Bo3g024640.1; Bo3g024640.1; Bo3g024640. DR GeneID; 106336157; -. DR Gramene; Bo3g024640.1; Bo3g024640.1; Bo3g024640. DR OMA; CCAPEES; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 292 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 535 585 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 292 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 780 AA; 85509 MW; 0367E01E2B88FC67 CRC64; MFEVKTGSKV CMNASCGSTS TVEWKKGWPL RSGSLADLCF RCGSAYETSL FCETFHLEQS GWRDCYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNCH QLNLNKRGEN PVVFSRLAMN SQHTNGESGI SSIRSEADLF SQPLVPGDDK REEFMAQRGF ANFMKPDNNN AGEMHEPSST PSQPSLNMAL ATLPYSPSFA TPVVDGKTLM GAASQSQSHI GQCSASSILQ KPSKSVPGTP PGTSKSAQAR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNLNLNIVP LFEKTLSASD AGRIGRLVLP KACAEAYFPP ISQSEGIPLK IQDVRGKEWT FQFRFWPNNN SRMYVLEGVT PCIQSMMLQA GDTVTFSRVD PGGKLIMGAR KAAYTVDMQG CGLTNGTSNE DTSSSGVTEN PTSINASSCP SQTPEELKGL PEHLSLKKSE MNGGRICDDP SRVKDKKRTR TIGAKNKRLL LHSEELRVTW EEAQELLRPS PNAKPTVVVV EDHEFEEFDE PPVFGKRTII TSRPSGEQER WASCDDCTKW RRLPVDALLP AKWTCSDNVW DVSRCSCCAP EESLKDLENV LRAGKEYKKR RIQAAKTEEE PSGLDALASA ASAAVLGDAL GGDSEVATTT RHPRHRVGCS CIVCIQPPSG KGRHKPTCGC TVCSTVKRRF KTLMMRRKKK QLERDEIAAA AEAYEEHNNK EAAEQGETDE NNGEKEGRID LNCDPYNRED VEAVKEESKR RECSGVADDV LGLTELGGEA ASCEELKAAT // ID A0A0D3B4F4_BRAOL Unreviewed; 379 AA. AC A0A0D3B4F4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g025330.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g025330.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g025330.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g025330.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013628153.1; XM_013772699.1. DR EnsemblPlants; Bo3g025330.1; Bo3g025330.1; Bo3g025330. DR GeneID; 106334417; -. DR Gramene; Bo3g025330.1; Bo3g025330.1; Bo3g025330. DR OMA; RRCKMIL; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 285 379 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 285 379 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 379 AA; 42960 MW; 346927C356AADB72 CRC64; MAKRHFFQPL LPGFHSHLTI PVAFFSKHIQ GRNDQKTTTE LRSDAASEKT WEVKTEDGRR LTDGWKEFAL AHDLRVGDIL IFRQEKDMTF HVTLFGPSCC EIQYDSCLDD KNSIGKINSK KNNPKREAEC SSSSDPSCFL ANVMPSTLRY DSLNLPRSFV RANGLETRCG DIVLINGKGR SWTLSLKQRQ CGRSYITRGW RSFFSANGLK AGDSFTFKLI KRGGTLVLLH KSPSHRESKE NEGSEADDEI ESLSTESDSD EESNQDEKKR ISIWNASSSP SLNRFVTLTL KPYNVIKRVL FLPKPFTDLH GITVGTKMSL VDKQGVKWCT KLRSESKRIR MAGGWKDFFK ANCVKTGESI KLKLIWEEDT SCVLSSKPR // ID A0A0D3B5V2_BRAOL Unreviewed; 134 AA. AC A0A0D3B5V2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g034270.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g034270.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g034270.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}, and RC TO1000 {ECO:0000313|EnsemblPlants:Bo00774s040.1, RC ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g034270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. RN [3] {ECO:0000313|EnsemblPlants:Bo00774s040.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013590770.1; XM_013735316.1. DR RefSeq; XP_013613869.1; XM_013758415.1. DR RefSeq; XP_013627138.1; XM_013771684.1. DR EnsemblPlants; Bo00774s040.1; Bo00774s040.1; Bo00774s040. DR EnsemblPlants; Bo3g034270.1; Bo3g034270.1; Bo3g034270. DR EnsemblPlants; Bo6g068110.1; Bo6g068110.1; Bo6g068110. DR GeneID; 106299188; -. DR GeneID; 106320049; -. DR GeneID; 106333214; -. DR Gramene; Bo00774s040.1; Bo00774s040.1; Bo00774s040. DR Gramene; Bo3g034270.1; Bo3g034270.1; Bo3g034270. DR Gramene; Bo6g068110.1; Bo6g068110.1; Bo6g068110. DR OMA; FSKHIER; -. DR Proteomes; UP000032141; Chromosome C3. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 134 AA; 15145 MW; F18021158A3A7104 CRC64; MANPHEPHFL KPLLPGFHSG ITIPLGFFSK HIERKTNQKT WKLRSDASDK IWEVIQEGMR LTGGWKDFAT AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EIQYTDPDIN KEEADAGDAD DNEITHIASS SRMI // ID A0A0D3B607_BRAOL Unreviewed; 203 AA. AC A0A0D3B607; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g034820.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g034820.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g034820.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g034820.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g034820.1; Bo3g034820.1; Bo3g034820. DR Gramene; Bo3g034820.1; Bo3g034820.1; Bo3g034820. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 180 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 180 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 203 AA; 22792 MW; 3E4318855DD875FE CRC64; MANPHEPHFL KPLLPPEGDM VFHVTPFGPS CCEIQYTHPH IIKEEAEADD AADDAAGDAD DNEHHHKIRG TWAMSSFSFD YCFLAEVTAS NLKEDKLYLP VGATSSTALN KQCQEMILVN KKGKSWTVSL RFSELGGMYY IRRSWRKFCL DNRCDIGDLF VFNLVGDGKT TPLMCVCPER KECSELLSKH LSRKSGESSP LTC // ID A0A0D3B6X9_BRAOL Unreviewed; 176 AA. AC A0A0D3B6X9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g039030.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g039030.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g039030.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g039030.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g039030.1; Bo3g039030.1; Bo3g039030. DR Gramene; Bo3g039030.1; Bo3g039030.1; Bo3g039030. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 176 AA; 20229 MW; 7A61949E4E3A2C45 CRC64; MIRASATEKN KIPDEERRVL SLRSEGESRA DRRLFPRRTT AICLRRLNKM ANPHEPHFFK PLLPGFQSGV TIPLAFFSKH IEGKTNQKTW KLRSDASDQT WEVIQEDRTL TRGWKDFTTA HDLQIGDLVI FKHEGDMVFH VTPFGPSCCE IQYTHPHIIK EEADAGDADD NEISKS // ID A0A0D3B709_BRAOL Unreviewed; 563 AA. AC A0A0D3B709; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g039330.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g039330.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g039330.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013621962.1; XM_013766508.1. DR EnsemblPlants; Bo3g039330.1; Bo3g039330.1; Bo3g039330. DR GeneID; 106328133; -. DR Gramene; Bo3g039330.1; Bo3g039330.1; Bo3g039330. DR OMA; HEANPSL; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 452 544 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 563 AA; 63230 MW; 2B90F19316A48772 CRC64; MANVEDDHLY MELWKACAGP LVEVPRYGER VFYFPQGHME QLVASTNQEG VVDQEIPDFN LPSKLLCRVL SVLLKAEHET DEVYAQITLQ PEEDQNEPES LDPPVTEAAK QSVDSFVKIL TASDTSTHGG FSVLRKHATE CLPLLDMTQP TPTQELVARD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGKTGDL RVGVRRLARQ QSTMPASVIS SQSMNLGVLA TASHAVNTKT MFVVFYKPRI SQFIIGVNKY MSAMKSGFST GRRFRMRFEG EESPERVFTG AIIGSGDISP QWQASKWRLL QWDEPSLVQR PNRVSPWEIE PFSPSKLTID SSVSEITGSP VASNFLSSFP QSHEANPSLK LLFQDPPSGL QCKKTETSVT SCCRLFGFDL MSKPTTTPSP LGKQVISMDS NNSASTKCQD LNSHQKQQTS TRSRIKVQMQ GTAVGRAVDL TLLRSYDELL SELEKLFEIE GELRPKDKWA IVFTDNEGYM MLAGDDPWNE FCKMAKKLFI YSSDEVKKMS SKSSLDDEGT IINLEPDQRI ANL // ID A0A0D3B718_BRAOL Unreviewed; 316 AA. AC A0A0D3B718; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g039420.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g039420.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g039420.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g039420.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013623371.1; XM_013767917.1. DR EnsemblPlants; Bo3g039420.1; Bo3g039420.1; Bo3g039420. DR GeneID; 106329281; -. DR Gramene; Bo3g039420.1; Bo3g039420.1; Bo3g039420. DR OMA; YNLYNHQ; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 35739 MW; 9D40750EFDB19D68 CRC64; MMTNLSLARE GEGEEEEEEE EEEAEAKKPT EEVEREHMFD KVVTPSDVGK LNRLVIPKQH AERYFPLDSS SNEKGLLLNF EDLTGKLWRF RYSYWNSSQS YVMTKGWSRF VKDKKLDAGD IVSFLRCVGD TERDSRLFID WRRRPKVPDY PTSTSHFPAG AMFPRFYSFP TATTSTSYNL YNHQQPRHHH SGYCYPQIPR EFGYGYVVRS VDQRAVVADP LVIESVPVMM HGGARMNQAA VGTAGKRLRL FGVDMECGES GVTNSTEEES SSSGGSLPRG GASPSSSMFQ LRLGNSSEDD HLFKKGKSSL PFNLDQ // ID A0A0D3B7H0_BRAOL Unreviewed; 403 AA. AC A0A0D3B7H0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g041930.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g041930.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g041930.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g041930.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g041930.1; Bo3g041930.1; Bo3g041930. DR Gramene; Bo3g041930.1; Bo3g041930.1; Bo3g041930. DR OMA; NTEEMIN; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 281 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 281 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 403 AA; 45194 MW; 0EFCAF145D67ED4F CRC64; MHTNIRSLRG YISRKKHPIT EEVDDGQDNT GNKKVKKNNS EAEADSSSSD SSCFVAPVTA SNLEEDSLCL PPDFTISNGF KRKCRKIVLT DERERSWALD LRFNKSSDTF CITRGWRNFC EENGRKEGSL FKFKLIMRNG ETPLLSVCPT ESISDGPQGV DENIPQICRD STLPNPNRFV TLTLTNDSLK SSRLYLPLPF LKENGMDKPG MVTLLGKDGT RMLANLLREN SGRMSLGKGL KDFARANGLN MGESFTLELI WENATPVLSL LSTEFRSQNR FVTLTLTQDS FKNSRLGLPL PFMRENGMNE PGTIALLGKD GTKWMTNLLR ESQGRMSLGK GWKDFARANG LEIGESFTLE SIWEDATPML SLSSRESKRE KVYVSTEPSI GNETKKDENN IED // ID A0A0D3B7J3_BRAOL Unreviewed; 1096 AA. AC A0A0D3B7J3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g042160.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g042160.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g042160.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g042160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g042160.1; Bo3g042160.1; Bo3g042160. DR Gramene; Bo3g042160.1; Bo3g042160.1; Bo3g042160. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 278 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 675 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 739 834 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 882 977 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 278 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 580 675 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 739 834 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 882 977 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1096 AA; 122663 MW; D34E7599AD1524AE CRC64; MMFQVSDVGH RDVETPSSNN GQDSIGSMNK KHPYARPEAG FSSNHGDNQD NDELPRKRNY PETEKGSSSR HSCIVADATT ASSLHTYTPV FLTQDFTSLG GLKGKCSPKR IISSMGTRFV TFTLAPVDVR HCRLRLPMQF SRENGINKPG KIYLLGNDGS KWLANLLQES RGRMTVGDGW KSFVKANGLK IGESYTLELN WEDTTPVLSL CPTDHHSVGI RADGECSEAS ENESLPIKPS NGTEVIKYDN RKDESSSWER EKNHLRSRDS SSASQNRFLT LTITPDSLRH GRLRLPLEFM TENSMNRPGD ITLLGKDGAK WLASLLLERR GRMCLGKGWK DFAKANGLKT GDSITLESIW EDSTPVLRLL HIESTDDRRQ QGECSKAREK ESAFTEPSSG NKTRKLESNR EESRIYPLTR LDSSLVNQNR FETSTVSPEI VRYGAHDYQI GEIVVFRDER DMMFQVSDLG PRFSEIQNVL SPSSNSDQEN IGSISIVRKE TGFSLYDGDD QYNIELPRKK KAKKNNPGTE ADSSPERSCF VAHVTASNLH TDAPHLPQDF TSSNSRTQIV SSYLSSEKQL ATFTLAPVDV RNCRLRLPMQ FTRENGINKP GKIYLLGKDG SKWLANLLLE SRGRMTLGDG WKSFVKANGL KTGESFTLKL NWEDATPVLS LCPPECSIDS REGGECSETI EKEPLPIVLS CEKEISKDDE NRKKESSSWE RETNLLIWRD STVLSQNRCL TLTITPDSLK HGRLRLPLEF MTDNSMNKPG EITLLGKDGV KWLVSLLLEK RGRMSLGKGW KDFAKANGLK TGDSITLESI WENATPVLSL LRVESSNDIE VSKQSGSSSG NKTRKAENRR EGSSSWELEK RRYSSSAFQN RIVILTLTPE GVRDCKLQLP SQFMRTNGIM NPGKITLLGR SGMKWFAYLL SKDGTIALEN GWKGFCEANG VMVGESFVLE LIPTQDADQV FKFYSNYGYH IHKCSFLAMS FNLLHLMSHM RFTKFLIEAN AETADTQGHA TDFVARFFSH AGLMSFISAV PESQSLTIPS DFFSNYIKDL ETTTAELKSD SSLDITWKVG RILNDGWGDF AVASLP // ID A0A0D3BAN0_BRAOL Unreviewed; 293 AA. AC A0A0D3BAN0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g063920.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g063920.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g063920.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g063920.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g063920.1; Bo3g063920.1; Bo3g063920. DR Gramene; Bo3g063920.1; Bo3g063920.1; Bo3g063920. DR OMA; YSKHIEG; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 222 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 222 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33483 MW; 95D8B72EC88EB17B CRC64; MANVSASSPI NPHFLQPLLP GFHSHINIPI AFYSKHIEGT TNDSNANATV KLRSDASDVT WEVKMDGRRL TQGWEKFATG HAFKVGDIVI FRHDGDLLFH VTPNSDSEKY QQQHTRETRY SSDNSCLVAR VTESNLINDA LIILMNEDGK PWTLFLKYYD TSGHVYIRRG WRSFYQANRK RAKDVLTFKL VKTGTKPVLQ LRAYSVYNRR SSSSSSISQD RFVTLTLRPY NLKNSKLCLP VLFVKANGIK NAREITLIDR YGVKRTTSLK PDDKYGRVRL GKECIKFCEV KSL // ID A0A0D3BAN3_BRAOL Unreviewed; 346 AA. AC A0A0D3BAN3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g063950.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g063950.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g063950.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g063950.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013624170.1; XM_013768716.1. DR EnsemblPlants; Bo3g063950.1; Bo3g063950.1; Bo3g063950. DR GeneID; 106330195; -. DR Gramene; Bo3g063950.1; Bo3g063950.1; Bo3g063950. DR OMA; VMANGIK; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 39569 MW; E018217E423E6CB0 CRC64; MANGSASSAI NPHFFQPLLP GFHSHINIPV AFYSKHIKGT TNEVVKLRSD ASDLTWEVKM DGRRLTHGWE KFATGHAFKV GDIVIFRHDG DLLFHVTPFG PSCCEIQYND DDDEKYHQQH TREAGSSSDN SCFVARVTES NLKKDALFLP QHFSRSNGFV NRESEIILLN EDGELWTLLM KYYKTSGHVY IRRGWISFCQ ANRKRANDVL TFKLVQTGRK PVLQLRASVY NNRASTSFSS TSQDRFVTLT LKQYHLKSCK LSLPVAFVMA NGIKNVRKII LVDRYGVRRT TSLKPDDKYG RMRMDKECIK FCEANGVKVG ESFRLELIKE KEEDTATHLL KFCSKV // ID A0A0D3BAS0_BRAOL Unreviewed; 236 AA. AC A0A0D3BAS0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g064320.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g064320.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g064320.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g064320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013622680.1; XM_013767226.1. DR EnsemblPlants; Bo3g064320.1; Bo3g064320.1; Bo3g064320. DR GeneID; 106328731; -. DR Gramene; Bo3g064320.1; Bo3g064320.1; Bo3g064320. DR OMA; VNLECHG; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 26845 MW; BAE42A7408DBFC08 CRC64; MLGNHYSRDI HHNTLSLHSH QNDTASHKES LFEKSLTPSD VGKLNRLVIP KQHAEKYLPL NNGGGELTSE TTEKGMLLSF EDESGKSWKF RYSYWNSSQS YVLTKGWSKY VKDKHLDAGD VVFFQRHRFD FHRLFIGWRR RGEASSLSAV SQEARVNTTV YWSGLTTPYR QVQASTSSYP NIHQEYSQYG AVAETPTVVA GSSRTVRLFG VNLECHGDVV ETPPCSDGYN GQHIYY // ID A0A0D3BBP8_BRAOL Unreviewed; 285 AA. AC A0A0D3BBP8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g068590.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g068590.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g068590.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g068590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013626721.1; XM_013771267.1. DR EnsemblPlants; Bo3g068590.1; Bo3g068590.1; Bo3g068590. DR GeneID; 106332770; -. DR Gramene; Bo3g068590.1; Bo3g068590.1; Bo3g068590. DR OMA; RGWIKLA; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32832 MW; BED511816F06EDFC CRC64; MEWNRGFGRV KEERKSSSFF KIFHSADLSS ESMRGIPYDF MKNVSKEDFS CKMVIRTKWG RSWEVDISMN PRFYYMEKSG WNQFVSDNAL GSNEFVTFTH SGLMCFNVNI YRESGKEIVL PHATTPFSGI KNEEGERSYK DVKKEDESMG GVGHVEIGES SRGAALRKKK AEKHKRRKKV KYGVPRFKIT ITKSYLKSLP IPTFFDKYLK SESKVYKIHH SEGDGSWEVL SLVHQAHIVL SRGWIKLARE YPLAVGDRCT FHLVKPTEFV LTSKKAKAIE ISISD // ID A0A0D3BBP9_BRAOL Unreviewed; 327 AA. AC A0A0D3BBP9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g068600.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g068600.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g068600.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g068600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g068600.1; Bo3g068600.1; Bo3g068600. DR Gramene; Bo3g068600.1; Bo3g068600.1; Bo3g068600. DR OMA; FITFTHR; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 226 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 226 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 38045 MW; BD9670C71C4E4130 CRC64; MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT PRKPHTTTPF SKLLRLILHE TNEIVMKNQL VTLMIQTGGI KKEEDVKKED ESMGVGVEIE VQKKKRAVEV GESSRGAALK KKKAEKPKPS NKKKKKMKRK KVKNGVPEFE ITITNSYLKF LAIPKKFEEA YIPDESKVYM IHHSEGKGSW EVFCLVRQTR TIFSSGWCRL AREYPLSVGD RCTFHLVKPD EFVLTTKKAR EEITVIE // ID A0A0D3BBX3_BRAOL Unreviewed; 267 AA. AC A0A0D3BBX3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g071320.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g071320.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g071320.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g071320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g071320.1; Bo3g071320.1; Bo3g071320. DR Gramene; Bo3g071320.1; Bo3g071320.1; Bo3g071320. DR OMA; ERRMQEC; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30678 MW; 0AF53D086200DDB7 CRC64; MLPERRMQEC LSKSSFSKSL SPGQHWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW QLWLRPDKKG LFMIKEDWDE FADDNFLGPD DTLVFTHQDT MYFQVHIFKK DGKEIISAPL EVEPQKETTS ASASGNTIQI ETAIGRTATR GRKSCANLQN PERYLLNPQN PYFAKTLKKT NHLLHVGLPV IRQYGLEFGP HDSSMYFILP DGNKVDGLTK YYNGLPSFLG WADVCQQYNL KIGDTVVCEF ELSGRVVAAV RVHFVNE // ID A0A0D3BC30_BRAOL Unreviewed; 329 AA. AC A0A0D3BC30; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g071890.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g071890.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g071890.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g071890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013622602.1; XM_013767148.1. DR EnsemblPlants; Bo3g071890.1; Bo3g071890.1; Bo3g071890. DR GeneID; 106328662; -. DR Gramene; Bo3g071890.1; Bo3g071890.1; Bo3g071890. DR OMA; PHSEINY; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 38183 MW; 68D4ECDCA33309A8 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVRRF KDELSVAVAL TVPDGHVWRV GLRKADNNNK IWFQDGWQEF VDRYSIRIGY LLVFRYEGNS AFSVYIYNLP HSEINYHSTG LMDSASQNNH FKRPRLFEDL EDEDAETLHT TTPAIQSFFT GPVKPEEATP TQTSKVPKKR GRKKKNADHP EEVNSSAPRD DDPESRSKFY ESASARKRTV NAEERERAIN AAKTFEPTNP FFRVVLRPSY LYRGCIMYLP SGFAEKYLSG ISGFIKVQLG EKQWPVRCLY KAGRAKFSQG WYEFTVENNL GEGDVCAFEL LRTRDFVLKV TAFRVNEYV // ID A0A0D3BD64_BRAOL Unreviewed; 707 AA. AC A0A0D3BD64; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g083650.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g083650.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g083650.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g083650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013627290.1; XM_013771836.1. DR EnsemblPlants; Bo3g083650.1; Bo3g083650.1; Bo3g083650. DR GeneID; 106333383; -. DR Gramene; Bo3g083650.1; Bo3g083650.1; Bo3g083650. DR OMA; EIWLDDH; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 560 662 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 560 662 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 707 AA; 78023 MW; BCAD37C5169D1287 CRC64; MKTLHVAAKG GDLAEGCGIL AGDADETILM DGMGDVGREI WLDDHGHGHR EEDDIIVHHD PSMFYGDLPT LPDFPCMSSS SSSSTSPAPV NAIVSSASSS SAASSSTSSA ASWAILKSDG EDPTTQNQNQ YASGNCDVES SAALQSTASM EIQLDNTQGF GCGEGGGDCI DMMETFGYMD LLDSNEFFDT SAIFNQDEDT QNPNLMDQTL ERQDQIVVPM LENNNNNSGG DMQVMNHSLE QEDDLAAVFL EWLKNNKETV SADDLRKVKI KKATIESAAK RLGGGKEAMK QLLKLILEWV QTNHLQRRRT NNNNLSYQQD PFQNPNLIPP SDQTCFSPST WVPPPPQPPP PQQPAFVSDP GYGYMPAPNY PPQEYLPLLE SPPTWPPPQS GPMPLQQFTM PNPQYTPFQD PGGGFTGYNM NPYQYPYLPS SGQMRDQGLL RLCSSATKEA RKKRMARQRR FLSHHHRHNN NQQNQTQIGE VCGAVDPQLN HVPTTATGGT WMYWPNVPAM PPPVSSQLPA METQLPTMDR AGSSSVMPRQ QVVPDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISLAME DIGTSRVWNL RYRFWPNNKS RMYLLENTGD FVKTNGLQEG DFIVIYSDVK CGKYLIRGVK VRQPAGQKPE ASSSAAVTKR QSKSQRSINN NSPSANIVAS PPSQAVK // ID A0A0D3BE61_BRAOL Unreviewed; 119 AA. AC A0A0D3BE61; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g092070.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g092070.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g092070.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g092070.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013628005.1; XM_013772551.1. DR EnsemblPlants; Bo3g092070.1; Bo3g092070.1; Bo3g092070. DR GeneID; 106334247; -. DR Gramene; Bo3g092070.1; Bo3g092070.1; Bo3g092070. DR OMA; TKFIFSM; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13626 MW; FB05C0863B694687 CRC64; MDPDMMTKRV LTDTDLSTQG WLILPTQKIE NIEKNLGFTL PRNGAQVEIL DNDKSYWVNL NKNKAGYYIG QGWKSLRDER DLKTGDVIQL YWKDTKFIFS MCPSEAEQAS QKGESSSSN // ID A0A0D3BFX7_BRAOL Unreviewed; 848 AA. AC A0A0D3BFX7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g108130.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g108130.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g108130.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013628677.1; XM_013773223.1. DR EnsemblPlants; Bo3g108130.1; Bo3g108130.1; Bo3g108130. DR GeneID; 106334844; -. DR Gramene; Bo3g108130.1; Bo3g108130.1; Bo3g108130. DR OMA; SDGRMQM; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 722 806 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 848 AA; 94490 MW; E9414BC6F5E563EA CRC64; MASSEVSMKG NRGRGENFSS AGYSDPTVAG EAQKIQSNRS VAAERVVDPE AALYRELWHA CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEA DTDEVYAQIT LLPEPVQDEN AIEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHASEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK PRTSPSEFIV PFDQYTESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK SKWRSLKVRW DETTSIPRPD RVSPWKIEPA LSPPALSPVP MPRPKRPRSN LASSTPDSSM RIREGSSKAN MDPLPASGLS RVLQGQEYPT LRTKHVESVE CDAPENSVVW QSSTDDDKVD VVSASRRYEN WISSGRHGPT CTDLLSGFGT NIEPPHGHQI PFYDRLSSSP SVAARKILSD QDGKFEYLAN QWMMHSGLSL KLHESPKVPA ASDASFQGIG NPNYGEYALP RAVTTENAAG NWPIRPRALN YFEEAVHAQA REHVTKRPAV IQEEAAKPRD GNCRLFGIPL VNNVNGTDTT LSQRNNLNDP AGPTQMASPK VQDLSDQSKG SKSTNDHREQ GRPFPVSKPH PKDVQTKTNS CRSCTKVQKQ GIALGRSVDL SKFQNYEELV TELDRLFEFN GELMAPKKDW LIVYTDDEND MMLVGDDPWQ EFCCMVRKIF IYTKEEVRKM NPGTLCCRNE EEPVVGEGSD AKDAKSASNP SLSSAGNS // ID A0A0D3BI27_BRAOL Unreviewed; 261 AA. AC A0A0D3BI27; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g138400.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g138400.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g138400.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g138400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g138400.1; Bo3g138400.1; Bo3g138400. DR Gramene; Bo3g138400.1; Bo3g138400.1; Bo3g138400. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR006912; Harbinger_derived_prot. DR Pfam; PF02362; B3; 1. DR Pfam; PF04827; Plant_tran; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 174 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 29673 MW; 3B94DE6BAF65AC62 CRC64; MQPEGLVFLH YKNVRQQFVC LLKVLRLTRL TNITAPSCLH NFTNGIIQLF GNDYLRRPTP EDLQRLLDIG EKRGFPGMDG SIDCMHWEWK NCPTAWKGQY ARGSGKPTIV LEAVASQDLW IWHTFFGPPG TLNDINVLDR SPVFDDIFEG RAPRYLPVGA TSSTPLHKQC QETILVNKEG NLWNVSLRFS ESGGKYYITR GWRKFCLDNR CEIGDLFVFN VVGDEKTTPL MCVCTERKEC SEILSKYLSR KSGESSLGGD L // ID A0A0D3BI42_BRAOL Unreviewed; 352 AA. AC A0A0D3BI42; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g138550.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g138550.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g138550.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g138550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013622296.1; XM_013766842.1. DR EnsemblPlants; Bo3g138550.1; Bo3g138550.1; Bo3g138550. DR GeneID; 106328407; -. DR Gramene; Bo3g138550.1; Bo3g138550.1; Bo3g138550. DR OMA; CIDDNTS; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 185 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 185 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 39507 MW; 3948DAB753FEEF00 CRC64; MDYSCIDDNT SNTSETLSMS KKTPPQATMR LYRMGSGGSS VVLDLENGVE TESSRKLPSS KFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAAASYD IAARRFRGRD AVTNFKSPSS DAESAFLEAH SKAEIVDMLR KHTYADELRQ SERKFLDGDG NGKKRRESKT TVTDENDGVL REVLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLPVSVTPS PTKGVLINLE DRTGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLRAGDV VCFERSSGPD QQLYIDWKVR SGIEKTTSVQ TVVRLFGVNI FNATTNANTN DAVGESSSKK RSREVDLFAL GCSKKQAIIN VL // ID A0A0D3BJ39_BRAOL Unreviewed; 849 AA. AC A0A0D3BJ39; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g148950.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g148950.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g148950.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013629482.1; XM_013774028.1. DR EnsemblPlants; Bo3g148950.1; Bo3g148950.1; Bo3g148950. DR GeneID; 106335498; -. DR Gramene; Bo3g148950.1; Bo3g148950.1; Bo3g148950. DR OMA; FNPHPHE; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 710 794 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 849 AA; 93716 MW; FCC861C693E9DB39 CRC64; MRLSSAGFNP HPHEVTGEKR VLNSELWHAC AGPLVSLPPL GSRVVYFPQG HSEQVAASTN KEVDAHTPNY PSLQPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNGQEQK YPYLAAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA HRPQTVMPSS VLSSDSMHLG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP SVLPSFHGLK EDDMGMGMGM SSPLMWDRGL QPMNFQGMGV NPWMQPRPLD ASGLLGMQND AYQAMAAAAL QDMRGIDPAK AAASLLQFQN PSGFSVQPPS LVQPQMLQQQ LTQQHQQQLS QQQVVDNHNL SASSAAMSQS NTSLLQSMTP LCHQQSFSDT NGGNNPITQL HTLLSNFPQD ESSQLLNLTR TNSAMTSSGW PSKRPAIDSS FQHSTAVNNN QSVMEQLGQS HTSNVSPNAV SLPPFPSGQE ENPSDPHSHL LFGVNIDSSS LLIPNGMSNL RSIGIEGGDS TTLPFTSSTF NNEFSGTMTT PSSCIEEPGF LQPSENQQSN TFVKVHKSGS FGRSLDITKF SSYNELRSEL ARMFGLEGQL EDPVRSGWQL VFVDRENDVL LLGDDPWPEF VSSVWCIKIL SPQEVQQMGK RGLELLNSAP SSNNVDKVPS NGNCDDLGNR SDPRSLGNGI ASVGGSFNY // ID A0A0D3BLY2_BRAOL Unreviewed; 871 AA. AC A0A0D3BLY2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g173740.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g173740.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g173740.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g173740.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g173740.1; Bo3g173740.1; Bo3g173740. DR Gramene; Bo3g173740.1; Bo3g173740.1; Bo3g173740. DR OMA; FFCEAND; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR CDD; cd07982; TAF10; 1. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR003923; TFIID_30kDa. DR Pfam; PF02362; B3; 6. DR Pfam; PF03540; TFIID_30kDa; 1. DR PRINTS; PR01443; TFIID30KDSUB. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 295 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 526 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 528 603 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 646 740 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 750 846 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 151 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 295 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 526 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 528 603 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 646 740 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 750 846 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 871 AA; 99246 MW; 3204BFAE2430D282 CRC64; MNHGQQSGEA KHEDDAVLTE FLGSLMDYTP TIPDDLVEHY LAKSGFQCPD VRLIRLVAVA TQKFVADVAS DALQHCKARP APVVKDKKQQ KDKRLILTME DLSKALREVS ASSGGFDPHL SIEKVSNNSL QFLFLFELFE MVNPPLQSPT NPHFFQPLLP GFHSHLTIPV VFFSKHIHGK TKKKTVKLRS DASDKTWEVK IDGRRLTRGW KDFTTAHDLR IGDIIIFKHE GDMVFNVTPF GPSCCEIQYT QSHIIKEEAD TDDDDDEDDN ERRYKIRNGL KPKTEPMSSF SFHHCFVSEV TTSNLKLDTL YLPVGATSSN ALNKRCHEMI LVNKEGNSWT ASLKFRESGG MYYIRRGWRR FCLDNRRKVG DLFVFNLVGD GKTTPMMCVC PEEECSELMS KHLSRGRRSR KTKKRSKWVA SSSSRRNRFL TITLTRYNFI SSKLILPIAF TNTNGLSNYK EIILMDKHGV KRLTKLVQDG PHNNRKGLGK GWKFFCEAND VFKIGESFVL ELVWEDTVPV LKFCSKNIPV AFFSKHVQGR HGDKTARLRS DASDTTWEVV ITGRRLTGGW KEFVKAHDLR VGDVLVFRHE GELVFHVTAL GSSCCEVEYT TLDDGDDNKE TVLPSDIKPM KKRAKKNPRK KDFCSCFVAN VTVSSLHEDK VYIPVSFVRP NGLSNTYCKI VLLNEMGRSW KLSLVHDKSG SYLRQGWRSF CSANAINGGR YTFKLVQNSE TPVIRLYQAE HRHEDNTHSY LVGTLTPSSL RNDTLYLSRR FVNSNGLKEK CCEMILKNDN GGTWCLVLRR NETNETTVIS RGWRSFCHAN GLKVRDPFRF KLAGTREKPV LQFCPSESNR NTRHVDCSEE ASTMASTKQG R // ID A0A0D3BLY4_BRAOL Unreviewed; 986 AA. AC A0A0D3BLY4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 19. DE RecName: Full=Glutamate receptor {ECO:0000256|PIRNR:PIRNR037090}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g173760.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g173760.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g173760.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Glutamate-gated receptor that probably acts as non- CC selective cation channel. {ECO:0000256|PIRNR:PIRNR037090}. CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|PIRNR:PIRNR037090}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the glutamate-gated ion channel CC (TC 1.A.10.1) family. {ECO:0000256|PIRNR:PIRNR037090, CC ECO:0000256|SAAS:SAAS00586618}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo3g173760.1; Bo3g173760.1; Bo3g173760. DR Gramene; Bo3g173760.1; Bo3g173760.1; Bo3g173760. DR OMA; GRTIGFW; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004970; F:ionotropic glutamate receptor activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR001828; ANF_lig-bd_rcpt. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001320; Iontro_rcpt. DR InterPro; IPR017103; Iontropic_Glu_rcpt_pln. DR InterPro; IPR028082; Peripla_BP_I. DR InterPro; IPR001638; Solute-binding_3/MltF_N. DR Pfam; PF01094; ANF_receptor; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00060; Lig_chan; 1. DR Pfam; PF00497; SBP_bac_3; 1. DR PIRSF; PIRSF037090; Iontro_Glu-like_rcpt_pln; 2. DR SMART; SM01019; B3; 1. DR SMART; SM00079; PBPe; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53822; SSF53822; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Ion channel {ECO:0000256|PIRNR:PIRNR037090, KW ECO:0000256|SAAS:SAAS00586652}; KW Ion transport {ECO:0000256|PIRNR:PIRNR037090, KW ECO:0000256|SAAS:SAAS00586652}; KW Ligand-gated ion channel {ECO:0000256|PIRNR:PIRNR037090, KW ECO:0000256|SAAS:SAAS00586652}; KW Membrane {ECO:0000256|SAAS:SAAS00425515, ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Receptor {ECO:0000256|PIRNR:PIRNR037090, KW ECO:0000256|SAAS:SAAS00586650}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAAS:SAAS00425515, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00425515, KW ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|PIRNR:PIRNR037090, KW ECO:0000256|SAAS:SAAS00586652}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 986 Glutamate receptor. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5002273160. FT TRANSMEM 569 591 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 629 649 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 850 873 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 885 982 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 885 982 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 986 AA; 111191 MW; D8FA9776B86C7158 CRC64; MMRGNNFVLI LLFFFRMQVR EAQNTDVKVG IVTDVGRENS DITLLCISMS LSDFYSSHPE TRTRLITTIV DSKNDVVLSA AAALDLITNK EVKAILGPWT WMQAQFMIEM GQKSQVPTVS YSATSPFLAS IRSQYFFGAT YDDSSQVHAI KAIIELFMWR EVAPAYVDNT FGEGILPSLT NALQEINVRI PYRTVIYPNA TDDEISVELL RMMNLPTRVF VVHIAKLLGS RFFAKAKEIG MMKQGYVWIL TNSIADDLSI MNETEIETME GVLGVKTYFP RSEELETFKS RWKKRFPNSD LSVYGLCAYD ATTALALAIE EAGTSNLTFV KTDAMRDMSE LQGLGVSQYG PKLVQALSRV RFKALAGDFQ FINGQLHPSV FEIVNVDGRG GRTIGFWKKE HGLLKNLEQK PATTTTSSTW QDRLRPIIWP GDTMSVPKGW EIPTNGKRLR IGVPTNNGFK QFVKATRDPI TNSTIFSGFC IDYFEAVIQA MSYDVSYDFI PFEDVNYDTA IYQVYLGLEY DAMVADTTMS ANRSMYVDFS LPYTPSGIGV VVPVEESVKR SSIIFLTPLT LELWVISLLS FFIIGLVVWV LEHRVNPDFD GSVKYQISTI FWFSFSIIAF APRERVLSFW ARLVVIIWYF LVLVLTQSYT ASLSSLLTSQ QLDSTITSMN SLLAKGEPLV AIVLQQSSLG CLVNPTVRTR SGEHDRDIPL RRVSFPNRRL QESGFSDANL VTYGSAENCD DLLSKGPQKG GISAAFMEVP YVKLFLGQYC NKYKMVETPF KFNGLGFVFP IGSPLVADVS RAILQVQESN KVTQLKNAWF KKIDESCPDP FTNPDPHSSV SFRQLGIDSL WVLFLAAAIV CAIALGNFVF RFLKENPNQR NLRELWERFL QPDRNSYINE RLPLRFTRVN GINKAGKKIT LMGQDGVNWM VLLTNENERG RMRLGRGWKG FCEAHGVKIG DSFVLELMRE KDSSHVLKFC TKLNCV // ID A0A0D3BLY8_BRAOL Unreviewed; 493 AA. AC A0A0D3BLY8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g173800.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g173800.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g173800.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g173800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013622020.1; XM_013766566.1. DR EnsemblPlants; Bo3g173800.1; Bo3g173800.1; Bo3g173800. DR GeneID; 106328181; -. DR Gramene; Bo3g173800.1; Bo3g173800.1; Bo3g173800. DR OMA; CETPIVE; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 147 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 386 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 147 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 386 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 493 AA; 55670 MW; 2C36C76EC366415F CRC64; MTIPPKFSLF HRRFITGDKP VLTVDDEFLK KHTKVLLISD SSEKIWKVKL DGSRLAGGGW EEFAKAHSFI DGDVLVFRHD GNEIFHVAVS PRSDSWDIRH HTSPSLVDTD DAVSDDESDD EEEESDDDAG DISVNKKKNK EAGFSCFLRA RVTPYSLIKD RLDLSKDFTV VSFNEHNKPC EIDLVNEKGR KWTLCLSKNS TSGVFYIRRG WVNFCSANGI SQGDICKFKL SENGERPVLR LCPSSNSHEE EEECPEVDAV KTSSVGGCSK EKRKGKGKKQ NTPSQFLTVK LTPSRLQTGQ LYISSVFVNE SGIKKSGEIT LMNQDGRKWP SYLQMTGQCG SEWFYLRHGW REMCKTNGVK VNDSFVLELV WEDDDAVLKF CSKVENKGNG SGRPRKKRVC ETPIVETEKR KRGRPRVSNT NSSNLRRTQQ ESLSVSDQVA NVKLSILDTL NTVRQFRADI EAREKNLEAS SLEVDALGER ILGINQILNN YLL // ID A0A0D3BMK1_BRAOL Unreviewed; 339 AA. AC A0A0D3BMK1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo3g179890.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g179890.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo3g179890.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo3g179890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013624963.1; XM_013769509.1. DR EnsemblPlants; Bo3g179890.1; Bo3g179890.1; Bo3g179890. DR GeneID; 106331185; -. DR Gramene; Bo3g179890.1; Bo3g179890.1; Bo3g179890. DR OMA; GEVNQES; -. DR Proteomes; UP000032141; Chromosome C3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39204 MW; 2945409A0BFE473E CRC64; MVILHEISNE AKTTTETSGS INSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW GAQIYAEHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG KLNRLVIPKK YAVKHLPFIS DDQEEGEAVD DVEVVFYDST MRQWKFRYCY WRSSQSFVFT RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH NKSEGEMKTE NFFNSKLEDE ETKQEENKGG FMLFGVRIQ // ID A0A0D3BNP9_BRAOL Unreviewed; 297 AA. AC A0A0D3BNP9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g006900.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g006900.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g006900.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g006900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013631858.1; XM_013776404.1. DR EnsemblPlants; Bo4g006900.1; Bo4g006900.1; Bo4g006900. DR GeneID; 106337311; -. DR Gramene; Bo4g006900.1; Bo4g006900.1; Bo4g006900. DR OMA; HQVVEKE; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 3 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 297 AA; 33882 MW; 4C9D696DB14AC1E6 CRC64; MMMTNLSLTR EGEEEEEEEQ EEAKKPMEEV EREHMFDKVV TPSDVGKLNR LVIPKQYAER YFPLDSSTNE KGLLLNFEDL TGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRCVGDSGR DSRLFIDWRR RLKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP RHHHHSGYNY PQIPREFGYG YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ // ID A0A0D3BNS5_BRAOL Unreviewed; 583 AA. AC A0A0D3BNS5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g008150.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g008150.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g008150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013633548.1; XM_013778094.1. DR EnsemblPlants; Bo4g008150.1; Bo4g008150.1; Bo4g008150. DR GeneID; 106339304; -. DR Gramene; Bo4g008150.1; Bo4g008150.1; Bo4g008150. DR OMA; ISVNKYM; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 472 564 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 583 AA; 65668 MW; D10143F1C07EE71A CRC64; MESVVDDQLY MELWKACAGP LVEVPRYDER VFYFPQGHME QLVASTNQRV VDKDIPVFNL PPKILCRVLN VMLKAEHETD EVYAQITLQP EEDQSEPTSL DPPVTEPAKQ TVDSFVKILT ASDTSTHGGF SVLRKHATEC LPSLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGHQTGDL RVGVRRLAKQ QSTMPASVIS SQSMHLGVLA TASHAFNTTT MFVVLYKPRI SQFIISVNKY MAAMKKGFGI GMRFRMRFEG EESPERIFTG TIVGTGDLSP QWPSSKWRFL QIQWDEPSTV QRPNKVSPWE IEPFLPSTLT TSPTQPHSKS KRSRPIDSSV SEITGSPGAS NFLSRFPKSH EPSPSLKLLF QDPSSERNSN KTEAPATSCC RLFGFDLKSK PASAPNPPDK QLISVDSNNS GSTKCQDPNS SKDQKRQTSS TRSRTKVQMQ GTAVGRAVDL TLLRSYDELI SELEKMFEIE GELRSKDKWA IVFTDDEGDM MLVGDDPWDE FCKMAKKLFI YSSDEVKKMS SKSLLDDECT MVQLEPDQRT VKL // ID A0A0D3BRN8_BRAOL Unreviewed; 248 AA. AC A0A0D3BRN8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g035110.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g035110.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g035110.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g035110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013634346.1; XM_013778892.1. DR EnsemblPlants; Bo4g035110.1; Bo4g035110.1; Bo4g035110. DR GeneID; 106340023; -. DR Gramene; Bo4g035110.1; Bo4g035110.1; Bo4g035110. DR OMA; LCPTSHD; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28628 MW; 33F40F2F7B02E17B CRC64; MSINKYSSDF NYHSLMWQQQ QHPHHHHQNN VVEEKEALFE KPLTPSDVGK LNRLVIPKQH AERYFPLAAA AADAMEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKQLD AGDVILFHRH RVDGGRFFIG WRRRGNSSSS SDSYRHLQSD ASLQYYPHAG AQAVESQRGN SKTLRLFGVN MECQLDSDLS DPSTPDGSTL CPTSHDQFHL YPQQHYPPPY YMDISFTGDV PQTRSPQG // ID A0A0D3BS34_BRAOL Unreviewed; 548 AA. AC A0A0D3BS34; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g039540.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g039540.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g039540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g039540.1; Bo4g039540.1; Bo4g039540. DR Gramene; Bo4g039540.1; Bo4g039540.1; Bo4g039540. DR OMA; VNADNKF; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 441 519 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 107 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 548 AA; 62466 MW; 2B0003039BFC2280 CRC64; MISYRGFNEA FLQCDVPMWP DSCDDVDCGS IGPLPIHLVT SMNDELCQLK PIFDIPSKIC CNVFSIKLKV ETTTDEIYAE ISLLPDTSEV EIPTPRHENN IQNINYFTKV LSASDTNKKG SFVLNKRHAI ECLPLLLTPS QEVIAKDIHG HEWSFKHTLR GTPQRHLFTS GWNEFAKGKD LVVGDCFVFL RGENGESRVG IRKSAHHQQH NIPSPVISKQ SMHHGVVATA LNAIERKCMF GVFYKPRSSQ FLVNFDKFID GVNRKFSVGS RFLMKFEGRD FSEIRYYGTI VGVKDFSTHW KNSEWRSLEL QWDEAATIPR PDKVSPWEIE PLTHSSNILK SVFLKNKRQS EINDFGLEIG QTSIQSSVSY SFPSISKPNY NEQMVQAMKE TSTTTEAASY RLFGVDLTVP AKTKDPVQPT HSYKKSKISK IFEEEKVDHI QTKTKVCMEG AVERTMDLTV FDGYNQLIDE LERLFDIKDK LHMHNQWKIV FINADGDMML FGDDPWPTAK EIFIYSENDA KIVNADNKFA EGDPRLTTTI LPPDVNNN // ID A0A0D3BSB5_BRAOL Unreviewed; 608 AA. AC A0A0D3BSB5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g041340.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g041340.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g041340.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013631127.1; XM_013775673.1. DR EnsemblPlants; Bo4g041340.1; Bo4g041340.1; Bo4g041340. DR GeneID; 106336744; -. DR Gramene; Bo4g041340.1; Bo4g041340.1; Bo4g041340. DR OMA; VRLEDHH; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 608 AA; 66607 MW; 4FC654F8A651DE80 CRC64; MGGLIDLNVT DEQEEETTPS SGSGSLSPCD SSSSASAFGV SGSSSRSSSS GVCLELWHAC AGPLISLPKR GSLVLYFPQG HLEQAPDFSA AIYGLPPHVF CRILDVKLHA ETATDEVYAQ VSLLPESEDI ERKVREGVID VDGGEEDYEV LKRTNTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YTQPRPSQEL LARDLHGLEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD DGKLRLGVRR ASQIEGASAF SSHYNQNMNH NNFAEVAHAI STNSAFNIYY NPKASWSNFI IPAPKFLKTV DYPFCIGMRF KARVESEDAS ERRSPGIITG INDLDPIRWP GSKWRCLLVR WDDIEANGHH QQRISPWEIE PSGSISSSGS FVTTGPKRSR IGFSSGKPDI PVSGSGATDF EESLRFQRVL QGQEIFHGFI NTSSDGGAGA RRGRFKGTEF GDSYGFHKVL QGQETVPAYP MMTDQRHQGM SQRNIWCGPF QNFSTRILPP SSVHVSSPLP SSGTNVRLED HHGGSGRCRL FGFPLRDETT AVGSGMVVGP CVEGQNGSSI RGGVSAVQGN HHGRDIYGMR DMLLDIAL // ID A0A0D3BTJ0_BRAOL Unreviewed; 802 AA. AC A0A0D3BTJ0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g058460.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g058460.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g058460.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g058460.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g058460.1; Bo4g058460.1; Bo4g058460. DR Gramene; Bo4g058460.1; Bo4g058460.1; Bo4g058460. DR OMA; KMGSKMC; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 306 407 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 553 603 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 306 407 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 802 AA; 87994 MW; 61D1893E92942680 CRC64; MFEVKMGSKM CMNASCGSTS SVEWKKGWPL RSGALADLCF RCGSAYETSR FCETFHMEQS GWRECYLCNK RLHCGCIASK LVVEFMDYGG VGCTSCTNSH SKRGENPGVF SRLPMNMQQT NGERSEANLF SQPLVSGDDK REEFTPHRGF GNLMKPDNNV TTTVYTHDSS SSSPSQPSLN MALATLPYSP SFATPVVDGN KLMAAGGGAS SQSHLFQCSA SSILQKPSKT VLGTPPPGTS KSAQARIGRP PVEGRGKGHL LPRYWPKYTD KELQQISGKY PFSAYFPCQT FYFRDFILNL NIVPLFEKTL SASDAGRIGR LVLPKACAEA YFPPISQSEG IPLKVQDVRG KEWTFQFRFW PNNNSRMYVL EGVTPCIQSM RLQAGDTVTF SRVDPGGKLI MGARKATYTV DMQGCGFSNG ASNEDTSSSG VTENLTSINA PSCPSQILEG LPEHLGSPHG GNGLKKSEIN GGDDPSRGKE KKRTRTLGAK NKRLLLHSEE SMELRLTWEE AQELLRPSAN AKPTVVVIEE HEFEEFDEPP VFGKKTILTS RPSGEQERWG SCDDCSKWRR LPLDALLPAK WTCSENVWDS SRCSCSAPEE SLKELENVLK AGKEYKKRRI GVSQTARNEQ EPSGLDALAS AAVLGDALDD SSEVATTTRH PRHRVGCSCI VCIQPPSGKG RHKPTCGCTV CSTVKRRFKT LMMRRKKRQL ERDGTAAADE ENKEGVEPEK NEGEKEGRID LNSDPYNRED AEAVAVEKGE ESKKSEEGVC WGVSQGGGVL GETEVRGGEA EKTTSEEQKV AS // ID A0A0D3BU67_BRAOL Unreviewed; 703 AA. AC A0A0D3BU67; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g071620.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g071620.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g071620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013637173.1; XM_013781719.1. DR EnsemblPlants; Bo4g071620.1; Bo4g071620.1; Bo4g071620. DR GeneID; 106342709; -. DR Gramene; Bo4g071620.1; Bo4g071620.1; Bo4g071620. DR OMA; HQLDHGM; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0048589; P:developmental growth; IEA:EnsemblPlants. DR GO; GO:0010154; P:fruit development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0048441; P:petal development; IEA:EnsemblPlants. DR GO; GO:0031540; P:regulation of anthocyanin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009743; P:response to carbohydrate; IEA:EnsemblPlants. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0048442; P:sepal development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 590 669 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 77830 MW; A8AE14BFDB5927F0 CRC64; MEQERSLDPQ LWQACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR SETGELCVGI RRAKRGGLGS NGLGSDNNNN SNNPYPGFSG FLRDDEITTS KLMMMKRNGG NVNDANAPGG RVRVEAVAEA VARAACGQAF EVVYYPRAST PEFCVKASDV RSAMRIRWCS GMRFKMAFET EDSSRISWFM GTVSAVQVAD PIRWPNSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPR KKLRIPQPFD FPFDGTKFPM FSPGFAAGNN GGGESMCYLS NDNNNNAPAG IQGARQAQQL FGSPSPSLLS DLNLNTFHSG SKLQQSSSSP AMFLSGFNPR HHYDNIVLPR QTRDAEFNNN ISCSLTIGNP GLAQDKKKSD SVKTHQFLLF GQPILTEQQV MNRKRALEEE AEEEEKGGLT WNYGLQGLET GHCKVFMESE DVGRTLDLSV IGSYQELYRK LAEMFGIEER SDLLTHVVYR DANGVTKRIG DEPFSDFMRA TKRLTIKMDI SGDNVRKTWI TGIRNGENGI DSSTKTGQLS IFA // ID A0A0D3BV23_BRAOL Unreviewed; 682 AA. AC A0A0D3BV23; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g083590.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g083590.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g083590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g083590.1; Bo4g083590.1; Bo4g083590. DR Gramene; Bo4g083590.1; Bo4g083590.1; Bo4g083590. DR OMA; EIPERRF; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 563 656 PB1. {ECO:0000259|PROSITE:PS51745}. SQ SEQUENCE 682 AA; 76162 MW; B1FE58E7B89C5A2E CRC64; MDPQLAARNH SSGKPGGALS DALVRELWHA CAGPLVTLPR EGERVYYFPE GHMEQLEASM HQGLEQQMPS FNLPSKILCK VINIQRRAES KTDKVYAQIT LLPEADQSEP MSPDAPVEEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA TDLHNNERHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRQNEE LRVGVRRHMR QQTNIPSSVI SSYSMHIGVL ATAAHAITTG TIFSVYYKPR TSRSEFIVSV NRYLEAKNQK LSVGMRFKMR FEGEEAPEKS GTIVGVQENK SSVWHDSEWR SLKVQWDESS SVFRPERVSP WELEPIVANS MRSSHPPPQR NKRPRPPGLP SPTTAPSTPG ILFFFSPLYC SYLWQLHLVL LMLSSVTADG LWKSPAVNPS SVPLFSPSAN GGNKSFGVSI GSAFWPTHAD SAAESFASAV NNESPTEKKQ TNGNVCRLFG FELVENVNVD ECFSAASVSG AVAVDQPVPS NEFDSGRQPE PLNVNQSNIP SGSGDPEKSS PRSPQESQIR QIRSCTKVHM QGSAVGKAVD LTRSECYEDL FRKLEEMFDI KGELIESTKK WQVVYTDDED DMMMVGDDPW NEFCGMVRKI FIYTPEEVKK LSPKNKLTVN VRMQSKTDAE ENGNTEGRSS LF // ID A0A0D3BWC5_BRAOL Unreviewed; 320 AA. AC A0A0D3BWC5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g099000.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g099000.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g099000.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g099000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013633974.1; XM_013778520.1. DR EnsemblPlants; Bo4g099000.1; Bo4g099000.1; Bo4g099000. DR GeneID; 106339672; -. DR Gramene; Bo4g099000.1; Bo4g099000.1; Bo4g099000. DR OMA; ARVDEDH; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36546 MW; EE632D79D0626241 CRC64; MERKSNDLER SENIESQNKK MNIEEESPVQ ETSSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVITKG WSRFVKDKKL DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGVMFPR FYSYPYPQMQ ASYERHNLYH RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHMATM ASSRRDKRLR LFGVDIECGR GGRGGGGSVN STEEESSTSG GSISRGGVSM AGVGSLLQLR LVSSDGDDQS LVAMGAARVD EDHHLFTKKG NSSLCFDLDK // ID A0A0D3BZD9_BRAOL Unreviewed; 820 AA. AC A0A0D3BZD9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g136370.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g136370.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g136370.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013636814.1; XM_013781360.1. DR EnsemblPlants; Bo4g136370.1; Bo4g136370.1; Bo4g136370. DR GeneID; 106342431; -. DR Gramene; Bo4g136370.1; Bo4g136370.1; Bo4g136370. DR OMA; CENLPQR; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 714 798 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 820 AA; 90503 MW; AF5C2A0F9372E19F CRC64; MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRAIRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDSVRWSNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLHDGRGEL GSGLPWLRGG GGGEQQGLLP LNYPSVGLFP WMQQRLDLAQ LGTDNNQQYQ AMLAAGLQNM GGGDPLRQQF VQLQEPPPSH HQYLQQSASH NSDLMLQQQQ QHHLMHAQTQ IMCENLPQRQ EVSKQQPAGG GGQQSVDQNA YLNALKMQNG QLQQWQQHSD MPSPSSFMKA DFTDKFATTA SPIQQNSASP GSGHGSNLLN FSITGQSALP EQLIGEGWSP KASNTFSEPL SLPPQAYAGK SLALEPASAN VNPSVFGVDP GSGLFLPSTV PRFASSSSGG DVEAYPMSLA DSGFENSLYN SCMQDTTHEL LHGVGQINPS NQTKNFVKVY KSGSVGRSLD ISRFSSYHEL REELGKMFAI EGLLEDPLRS GWQLVFVDKE NDILLLGDDP WESFVSNVWY IKILSPEDVQ EMGDHGEGSG GSLPQNPTHL // ID A0A0D3C0C0_BRAOL Unreviewed; 148 AA. AC A0A0D3C0C0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g140670.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g140670.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g140670.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g140670.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g140670.1; Bo4g140670.1; Bo4g140670. DR Gramene; Bo4g140670.1; Bo4g140670.1; Bo4g140670. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 17166 MW; 5AF79703ACECB1ED CRC64; MENEQRSRPQ DRTKAYGEPK SVRNGGESRD DRRLFPRRTT AICLRRLNKM ANPHEPHFFK PLLPGFQSGV TIPLAFFSKH IEGKTNQKTW KLRSDASDQT WEVIQEDRTL TRGWKDFTTA HDLQIGDLVI FKHEGDMVFH VTPFGPSC // ID A0A0D3C1U3_BRAOL Unreviewed; 234 AA. AC A0A0D3C1U3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154810.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154810.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154810.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154810.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g154810.1; Bo4g154810.1; Bo4g154810. DR Gramene; Bo4g154810.1; Bo4g154810.1; Bo4g154810. DR OMA; NDHKNKA; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 234 AA; 27274 MW; 4BDF1B80C0E94184 CRC64; MEGRNDHKNK AKLRSEASEM TWKVKIEDGR RLTEGWKEFA LAHDLRVGDI VIFRQEKDMS FHVTLFGPSC CEIQYGSCID QDNNLEKIQE KKNPKREEAE SSCFVANVRQ ESDEESNHIS SQERIDREDK KGSTSQSRFV TLTIRYWDVK NSRLYLPMAF TKDNGINVKT KLALLDKNDV KWPTDLRSEY NGKRIRMIGG WKKFFKANFL KMGESIKFKL IWDGDTSCVL KLCS // ID A0A0D3C1U5_BRAOL Unreviewed; 378 AA. AC A0A0D3C1U5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154830.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154830.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154830.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154830.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013636296.1; XM_013780842.1. DR EnsemblPlants; Bo4g154830.1; Bo4g154830.1; Bo4g154830. DR GeneID; 106342050; -. DR Gramene; Bo4g154830.1; Bo4g154830.1; Bo4g154830. DR OMA; TSSIWKA; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 42931 MW; 19E5957FB64E4790 CRC64; MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLKL TEGWKEFALA HDLRVGDIVV FRQENDMAFH VTLFGPSCCE IQYGSCLDDK NKLVAIQSSK KKMKNTKREA ESSTLEPSCY VANVTPSSLR YDMLNIPKSF ARANGIESRS GEIVLMNEKG TSWTLILKRK NSCGTMYITR GWRRFCGANG LKAGCFFTFK LIQRGGTLVL HKSPSSTESE DSSEGDEIAP LSTESKSFKK TSSIWKASSS SFQNLFVTLT LKPYEVEKST LYLPVQFTRR HSINEETKMR LLDKNGVKWS TDLRSEKRSD KIRLVGGWKE FFKANCVEMG ESIIVKLIWD GDTSCVLKFC SKVKQETR // ID A0A0D3C1U6_BRAOL Unreviewed; 511 AA. AC A0A0D3C1U6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154840.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154840.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154840.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154840.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013632077.1; XM_013776623.1. DR EnsemblPlants; Bo4g154840.1; Bo4g154840.1; Bo4g154840. DR GeneID; 106337520; -. DR Gramene; Bo4g154840.1; Bo4g154840.1; Bo4g154840. DR OMA; CFLANIW; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 408 506 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 408 506 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 511 AA; 58517 MW; 951963AA1A4B7F97 CRC64; MRMVNKRFFK PLLPGFHSHL TIPVAFFVKY IEAKNEHHTT KLRSDASKIT WEVKIEDGQK LTDGWKEFAL AHDLRIGDIL IFKQEKDMAF HVTLLGPTGC EIQYESCSEE ENNFGNIPKK KNSKREAESS SLDPSCFLAN IWPSSLRYDS LNLPRSFVRA NGLETRCGRE IVLINEKGKS WTLALRQKLS GPTYIRRGWR SFCIANGLKT GGVYTFKLIK RGRAPVLRLS STESELEERN IEKIQRNKAE SSSLDPSCFV ANISRATLRY DTLGLPMKFS RENGLEARCG EIVLMNEKGR SWKLNLKRKR SCGTMYITQG WRSFCSANGL RAGSSSTFKL IKRGGTLALR LSSKETEEEE EDCSLKANEV ESLSTEPESD EEGSQDEKQI KKHRSTWKAS SSQSQNRFVT LTFRPFNLEK YLLFLPLRFT RWHGINEETK MRLLDKNGVK WSTDLRSGKT NIDKIRLVGG WQEFFKANCV KTGESIIVKL IWDGDKSCIL KFCSKVKHET E // ID A0A0D3C1U7_BRAOL Unreviewed; 485 AA. AC A0A0D3C1U7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154850.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154850.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154850.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154850.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g154850.1; Bo4g154850.1; Bo4g154850. DR Gramene; Bo4g154850.1; Bo4g154850.1; Bo4g154850. DR OMA; FAMENDI; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 283 379 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 384 481 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 283 379 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 384 481 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 485 AA; 55378 MW; 71442FDE7F693636 CRC64; MVIKHFFKPL RPGFHSHLTI PVAFLKYIEG TNGHHSAKLR SDASKITWEV KIEDGRRLTS GWIEFALAHD LRIGDILIFR QEKDMAFHVT LLGPSGCEIQ YDLVFRRREQ HREYSREKES EEENPRKETE SASLDPSCFV AYVSPATLRH DKLNLPRSFV RVNGLETTCG EINLMNEKGR SWTLALKQEL CGSTYIRRGW RSFCSSNGLK TGGLYNFKLI KRGRTSVLRL SSTGSDLEEE SSEGDEVESL STGPESDEGT KTNLEKKKSP KKDAESSSLD HSCYVANVTP SSLQDDRLDL RKSFVRANAL ETRCGEIVLT NEKGTSWKLD LKRKRSCGNM YITRGWRRFC RVNGLRAGCF FTFKLIRTGG TLVLRFSSRF DNNFVTLTLK PSNLTSYKLV LPLHFTKRHG INEKTKMTLL DKNGVKWFTN LRSEKTSDRV RLVGGWKDFF EANCVEIGES IVLKLIWEGD KSCALKFCSK VKHET // ID A0A0D3C1U9_BRAOL Unreviewed; 199 AA. AC A0A0D3C1U9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154870.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154870.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154870.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154870.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g154870.1; Bo4g154870.1; Bo4g154870. DR Gramene; Bo4g154870.1; Bo4g154870.1; Bo4g154870. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 70 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 101 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 70 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 101 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 21881 MW; 05CEEEF84A6A8B5C CRC64; MTKPGLITLV GKDGVKWKVN LYEERSGSSL CLGKGWKEFA KANGLKTGEY FTLELVWENE IPMLSLVNTE SASDRKQRGE PSKAMEKERS TDTSSIVQNR VVTLALETKD VKACTLHLPS EFVTAIGIKK LGKITLLGKD GMKWWGCLLS RDGTVAVGIG WRNFCEANGV KLGDSFSLVF INEEEDTGPV FKFSPNSGN // ID A0A0D3C1V0_BRAOL Unreviewed; 300 AA. AC A0A0D3C1V0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154880.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154880.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154880.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013632078.1; XM_013776624.1. DR RefSeq; XP_013632079.1; XM_013776625.1. DR EnsemblPlants; Bo4g154880.1; Bo4g154880.1; Bo4g154880. DR GeneID; 106337522; -. DR Gramene; Bo4g154880.1; Bo4g154880.1; Bo4g154880. DR OMA; CPTESNH; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 33229 MW; CFEF85DDCA5DF74E CRC64; MNNSETKVKT EADSSSSDHP CPLALVTASN VRKDTQCLRQ DLCPTESNHD GTQGDNNKKK RRGRRPPTSP SQKQFMKLKL AHDSLIKYRQ YLSVPFMRAN GMTKPGLITL VGKDGVKWKV NLYEERSGSS LCLGKGWKEF AKANGLKTGE YFTLELVWEN EIPMLSLVNT ESASDRKQRG EPSKAMEKER STDTSSIVQN RVVTLALETK DVKACTLNLP SEFVTAIGIK KLGKITLLGK DGMKWWGCLL SRDGTVAVGI GWRNFCEANG VKLGDSFSLV FINEEEDTGP VFKFSPNSGN // ID A0A0D3C1V1_BRAOL Unreviewed; 354 AA. AC A0A0D3C1V1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154890.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154890.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154890.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g154890.1; Bo4g154890.1; Bo4g154890. DR Gramene; Bo4g154890.1; Bo4g154890.1; Bo4g154890. DR OMA; KEREDCS; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 86 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 106 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 252 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 86 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 106 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 39918 MW; 973F8A889E8010C3 CRC64; MVVQLVQGRR LIGASTTVSG QARSNIGCAV GSVREREALG SVLGRAEAGA EVLDEFAIAH DLRIGDILIF RQEKDMAFHV TLLGPSGCEF QYESCSEEEN NLDPSSFVAN ITRATLRYDT LGLPMKFSRE NGLDTRCGEI VLMNDKGRTW KLNLKRKRSC GTMYITQGWR SFCSANGLRA GSFFTFKLIK KGGTQVLRLS PKEREDCSSE ANEMESLSTE TESDEESSQY EKQIKKHRST WKASSSQSQN RFLTLALKPF NLEKYILYLP VRFSRSHGIN EEAKMTLLDK NGVKWSTDLR SEETSDRIRL VGGWQEFFKA NCMKPGESII VKLIWEGDKS CVLKFCSKVK HETK // ID A0A0D3C1V2_BRAOL Unreviewed; 179 AA. AC A0A0D3C1V2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154900.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154900.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154900.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g154900.1; Bo4g154900.1; Bo4g154900. DR Gramene; Bo4g154900.1; Bo4g154900.1; Bo4g154900. DR OMA; YIEGRNE; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 179 AA; 20374 MW; A77135CDF6C29D44 CRC64; MLLQTIPVAF LKHIEGTNEH HKAKLRSDAS KITWEVKIED GRRLTNGWKE FALAHDLRIG DILIFRQEKD MAFHVTLLGP SGCEIQYESC SEEENNIGNI PKKKKVKKNP RKETESTSLD PSCFVAYVSP ATLRHDKLNL PRSFVRANGL EKRCGDIVLM NEKSKSRTLA LKQELFGNT // ID A0A0D3C1V3_BRAOL Unreviewed; 276 AA. AC A0A0D3C1V3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154910.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154910.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154910.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154910.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013633252.1; XM_013777798.1. DR EnsemblPlants; Bo4g154910.1; Bo4g154910.1; Bo4g154910. DR GeneID; 106338938; -. DR Gramene; Bo4g154910.1; Bo4g154910.1; Bo4g154910. DR OMA; EDTGPIF; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 178 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 178 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 30270 MW; 1C95AFF295F907A1 CRC64; MNNSEKEVKT EADSSSSDHP CPLALVTASN VRKATQCRER RPPTSPSQKQ FMKLKLAHDS LIRGRQYLSV PFMRANGMTK PGLITLVGKD GVKWKVNLKE EGSGSALCLR TGWKEFAKAN GLKTGDYFTL ESAWKNEIPM LSLVNTESAS DRKERGESSK AMEKERSTDT SSIVQNRVVT LALETKDVKA CTLNLPSEFV TAIVIKKLGK ITFLGKDGMK WWGCLLSGNG SVAVGIGWRN FCEANGVKLG ESFSLVLINE EEDTGPIFKF SPNSGN // ID A0A0D3C1V6_BRAOL Unreviewed; 85 AA. AC A0A0D3C1V6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154940.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154940.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154940.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154940.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g154940.1; Bo4g154940.1; Bo4g154940. DR Gramene; Bo4g154940.1; Bo4g154940.1; Bo4g154940. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 54 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 54 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 85 AA; 10068 MW; 4E051EA2269548A3 CRC64; MVRTTLSKTT SNRFYMNRGW RSFCVANKKK PEDMFKFKLV QNEETPVIQL LPLNSEYLHK VEPSDECDTR QGLGATEKRV SWRRN // ID A0A0D3C1V7_BRAOL Unreviewed; 123 AA. AC A0A0D3C1V7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g154950.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g154950.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g154950.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g154950.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g154950.1; Bo4g154950.1; Bo4g154950. DR Gramene; Bo4g154950.1; Bo4g154950.1; Bo4g154950. DR OMA; EEGSWIE; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 123 AA; 13959 MW; B5DC86FC6A568E14 CRC64; MANSPLHSPI NPHFFQPLLP GFTNHLDIPV AFFLKHLERN NKRKTAKLRS DASETTWRVE IDGQRLSDGW EDFAVGHDLR LGDIVIFRHE GELVFHVTAL GPSCSEIQYG GYSDEEEDKK GKS // ID A0A0D3C332_BRAOL Unreviewed; 774 AA. AC A0A0D3C332; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g173060.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g173060.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g173060.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g173060.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013633557.1; XM_013778103.1. DR EnsemblPlants; Bo4g173060.1; Bo4g173060.1; Bo4g173060. DR GeneID; 106339312; -. DR Gramene; Bo4g173060.1; Bo4g173060.1; Bo4g173060. DR OMA; MHSEDAL; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 530 580 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 286 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 680 704 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 774 AA; 85013 MW; 84ABF4D8A88287E9 CRC64; MFQVKTGSKM CMNASCGSTS TVEWKKGWPL RSGALADLCF RCGSAYETSL FCETFHLDQS GWRECYLCNK RLHCGCIASK LVVEFMDYGG VGCSTCTNCH QPNLGKIGEN PGLFSRLPMN RQHTNGENGM NVGKADLFSQ PLVQGDDKRE EFMPHRGFSN LIKTDRLDGG EILESSSTPS QPPSLNMPLA ALPYSLNFAT ATKKLMDAAS QPHAVQSSSS SILQTPSKSV LGTPPGTSKS AQARIGRPPN EGRGRSHLLP RYWPKYTDKE LQQISGNLNL NIVPLFEKTL SASDAGRIGR LVLPKACAEA YFPPISQSEG IPLKIQDVRG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM MLQAGDTVTF SRVDPGGKLI MGFRKATHTK DIQGCGLTNG TLNEDTSSSG VTETPTSINA SSCPSQNPEE LKGLPEHLNS NHGGSSLKKS EVNGVKDKKR TRTVGAKSRR LLLHSEESME VRITWEETQE LIRPSPSEKP TVVVIEEHEF EEFYEPPVFG KRTIITSKPS GEQERWASCD DCSKWRKLPV EALLPAKWTC SDNVWDESRC SCSAPEESLK ELENVLRMSK EYKKRRTGVS QTVRTEEELT GLDALASAAA LGDTLGEEEE PATTTRHPRH RVGCSCIVCI QPPSGKGRHN SSCLCTVCST VKRRFKTLMM RRKKKQLERE EIEAAAAADQ ENKEDGKTGR IDLNSDPCNR GEVEAVGVEE KEESGKGEAG ECLGVAQAGD VVGVTELEGE GEKIGEESKG SKLI // ID A0A0D3C413_BRAOL Unreviewed; 594 AA. AC A0A0D3C413; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g182310.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g182310.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g182310.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013631443.1; XM_013775989.1. DR EnsemblPlants; Bo4g182310.1; Bo4g182310.1; Bo4g182310. DR GeneID; 106336983; -. DR Gramene; Bo4g182310.1; Bo4g182310.1; Bo4g182310. DR OMA; IVDYPFC; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 594 AA; 65639 MW; 055DA83AADE47A41 CRC64; MGGLIDLNVT EEEDETLSSA SGSLSPSNSS SSAFGVSGSS SFSSSSGVCL ELWHACAGPL ISLPKRGSLV LYFPQGHLEQ QAPGFSAAIY GLPPHVFCRI LDVKLHAETD TDEVYAQVSL LPESEDIERK VREGVVDGGD QEDYEVLKRT YTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQP RPSQELLARD LHGLEWRFRH IYRGQPRRHL LTTGWSGFVN KKKLVSGDAV LFLRGDDGKL RLGVRRAAQF EGASAFSTQY NQNTNHNNFS EVAHAISSNS AFNIYYNPKG SWSNFIVPAK KFLKIVDYPF CIGMRFKARV ESEDASERRS LGIITGISDL DPIRWPGSKW RCLIVRWDDN EASRHQQRVS PWEIEPSGSI SSSSSFITTG PKRSRIGFPN IPVSEGIHAT DFEESLRFQR VLQGQEKFPG FINTSSDGGA GARRGRFKGT EFGDSYGIHK VLQGQETVPV YSMTAHQQQG LSQRNIWCGP FLNFGSRVLQ PSSSPSSVLI TNSNSPNGRL EDHHGGSGSR CRLFGFPLRD EPTAMVVPCV EGQKSASDVQ SNHHHHSQGR DMYGMRDMLL DIAL // ID A0A0D3C487_BRAOL Unreviewed; 206 AA. AC A0A0D3C487; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g183050.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g183050.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g183050.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g183050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo4g183050.1; Bo4g183050.1; Bo4g183050. DR Gramene; Bo4g183050.1; Bo4g183050.1; Bo4g183050. DR OMA; VKEYPLA; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 146 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 146 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 206 AA; 23836 MW; 054CCF52BDB2EE6C CRC64; MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLA NKMVIIAKCG SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEITI PNLFKKHIPN EQTMFTIHSK GSGCGSWEVW CLVREAQATF SRGWSKFARE YPIEIGDKCT LQLIKPNECV LTISNKAKEE EITVID // ID A0A0D3C6M9_BRAOL Unreviewed; 304 AA. AC A0A0D3C6M9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo4g197410.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g197410.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo4g197410.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo4g197410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013631735.1; XM_013776281.1. DR EnsemblPlants; Bo4g197410.1; Bo4g197410.1; Bo4g197410. DR GeneID; 106337215; -. DR Gramene; Bo4g197410.1; Bo4g197410.1; Bo4g197410. DR OMA; SITMTHG; -. DR Proteomes; UP000032141; Chromosome C4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 33914 MW; FE9FBEE303CA5CD1 CRC64; MMTNLSLARE GEAEAKKPIE EVEREHMFDK VVTPSDVGKL NRLVIPKQHA ERYFPLDSSS NGKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRCVGDS RLFIDWRKRP KVPDYPTSGV HFAAGAMFPR FYSFPTATTS TCYDLYNHQP PRHHHIGYGY PQIPREFGYG YFVRSVDQRA VVADPLVIES VPVMMRGGAR VSQEVVGTAG KRLRLFGVDM ECGESGVTNS TEEESSSSGG SLPRAGGGGA SSSSSLFQLR LGSSCEDDHF SEKGKSSLPF DLDQ // ID A0A0D3C710_BRAOL Unreviewed; 344 AA. AC A0A0D3C710; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g002790.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g002790.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g002790.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g002790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013638739.1; XM_013783285.1. DR EnsemblPlants; Bo5g002790.1; Bo5g002790.1; Bo5g002790. DR GeneID; 106343926; -. DR Gramene; Bo5g002790.1; Bo5g002790.1; Bo5g002790. DR OMA; NMECGND; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 38902 MW; D0AE4F2419EEFDB7 CRC64; MDLSLAPTSS DQEQDKDQEL ASNIGASSSS GTANNTNFPM MMIPPPEKEH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DSTNNQNGTL LNFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG IGDESQRSKL YIDWRHRPDM SLVQAHQFGN YGFNFNFPTT SQYSNRFHPL PEYNSVPIQR SLNIGNHQRS YYNNQRQEFV GYGYGNLAYY TGSPLDQRSI VGSEPLVIES VPVVPGRLPP VMMLPPPLPP PPSTAGKRLR LFGVNMECGN DYDQHDESLL VPRGEMGASS SSALRFNLSN DHDDGDDDQF AKKGKSSFSL DFSP // ID A0A0D3C9F6_BRAOL Unreviewed; 341 AA. AC A0A0D3C9F6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g015210.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g015210.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g015210.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g015210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013637759.1; XM_013782305.1. DR EnsemblPlants; Bo5g015210.1; Bo5g015210.1; Bo5g015210. DR GeneID; 106343158; -. DR Gramene; Bo5g015210.1; Bo5g015210.1; Bo5g015210. DR OMA; KHTYLEE; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 185 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 185 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38099 MW; 1E865A5F80101697 CRC64; MEVSSVDEST TCTGSICETP AMTSAKSSVN LHRMGSGSSV VLDSENGVEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VYRFRGRDAV TNFKEARLDD GEFEFLSSHS KAEIVDMLRK HTYSEELEQS KRRRNGNGNT AKTMTSSLNG DGVSTTEFRS AEALFEKAVT PSDVGKLNRL VIPKHHAEKH FPLPSSNVSV KGVLLNFEDV TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLLAGDVVS FSRSEGQDQQ LYIGWKSRSG PDVETGRVLR LFGVNISPES SRTEVVGSKR VNDTEILSSV CSKKQRIFHA S // ID A0A0D3CAU3_BRAOL Unreviewed; 140 AA. AC A0A0D3CAU3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g022070.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g022070.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g022070.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g022070.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013584789.1; XM_013729335.1. DR EnsemblPlants; Bo5g022070.1; Bo5g022070.1; Bo5g022070. DR GeneID; 106293671; -. DR Gramene; Bo5g022070.1; Bo5g022070.1; Bo5g022070. DR OMA; FISHKSA; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 140 AA; 16189 MW; EFF67ECDCCC449D9 CRC64; MAAPDEDQRF IKPFISHKSA KSLAIPLAFN EYFPDPLPNT VELLDYYGRS WTIRMKKRGE TVFLTVGWEN FVKDNELEDG KMMEFIYDCD RTFYVVIFGH GGVSELRVFP QAVVDVGDYA TGEEEGEEEE EEEEEKNKSN // ID A0A0D3CBG4_BRAOL Unreviewed; 1052 AA. AC A0A0D3CBG4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g027250.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g027250.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g027250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013586633.1; XM_013731179.1. DR EnsemblPlants; Bo5g027250.1; Bo5g027250.1; Bo5g027250. DR GeneID; 106295312; -. DR Gramene; Bo5g027250.1; Bo5g027250.1; Bo5g027250. DR OMA; QGLWNSQ; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 924 1017 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1052 AA; 116627 MW; 54D1404FBA257760 CRC64; MKAPSNGFHP NPTEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKINR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA GAAAATTHLP SSYNLPNNFS PNDHSKLLNF QSPNLSPAIT QFNKPNMVSH ISQQMQAQPA MVQSQQQQQQ QLQQQVQMSH QQLQQQHHQH QQQGGYNSGS VNNGVSVVSN QVSCQNQSAG FTQSQQQSML SNGAKMTHQN MVSAGNKGSS QMTAQELQFQ QQLELHNSTQ LLRNQQEQSS MHSLQQNPQQ LQMQQQQSSK PSPSQQFQLQ LLQKLQQQQQ STPPPVSSSL QPQLSSLQQT QSHQLQQLLS SQNQQPLPQS NNNSFMQPPQ IQASHHQQQG YMNNNKPIVR SQSGHIDGEA PSCSTSPSAN NTGHDNVSPT NFLSRNQQQG QGVSVPASDP VQQGMVNLKS AGEQFKFKAA VTDQIDVTTA GTTYCPDVVV GPGQQQQQTF PLPSFGFDGD LQQSQHPRNS LAFAGNIEAV NPDALYSQKD FQNLVVPNYG NAPRDIETEL SSASQSFGIP SIPFKSGGSN EIGGINDSGI MNGGIWPNQA QRMRTYTKVQ KRGSVGRSID VTRYSGYEEL RNDLARMFGI EGQLEDPQIS DWKLVYTDHE NDILLVGDDP WEEFVNCVQN IKILSSAEVQ QMSLDGDLAA IPTTNQACSE TDSGNAWKVH YEDTSAAASF NR // ID A0A0D3CBN2_BRAOL Unreviewed; 880 AA. AC A0A0D3CBN2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g027930.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g027930.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g027930.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013586461.1; XM_013731007.1. DR EnsemblPlants; Bo5g027930.1; Bo5g027930.1; Bo5g027930. DR GeneID; 106295175; -. DR Gramene; Bo5g027930.1; Bo5g027930.1; Bo5g027930. DR OMA; SSWKLVY; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 770 854 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 880 AA; 97244 MW; BDE752F3E3FBA56F CRC64; MMASLACVEE KMKTNGLVNG GTTTTSQSTL LEEMKLLKDQ SGTRKPVINS ELWHACAGPL VCLPQVGSLV YYFSQGHSEQ VAVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE IYAQMSLQPV HSEKDVFPVP DFGLLSRSKH PAEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTAQP PTQELVVRDL HENTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL FIRDEKSQLM VGVRRANRQQ TALPSSVLSA DSMHIGVLAA AAHATANCTP FLIFYNPRAC PAEFVIPLAK YRKAICGSQL SVGMRFGMMF ETEDSGKRRY MGTIVGISDM DPLRWSGSKW RNLQVEWDEP GCNDKPNRVS PWDIETPESL FIFPSLTSGL KRQLHPSYFA GETEWGSLIK RPLIRDSTNG ILPYASFPNM ASEQLMRMMM RPHNNNNNNN QNASSFMSEM QQNVLMGHGG LLGDMNMQQQ PMVSEMVRPE SKLTVNPSAS NTSGQEQNLS QSMSAPPKPE KPTLSGCSSV RVNHGNEQKS VEQASQVRAV AVCNESALSP LQADPSPDTS QQIYPPQSNG FSFLESEELT SQVSSFQSLA GSYKQPPMLT SQDSSAVVLP DSTNSPLFHD VWDNQLKFDQ FSPLMNQDLY GCQDSTTSNI LDPPPLSNTV LDDFCAIKEA DFQNHHPSDC LVGNSNTSFA QDVSQITSAS FADSKAISRQ DNSGGTTGTS SSNVDFDDNS LLQQNSKGSW QKLAATPRVR TYTKVQKTGS VGRSIDVTSF RDYRELKTAI ECMFGLEALL TRPQSSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIKIL SPTEVEHMSE EGMKLLNSAC INDLKSSVSK // ID A0A0D3CD61_BRAOL Unreviewed; 371 AA. AC A0A0D3CD61; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g043120.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g043120.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g043120.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g043120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013637910.1; XM_013782456.1. DR EnsemblPlants; Bo5g043120.1; Bo5g043120.1; Bo5g043120. DR GeneID; 106343287; -. DR Gramene; Bo5g043120.1; Bo5g043120.1; Bo5g043120. DR OMA; KQTMINA; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 196 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 196 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 371 AA; 40853 MW; B774A1B3692365F3 CRC64; MDNSCIDDST SNTSGSLSTS TPSAKKKLSP PPPPPATMRL YRMGSGGSSV VLDSENGVET ESRKLPSSKF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE EEAAASYDIA ARRFRGRDAV TNFKSPAIDG TDAESAFLEA HSKAEIVDML RKHTYADELQ QSKRKFLDGN GKRCGSGTAT MSNGNDGVSR AREVLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLPAMTTA TVVAAMTPSP TKGVLINLED RMGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV CFERSTGPDR QLYIDWKVQS GTEEITPVQS VVRLFGVNIF NATTNAKPND VAVECGGKKR SREVDLFALG CSKKQTMINA L // ID A0A0D3CDE6_BRAOL Unreviewed; 547 AA. AC A0A0D3CDE6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g044960.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g044960.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g044960.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g044960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo5g044960.1; Bo5g044960.1; Bo5g044960. DR Gramene; Bo5g044960.1; Bo5g044960.1; Bo5g044960. DR OMA; SCEDDSK; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 165 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 279 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 448 546 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 165 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 279 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 448 546 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 547 AA; 61514 MW; 2991D5ABA1AA18D9 CRC64; MKCSTMADDQ SLHSPITPHF FQPLLPGFHT HLNIPVAFFL KHVQGLSNDH IKTAKLTTDA STKTWLVKVD GVRLTDGWED FAVGHDLRIG DITIFRHEGE MVFHVTAFGP SCCDIQYTSA SSHNINDDGQ DQTNNTVTGN SSGERRKRVK KNPRTKEDSS SDHSQFVAHV SPSSLSSDRL YIPTGFARSN GLNNMSGKQI IVLLNEEGRS WNLNMTYNKV GMQTFVRPGW RRFCAENGMK KGHQYTFKLV RKSAPPVIRL SRAEHESKLA PESSLHHSYF MGSVSSNSLT TDKLYLQRQF VTTNGLEKGL SEITLKNEWG GSWILGLRHY EPHNHTYLGP GWKTFCQANG IKAEDSFMLK LVETGDTPVL LLCSSNRGKT PLECSEDRDD VNSVSSDTSC EDDSKEESQE SDKESIEDED SSRQCIVMEK EKNSLRCICS SPYSKYRFVR LTLTQSALKT SVLYLPLAFT RMNGINKPRK IMLLGKDGVK KQVVDLLKNK SSGTMRIGKG WREFCDAHGV KVGESFQLEL FREDEESIPV LKFCTTT // ID A0A0D3CDE7_BRAOL Unreviewed; 536 AA. AC A0A0D3CDE7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g044970.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g044970.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g044970.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g044970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013638638.1; XM_013783184.1. DR EnsemblPlants; Bo5g044970.1; Bo5g044970.1; Bo5g044970. DR GeneID; 106343853; -. DR Gramene; Bo5g044970.1; Bo5g044970.1; Bo5g044970. DR OMA; DCVEMEK; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 156 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 365 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 535 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 156 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 438 535 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 536 AA; 60319 MW; 752163CE031CC367 CRC64; MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TYASAKTWLV KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID DSQDQANNTG NSSGEKRKRV KKNPRTKEES SSDHSHFVAH VSPSSLSCDR LYVPKGFAMS NGLDNMSGKE IVLLNEEGRS WNLNITYNES GMHTFVRPGW RSFCAENGMN QGHHCTFELV RKSAPPVLRL SRAEHDPKLA PESSLHHSYY VGSVSSNSLR TDKLYLQMKF VAANGLKKGF SEIILENEWG GRWSVGLRHY ASSNRTYLGP GWKTFCQVNG IKAEDSFMVK LVETGDKPVL LLCTSNRGKT PLECSEDSDD VNSLSSDTSS GDDSGEESQE SEEESLEDDS SSKDCVEMEK RKRSLRCKYP SSYSKHRFVR LTLTQNALKT SVKHLPLGFT RVNGINKPRK IILLGKDGVK KWVVDLLKNK STGTMRIRKG WRELCDAHGV KVGESFLLEL IWDEEAIPVL KFCTKL // ID A0A0D3CDE8_BRAOL Unreviewed; 530 AA. AC A0A0D3CDE8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g044980.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g044980.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g044980.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g044980.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013638639.1; XM_013783185.1. DR EnsemblPlants; Bo5g044980.1; Bo5g044980.1; Bo5g044980. DR GeneID; 106343854; -. DR Gramene; Bo5g044980.1; Bo5g044980.1; Bo5g044980. DR OMA; SECGGRW; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 158 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 362 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 430 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 362 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 430 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 59615 MW; 6B34D85E9D315650 CRC64; MADDQSLRSP MTPHFFQPLL PGFHTHLNIP VAFFLKHVQG LSNDHIKTAK LTTDASTKTW LVKVDGVRLT DGWEDFAVGH DLRIGDITIF RHEGEMVFHV TAFGPSCCDI QYTSASSHNI NDDSQDQTNN TENSSGEKRK RVKKKPRRKE ESSSDHSHFM AHVSPSSLRF DRLYVPISFS RSNGLDNMSG KEIVLLNQEG RSWNLNITYT KASVQTLVGP GWRRFCAENG MNQGHHYTFK LVGKSAPPVI RLSLAEPAPE PSLHHSYYVG SISSNSLRTD KLYIQRKFVN ANGLKGLSEI ILKSECGGRW SLGLRYYKSL DHTYLGPGWK TFCQVNGIKT GDSFMFKVVE TGDKPVLLLC SYNHGKIPLE CSEESDDVNS LSSDTSSGES QESEEENFED EGSSEESFEM VKRENSSRCR ASSSYSQDRF VKLTLTPRAL KTYKLMLPLG FTRVNGINKP GKITLLDKDG VKKQVVDLLD QNRNIGIMRL GKGWREFCDA HGVKVGQSFL LELIWEDEEA IPVLKFCTKL // ID A0A0D3CE81_BRAOL Unreviewed; 360 AA. AC A0A0D3CE81; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g055730.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g055730.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g055730.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g055730.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013585180.1; XM_013729726.1. DR EnsemblPlants; Bo5g055730.1; Bo5g055730.1; Bo5g055730. DR GeneID; 106294123; -. DR Gramene; Bo5g055730.1; Bo5g055730.1; Bo5g055730. DR OMA; RERNHYE; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 41240 MW; 1851908513F67974 CRC64; MDNFLPFSSS NANSVEELSM DLNNNRSRLS TFPTYDHHHQ AQHHSLQPYS YVACPVDQTA AMNPQISVIQ TGSEFGSLVC NPGFRQARGG FLDPHTTKMA RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY SSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVE MRDADSMQNW SFKYKFWSNN KSRMYVLENT GEFVAEKRVE IGDFLTIYED ESKNLYFSIR KHADKPNEGR EDESMEANDM NFYEDIAFDF IPKDEDEDSI AMLIGNLNDH YPNPNNLMDL PIDLHQHHQA TSSLPPVDYM TNPQYSGSSN DHMSFNDFVW // ID A0A0D3CEU4_BRAOL Unreviewed; 900 AA. AC A0A0D3CEU4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g062810.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g062810.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g062810.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013586187.1; XM_013730733.1. DR EnsemblPlants; Bo5g062810.1; Bo5g062810.1; Bo5g062810. DR GeneID; 106294993; -. DR Gramene; Bo5g062810.1; Bo5g062810.1; Bo5g062810. DR OMA; SLCHQQS; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 757 841 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 900 AA; 99002 MW; 8F1EC9E80648E47F CRC64; MRLSTAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGPPSFHGLK EDDMSMGMGM SSPLMWDRGL QSLNFQGMGV NPWMQPRLDA SGLLGMQNDV YQAMAAAALQ DMRGIDPAKA AASILQFQNP SGFSMQPPSL MQPQMLQQQL SQQQQQLSQQ QQQQSYLPVP ETHQPQSQSN NLLSQQQQVV DNHNQSASSA AAVSAMSQFG SASQSMTSLC QQQSFLDTNG GNNNPMSPLH TLLSNFSQDE SSQLLNLTRT TNSAAMTSSG WPSKRPAVDL SSFGNNSNTQ SVIEQLGQSH NTSNVPPNAV SLPPFPGGGR ECSIEQEGGS PSDPHSHLLF GVNIDSSSLL MPNGMSNLRS IGIEGGDSTT LPFTTSNFNN DFSGGNLAMT TPSSCIDEPG FLQSSENLGS ENQQSNNTFV KVYKSGSFGR SLDITKFSSY HELRSELARM FGLEGQLEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVSS VWCIKILSPQ EVQQMGKRGL ELLNSAPPSS NNNVVEKLPS NNGNCDDFGS RSDPRNLGNG IASVGGSFNY // ID A0A0D3CFU5_BRAOL Unreviewed; 221 AA. AC A0A0D3CFU5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g076230.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g076230.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g076230.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g076230.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013638010.1; XM_013782556.1. DR EnsemblPlants; Bo5g076230.1; Bo5g076230.1; Bo5g076230. DR GeneID; 106343376; -. DR Gramene; Bo5g076230.1; Bo5g076230.1; Bo5g076230. DR OMA; PKESSAI; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005886; C:plasma membrane; IEA:EnsemblPlants. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0034613; P:cellular protein localization; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009409; P:response to cold; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25501 MW; A257062A6AB6AC8F CRC64; MNMDSAHNEF NKRARLFEDR QKEETRVTHP LIPESNAPLN EGYEGSTTTQ SLFTDSKPEE TPKIPKKRGR KKKNPNPEEI NSSTPENSSK FYKSASDRKR TVTAEERERA ISAAKTYEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGIAGFIKLQ LGEKQWPVRC LYKAGRAKFS QGWYEFTLEN NIGEGDVCVF ELLRTRDFVL KVTAFRVTQY V // ID A0A0D3CG31_BRAOL Unreviewed; 239 AA. AC A0A0D3CG31; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g080060.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g080060.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g080060.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g080060.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo5g080060.1; Bo5g080060.1; Bo5g080060. DR Gramene; Bo5g080060.1; Bo5g080060.1; Bo5g080060. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 61 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 61 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 28513 MW; CB78F157EFEB462C CRC64; MRQWKFRYCY WTSSQSFVFT SGWKRFVKEK NLKERDVIVF YRCDLVGQSN NFLMIHVQYS SEGEVKTENF VNPKLKEEET KSVENKGGFM LFGDRKDSEN LGSTIEEHRP CHFRSSTIGG VTKVKHRDKL ERVDCTYRCY YHQARVFYPH GRVHYLPIRK EVGPQDTEEE LNRLRYTLLE ADLGCNTDSK ILMWPLFREL QEGFGSKLFE DECDELLVES QELLQRVEIK LGRFQEFKK // ID A0A0D3CG53_BRAOL Unreviewed; 348 AA. AC A0A0D3CG53; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g081270.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g081270.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g081270.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g081270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013585333.1; XM_013729879.1. DR EnsemblPlants; Bo5g081270.1; Bo5g081270.1; Bo5g081270. DR GeneID; 106294321; -. DR Gramene; Bo5g081270.1; Bo5g081270.1; Bo5g081270. DR OMA; YFTDKAS; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR017392; AP2/ERF-transcript_factor. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR PIRSF; PIRSF038123; PTI6; 2. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 97 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 97 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39552 MW; 3656CF899CCDC6CA CRC64; MDSLKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVQQQNG HWGAQIYADH KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITVQEPDFQK SHTTEAVLNM IRDSSYPQKF GDYLIVRSQM VAIANVNIVG SKQSRGGGEE STKCFSCTEL FHKELTPSDV GKLNRLVIPK KHAVKHLPFI SDDQNEREEG ETGGAAEDVE VGFYDRAMRQ WKFRYCYWKS SQSFVFTRGW NGFVKEKNLK EKDVIVFYTC DVPSNFKTLE GQSNKFLMID VDYFTDKASV EPKEVNKMVH NVSEREMKTE NFFGTKVEEE TKSEVSKGGF MLFGVRIQ // ID A0A0D3CIN2_BRAOL Unreviewed; 346 AA. AC A0A0D3CIN2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g116790.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g116790.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g116790.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g116790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013587606.1; XM_013732152.1. DR EnsemblPlants; Bo5g116790.1; Bo5g116790.1; Bo5g116790. DR GeneID; 106296097; -. DR Gramene; Bo5g116790.1; Bo5g116790.1; Bo5g116790. DR OMA; CILQFDE; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 39586 MW; C240AA134E2D6E96 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSSAL MDTAHTHLKR ARLFEDLEDE DAAEVVYPSS SVYPSSQQHP EVTVAAIKGY ASPAIQSFFA GPPVKAEEAT PTPKVTKKRG RKKKNAVPEE VNSSAPRDDD PESRSKFYES ASARKRTVTA EERERAINAA KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA GRAKFSQGWY EFTLENNLGE GDVCVFELLR TRDFVLKVTA YRVNAI // ID A0A0D3CJ47_BRAOL Unreviewed; 391 AA. AC A0A0D3CJ47; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g121410.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g121410.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g121410.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g121410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013583600.1; XM_013728146.1. DR RefSeq; XP_013583601.1; XM_013728147.1. DR EnsemblPlants; Bo5g121410.1; Bo5g121410.1; Bo5g121410. DR GeneID; 106292537; -. DR Gramene; Bo5g121410.1; Bo5g121410.1; Bo5g121410. DR OMA; VHETQSK; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 226 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 354 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 226 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 354 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44555 MW; 866362F727D4887A CRC64; MKRKKLPERE EVHETQSKKS SFSKSLSPGQ NWKSKSMRII PEEILRSIPK AFEHRVVFTV PWNNSWQLWL QGDKNCLFMI KEDWDEFVDD NLLASDDTLH FTHQGTMYFQ VRIFKKDGKE IISAPLEVEP PHNSHQETTP ASASGGGRKS FAHVENPERY LFNPSNPYFE KTLTKTNTAL YVSTPVVKKY ELEFGPRNSS MHFLLPDGNK MEGFNKIYSG LHAFLGWADV CQKYNLKQGD TVVCEFELSG RVVTAVRVHF VTASNSASGR QTSRGRQSFD HVENPERYLL NPNNPYFEKT LTKTNSVLHV SPPVIKKYGL EFGPHSSSMD FLLPDGSKME GFTKSYCGLY GFLGWAAVCQ KYNLKPGDTV VCEFELSRGV VSAVRVHFVN E // ID A0A0D3CJG1_BRAOL Unreviewed; 259 AA. AC A0A0D3CJG1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g123540.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g123540.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g123540.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g123540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo5g123540.1; Bo5g123540.1; Bo5g123540. DR Gramene; Bo5g123540.1; Bo5g123540.1; Bo5g123540. DR OMA; HHSEMRC; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 158 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 259 AA; 30020 MW; 26E929FF64CDA796 CRC64; MVIRAERGSS WEVDISKNPR FYYMEKSGWN QFVSDNALGD NEFITFTHKG SMSFNVNIYG KNGKEIVAPR KPPTTTPLSG VKKEEGERSY KDVKKEEERC ESMEGVELEE ATKKKKKSKK VLSYVEVGES SRGSRKKKAE KLKTLKKKKK IKTVKKGVPE FEITIRKSYL KFMLLPRVFE EEHIPGESME YTIHHSEMRC SWNVLCLVRE NRTVFSSGWS RLAREFPLKV GDRCTFKLIK PTEFVLITKK SRKETTVIG // ID A0A0D3CL50_BRAOL Unreviewed; 305 AA. AC A0A0D3CL50; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g136360.1}; DE Flags: Fragment; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g136360.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g136360.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g136360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo5g136360.1; Bo5g136360.1; Bo5g136360. DR Gramene; Bo5g136360.1; Bo5g136360.1; Bo5g136360. DR OMA; SSHNHHN; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 305 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5002259507. FT DOMAIN 72 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EnsemblPlants:Bo5g136360.1}. SQ SEQUENCE 305 AA; 34531 MW; 9816DC2E9C21D705 CRC64; FHNFHFFCYL RIILYLVPLP ITLSPPNICT SSLFSLSLFL TLQENNHKMS VNHYSNTLSS HNHHNDHKES LFEKSLTPSD VGKLNRLVIP KQHAERYLPL NNCGGGDDVT ESTEKGVLLS FEDESGKSWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLNAG DVVLFQRHRF DIHRLFIGWR RRGETSSSSA VSAVSQDPRA NTTAFWNGLT TPYRQVHAST SSYPNNIHQG YSHYGPVAET PTVVAGSSRT VRLFGVNLEC HSDVVEPPPC PDAYNGQHIY YYSTPHPMNI SFAGEAMEQV GDGRG // ID A0A0D3CLA2_BRAOL Unreviewed; 340 AA. AC A0A0D3CLA2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g136880.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g136880.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g136880.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g136880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo5g136880.1; Bo5g136880.1; Bo5g136880. DR Gramene; Bo5g136880.1; Bo5g136880.1; Bo5g136880. DR OMA; KEDTATH; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 120 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 120 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38834 MW; 47A4FF6749B4FEBC CRC64; MTNASASSPI NPHFFKPLLP KHSHDFLLKL TSDASDKTWE VKMDGRRLTR GWQNFANGHG VRVGDIVIFR RDGDLLFHVT SFGPSCCQIL YDDDVIQVSS DSEKYHQDTR EEGSPSDNAC FVARVTASNL SRDMLFFPRD FSRSNGLMDR ECEIILLNEY GKPWKLFLRN HKTHGGGVYI RTGWRRFCRQ NRKRVNSLLT FKLVQAGTKP VLQLCSSMYN RDSLRGSSSS SSSSRSQERF LTLTLTTYSL RKSKLCLPGK FVWLNGIENA RKITLVDRYG VKRTTSLRPD NKYGAMRMGK GWREFCKANG VKAGESFTLE LIKEEEINTS THLLKFCTEV // ID A0A0D3CLA3_BRAOL Unreviewed; 348 AA. AC A0A0D3CLA3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g136890.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g136890.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g136890.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g136890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo5g136890.1; Bo5g136890.1; Bo5g136890. DR Gramene; Bo5g136890.1; Bo5g136890.1; Bo5g136890. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 176 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 176 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 41 68 {ECO:0000256|SAM:Coils}. FT COILED 107 141 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 348 AA; 40173 MW; 3598542D40A93878 CRC64; MKLGAEFWSN NYDLTCFVKK KEEETAKQKT PEKKVEGNQQ EEKIETREKG LEEKATEIET EMEEGQINEG WKNVSGGKAS RSPRMQELKY GQVKIATPSM FEALSNIGEN GEEIEEDKEK VEDWEKEMVD SEESGKEEEK DNMEDMRKYG NKVVKVLEIG GRQQLPRQSK TRLKFLPRGF SRSNGLMNRE GEIFLLNEYG KPWTALLSYY KKTGDVYLRR GWRNFCHENQ KRANDLLTFK LVQEGTKPVL QLCSSMYNRG SSSTSEDRFL TLTLTHYNFK KCKLCLPATF LKANGIKSAR KITLVDRVER EFCEANGVKA GESFKLELIE EEEEDTAATH LLKFCTKV // ID A0A0D3CLA4_BRAOL Unreviewed; 146 AA. AC A0A0D3CLA4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo5g136900.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g136900.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo5g136900.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo5g136900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo5g136900.1; Bo5g136900.1; Bo5g136900. DR Gramene; Bo5g136900.1; Bo5g136900.1; Bo5g136900. DR OMA; TNEGNAN; -. DR Proteomes; UP000032141; Chromosome C5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16574 MW; 25F21310032523D5 CRC64; MTFYSKHIKG TTNEGNANAV VKLRSDASDL TWEVKMDGRR LTQGWQEFTT SHDLRVGDIV IFRHDGDLLF HVTTFGPSCC EIQYDDDVFQ ISSDSDSDSE MNQETREAVS PSDKSCFVAR VTPANLRKNT LVNFSLLHLM YFSIKP // ID A0A0D3CPS4_BRAOL Unreviewed; 339 AA. AC A0A0D3CPS4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g022280.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g022280.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g022280.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g022280.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo6g022280.1; Bo6g022280.1; Bo6g022280. DR Gramene; Bo6g022280.1; Bo6g022280.1; Bo6g022280. DR OMA; HEPDFQE; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 108 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 108 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39275 MW; A618AD92CF3BF110 CRC64; MFLVSSAIPM DVAKSETLNT NDSYLPVKKR MRLNEPPTTD KALVSASDNT KYKGVVQHQN GHWGAQIYVD HKRIWLGTFK SAAEAAMSYD SASIKLRTFD ANSQRNFPWS DLTVHEPVFQ KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ IVSKQNRRDE ESNKQFSCTQ LFQKELTASD VGKLNRLVIP KKYAVKYLPF ISEREEGEIV EDVEVVFYDR EMRQWKFRYC YWSSSQSFVL TRGWIGFVKE KRLKEKDVIT FYTCDVPTLE GQSKKFLMID VHYFSDNDSA VTDEEVNKTV HNSFDDVMKP EINSKLGGEE EAKPEEIKGG FMLFGVRIQ // ID A0A0D3CPU1_BRAOL Unreviewed; 333 AA. AC A0A0D3CPU1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g022450.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g022450.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g022450.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g022450.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013591041.1; XM_013735587.1. DR EnsemblPlants; Bo6g022450.1; Bo6g022450.1; Bo6g022450. DR GeneID; 106299505; -. DR Gramene; Bo6g022450.1; Bo6g022450.1; Bo6g022450. DR OMA; NEHTTED; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 102 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 102 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 38021 MW; 1FBBEFA17FDDEBF4 CRC64; MNTEDAKTET PTVSSGCFLP LKKRVKLLSN PPNSALEVVV SGNAKYKGVV QQPTGHWGAQ IYADHKRIWL GTFRSAAEAA AAYDSASIKI RSYDANMHRN FPWSEYTVHE PAFQNEHTTE DVLSMIKDGT YQRKYREFFK KVQSKIVGGY NMVGSKEDQE SKNCFSCTEL FRKELTPSDV GKLNRLVIPK KYAVRYLPLL RDDRKERGEG EIGEDVEVVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNGF VKEKSLKEKD VIVFYTCDVP TLEGQSKKFL MIDVQCSSDE GSAVCDEEVN ETVHNSSEGG VKTEETKSVE NKGGFMLFGV RIQ // ID A0A0D3CPU2_BRAOL Unreviewed; 343 AA. AC A0A0D3CPU2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g022460.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g022460.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g022460.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g022460.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013591163.1; XM_013735709.1. DR EnsemblPlants; Bo6g022460.1; Bo6g022460.1; Bo6g022460. DR GeneID; 106299650; -. DR Gramene; Bo6g022460.1; Bo6g022460.1; Bo6g022460. DR OMA; MAFDSAS; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 180 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 180 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 39626 MW; 06BE6B1F306BBF0F CRC64; MFLLSSVIPM DIAKSKASNT SDSYLPPKKR MRLSEPPTET TLVSAAIKKG SFSDNIKYKG VVQQPNSRWG AQIYVDHKRI WLGTFSSAAE AAMAFDSASI KLRSFDTISE RNFPWSDLTV QEPVFQNGYT REAVLNMIKD GSYQREFIDF LKNRSQVVVG LKQNRRDEEP SKCFSSRQLF QKELTASDVG KLNRLVIPKK YAVKYLPFIS EREEGEIVED VEVVFYDREM RRWTFTYCYW TSSKSFVFTR GWIGFVREKS LKEKDVITLY TCDVPTLEGQ SKKFSMIDIH RFSDNDSVAT DEEVNKTVHD ISDDVMKPEK FFNSKFGEEE NRGGFMLFGV RIQ // ID A0A0D3CPX5_BRAOL Unreviewed; 481 AA. AC A0A0D3CPX5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g024770.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g024770.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g024770.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g024770.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo6g024770.1; Bo6g024770.1; Bo6g024770. DR Gramene; Bo6g024770.1; Bo6g024770.1; Bo6g024770. DR OMA; MVDFANI; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 187 244 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 319 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 187 244 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 319 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 481 AA; 54418 MW; B90240DA83938061 CRC64; MSLAQGTTFV LQKETVPRQK LSATISQGKR VSEAIDEFIA SNDDYELLEG NWQMIWSSQI YADSWLENAA NGLMGRQIIE KDGRIKFEVN IIAAFRFSMK GKFLKPGGST YELKMDDAAI IGGLFGYPIE LTNNIELQVL NGGMNSLNEA KTMTETSGSS NSVLCLANPM EQPHVPTTTR SVLSDTKYKG VVQQPNGHWG AQIYAEHRRI WLGTFKSAAE AAASYDSASI KLRGIDANSY RNFPWCEITT HEPAFQANYT TEAVLNMIKD CSYQHKFMEY LRRRSQMVDF ANINIVAAAS KQSRAGRGVQ DPFSCTPLFS KELTPSDVGK LNRLVIPKKH AVKHLPFISD VQKEREEGEI GGALDDVEVV FYDRAMRQWK FRYCYWRSSQ SFVFTRGWNG FVREKRLKEK DVIVFYHCDV PTNVKTLQGQ SNSFLMIDVD YFTETGSAPP KEVDKMVHNT SEEEMKTETK GGFMLFGVRI Q // ID A0A0D3CTK8_BRAOL Unreviewed; 281 AA. AC A0A0D3CTK8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g067300.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g067300.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g067300.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g067300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo6g067300.1; Bo6g067300.1; Bo6g067300. DR Gramene; Bo6g067300.1; Bo6g067300.1; Bo6g067300. DR OMA; VECELLH; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 31725 MW; 01A4B8FE7772E20B CRC64; MSESEEDVDL PRFFKVFLSE TASESMAIPM SFNEHLEDPL PQTAKLQGIG GGVWTVSFKK IRDCAYFTSG WSKFAEDHEL KDGEFLTFAY DGSHTFEVSV FGRSGCKEIR AEVETVEFSD ANSDKEEEED SSVVADSNEE EDEGDDDSSF IAGEDDEVSQ SLSHVDSDDT VSNAEGFSNL EVESNPCFTT TLKNRIYELL IPANVVKEHG LTFCDRVKYI DGEGIMHGAK GKWSDDRICF KGWDRICRRN RLKERDTVHC EMLHIRKKVH TIKITVTRGR G // ID A0A0D3CVA5_BRAOL Unreviewed; 278 AA. AC A0A0D3CVA5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g079210.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g079210.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g079210.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g079210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo6g079210.1; Bo6g079210.1; Bo6g079210. DR Gramene; Bo6g079210.1; Bo6g079210.1; Bo6g079210. DR OMA; HPHQFAG; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31549 MW; C1408CEC00E2E4B1 CRC64; MNLEEEKPVE KASSMEREHM FEKVVTPSDV GKLNRLVIPK QHAERYFPLD NSDNNKGLLL NFEDRTGNSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFQRDP GNKEKLFIDW RRRPKIPDHP HQFAGAMFPK FYSFSHPQNL YHRYQQDLGI GYYVRSMERN DPTAVIESVP VIMQRRAAHV AAIPSSRGEK RLRLFGVDME CGGGGSVNST EEESSSSGGG GGVSMASVGS LLQLRLVSSD DESLVAMEAA SVDEDHHLFT KKGNFRFG // ID A0A0D3CW32_BRAOL Unreviewed; 543 AA. AC A0A0D3CW32; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g081980.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g081980.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g081980.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013587957.1; XM_013732503.1. DR RefSeq; XP_013587958.1; XM_013732504.1. DR EnsemblPlants; Bo6g081980.1; Bo6g081980.1; Bo6g081980. DR GeneID; 106296377; -. DR Gramene; Bo6g081980.1; Bo6g081980.1; Bo6g081980. DR OMA; AGDINHR; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 543 AA; 59728 MW; 52026202CF948DE5 CRC64; MSPPPPATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSLSTA PVPCVVSAVE LLPDPITDEV FAHLALQPIS PEHFSPSNFS GFGSDDDENN NSNSKVVTFA KILTPSDANN GGGFSVPRYC ADSVFPPLDF HADPPVQKLF ITDIHGVVWD FRHIYRGTPR RHLLTTGWSK FVNGKKLIAG DSVVFMRKSV DEMFIGVRRA PNSNHGDEYY GGGKKGFRRI GMGKLTAEAV SEAINKAVQG YPFEVVYYPT AGWSDFVVRA EDVEVSMAGY WSPGTRVKMA METEDSSRVT WFQGVVSSRF QETGLWKQLQ ITWDEPEILQ NLKRVNPWQV EVVANSSQLL AIYPPTKRLK HSNSASGFLS GEGGEMLYSG RGQQAVDPSP YLFSYTTFPA GMQGARHYEF GSFNSTGFIG ENTPQLCTNN FFNPLPGLRK ISTEMMNYGS PLSDDLSPNS NTTNLSSGNE QVGNRGHAVR VNSIQLFGQI INVQELTESG LAEGLYEEDG SKESSDNEVV NETQLSLTYA QGM // ID A0A0D3CX87_BRAOL Unreviewed; 330 AA. AC A0A0D3CX87; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g092960.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g092960.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g092960.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g092960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo6g092960.1; Bo6g092960.1; Bo6g092960. DR Gramene; Bo6g092960.1; Bo6g092960.1; Bo6g092960. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR006912; Harbinger_derived_prot. DR Pfam; PF02362; B3; 1. DR Pfam; PF04827; Plant_tran; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 240 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 240 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 37653 MW; F36F27B35FFA2546 CRC64; MQNTRGYIER DREGGHTRLV NDYFRENATY SAQFRRRFRM NKSLFMRIVL ALQENFVFFQ QRPDATGRLG HSPLQKYTAA TRLLAYGTGA DTVDEYLRLA ETSALLCLHN FTDGIIQLFG DKYLRRPTPD DLQRLLDIGE KQRFPGMIGS IDCMHWEWKN CPTAWKGQYA RGSGKPTIVL EAVASQDLWI WHTFFGPPGT LNDINVLDRS PLFDDILEGR APRYLPVGAT SSTALHKQCK ETILVNKEGN SWNVSLRFSE SAGKYYITRG WRKFCLDNRC EIGDLFAFNV VGDGKTTPLM CVCPERKECS EILSKYLSRT SGEFSLGGHS // ID A0A0D3CY88_BRAOL Unreviewed; 777 AA. AC A0A0D3CY88; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g099440.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g099440.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g099440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013592069.1; XM_013736615.1. DR RefSeq; XP_013592070.1; XM_013736616.1. DR EnsemblPlants; Bo6g099440.1; Bo6g099440.1; Bo6g099440. DR GeneID; 106300467; -. DR Gramene; Bo6g099440.1; Bo6g099440.1; Bo6g099440. DR OMA; VVEHTNN; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 676 760 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 777 AA; 87012 MW; 24585D023C6F95C4 CRC64; MNLSSSGFGH QSHEGEKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ PLTQEEQKDT FVPIELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT TFPMYPSLFP LRLKRPWHPG ASSFQDSRGD LTWLRGGAGE NGLLPLNYPS PNVFPWMQQR LDLLGTDQNQ QYQAMLAAGL QLNFGGGGGD PLRQQFVHLQ EPNHQYLQQQ SAPIIHNSDL QQHHQQQQMP RHLLQAQPQI LTENIPQQNM SQEVSNQAQQ PDRVWQHSDL LSPSDFTNKF TSAASNPVQQ QNLTLQGSGD SSSHLLNFSI TGQSEQLPTQ DWSLKHSHHP ETNYFSEPLS LGQAYGRASP SSLEPPPSTQ NLSLFGVDSD SGLFLPTTVP RFGGDTSSMP LADSGFQNNL QETTELAAHG VVEHTNNFVK VYKSGSVGRS LDISRFSSYN ELREELGKMF DIRGLLEDAF RSGWQLVFVD KEDDILLLGD DPWESFVNSV WYIKILSPDD VHKMGEHGSF PQNLTHF // ID A0A0D3D1F7_BRAOL Unreviewed; 557 AA. AC A0A0D3D1F7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g121520.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g121520.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g121520.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013590621.1; XM_013735167.1. DR EnsemblPlants; Bo6g121520.1; Bo6g121520.1; Bo6g121520. DR GeneID; 106299036; -. DR Gramene; Bo6g121520.1; Bo6g121520.1; Bo6g121520. DR OMA; IDPKIWR; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 557 AA; 60515 MW; ECAFFAEB103EC54E CRC64; MSPPSAIADV HRVIDPKIWR ACAGASVQIP ALFSRVYYYP QGHVEHCCPS SSAVTTSPIA CVVSSIDLLA DPITDEVFAH LALLPVAAAA AAAQDQFQFP PQSRFEEDGE SEKVVTFAKV LTASDANNGG GFSVPRYCAD SVFPPLDFQA DPPVQKLFIT DVHGGVWDFR HIYRGTPRRH LLTTGWSKFV NSKKLICGDS VVFMRKSVHE MFIGVRRAPI SNKSGGGSYY GDEYIAGGYY YGGGGGGAKK EDGGEKFRRV GMGKLTAEAV SEAIGKASRG LPFEVVYYPT AGWSEFVVRA EDVEASTNVY WTPGTRVKMA METEDSSRIT WFQGIVSATF QETWKQLQIT WDEPEILQNL KRVNPWQVEV VTASSTQLHA TYPPPTKRPK YPHASSGVLS GEEGEMIYYG RGQQAMDPIP YGYTYTTVPA GMQGARHYEF GSYNNSTGFI GENAHPEFNF FSPLPGLGRV STQVMSFGSP PSDDLSPNSN TTNVSSGNDA AGNNRCISFQ LFGKVINVQE PAESGVAESS LCEEDGSKES SDNEVPNEAQ LLGRGGR // ID A0A0D3D1V6_BRAOL Unreviewed; 261 AA. AC A0A0D3D1V6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g124000.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g124000.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo6g124000.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo6g124000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013588441.1; XM_013732987.1. DR EnsemblPlants; Bo6g124000.1; Bo6g124000.1; Bo6g124000. DR GeneID; 106296760; -. DR Gramene; Bo6g124000.1; Bo6g124000.1; Bo6g124000. DR OMA; HLPKHDE; -. DR Proteomes; UP000032141; Chromosome C6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 29794 MW; B67A652A1C6FB556 CRC64; MVESKYEQIR LKRVEENKKR MIELNLNKLS HSLRVSSPSP KPSPAKARTP RTPVDSSEVR RSSRAKNPPP SYKEFGLEPL ERPRRSYQRR DLLNRVYASD DARVYAIDRA EALQSSLEPE FPSFIKPMLQ SHVTGGFWLG LPRSFCHTHL PKYDEMITLV DENEDEAVTK YLADKNGLSG GWRGFAIDHQ LVDGDAVVFH LINPTTFKVY IIRVNDESNN GLGGSNEKEL VIKPNKNQEE KNVSEVPPLS NSGKRKRRGR K // ID A0A0D3D698_BRAOL Unreviewed; 349 AA. AC A0A0D3D698; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g048240.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g048240.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g048240.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g048240.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013597236.1; XM_013741782.1. DR EnsemblPlants; Bo7g048240.1; Bo7g048240.1; Bo7g048240. DR GeneID; 106305406; -. DR Gramene; Bo7g048240.1; Bo7g048240.1; Bo7g048240. DR OMA; PNDIMDL; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 165 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 40047 MW; 668D0D7FCA7784D8 CRC64; MDNFLPFSSS NANSVQELSM DLNKNRSHFS MAQPQHLLPP YSYVACPVLD QTGAMNHQPL HSSDAFPQIP VVQTGGEFGY LVCKPGVRQE RGGFLDPHST KMARINRKKA MIRSRNNSYL NSSSNELVDS RRQVALTMKN NAEIAARKDF YRFSSFDNKK LRVLLVKHLK NSDVGSLGRI VLPKREAEGN LPELSDKEGM VLQMRDVDSV QSWSFKYKYW SNNKSRMYVL ENTGEFVKKN GVLMGDYLTI YEDESKNLYF SIRKHPHKQN DGREDESMEV IEMNFYEDIM FDYIPNGEDD SIAMLLGNLN EHYPYPNDIM DLTVDLDQHQ QATSSSPPAD HMSSNDFLW // ID A0A0D3D6U3_BRAOL Unreviewed; 375 AA. AC A0A0D3D6U3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g054150.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g054150.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g054150.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g054150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g054150.1; Bo7g054150.1; Bo7g054150. DR Gramene; Bo7g054150.1; Bo7g054150.1; Bo7g054150. DR OMA; VFLQNGC; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 156 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 309 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 156 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 309 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 42137 MW; 38436BE7B00AD9C2 CRC64; MVDEFLYSPI KPHFFQPLLP GFHTHLNIPV AFFSKHVVGR HDHVKIAKLR TYASDKNWKV KMDGSKLTDG WEDFAVAHDL RVGDMIVFRH EGEMVFHVTA LGPSCCEIQY TSTHNINDDS HDETNNIVTG NSSREKRKRV KKNPKPVPQA SLHSSCYVGS VSNSSLKHNK LYLGKEFVAA NGLNKGCSEI VLKNERGGRW TLPLKHYKSI NHTYLGPGWT PFCQVNGIKA EDSFMFKLVR TGDKPVLCLC PEESSHRDKT PLECLEDSDD VNPLSSSTCS GDKSSKSKES KEESLGDKRA SSSYSEDRFL TLTLTQKAVK RYQLFLPMGF AKRNGINKPG KITLLGQDGV KQEVALMQNK RTGQNANWKR LESVP // ID A0A0D3D6U4_BRAOL Unreviewed; 383 AA. AC A0A0D3D6U4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g054160.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g054160.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g054160.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g054160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g054160.1; Bo7g054160.1; Bo7g054160. DR Gramene; Bo7g054160.1; Bo7g054160.1; Bo7g054160. DR OMA; HEGELEF; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 383 AA; 42885 MW; 636C1CFADE526FE9 CRC64; MEDLSLHSPV KPHFFQPLLP GFHTHLTIPV AFFLKHVQGR NDQIKIAKLT TDASDNTWTV RMDGLKLTHG WEDFALAHDL RVGDMIVFRH EGELEFHVTA LGPSCCEIQY TSSHNINHNQ TNNIDACSLS DHSRFVAKVS SSNLRLDRLY LPMSFARTNG LDKMSGEEII LLNEEGRSWS LKLKHDKSDM HTFIRPGWRR FCAENGMSHG HYTLKLVRNS GPPVIKLCGQ VHNRPKQVPV VSSLHHSCFV GSVTSNSLKT DKLYLGKKFV SENGLDRGCS EVVLKNEWGG RWSLALRCYE SAKQTYLGPG WRTFCQVNGI KVGDSFKFKL VGTGDNPVLL LCTRKTPLEC PEESSGSDTS SGDDSSKSQE SEEESLGDKN ISQ // ID A0A0D3D7Z1_BRAOL Unreviewed; 860 AA. AC A0A0D3D7Z1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g062090.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g062090.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g062090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013599005.1; XM_013743551.1. DR RefSeq; XP_013599006.1; XM_013743552.1. DR EnsemblPlants; Bo7g062090.1; Bo7g062090.1; Bo7g062090. DR GeneID; 106306798; -. DR Gramene; Bo7g062090.1; Bo7g062090.1; Bo7g062090. DR OMA; DYDPMRW; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 751 835 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 860 AA; 95381 MW; D1B5B8BFBF496625 CRC64; MMASLACVED KMKTNGLVNG GTTPTTSQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP LVSLPQVGSL VYYFPQGHSE QVAVSTRRSA TSQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVFPV PEFGLLRGSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA CPAEFVIPIA KYRKAICGSQ LSVSMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGETEWGSLI KRPFIRVSDS TNGILPYASF PNMASEQLMR MMMRPHNNNN QNATTSFMSE MQQNVLMGQG GLLGDMKMQQ QPMVMNPENK LTVNPSASNT SGQEQNLPTQ SMHAHSISEK PTLSGCSSGR LSHGNEQQSM EQANQGCNEE KVNELMQKPV ALSPCPDISQ QIYPPTNGFS FLETEELTSQ VSSFQSLAGS YKQPLMDSSD VALPDTTNSS LFHDVWDNQL NGLKFDQFSP LMQQDLYGNN STNSNILDPP PPLSNTVLDD FCAIKETDFQ MIGNNNTSFT QDVQSQITSA SFADNSGGTG TSSSNVDFDD SSLLQNSKGS WQQKLATPRV RTYTKVQKTG SVGRSIDVTS FRDYQELKSA IECMFGLEGL LTRPQSSGWK LVYVDYESDV LLVGDDPWEE FVGCVKCIRI LSPTEVQQMS EEGMKLLSSA CINDLKTSVP // ID A0A0D3D8A5_BRAOL Unreviewed; 327 AA. AC A0A0D3D8A5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g064220.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g064220.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g064220.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g064220.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g064220.1; Bo7g064220.1; Bo7g064220. DR Gramene; Bo7g064220.1; Bo7g064220.1; Bo7g064220. DR OMA; SHESWLC; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37683 MW; AEA2892213D4FA70 CRC64; MVETSEKTSS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKRVVLVDEI GRLWDVETKT GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR FRVSVEKEPV IVKPVGISIK PEPWEDCGKR VMQNRKRVLV REEASVLGDI EPGHRRNTRK KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRNIAV GSLRLLEIPT TFLKANGIEL EEGQDIELCD ENGKKWPLKI EKHGRGYIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT CSQILVRIFR GTLLTTAAKS GYHVLSM // ID A0A0D3D8M7_BRAOL Unreviewed; 163 AA. AC A0A0D3D8M7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g065440.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g065440.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g065440.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g065440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g065440.1; Bo7g065440.1; Bo7g065440. DR Gramene; Bo7g065440.1; Bo7g065440.1; Bo7g065440. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 163 AA; 18692 MW; 657B271AC4757C16 CRC64; MVFHVTPFGP RSCEIQYTHP HIIKEEADTD DAPSFSFDYY FLAEVTASNL KEDKLYLPVE ATTSTALNKK CQEILLVNKE ENSWTVSLRF SESDGMYYIR RGWRKFCLDN RCAIGDLFVF NVVGDGKTTP LMCVCPERKE CSELLIKHLN RKNGHIASTS RVI // ID A0A0D3D8S9_BRAOL Unreviewed; 245 AA. AC A0A0D3D8S9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g066950.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g066950.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g066950.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g066950.1; Bo7g066950.1; Bo7g066950. DR Gramene; Bo7g066950.1; Bo7g066950.1; Bo7g066950. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 58 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 58 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EnsemblPlants:Bo7g066950.1}. SQ SEQUENCE 245 AA; 28448 MW; 5A6987F484AFF13E CRC64; LIINLYFLEN NQLGTPQRHL FTSGWNDFAK RKDLDVGDSF VFLRGENGES RVGIRKAAIH QQHNKPSSLI SKQSMHHVIV ATALNAVKRK CMFVVFYKPR SSQFLVNFDK FIDGVNKKFS IGSRFLMKFE GRDFNEIRYN EMKLQQFQDL IKYLHGRSSL LIHSSNILKS VFRKNKRQRE IHDFGSNMWV PTLTQGQEIG QSSIQSLMSY SFPTMSKPNY NEQMVQAVKE TPTTTATTRF VWKVP // ID A0A0D3D8X3_BRAOL Unreviewed; 543 AA. AC A0A0D3D8X3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g067390.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g067390.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g067390.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g067390.1; Bo7g067390.1; Bo7g067390. DR Gramene; Bo7g067390.1; Bo7g067390.1; Bo7g067390. DR OMA; EINDFGQ; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 446 528 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 110 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 543 AA; 62130 MW; 9EE31C860D8DC622 CRC64; MASDQIMHVQ PESLATDGTN NYLYNQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPKP ENNIQNINYF TKVLSASDTN KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWNFKH TLRGTPQRHL FTSGWNEFAK GKDLVVGDCF VFLRGENGES RVGIRKSAHH QQHNIPSPVI SKQSMHHGVV ATALNAIERK CMFVVFYKPR SSQFLVNFEK FIDGVNRKFS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS THWKNSEWRS LEVQWDEAAI ISRPDKVSPW EIEPLTHSSN IPKSVFLKNK RQSEINDFGQ EIGQTSIQSS MSYSFPSMSK PNYNEQMVQA MKETSTTTEA ASYRLFGVDL TFPAKTKDPV QPTHSYKKSK ISKIFEEEKV DQIQTKTHTK VCMEGAAERT MDLTIFDGYN QLIDELERLF DIKDKLHMHN QWKIVFINAD GNMMLLGDDP WPKFCNTAKE IFIYSEHDAK RGNADNKFAE GDP // ID A0A0D3DB34_BRAOL Unreviewed; 314 AA. AC A0A0D3DB34; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g083910.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g083910.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g083910.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g083910.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013597284.1; XM_013741830.1. DR EnsemblPlants; Bo7g083910.1; Bo7g083910.1; Bo7g083910. DR GeneID; 106305465; -. DR Gramene; Bo7g083910.1; Bo7g083910.1; Bo7g083910. DR OMA; VHRKKRM; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 35484 MW; F6C2D47F8DFC5177 CRC64; MGEAGYAHDV ETKVSALMAS VDHLPMFGSG SGHDNGYLSA SVPLLGVNWK KRRMPRQRRS SSSFNLLSFP TLPPSSHVPT HLPARKIDTG KLRFLFQKEL KNSDVSSLRR MILPKKAAEA HLPALEYKEG IPLEMEDLDG LHVWTFKYRF WPNNNSRMYV LENTGDFVST HCVQPGDFIM FYQYLDSCNY VIQAKKAYEE EEDITNVEED DVYTNLTRIE NTVLNDLPLP DYNQHYNNNN NNEKCSYVYP AFDDVTATTT NAPFVYDTTA LSSNDTPLDY LGGPATTTST NSYYSELGPF EGFGSVENIS LDDF // ID A0A0D3DCU0_BRAOL Unreviewed; 649 AA. AC A0A0D3DCU0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g095910.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g095910.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g095910.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g095910.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. C5-methyltransferase family. CC {ECO:0000256|PROSITE-ProRule:PRU01016}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g095910.1; Bo7g095910.1; Bo7g095910. DR Gramene; Bo7g095910.1; Bo7g095910.1; Bo7g095910. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR001525; C5_MeTfrase. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02362; B3; 1. DR Pfam; PF00145; DNA_methylase; 1. DR PRINTS; PR00105; C5METTRFRASE. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF53335; SSF53335; 2. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51679; SAM_MT_C5; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Methyltransferase {ECO:0000256|PROSITE-ProRule:PRU01016}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW S-adenosyl-L-methionine {ECO:0000256|PROSITE-ProRule:PRU01016}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transferase {ECO:0000256|PROSITE-ProRule:PRU01016}. FT DOMAIN 413 491 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 413 491 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ACT_SITE 84 84 {ECO:0000256|PROSITE-ProRule:PRU01016}. SQ SEQUENCE 649 AA; 73517 MW; EED9B12AA954842A CRC64; MAERVEEKPW RVLEFYSGIG GMRYSLMASG VVAQVVEAFE INDVANDVYQ HNFGHRPHQG NIQSLTAGDL DRYSADAWLL SPPCQPYTRQ VLWLGLQKHS GDARASSFLK ILELIPHTST PPRMLFVENV VGFETSDTHM EMIDTLTKSD YVTQEFILSP LQFGVPYSRP RYFCLAKRKP LSFQSPHNNN KLLWSPGPLY GRDDQVEFDK CQAEEGSENL LQSCEPVEKF LDLTVVQVNG EPSSFDESEN GSRDCDGQEK DDPVSESVHQ YLVPLSLIER WGNAMDIVYP DSKRCCCFTK SYYRYVKGTG SLLATVQPKV KGKESCLKEQ RLRYFTPREI CNAWKQFKCS SRGSSSSVSI QFFSRLDCGI KRAASDSRPM MDNVSKPRFC KSLSTGETWS SKSMVALFSI ERIIPEEFVR SAPVAFEHRV VFSVRWGNSW QLWLQRDKNG LFMEEEDWDE FVSDNFLGPN DVLLFIHVDT MFIEVQIYKQ DSYHLKEITS APLQTDPQAE VVTPLPQTSP PETPAPAPAS TSGARQADAL VNNPEQYLSN PSNPFFVKKL GKKIDVLYVS HLVTERYGLQ FGPHNSPMFY ILPNEKIEAN TKIYGGCACF NGWAAICRKY KLKQGDAVVC ELERSGGVVT AVRLHFPNE // ID A0A0D3DF15_BRAOL Unreviewed; 1153 AA. AC A0A0D3DF15; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g106630.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g106630.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g106630.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g106630.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013597557.1; XM_013742103.1. DR EnsemblPlants; Bo7g106630.1; Bo7g106630.1; Bo7g106630. DR GeneID; 106305739; -. DR Gramene; Bo7g106630.1; Bo7g106630.1; Bo7g106630. DR OMA; TIAREIF; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.10140; -; 1. DR Gene3D; 3.80.10.10; -; 2. DR Gene3D; 4.10.1000.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR011713; Leu-rich_rpt_3. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000157; TIR_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR000571; Znf_CCCH. DR Pfam; PF02362; B3; 1. DR Pfam; PF07725; LRR_3; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF01582; TIR; 1. DR Pfam; PF00642; zf-CCCH; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00255; TIR; 1. DR SMART; SM00356; ZnF_C3H1; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52200; SSF52200; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF90229; SSF90229; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50103; ZF_C3H1; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Leucine-rich repeat {ECO:0000256|SAAS:SAAS00492074}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Repeat {ECO:0000256|SAAS:SAAS00492321}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}. FT DOMAIN 46 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 954 982 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DOMAIN 998 1026 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DNA_BIND 46 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 954 982 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. FT ZN_FING 998 1026 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. SQ SEQUENCE 1153 AA; 129340 MW; 119A465A3E5CB004 CRC64; MEILFEKYLT TADLSWLNIF LFGANEEVVE YFGLATVFAR GAEMILRVQD EEGKPWEFGF LDVNIQFYQL TNGWSNYVKE KQLGVGDIVF LQRIFTDSSR LFIGFSRREA ALDGTSSDKL KEVNSPLPLR SHVHSVTEFD PVLVFSCAAN QESGERYFIS YISTELCLRG FTPLIYDLTR GTLTGCLELP HRSRVGIIIF SNNYASSRQC QDNFVAIMDH SKANSLVLLP VFFKVKVTDI RGQSGSFGRA FSQLENSIQA SQVPTFTFID KHQYMKGGEV ILAKNIVSNV CLLLSSENNM KLRGRLQMNS VLSLLYCSQS SAPHIVGLWG MAGIGKTTIA REIFRTQADR YDVCYFLPDF HIACQMRGLS HLRDEFFSKI YGEEKVTVDA CDTKLSFLRD RFLSKKVLVV LDGVSSARDA EFLVGGFGWF SGGHTLILTS RNRQVLIQCT AKEIYEIQKL SEHESLHVCS QFAAVQNWKE RTSLVSELVN YASGIPLALR ALGSSLQNNC IVGEKQHLKT LRQHPLVEIQ DAFKRSFDVL DGNEKHIFLD LACFFRGENK DYVVSILDAC GFFTDLGIYG LIDESLISLV GNRIEMPNIF QDTGRFVVCQ ENNETGKRSR LLDPTDIVDV LTNNSGTEAI EGIFLDASGL TFELSTTAFE KMYRLRLLKL YCPTSENHCK VSLPQGLYSL PDELRLLHWE RYPLGSLPRN FNPKNIVELN MPYSNMTRLW KGTKNLERLK RIILSHSRQL TKFPRLSKAK NLELIDLEGC TSLVKVNSSI LHHQKLTFLS LKDCSRLRSM PATVHLEALK VLNLSGCSEL EDLQDFSPNL SELYLAGTAI TEIPSSIGGL TRLVTLDLEN CNRLQHLPPE ISNLKAVVSL SAKRPASSKE SRDLASFVDV APPYRRYRLK RCIEAVILSL RKRKREKIFS IATNLSEVMR ASVSTWGFFG LPERPGEPEC AYYMKTGGCK FGSDCKFHHP RHRETHIPGL SSFSHPLRPG NPVCASYYYT GNCSSGATCM FDHPSSIPTH RDTSFVASLT PNLNPRGFSS SIGDSSSELV EAATKKRRIH HNTSPMVSET PLLNLRGFVS SIGDASSKLV EAPTSKVRIA ARKKQRIHKN TTSMASETPH LNPPELSSSP GALSSEHVKQ NKD // ID A0A0D3DFS6_BRAOL Unreviewed; 631 AA. AC A0A0D3DFS6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g109250.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g109250.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g109250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013595232.1; XM_013739778.1. DR EnsemblPlants; Bo7g109250.1; Bo7g109250.1; Bo7g109250. DR GeneID; 106303517; -. DR Gramene; Bo7g109250.1; Bo7g109250.1; Bo7g109250. DR OMA; CHRDANE; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 515 607 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 631 AA; 71227 MW; E8380EE73AB24FDE CRC64; MRTGEHMYGE LWKLCAGPVV DVPQAEERVF YFPQGHMEQL EASTQQDLNA VKPTKPLFDL PPKILCRVMD VRLQAEKDTD EVYAQIMLMP EGTVDEPVSP DPSPPESQRP KVHSFSKVLT ASDTSTHGGF SVLRKHATEC LPPLDMTQQT PTQELVAEDV HGYQWKFKHI FRGQPRRHLL TTGWSTFVTA KRLVAGDTFV FLRGENGELR VGVRRANRQQ TNMPSSVISS HSMHLGVLAT ACHATQTRSM FTVYYKPRTS QFIISLNKYL EAMSNKFAVG IRFKMRFEGE DSPERRFSGT VVGVKDCSTH WKDSNWRCLE VHWDEPASIS RPDKVSPWEI EPFVTSENVP HSVMPKNKRP RHFSEVSALD VGKTASNLWS SALTQSHEFA QSCIASQRNS PQQCYREATE DAKNSDWPAI PYSATLNNQM VFPVEQKKPE STASYRLFGI DLLSSFIPAT EEKTAPTLPI NITKPTPDSN SDPKSEVSKL SEEKKQEPAQ ASSKEVQSKE NSSARSRTKV QMQGVPVGRA VDLTVLNGYS ELIDDLEKLF DIEGELKSRN QLEIVFTDDE GDMMLVGDDP WPEFCNVVKR IFIWSKEEVK KMTPGNQLRK LLTEVDTTLT TTISKTENHS N // ID A0A0D3DGX2_BRAOL Unreviewed; 724 AA. AC A0A0D3DGX2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g114200.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g114200.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g114200.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g114200.1; Bo7g114200.1; Bo7g114200. DR Gramene; Bo7g114200.1; Bo7g114200.1; Bo7g114200. DR OMA; IIAKDMH; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 187 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 638 716 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 187 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EnsemblPlants:Bo7g114200.1}. SQ SEQUENCE 724 AA; 80341 MW; 53C0F9B0BB58350A CRC64; KPNLSPSYTR TLFISLCTAK VNSYPILKQK LSCRIFRFSR NQEKGFLEHN LQELVSDLLL LFKVLLHLKE MINVMDPMKS GSEKGLDPQL WHACAGGMVR MPPVNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLRLIP LKDDDHEYGD GQEGNGFESN SEKTPSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYNA EPPVQTILAK DVHGDVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFMRAESGD LCVGIRRAKR GGIGNGPDYS PGWNPIGGSC GYSSLLREDE SNSLRRSNCS LADRKGKVAA ESVIEAATLA LSGRGFEVVY YPRASTSEFC VKALDARAAM RIPWCSGMRF KMAFETEDSS RISWFMGTVS AVSVSDPIRW PNSPWRLLQV AWDEPDLLQN VKRVNPWLVE LVSNVHPIPL TSFSPPRKKM RLPQHPDYNN LINSIPVPSF PSNPLIRSNP LSSVLDNVPV GLQGARHNAH QYYGLSSSDL HHYYLNRPPP PPQPSALPLS QPLGLRNIDS RNEKGFCFLT MGTTPCNDDT ESKKSHIVLF GKLILPEEQI SEKGSTDTAN TSGGSKLSSS DEGSPCSNKA HDAAGLETGH CKVFMESDDV GRTLDLSVLG SYEELSRKLS DMFGIQKAEM LSSVLYRDAS GAIKYAGNEP FSEFLKTARR LTIVTEQGSE SVVV // ID A0A0D3DH83_BRAOL Unreviewed; 796 AA. AC A0A0D3DH83; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g115310.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g115310.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g115310.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g115310.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g115310.1; Bo7g115310.1; Bo7g115310. DR Gramene; Bo7g115310.1; Bo7g115310.1; Bo7g115310. DR OMA; ARTETEC; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 290 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 456 552 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 575 671 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 290 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 456 552 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 575 671 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 756 783 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 796 AA; 89659 MW; EAAA46C4661C2587 CRC64; MVNASLLSPA TPHFFQPLLS HSKSHLNIPA KFFSGHIEGK QEGKTVTLRS DASEKTWKVE MKGQRLTQGW KEFVEAHALR VGDFVVFRLE RDMLFNVTAL GSSYCEIQYT PSGSRRQEEE EESVGTEKEV EKNLTRFVTL TPTSSSFETG KQHLPANFTR GNGLIKPGKI IMVDKKGDEW VMELKVGKTN VSIMYMYIMS RNGWRIFCDV NEVRAGESLT LELIRGGESP MLKFCSEMEQ APFEAEACAH KRAKWSQEIR EKTTEEGEPS HRARASNKTN ANQENLQNKQ PCSVSDLLTE VKHSVMIPDS FVSNHLKGNI QSTKLKLTSD ASDRTWEVEL DGQRFARGWK HFSDHHCVRS DDVLSFRQDG DMVFHVTPFG RRFTQQIQFI SSTSEASDDD DEHNIFDDDV YDDEDIGDED VGYDDDATSE EELYPNKTLS KKRARTETEC SSENTYLVAH ATPSSLNRNH MYLPSKFARA NGLNNRQCEI DLRNEHGKSW TLDLTHHKST GQAFVRNGWT SFCKANGIKA ESFRRFKFVQ TGTKPVLQLC PNTEGDDEIE AEDCSEPASM NQNKIVALEL KPYMFKSGRV RVPASFGRAN GINEAGKITI VNKDGIEWKL HLGNMKGREL FYIRGLRNCF VANGIKKIGD SFTLEAIRGG PNPILKICSK EASCDGYKTP QPRMIQASRD EEEKETKVQK KARVSAVGGP SHRTRASNRS SAGPSNLQPK QPPQPCSTSD QVAKVKQSVV DALTDVRQFR SELEVKERNL EAALLEIDVL GEKIMGISKL FNINQV // ID A0A0D3DH86_BRAOL Unreviewed; 428 AA. AC A0A0D3DH86; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g115340.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g115340.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g115340.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g115340.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g115340.1; Bo7g115340.1; Bo7g115340. DR Gramene; Bo7g115340.1; Bo7g115340.1; Bo7g115340. DR OMA; HIEGKNE; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR003923; TFIID_30kDa. DR Pfam; PF02362; B3; 3. DR Pfam; PF03540; TFIID_30kDa; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 23 44 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 77 169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 208 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 332 428 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 208 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 332 428 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 428 AA; 49444 MW; BC28D0FF87E9902B CRC64; MIPDDLVDHY LAKNGFQCPD EGLVGISLQF YFILFVAYIF VYWFNRRIRL VAVATQKFVA DVASERKATN RGTAKAKQEA AKVEDISKDL RETIPVTFFS KHIEGKNEQR KAKLRSHASD KTWKVTIDGR RFTRGWKDFA TAHDLRIGDV IIFRHEGDMV FNVTPFGPSC CEIHYEQSHL IKEEEFDNND DDNENHCRTK SSFSFDYCFV AQVTASNLRL DTLDLPMEAE SSNALNKRCH EMIVVNKEGN SWTVSLRFRE SSGSYYIRGG WRRFCRDNRR KIGDLMVFNL VGDGKTSPMI CICPEEECSE LVRKAKRRSK WVASSSSRRN RFVTISLTRY NFRSSKLILP ATFMKINGIK RQNEIILMDK HGVRWVTKLV KDGSKYGKRG LGKGWKDFCE ANDVLKIGQP FLLELVWEDT LPVLKFCS // ID A0A0D3DHA8_BRAOL Unreviewed; 743 AA. AC A0A0D3DHA8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g115560.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g115560.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g115560.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g115560.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013592945.1; XM_013737491.1. DR EnsemblPlants; Bo7g115560.1; Bo7g115560.1; Bo7g115560. DR GeneID; 106301154; -. DR Gramene; Bo7g115560.1; Bo7g115560.1; Bo7g115560. DR OMA; MFHSKDS; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0016743; F:carboxyl- or carbamoyltransferase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.1370; -; 1. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 282 383 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 561 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 282 383 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 743 AA; 82443 MW; 63D5181A3BB24F94 CRC64; MESTKVCMNA QCGSTSTSGE WKRGWSMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELVDNGGVTC ITCAKKSGLF SMNVESNGRE FPTFASAEHV SSVLERTNLN HLLHFQRISP TQPFLQMKQE ESLLPARLEA LRHNTEKKES AQPNLSISLG PTLMTSQFHD VDDRSKTTPI FQLASRSRQL LPKPANSAPT TAPPMEPNGS LVSQIHVARP PPEGRGKTQL LPRYWPRITD QELQQLSGQY PHLSNSKIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTAAQM FKGSSEPNLN MFSNNLSSGC GDINWSKLDK SDDMSKDGLM LQPSLISARK RVRNIGTKSK RLLIDSVDVL ELRLTWEEAQ ELLRPPQSAK PSICTVEDHD FEEYDEPPVF GKRTVFVSRQ TGEQEQWVQC DACAKWRRLP VDTLLPPKWL CSDNVLDPSR SSCSAPDELT PREQDTLLRL SKEFKRRRLA SSNQEAASAL DTLANAAITT TGEQGETEVA ATTKHPRHRA GCSCIVCSQP PSGKGKHKPS CTCTVCEAVK RRFKTLMMRK RNRGETGQAS QQAQSDQCRE ETEAESIPAV ELPAAGGNID LNSDPASRVS MMSLLQAATF PLEVYLKQKG VPNTAGEQQS SEV // ID A0A0D3DHA9_BRAOL Unreviewed; 769 AA. AC A0A0D3DHA9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g115570.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g115570.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g115570.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g115570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013599014.1; XM_013743560.1. DR EnsemblPlants; Bo7g115570.1; Bo7g115570.1; Bo7g115570. DR GeneID; 106306806; -. DR Gramene; Bo7g115570.1; Bo7g115570.1; Bo7g115570. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0016743; F:carboxyl- or carbamoyltransferase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.1370; -; 1. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 282 383 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 561 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 282 383 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 769 AA; 85055 MW; A68080A7F4BD0101 CRC64; MESTKVCMNA QCGSTSTSGE WKRGWSMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELVDNGGVTC ITCAKKSGLF SMNVESNGRE FPTFASAEHV SSVLERTNLN HLLHFQRISP TQPFLQMKQE ESLLPARLEA LRHNTEKKES AQPNLSISLG PTLMTSQFHD VDDRSKTTPI FQLASRSRQL LPKPANSAPT TAPPMEPNGS LVSQIHVARP PPEGRGKTQL LPRYWPRITD QELQQLSGQY PHLSNSKIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTAAQM FKGSSEPNLN MFSNNLSSGC GDINWSKLDK SDDMSKDGLM LQPSLISARK RVRNIGTKSK RLLIDSVDVL ELRLTWEEAQ ELLRPPQSAK PSICTVEDHD FEEYDEPPVF GKRTVFVSRQ TGEQEQWVQC DACAKWRRLP VDTLLPPKWL CSDNVLDPSR SSCSAPDELT PREQDTLLRL SKEFKRRRLA SSNQEAASAL DTLANAAITT TGEQGETEVA ATTKHPRHRA GCSCIVCSQP PSGKGKHKPS CTCTVCEAVK RRFKTLMMRK RNRGETGQAS QQAQSDQCRE ETEAESIPAV ELPAAGGNID LNSDPASRVS MMSLLQAATF PLEVYLKQKG VPNTAGEQQS SDIVSTENGS SSAAQEHDRD TSGAPEALN // ID A0A0D3DHG1_BRAOL Unreviewed; 1186 AA. AC A0A0D3DHG1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g116090.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g116090.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g116090.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g116090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g116090.1; Bo7g116090.1; Bo7g116090. DR Gramene; Bo7g116090.1; Bo7g116090.1; Bo7g116090. DR OMA; VKSQLIC; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0010997; F:anaphase-promoting complex binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0097027; F:ubiquitin-protein transferase activator activity; IEA:InterPro. DR GO; GO:1904668; P:positive regulation of ubiquitin protein ligase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR024977; Apc4_WD40_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR033010; Cdc20/Fizzy. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011047; Quinoprotein_ADH-like_supfam. DR InterPro; IPR007378; Tic22-like. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR InterPro; IPR001680; WD40_repeat. DR InterPro; IPR019775; WD40_repeat_CS. DR InterPro; IPR017986; WD40_repeat_dom. DR PANTHER; PTHR19918; PTHR19918; 1. DR Pfam; PF12894; ANAPC4_WD40; 1. DR Pfam; PF02362; B3; 2. DR Pfam; PF04278; Tic22; 2. DR Pfam; PF00400; WD40; 3. DR SMART; SM01019; B3; 2. DR SMART; SM00320; WD40; 6. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF50998; SSF50998; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS00678; WD_REPEATS_1; 2. DR PROSITE; PS50082; WD_REPEATS_2; 4. DR PROSITE; PS50294; WD_REPEATS_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Repeat {ECO:0000256|SAAS:SAAS00723881}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221, KW ECO:0000256|SAAS:SAAS00723873}. FT DOMAIN 390 469 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 629 727 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 890 1168 WD_REPEATS_REGION. FT {ECO:0000259|PROSITE:PS50294}. FT REPEAT 907 948 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 991 1032 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 1039 1083 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 1127 1160 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT DNA_BIND 390 469 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 629 727 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1186 AA; 132332 MW; E02547E586B829EA CRC64; MEPSLKPNPF LSFSSFLHTH CNRFASDLSA RFEDTKRFAE SLTTRRFSPP PFASVSQSPK PSSAGTSTAT LNPSHVAKAL AGTSVFTVSN TNNEFVLISD PTGEKSIGLL CFRQEDAEAF LAQARLRRRE LKANAKVVPI NLDQDYVSVS YEFMCLGVKS QLICLCLAFI NLVYNMVYLL KVEGISFRFL PDPIQIKNAM ELKSSSSKNG FDGVPVFQSE LLVVRKKNKR YCPVYFSKED IEKELSKYTR ASRADQQIMS GSSCVGSISG FYHRLIRHGT NNLVLSQVGS LEDVLRKMER SEKNSGWEDV IFIPPGRSYA QHMQESQEPH STLARWLGEE DGRELRRLHE MGRTTLLESF SNRPFLSAPP SWLSQSPCAL ILKPLSFFLV AIPKKFSTYC KRKLPKIVTL KSPSGAKYNV GLEEDDEKTL AFRCGWDKFV KDHSLHESDL LVFKFNGSSE FEVLIFDGDT LCEKPTSYFV RKCGHAEKTS RATDFTATSS RSPKRHINIP DDVETTVNQQ GPVKVSPVGN ELDDLIDIDT MLPQTGIEQE EHSNSDIDTD SGQLPVISPT SKGPISEGKY PIGVFKKMRG QISINDLNRK AGGSRKRVGE TNKKKALSLA KRAVSTKGFL VVMKRSHVVS KCFLYVPVQW SARNMSREPQ DVVMQVGETK WQLKFKHYGS KGRGGVSVGW KKFVRDNNLC EGDVCVFEPT KPEAKPFHLD VYIFRAAEAE SSNNTTSMNT STHLKAQARC PLQEHFLPRK NSKENLDRFI PNRSAMDFDY AHYALTEGNK GKDQVSSPSR EAYRKQLAET MNLNHTRILA FRNKPQAPVD LLPTDHSASL PHQPKSVKPR RYIPQTSERT LDAPDIVDDF YLNLLDWGSA NVLAIALGHT VYLWDASTGS TSELVTIDEE KGPVTSINWA PDGRHVAVGL NNSEVQLWDS GSNRQLRTLK GCHQSRVGSL AWNNHILTTG GMDGQIVNND VRIRSHVVET YRGHTQEVCG LKWSGSGQQL ASGGNDNVVH IWDRSVASSN STTQWLHRLE EHTSAVKALA WCPFQANLLA TGGGGGDRTI KFWNTHTGAC LNSVDTGSQV CSLLWSKNER ELLSSHGFTQ NQLTLWKYPS MVKMAELTGH TSRVLYMAQS PDGCTVASAA GDETLRFWNV FGVPETAKKA APKAVHEPFS HVNRIR // ID A0A0D3DHN6_BRAOL Unreviewed; 352 AA. AC A0A0D3DHN6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g116840.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g116840.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g116840.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g116840.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013595910.1; XM_013740456.1. DR EnsemblPlants; Bo7g116840.1; Bo7g116840.1; Bo7g116840. DR GeneID; 106304075; -. DR Gramene; Bo7g116840.1; Bo7g116840.1; Bo7g116840. DR OMA; NDHCICE; -. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 39999 MW; A49AA7EF3305A11D CRC64; MAEDDTPPRF FKVFISHHSS DSMMIPISYT DELPRTLPKT AILQGTGGCF WKVEMKRKRD EVHFGKGWNK FVTDNSLTDG DFLTFVYNGA NVFEVSIYGL GGCKEMRAVT EVEEVKEDSV VSLSSTDSDT SSKSEVANTI SKNKGKSQVV EVEDESEEAE AETCSESTVA KTTTGSRNKG KKKEKVVGSS NEDSDSDYTE ANEDSESDDT EASDQLNAFS ESSNTVAQPK KKRERVTVKK IKDPERYLVD PKNVFFETNV KNRPYELLVS AQLVKDYDLK FKKLVYYTDY HKDGKLQAKT TKWKDNRVCI KKWNRICKRN KLKKGDGILC ELKRKEGFVY AVRIHIVREK DL // ID A0A0D3DIE2_BRAOL Unreviewed; 513 AA. AC A0A0D3DIE2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo7g119400.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g119400.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo7g119400.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo7g119400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo7g119400.1; Bo7g119400.1; Bo7g119400. DR Gramene; Bo7g119400.1; Bo7g119400.1; Bo7g119400. DR Proteomes; UP000032141; Chromosome C7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR006912; Harbinger_derived_prot. DR Pfam; PF02362; B3; 1. DR Pfam; PF04827; Plant_tran; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 392 489 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 392 489 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 513 AA; 58769 MW; 52C9E8B73A28C537 CRC64; MSSSSSDEVD ARLDEICDEY VEEIYNDIVE TQTIPQRTRQ YVERHREGGQ DQLWNDYFSE DPTFSTAIFR RRFRMNKNLF LCLVHGLEEY FPFFQQRRDA TGRWSLTALQ KCTAAIRLLA YGNAADTVDE YLRLAETTAL SCLHNFTDGI IQLFGNEYLR RPTPEDLQRL LDIGEKRGFP GMVGSIDCMH WEWKNCPTAW KGQYARGSGK PTIVLEAVAS HDLWIWHAFF GPPGTLNDIN GLDRSPVFDD ILQGRAPRVK YKVNRHTYKL AYYLTDGIYP KWSTFIQSIT LPQTPQHDLF AKVQEATRKD VERAFGVLQS RFAIVRNPVK TLNKEKIGKI MRACIILHNM IVEDERDGYS RIDISEFEEG DVMRSSQDEL GQCLFSHLTT VFLAEVTASN LKEDKLYLLV GDTSSTALHK QCKETILVNK EGNSWNVSLR FSESGGKYYI TRGWRKFCLD NRCEIGDLFA FNVVGDGKTT PLMCVCPERK ECSEILSKYL SRTSGESSLG GHS // ID A0A0D3DJK4_BRAOL Unreviewed; 168 AA. AC A0A0D3DJK4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g011550.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g011550.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g011550.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g011550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013604041.1; XM_013748587.1. DR EnsemblPlants; Bo8g011550.1; Bo8g011550.1; Bo8g011550. DR GeneID; 106311401; -. DR Gramene; Bo8g011550.1; Bo8g011550.1; Bo8g011550. DR OMA; FKESKAE; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 165 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 165 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 19415 MW; 03A797F4B3327EA7 CRC64; MATPKILKKR GRKKKNPNPE EVNSSTPRGD DSENRSKFYE SASARMRTVT AEERERGITA AKTYEPTNPF FRVVLRPSYL YRGCIMYLPS GFAEKYLSGI SSFIKIQLGE KLWPVRCPYK AGRAKFSQGW YEFTLENNIG ERDVCVFELL STRDFVLKVT AFRVNQYV // ID A0A0D3DJK8_BRAOL Unreviewed; 193 AA. AC A0A0D3DJK8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g011590.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g011590.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g011590.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g011590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013602987.1; XM_013747533.1. DR EnsemblPlants; Bo8g011590.1; Bo8g011590.1; Bo8g011590. DR GeneID; 106310295; -. DR Gramene; Bo8g011590.1; Bo8g011590.1; Bo8g011590. DR OMA; PRVNIKS; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 22101 MW; B411330F846CFF30 CRC64; MNTTRRASSR ITSAASQRRQ KPEPEPAVKK FIKIILPSTI KEKMMKIPAR FVRLGPKLTD TVTIQTPVGF KRSIRIKRTG NEVWFDNGWS EFAEAHSISE GHFLYFCYEG NSSFRVMIFD VSASEIDYPM DKVHVIESDD DEVMEVMDTD DEEGFTRVDS SDNDSSDEEA IDLEKLLKKK PRVNVKSETI NID // ID A0A0D3DNY9_BRAOL Unreviewed; 284 AA. AC A0A0D3DNY9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g059570.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g059570.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g059570.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g059570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo8g059570.1; Bo8g059570.1; Bo8g059570. DR Gramene; Bo8g059570.1; Bo8g059570.1; Bo8g059570. DR OMA; MKSNNDE; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 32790 MW; 6021451D4B7FDE73 CRC64; MMFPKEREIG SSSGLGQGEV DVKNLSFFKI FQGDDLSSES MRAFPYDFIR NVPQNDYSSN MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTG LMCFNVKIYE ENGKELVTPR RPRTMASLKS SNKDVKKKAE ETGGVRVKSK RFEEGETSKK KKKKMKSNND EDTVPVFNIT IKTSYLKFLP IPTYFADVHI PKTYKMVTIH HSNGNCSWEV VCLVRKTRAT FSSGWARLVR EYPLSVGDFC TLKFIKPTEF HLAVSKKVEE IMSD // ID A0A0D3DQC4_BRAOL Unreviewed; 1020 AA. AC A0A0D3DQC4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g068380.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g068380.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g068380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013605108.1; XM_013749654.1. DR EnsemblPlants; Bo8g068380.1; Bo8g068380.1; Bo8g068380. DR GeneID; 106312216; -. DR Gramene; Bo8g068380.1; Bo8g068380.1; Bo8g068380. DR OMA; LWASQTQ; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 892 985 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1020 AA; 113085 MW; 9387B6B658505F23 CRC64; MKAPSNGFHP NSTEGEKKPI NSQLWHACAG PMVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSSHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLLAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLVMRFRMMF ETEDCGVRRY MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM GMQQNNTLSA GYTTTQLPSA YNLPNNFAAN DPSKLFNFQS PNLSPVNSQF NKPNMVSSHI SQQMQVQPAM VKSQQQEQQK VQMSHQQLQQ GVFNAGCANN GVSVVSCQNQ STGFSQSELQ QQSMLSNGSA KMNNQNKGSS QMTLQELQFQ QQMELHNSSQ NQQEQSSMHS LQQNPQQLQM QQQPSQPSPS QKLQLQLLQK LQQQQQSIPP VSSSLQPQLS AALQQTQSHQ LQQLLSSQNQ QPFSASTFMQ PPQVQLSHHQ QQGHMNNKPL VAAGRRSHSG HTDGEAPPSC STSPSAKNTI HDNISPTNFL SRNQQQGQAV SVPEPDPVQE LYTKTESRNN LRSAADQINV STAGTTYCPD AVGTAQQQQQ AFPLPSFGDC QRNNLAFAGN LEAVTTSDAL YSQKDFQNLV PTYGNAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNDSGIMNG GGLWPNQAQR MRTYTKVQKR GSVGRSIDVT RYSGYEELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATNQVCSETD SGNAWKVHYE DTSAAASFNR // ID A0A0D3DQG9_BRAOL Unreviewed; 846 AA. AC A0A0D3DQG9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g069820.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g069820.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g069820.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013604468.1; XM_013749014.1. DR EnsemblPlants; Bo8g069820.1; Bo8g069820.1; Bo8g069820. DR GeneID; 106311742; -. DR Gramene; Bo8g069820.1; Bo8g069820.1; Bo8g069820. DR OMA; SINAPTI; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 740 824 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 846 AA; 93809 MW; 0420B8270C28DA59 CRC64; MASLACGEDK MKTNGLVNGG TTTSSTSQST LLEEMKLLKD QSGTRKPVIN SMLWHACAGP LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVLPV PDFGLLRGSK HPSEYFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFFNPRA CPAEFVIPLP KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGENDWGSLI KRPLPYATFP NMASEQLMKM MMRPHNNQNA VTSLMPEMQQ NVMMGHGGLL GDVKMQQPMV MNQVVQVQPD NNNPSVSNTS GQEQNLTQSI NAPTITENSS GRANHGNEEL SQKPSALSPL QADPCPEQIY PPQQSDPING FSFLETEELT SQVSSFQSLA GSYKQPLMLS SNESSPIVLP DSTNSFQDMW DNQLNGLKFD QFSPLMQQED LYGCQNMCMS NSTNSNILDP PPLSNTVLDD FCAIKETEFH SLVGNNNSFA QDVQSQITSA SFADSQAFSR QDNSGGTGGT SSSNVDFDDT SLLQQNSKGS WQKLATPRVR TYTKVQKTGS VGRSIDVTSF RDYEELKSAI ECMFGLEGLL TRPQTSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIRIL SPTEVQQMSE EGRKLLNSAC INDLKT // ID A0A0D3DQY2_BRAOL Unreviewed; 210 AA. AC A0A0D3DQY2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g071450.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g071450.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g071450.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g071450.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo8g071450.1; Bo8g071450.1; Bo8g071450. DR Gramene; Bo8g071450.1; Bo8g071450.1; Bo8g071450. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 210 AA; 23848 MW; 12895989376CAB34 CRC64; MDGRDFGLVM RKTLVILDRS RKKKSQRRKA IALSTKRRRI PRQQTAIPAA NDGDLSPSTE QGFQKELGIN SILILFTFVS CLQMANPHEP HFFKPLLPGF QSGVTIPLAF FSKHIEGKTN QKTWKLRSDA SDQTWEVIQE DRTLTRGWKD FTTAHDLQIG DLVIFKHEGD MVFHVTPFGP SCCEIQYTHP HIIKEEADAG DADDNEISKS // ID A0A0D3DSQ9_BRAOL Unreviewed; 217 AA. AC A0A0D3DSQ9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g082670.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g082670.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g082670.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g082670.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013603807.1; XM_013748353.1. DR EnsemblPlants; Bo8g082670.1; Bo8g082670.1; Bo8g082670. DR GeneID; 106311121; -. DR Gramene; Bo8g082670.1; Bo8g082670.1; Bo8g082670. DR OMA; HSRCKET; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 24200 MW; CCA3CA6D10D916E7 CRC64; MAENEDDVAL SRFFKVFLSE TASESMAIPM SFNEHLEDPL PRKAKLQGTG GGVWTVSFTT IRDCAYFSSG WSKFAEDHEL KDGEFLTFVY DGHPTFEVRV FGHSRCKETR AVVETVELSD SDDEEEEDSS VEADGEVEEV SQSIYPVDSN QTVSYDEVVA RVSSTEVTGN PCFTTNLKQR TYELFIPANV VREHALTFGD SIKYIDAEGV MKGGRGK // ID A0A0D3DUY1_BRAOL Unreviewed; 561 AA. AC A0A0D3DUY1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g097320.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g097320.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g097320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013604928.1; XM_013749474.1. DR EnsemblPlants; Bo8g097320.1; Bo8g097320.1; Bo8g097320. DR GeneID; 106312090; -. DR Gramene; Bo8g097320.1; Bo8g097320.1; Bo8g097320. DR OMA; VYARITL; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 457 549 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 561 AA; 62938 MW; 5020CFEADEC73192 CRC64; MGKVDGDDSR SSFPSCYQDQ LYTELWKACA GPLVEVPLVG ERVFYFPQGH MEQLVASTNQ GIESEKIPDF KLPPKILCQV LSVMLKAEHE TDEVYAQITL KPEEDQSEPT SFDPPIVEPA KQMFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMTQ ATPTQELVTR DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV SSKRLVAGDA FVFLRGENGD LRVGVRRLAR HQNTMPASVI SSQSMHLGVL ATASHAVNTQ TLFLVLYKPR ISQFIVGVNK YMEAMKHGFS LGTRFRMRFE GEESPERIFT GTIVGVGDLS SQWPASTWRS LQVQWDEPTT VQRPDKVSPW EIEPFLPSSP VSTPAQQSQP KSKRSKPIES SSLSPGQASF LGVQAEPPPP PPPASSCYRL FGFDLTSNPP APIPPDKQPM DACEAAKCQD PITPSSVNEP KKQQTSRTRT KVQMQGIAVG RAVDLTLLKS YDELIKELEE MFEIQGQLLP RDKWIVVFTD DEGDMMLAGD DPWNEFCKMA KKIFIYSSDE VKKMTRRMKS YSSLENEVSM D // ID A0A0D3DUZ8_BRAOL Unreviewed; 292 AA. AC A0A0D3DUZ8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g097490.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g097490.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g097490.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g097490.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013600770.1; XM_013745316.1. DR EnsemblPlants; Bo8g097490.1; Bo8g097490.1; Bo8g097490. DR GeneID; 106308181; -. DR Gramene; Bo8g097490.1; Bo8g097490.1; Bo8g097490. DR OMA; DKLYIDW; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 33072 MW; 9ABA05DDEFA43DAA CRC64; MNQENKKPLE EASTSMEREN MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DNSSTNNKGL LLDFEDRTGS SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR DPCNKDKLYI DWRRRPKIPD HHQFAGAMFP WFYSFPHPQM PTSFESSHNL YHHRFQRDLG IGYYPTAVIE SVPVIMQRRE AQVANMVSSR GEKRLRLFGV DMECGGGGGG SVNSTEEESS SSGGSMSRGG VSMAGIGSLL QLRLVSSDDE SLVAMEGANV DEDHHLFTTK KGKSSLSFDL DI // ID A0A0D3DVL0_BRAOL Unreviewed; 531 AA. AC A0A0D3DVL0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g099610.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g099610.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g099610.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g099610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo8g099610.1; Bo8g099610.1; Bo8g099610. DR Gramene; Bo8g099610.1; Bo8g099610.1; Bo8g099610. DR OMA; GRFLTIR; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 146 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 434 530 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 146 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 434 530 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 61043 MW; 1BCED421212CF198 CRC64; MAFCSPTNPH FFQPLLPGFT KHLDIPAAFF LKHLDKSNKG KTAKLRSDAS ETTWNVKLDG RRFSDGWEYF AVAHDLRVGD IVVFRHEGEL VFYVTALGPS CCEIQYGEED SQEEDKSEEL CDTMEKISRM KKRPKTEKKN SEDQSCFVIT VTESNLRRDI VYLPKAFAVV NCLMKKLEIV LMNEERESWK LYLTQESYSS RFYMSKGWRS FCVANGKKPG DMFTFKMVQN EATPVLKLLP LNNEDLHKLV DTEEVPKKKR QEIEADSSFV AIVTASNIRR DTMYLPKKFA ASNGLKSKFK IDLMNEKGES WTIELRHEPY SGRFLIRSGW RSFCVANGKK PGDMFNFKLI RNVETPVLKL FPLNLPKLGK FPLNMHKLEP SNDTRQGFEA TEKEFLGVQT NRDDSRQEPT NEAIRKGKWL EANETTIKEE NITTSENRFV TLILTTSKLD LPLEFTKGNG IKNAEKIKMI DRYGTTWSTS LLMDKKKRGA MKLGKGCIRF CEVNGVKMGE SFVLELVWED TVPVLKFCSK C // ID A0A0D3DVL1_BRAOL Unreviewed; 368 AA. AC A0A0D3DVL1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g099620.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g099620.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g099620.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g099620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo8g099620.1; Bo8g099620.1; Bo8g099620. DR Gramene; Bo8g099620.1; Bo8g099620.1; Bo8g099620. DR OMA; WERSWAM; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 168 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 300 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 168 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 300 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 41470 MW; B9D78F77AEE41543 CRC64; MVLDLSDLEP VGCNNGQDET ELKRNKKAKK NNPEREVDSS ISSDHSCFVA LVTASNLHKD ALDLPKEFAS SNLLEKECRK IVLRDRWERS WAMDLAFNKS SDTFNIRQGW RSFCDENGKK AGSFFVFKLI GNRETPLLSL CSTESTSNKN NTESCVEHST TPPIKSRLMT LTIEHASFRK GSLRLPLRFM KKHGLDKPRL ITLLGKDGTK WVANLRRESS GGRMRLGKGW KDFALDNGLK VGDSFTFELV GKNNTPPMLS LIRTKSTSDT RQPSSGNKTR EGKKTIEERR DSSSAMKNQL VTLTLTPEDV RACQLILPSQ FMKANGIYKL GKITLLGKNG TRWLAFLFST VKRWTSGSWM WLEGLLPS // ID A0A0D3DVL2_BRAOL Unreviewed; 970 AA. AC A0A0D3DVL2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g099630.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g099630.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g099630.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g099630.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo8g099630.1; Bo8g099630.1; Bo8g099630. DR Gramene; Bo8g099630.1; Bo8g099630.1; Bo8g099630. DR OMA; ISDDITW; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 8. DR Gene3D; 2.40.330.10; -; 8. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 7. DR SMART; SM01019; B3; 7. DR SUPFAM; SSF101936; SSF101936; 8. DR PROSITE; PS50863; B3; 8. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 43 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 85 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 465 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 497 576 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 665 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 710 806 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 867 965 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 43 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 85 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 370 465 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 497 576 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 587 665 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 710 806 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 867 965 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 970 AA; 109472 MW; 1C43510529A659E1 CRC64; MSGPILSDGW REFAVAHSLQ AGHFILVRYE GNMVFHVSHC REIPSNNNKH SHPRTDVDDL PNKKKRAKTN SNETEADSSS LDNSCFVATV TSFNLLIDTL YLPQHFTSSN GLTRESHKIV LIDGEGRSWT LDLRFNASSD TFYMTRGWRS FCEENGQEAG GFFTFKLVGN GETLVLSFRP TESTSSTRQR DSSEEEDTEW ETDEDEPLME TEKKKCNPKG RAVPYSSYSP CHKRFLTFTL PLDYFRIERL SLPKQFLREN GINKPGEICL LDKDGMKWPT SLLRDKKGIM SLGKGWKEFV KSNGLASGFT LKLIWEDTTP AFSLCCPEST SDKEQQEYFK HIKKQSLYID PSNNGDNSSK DSSPSSHNPL VTIKIRPDIL TCNRMRLPKQ FVMESNMNKP GTIYLLGKDD TKWTTKLVKE RDGRMKLGSG WTVFAEANGF KPGESVTLES VWEDGTPMIR FLRTGSNSSK YTKKESVSTE VTEPRTSGSS SEIHDRFVTL TLLPEDVKAG VLIIPSQLLE ANGVNKLGKI TILGEKKMEL SGYLLSRGGT VALENGWGEF CEANGVKLGE SFTLEFIKKP DKTTHTIPVA FCSKHVEGRN EHMTTAKLRS DISDDITWKV KIEDGRKLTD GWKEFALAHD LRVGDIVIFR QEKDMAFHVT LFGPSCCEIQ YGSCLKKKNK LKLSKIQNKK KVKKKNKKKY VESSLLDPSC FVNNVRPSSL RDNRLTLPKR FVRENGLETR CGEIVLMNEK GRSWNLNLAR KDSCGTMSIT GGWKSFCNAS GLRAGSLFTF KLIKRGDTLV LLKSPSSIKS AEEDCLEAYE IEPDREEASN QDEKPRLLWK ASTSSPSQKK PRSLWKASTS SPSQNLFLTL TLKTSDVKNS RLFIPVNFTR LHGINKETEM AMLDKNGVKW STSLRSETSG GDRIRLVGGW KEFFKANCVE IGESIIVKLI WEGDKSCVLE FYSKVKQETK // ID A0A0D3DVL7_BRAOL Unreviewed; 711 AA. AC A0A0D3DVL7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g099680.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g099680.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g099680.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g099680.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo8g099680.1; Bo8g099680.1; Bo8g099680. DR Gramene; Bo8g099680.1; Bo8g099680.1; Bo8g099680. DR OMA; FAMELIW; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 178 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 333 426 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 485 580 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 607 702 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 178 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 333 426 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 485 580 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 607 702 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 711 AA; 80178 MW; 1A9A5CF89AA91C20 CRC64; MAKSRLLRPQ FFHTLVPGFH THLMIPEDFF SKYIEEGRSM AAELISDASD KKWRLKMTGR RLGDGWREFA VDNNLRFGGV LLVRYEGDMV FHVSNLGQNC CEIQDISPPC NKFDKTLLKK RLHPRTQVDR CDEDEDGIVQ LQSLRCGTDT ELPRNKKTEM RSPEAEAEPL SSSSDNSCFV ALVTASSLRT DKLYLPQHIT SSNGLTRKCR KIVLVDGGER SWTLDLSFNK SSDTFCMSRG WRNFCEENGQ EPGGFFMFKL VGNRETPVLS LGLTESNNDT RVCSQASERE SLSTELSSED EYIQGESSED DCSSMESLME TGKKKCSPKR RVTSYASYSS YLPYYKRYSL PALFVRENGI NKPGEIHLLG KDGTKWPTSL LVNIRGSMSL GKGWKDFVKA NGVESGFTLK LMWEDTTPVF CLCSADSTSD REQEEYFKAI RKQSLFMDPS NIENSSKDEK NKEENMSWER KKRGRGSTPL SLKQFVTLTI TPCCFITCRL VLPAQFAREN SLNKLRMIYL LGRDGRKWLT KIHQDKKGRM SLGKGWKDFV EANNFKSGDS FAMELIWEDG TRMLRLSGAE SSSSKAYVST EAGSSSDSSS SAIQNRSVTL TLTPEEVRAC KLHLPSEFMK ANGINRLGKI TLLGANKMEW SAYLLTRDGT VALGIGWDEF CEANGVSLGE SFTLEFSKEQ NRTTPVLKFC SLETNKKVGK C // ID A0A0D3DXK0_BRAOL Unreviewed; 487 AA. AC A0A0D3DXK0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo8g107500.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g107500.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo8g107500.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo8g107500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo8g107500.1; Bo8g107500.1; Bo8g107500. DR Gramene; Bo8g107500.1; Bo8g107500.1; Bo8g107500. DR OMA; DELEHAK; -. DR Proteomes; UP000032141; Chromosome C8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 2. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 329 434 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 329 434 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 487 AA; 54486 MW; 8F7485B58E47930D CRC64; MEVSSVDEST TSTCSIYETP AITPAKTSVN LHRMGSGSSV VLDAENGAEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VHRFRGRDAV TNFKDARLDD GEVEFLSSHS KSGIVDMLRK HTYSEELEQS KRRRNGNGNA VRSTTQNDGV STTEFRSAVS LFEKAVTPSD VGKLNRLVIP KHHAEKYFPL PPSSNVSVKG VLLNFEDVAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LRAGDVVSFS RSDGQDQQLY IGWKSRSGSD VETGRVLRLF GVNISPAGSR NDVVGNKRVV NVTEMLSLVC SKKPPSDVGK LNRLVIPKHQ AEKHFPLPLT GDVSVRGTLL NFEDVNGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLRA GDVVSFSRSD GQDQQLYIGW KSRSGSDVET GRVLRLFGVN ISPAGSRNDV VGNKRVVNVT EMLSLVCSKK QRIFHAL // ID A0A0D3DZU8_BRAOL Unreviewed; 306 AA. AC A0A0D3DZU8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g004050.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g004050.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g004050.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g004050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013610495.1; XM_013755041.1. DR RefSeq; XP_013610496.1; XM_013755042.1. DR EnsemblPlants; Bo9g004050.1; Bo9g004050.1; Bo9g004050. DR GeneID; 106317192; -. DR Gramene; Bo9g004050.1; Bo9g004050.1; Bo9g004050. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 35131 MW; CB5188C8E003590A CRC64; MASGSGNNNN NFNMAMGEHM FDKVLTTSDV GKLNRLVIPK QHAENYFPLE EIQNGTMLDF QDRNGKMWKF RYLYWSSSQS YVMTKGWVRF VKDKNLESGD TISFHRSYVL DDTEPGKRIK KLYVDWRHRA DRNLVHNINH HHHYPLFMPP TYPSAGYYPL SGYSMPHYQR LPPFYHNQFQ ERDFSGYGYG GPDYAGSPWG HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS AILPPHQPPQ EGTAKKLRLF GVDVEESSSS GEARGEMAVA GYSSSSPVVI RDEESSSAMQ LSEDEEYKRK GKSIDF // ID A0A0D3E0C3_BRAOL Unreviewed; 491 AA. AC A0A0D3E0C3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g007780.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g007780.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g007780.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo9g007780.1; Bo9g007780.1; Bo9g007780. DR Gramene; Bo9g007780.1; Bo9g007780.1; Bo9g007780. DR OMA; CPPEVEI; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 412 491 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 75 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 491 AA; 56626 MW; CFB3AB0CC8D6CB77 CRC64; MANNQIMNAQ PKFRGTEGVN RYLYDQLWKL CAGSLFDLPK IGEEVYYFPQ GHIEQVETNS DEVYAKVSLL TCPPEVEILF PNDNNEQNIK YFTKDMSQLT PSQEIVAKDL HDHVWKFKHT FRGTPKKHFF TSGWKEFVRG KSLAVGDSFV FLSIFFSRGE NGESRVGIRK AAHQQSDMSS SVISKESMHH GFIASASNAI HTKCMFDVFY KPKSSKFIVN CDKFLDAVTR KFNTSSRFTM KFEGHDFNQI TYSGTIVKVE DFSIYWKGSE WRNLQVQWDE PATIPRPNKV SPWEIEPLIP SSNIFKSVIR KNKRQREINE FVSYAGPIMS KPDYNHQMVQ STKENSTTNA SSSFRLFGVD LTASSKARDV LEPLESYQNN KISEIFEEEK LDQIQAVTSL TEIQRKEISF TTSSTKVHME SVVKTVDLTV FDGYNHMIVE LEKLFNIEGK LHMHSQWKLT FKVHEGDMML VGDDLWPKFC NIVKEIFISS K // ID A0A0D3E1S4_BRAOL Unreviewed; 829 AA. AC A0A0D3E1S4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g014770.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g014770.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g014770.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013611610.1; XM_013756156.1. DR EnsemblPlants; Bo9g014770.1; Bo9g014770.1; Bo9g014770. DR GeneID; 106318259; -. DR Gramene; Bo9g014770.1; Bo9g014770.1; Bo9g014770. DR OMA; HESAYTD; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 703 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 829 AA; 92568 MW; BE5923F506DDFA90 CRC64; MTSSEAINVA VSGEGQKGHS NRVVDAEAAL YRELWHACAG PLVTVPRQDD RVFYFPQGHI EQVEASTNQV AEQQMPLYDL PSKILCRVIN VDLKAEVDTD EVYAQITLLP EAIQDENAIE KEAPPPPPPP RFQVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHANEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QQGYVSSSVI SSHSMHLGVL ATAWHAISTG TMFSVYYKPR TSPSEFIVPF DQYMESVKNN YSIGMRFKMR FEGEEAPEQR FTGTIVGIED SDPTRWAKSK WRSLKVRWDE TSSIPRPDRV SPWKLEPALA PPALSPVPMP RPKRPRSNIA PSSPDSSMLT REGSAMGNKD PLPASGLSRI LQGQEHPTLR TKHTETVECD APESSVVWQS SADDDKVDVV SASRRYENWM SSGRHESAYT DLLSGFGANV DPSPGHQIPF YDHSSLPSVS ANKFIGDRDG KFDYFANQWQ MMHSGLSLTL HESPKIPAAS DTSFQGRGNA KYGEYPVLHS LTTENAGGNW PIRPRAVNYF EEAVQAHAQA QAREHVTKRP EMVEETAKSR DGNCRLFGIP LVNNVNGTDS TMSPRNNFND TAGLTQMTSP KVQDLSDQSK GSKSTNDQRE QRRPFQANHS HPKDVHTKTH SSRSCTKVQK QGIALGRSVD LSKFQNYKEL IAELDRMFEF NGELMAPKKD WLIVYTDDEN DMMLVGDDPW QEFCGMVRKI SIYTKEEVRK MNPGTLGCRS EEEAVVGEGS DPKDAKSASN PSLSSAGHS // ID A0A0D3E2J7_BRAOL Unreviewed; 305 AA. AC A0A0D3E2J7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g020470.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g020470.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g020470.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g020470.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013609709.1; XM_013754255.1. DR EnsemblPlants; Bo9g020470.1; Bo9g020470.1; Bo9g020470. DR GeneID; 106316381; -. DR Gramene; Bo9g020470.1; Bo9g020470.1; Bo9g020470. DR OMA; VIHPCEM; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 191 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 191 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 35181 MW; E0140299F264F6AB CRC64; MVERSEKGSY ARKDTEFFKV YLPEFSFRKL VIPPAFVNIL EKLLPNQVGL LDEIGRLWKV ETKTEEGVGD VVFKKGWEKF ANDHSLEFGD FLVFSYDGVS RFSVKIFDKN GCKKYLVAVT TADRSRVAVE KEPVLVKPVD DISTKRCGKS RKRVSVKEEP SGNRVIHPCE MGCVPENKKH KGFEEPVYKP KNPHFVRNIT DCFRQMEIPT TFLKSNGIEM EENFELCDEN GKKWPMKVVI HDRGQRFSPG LWLSFCRSHK LSTSNKCLFE FIVRSDGTCN QVLVRIFRGR MLNTVTINSY QVLAM // ID A0A0D3E5U9_BRAOL Unreviewed; 480 AA. AC A0A0D3E5U9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g055750.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g055750.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g055750.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo9g055750.1; Bo9g055750.1; Bo9g055750. DR Gramene; Bo9g055750.1; Bo9g055750.1; Bo9g055750. DR OMA; TIYNERM; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 369 449 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 38 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EnsemblPlants:Bo9g055750.1}. SQ SEQUENCE 480 AA; 54966 MW; 0160AAB8BD36713D CRC64; VETNTNEIYA EVSLLPDTSD VEIPIPKTEN NIQNINYFTK VLSASDTSTN GGFVLYKRHA IECLPLLDVS QLTPSQEIIA KDIHGHEWSF KHTLRGTPKK HLFTSGWNEF AKGKKLVAGD SFVFLRGENG ESRVGITKAA HQQRNIQTSL ISKQSMHHSV VATALNAIEN KCMFVVFYKP RSSQFIVNFD KFVDRVNNKF NIGSKFSMKF DGKDLNEIRY NGTVVGVRDF SDHWKDSEWR SLEVQWDEAA TIPRPDKVSP WEIELLTHSS NIFKSDTLKH KRQLEKHKRQ LEVHEFGTKM WVPTIYNERM VQAMKEPSTT TATTSCRLFG VDLMVPAITK DPVEPIVSNK KCKISKIFED EKVDHVQATS RTKVHMEGVI ERTVDLTIFD GYNQLIDELE RLFDIKGELH MHNQWKMFFI YNDGDMMILG DDPWPKFCNM AKEIFICSKE DVKIGIANNR FSEGDPALTT TILPPDVNNT // ID A0A0D3E733_BRAOL Unreviewed; 119 AA. AC A0A0D3E733; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g067020.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g067020.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g067020.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g067020.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo9g067020.1; Bo9g067020.1; Bo9g067020. DR Gramene; Bo9g067020.1; Bo9g067020.1; Bo9g067020. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13560 MW; 0A470A59A82EC1D4 CRC64; MSSFSFDYCF LAEVTASNLN EDKLYLPVGA TSSTPLHKQC QETILVNKEG NLWNVSLRFS ESGGKYYITR GWRKFCLDNR CEIGDLFVFN VVGDEKTTPL MCVCPERKEC SEIIMLSLH // ID A0A0D3E7R9_BRAOL Unreviewed; 560 AA. AC A0A0D3E7R9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g074330.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g074330.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g074330.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g074330.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo9g074330.1; Bo9g074330.1; Bo9g074330. DR Gramene; Bo9g074330.1; Bo9g074330.1; Bo9g074330. DR OMA; ALCTNDG; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 560 AA; 63273 MW; 44FC1EA8D6428492 CRC64; MMFFPVSSRS SSHNSRPLSM SGSEEDDVLP RFFKVFLSQT ASESMAIPMS FNENLEDPLP QTAKLQGIGS GVWTVSFKKI RDRAYFTSGW SKFAEDHEFK DGEFLTFVYD GSHTFEVSIF GRSGCKEIRA AVETVNLSDV DSDKKEEEEE DSSVVADTNK EEEEEGDDDD PSFDAGEDDE VSQSVDSDDI VSNAEVVEGF SNLEVESNPC FTSTLKSRIY ELLIPANVVK EHKLKFCDRI KYIDGEGIMH GVKGKWTDDR IFFKGWDKIC RRLKSMILST GTVAQGFNAQ NRVNRYEDEL KRGSIYTLTN FFGSNNKVMY RVADQKLVIC FTHISVLKKL KENIEAILDQ RFKFHSYADF EANCDLRGDL HDVVGHLKLV DGQTLHQRLA LCTNDGSTSR KIMVHLQLKD GPVVNVDLWD QAAENFRRKF DESVTTPTIL MVTTVNPKRL GVEVVNVETL TIREIADFIK RQPAKIAYFD CIATIDDVKL GTEWYYIACK VCQTKLTHGP TMLMCPKCCN ENATALANFR VELSVYDNEE QCTFIILGDA GKELTGRKAT // ID A0A0D3E7Z6_BRAOL Unreviewed; 506 AA. AC A0A0D3E7Z6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g076090.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g076090.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g076090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo9g076090.1; Bo9g076090.1; Bo9g076090. DR Gramene; Bo9g076090.1; Bo9g076090.1; Bo9g076090. DR OMA; YASSKSM; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 405 485 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 94 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 506 AA; 57928 MW; 1B1E1A31DC27F77D CRC64; MENNKIRNAQ PKFQGTDGTN RYLYNQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQAHVDT NTDEVYAKVS LSPCSPEFEV SIPNGNNEQN INYFTKVLTA SDSSTHGGFS LFKKDAIECL PLLDMSQQAP SQWIVAKDLH DHVWKFKHTF RGTPQRHLFT SGWKQFVRKK SLAVGDSVVF LRGENGESRI GIRKAAPQQS NISSSVISKE SMHHGLVATA LNAINTKCMF DVFYRPKSSK FIVNCKKIID AVNMKFNTGS RYSGTIVKVE DFSIYWKDSE WRNLQVQWDE AATIPRPNKV SLWEIKPLIR ENKRQREIGL AMSKPDYNDQ MVQSTKENST TNASSSFRLF GVDLTASTKA RDVLEPLESY QKSKISKIFD DEKLDQIQAV TSLTEIQTKK IRFTTSSTKV HMEGVVRTVD LTDFDGYNHM IVELEKLFNI EGKLHMHSQW KLTFKVHEGD MMLVGDDSWL NKIEDISKYM NVQVEELCKR VDKLTRLHYA SSKSMP // ID A0A0D3EBL0_BRAOL Unreviewed; 155 AA. AC A0A0D3EBL0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g123380.1}; DE Flags: Fragment; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g123380.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g123380.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g123380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo9g123380.1; Bo9g123380.1; Bo9g123380. DR Gramene; Bo9g123380.1; Bo9g123380.1; Bo9g123380. DR OMA; ESRCLRQ; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EnsemblPlants:Bo9g123380.1}. SQ SEQUENCE 155 AA; 17748 MW; 3095CEE5C5ADB300 CRC64; RENKGESRCL RQAQKLPVGG RLKQKRELAN LGNKQVKEAE KSNKCKKRKV DTDYDDDSEA SGTSSLVPEF TLNQKEIIRP GVPKMFAEMH MPKEETVFKF HDPKQNKSWY VVSKIQSRFS RGWPGLVKDF GLKVGDVCTF ELIKPTEMIL TVDSM // ID A0A0D3ECZ6_BRAOL Unreviewed; 284 AA. AC A0A0D3ECZ6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g141110.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g141110.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g141110.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g141110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013612534.1; XM_013757080.1. DR EnsemblPlants; Bo9g141110.1; Bo9g141110.1; Bo9g141110. DR GeneID; 106318915; -. DR Gramene; Bo9g141110.1; Bo9g141110.1; Bo9g141110. DR OMA; IKIHIIS; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 31878 MW; D50D837C419414B8 CRC64; MKKGDSSDGR LPKFFKVYLP NDSGDDLEIP VSFNSCLPSS VPKSVTVTNI NGHVWKLKLK KLSGDPEKFS MVDGWKRIVK DEDLKGGEFL AFEFDGSRLF NFCVYGQATC KKLGKSAEVE EDESDDDDDD DVIVIDDDDD DDDDDDEVDD EDVDVDVEAD DVDDGMEADG DDDHRQLLDD PDSPSFTVIL NPKKKSQLLI PSHIMKDYNL HFTERITIVD PLVPKFGTLE RKIKLQDNGC LFVKGFGSVF RRNNVKTTDT IICEVKKNGN DVAHILKVHI VRGL // ID A0A0D3ECZ7_BRAOL Unreviewed; 212 AA. AC A0A0D3ECZ7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g141120.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g141120.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g141120.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g141120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013612535.1; XM_013757081.1. DR EnsemblPlants; Bo9g141120.1; Bo9g141120.1; Bo9g141120. DR GeneID; 106318916; -. DR Gramene; Bo9g141120.1; Bo9g141120.1; Bo9g141120. DR OMA; AFEFDCY; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 23510 MW; 2030FAEE8E0E4E17 CRC64; MNKGDSSDDC LPKFFKVYLP DDSGDDLDIP ISFNSFLPKP LPEYIIVRSI YGNIWKLKLR KHCGDDVDKV SMLNGWKRIV KDEDLKGGEF LAFEFDCYRL FNFCIYGQAT CKRLGSSVKT KEITDESEGE DGKSGVDVIV IDDDSTDDDD DDDSVSSGQG SGMEDQSTKD IIVIDEDTTD DDDDETRSGV ETEIIEKGSS EVSTKSDSGE GE // ID A0A0D3ED44_BRAOL Unreviewed; 769 AA. AC A0A0D3ED44; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g143570.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g143570.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g143570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013612783.1; XM_013757329.1. DR EnsemblPlants; Bo9g143570.1; Bo9g143570.1; Bo9g143570. DR GeneID; 106319097; -. DR Gramene; Bo9g143570.1; Bo9g143570.1; Bo9g143570. DR OMA; QSHANPV; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 648 730 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 769 AA; 85179 MW; 4B52D8758AE43411 CRC64; MEFDLNTEFA EVEEEENDEG GGARVEKGKR LGVLPSSSSS CSSRSSSSSS SSTTASASSI YSELWHACAG PLTSLPKKGN VVVYFPQGHL EQGVMVSYSS PLDVPKLDLS PQIFCRVAAV HLLANKETDE VYTQVTLLPL QELSMLNGEG KEVKELGGDE EKNGSSSVKK TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FAPLDYKQQR PSQELIAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KSLVSGDAVL FLRDENGELR LGIRRSARPR NGLPDSIIQK YSSSSILSLV ANAVSNKSMF DVFYSPRATH SEFVIPYEKY ITSIKNPIGI GTRFRMRFEM DDSPERRCAG VVTGVCDMDP YRWPNSKWRC LLVRWDESFM SDHQERVSPW EIDPSGSLPP LSIQSSPRPK RPWAGLLGTT TPQGNPITER GVFLDFEESV RPSKVLQGQE NTGSASSSPL QGFDVMNRRI LDFAGMQQSH ANPVLLSGRV KDRFGEFVDS TSLDLDRFPR VLQGQEICSL RSFPQIAGFT PASASGSPNP FAYQANKSSF YPLASQGIRS SHIPYQSPYN AGDKSSSRKF DAQREGGLPK NVPFKIDMMG TEKGREVNMN ASTTGCKLFG FSLPVETPAS NQQSSSKRIC TKVHKQGSLV GRAIDLSRLN GYNDLLTELE RLFNMEGLLR DPEKGWRILY TDSENDMMVV GDDPWHDFCS VVLKIHLYTK EEVENGNDDN RSCLEQAALM MEASKSSSVS QPDSSPTGH // ID A0A0D3EDC4_BRAOL Unreviewed; 188 AA. AC A0A0D3EDC4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g148330.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g148330.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g148330.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g148330.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bo9g148330.1; Bo9g148330.1; Bo9g148330. DR Gramene; Bo9g148330.1; Bo9g148330.1; Bo9g148330. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 188 AA; 21731 MW; EA3C31E8F9752491 CRC64; MDGRDFGLVT RKTLVILDRS RKKSPDEERR LLSRRGEGES RDDRRLFPRR TTAICLRRLN KMANPHEPHF FKPLLPGFQS GVTIPLAFFS KHIEGKTNQK TWKLRSDASD QTWEVIQEDR TLTRGWKDFT TAHDLQIGDL VIFKHEGDMV FHVTPFGPSC CEIQYTHPHI IKEEADAGDA DDNEISKS // ID A0A0D3EDP6_BRAOL Unreviewed; 1174 AA. AC A0A0D3EDP6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g151530.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g151530.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g151530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013611237.1; XM_013755783.1. DR EnsemblPlants; Bo9g151530.1; Bo9g151530.1; Bo9g151530. DR GeneID; 106317959; -. DR Gramene; Bo9g151530.1; Bo9g151530.1; Bo9g151530. DR OMA; GTDMESA; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1047 1140 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1174 AA; 129754 MW; 8A8E8C4B83B32023 CRC64; MKAPSSNGVS PNPLEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMSLQ PVNKYDRDAL LASDMGLKIN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIFRGQPKRH LLTTGWSVFV STKRLFAGDS VLFVRDGKGH LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDGTDMESA LKRAMPWLDN GLQMKDPSST IFPGLSLVQW MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDPSK LLSFQTPPGG ISSSSLQFSK PNPQAAMSQL PQPPTTLSQQ QHQHQHQQQQ QQSQPLQQPQ SHQHQHQHQH QQQQQQQPQS LHQQQQQQSL LLQQQQQQPL QQQTQQQQLQ QQQQLRMQQL QSHTHPQSQQ SPTHPQSQSH PQQLQPHKLQ QFQLPQNQLY NGHQATQQHQ AQQTSMHHLQ PQVVSGSIAS SVIAPPSSSL NQSFQQQQQS TQLQHTHRHI GASTSQSIVI ETSKSSSNLM SIPPQDTQFS RQMEQQQPPG LVQGHNQPQQ KTQQSQVQQI FPQSLLEQPH LQFQLLQRLQ QQQQKQQQFL SPGSSSLPSQ LLHQQLQSQQ FPQLPSPSQV QQFPSSCTNT GLPTLQPPQM LVSRPQDKQN PPVGGGAKAY SGITDGGDAP SSSTSPSTNN CQISSSTFLN RSQSGPAILI PDPAVDVSGS LVQDLYSKSD MRLKHELGSQ QKPKASLTDH QLEASASGTS YGLDGGENNR QQNFLSTNFG LDGDSRNSLF GGGANAENGF VPETLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR TQSFGIPNVP AISNDLAVND AGVLGGGLWP TQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP LTSDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA EVPQLSLDGN FAGLPATNQA CSGGDNGNGW RGQYDDNSAT SFNR // ID A0A0D3EEJ5_BRAOL Unreviewed; 304 AA. AC A0A0D3EEJ5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g157490.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g157490.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g157490.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g157490.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013610026.1; XM_013754572.1. DR EnsemblPlants; Bo9g157490.1; Bo9g157490.1; Bo9g157490. DR GeneID; 106316684; -. DR Gramene; Bo9g157490.1; Bo9g157490.1; Bo9g157490. DR OMA; GSSWRID; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 34868 MW; F61594E81079764A CRC64; MATNNYIAKL MEESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVLKLPWG SSWRIDLSKY QSFFYYMEQN GWDQFLSDNG LGDDELLTFT HKGNMCFNVS IYKTDCVEIL RPKRSATIAS SSRNKREEVN NVLEEERESL SASNYPVSET AESTVGGRLK QKRQLINLGK KQVKKAEKAN KCKKRKMDTE SDDSEAGTSS LVSEFTLTIK KSYVLFLGVP KRFAEMHMPK EETVFKIHDP KGKKSWEVTY VVSKIQSRFS RGWPGLVKDF GLEVGDVCTF ELIKPTEMIL TVSK // ID A0A0D3EHF2_BRAOL Unreviewed; 287 AA. AC A0A0D3EHF2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo9g176470.1}; OS Brassica oleracea var. oleracea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g176470.1, ECO:0000313|Proteomes:UP000032141}; RN [1] {ECO:0000313|EnsemblPlants:Bo9g176470.1, ECO:0000313|Proteomes:UP000032141} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141}; RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77; RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E., RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., RA Belcram H., Links M.G., Just J., Clarke C., Bender T., Huebert T., RA Mason A.S., Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., RA Batley J., Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., RA Bancroft I., Chalhoub B., Sharpe A.G.; RT "Transcriptome and methylome profiling reveals relics of genome RT dominance in the mesopolyploid Brassica oleracea."; RL Genome Biol. 15:R77-R77(2014). RN [2] {ECO:0000313|EnsemblPlants:Bo9g176470.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_013609500.1; XM_013754046.1. DR EnsemblPlants; Bo9g176470.1; Bo9g176470.1; Bo9g176470. DR GeneID; 106316179; -. DR Gramene; Bo9g176470.1; Bo9g176470.1; Bo9g176470. DR OMA; PPSHSEY; -. DR Proteomes; UP000032141; Chromosome C9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 32435 MW; 40D6EFD532815D4B CRC64; MSVNHYSTDH HHNHTLFWQQ LHTTDATETT TATWLNQDQK ESLFEKTLTP SDVGKLNRLV IPKQHAEKYF PLNAISNNAD ASTEKGMLLS FEDELGKCWR FRYSYWNSSQ SYVLTKGWSR FVKDKQLDPG DVVFFQRQRS DPRRLFIGWR RRGQGSSSAV ANPTSYSSSM VDAPPYLQVH ASSNYSNPPS HSEYSHYGAA VATASETHSI PSSSAVGSSR TVRLFGVNLE CQMDEDDGDD SVAAPNATEC PDGYYGQNMY YYYTPHPHNM NIAFTGDTMK QLGDRRG // ID A0A0D3EJF1_9ORYZ Unreviewed; 325 AA. AC A0A0D3EJF1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G02610.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G02610.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G02610.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G02610.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G02610.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G02610.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G02610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G02610.1; OBART01G02610.1; OBART01G02610. DR Gramene; OBART01G02610.1; OBART01G02610.1; OBART01G02610. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 181 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 181 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 24 46 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 325 AA; 36153 MW; FC38AD5D705F29FC CRC64; MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEEEELAA MEEDELIHVV QAAELRLPSS TTATRPSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA ALRFRGRDAV TNRAPAAEGA SAGELAFLAA HSKAEVVDML RKHTYDDELQ QGLRRGSRAQ PTPRWAREPL FEKAVTPSDV GKLNRLVVPK QQAERHFPFP LRRHSSDAAG KGVLLNFEDG DGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KGLRPGDTVA FSRSAAAWGT EKHLLIDCKK MERNNLATVD AIAVDDDARV VVKLFGVDIA GDKTR // ID A0A0D3EJF2_9ORYZ Unreviewed; 325 AA. AC A0A0D3EJF2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G02620.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G02620.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G02620.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G02620.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G02620.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G02620.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G02620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G02620.1; OBART01G02620.1; OBART01G02620. DR Gramene; OBART01G02620.1; OBART01G02620.1; OBART01G02620. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 34875 MW; C5DF59CAA2B21D70 CRC64; MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA AAAASVAQQS SRYKGVVPQP NGRWGAQIYE RHARAEIVDM LRKHTYADEL RQGLRRGRGM GARAQPTPSW AREPLFEKAV TPSDVGKLNR LVVPKQHAEK HFPLRRAASS DSASAAAAAA TGKGVLLNFE DGEGKVWRFR YSYWNSSQSY VLTKGWSRFV REKGLRAGDT IVFSRSAYGP DKLLFIDCKK NNAAVAATTT CAGDERPTTT TSGAEPRVVR LFGVDIAGGD CRKRERAVEM GQEAFLLKRQ CVVHQRTPVL GALLL // ID A0A0D3ELG0_9ORYZ Unreviewed; 447 AA. AC A0A0D3ELG0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G08400.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G08400.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G08400.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G08400.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G08400.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G08400.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G08400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G08400.1; OBART01G08400.1; OBART01G08400. DR Gramene; OBART01G08400.1; OBART01G08400.1; OBART01G08400. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 111 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 447 AA; 50213 MW; 98740646993608BB CRC64; MAIDQPIKKR GRPPGSKNAK SKMEQKMELV HQRLALLDSS SGSDRDDDIG PRMLMPKEVE NEQRTVPGIP QTCNTQNTSN GRTNTTETVC GSAMERAQEI QTKLPAEHPS FVKHMLHSHV VSGFWLGLPA GFCNKYLPKH DTDIVLEDEN GNNHKTTYLG GKQGLSAGWR GFAINHDIKV GDVVVFELVH IIREKNISTT DRAPGLKSFY ACKKRKISKE ATDNATKPKE DPETTRVSSK MAHDDTQNLV HEAIDGIRFS DSEMSFDDMT SYSNFNIVVD GLVIDCKFPD HQRRTYYELC CAQKSFLHRH LLRQLSLTLV VGVIMETINI AEGIRACGAG TSSQEDFLIW KKTLQSFDLL GMNVAFLLKR VDDLLGLPEQ PRDPSECGKY NELKLERSRA GEKVKALESM MLTVKDVLKK IDAEMEEMES SVRNHDIALR KIATAPW // ID A0A0D3ELI5_9ORYZ Unreviewed; 637 AA. AC A0A0D3ELI5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G08640.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G08640.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G08640.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G08640.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G08640.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G08640.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G08640.1; OBART01G08640.1; OBART01G08640. DR Gramene; OBART01G08640.1; OBART01G08640.1; OBART01G08640. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 533 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 60 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 637 AA; 70768 MW; 4F3271FBFA235FDE CRC64; MFQVPYKILC KVVNVELKAE TETDEVFAQI TLQPDPDQEN LPTLPDPPLP EQPRPVVHSF CKILTPSDTS THGGFSVLRR HANECLPPLD MSMATPTQEL ITKDLHGSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLIS GDAFVYLRSE TGEQRVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAI KTNSIFLVYY RPRLSQSQYI VSVNKYLAAS KVGFNVGMRF KMSFEGEDVP VKKFSGTIVG EGDLSLQWSG SEWKSLKVQW DEVTNVNGPE RVSPWEIETC DGTAPAINVP LQSATKNKRP REPSETIDLQ SLEPAQEFWL SGMPQQHEKT GIGSSEPNCI SGHQVVWPGE HPGYGAVSSS VCQNPLVLES WLKDFNSSNK GVSPTLSEIS QKIFQVTSNE ARIATWPARS AYQAEEPTSK LSSNTAACGY RTEEVAPNAS KVVEGKKEPA MFRLFGVDLM KCTSISTTTD DKSSVGAGEA SAKGTGSHED SGQLSAFSKV TKEHIAADES PREIQSHQNY TARTRIKVQM HGNAVGRAVD LANLDGYEQL MNELEEMFNI KDLKQKWKVA FTDDEGDTME VGDDPWLEFC QMVRKIVLYP IEDEKKIEPH LKLLSSANPE QDQKTGF // ID A0A0D3ESB6_9ORYZ Unreviewed; 669 AA. AC A0A0D3ESB6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G26040.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G26040.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G26040.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G26040.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G26040.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G26040.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G26040.1; OBART01G26040.1; OBART01G26040. DR Gramene; OBART01G26040.1; OBART01G26040.1; OBART01G26040. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 669 AA; 74159 MW; D3E0712D514E3F83 CRC64; MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGAAADAAT DEVYAQVSLV ADNEEVERRM REGEDGAACD GEGEDAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL QRPSQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE LRLGVRRAAQ LKNASPFPAL HNQISNTSSL SEVAHAVAVK SIFHIYYNPR LSQSEFIIPY WKFMRSFSQP FSVGMRFKLR YESEDASERR RTGIIIGSRE ADPMWHGSKW KCLVVKWDDD VECRRPNGVS PWEIELSGSV SGSHLSTPHS KRLKSCFPQV NPDIVLPNGS VSSDFAESAR FHKVLQGQEL LGLKTRDGTV NTASQATEAR NFQYTDERSC SINMSNNILG VPRLGVKTPS GNPGFSYHCS GFGESQRFQE VLQGQEVFRP YRGGTLSDAC IRGSGFRQPD GNHAPGAAFK WLAPQGCDHH GITTSVLPQA SSPSSVLMFP QTSSKMPGLE YIYGCLDRNE NSRHFKIGPT QDMTRTDQTL RLWPHLISGK MLDECTRNEK LHSPVGGAEH ESNNKCLNTN GCKIFGISLT EKAQAGDEVD CGNASYHSRL QSLKPQMPKS LGSSCATHFH RLCYRIQDDD RGNADDARRM LVKFVVMHF // ID A0A0D3EST1_9ORYZ Unreviewed; 395 AA. AC A0A0D3EST1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G27360.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G27360.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G27360.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G27360.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G27360.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G27360.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G27360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G27360.1; OBART01G27360.1; OBART01G27360. DR Gramene; OBART01G27360.1; OBART01G27360.1; OBART01G27360. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 136 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 216 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 136 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 216 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 395 AA; 41527 MW; 3EE81114AFE245EB CRC64; MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GRGGGLRVRG RVCGGGGGGA GGAGGKLPSS KFKGVVPQPN GRWGAQIYER HQRVWLGTFA GEDDAARAYD VAAQRFRGRD AVTNFRPLAE ADPDAAAELR FLATRSKTEV VDMLRKHTYF DELAQSKRAF AASTPSAATT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTAPAPA PVEQMAGCKR ARDLAATTPP QAAAFKKQCI ELALV // ID A0A0D3ET93_9ORYZ Unreviewed; 349 AA. AC A0A0D3ET93; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G28660.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G28660.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G28660.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G28660.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G28660.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G28660.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G28660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G28660.1; OBART01G28660.1; OBART01G28660. DR Gramene; OBART01G28660.1; OBART01G28660.1; OBART01G28660. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 38061 MW; 20500BEAD2C9EDD3 CRC64; MVFMRFRPRI FSPSLFGPSK PRTPTLAASA AAASSPPPPP PPPIPPLPPS TSTSAARPTD MAGVTSKRRS SSASTSSSSG DGAAVSDRPR GVTRKRRSGG RCPRPAASLR PAAPRPSSHH TAGLRVILQK ELRYSDVSQL GRIVLPKKEA EAYLPILTSK DGKKSLCMHD LQNAQLWTFK YRYWPNNKSR MYVLENTGDY VRTHDLQLGD SIVIYKDDEN NRFVIGAKKA GDQQAATVPQ VDEHISTLFP IFPIAQVDDY LSPMAPQVDI SAFVPHADEN HEIFDGILNS LPEIPVANVR YSDFFDPFDD GMDMANTLNA NANQSASLHV TDDKSGHSLI PNPKSGPHM // ID A0A0D3ETI0_9ORYZ Unreviewed; 266 AA. AC A0A0D3ETI0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G29350.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G29350.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G29350.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G29350.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G29350.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G29350.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G29350.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G29350.1; OBART01G29350.1; OBART01G29350. DR Gramene; OBART01G29350.1; OBART01G29350.1; OBART01G29350. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 266 AA; 29869 MW; 9DAFFC34AD12D060 CRC64; MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR TACEREDLMG GGGGGGGDRP RKKRGRPRTA AASRDAARPK KDSVGKEMRF PTGFSRQHLP RERTDVVLRD PGGKVWSVLY IPNTRDRLSR GWCAFARGNC LEEGDYCVFE LVAAAEFRVH IFRVVEPAVP AVRLRRVTVT CGRGPT // ID A0A0D3ETI3_9ORYZ Unreviewed; 787 AA. AC A0A0D3ETI3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G29370.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G29370.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G29370.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G29370.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G29370.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G29370.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G29370.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G29370.2; OBART01G29370.2; OBART01G29370. DR Gramene; OBART01G29370.2; OBART01G29370.2; OBART01G29370. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 611 652 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 787 AA; 89814 MW; DDC2D7DCEA840665 CRC64; MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYCSS PILESRKCSL EEPKLSNQPL QCDLTTKKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER SEERQPSPAS MIYQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETTY TSLELDYKKA TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSD VMLPASAINF PVLTKTKNVL KTSPAEISPD CANFPPYQKS RAHDKNERQG DSPVVIPATH DFFLALFSGS SCVCSKS // ID A0A0D3ETI4_9ORYZ Unreviewed; 719 AA. AC A0A0D3ETI4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G29370.3}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G29370.3, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G29370.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G29370.3}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G29370.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G29370.3}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G29370.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G29370.1; OBART01G29370.1; OBART01G29370. DR EnsemblPlants; OBART01G29370.3; OBART01G29370.3; OBART01G29370. DR Gramene; OBART01G29370.1; OBART01G29370.1; OBART01G29370. DR Gramene; OBART01G29370.3; OBART01G29370.3; OBART01G29370. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 611 652 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 719 AA; 82592 MW; B8771386948644EE CRC64; MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYCSS PILESRKCSL EEPKLSNQPL QCDLTTKKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER SEERQPSPAS MIYQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETTY TSLELDYKKA TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH // ID A0A0D3EU34_9ORYZ Unreviewed; 786 AA. AC A0A0D3EU34; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G31160.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G31160.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G31160.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G31160.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G31160.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G31160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G31160.1; OBART01G31160.1; OBART01G31160. DR Gramene; OBART01G31160.1; OBART01G31160.1; OBART01G31160. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 191 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 191 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 786 AA; 86298 MW; C0441320593ECF8C CRC64; MASSASSSSS PSSRPPLMAL PSFYRPPWPS ERGGEQRATD CWAGSPAAGG GRARATAMGI DLNNTASGGE EDAPAPAPVC RDLWHACAGP VVSLPRRGSA VVYLPQGHLS AAGAGGGIRG EVAVALPPHV ACRVVDVELC ADAATDEVYA RLALRAEGEV FERNLHGGGI EREDDMEDGD EERKSRMLHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DHKQLRPSQE LVAKDLHGAK WRFRHIYRGQ PRRHLLTTGW SSFVNKKKLV SGDAVLFLRG DDGELRLGVR RATQLKNEAI FKAFSSESSK MRTLSAVADS LKHGSVFHIC YNPRATASEY VVPYWKFVKS FNHPVCIGMR FKFHFESEDV NERRSGMIAG VSEVDPIRWP GSKWRSLLVR WEDATDCNSQ NRVSPWEIEI VGGSISVAHS LSASNGNGRP DSVETEKFPR VLQGQELMGS RTHRVTCSPQ SIDITKSKSF DAWRFLTDTR SCMLGSSTSR LPVQYSGYTH QSVSFGESIG FPEVLQGQEI SQTVPPFQGM LPDACSAKSR YELKNYVCTP ATMNGLSSAN EGYCLSLSTV PPSPPSSLML YQTGVPQLEL ASKNNDKSGN DSQPALRQHK LLSETSWDQF KIGKASTPGN ATKPGNGGRE VDRTSSRLFG FSLTEKIIPT DKDGEKEVSY ETDCQNPRML DLFGYNCSTP EVNARFARCT SGARRGKSLI TSVGSSRYVN QIMHTAAYLF SKESWNGWYC RIVKGSAHRP KLKLYHPKPI VILSRVLKNH FYGKSK // ID A0A0D3EXK3_9ORYZ Unreviewed; 691 AA. AC A0A0D3EXK3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G40980.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G40980.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G40980.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G40980.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G40980.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G40980.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G40980.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G40980.1; OBART01G40980.1; OBART01G40980. DR Gramene; OBART01G40980.1; OBART01G40980.1; OBART01G40980. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 594 689 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 594 689 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 77524 MW; 674CF6639E67F217 CRC64; MEAKEEHPGY HFPMRQVEKD GQVVRHQLAS MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKPR TDEQRYDLDP RQHDMPVRVC IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR TPGDCFGMPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IDAAPDDCKK DKDVLHSECN KVAQKVSVPA HSSVKQDITK DGPRQIAAEI MSSGPKTCEL TYVRKNSVQP GNNSKGQESG GTKSCVVLAV AANSKKFCIT IPPPDQTWLE LPRRLPVLPR TKKQARKILI LKDPSMRLWP VLYQCTPKFN GFIAGWADIS RENNLREGDT CEFELCSNSE LSFQVLVPNL Q // ID A0A0D3EXQ8_9ORYZ Unreviewed; 446 AA. AC A0A0D3EXQ8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART01G41410.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G41410.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G41410.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G41410.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G41410.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G41410.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G41410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G41410.1; OBART01G41410.1; OBART01G41410. DR Gramene; OBART01G41410.1; OBART01G41410.1; OBART01G41410. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 255 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 255 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 446 AA; 47123 MW; BB5B9E1F1740723B CRC64; MGSAAATSWM PYQAFTPPAA YGGDAMYPGA AGPFPFQQSC SKSSVVVSSQ PFSPPNAAAA GDMHASGGGN MAWPQQFAPF PVSSTSSYTM PSVVPPPFTA GFPGQYSGGH AMCSPRLAGV EPSSTKEARK KRMARQRRLS CLQQQRSQQL NLSQIHISGH PQEPSPRAAH SAPVTPSSAG CRSWGIWPPA AQIIQNPLSN KPNPPPATSK QPKPSPEKPK PKPQAAATAG AESLQRSTAS EKRQAKTDKN LRFLLQKVLK QSDVGSLGRI VLPKKEAEVH LPELKTRDGV SIPMEDIGTS QVWNMRYRFW PNNKSRMYLL ENTGDFVRSN ELQEGDFIVI YSDIKSGKYL IRGVKVRRAA QEQGNSSGAV GKHKHGSPEK PGVSSNTKAA GAEDGTGGDD SAEAAAAAAA GKADGGGCKG KSPHGVRRSR QEAAAAASMS QMAVSI // ID A0A0D3EY52_9ORYZ Unreviewed; 827 AA. AC A0A0D3EY52; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G42570.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G42570.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G42570.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G42570.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G42570.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G42570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G42570.1; OBART01G42570.1; OBART01G42570. DR Gramene; OBART01G42570.1; OBART01G42570.1; OBART01G42570. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 827 AA; 93236 MW; F62B1A8077D3896B CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHSMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD PSQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSSVYGNSR DQPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATENEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGSV KRDDTRERFR AKIYHYCYCP SQLLPTL // ID A0A0D3EY53_9ORYZ Unreviewed; 808 AA. AC A0A0D3EY53; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G42570.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART01G42570.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G42570.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART01G42570.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G42570.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART01G42570.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART01G42570.2; OBART01G42570.2; OBART01G42570. DR Gramene; OBART01G42570.2; OBART01G42570.2; OBART01G42570. DR Proteomes; UP000026960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 808 AA; 90829 MW; 7552F6EA76DB1C92 CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHSMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD PSQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSSVYGNSR DQPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATENEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGHL PMPNKSDN // ID A0A0D3F0J7_9ORYZ Unreviewed; 1159 AA. AC A0A0D3F0J7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G03410.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G03410.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G03410.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G03410.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G03410.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G03410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G03410.1; OBART02G03410.1; OBART02G03410. DR Gramene; OBART02G03410.1; OBART02G03410.1; OBART02G03410. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1026 1110 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 612 642 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1159 AA; 128520 MW; AEE4FBFEA2A1B927 CRC64; MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVIIISLS LSLSSSSIID LVAASMQKDV DAHVPSYPNL PSKLICLLHG VNLHADPDTD EVYAQMTLQP VNTYGKEALQ LSELALKQAR PQMEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELQARD IHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV IVVRDEKHQL LLGIRRANRQ PTNISSSVLS SDSMHIGVLA AAAHAAANSS PFTIFYNPRA SPTEFVIPFA KYQKALYSNQ ISLGMRFRMM FETEELGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE SAAGERRNRV SIWEIEPVAA PFFLCPQPFF GVKRPRQLDD ESDMENLFKR AMPWLGEEVC IKDTQNQNST APGLSLVQWM NMNRQQSSSL ANTAAQSEYL QALGNPAMQN LAADELARQL YVQNNLLQQN CIQFNSPKLP QQMQTMNDLS KAAIPLNQLG AIINPQDQKQ DAVNHQRQQN SIQVIPLSQA QSNLVQAQVI VQNQMQQQKP SPTQNPQRIN GQRLLLSHQQ QDQNLQLQQQ LLLQQKQQLQ QQQQQQQNQQ QLNKSLGQLV NLASQQSKLF DEELQLQILQ KLQQQSLMSQ STSTLSQPPL IQEQQKLITD MQKQLSNSHS LAQQQMMPQQ EIKPSLQATP LLPTVQQEQQ QKLLQKQVSL ADVSGVAFQP ISSTNVIPKT GGAMIISGAT QSVVTEEMPS CSTSPSTANG NHFTQSTKNR HCINTERLPP STAPMLIPTS IDAVTATPLM TKELPKPNNN VKQSVVNSKL PNVAPGPQNC INNALQTDNL ETSSSATSLC PSRTDGLVHQ GFPSSNFNQH QMFKDALPDV EMEGVDPSNS GLFGINNDNL LGFPIETEDL LINALDSVKY QNHISTDVEN NYPMQKDALQ EISTSMVSQS FGQSDMAFNS IDSAINDGAF LNKNSWPAAP PLQRMRTFTK VYKRGAVGRS IDIGRYSGYE ELKHALARMF GIEGQLEDRQ RIGWKLVYKD HEDDILLLGD DPWEEFVNCV RCIRILSPQE VQQMSLDGDL GSNVLPNQAC SSSDGVNGWR PRCDQNPRNP SIGPYDQFE // ID A0A0D3F140_9ORYZ Unreviewed; 908 AA. AC A0A0D3F140; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G04960.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G04960.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G04960.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G04960.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G04960.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G04960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G04960.1; OBART02G04960.1; OBART02G04960. DR Gramene; OBART02G04960.1; OBART02G04960.1; OBART02G04960. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 777 861 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100777 MW; 13F85FD23625362C CRC64; MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWTNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLMWLRDSQ NTGFQSLNFG GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AALQNTTKQV SPAMLQFQQP QNIVGRSSLL SSQILQQAQP QFQQMYHQNI NGNSIQGHSQ PEYLQQPLQH CQSFNEQKPQ LQPQQQQQES HQQQPQHQQM QQQKHLSNFQ TVPNALSVFS QLSSTPQSTP STLQTVSPFS QQHNFPDTNI SCLSPSNVSS MHDTLRSFPS EAASDLPGVP RITPVPVSDP WSSKRVAVES TITSRPHDIS SQIENFDLTP SSIPQNSTLA PLPGRECLVD QDGSSDPQNH FLFGVNIDSQ SLLMQDGIPS LHNENSSSTI PYSTSNFLSP SQDDYPLSQT LTTPGCLDES GYVPCSDNAD QVKRPPATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR QESRSLSTGI ASVGSVEF // ID A0A0D3F209_9ORYZ Unreviewed; 289 AA. AC A0A0D3F209; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G07450.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G07450.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G07450.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G07450.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G07450.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G07450.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G07450.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G07450.1; OBART02G07450.1; OBART02G07450. DR Gramene; OBART02G07450.1; OBART02G07450.1; OBART02G07450. DR OrthoDB; EOG09360KHU; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 31848 MW; 4E80C185E66640BA CRC64; MEEQMSNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEG EERELRDAKL LVAGVGRRRR GRMWDVKVVA DDGGAYLGRG WLRFARAHGL RDGDLLVFRY DGAAAFTVTV FDDGTMCRRA YHDAAGSGSS SDDDGNDGRG EAAATSQFVV TLRQGNLGKK QAQYLLTNQP TGRRSPAAMA AAAAEQNVPV EFQEAHGYAA REKVVLRMRG RSWTVRLKHT KGRRPRRERA VLRYGWHRFC ADNGLAVGDT CFFRALRSAS SGAGDVDDGD GDHVLSVTVH KADGGDPLE // ID A0A0D3F4T8_9ORYZ Unreviewed; 267 AA. AC A0A0D3F4T8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G15610.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G15610.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G15610.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G15610.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G15610.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G15610.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G15610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G15610.1; OBART02G15610.1; OBART02G15610. DR Gramene; OBART02G15610.1; OBART02G15610.1; OBART02G15610. DR OrthoDB; EOG09360IMJ; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29307 MW; 8FB6904185B74F24 CRC64; MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC GHLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARHVPSL GQARLHDGNQ DGSGAPSRHV PSSGRCVEAQ LSRVSSRRQR CTMKHSIPEP TIETPPILES MFLIAAPPAV KCLRLFGVNI YVLPVSSSGQ PKQESSP // ID A0A0D3F4T9_9ORYZ Unreviewed; 272 AA. AC A0A0D3F4T9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G15620.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G15620.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G15620.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G15620.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G15620.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G15620.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G15620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G15620.1; OBART02G15620.1; OBART02G15620. DR Gramene; OBART02G15620.1; OBART02G15620.1; OBART02G15620. DR OrthoDB; EOG09360KAP; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 29846 MW; 99AD7D06A22106A1 CRC64; MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KALMPSDVSW DTEQLVIPDE HVGKLLDMVV MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS TACGRFFICC RRTCMSFLPL PTTSHRIHGS SVLPQPRAAQ AAHHPFSGHA TLCLGNKASD HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP // ID A0A0D3F6E9_9ORYZ Unreviewed; 678 AA. AC A0A0D3F6E9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G20600.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G20600.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G20600.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G20600.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G20600.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G20600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G20600.1; OBART02G20600.1; OBART02G20600. DR Gramene; OBART02G20600.1; OBART02G20600.1; OBART02G20600. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 548 641 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 74806 MW; D9D1351292E200F4 CRC64; MAGSVVAAAA AGGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKVQWD EPSVVPRPDR VSPWELEPLA VSSSQPSPQP PARNKRARPP ASNSIAPELP PVFGLWKSSA ESTQGFSFSG LQRTQELYPS SPNPIFSTSL NVGFSTKNEP SALSNKHFYW PMRETRADSY SASISKVPSE KKQEPSSAGC RLFGIEISSA VEATSPLAAV SGVGQDQPAA SVDAESDQLS QPSHANKSDA PAASSEPSPH ETQSRQVRSC TKVIMQGMAV GRAVDLTRLH GYDDLRCKLE EMFDIQGELS ASLKKWKVVY TDDEDDMMLV GDDPWPEFCS MVKRIYIYTY EEAKQLTPKS KLPIIGDAIK PNRNKQSPES DMPHSDLDST APVTDKDC // ID A0A0D3F768_9ORYZ Unreviewed; 1041 AA. AC A0A0D3F768; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G22890.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G22890.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G22890.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G22890.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G22890.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G22890.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G22890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G22890.1; OBART02G22890.1; OBART02G22890. DR Gramene; OBART02G22890.1; OBART02G22890.1; OBART02G22890. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 346 439 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 979 1041 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 346 439 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 979 1041 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1041 AA; 117641 MW; E330192FA2A6EF11 CRC64; MDDAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK KCSHHDMKKN LRNDANEEKR KSSDDMRDGD FEEKKKCSRH DMKKNLRNDA XGEXRKSXDD MRDGDDEEKK KRSRHDMKKN SRNDADEEKR KRKRKRKRKC SDDLKKSVLN DASKEATSHS DWRKNRKAGS DAEQRGKKLL NGDKKAKSRK VTTPFFEKMR KIKMQRTSNQ NGEKNMKSDG DSYKKTVPLS VNKGKMEKDG TNKRTLSNTL VAKERKMRPS DSMEMKMKKK KRDASFVQPD ERTAQTFSTK NKEKKRKAPS TPLKREQKER VASSDNKKET KKACIVAIGN EKKNCRDGKK KKRKAAFAFF KFVRDEFEEL LFIPPAVAPS LKDLIDRHVY LEDSEGKCSK IRLSVVDGSL AFYEGWNSFV SEHCIKWGEF LLFEYTPEST FSVRVFGIDS CERLHFSVKS GGKGAVKKRK ERHTLSDDLI SHYNGQYQDS EDIHDDPNVS GESPRSKEPK IAVDAEIGTR NLVAKSINAA SETQDSERVE SGIGYGSLGA LGNKVRNLSN GECDTRSDSV FCIQEKTRRS EVIIISDEAY STQVDEDTMK QTAPSEASEI HHVTINTQKD LERVVDGVCC ESSVALNNKM GNLILGEPKN KNISPACSTE KTNGSEITPT TGAIPLTQEN IDTVKLNTLS CFEEDRSTTR ESELAAAIPT ISETHDSDKD LGQKHQRNSV QVNSIIAVDK YLNDSEMNIS GNIFRIYEAP AGTRCLEKWK RGIVNGRAAL DDIGQVRPEK TQKAGEKLVG NCGAMGESPV DLRIESDVTD TCLKPILNIP IEELSILDSV SISKCGRSRT EVNHLFNQKG ATVQLQTKKE PLKPTGSSGN RKGDKIAVSV NRVFAHQSEL QIPQQENGNF TSCVTPVALL PAKAELLDLD DHSLQFCIPS TIQKWLVFSY SVVQWMQFVE FMLIAVRAEL PKSLPITCRQ KGRYDRNVVI LKDPMRRLWP VFYHDKPVFV GFTAGWKPFA AANNLQAGDV CKFVKEMDED ELAFQVYITR K // ID A0A0D3F7V6_9ORYZ Unreviewed; 599 AA. AC A0A0D3F7V6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G24860.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G24860.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G24860.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G24860.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G24860.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G24860.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G24860.1; OBART02G24860.1; OBART02G24860. DR Gramene; OBART02G24860.1; OBART02G24860.1; OBART02G24860. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 513 593 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 77 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 599 AA; 65221 MW; BA0232E3ADD87BCD CRC64; MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPAGARRA RARPRRAGAL RGARPGARAL PRRVRATVVA KDVHGVAWNF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRGDGG DLHVGIRRAK RGFCGGGGGA EEASLPGWDQ YGGLMRSNAS PCAAAKGRGK VRAEDVVEAA RLASGGQPFE VVYYPRASTP EFCVRAAAVR AAMRVQWCPG MRFKMAFETE DSSRISWFMG TVAGVQVVDP IRWPQSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSSMPA IHLSSFSPPR KKPRIPAYPE FPFEGQLLNP AFPPNPLAHG HHHYHHNHPS FFPFPDVSAP AGIQGARHAQ FGPSLSDLHL THLQSSLMYP GLRRPDHVGP TPIPPPRIST DLTMGSSPPA RALSMGAKKP DDAKPPGLML FGQRILTERQ MSLSGTTSPA ATGNSSLNWN TEKGASEGSG SGVIQNSPTD NTSSERLQWF RENSTVSELG LEPGQCKVFI ESDTVGRNLD LSSLASFEQL YGRLSEMFCI DSAELRSRVL YRGATGEVRH AGDEPFSEFI KLARRLTILT DAGSDNLGS // ID A0A0D3F8Z0_9ORYZ Unreviewed; 410 AA. AC A0A0D3F8Z0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G28100.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G28100.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G28100.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G28100.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G28100.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G28100.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G28100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G28100.1; OBART02G28100.1; OBART02G28100. DR Gramene; OBART02G28100.1; OBART02G28100.1; OBART02G28100. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 199 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 199 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 43584 MW; AB79EAC675DD8308 CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY FPLDAAANEK GLLLNFEDRA GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF SRGIGDEAAR HRLFIDWKRR ADTRDPLRLP RGLPLPMPLT SHYAPWGIGG GGGFFVPPSP PATPYEHRLR QGLDFRAFNP AAAMGRQVLL FGSARIPPQA PLLNARAVAA ATTTTRCSRA AMVAAGSPVV LDSVPVIESP TTAAKRVRLF GVNLDNPHGG GGAAAAAGES SNHGNALSLQ TPAWMRRDPT LRLLELPPHH HHGAESSAAS SPSSSSSSKR DAHSALDLDL // ID A0A0D3F8Z1_9ORYZ Unreviewed; 151 AA. AC A0A0D3F8Z1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G28110.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G28110.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G28110.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G28110.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G28110.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G28110.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G28110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G28110.1; OBART02G28110.1; OBART02G28110. DR Gramene; OBART02G28110.1; OBART02G28110.1; OBART02G28110. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 145 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 151 AA; 15837 MW; 39F5C4578742049C CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY FPLDAAANEK GLLLNFEDRA GKPWRGGRRK K // ID A0A0D3FAV4_9ORYZ Unreviewed; 1288 AA. AC A0A0D3FAV4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G33670.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G33670.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G33670.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G33670.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G33670.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G33670.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G33670.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G33670.1; OBART02G33670.1; OBART02G33670. DR Gramene; OBART02G33670.1; OBART02G33670.1; OBART02G33670. DR OrthoDB; EOG09360BAX; -. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008107; F:galactoside 2-alpha-L-fucosyltransferase activity; IEA:InterPro. DR GO; GO:0042546; P:cell wall biogenesis; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR004938; XG_FTase. DR Pfam; PF02362; B3; 1. DR Pfam; PF03254; XG_FTase; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1134 1198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1134 1198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1288 AA; 146133 MW; 1959C19824DB5A46 CRC64; MYYVKFQLHR AAAAASPSHG APEDTPETST RHDDDRLLGG LLSPAFDEHS CRSRYTSSLY RRRSPFRPST YLVERLRRYE ARHKRCGPGS ALFQEAVEHL RSGRNAARSE CQYVVWTPFN GLGNRMLALA STFLYALLTD RVLLVHAPPE FDGLFCEPFP GSSWTLPADF LITDFDGVFT MWSPTSYKNM RQAGTISNAT AEQSLPAYVF LDLIQSFTDA AFCDDDQQVL AKFNWMVIKS DVYFAAMLFL MPAYERELTQ LFPEKEAVFH HLARYLFHPS NDVWGIVHRF YEAYLSRADE LVGLQVRVFP EMPIPFDNMY EQIIRCSEQE GLLPKLGQTV VVTAANGSSV VAPSTKLTSI LVTSLFPDYY DRIRGVYHAR PTETGEYVAV HQPSHEREQR TEARGHNQRA LAEIYLLSFC DRVVTSAVST FGYIAHGLAG VRPWVLLRPP SPVARAEPAC VRSETVEPCL QALPRRMCGA AEGSDIGALV PHIRHCEDVQ KGVKLGWPPA GRAAENEARR WGRLRRASAR AALVLCSLTM IPVVVVLHRC AVSSSWPDRV FEAKHIAGAG EQVSVVQRTV TLSVKLFGVM FYCNDIPLSS SDMQDDLPDD LTASQYIGYD KFLGGLLQEG FDEVSCRSRY QFARYHKNFT RIPSSYLLER LRRQEALQKK CGPGTKSYKQ AVKLLRSSQG VNMTTDCNYL FLTVHAGLGN RMLEIASAFL YALLTNRILL LDRYQEIGDL FCEPFPGTSW LMPSDFPLNY GEFTQSSPES YGNMLQNKVV GDNTDRSLAG SRPPYVFLYL DGNYEFHDKL FFCEDDQQFL QDVPWLIMRT DMYFIPSLFL IPSYQDELSR LFPEKDAVFH HLARYLFHPT NSIWYSVKGY YRSYLAKANK TVGIQIRIFE KEGILQKNGR FPYVLEQILS CAQNEKLLPE ISMKDEAEAP TATKNNQTIA VLTTSLSSWY SNQIQKKYSE HPTVDGTRVE VYQPSHEEYQ RSKNKKHNMK ALAEIYLLSM TDVLITSGFS TFGYAAQGLS GLTPWIMFRS ENHAMPDPPC RRAMSIEPCF HQAPFYDCKA KRNADLGKMV PFVRHCEDVS WGLKVITEEQ NSTRGEALPA AVEELRRLRH RRRGHLQLCK GVLLNFEDGE GKVWRFRYLY WNNSQSYVLT KGWSRFVREK GLRASDTIAF SRLAYGPDKL LFIDCKRHTE AATGDEKPIT SGEAARVNNT AAATGDEKPI TSGEATRVVR LFGMDIATGG GDYRKWERAV EMGQEAFLMK RQCVHSAPHY TVRSAKAI // ID A0A0D3FAV5_9ORYZ Unreviewed; 1259 AA. AC A0A0D3FAV5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART02G33670.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G33670.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART02G33670.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G33670.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART02G33670.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G33670.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART02G33670.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART02G33670.2; OBART02G33670.2; OBART02G33670. DR Gramene; OBART02G33670.2; OBART02G33670.2; OBART02G33670. DR Proteomes; UP000026960; Chromosome 2. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008107; F:galactoside 2-alpha-L-fucosyltransferase activity; IEA:InterPro. DR GO; GO:0042546; P:cell wall biogenesis; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR004938; XG_FTase. DR Pfam; PF02362; B3; 1. DR Pfam; PF03254; XG_FTase; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1105 1169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1105 1169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1259 AA; 142960 MW; 0B419247A9759D37 CRC64; MYYVKFQLHR AAAAASPSHG APEDTPETST RHDDDRLLGG LLSPAFDEHS CRSRYTSSLY RRRSPFRPST YLVERLRRYE ARHKRCGPGS ALFQEAVEHL RSGRNAARSE CQYVVWTPFN GLGNRMLALA STFLYALLTD RVLLVHAPPE FDGLFCEPFP GSSWTLPADF LITDFDGVFT MWSPTSYKNM RQAGTISNAT AEQSLPAYVF LDLIQSFTDA AFCDDDQQVL AKFNWMVIKS DVYFAAMLFL MPAYERELTQ LFPEKEAVFH HLARYLFHPS NDVWGIVHRF YEAYLSRADE LVGLQVRVFP EMPIPFDNMY EQIIRCSEQE GLLPKLGQTV VVTAANGSSV VAPSTKLTSI LVTSLFPDYY DRIRGVYHAR PTETGEYVAV HQPSHEREQR TEARGHNQRA LAEIYLLSFC DRVVTSAVST FGYIAHGLAG VRPWVLLRPP SPVARAEPAC VRSETVEPCL QALPRRMCGA AEGSDIGALV PHIRHCEDVQ KGVKLGWPPA GRAAENEARR WGRLRRASAR AALVLCSLTM IPVVVVLHRC AVSSSWPDRV FEAKHIAGAG EQDMQDDLPD DLTASQYIGY DKFLGGLLQE GFDEVSCRSR YQFARYHKNF TRIPSSYLLE RLRRQEALQK KCGPGTKSYK QAVKLLRSSQ GVNMTTDCNY LFLTVHAGLG NRMLEIASAF LYALLTNRIL LLDRYQEIGD LFCEPFPGTS WLMPSDFPLN YGEFTQSSPE SYGNMLQNKV VGDNTDRSLA GSRPPYVFLY LDGNYEFHDK LFFCEDDQQF LQDVPWLIMR TDMYFIPSLF LIPSYQDELS RLFPEKDAVF HHLARYLFHP TNSIWYSVKG YYRSYLAKAN KTVGIQIRIF EKEGILQKNG RFPYVLEQIL SCAQNEKLLP EISMKDEAEA PTATKNNQTI AVLTTSLSSW YSNQIQKKYS EHPTVDGTRV EVYQPSHEEY QRSKNKKHNM KALAEIYLLS MTDVLITSGF STFGYAAQGL SGLTPWIMFR SENHAMPDPP CRRAMSIEPC FHQAPFYDCK AKRNADLGKM VPFVRHCEDV SWGLKVITEE QNSTRGEALP AAVEELRRLR HRRRGHLQLC KGVLLNFEDG EGKVWRFRYL YWNNSQSYVL TKGWSRFVRE KGLRASDTIA FSRLAYGPDK LLFIDCKRHT EAATGDEKPI TSGEAARVNN TAAATGDEKP ITSGEATRVV RLFGMDIATG GGDYRKWERA VEMGQEAFLM KRQCVHSAPH YTVRSAKAI // ID A0A0D3FD45_9ORYZ Unreviewed; 308 AA. AC A0A0D3FD45; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G01650.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G01650.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G01650.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G01650.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G01650.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G01650.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G01650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G01650.1; OBART03G01650.1; OBART03G01650. DR Gramene; OBART03G01650.1; OBART03G01650.1; OBART03G01650. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 33559 MW; 0CCB87E438562C31 CRC64; MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA AGARFLLPPS STPIYDHHRR HAHAVGYDAY AAATSRQVLF YRPLPPQQQH HPAVVLESVP VRMTAGHAEP PSAPSKRVRL FGVNLDCANS EQDHAGVVGK TAPPPLPSPP SSSSSSSGKA RCSLNLDL // ID A0A0D3FEQ2_9ORYZ Unreviewed; 237 AA. AC A0A0D3FEQ2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G06210.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G06210.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G06210.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G06210.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G06210.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G06210.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G06210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0D3FEQ2; -. DR EnsemblPlants; OBART03G06210.1; OBART03G06210.1; OBART03G06210. DR Gramene; OBART03G06210.1; OBART03G06210.1; OBART03G06210. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26569 MW; C72DB584F9E94066 CRC64; MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK // ID A0A0D3FFC8_9ORYZ Unreviewed; 230 AA. AC A0A0D3FFC8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G08090.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G08090.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G08090.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G08090.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G08090.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G08090.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G08090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G08090.1; OBART03G08090.1; OBART03G08090. DR Gramene; OBART03G08090.1; OBART03G08090.1; OBART03G08090. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 118 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 118 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 26088 MW; 1A7EAE4ECC6C0A5E CRC64; MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV KVFDDDVSGD VYLGRGWQEF ARAHDLQSGS SSSSDSSDAA AAAAAEGVGD VALSQFAVTL RQCNLEDKQA QYLNVPMEFQ EAHEYARREK VVLRMRGEAW TVRLKHSRRE RGQRTAFRYG WHRFCVDNGL AVGDTCFFRV LREGDLRRGG AADDHVLKVA VRKADGTTLE // ID A0A0D3FL06_9ORYZ Unreviewed; 199 AA. AC A0A0D3FL06; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G25130.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G25130.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G25130.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G25130.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G25130.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G25130.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G25130.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G25130.1; OBART03G25130.1; OBART03G25130. DR Gramene; OBART03G25130.1; OBART03G25130.1; OBART03G25130. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 21559 MW; E06BAE839F8BF81A CRC64; MATIVAWESR SLQLQGGGGG HGGGGGERRE YMFEKVVTPS DVGKLNRLVV PKHYAEKYFP LGPAARTSPA GTVLCFEDAR GGGGGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL FGVDLQLRAD ASPALDLQL // ID A0A0D3FLB9_9ORYZ Unreviewed; 1594 AA. AC A0A0D3FLB9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G26230.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G26230.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G26230.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26230.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G26230.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26230.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G26230.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G26230.1; OBART03G26230.1; OBART03G26230. DR Gramene; OBART03G26230.1; OBART03G26230.1; OBART03G26230. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 8. DR Gene3D; 2.40.330.10; -; 8. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 8. DR SMART; SM01019; B3; 8. DR SUPFAM; SSF101936; SSF101936; 8. DR PROSITE; PS50863; B3; 8. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 410 504 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 823 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 935 1034 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1133 1233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1262 1355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1492 1590 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 410 504 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 730 823 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 935 1034 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1133 1233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1262 1355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1492 1590 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1594 AA; 180247 MW; FC32B062C96A8EDA CRC64; MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD CEKNHQRVKD LLEIKREASA IVEKQQTWHL LLRIQAREDS PSEHESVESG DLETSQEPYV LSRRSYLSEF QKDKVDALIQ EIQPETTAFV AIMRKSNVQL PTPFLVISFC YAEVHFPHKS VTVTLQRPCK SKKWHPRFYK RKDARMNILR GSWVEFVKDN RVQEQDICVF VPTKDARRNF TFTVHLLRVA AAYSRGGTGV DRAGSSLGRT DVKSASEISI KEEPIDQEEN VSSRNRNGVS DESEEDEDSE GPAHPPYIVP CKSRLSRLQK KIVEEKVRSI QSKFPVYVAI MKKSNVERSA SRCQLELGAR FAAAVHLPDR RQTVVLQRRG ERWATVMQIR SGTRRLLISG WHRFVRDNRL RVGDICLFEF KTHERWRLTM ATPNITTALA SLSPGAAREA TTRPPRLPHP YPLLRSASPS PERPPAKPRG HKDGGGGVLL VSSRSGGLGS RPEWRRRCPP DPRRSGRIWR DGLAAGTGDG GGRGELRRVV LWVMAAGMAT SLGWRWWRSR IRRRRTRIRR RRGGRRWPEH AGTPRLPLAS SGTPLDVGRR WWRGRRPDLA PCPDLARPRV GTGWLESGRR AGGVNIAGNT HRKKSCACCK EYLEHLGGKM RCFLRRMAAD SMHSMIMPDR FVSHFGGKIP GTIKLESPNG ILYVVEVTEC MNKTLLQCGW EAFVDAHNIK EGESLLFRHI ENSRYEVLIL DSDDCEKVFS CAGTRNGSCV QDKTVDPVDS SGSSSNDTTQ SSRSRNTENL TAMCSSSEKS GEDSPSGYEF HESVEPQTPS GSDYVLSRRT YLSEAQKERV VAHIQDIQPE ITVFVAVMKK CNLQSPAPYL VISSRYASVH FPRETATITL QRPSKRKKWY PRFYKRIDKS DHMLRGQWQN FVHDNCLQEE DICLFVPTKG GRNFVFTVHL LQAEATHSRD GTDVHKIGSS QNKRNSKMAS QVHIKEAPGG DVSSESNKHG VSHESLESED SDGPSEPPYI SSMRRRLSQL QKKTVEEKVR AIQSEIPICV ATISKLAGSG GKGKFRGLEL SSRYAASYLP DKNHQTLVLQ CKGMIWQINL VVLRRYTKGK RWFLTAGWRK FAHDNRLRVG DFCLFELKKK KKLTMEVHII SNLQLHMAGG GSRMKKSCAC CKRYLEHLGG KMSCFLIRMT TDSMHSMIIP DRFVNHFGGK IPGTIKLESP NGILYVVEVT ECMNKTVIQC GWEAFVDAHH IKVGDSLLFR HIENSCFEVM ILDSDGCERV FSCAGIKTSS SCVHDKTVDP VDTSGRSSDD TAQPSRSERF ARCQRDTSND RRNTASLTAV SSSSEESENV SLKSNRNGVS DESQESEDSE GPAGPPYILS WKSKSRLSSL QKKIIKEKVR SIQSEVPIYV AIMNKSNIGL TSSPCQLELG ARYAAAVHLP DRRQAVVLQR MGQRWDTVMQ TKSGRCTTRR FLINGWRRFV RDNRLCVGDI CLLELKKHES KLTMTVHTIF SQQS // ID A0A0D3FLC0_9ORYZ Unreviewed; 519 AA. AC A0A0D3FLC0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G26240.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G26240.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G26240.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26240.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G26240.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26240.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G26240.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G26240.1; OBART03G26240.1; OBART03G26240. DR Gramene; OBART03G26240.1; OBART03G26240.1; OBART03G26240. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 416 516 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 416 516 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 519 AA; 59188 MW; B559E35852C29B8C CRC64; MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG CEKVFTWAGI KKTSSVQERN VAPVDISRST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL AETSSSGESG EEGTDSSTFE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS HKRFDLRDGR TWPKVTGARR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS // ID A0A0D3FLC2_9ORYZ Unreviewed; 603 AA. AC A0A0D3FLC2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G26260.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G26260.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G26260.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26260.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G26260.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26260.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G26260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G26260.1; OBART03G26260.1; OBART03G26260. DR Gramene; OBART03G26260.1; OBART03G26260.1; OBART03G26260. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 90 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 398 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 518 600 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 90 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 398 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 518 600 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 603 AA; 69120 MW; F261AA12081C01C5 CRC64; MTFSTPKLPL LSKSNQRLGQ PRSLTWPWEV GNSSGEFVHQ RAGKAQLLQR QISLQDDYSK PRVHMAGQGS QMKKYCDCCK RYVDHSNGKM KCFHRQMSAN FEHSMIIPNK FLDQFGGKIS RTVELESPKG NVYVVKVSKH MNKTVLQCGW EAFVDAHQIE ENDSLLFRHI ENSRFTVLIL DSNGCEKVFS CSGKRRASGV QERNADPIDV SSSTHDDTAQ SSGGERFARS ESGSDSQHRE EAKESSSSEH ESSYDLVDPQ IAPMPGYVLS RGTNLSEAHE EKLDMLVQEI RPEIPLYVTT MKHSNVNSHH ASLVIAKHYA CAYFPRTSQT ITLKWHGKNR KWHPKFYIRK DQVGYILHGR WIDFVRHNHV KEGDICIFHL KNFNGRKFRA TVHLLRETIP HSFGALHIPK RFESRNGRMR LKMTDDRRVS STECRRGTME PSTTNVKKEA DNEQCNNGQG KRQEPLNFDV SVGSSKPYLT ADRVSLTEEQ FRKVEENVHS IQSEGPIYVS IMNKSNTLGR QFATRYLPEG EQTLTLLTTG TGKAWQVKMR PRSGDARMFT LGWRDFVRDN RLQTEDICLF QLMKNSERGL AMTVHIIRHS ERS // ID A0A0D3FLC9_9ORYZ Unreviewed; 919 AA. AC A0A0D3FLC9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G26320.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G26320.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G26320.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26320.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G26320.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26320.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G26320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G26320.1; OBART03G26320.1; OBART03G26320. DR Gramene; OBART03G26320.1; OBART03G26320.1; OBART03G26320. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 317 410 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 602 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 621 714 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 824 919 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 317 410 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 542 602 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 621 714 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 824 919 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 919 AA; 106021 MW; 5AEE9B05FCD59375 CRC64; MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN GNTCSVLVEK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQVGDTCLF ELLKNENPCG QKMRKLNTRS TARDDQEKYF FKVMIGDFHK RMTIPDKFAR HFKGVISKTI KLEPRSGYTF DVQVTKKLNI LVLGSGWESF VNAHDLNMGD FLVFKYNGDF LLQVLIFDPS GCEKSTSCSM ENAIDHVGQG WKEHNDISTS YHDQPKGNKH WMQKDSSSKG NKIGNTRSSN TPSKFSGCIL PRGTCLPVVQ EKKMKEKIQA IHSKTPMYGN VMTKCNVSGS PCVLEITQLY DDAYLPFNNG QELMLRHRDK SWKVRFYRFK NKSRKLTQGW KRFVHDNYLR MGDLCLFEIL KNKYTMNMRR PGARCREGHA HFNGNHIDGQ YKNFFKVMIG RFRERMIIPN EFLQYFRGKI PRTIKLQLRD GCTYDVQVTK NLGKISLQSG WKAFVTAHDL QMGDFLVFSY DGISKLKVLI FGPSGCEKVH SRPTLKNATH CGEKWEEPLH ISSNSHDLPV KSPQNVSKSE KQWDSSEQEN DTANIEEVAL QGDDLQGHPV LNCILPKHTR LTDMQKQQLE SKVGAIHSEI PIYGCILRKS RVHGKSQTVD ICREYADVYL PFKELNMTLQ RHGKNWEVLC RTKDTRTKRL STGWSRFAQE NNLQVGDICL FELLKKKEYS MNVHIIPKK // ID A0A0D3FLD1_9ORYZ Unreviewed; 173 AA. AC A0A0D3FLD1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G26340.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G26340.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G26340.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26340.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G26340.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26340.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G26340.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G26340.1; OBART03G26340.1; OBART03G26340. DR Gramene; OBART03G26340.1; OBART03G26340.1; OBART03G26340. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 173 AA; 19924 MW; 24FB43A54C95743F CRC64; MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS RTDLTRLQKN ILTEKVKAIN SETPIYGYVM NNSSIHGIPC TVEISKKYAD VYLPFEDGTV VLQHHGKSWN VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII RRK // ID A0A0D3FLD2_9ORYZ Unreviewed; 376 AA. AC A0A0D3FLD2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G26350.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G26350.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G26350.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26350.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G26350.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26350.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G26350.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G26350.1; OBART03G26350.1; OBART03G26350. DR Gramene; OBART03G26350.1; OBART03G26350.1; OBART03G26350. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 376 AA; 42217 MW; CF6EF41A5C3730D1 CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS ACKRGLFSDE IEQDHREEKK EGDDEDEDED KDGEDRYYFC RHGGRVTEYN LSKGDKEEIS RVPVPVEPGN PVLVKVIHAS HLLSSRYSTV GVSPEFAGRY LGPAMAREVV MERGGGGGGG DQWHVRFVRR ESSRGFHGTG WRRFARDNGL LAHDVCLFEL RLVDGAGAGD RLRRRPRPTM AVHVLRRVRG RFVLIR // ID A0A0D3FLD3_9ORYZ Unreviewed; 380 AA. AC A0A0D3FLD3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART03G26360.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART03G26360.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART03G26360.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26360.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART03G26360.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART03G26360.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART03G26360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART03G26360.1; OBART03G26360.1; OBART03G26360. DR Gramene; OBART03G26360.1; OBART03G26360.1; OBART03G26360. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000026960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 380 AA; 42459 MW; 21F74C8CCE4FCE7E CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE EVNLRSPSGE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLFRYS GVSSSFDVLI FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRSGRPTPP IVDGDNGHRH HLEMTLHRNS CRSIPRACKR SLFSDETEAK ENDGEDEDED VVAAAEGGRY GEYYFSRHGR VAEYNLREED REEISRVPVP VQPGNAVFVQ VIHSSHVRSS KYCIVGVSPE FAGKYLGAVE REVVLERASR GGEWHVLFVH RQNTRGFYGA GWRQFAGDNH LVAHDVCLFE LTMVDAAAGG GGNRRRRWSR RPTMTVHVLR RVRGRFVLLR // ID A0A0D3FU52_9ORYZ Unreviewed; 341 AA. AC A0A0D3FU52; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G07410.3}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G07410.3, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G07410.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.3}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G07410.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.3}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G07410.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G07410.3; OBART04G07410.3; OBART04G07410. DR Gramene; OBART04G07410.3; OBART04G07410.3; OBART04G07410. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR021183; NatA_aux_su. DR Pfam; PF02362; B3; 1. DR Pfam; PF12569; NARP1; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38921 MW; 319F2F97156312CF CRC64; MEQIHGARRP SANLLPPFPA TDVEGALTFK GLYAPLDIIS DRAIDVSSYR CNIWYFIAVH KCLGLYSENG QYCTNVDRLC TLYISLKKEY GWSSAVKRMP LDFLGGEKFQ EAADNYVRPL LTKGVPSLFS DLSPLYEQPG KALPPEIVAS CNGYHGKYLT LVTRHNKPVN VRLEKIGQSF YICKGWKKFV ELTGLRVGQC IRFSVSSPST LDLLVLDKHG VPKLPMPASS EEHLRFKAKR SIHQNSKVMV QSHRLLSITG STNQRTPNPS LQMISKRRYW EPFNQHDPSQ IDRPLLQPKK RMDKFRPQQW HKAPHSMHFP FLRLPIEEQP SISSEYAINV V // ID A0A0D3FU53_9ORYZ Unreviewed; 381 AA. AC A0A0D3FU53; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G07410.4}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G07410.4, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G07410.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.4}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G07410.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.4}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G07410.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G07410.4; OBART04G07410.4; OBART04G07410. DR Gramene; OBART04G07410.4; OBART04G07410.4; OBART04G07410. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR017853; Glycoside_hydrolase_SF. DR InterPro; IPR021183; NatA_aux_su. DR Pfam; PF02362; B3; 1. DR Pfam; PF12569; NARP1; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF51445; SSF51445; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 199 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 199 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43686 MW; D5E81E55B7669E8D CRC64; MEQIHGARRP SANLLPPFPA TDVEGALTFK AVHKCLGLYS ENGQYCTNVD RLCTLYISLK KEYGWSSAVK RMPLDFLGGE KFQEAADNYV RPLLTKGVPS LFSDLSPLYE QPGKVYSSLL ADFFVKNSNR AVFEIELKWY RIEAKQGKLN YKDSDELLEF FQKRHPPDGC YSKPFAKPVV KALPPEIVAS CNGYHGKYLT LVTRHNKPVN VRLEKIGQSF YICKGWKKFV ELTGLRVGQC IRFSVSSPST LDLLVLDKHG VPKLPMPASS EEHLRFKAKR SIHQNSKVMV QSHRLLSITG STNQRTPNPS LQMISKRRYW EPFNQHDPSQ IDRPLLQPKK RMDKFRPQQW HKAPHSMHFP FLRLPIEEQP SISSEYAINV V // ID A0A0D3FU54_9ORYZ Unreviewed; 314 AA. AC A0A0D3FU54; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G07410.5}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G07410.5, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G07410.5, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.5}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G07410.5, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.5}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G07410.5} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G07410.5; OBART04G07410.5; OBART04G07410. DR Gramene; OBART04G07410.5; OBART04G07410.5; OBART04G07410. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR021183; NatA_aux_su. DR Pfam; PF02362; B3; 1. DR Pfam; PF12569; NARP1; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 35774 MW; 29CFCC93F7B21AFE CRC64; MEQIHGARRP SANLLPPFPA TDVEGALTFK AVHKCLGLYS ENGQYCTNVD RLCTLYISLK KEYGWSSAVK RMPLDFLGGE KFQEAADNYV RPLLTKGVPS LFSDLSPLYE QPGKALPPEI VASCNGYHGK YLTLVTRHNK PVNVRLEKIG QSFYICKGWK KFVELTGLRV GQCIRFSVSS PSTLDLLVLD KHGVPKLPMP ASSEEHLRFK AKRSIHQNSK VMVQSHRLLS ITGSTNQRTP NPSLQMISKR RYWEPFNQHD PSQIDRPLLQ PKKRMDKFRP QQWHKAPHSM HFPFLRLPIE EQPSISSEYA INVV // ID A0A0D3FU55_9ORYZ Unreviewed; 296 AA. AC A0A0D3FU55; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G07410.6}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G07410.6, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G07410.6, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.6}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G07410.6, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G07410.6}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G07410.6} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G07410.6; OBART04G07410.6; OBART04G07410. DR Gramene; OBART04G07410.6; OBART04G07410.6; OBART04G07410. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR021183; NatA_aux_su. DR Pfam; PF02362; B3; 1. DR Pfam; PF12569; NARP1; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 174 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 174 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 296 AA; 33858 MW; 2623C6E8CEA7753C CRC64; MEQIHGARRP SANLLPPFPA TDVEGALTFK AVHKCLGLYS ENGQYCTNVD RLCTLYISLK KEYGWSSAVK RMPLDFLGGE KFQEAADNYV RPLLTKALPP EIVASCNGYH GKYLTLVTRH NKPVNVRLEK IGQSFYICKG WKKFVELTGL RVGQCIRFSV SSPSTLDLLV LDKHGVPKLP MPASSEEHLR FKAKRSIHQN SKVMVQSHRL LSITGSTNQR TPNPSLQMIS KRRYWEPFNQ HDPSQIDRPL LQPKKRMDKF RPQQWHKAPH SMHFPFLRLP IEEQPSISSE YAINVV // ID A0A0D3FUF1_9ORYZ Unreviewed; 312 AA. AC A0A0D3FUF1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G08270.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G08270.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G08270.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G08270.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G08270.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G08270.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G08270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G08270.1; OBART04G08270.1; OBART04G08270. DR Gramene; OBART04G08270.1; OBART04G08270.1; OBART04G08270. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35106 MW; A3FA4832BF8A7FEB CRC64; MAAAAAAAAR RGRRSSRFSC LLPSARCYDI QKRAGQQTLH RIPDKFVRDY ITGENLNSNM AIILSPLGKS WRVELDKDQS GVFLGGGWLQ FLSFHGISRG DVVIFRYEGN LVFKISVFGP NGRQKDFKAK GISIHQGTGE QQEAPSFSRR KCNNKKKSRF GEDDGNQQEM PCSRKGSGNK GRTSDRETKR MRKTRSVYEI GPRSWIKKEI NEYVLERCIL SLARTFCESI GLAEESSITL MMIDTTSTQG DQGGSSSSSR SWEVTGRRYK DACYLLGAGW RRFCEDNGVR SGDVCVFTVL DTTLWRVDIE RC // ID A0A0D3FUZ7_9ORYZ Unreviewed; 358 AA. AC A0A0D3FUZ7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G10000.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G10000.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G10000.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G10000.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G10000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G10000.1; OBART04G10000.1; OBART04G10000. DR Gramene; OBART04G10000.1; OBART04G10000.1; OBART04G10000. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 174 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 40774 MW; D4792EFA7A8B6CD1 CRC64; MQCRGASRAS AEVGHRVEDL WEVAEPQLSP SEKLNSCFED IAVASFHRPL GSQECLDDVW GQETNLGHAG HYSIWKNGNH SRCDMYDVKP KFVSIGSVGS AFSGTRMSTA EWYELQMKES KLCDIGARDA TVALRWGGAR GRRQRRERER ESVGGTTRRD RRPRRLGLGV VRPVPITLAT AYKMQHGDKL KLQISHDLKI KIKIREAAGT LYMTTGWKQF IYATGLRIGE TVLFRMSSCS KARVMVLNRK GFIRCPIRTT SKSSSVQKKS LPATNQAIKT RTFQHGSTNN SRTGTNKRAL DDMSFCHKTT LTAELRSYIK DIAYSLEESN KFYIVRMNRM FMEQNRVYFA KEFSKKYI // ID A0A0D3FUZ8_9ORYZ Unreviewed; 344 AA. AC A0A0D3FUZ8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G10000.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G10000.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G10000.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G10000.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G10000.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G10000.2; OBART04G10000.2; OBART04G10000. DR Gramene; OBART04G10000.2; OBART04G10000.2; OBART04G10000. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 39055 MW; 665CB67DE932F428 CRC64; MQCRGASRAS AEVGHRVEDL WEVAEPQLSP SEKLNSCFED IAVASFHRPL GSQECLDDVW GQETNLGHAG HYSIWKNGNH SRCDMYDVKP KFVSIGSVGS AFSGTRVIID KGARDATVAL RWGGARGRRQ RRERERESVG GTTRRDRRPR RLGLGVVRPV PITLATAYKM QHGDKLKLQI SHDLKIKIKI REAAGTLYMT TGWKQFIYAT GLRIGETVLF RMSSCSKARV MVLNRKGFIR CPIRTTSKSS SVQKKSLPAT NQAIKTRTFQ HGSTNNSRTG TNKRALDDMS FCHKTTLTAE LRSYIKDIAY SLEESNKFYI VRMNRMFMEQ NRVYFAKEFS KKYI // ID A0A0D3FUZ9_9ORYZ Unreviewed; 339 AA. AC A0A0D3FUZ9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G10000.3}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G10000.3, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G10000.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.3}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G10000.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.3}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G10000.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G10000.3; OBART04G10000.3; OBART04G10000. DR Gramene; OBART04G10000.3; OBART04G10000.3; OBART04G10000. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 114 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38715 MW; 498A01629A62BE37 CRC64; MQCRGASRAS AEVGHRVEDL WEVAEPQLSP SEKLNSCFED IAVASFHRPL GSQECLDDVW GQETNLGHAG HYSIWKNGNH SRCDMYDVKP KFVSIGSVGS AFSGTRMSTA EWYELQMKES KLCDMFDDVP VPITLATAYK MQHGDKLKLQ ISHDLKIKIK IREAAGTLYM TTGWKQFIYA TGLRIGETVL FRMSSCSKAR VMVLNRKGFI RCPIRTTSKS SSVQKKSLPA TNQAIKTRTF QHGSTNNSRT GTNKRALDDM SFCHKTTLTA ELRSYIKDIA YSLEESNKFY IVRMNRMFME QNRVVKFLKT YPSPYAHTYH LTFTFVAQYF AKEFSKKYI // ID A0A0D3FV00_9ORYZ Unreviewed; 316 AA. AC A0A0D3FV00; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G10000.4}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G10000.4, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G10000.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.4}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G10000.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10000.4}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G10000.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G10000.4; OBART04G10000.4; OBART04G10000. DR Gramene; OBART04G10000.4; OBART04G10000.4; OBART04G10000. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 35933 MW; A73FAE477897E673 CRC64; MQCRGASRAS AEVGHRVEDL WEVAEPQLSP SEKLNSCFED IAVASFHRPL GSQECLDDVW GQETNLGHAG HYSIWKNGNH SRCDMYDVKP KFVSIGSVGS AFSGTRPVPI TLATAYKMQH GDKLKLQISH DLKIKIKIRE AAGTLYMTTG WKQFIYATGL RIGETVLFRM SSCSKARVMV LNRKGFIRCP IRTTSKSSSV QKKSLPATNQ AIKTRTFQHG STNNSRTGTN KRALDDMSFC HKTTLTAELR SYIKDIAYSL EESNKFYIVR MNRMFMEQNR VVKFLKTYPS PYAHTYHLTF TFVAQYFAKE FSKKYI // ID A0A0D3FV40_9ORYZ Unreviewed; 194 AA. AC A0A0D3FV40; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G10380.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G10380.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G10380.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10380.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G10380.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G10380.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G10380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G10380.1; OBART04G10380.1; OBART04G10380. DR Gramene; OBART04G10380.1; OBART04G10380.1; OBART04G10380. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 20587 MW; 27B15097088A9B62 CRC64; MASDPTELRC SSPESSGDAG AEDPAAVDAA EESGGEGGSG HIAAGTEAAP PRPPEPEPEK VARHGVLPLL GKPYFTCIMC KSHVQPPFQV VVPRSFAPLL PSRTTPATLS WRGRSWGMRF TGGRLIQRLE AGWRGFAVDN DLRLGDGCVF ELLVGGGGEQ ERVEFRVQVL RAEIPARIRG RAGGYTSATP IVID // ID A0A0D3FY07_9ORYZ Unreviewed; 699 AA. AC A0A0D3FY07; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G18910.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G18910.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G18910.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G18910.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G18910.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G18910.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G18910.1; OBART04G18910.1; OBART04G18910. DR Gramene; OBART04G18910.1; OBART04G18910.1; OBART04G18910. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 613 693 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 75741 MW; EF37E5E1B93EF9B1 CRC64; MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL SSMPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRNPPYA ELPLEGQIFT GPVFPPNPMA HDHHHHHGFP FLPFPDSSAQ PAGIQGARHA QFASPFPEFH IGNLQPNLML YAGIRLPPAD RAAPAPRPPR IIISTDLTIG SPGKPDDAAC SPSSGGKKID DTKPRGFLLF GQAILTEEQI KNGNSDGRPA SPNWDAEKAP NTSEGSDSGV TQGSPTKNTT PSWSLPYFGG NNISRGSEYE LNPGQCKVFV ESETVGRSLD LSALSSFEEL YACLSDMFSI GSDELRSHLV YRSPAGEVKH AGDEPFCAFV KSARKLRILT DAGSDNLGD // ID A0A0D3FYQ3_9ORYZ Unreviewed; 160 AA. AC A0A0D3FYQ3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G21030.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G21030.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G21030.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G21030.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G21030.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G21030.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G21030.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G21030.1; OBART04G21030.1; OBART04G21030. DR Gramene; OBART04G21030.1; OBART04G21030.1; OBART04G21030. DR OrthoDB; EOG09360S33; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 148 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 160 AA; 17974 MW; 3A90C6D3435A475A CRC64; MAARSGMGGG HQRQAQIGQP SGARRWLRRR FIGDGSTGMG LNMQYKIAHI AVSNLPTIPL YVYEIQMTNL TKGKMAFSLP FSKQYINNHL STPIDDLLVT LVGSAESFEM RLKKSKDKRA TFTTRWNKLV QANLFELGDV CVFLFTEVDD DLCITLEVLN // ID A0A0D3FZC8_9ORYZ Unreviewed; 427 AA. AC A0A0D3FZC8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G22880.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G22880.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G22880.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G22880.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G22880.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G22880.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G22880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G22880.1; OBART04G22880.1; OBART04G22880. DR Gramene; OBART04G22880.1; OBART04G22880.1; OBART04G22880. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 10 37 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 427 AA; 45609 MW; 348140EA0E4B96C7 CRC64; MEFATTSSRF SKEEEEEEEG EQEMEQEQDE EEEEAEASPR EIPFMTSAAA AATASSSSPT SVSPSATASA AASTSASGSP FRSSDGAGAS GSGGGGGGED VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS AANEKGLLLS FEDRTGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAA EATRDRLFID WKRRADVRDP HRFQRLPLPM TSPYGPWGGG AGAFFMPPAP PATLYEHHRF RQGFDFRNIN PAVPARQLVF FGSPGTGGVH QHPPFATAAA ATSASSPTPH YGAPPEPLTA GLPMVVDSVP HVNNPAAASK RVRLFGVNLD NPHPDGGQSS SGHDAGHDAN ALSLRMPGWQ RPAPLRSLEL PPHMPAGAAG AESSAASSPS SSSSSKREAH SSLDLDL // ID A0A0D3G1B2_9ORYZ Unreviewed; 900 AA. AC A0A0D3G1B2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G28590.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G28590.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G28590.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G28590.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G28590.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G28590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G28590.1; OBART04G28590.1; OBART04G28590. DR Gramene; OBART04G28590.1; OBART04G28590.1; OBART04G28590. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 797 881 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 900 AA; 99399 MW; 99E5D1D919B81138 CRC64; MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEIY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RTSPSPFVIP VARYNKATYM QPSVGMRFAM MFETEESSKR RYTGTVVGIS DYDPMRWPNS KWRNLQVEWD EHGYGERPER VSIWDIETPE NTLVFPLSTL NSKRQCLPGY GVSVPGMEIG SANMSSFPRA QGNPYGSLQH IPAVGSELAI MLLNQSGQTL GSPLSFHQSS YSSIIQNVKQ NYIPPLTVST SACLTKQESL PSDDAQHQFH MANMQNGDLE GSEVQPVIDS ISESKLNATS RDPRNTDSYT SRSTSEQNSK GEPRGKTRRS KKGLPHKTVS EKSDLSSAPS WICDNQQVGL ESKLVGCDEQ VNCGNIEDSS GALTQGNFVG QPHGHQVEQK GVLSPPKVES SKSPDGGKSV NSFPNQGCFS QFIDGLDWMT QPSYYQDSNV IQPAGVSENI FSSSADIPPS MIADTMETFQ ASCLSDCLPN SIQEFISSPD LNSLTFLSPD MQNLEVQLQH DGSNLPSTSN SFVQMSFSEE SASQSANLSG LHMESTHRSI NTTSCSQPMS TGGFDAGMYS KLPRLKESQI LSLPEIHTNS MGTSACSMDA TEYSLDRSAK PMKPPVRTYT KVQKQGSVGR SIDVTGFRNY HELRSAIACM FGLQGKLEHP GSSEWKLVYV DYENDVLLVG DDPWEEFINC VRCIRILSPS EVQQMSENGM HVLNDCIQAA // ID A0A0D3G1I7_9ORYZ Unreviewed; 838 AA. AC A0A0D3G1I7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G29160.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G29160.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29160.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G29160.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29160.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G29160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G29160.1; OBART04G29160.1; OBART04G29160. DR Gramene; OBART04G29160.1; OBART04G29160.1; OBART04G29160. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 739 823 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 838 AA; 93106 MW; 969F1BC1691B14C6 CRC64; MVAISELGLR VCASLVWSEE EMSSSSAASI GPPPPPAPPE EEKKCLNSEL WHACAGPLVC LPTVGTRVVY FPQGHSEQVA ASTNKEVEGH IPNYPNLPAQ LICQLHDVTM HADVETDEVY AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD IEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM YPSLFPLRVK HPWYSGVASL HDDSNALMWL RGVAGEGGFQ SLNFQSPGIG SWGQQRLHPS LLSSDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ QIINPDAQNI QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI QPDQSYQVPT SAVLPSPTSL PSHLREKFGF SDPNANSSSF ITSSSSDNML DSSFLQGSSK AVDLSRFNQP VASEQQQQQQ QQQAWKQKFM GSQSVSFGGS VLHNSPTSKD GSVENKIGRD VQNQSLFSPQ VDSSSLLYNM VPNLTSNVSD GNLSTIPSGS TYLQNAVYGC LDDSSGLLQN TGENDPATRT FVKVYKSGSV GRSLDITRFS NYAELREELG QMFGIKGQLD DPDRSGWQLV FVDRENDVLL LGDDPWESFV NSVWYIKILS PEDVHKMGKQ GNDPRYLS // ID A0A0D3G1I8_9ORYZ Unreviewed; 814 AA. AC A0A0D3G1I8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G29160.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G29160.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29160.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G29160.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29160.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G29160.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G29160.2; OBART04G29160.2; OBART04G29160. DR Gramene; OBART04G29160.2; OBART04G29160.2; OBART04G29160. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 799 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 814 AA; 90334 MW; 8FFFADC8E1FF5E63 CRC64; MVAISELGLR VCASLVWSEE EMSSSSAASI GPPPPPAPPE EEKKCLNSEL WHACAGPLVC LPTVGTRVVY FPQGHSEQVA ASTNKEVEGH IPNYPNLPAQ LICQLHDVTM HADVETDEVY AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD IEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPI NALMWLRGVA GEGGFQSLNF QSPGIGSWGQ QRLHPSLLSS DHDQYQAVVA AAAASQSGGY LKQQFLHLQQ PMQSPQEHCN LNPLLQQQIL QQASQQQIIN PDAQNIQTML SPSAIQQQLQ QLQQMQQVQN DQKQKIQPDQ SYQVPTSAVL PSPTSLPSHL REKFGFSDPN ANSSSFITSS SSDNMLDSSF LQGSSKAVDL SRFNQPVASE QQQQQQQQQA WKQKFMGSQS VSFGGSVLHN SPTSKDGSVE NKIGRDVQNQ SLFSPQVDSS SLLYNMVPNL TSNVSDGNLS TIPSGSTYLQ NAVYGCLDDS SGLLQNTGEN DPATRTFVKV YKSGSVGRSL DITRFSNYAE LREELGQMFG IKGQLDDPDR SGWQLVFVDR ENDVLLLGDD PWESFVNSVW YIKILSPEDV HKMGKQGNDP RYLS // ID A0A0D3G1P2_9ORYZ Unreviewed; 433 AA. AC A0A0D3G1P2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G29550.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G29550.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G29550.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29550.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G29550.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29550.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G29550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G29550.1; OBART04G29550.1; OBART04G29550. DR Gramene; OBART04G29550.1; OBART04G29550.1; OBART04G29550. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 297 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 297 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 48732 MW; 1C96A528F8DEB362 CRC64; MADTRGSTSS GGGDDRGREG HDDFAGGGQY NRYHRILEAV PSPLVRRENV VHHQYPTGLI HHPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN FQDLRLMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTHAKK AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSHN SANLTIRFNC REYRVILRKE LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE ECGFAISLLT KKT // ID A0A0D3G1P3_9ORYZ Unreviewed; 682 AA. AC A0A0D3G1P3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G29560.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G29560.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G29560.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29560.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G29560.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29560.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G29560.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G29560.1; OBART04G29560.1; OBART04G29560. DR Gramene; OBART04G29560.1; OBART04G29560.1; OBART04G29560. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 422 524 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 422 524 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 75362 MW; 38D9D74C93178294 CRC64; MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSFS LVSQYDLSLI ILFDRSSENF QDWVPSNNVA APHVPSAFQD WRQMCNGSAF MPFGQTAANS NGFYQNLTFN SWTSNNMPRN PVYTSFHPAA IEDHHAPLFH SNNHDIDPEF LGNRHLHGVD IAGAPPAKAT SPATAGGLLT NTAPATMSQI HARCRRRQIY RCCGLLPRAP PPSDPCAFAR AAITAAGSAR GLLSHLYGGL VFWLVGKRKL GEKRERKRKV VAGMTNFRMD QAFVPASSPF PPVSSSSHGF SSTKISNGPT YTKKAKKSNV KDPPIVFRRS DMESEKNDDN PDQIPVSEPP SMNQNGENLI IRFNCREYRV ILRKELTNSD VGNIGRIVMP KRDAEAHLPA LHQREGVTLK MDDFKFETTW NFKYRFWPNN KSRMYVLEST GGFVKHHGLQ TGDIFIIYKS SESGKFVVRG EKAIKPNAIM PVVDCSCKNE LNKSEECGSV PFTSTTYGES DGEDYSGDRS SPGAGEVADE GVRDAEPTPH TSFCMEAWRE GGETTSEAIA TSRHPQRRLR RRTPGAASAP RRSRRPAITI FRKPEFGWYC CAKINRKESE IREQVSKEKV TRRAPFWEKI PF // ID A0A0D3G1P4_9ORYZ Unreviewed; 540 AA. AC A0A0D3G1P4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART04G29560.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G29560.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G29560.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29560.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G29560.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G29560.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G29560.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G29560.2; OBART04G29560.2; OBART04G29560. DR Gramene; OBART04G29560.2; OBART04G29560.2; OBART04G29560. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 280 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 280 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 540 AA; 60681 MW; 5CE344764921B8DB CRC64; MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSFS LVSQYDLSLI ILFDRSSENF QDWVPSNNVA APHVPSAFQD WRQMCNGSAF MPFGQTAANS NGFYQNLTFN SWTSNNMPRN PVYTSFHPAA IEDHHAPLFH SNNHDIDPGW IKHLYLLLHL FHRCHHHPMD PPIVFRRSDM ESEKNDDNPD QIPVSEPPSM NQNGENLIIR FNCREYRVIL RKELTNSDVG NIGRIVMPKR DAEAHLPALH QREGVTLKMD DFKFETTWNF KYRFWPNNKS RMYVLESTGG FVKHHGLQTG DIFIIYKSSE SGKFVVRGEK AIKPNAIMPV VDCSCKNELN KSEECGSVPF TSTTYGESDG EDYSGDRSSP GAGEVADEGV RDAEPTPHTS FCMEAWREGG ETTSEAIATS RHPQRRLRRR TPGAASAPRR SRRPAITIFR KPEFGWYCCA KINRKESEIR EQVSKEKVTR RAPFWEKIPF // ID A0A0D3G227_9ORYZ Unreviewed; 522 AA. AC A0A0D3G227; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART04G30660.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART04G30660.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G30660.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART04G30660.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART04G30660.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART04G30660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART04G30660.1; OBART04G30660.1; OBART04G30660. DR Gramene; OBART04G30660.1; OBART04G30660.1; OBART04G30660. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000026960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 522 AA; 56703 MW; 8A7B27BE3B982D23 CRC64; MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APPRPAAAEL AEAESQEFRY YAKQLTQSDA NNGGGFSVPR LCADHIFPAL NLDDDPPVQS LTMGDLQGDS WEFRHIYRGT PRRHLLTTGW SKFVNAKQLV AGDTVVFMWC GAPAPERKLL VGVRRAARYS GESACNARGR VQPQEVMEAV RLAAEQAAFR VTYYPRHGAG EFVVPRVEVD KGLTTPWRCG MQVRAQVMEA EDTRRLAWLN GTLTNLRHQQ IWRTLEVEWD ASAASSSMKN RFVNPWQVQP VDFPPLPMGL KISNNNISAP VCNGDSLLVP PILMHPQPQP PADIQGARHN NGHAYADIPS SSTPSMVRTQ QLFPRDLQIL VPHTDIVTPQ NGSPPDNPVN TPLSASDGMK TIQLFGVTIT SPVQGDTNGA FASAQVNQVP EGVDDEPATE EASDTSLPDS LTNGHNQDGA RL // ID A0A0D3G916_9ORYZ Unreviewed; 306 AA. AC A0A0D3G916; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART05G20480.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART05G20480.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART05G20480.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G20480.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART05G20480.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G20480.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART05G20480.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART05G20480.1; OBART05G20480.1; OBART05G20480. DR Gramene; OBART05G20480.1; OBART05G20480.1; OBART05G20480. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000026960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34756 MW; 9E54C3A9BC3A62C0 CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TLASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA DEEAVGDKDT STEDAAEQDD SPNAEPLKGA KRRKLRGRRL WVFHKTITTL FVAATDRVFT IIGRFR // ID A0A0D3G9R7_9ORYZ Unreviewed; 712 AA. AC A0A0D3G9R7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART05G22670.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART05G22670.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G22670.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART05G22670.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G22670.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART05G22670.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART05G22670.1; OBART05G22670.1; OBART05G22670. DR Gramene; OBART05G22670.1; OBART05G22670.1; OBART05G22670. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000026960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 77325 MW; A7D04566B8214F94 CRC64; MRGARACPSS SLCGNSGYQK RQKPRQGKAP GPATPRWWSP EPPLLLPPPL VASALARLRL GGKVAFIDAA AAPLLLLTRS SSASLAALHR NQGQFGARRG GGRRRWADAA TDEVYARLAL VAEGEMLQRN FREGGGEDGA GEMEGCDAEK KPRMPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK TVRPSQELIA VDLHGTQWKF RHIYRGQPRR HLLTTGWSSF VNRKKLVSGD AVLFLRGDDG QLRLGVRRAV QLRNEALFEP VNSSDSKLRI LSSVASSLEN KSVFHICFNP RSGASEFIVP YWRLLKSLNH PFSIGMRFRV CYESEDANER SAGLISGISE VDPIRWPGSR WKCLLVRWDD STDSSHQNRV SPWEIERVGG SVSVTHSLSS GSKRTKLHFP QGSLDTPFLN GNGHPDSMGT ENFHRVLQGQ EFRGSRSHGV VCSESPGVPN FQSPDNRRFS ADMRGYMMPA SGPPQRNTEF TYQPIGFSES LGFPEVLQGQ EMSQVVPLFR GATFGARTQN DRVVSANSVH RSAAQSGLLA STLGHPISQF TLSSSKVSSP SSVLMFNQAT APNHETVGGT NNKGMHVSQF ASQEMLSETV TWPGTQRQTP SEITSNQFAL ARIPAPPSGA ESGLPKRDAG RSSCRLFGFS LTGNMLGEDG EGLDDGAIEA GCENPPVLEL FGHSHSTPGA LHALCAAAPL GM // ID A0A0D3GAT4_9ORYZ Unreviewed; 609 AA. AC A0A0D3GAT4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART05G25790.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART05G25790.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART05G25790.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART05G25790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART05G25790.1; OBART05G25790.1; OBART05G25790. DR Gramene; OBART05G25790.1; OBART05G25790.1; OBART05G25790. DR Proteomes; UP000026960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 609 AA; 67355 MW; 13C2460C73363BA7 CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACCRVVDVT LLADAATDEV YAQLSLVPEK EEVARRADDG EGEDGDGMKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA AQLKNGSAFP ALYNQCSNLG TLANVAHAVA TESVFNIYYN PRLSQSEFIV PYWKFMKSLS QPFSVGLRFK MRYESEDATE RRYTGIITGS GDTDPMWHGS KWKCLLVRWD DDAEFRRPNR VSPWEIELTS SVSGSHLSTP HSKRLKPCLP HVNPEYMVPR GGVCPDFAES AQFHKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH GRAAFHGPPA PALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RMVAEYQGDG GTDDSDIFIL DVGVGALIM // ID A0A0D3GAT5_9ORYZ Unreviewed; 686 AA. AC A0A0D3GAT5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART05G25790.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART05G25790.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART05G25790.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART05G25790.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART05G25790.2; OBART05G25790.2; OBART05G25790. DR Gramene; OBART05G25790.2; OBART05G25790.2; OBART05G25790. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000026960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 75528 MW; 4C542B65AAF99A93 CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACCRVVDVT LLADAATDEV YAQLSLVPEK EEVARRADDG EGEDGDGMKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA AQLKNGSAFP ALYNQCSNLG TLANVAHAVA TESVFNIYYN PRLSQSEFIV PYWKFMKSLS QPFSVGLRFK MRYESEDATE RRYTGIITGS GDTDPMWHGS KWKCLLVRWD DDAEFRRPNR VSPWEIELTS SVSGSHLSTP HSKRLKPCLP HVNPEYMVPR GGVCPDFAES AQFHKVLQGQ ELLGFKSHGG TAAATSQPCE ARHLQYIDER SCSSDASNSI LGVPRLGDRA PLGNPGFSYH CSGFGESQRL QKVLQGQELF RPYRGTLVDA SMGSNGFHQQ DSPRAPGVVN KWQAQLHGRA AFHGPPAPAL PSQSSSPPSV LMFQQANSKM PRLEFGHGQL DKHENDRRVR FGPSEGIERR EQRIPLQPYP TSGEVIDGQV TVEKSHSPGR HGKDGPDNKA VGTNSCKIFG ISLTEKVPAR EELDDGDANY SLQSLKQVPK SLGNSCATVH EQRPVVGRMV AEYQGDGGTD DSDIFILDVG VGALIM // ID A0A0D3GAT6_9ORYZ Unreviewed; 669 AA. AC A0A0D3GAT6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART05G25790.3, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART05G25790.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.3}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART05G25790.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.3}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART05G25790.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART05G25790.3; OBART05G25790.3; OBART05G25790. DR EnsemblPlants; OBART05G25790.5; OBART05G25790.5; OBART05G25790. DR Gramene; OBART05G25790.3; OBART05G25790.3; OBART05G25790. DR Gramene; OBART05G25790.5; OBART05G25790.5; OBART05G25790. DR Proteomes; UP000026960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 669 AA; 73894 MW; 6108C79A46C79F0A CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACCRVVDVT LLADAATDEV YAQLSLVPEK EEVARRADDG EGEDGDGMKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA AQLKNGSAFP ALYNQCSNLG TLANVAHAVA TESVFNIYYN PRLSQSEFIV PYWKFMKSLS QPFSVGLRFK MRYESEDATE RRYTGIITGS GDTDPMWHGS KWKCLLVRWD DDAEFRRPNR VSPWEIELTS SVSGSHLSTP HSKRLKPCLP HVNPEYMVPR GGVCPDFAES AQFHKVLQGQ ELLGFKSHGG TAAATSQPCE ARHLQYIDER SCSSDASNSI LGVPRLGDRA PLGNPGFSYH CSGFGESQRL QKVLQGQELF RPYRGTLVDA SMGSNGFHQQ DSPRAPGVVN KWQAQLHGRA AFHGPPAPAL PSQSSSPPSV LMFQQANSKM PRLEFGHGQL DKHENDRRVR FGPSEGIERR EQRIPLQPYP TSGEVIDGQV TVEKSHSPGR HGKDGPDNKA VGTNSCKIFG ISLTEKVPAR EELDDGDANY SLQSLKQVPK SLGNSCATVH EQRPVVGRVI DISTMDMMI // ID A0A0D3GAT7_9ORYZ Unreviewed; 592 AA. AC A0A0D3GAT7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART05G25790.4, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART05G25790.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.4}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART05G25790.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G25790.4}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART05G25790.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART05G25790.4; OBART05G25790.4; OBART05G25790. DR Gramene; OBART05G25790.4; OBART05G25790.4; OBART05G25790. DR Proteomes; UP000026960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 592 AA; 65721 MW; 042D70F310E19753 CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACCRVVDVT LLADAATDEV YAQLSLVPEK EEVARRADDG EGEDGDGMKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA AQLKNGSAFP ALYNQCSNLG TLANVAHAVA TESVFNIYYN PRLSQSEFIV PYWKFMKSLS QPFSVGLRFK MRYESEDATE RRYTGIITGS GDTDPMWHGS KWKCLLVRWD DDAEFRRPNR VSPWEIELTS SVSGSHLSTP HSKRLKPCLP HVNPEYMVPR GGVCPDFAES AQFHKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH GRAAFHGPPA PALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RVIDISTMDM MI // ID A0A0D3GC01_9ORYZ Unreviewed; 422 AA. AC A0A0D3GC01; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART06G00800.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART06G00800.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART06G00800.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G00800.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART06G00800.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G00800.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART06G00800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0D3GC01; -. DR EnsemblPlants; OBART06G00800.1; OBART06G00800.1; OBART06G00800. DR Gramene; OBART06G00800.1; OBART06G00800.1; OBART06G00800. DR OrthoDB; EOG09360KSB; -. DR Proteomes; UP000026960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR Pfam; PF02362; B3; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 303 401 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 303 401 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 45083 MW; 28F5E4E457370190 CRC64; MAPPSDSDDS APIPAGAISK LLIVIAMQTE ALPLVNKFHL VEAEESIFPK GAPWIRYHGN YKGLHVDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGADIG DVYLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE SAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL DKAVTEVMEL DTDPTKLKAK PIIKPKVEPC DDDDELPPPP PPASGSGEDW EATTPLAAGN PFFTALIAKS HLHPKFQMWI PPRFQHRLAE PEARTAAVLH SGGKSWATSY CGHLKMKKLD AGWSEFAVDN RLLVGDACVF ELVAMGATGG LEFQVQILRG GLPSEVVTSK GLTSDQPILI VD // ID A0A0D3GDT1_9ORYZ Unreviewed; 1055 AA. AC A0A0D3GDT1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART06G06150.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART06G06150.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G06150.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART06G06150.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G06150.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART06G06150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART06G06150.1; OBART06G06150.1; OBART06G06150. DR Gramene; OBART06G06150.1; OBART06G06150.1; OBART06G06150. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000026960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 940 1024 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1055 AA; 116917 MW; 7DF9315023D745CB CRC64; MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSS LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG SDSIGQLKQS PLQQDPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPSA SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG // ID A0A0D3GIY5_9ORYZ Unreviewed; 410 AA. AC A0A0D3GIY5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART06G21860.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART06G21860.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART06G21860.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G21860.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART06G21860.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G21860.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART06G21860.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART06G21860.1; OBART06G21860.1; OBART06G21860. DR Gramene; OBART06G21860.1; OBART06G21860.1; OBART06G21860. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000026960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 348 410 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 348 410 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 45546 MW; 050FCD2AAC20F29A CRC64; MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE ESGRRAAAVL VVGPLGKVWR VXLRRSPAGD GEAWLGGGWS ELAAAHGLGE GWGVVLRLER RGVASLRVFD PGFCLARFCT PHAGMRTKDR PRFIKLLQQE DLEKMKIPEK FVQQQLTETY TNNHQNAIIV CPLGKFWRVE LQREQPDVLL RDGWAPFLAA HDLSEGNILL VRYEGNMVFT VEVFLQNGCL KEYKTAALYL TDGTEGPSNA PQQSAAKVGV SPVKRKRTRR IEGTCLEGPN RKSRASPISV KVEQHKKHVS IVSQNSFTKE MTAYSIHSLL SVRGTFCSQI GLLEACAITL KISMKKKGSW RVAFKTANTY GYINGPGWRK FCLENEVKEG DRLTFNAIET TVWHVVIVHC // ID A0A0D3GJW2_9ORYZ Unreviewed; 917 AA. AC A0A0D3GJW2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART06G24660.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART06G24660.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G24660.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART06G24660.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G24660.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART06G24660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART06G24660.1; OBART06G24660.1; OBART06G24660. DR Gramene; OBART06G24660.1; OBART06G24660.1; OBART06G24660. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 786 870 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 917 AA; 101778 MW; 76EC5193017C8EC1 CRC64; MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELASANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL LIQGGIPSLQ GENDSTAIPY STSNFLSPSQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ ESRSLSTGIA SVGSVEF // ID A0A0D3GK33_9ORYZ Unreviewed; 698 AA. AC A0A0D3GK33; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART06G25230.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART06G25230.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G25230.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART06G25230.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G25230.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART06G25230.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART06G25230.1; OBART06G25230.1; OBART06G25230. DR Gramene; OBART06G25230.1; OBART06G25230.1; OBART06G25230. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75674 MW; 2CC72F896F8DB3C5 CRC64; MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGATAAAAA QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL PPPPPPTPAA GGNYGGFSMF LRGDDDGNKM AAAARGKVRA RVRPEEVVEA ANLAVSGQPF EVVYYPRAST PEFCVKAGAV RAAMRTQWFA GMRFKMAFET EDSSRISWFM GTVSAVQVAD PIRWPNSPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLAPFSPP RKKLCVPLYP ELPIDGQFPT PMFHGNPLAR GVGPMCYFPD GTPAGIQGAR HAQFGISLSD LHLNKLQSSL SPHGLHQLDH GMQPRIAAGL IIGHPAARDD ISCLLTIGSP QNNKKSDGKK APAQLMLFGK PILTEQQISL GDAASVAVKK SSSDGNAENT VNKSNSDVSS PRSNQNGTTD NLSCGGVPLC QDNKVLDVGL ETGHCKVFMQ SEDVGRTLDL SVVGSYEELY RRLADMFGIE KAELMSHVFY RDAAGALKHT GDEPFSEFTK TARRLNILTD TSGDNLAR // ID A0A0D3GKI2_9ORYZ Unreviewed; 1160 AA. AC A0A0D3GKI2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART06G26550.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART06G26550.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G26550.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART06G26550.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART06G26550.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART06G26550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART06G26550.1; OBART06G26550.1; OBART06G26550. DR Gramene; OBART06G26550.1; OBART06G26550.1; OBART06G26550. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1026 1110 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 596 625 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1160 AA; 128223 MW; B362295FB4E3B42B CRC64; MMKQAQQQPP PPPTSSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFV NTAMQSEYLR SLSNPNMQNL GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ QQQQQQQQQQ QQQQQQKLLQ QQQQQLLLQQ QQQLSKMPAQ LSSLANQQFQ LTDQQLQLQL LQKLQQQQQS LLSQPAVTLA QLPLIQEQQK LLLDMQQQLS NSQTLSQQQM MPQQSTKVPS QNTPLPLPVQ QEPQQKLLQK QAMLADTSEA AVPPTTSVNV ISTTGSPLMT TGATHSVLTE EIPSCSTSPS TANGNHLLQP ILGRNKHCSM INTEKVPQSV APMSVPSSLE AVTATPRMIK DSPKLNHNVK QSVVASKLAN AGTGSQNYVN NPPPTDYLET ASSATSVWLS QNDGLLHQNF PMSNFNQPQM FKDAPPDAEI HAANTSNNAL FGINGDGPLG FPIGLGTDDF LSNGIDAAKY ENHISTEIDN SYRIPKDAQQ EISSSMVSQS FGASDMAFNS IDSTINDGGF LNRSSWPPAA PLKRMRTFTK VYKRGAVGRS IDMSQFSGYD ELKHALARMF SIEGQLEERQ RIGWKLVYKD HEDDILLLGD DPWEEFVGCV KCIRILSPQE VQQMSLEGCD LGNNIPPNQA CSSSDGGNAW RARCDQNSGN PSNGSYEQFE // ID A0A0D3GN19_9ORYZ Unreviewed; 665 AA. AC A0A0D3GN19; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G05350.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G05350.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05350.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G05350.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05350.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G05350.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G05350.1; OBART07G05350.1; OBART07G05350. DR Gramene; OBART07G05350.1; OBART07G05350.1; OBART07G05350. DR OrthoDB; EOG093603HK; -. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 440 541 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 440 541 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 72790 MW; 690E022F149FDD94 CRC64; MAQPPDAAAA AVPPPVVIDR DVWHACAVPY SGVLPGVGTL VYYIPHGHIE QCAEDPALLL SRLPDPIHPV PCTVADLVLD VDAESGEAYT TISLLPGSHD DTTARRQVPA HGEPGLRFFE KQLSPADVTS NALVLPAGAE HVLPPLDIAA YQTARLFDVR DLRGKRFEFV HIWDKKRCRY MLGDLGVNDN DGWRGFVKAK RLATRDTVVF MRRGGGDGDG DGELLVGVRR APRARGGHHP RPGVEDNKVV SEVWLAMQGV TPFEVTYYPR EGTFEFVVSR DEYIGFSFSP FYPFVPGTTV HLRMNPLQIA QSISGTVRTF DHLRPWRMLE VDWDQAASPI SYRIHRQVNS WQVLRQPQPA ATTSAVRIRD AIVATPQVQI MAPPRPPPPT TTTGMVPSDD SYAMISLFPG DCYVTHRPLP AARDPVGGQR EFCFFDKKLS PSDVAANGGG SGALFVIPKP SAAEHVLPRI PDLRVTDLQG GRWEFGHTWS DADTDRRSSS HTLAAGWSAF VKAKRLCVGD TVIFMRRRPG GEPLVGVRLL MNPDDARRRS QPPVYGTVRD VHSRSEWRML EVDWDRDSPL APTMNRRVNS WQVQPVQLAL PPQGSDEEAA AATTSTAHAG DATTSAPSLA LQLQTMASSS SSSAPIIPSR GSAFRIVNPR DGSQG // ID A0A0D3GN20_9ORYZ Unreviewed; 1601 AA. AC A0A0D3GN20; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G05360.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G05360.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05360.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G05360.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05360.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G05360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G05360.1; OBART07G05360.1; OBART07G05360. DR Gramene; OBART07G05360.1; OBART07G05360.1; OBART07G05360. DR OrthoDB; EOG0936037F; -. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 492 591 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 862 923 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1189 1288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 492 591 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 862 923 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1189 1288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1601 AA; 179462 MW; 7C42DFEF74DAEABE CRC64; MNQLWSAFNR AMWLACAAPN SGRLPAVGSM VFYFVDGHAE QFCQFPAPLL EQLAVPGPRV FLCTVAAVRL RADALTNEAY ADITLDPVAD HDVPRLLPAP APAAAAGGQQ QQLRYFVKTL MSSDAEYRDR FAVPMDVAKD VFPPLVDAKA VQPLIVKDLQ GSPMTFDYGR NGNRVTLAKV WKKFRDDMDF VDGDNVIFMR RRDDDELYVG VRRQRTLDKP LRTRRSRPPT PLPVAVQEVI AAAGRAAAGE QFTATYRSRQ DGDEFVVPRE VVEEGLRLRS RFTPEMEVEF VWALEDGAPP SVGPHGKITA IHDTTWMWRS VEIGWTGGSE MNKYANFWQV RLVGSDDFAS AAPPPPLSPK RLKSSEASAS ASAAAAKASP TSSAQAQQFS ITREMWRACA APKSGRLPAV GSFVYYFPDG HAQQCPSRPP EPLPGRVFLC KVTAVRLDAT RNELFATMSL IPVARDQAIQ PQAPADPGPS SPQVQTTLVS FVKPLTCTDA VKNRYRFIVP KREAAMGVLP QLQLNEHVPL YIKDMHGKEW VINYTWKEYT HMLSSGWIKF ANANRLVTGD NVVFMRSMDS GERYMGLRRT LKPEPVSVDE VIEAVWRAAR LEPFEVTYLS RQDGDEFVVP CGIVHNALRA KFTPGMVVNF VWAVEEDRLP NVGPQGKVIA IENYATSIWR MIQVEWPSCA GMNRYVNFWQ IREVLGESSF EASTCIVRSQ DYSPAPQRNL VNALQLPDGT KQLQQNKKSV SSSSTFRLFG KKMTPGVPPR RDTSGLSGQV SLFSHYLPHD EDDGQASDLY CEEPDRDDED GLAAILHDTW ELPTRPVLRN VFRRLPRNTD FDGATFLSKP WLALPCDGPM PLIVKDLQGS PMTFDYGRNG NRVTLAKVWK KFRDDMDFVD GDNVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL PVAVQEVIAA AGRAAAGEQF TATYRSRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA PPPPLSPKRL KSSEASPTSS AQAQQFSITR EMWRACAAPK SGRLPAVGSF VYYFPDGHAQ QCPSRPPEPL PGRVFLCKVT AVRLDATRNE LFATMSLIPV ARDQAIQPQA PADPGPSSPQ VQTTLVSFVK PLTCTDAVKN RYRFIVPKRE AAMGVLPQLQ LNEHVPLYIK DMHGKEWVIN YTWKEYTHML SSGWIKFANA NRLVTGDNVV FMRSMDSGER YMGLRRTLKP EPVSVDEVIE AVWRAARLEP FEVTYLSRQD GDEFVVPCGI VHNALRAKFT PGMVVNFVWA VEEDRLPNVG PQGKVIAIEN YATSIWRMIQ VEWPSCAGMN RYVNFWQIRE VLGESSFEAS TCIVRSQDYS PAPQRNLVNA LQLPDGTKQL QQNKKSVSSS STFRLFGKKM TPGVPPRRDT SGLSGQVSLF SHYLPHDEDD GQASDLYCEE PDRDDEDGLA AILHDTWELP TRPVLRNVFR RLPRNTDFDG ATFLSKPWLA LAVDGHNVVA DGRFHDIAFP HDRGARCVGS SRGWLVRGRG SRRRRGHRHH P // ID A0A0D3GN22_9ORYZ Unreviewed; 401 AA. AC A0A0D3GN22; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 12-APR-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART07G05360.3}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G05360.3, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G05360.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05360.3}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G05360.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05360.3}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G05360.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G05360.3; OBART07G05360.3; OBART07G05360. DR Gramene; OBART07G05360.3; OBART07G05360.3; OBART07G05360. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 221 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 401 AA; 44001 MW; 17CBF9124E1BEFC4 CRC64; MAAAAAALAD DGDGIVDRAM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAALRYFVK TLMISDFDFR IRFSAPMADA KGVFPPLVDA KAVQPLLVKD LHGSPMTFDY GRKSKRVTLA KVWKKFRDDM DFVDGDSVIF MRRRDDDDDD GELYVGVRSQ RTLERPLRNT MRRYRPPTPP QAAVQEAVLA AAGHAAAGER FTVAYRSRQD GDEFVVPREA VEEGLRARLT SLAEVEFVWA VEDGAPPIVG PRGKVTAIAT GQLWRNLEIV WDGNSEMDMS ANFWQVRPVE EVDISPSTPP PKRLKNCEID DTASTSVSVD NGDEEVPTMR QRLEALIPDN I // ID A0A0D3GN26_9ORYZ Unreviewed; 964 AA. AC A0A0D3GN26; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G05400.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G05400.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05400.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G05400.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G05400.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G05400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G05400.1; OBART07G05400.1; OBART07G05400. DR Gramene; OBART07G05400.1; OBART07G05400.1; OBART07G05400. DR OrthoDB; EOG093609VU; -. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 377 475 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 776 874 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 377 475 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 776 874 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 964 AA; 103593 MW; 4142229F7F4510CD CRC64; MPLPSCRRRE QRPRQSCFQN PECHLRLRAR QQRPPESAVQ STLSSSIYFS DHFVLTPPPF QITPTSIQNS TWLPIPTSPA VAAPPLPRWS PASVASTARA RRPPLPSLLP SLCRRSPRRR ARPLPAPPSN LGGVDGEGAP CAPPPSPIPA GPASSTVSAA SSAPATRDYL GGITGHRLGQ EDDSGGHEYT SVSGIHVPSS SGVAFVSFGQ CPQEMISTDL RLGLGPIAAT APLQPPPPPA AAAAAGSPSA TTPEPGHGEA TPTTSSSAQF QTQAQQVTRD MWMACAAPKS GRLPTVGSLV YYFPDGHAEQ CLSRPQEPLP GRIFLCKVTD VRLGAAATNE ALATISLVPI AADDHAFQLQ APADPDPAPA QSQSLVSFVK PLTYTDVTKN RFMVPKDDAA AGVLPHIQLN DDVPLRIKDL SGKEWAFNYT WKAHTRMFRN GWMEFSNANG LVTGDNAVFM RRGNGEMFMA VRRTRNRPAP FSVEEVIEAV WRAARREPFE VSYCSRQDGD EFVVPRDIVD DGLRARFAPG MAVNFVWAVE DGKLPTIGPQ GEVISIENYA TAPATRDYLG GITGHRLGQE DDSGGHEYTS VSGIHVPSSS GVAFVSFGQC PQEMISTDLR LGLGPIAATA PLQPPPPPAA AAAAGSPSAT TPEPGHGEAT PTTSSSAQFQ TQAQQVTRDM WMACAAPKSG RLPTVGSLVY YFPDGHAEQC LSRPQEPLPG RIFLCKVTDV RLGAAATNEA LATISLVPIA ADDHAFQLQA PADPDPAPAQ SQSLVSFVKP LTYTDVTKNR FMVPKDDAAA GVLPHIQLND DVPLRIKDLS GKEWAFNYTW KAHTRMFRNG WMEFSNANGL VTGDNAVFMR RGNGEMFMAV RRTRNRPAPF SVEEVIEAVW RAARREPFEV SYCSRQDGDE FVVPRDIVDD GLRARFAPGM AVNFVWAVED GKLPTIGPQG EVISIENYAT SIGA // ID A0A0D3GNW5_9ORYZ Unreviewed; 217 AA. AC A0A0D3GNW5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART07G07940.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G07940.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G07940.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G07940.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G07940.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G07940.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G07940.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G07940.1; OBART07G07940.1; OBART07G07940. DR Gramene; OBART07G07940.1; OBART07G07940.1; OBART07G07940. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 24610 MW; 1F1DA2B80C44495D CRC64; MVKIKTASQD YLPIPVAVTK ASRLKHGRTL KLMTAHGLKI RVKVAEARDK LYMTIGWKEF IQETGLKMGE SRSVVFRTLS KSRLNVIIFN KEGYSRCPIP DKAAKALINN QSSSAPSFST KSTAPRHPSS TNVEESTKLN RTKTNTSNSA NTKRIVKDMC CYNKRMKLSS EVKNYVRDIA QFLDYSSKFY IVTIKNIHEV RQGGKIFHLL SIYSLEK // ID A0A0D3GPI4_9ORYZ Unreviewed; 1379 AA. AC A0A0D3GPI4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART07G09910.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G09910.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G09910.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G09910.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G09910.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G09910.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G09910.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G09910.1; OBART07G09910.1; OBART07G09910. DR Gramene; OBART07G09910.1; OBART07G09910.1; OBART07G09910. DR OrthoDB; EOG093600LR; -. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.20.25.80; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR003657; WRKY_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF03106; WRKY; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF118290; SSF118290; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50811; WRKY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1350 1379 WRKY DNA-binding. FT {ECO:0000259|PROSITE:PS50811}. FT DNA_BIND 151 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1379 AA; 155303 MW; E9583DA7C0790630 CRC64; MSGYWRRRRS RKPANLEAGN TEGEQREQAD HEILRASRNI SDGFSDPEDS IAASYPYRSN SAGSFANYLG LDTFGSTLPA SSSLHTWGFR RATDPPDSDQ ISKSKTSAVG VGLDQDQGEE PPPQAPGDAD DDVGGGGGDA AKVIIEKEHM FDKVVTPSDV GSLNRLVIPR QHAECYFPRD VAANEKGGGV LLRFEDRAGK PWRFRYSYWN SSQSYVLTKG WSRFVRENGL NAGDTVSFYR GATEATRDRL FIDSKRKMHH INRLFQLLVR VRTMVSSFGE AGSPPPPPNS PLSTAQNFTY KALKDCLQDL LYYNLLSIMG RNHKSQSTSS RFACGMDAKI RYTIPKLDAL IQFPSLSLPD PVLGTFAAAT LLSNCIFLCR GVLGIMGFLR SENMKEEHRM LQAPAFDDLN YSAQDRITRM KEQTMPSSLS DPIYLLPTAI RNLLYLDLSN CSDIVQLPPS LGSSFHMLSA LNLSCCYSLR ALPDSLVCLY DLQILLLPFC HNLQNLPVSF GDLSNLRLLD LSGCRSLRLL PDSFVNLGSL ENLNLSDCIR LKGIPQPFGN LRKLEYLNFA GCYRVDLHDS FTDLKRHLDL SRWWKYNRVH TQCNLKSYRC LQQIIINRLL SDGFDEGDIT SEQSLTSICI FGESGTGKTE LLHEIYNDQM IIEGFHLRIW INMCDEKRLL EKIIEFTTCA YCYDAPSSIL EETEHAGCGL DINNYHELTK VGWKIVEKCG SNPLYIKALS GLLCHSETAL SEIDSLAGGI VPALRLCYDL LPSHLKQCFK FCSLFPKDYV FVRHHIIQLW ISQGFVYPEE GSQPEDTGLQ YFNELFCRSF FQHCPFSNDH GDKFVMHELF HDLARSISKD ESLSSEDPFF SLPENICHLS LVISDSNTVV LTKEHRHLQS LMVVRRSASE YSSSFVPLLK ILGLNDLLMK CGFLRALNLS CTTIVDLPGS IGRMKHLRFL AMNNTKIKSL PTEIGQLNAL QTLELKDCCC LIELPESTKN LTKLRHLDVQ KEPGNIHVSM PSGLGQLTDL QTLTVFNIGD DLSHCSIRDL KNLSGLRGHV HITGLQNITA GDDAKEANLV GKQFLQALTL EWCCSSEEME DEGDKETANQ VLQNLQPNTS IQELAIQNYP GNSFPNWIKD SGLCMLVSIT IDNSQDCNEI PYLGDLPCLK FLFIQKMYAV ENFGQRSNSL TTDGKHAPGF PSLEILNLWE MYSLQFWNGT RYGDFPQLRR LSISRCPKLS NLPPLISLLY LSFHCGDKLP ALSEFPSLKS LKIEGFQKLK SVSFCPEMPM LQKLEISDCK GLVSIDAPLL SVSNLKVVRC PKLHFGGSWL EGCLMWEEFK RDKCTIKYLL VKTMKDDGWN WRKYGQKDIL GSKYQRSKK // ID A0A0D3GSF7_9ORYZ Unreviewed; 847 AA. AC A0A0D3GSF7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART07G18780.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G18780.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G18780.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G18780.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G18780.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G18780.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G18780.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G18780.1; OBART07G18780.1; OBART07G18780. DR Gramene; OBART07G18780.1; OBART07G18780.1; OBART07G18780. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 345 446 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 600 650 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 345 446 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 847 AA; 94177 MW; 3CC369DB5A227123 CRC64; MHGVFCFSHS FEHGGFCETF HLEVAGWRNC ESCGKRLHCG CIVSVHAFVH LDAGGVECVM CARKSHAAMA PSQIWSSSMH MAQNVADRKD NFVKSWRPPA GQFSSQWRQN NMWSMSTMQS DLQQRLAFEF DRPSGSEKLL PGRTFIHAHE KKFDDMHDRS TTPAGMNQIM RERYANGHTQ HTTLDPTYAY TLYHREGTNP NLHDHSHHAG ENDHLTARKG VTSDPCSSVS TTFKLDSHHP SILKDDPSAV PAGLSPNFSS ANGPKDHIRI GPTQQQQQMA SSSLQKQFYS HSVIDNDFQA QLRNGRPRMD AKARSQLLPR YWPRITDQEL QHLSGDSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPAISQAEGL PLKVQDATGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RIDPEGKLVM GFRKATNLSA EQDQPTKPAN GVPPPPEANN KVVVPDSSPN AAVPRPIKVN TESKSSSPVE QATACKIDKG ALPQKEGPGT SSSSPLPVKR KATSVGPKIK RFRMDSEESM ELKITWEEAQ ELLRPPPKAP SIVVVDGHEF EEYEEPPILG RRTYFVTDQS GENHQWAQCE DCSKWRKLPV DALLPSKWTC SDNKWDSERS SCDSAQEINM EELGEMIPIK PGAAKKTKGK VDTDNIDVSD GLDTLANLAI LGEGESLPSQ PTTRHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCMTV RRRFRTLMMR REKRQQSEKD SGVPRKREPG QSSEPVPQSG SGAHPTSTSS PPQRADTNGE GPEDMSIDNK RTSSPVKNQI DLNSQPERED EQSPKSDATR LLRDNPT // ID A0A0D3GSF8_9ORYZ Unreviewed; 829 AA. AC A0A0D3GSF8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART07G18780.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G18780.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G18780.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G18780.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G18780.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G18780.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G18780.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G18780.2; OBART07G18780.2; OBART07G18780. DR Gramene; OBART07G18780.2; OBART07G18780.2; OBART07G18780. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 345 446 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 600 650 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 345 446 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 829 AA; 92348 MW; 804A76AB4CD7BA01 CRC64; MHGVFCFSHS FEHGGFCETF HLEVAGWRNC ESCGKRLHCG CIVSVHAFVH LDAGGVECVM CARKSHAAMA PSQIWSSSMH MAQNVADRKD NFVKSWRPPA GQFSSQWRQN NMWSMSTMQS DLQQRLAFEF DRPSGSEKLL PGRTFIHAHE KKFDDMHDRS TTPAGMNQIM RERYANGHTQ HTTLDPTYAY TLYHREGTNP NLHDHSHHAG ENDHLTARKG VTSDPCSSVS TTFKLDSHHP SILKDDPSAV PAGLSPNFSS ANGPKDHIRI GPTQQQQQMA SSSLQKQFYS HSVIDNDFQA QLRNGRPRMD AKARSQLLPR YWPRITDQEL QHLSGDSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPAISQAEGL PLKVQDATGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RIDPEGKLVM GFRKATNLSA EQDQPTKPAN GVPPPPEANN KVVVPDSSPN AAVPRPIKVN TESKSSSPVE QATACKIDKG ALPQKEGPGT SSSSPLPVKR KATSVGPKIK RFRMDSEESM ELKITWEEAQ ELLRPPPKAP SIVVVDGHEF EEYEEPPILG RRTYFVTDQS GENHQWAQCE DCSKWRKLPV DALLPSKWTC SDNKWDSERS SCDSAQEINM EELGEMIPIK PDGLDTLANL AILGEGESLP SQPTTRHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM MRREKRQQSE KDSGVPRKRE PGQSSEPVPQ SGSGAHPTST SSPPQRADTN GEGPEDMSID NKRTSSPVKN QIDLNSQPER EDEQSPKSDA TRLLRDNPT // ID A0A0D3GUZ5_9ORYZ Unreviewed; 911 AA. AC A0A0D3GUZ5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART07G26400.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G26400.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G26400.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G26400.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G26400.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G26400.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G26400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART07G26400.1; OBART07G26400.1; OBART07G26400. DR Gramene; OBART07G26400.1; OBART07G26400.1; OBART07G26400. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 635 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100025 MW; 65F1DA35761840A3 CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAITDK FGSRPDEGSL QFLKRGRNIG SKSRRLSMDA EEAWELKLYW DEVQELLRPA PTAKPTVVMI EDYEIEEYDE PPVFAKRSIF TIRSTGEQDQ WIQCDDCSKW RRLPLNVIVA SKWTCADNTI DSKSCSCSAP EELTPKELHI VLQQYEDMRR RRNSFGFKQN IPEMDAVSLD AFATAAVYGD VGNQGSPSVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKKIAWM NRDEPEGSSL SRSPQTVDTT RDGDVTMFDK VDINKGHIDL NFHPTAVRDE ERHGGQPRVS MVSLLEVANR PLENYMKQNG LTSLAGEQGS SSTCTGAATV PQPALVESEE RTSNNDGGRV ATAEQPESMA VDEAGDNQPD KAAGDSAAAL A // ID A0A0D3GUZ6_9ORYZ Unreviewed; 949 AA. AC A0A0D3GUZ6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART07G26400.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G26400.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART07G26400.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G26400.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART07G26400.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G26400.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART07G26400.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0D3GUZ6; -. DR EnsemblPlants; OBART07G26400.2; OBART07G26400.2; OBART07G26400. DR Gramene; OBART07G26400.2; OBART07G26400.2; OBART07G26400. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000026960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 623 673 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 949 AA; 104070 MW; 42E00159DD64FB3B CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK QRQSEREEAE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRD GDVTMFDKVD INKGHIDLNF HPTAVRDEER HGGQPRVSMV SLLEVANRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ PALVESEERT SNNDGGRVAT AEQPESMAVD EAGDNQPDKA AGDSAAALA // ID A0A0D3GVE7_9ORYZ Unreviewed; 315 AA. AC A0A0D3GVE7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G00060.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G00060.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G00060.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G00060.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G00060.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G00060.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G00060.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G00060.1; OBART08G00060.1; OBART08G00060. DR Gramene; OBART08G00060.1; OBART08G00060.1; OBART08G00060. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 206 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 206 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 34643 MW; 04B8FE064E584E53 CRC64; MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PFPNPFPAPS SGFADWSAST SAFTSLAAHS STAPSNAVHY SFSPCYAFWT HYMLNKNAYP TSFPAPHDDH LRLANNNHPR DAPGPASSYG VESFTTPSMA PNICTHMPPI EGPISAKEDK KPEILPRVVK SSDELETRNS NVEFHSETVG TLPESKQGHD SRATKLLNSG EYQVILRKEL TKSDVGNVGR IVLPKKDAEA SLPPLLQRDP LILHMDDMVL PVTWKFKYRY WPNNKSRMYI LDSAGEFLKT HGLQAGDVII IYKNLAPGKF IIRGEKAIHQ QTTNP // ID A0A0D3GVE8_9ORYZ Unreviewed; 362 AA. AC A0A0D3GVE8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G00060.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G00060.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G00060.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G00060.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G00060.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G00060.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G00060.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G00060.2; OBART08G00060.2; OBART08G00060. DR Gramene; OBART08G00060.2; OBART08G00060.2; OBART08G00060. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 253 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 253 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 362 AA; 39944 MW; 85F4D3718E8CF616 CRC64; MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PFPNPFPAPS SGAEPPHPHN HNHNHNHNHN THNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF TSLAAHSSTA PSNAVHYSFS PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTTPSMAPNI CTHMPPIEGP ISAKEDKKPE ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT NP // ID A0A0D3GYY3_9ORYZ Unreviewed; 417 AA. AC A0A0D3GYY3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G10540.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G10540.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G10540.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G10540.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G10540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G10540.1; OBART08G10540.1; OBART08G10540. DR Gramene; OBART08G10540.1; OBART08G10540.1; OBART08G10540. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 321 414 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 321 414 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 417 AA; 47234 MW; 6A0618C890979A55 CRC64; MGFWAVGGCG RERETSRAAA ESSRGRGDGR RRRPRSRRRR DEQDYRNLDD SQKHFLLTMM GDFQHEMIIP KEFVQRLKGD IPGEIQLETR NRNSHTVRVD KTQEKVIFTE GWAQFVKTFD LQMGDSMMFR FNGNSQFDVI IVDQIGREKA CSAVVDDSQN PNVQERRVDA TETLNSSRAH SQPMPMQSTT ETVNHSHARP CPMHTAVDCM PLSHAHPQPM PMQFPTETVN HCHAPTGPME MPLENVALSH AHARPLQMQS QPTDRLTQVQ RGYSLSSKDQ DCRVGVIPDP IIGQKTILSR VQVNVVKRKI QNIGSQIPIF VSVIGKNNAS GRISSLSIAN RYVDNYLQDE KTICLSRLGD KWNIRLSDSS GNRRMVGGCR KFAEDNDVGV GDICLFELLK NHKCTMKVHI IRAKDIC // ID A0A0D3GYY4_9ORYZ Unreviewed; 435 AA. AC A0A0D3GYY4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G10540.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G10540.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G10540.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G10540.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G10540.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G10540.2; OBART08G10540.2; OBART08G10540. DR Gramene; OBART08G10540.2; OBART08G10540.2; OBART08G10540. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 339 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 339 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 435 AA; 48997 MW; B8418B14A8BFBAE6 CRC64; MGFWAVGGCG RERETSRAAA ESSRGRGDGR RRRPRSRRRR DEQDYRNLDD SQKHFLLTMM GDFQHEMIIP KEFVQRLKGD IPGEIQLETR NRNSHTVRVD KTQEKVIFTE GWAQFVKTFD LQMGDSMMFR FNGNSQFDVI IVDQIGREKA CSAVVDDSQN PNVQERRVDA TETLNSSRAH SQPMPMQSTT ETVNHSHARP CPMHTAVDCM PLSHAHPQPM PMQFPTETVN HCHAPTGPME MPLENVALSH AHARPLQMQS QPTDRLTQVQ RGNSSKGNMT TMSSSSMSSG YSLSSKDQDC RVGVIPDPII GQKTILSRVQ VNVVKRKIQN IGSQIPIFVS VIGKNNASGR ISSLSIANRY VDNYLQDEKT ICLSRLGDKW NIRLSDSSGN RRMVGGCRKF AEDNDVGVGD ICLFELLKNH KCTMKVHIIR AKDIC // ID A0A0D3GYY5_9ORYZ Unreviewed; 388 AA. AC A0A0D3GYY5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G10540.3}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G10540.3, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G10540.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.3}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G10540.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.3}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G10540.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G10540.3; OBART08G10540.3; OBART08G10540. DR Gramene; OBART08G10540.3; OBART08G10540.3; OBART08G10540. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 388 AA; 43984 MW; 7F64B000360D1BEF CRC64; MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV QRGYSLSSKD QDCRVGVIPD PIIGQKTILS RVQVNVVKRK IQNIGSQIPI FVSVIGKNNA SGRISSLSIA NRYVDNYLQD EKTICLSRLG DKWNIRLSDS SGNRRMVGGC RKFAEDNDVG VGDICLFELL KNHKCTMKVH IIRAKDIC // ID A0A0D3GYY6_9ORYZ Unreviewed; 406 AA. AC A0A0D3GYY6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G10540.4}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G10540.4, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G10540.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.4}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G10540.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10540.4}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G10540.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G10540.4; OBART08G10540.4; OBART08G10540. DR Gramene; OBART08G10540.4; OBART08G10540.4; OBART08G10540. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 310 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 310 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 45747 MW; 1684E70E424EDFE6 CRC64; MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV QRGNSSKGNM TTMSSSSMSS GYSLSSKDQD CRVGVIPDPI IGQKTILSRV QVNVVKRKIQ NIGSQIPIFV SVIGKNNASG RISSLSIANR YVDNYLQDEK TICLSRLGDK WNIRLSDSSG NRRMVGGCRK FAEDNDVGVG DICLFELLKN HKCTMKVHII RAKDIC // ID A0A0D3GYY9_9ORYZ Unreviewed; 168 AA. AC A0A0D3GYY9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G10570.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G10570.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G10570.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10570.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G10570.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10570.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G10570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G10570.1; OBART08G10570.1; OBART08G10570. DR Gramene; OBART08G10570.1; OBART08G10570.1; OBART08G10570. DR OrthoDB; EOG093616NI; -. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 18911 MW; B3A807E618A267BF CRC64; MICLSLTKGK LSAGGNGCSE NKKHGASNES LHNRKSNDSP YVLPHRSHLS PFQEKVVLEK IEAIRCEVPI CVAIMKDYNV DYSSRKCCLL CMGNTWETKM IVSGNLTRWF LTGGWPKFAC DNRLRAGDIC LFELKEERRL TMALTRNIGC RAKGPFNMVS ADCRKDYA // ID A0A0D3GYZ0_9ORYZ Unreviewed; 586 AA. AC A0A0D3GYZ0; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART08G10580.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G10580.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G10580.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10580.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G10580.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G10580.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G10580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G10580.1; OBART08G10580.1; OBART08G10580. DR Gramene; OBART08G10580.1; OBART08G10580.1; OBART08G10580. DR OrthoDB; EOG093605DY; -. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 447 543 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 447 543 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 586 AA; 66372 MW; A1316739484BC5CE CRC64; MRKPCECCHT KMKFIWQMNG NFKHSMVIPD RFLSHFAAKS SGTITLETPN GNMYKVGVGK NMKRTLLLSG WEAFVHANSI QENDFLSFRY RGSSRFAVTV FDASGLEKVY FCCAAAGMKN ASNNVQKKAR TYIDILSSSD DHTTQSSASD TSDECQKARP NHHGKQAKKP SVSSSEDLSA EDGSSGHRSL ESEDLGRFSS PYYLPGHHKL AKEQKAELVA LVDKIQPEIC VLVIIMNKTN VKRHPDLVVP KDALLHFPHK NQIITLELPG KRKNWACKFR IRADGGGRHL YLGDFVHDNR ILEGDLCILQ PMTKNDASVF TMTVHLIRKE RTDIASSHQT RKINSGGISS SSHHDTTRHI HQLVCVCTNR MHVCNFIAHS FHLPVETCVV CIGEGSPDEN DSFKSDDLQT LTITDYVLSY KSYLSRAQTG QVIMLLGEIR PKKPVLVAVM RKKNVQSSSP FLEIPKEYAA AHFPNESVAI TLQMLGKNKK WHPRLCMEND KRIYMLRGHW LDFVLDNHVM EGDICLFEPM KGGKFLCSQF TSFAPRQLIA RVELVFKGLA QVMEEPIQRW HQVFILRKNQ LMVWKA // ID A0A0D3H287_9ORYZ Unreviewed; 1116 AA. AC A0A0D3H287; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G20780.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G20780.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G20780.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G20780.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G20780.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G20780.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0D3H287; -. DR EnsemblPlants; OBART08G20780.1; OBART08G20780.1; OBART08G20780. DR Gramene; OBART08G20780.1; OBART08G20780.1; OBART08G20780. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1116 AA; 123716 MW; 2C384F461515D1DC CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ QPHVQHQQIP QQLHHQQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGRQ LLKTDDVPST STSPSTNSNP VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEQRPATGQ DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP QEEMQMRLVG DFGDSFLPNQ ACSSSDGGHP WRITGD // ID A0A0D3H288_9ORYZ Unreviewed; 1083 AA. AC A0A0D3H288; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G20780.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART08G20780.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G20780.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART08G20780.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G20780.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART08G20780.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART08G20780.2; OBART08G20780.2; OBART08G20780. DR Gramene; OBART08G20780.2; OBART08G20780.2; OBART08G20780. DR Proteomes; UP000026960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 965 1049 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1083 AA; 120150 MW; 40F1F9B86CF4B672 CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQADPDTD EVYARMTLQP VSNVTQCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPRLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDAK QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTIYYN PRASTSEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK TSHWRNIQVA WDEAAPTERR TRVSLWEIEP IIAPFFIYPS PLFTAKRPRL PGMTDDETEM DGLLKRAMPW VGEEICKKDL NIQNSVVPGL NLAQWMNMQH SSSLPGTVVQ PELLNSLSGK PVQNLAAADL SRQISFHPQF LQQNNIQFNT ALVPQQNQQT EQLAKVIPTP NQLGSVIIPQ KVVQDCNSEQ RQHVVTQPVQ GSQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ LQQTQPSVQS HTVLQGGLQQ IQLLQQQQPH VQHQQIPQQL HHQQQQTQQL QPVQQVQQSV QEHQQIKIQP VHVSMDASMN TQVADHQMKL QLLKALQPQQ PLISEQQKML LDLQQQVINS QSAPQQCVQV TNQAISLHNS NTIQYPTQQK VQSHQVQDLT GNVIPNSKSD IATSMGASSL HVAGGRQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE QDTKPYQNVK QTVMIPKTTE QRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLLA NDIGTDKYMD QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH EKDVLLVGDD PWEDFVKCVR CIRILSPQEE MQMRLVGDFG DSFLPNQACS SSDGGHPWRI TGD // ID A0A0D3HES7_9ORYZ Unreviewed; 698 AA. AC A0A0D3HES7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART10G13410.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART10G13410.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART10G13410.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART10G13410.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART10G13410.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART10G13410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART10G13410.1; OBART10G13410.1; OBART10G13410. DR Gramene; OBART10G13410.1; OBART10G13410.1; OBART10G13410. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 603 683 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75592 MW; 1999EAD03D52ED79 CRC64; MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAVAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV AYYPRASTPE FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVAWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF VVSSAPAHDN ISCLLSIGTP QVAEKSDDRK TTPHIMLFGK AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA // ID A0A0D3HG22_9ORYZ Unreviewed; 316 AA. AC A0A0D3HG22; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART10G17010.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART10G17010.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART10G17010.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART10G17010.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART10G17010.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART10G17010.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART10G17010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART10G17010.1; OBART10G17010.1; OBART10G17010. DR Gramene; OBART10G17010.1; OBART10G17010.1; OBART10G17010. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000026960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 33536 MW; 6103A5C890F08ACA CRC64; MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAERY FPLDAAAGAG GGGGGGGGGG GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGSFM FPPTAAPPSH SHHHHQRHHP PLPSVPLCPW RDYTTAYGGG YGYGYGYGYG GGSTPASSRH VLFLRPQVPA AVVLKSVPVH VAAASAVQEA ATTTRPKRVR LFGVNLDCPA AMDDDDDIAG AASRTAASSL LQLPSPSSST SSSTAGKKMC SLDLGL // ID A0A0D3HIE5_9ORYZ Unreviewed; 283 AA. AC A0A0D3HIE5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G03590.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G03590.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G03590.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G03590.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G03590.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G03590.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G03590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G03590.1; OBART11G03590.1; OBART11G03590. DR Gramene; OBART11G03590.1; OBART11G03590.1; OBART11G03590. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 31516 MW; 0E0F0969FE8C0A10 CRC64; MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD VVHFERVRGS FGVGDRLFIG CRRRGDTAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS TSGGGSYPTS PANSYAYRAA DHDHGDMHHA DESPRDTDSP SFSAGSAPSR RLRLFGVNLD CGPEPEADTT AAATMYGYMH QQSSYAAMSA VPRAIHKKID YEI // ID A0A0D3HJ80_9ORYZ Unreviewed; 396 AA. AC A0A0D3HJ80; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G05830.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G05830.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G05830.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G05830.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G05830.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G05830.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G05830.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G05830.1; OBART11G05830.1; OBART11G05830. DR Gramene; OBART11G05830.1; OBART11G05830.1; OBART11G05830. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 383 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 383 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 396 AA; 44534 MW; 6F7BF3D45986485E CRC64; MGKGKGKGKG KEKEGDINCF GRSFFRVLLT LQSLERMKIP SSFNQCLQNQ PTGMVSLVDR SGNKWSAELT SDSEGFFFVH GWKEFVRDNS IQCGQFLVFT YDKRSQFSVT VFEPSGIDKI STFSAHPSKN VIIKTESDEG GMVTAAITTE KMAPALKENN GITGKRTRDV DYLMEDRVVV FKKSSEANVC ESSRRKRAGA SAGKSKVTST SHNSTRGSSC SSDEDNSSSK SPNPPFLMRF LSGEVSRRGV SKGQRQLTVI SQRRPVTEAE KDHALQRARE FKSKNPFAVQ IMMESYVYVG FFMNIPCEFV RECLPRTNKR ITLWDPQGKA WEVNYVYYSD RSVGSFSGGW GKFAVGNNLE KFDVCVFELV QKDNIKVHIY RVVPEITPHK LRSDPK // ID A0A0D3HME8_9ORYZ Unreviewed; 858 AA. AC A0A0D3HME8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G15270.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G15270.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G15270.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G15270.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G15270.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G15270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G15270.1; OBART11G15270.1; OBART11G15270. DR Gramene; OBART11G15270.1; OBART11G15270.1; OBART11G15270. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 724 807 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 858 AA; 94589 MW; 44C9B9CDED1C1A11 CRC64; MATAEVGGGG GEGDAAAAAV ARGGGGGGGG GGGEDALFTE LWSACAGPLV TVPRVGEKVF YFPQGHIEQV EASTNQVGEQ RMQLYNLPWK ILCEVMNVEL KAEPDTDEVY AQLTLLPESK QQEDNGSTEE EVPSAPAAGH VRPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG ELRVGVRRAM RQQANVPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPAEFVVP YDRYMESLKR NYSIGMRFKM RFEGEEAPEQ RFTGTIVGMG DSDPAGWPES KWRSLKVRWD EASSIPRPER VSPWQIEPAV SPPPVNPLPV PRTKRLRPNA TALPADSSAI AKEAATKVVV ESEPNGTQRT FQTQENATPK SGFGNSSELE SAQKSIMRPS GFDREKNNTP IQWKLGSDGR MQMSKPESYS EMLSGFQPPK DVQTPQGFCS LPEQITAGHS NFWHTVNAQY QDQQSNHNMF PSSWSFMPPN TRLGLNKQNY SMIQEAGVLS QRPGNTKFGN GVYAALPGRG TEQYSGGWFG HMMPNSHMDD TQPRLIKPKP LVVAHGDVQK AKGASCKLFG IHLDSPAKSE PLKSPSSVVY DGTPQTPGAT EWRRPDVTEV EKCSDPSKAM KPLDTPQPDS VPEKPSSQQA SRNMSCKSQG VSTRSCKKVH KQGIALGRSV DLTKFKGYEE LIAELDDMFD FNGELKGPKK EWMVVYTDNE GDMMLVGDDP WIQSFLNSEF CDMVHKIFIY TREEVQRMNP GTLNSRSEDS HANSMERGSV GREMRGCLST SSLNSENC // ID A0A0D3HMP2_9ORYZ Unreviewed; 471 AA. AC A0A0D3HMP2; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G16060.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G16060.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G16060.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G16060.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G16060.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G16060.1; OBART11G16060.1; OBART11G16060. DR Gramene; OBART11G16060.1; OBART11G16060.1; OBART11G16060. DR OrthoDB; EOG09360BW5; -. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004471; F:malate dehydrogenase (decarboxylating) (NAD+) activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.40.50.10380; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012301; Malic_N_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00390; malic; 1. DR SMART; SM01019; B3; 2. DR SMART; SM01274; malic; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 226 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 374 471 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 226 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 374 471 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 471 AA; 53321 MW; 28B9C9ADF485D341 CRC64; MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRGVRPS AVICVVKSAY SSKVRESLAA GRRGHWHSHS APLLWLLPGI GPEGVAIIMD PPTFSMVKLT TANQHYLLPF RPDEPALATS TIPSTHRHHQ QPVFSSDPEQ AKKIYTCSNL DIPSSVRIKP IGMDPPIFST VRLTTGNQHY VRVPSAITRT YQLEDEQNVK LVTAHELEVN IRIQKSSNKL YMTEGWEEFI EATGLQLGEY VVFKALSSSK IHVIVLNKNG HLRCPVPEDI SESEAAPNRP APSKRTVKEM HQAITEVKNY IKDIAQFLHR SNKFDITTIN ATFMKQDRVY FSKEFSRKYI APLARRKTLK IKVQLAGHPS STMILHKSTD DRYNLKAGWA HFAIKNNIEL GSLCIFHFYK TNQLQATIDV L // ID A0A0D3HMP3_9ORYZ Unreviewed; 433 AA. AC A0A0D3HMP3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G16060.2}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G16060.2, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G16060.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.2}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G16060.2, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.2}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G16060.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G16060.2; OBART11G16060.2; OBART11G16060. DR Gramene; OBART11G16060.2; OBART11G16060.2; OBART11G16060. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004471; F:malate dehydrogenase (decarboxylating) (NAD+) activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.40.50.10380; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012301; Malic_N_dom. DR Pfam; PF02362; B3; 2. DR Pfam; PF00390; malic; 1. DR SMART; SM01274; malic; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 188 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 336 433 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 188 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 336 433 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 49104 MW; 8BE973C0A9879D08 CRC64; MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRGVRPS AVICVVKSAY SSKVRESLAA GRRGHWHSHS APLLWLLPGI GPEGVAIIMD PPTFSMVKLT TANQHYLLPF RPDEPALATS TIPSTHRHHQ QPVFSSDPEQ AKKRVPSAIT RTYQLEDEQN VKLVTAHELE VNIRIQKSSN KLYMTEGWEE FIEATGLQLG EYVVFKALSS SKIHVIVLNK NGHLRCPVPE DISESEAAPN RPAPSKRTVK EMHQAITEVK NYIKDIAQFL HRSNKFDITT INATFMKQDR VYFSKEFSRK YIAPLARRKT LKIKVQLAGH PSSTMILHKS TDDRYNLKAG WAHFAIKNNI ELGSLCIFHF YKTNQLQATI DVL // ID A0A0D3HMP4_9ORYZ Unreviewed; 405 AA. AC A0A0D3HMP4; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G16060.3}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G16060.3, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G16060.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.3}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G16060.3, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.3}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G16060.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G16060.3; OBART11G16060.3; OBART11G16060. DR Gramene; OBART11G16060.3; OBART11G16060.3; OBART11G16060. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004471; F:malate dehydrogenase (decarboxylating) (NAD+) activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.40.50.10380; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012301; Malic_N_dom. DR Pfam; PF02362; B3; 2. DR Pfam; PF00390; malic; 1. DR SMART; SM01019; B3; 2. DR SMART; SM01274; malic; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 308 405 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 308 405 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 405 AA; 46019 MW; C9DA40E1A223097A CRC64; MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRVCVVK SAYSSKVRES LAAGRRGHWH SHSAPLLWLL PGYNYGSTDI LHGQADHGKS TLPAIGMDPP IFSTVRLTTG NQHYVRVPSA ITRTYQLEDE QNVKLVTAHE LEVNIRIQKS SNKLYMTEGW EEFIEATGLQ LGEYVVFKAL SSSKIHVIVL NKNGHLRCPV PEDISESEAA PNRPAPSKRT VKEMHQAITE VKNYIKDIAQ FLHRSNKFDI TTINATFMKQ DRVYFSKEFS RKYIAPLARR KTLKIKVQLA GHPSSTMILH KSTDDRYNLK AGWAHFAIKN NIELGSLCIF HFYKTNQLQA TIDVL // ID A0A0D3HMP5_9ORYZ Unreviewed; 412 AA. AC A0A0D3HMP5; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G16060.4}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G16060.4, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G16060.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.4}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G16060.4, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.4}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G16060.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G16060.4; OBART11G16060.4; OBART11G16060. DR Gramene; OBART11G16060.4; OBART11G16060.4; OBART11G16060. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004471; F:malate dehydrogenase (decarboxylating) (NAD+) activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.40.50.10380; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012301; Malic_N_dom. DR Pfam; PF02362; B3; 2. DR Pfam; PF00390; malic; 1. DR SMART; SM01019; B3; 2. DR SMART; SM01274; malic; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 315 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 167 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 315 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 46700 MW; 4C796EED0C5279C6 CRC64; MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRGVRPS AVICVVKSAY SSKVRESLAA GRRGHWHSHS APLLWLLPGY NYGSTDILHG QADHGKSTLP AIGMDPPIFS TVRLTTGNQH YVRVPSAITR TYQLEDEQNV KLVTAHELEV NIRIQKSSNK LYMTEGWEEF IEATGLQLGE YVVFKALSSS KIHVIVLNKN GHLRCPVPED ISESEAAPNR PAPSKRTVKE MHQAITEVKN YIKDIAQFLH RSNKFDITTI NATFMKQDRV YFSKEFSRKY IAPLARRKTL KIKVQLAGHP SSTMILHKST DDRYNLKAGW AHFAIKNNIE LGSLCIFHFY KTNQLQATID VL // ID A0A0D3HMP8_9ORYZ Unreviewed; 255 AA. AC A0A0D3HMP8; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G16060.7}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G16060.7, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G16060.7, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.7}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G16060.7, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.7}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G16060.7} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G16060.7; OBART11G16060.7; OBART11G16060. DR Gramene; OBART11G16060.7; OBART11G16060.7; OBART11G16060. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 158 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 255 AA; 29176 MW; 8F2B5ABADE5893B8 CRC64; MPDAIGMDPP IFSTVRLTTG NQHYVRVPSA ITRTYQLEDE QNVKLVTAHE LEVNIRIQKS SNKLYMTEGW EEFIEATGLQ LGEYVVFKAL SSSKIHVIVL NKNGHLRCPV PEDISESEAA PNRPAPSKRT VKEMHQAITE VKNYIKDIAQ FLHRSNKFDI TTINATFMKQ DRVYFSKEFS RKYIAPLARR KTLKIKVQLA GHPSSTMILH KSTDDRYNLK AGWAHFAIKN NIELGSLCIF HFYKTNQLQA TIDVL // ID A0A0D3HMP9_9ORYZ Unreviewed; 249 AA. AC A0A0D3HMP9; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G16060.8}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G16060.8, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G16060.8, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.8}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G16060.8, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G16060.8}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G16060.8} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G16060.8; OBART11G16060.8; OBART11G16060. DR Gramene; OBART11G16060.8; OBART11G16060.8; OBART11G16060. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 152 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 152 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 28591 MW; 449DFB4FCB36A89D CRC64; MDPPIFSTVR LTTGNQHYVR VPSAITRTYQ LEDEQNVKLV TAHELEVNIR IQKSSNKLYM TEGWEEFIEA TGLQLGEYVV FKALSSSKIH VIVLNKNGHL RCPVPEDISE SEAAPNRPAP SKRTVKEMHQ AITEVKNYIK DIAQFLHRSN KFDITTINAT FMKQDRVYFS KEFSRKYIAP LARRKTLKIK VQLAGHPSST MILHKSTDDR YNLKAGWAHF AIKNNIELGS LCIFHFYKTN QLQATIDVL // ID A0A0D3HP39_9ORYZ Unreviewed; 321 AA. AC A0A0D3HP39; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART11G20210.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART11G20210.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART11G20210.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G20210.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART11G20210.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART11G20210.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART11G20210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART11G20210.1; OBART11G20210.1; OBART11G20210. DR Gramene; OBART11G20210.1; OBART11G20210.1; OBART11G20210. DR OrthoDB; EOG09361GSV; -. DR Proteomes; UP000026960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 262 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 262 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 35043 MW; C7DC5523EA6D818D CRC64; MSICLISQPI PKFPKSAVPS AAAALSRPAR PLRRRCPPPR PSPPLPPRRC PTRPLRCRRV GAMKPGRRTS SAADPQIHQS PRLIAEAGKQ TVATSSSRYR AGKQTTATSS TRHRAGPSST SSPCHQAGPS SFFPSPHQAG AASSARRRGN DGSDGEDDTS DGGSDDVSDC SDGEAKERER AISMLASVRR ETIVCGPKGL RYAGGFHTHC WYGNDVTLTK DFQEKLACIV ALKEKRSIIP LRRYLHKYLE EPIDDFGVMN GEWTTVCSMK IGISPDDRVI LTSGWKTFVQ ANKLTMGATC AFEFFEQNEQ LNLVVYSLDL L // ID A0A0D3HRM6_9ORYZ Unreviewed; 277 AA. AC A0A0D3HRM6; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART12G03490.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART12G03490.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART12G03490.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G03490.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART12G03490.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G03490.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART12G03490.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART12G03490.1; OBART12G03490.1; OBART12G03490. DR Gramene; OBART12G03490.1; OBART12G03490.1; OBART12G03490. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000026960; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31065 MW; 17D1DE4E68EB9C2B CRC64; MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS YDPTSPANSY AYHRSVDQDH SDILHAGESQ RDADAKSSSA ASAPPPSRRL RLFGVNLDCG PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSVFFQF // ID A0A0D3HUG1_9ORYZ Unreviewed; 874 AA. AC A0A0D3HUG1; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART12G11990.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART12G11990.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G11990.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART12G11990.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G11990.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART12G11990.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART12G11990.1; OBART12G11990.1; OBART12G11990. DR Gramene; OBART12G11990.1; OBART12G11990.1; OBART12G11990. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026960; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 32 {ECO:0000256|SAM:SignalP}. FT CHAIN 33 874 Auxin response factor. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5002264352. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 681 765 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 874 AA; 97152 MW; 6128F5AB1E4CD4A5 CRC64; MMFLPCLCDL EERPDSFLLL LLLSSVLFQV EASTNQVAEQ QGAPLYNLPW KIPCKVMNVE LKAEPDTDEV YAQLTLLPEK QQDGNGSGNG YVSKDKVEEE EVVPPAATER PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSQH PPTQELVAKD LHGVEWRFRH IFRGQPRRHL LQSGWSVFVS AKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QANIPSSVIS SHSMHLGVLA TAWHAVNTGT MFTVYYKPRT SPSEFVVPRD LYEESLKRNH SIGMRFKMTF EGEEAAEQRF TGTIVGVGDS DPSGWADSKW RSLKVRWDEA ASVPRPDRVS PWQIEPANSP SPVNPLPAPR TKRARPNVLA SSPDLSAVNK EVASKVMANS QQNGLPRAFH SQENMNLRSR FGDSNELNTS QKLTMWSSGS NQEKNNVSVQ RELGSQSWMQ MRRPDGSSEI LSGFQPLKDT RNPLSSFPSQ ISGNRSNTWN TINVHYPDQN ANHNMYPGTW SLMPPNTGFG VNQQNYLMTP DITLPQRSLN AKFGGNGAFT SLRAHGIDQR SSGWLGHIEP SSHIDDASSS LIKPQPLVID HNVQKAKGSS CMLFGISLDS PAKPELLISP PSVAFDGKLQ QDALEEDECS DPSKTVNPLD GAQHDSATEK HQSCPDGTKN IQSKQQNGSS RSCKKVHKQG IALGRSIDLT KFTCYDELIA ELDQMFDFNG ELNSSSKNWM VVYTDNEGDM MLVGDDPWNE FCNMVHKIFI YTREEVQKMN PGALNSRSFV VCKNRRRHIH GRKESFRGVV VVAGALYVSG KPRSTPFVDG ACPGISCPLF VFDKFWVCFV EVLSYCMICP VVVKGAEAKL PRPVRLLACA LPPS // ID A0A0D3HWA3_9ORYZ Unreviewed; 1535 AA. AC A0A0D3HWA3; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART12G17530.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART12G17530.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART12G17530.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G17530.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART12G17530.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G17530.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART12G17530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART12G17530.1; OBART12G17530.1; OBART12G17530. DR Gramene; OBART12G17530.1; OBART12G17530.1; OBART12G17530. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000026960; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 9. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 448 546 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 600 699 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 724 817 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 936 1031 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1089 1185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1206 1303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1428 1527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 448 546 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 600 699 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 724 817 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 936 1031 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1089 1185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1206 1303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1428 1527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1535 AA; 175181 MW; 00A91203A43089B6 CRC64; MMNNTPCGHE GSMSYHDNHL QSPSESSLLF NISLPPHSPF QELSGVDSTS LLVSDPTNMQ QFCLRCSWTN PKRLAKPSLA IASLSHQHLA FDKTRCMFIL KIENDTLKTI LKMFAKNVQG LISGVAKLEV PDGKTYDVEI SKEHNELVFR SGWEVFAIAY ELEQGDILAF GYSGNSHFKV QIFNPSNCEK ELSCVVMNRS ISDDNHRQSP RRERMNKPST TCMDCITNHY WLHMDDRERY FFKVMMSVSD IKDELAIPKK FAANVRGKIP EQVRLEVSDG KMYNVQVTEE QDELVLRSGW ANFSSTYQLK HGDLLVFIHS GHSHFKVLIF DPSCTEKEFS CVVTDNTSHV HERSISHDNH LQSPRSEILG KNYSLCSSRK RSRMNPADYP SQRPDVPSSE DIKDPMSSGG LQKSKKSCYV LPMLYNMTSA QEAEVLALEK KIQPQIPLYI TAMDKTSVAS GSLVFSKDYA VRYLLDQNRT IKLCQSGGSK TWDISLDMDT DDLYALSTGW LDFFRGNLLQ EGDICVFEAS MSKRGVALTF HPFKESHCPK SSEYTLSTKS PTRRVPKRDY FATNLTNLTD QQERKVKNKI KSIQSDIPIF LSVMRSSNCT RQSSLCFSVK YASKYLPHKD QNMRLRLPET KYKCKAALHI DTSTNLHKLL KGWGKFVNDN KLEIHDICLF QLMKNKKKLT MTVHIIRKGE MEKSHRVCKN CVANHYWLHM DNHGKSFIKV MITDFKNGVT IPAKFARNFG GQMSGTVKLE TRNGKTYEVQ VAKELNNLVL RSGWERFASA YELEKGDILV FIYSGNSHFK VWIYDPSACE KELPCIITEQ LPRVQQRSIS HNNHTQLKRN AKSAKLYVDS SGHSKETSEI NPANSPSWKP TERVPSSEEL DEPVDLANVQ KATKSFYSLP RMCNMTSAQK AEVDALEKRI KPQIPFYITV MDKASATDGL LAISKDYAVS YLLDKNETIK LCHSGRSMTW DISLDIDTDD QYALSTGWLD FIRNNHLQEG DICVFEASKN KRGVALIFHP LKQSHHPKPP GCVPSTKFPR HGVSKPNYIV SRFTTLSGQL KIKVEAKVQA IQSEIPIFVA VMRESFIRGR SRYMCFSAKY AAKYLPREKN KIMRLRLPNK SYKYKAVFKI NNKVHKLGGG WGKFVDDNKI KLGDICLFQL MKNKKKLMMM VMGEKGCESC RKWQEHYYRE HMDVSRIRFF RLMTGDFAHG ISIPEKVAEI FSGQITKGFN LKSPSGETWR VGVAKVADEL ILKSGWEDFA KAHELQENDL LFFTCNGHGN GSCSFDVLIF DASGCEKVSC FFTGKKNSYM CKNFNSIGGQ VAGQYLSSDS EDTSTPSVLI GSPHKASTSK KLSGKTKTNP RKEPEDPNCS HWHVIEEKNT DDDEHADYHY TRFANYLTGE ERDEIFSLVS LQPGNPVFVV VLQTAHVRRR NILIVPTRFA ADHLERKSHD ILLIRPNRKQ KWSVKYYYLS NTTRGFNCHR WIKFIRENRL REGNVCIFEL MKGARRPTMT VHVIGKADNR FVLLG // ID A0A0D3HWA7_9ORYZ Unreviewed; 366 AA. AC A0A0D3HWA7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OBART12G17560.1}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART12G17560.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART12G17560.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G17560.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART12G17560.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G17560.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART12G17560.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART12G17560.1; OBART12G17560.1; OBART12G17560. DR Gramene; OBART12G17560.1; OBART12G17560.1; OBART12G17560. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000026960; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41865 MW; 7E936D3B879A4723 CRC64; MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL KAPSGETWCV SIEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT KTNPNKDDPF STGKEPEDPN SSRSHVKHEM IEEEKSDDDD EHADYEHADY YYSRFANYLT GEEREEIFSL VSLQPGNPVF VTVLQAPQIH RKGLLIVPSG FAADHLDSRS QEILLMRPNK KEKWYVKYYH ASTTRGFNCQ RWIKFIRENR LREGYICIFE LMKGARRVTM TVHVIGKVDD RFVLLG // ID A0A0D3HWP7_9ORYZ Unreviewed; 899 AA. AC A0A0D3HWP7; DT 29-APR-2015, integrated into UniProtKB/TrEMBL. DT 29-APR-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza barthii. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART12G18720.1, ECO:0000313|Proteomes:UP000026960}; RN [1] {ECO:0000313|EnsemblPlants:OBART12G18720.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G18720.1}; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De Novo Next Generation Sequencing of Plant Genomes."; RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OBART12G18720.1, ECO:0000313|Proteomes:UP000026960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART12G18720.1}; RX DOI=10.1007/s12284-009-9025-z; RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L., RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B., RA Knight J., Niazi F., Egholm M., Wing R.A.; RT "De novo next generation sequencing of plant genomes."; RL Rice 2:35-43(2009). RN [3] {ECO:0000313|EnsemblPlants:OBART12G18720.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (MAR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OBART12G18720.1; OBART12G18720.1; OBART12G18720. DR Gramene; OBART12G18720.1; OBART12G18720.1; OBART12G18720. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026960; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99824 MW; 1CA5E4AAE5245B75 CRC64; MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRSG DPSKQHPATL QYQQTHNLNS GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE LQQQQRQHVL QEQSNQEMQQ QLPSSDHRVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG NSYPPLHLHN NFHNFSNQEA SNLLSLPRSS QLMASDGWPS KRLALESAVH PEAPSMHPKI EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASVAPLDY // ID A0A0D9UWK3_9ORYZ Unreviewed; 305 AA. AC A0A0D9UWK3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G02360.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G02360.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G02360.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G02360.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G02360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G02360.1; LPERR01G02360.1; LPERR01G02360. DR Gramene; LPERR01G02360.1; LPERR01G02360.1; LPERR01G02360. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 160 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 160 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 33759 MW; 7A6CB35981352A65 CRC64; MEQESMVFSC NSGGSTSMED DSFQELIVAG DGDDVPAAAE LPSSARPSSR YKGVVPQPNG RWGAQIYERH SRVWLGTFAD EDAAARAYDV AALRFRGRDA VTNYNNNNHA GELAFLAAHS KAEVVDMLRK HTYDDELRQG LRRGAARAQP TPPWAREPLF EKAVTPSDVG KLNRLVVPKQ QAERHFPFPL RRNTAAAGGD GGNSKGVLLN FEDGDGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKGLNAG DVVVFSQSAL GMEKHLLIDC KKRRNNKQEV AADEARVVVK LFGVDIAGDK GVVQR // ID A0A0D9UWK5_9ORYZ Unreviewed; 349 AA. AC A0A0D9UWK5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G02380.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G02380.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G02380.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G02380.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G02380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G02380.1; LPERR01G02380.1; LPERR01G02380. DR Gramene; LPERR01G02380.1; LPERR01G02380.1; LPERR01G02380. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 175 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 175 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 37516 MW; A9F27478E6A911FC CRC64; MGVESVPMSS SSISSGASTA TTVSDGAVHL SPAEETVLPA VTSTAATATA TATAATQQSS RYKGVVPQPN GRWGAQIYER HARVWLGTFA DEEAAARAYD VAALRYRGRD AATNFAGESA SAAELAFLAA HSKAEIVDML RKHTYADELR QGLRRGRGVG ARAQPTPSWA REPLFEKAVT PSDVGKLNRL VVPKQHAEKH FPLRRSSDAA AAAASPAATS KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KNLAAGDTIV FSRSAYGPEK LLFIDCKKTK STAPPPPIEA AQRVVKLFGV DIAGGDCRKR PAEMGKEAFL IKRQCVVHQR APALGALLL // ID A0A0D9UYK4_9ORYZ Unreviewed; 700 AA. AC A0A0D9UYK4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G07680.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G07680.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G07680.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G07680.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G07680.1; LPERR01G07680.1; LPERR01G07680. DR Gramene; LPERR01G07680.1; LPERR01G07680.1; LPERR01G07680. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 685 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 77699 MW; BF06006745A466A4 CRC64; MAQGGGGGGG VGDPELVAEL WRACAGPLVE VPQRDERVFY FLQGHLEQLQ EPTDPALLAE QIKMFQVPYK ILCKVVNVEL KAETETDEVF AQITLQPDPD QENLPTLPDP PLPEQPRPVV HSFCKILTPS DTSTHGGFSV LRRHANECLP PLDMSLLTPT QELITKDLHG SEWRFKHIYR GQPRRHLLTT GWSTFVTSKK LISGDAFVYL RSETGEQRVG VRRLVQKQST MPASVISSQS MHLGVLASAS HAIKTNSIFL VYYRPRLSQS QYIVSVNKYL AASKIGFNVG MRFKMSFEGE DVPVKKFSGT IVGDDDLSPQ WSGSEWKSLK VQWDEVTSVN GPERVSPWEI ETCDATAPAI TVPLQSSVKN KRPREPSETL DLQSLEPAQE FWLSGMPQQH EKTGIGSSEP NCISGHQVVW PGEHLGYGAV SSSSVCQNPL VLESWLKDFN SSSKGVSPTL SEISQKLFQV TSNEARLATW PARSAYQAEE PTSKLSTNTA LSGYRTEEVA PNASKVVEGK KEHGMFRLFG VDLMKCTSIS ATTDKASVGT EETSAKAAGS NEDSSQLSAF SKVTKDHIVV DESPREIQSH QNYAKKNRIK VQMQGNAVGR AVDLANIDGY EQLMNELEEM FNIKDLKQKW KVAFTDDEGD TMKVGDDPWL EFCQMVRKIV LYPIEDEKKI DPHPKSLPSA NPEQDHKTEL // ID A0A0D9UYM2_9ORYZ Unreviewed; 502 AA. AC A0A0D9UYM2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G07860.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G07860.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G07860.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G07860.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G07860.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G07860.1; LPERR01G07860.1; LPERR01G07860. DR Gramene; LPERR01G07860.1; LPERR01G07860.1; LPERR01G07860. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 459 486 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 502 AA; 55896 MW; CE91ACDBFC2C71F1 CRC64; MSDLWRERWP LRFGVSGCAN FGGADGKKRG RPPGSQTIGK SKMDQKTALV YQRLALLDSS SSSSSSDKDD DFEPGAEAID YDDMDDVVVV EAAPIKMLRP NQVDGEQRTV PAIPQTCYTQ STDLWNGLTN TIKVPVKGQN KCVSAQGCCG SAMERAKELQ TKLPAEQPSF VKKMLQSHVV RGFWLGLPAD FCNKHLPKVD TVIVLEDENG NSYDTTYLGG KQGLSARWRG FALDHDIKVG DVVVYIVREK NLTTTDGVLG LMSLDACKKQ KISKEERSDN AKSGEHPKTT TNSSKGDHNY TQNLVKEGID GIRFSDSEII FDDVTSLSNF NIIVDGLVID CKFLDHQRMM YYELCCSQKS FLHNNLLKHL NFKLVVGVIM ETINIAEGIR ACKSDTSSHE DFLVWKKTLQ SFELLGMKVA FLLKRVDDLL GLPAQPRDSS ECAKYKEIKL ARSRAGVKMK ALESKLSSLT DELKKMDAEM EEMESSVRKH DVALKKIATA PW // ID A0A0D9UYM3_9ORYZ Unreviewed; 460 AA. AC A0A0D9UYM3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G07860.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G07860.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G07860.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G07860.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G07860.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G07860.2; LPERR01G07860.2; LPERR01G07860. DR Gramene; LPERR01G07860.2; LPERR01G07860.2; LPERR01G07860. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 417 444 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 460 AA; 51322 MW; 33833B34D1D682F1 CRC64; MDQKTALVYQ RLALLDSSSS SSSSDKDDDF EPGAEAIDYD DMDDVVVVEA APIKMLRPNQ VDGEQRTVPA IPQTCYTQST DLWNGLTNTI KVPVKGQNKC VSAQGCCGSA MERAKELQTK LPAEQPSFVK KMLQSHVVRG FWLGLPADFC NKHLPKVDTV IVLEDENGNS YDTTYLGGKQ GLSARWRGFA LDHDIKVGDV VVYIVREKNL TTTDGVLGLM SLDACKKQKI SKEERSDNAK SGEHPKTTTN SSKGDHNYTQ NLVKEGIDGI RFSDSEIIFD DVTSLSNFNI IVDGLVIDCK FLDHQRMMYY ELCCSQKSFL HNNLLKHLNF KLVVGVIMET INIAEGIRAC KSDTSSHEDF LVWKKTLQSF ELLGMKVAFL LKRVDDLLGL PAQPRDSSEC AKYKEIKLAR SRAGVKMKAL ESKLSSLTDE LKKMDAEMEE MESSVRKHDV ALKKIATAPW // ID A0A0D9UYM4_9ORYZ Unreviewed; 267 AA. AC A0A0D9UYM4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G07860.3}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G07860.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G07860.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G07860.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G07860.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G07860.3; LPERR01G07860.3; LPERR01G07860. DR Gramene; LPERR01G07860.3; LPERR01G07860.3; LPERR01G07860. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29528 MW; 535471E2B548B5DD CRC64; MSDLWRERWP LRFGVSGCAN FGGADGKKRG RPPGSQTIGK SKMDQKTALV YQRLALLDSS SSSSSSDKDD DFEPGAEAID YDDMDDVVVV EAAPIKMLRP NQVDGEQRTV PAIPQTCYTQ STDLWNGLTN TIKVPVKGQN KCVSAQGCCG SAMERAKELQ TKLPAEQPSF VKKMLQSHVV RGFWLGLPAD FCNKHLPKVD TVIVLEDENG NSYDTTYLGG KQGLSARWRG FALDHDIKVG DVVVFHLVRS TKFKASIYSK REKLNHN // ID A0A0D9UYM5_9ORYZ Unreviewed; 489 AA. AC A0A0D9UYM5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G07860.4}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G07860.4, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G07860.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G07860.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G07860.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G07860.4; LPERR01G07860.4; LPERR01G07860. DR Gramene; LPERR01G07860.4; LPERR01G07860.4; LPERR01G07860. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 446 473 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 489 AA; 54556 MW; FCF466004C03E3EC CRC64; MSDLWRERWP LRFGVSGCAN FGGADGKKRG RPPGSQTIGK SKMDQKTALV YQRLALLDSS SSSSSSDKDD DFEPGAEAID YDDMDDVVVV EAAPIKMLRP NQVDGEQRTV PAIPQTCYTQ STDLWNGLTN TIKGCCGSAM ERAKELQTKL PAEQPSFVKK MLQSHVVRGF WLGLPADFCN KHLPKVDTVI VLEDENGNSY DTTYLGGKQG LSARWRGFAL DHDIKVGDVV VYIVREKNLT TTDGVLGLMS LDACKKQKIS KEERSDNAKS GEHPKTTTNS SKGDHNYTQN LVKEGIDGIR FSDSEIIFDD VTSLSNFNII VDGLVIDCKF LDHQRMMYYE LCCSQKSFLH NNLLKHLNFK LVVGVIMETI NIAEGIRACK SDTSSHEDFL VWKKTLQSFE LLGMKVAFLL KRVDDLLGLP AQPRDSSECA KYKEIKLARS RAGVKMKALE SKLSSLTDEL KKMDAEMEEM ESSVRKHDVA LKKIATAPW // ID A0A0D9UYM6_9ORYZ Unreviewed; 293 AA. AC A0A0D9UYM6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G07860.5}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G07860.5, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G07860.5, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G07860.5, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G07860.5} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G07860.5; LPERR01G07860.5; LPERR01G07860. DR Gramene; LPERR01G07860.5; LPERR01G07860.5; LPERR01G07860. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 32235 MW; 64C2EF0380BBBEB3 CRC64; MSDLWRERWP LRFGVSGCAN FGGADGKKRG RPPGSQTIGK SKMDQKTALV YQRLALLDSS SSSSSSDKDD DFEPGAEAID YDDMDDVVVV EAAPIKMLRP NQVDGEQRTV PAIPQTCYTQ STDLWNGLTN TIKVPVKGQN KCVSAQGCCG SAMERAKELQ TKLPAEQPSF VKKMLQSHVV RGFWLGLPAD FCNKHLPKVD TVIVLEDENG NSYDTTYLGG KQGLSARWRG FALDHDIKVG DVVVYIVREK NLTTTDGVLG LMSLDACKKQ KISSESKFPL LFCTFDCVIH GRC // ID A0A0D9V3Z2_9ORYZ Unreviewed; 718 AA. AC A0A0D9V3Z2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G22260.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G22260.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G22260.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G22260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G22260.1; LPERR01G22260.1; LPERR01G22260. DR Gramene; LPERR01G22260.1; LPERR01G22260.1; LPERR01G22260. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 718 AA; 78696 MW; 104D6615E4262AD0 CRC64; MVGIDLNTVE EEEEEEEEGC TGAALARAAG GGGVCLELWH ACAGPVAPLP RKGSVVVYLP QGHLEHLGAA ASSGAAAAAV PPHVFCRVVD VSLHADAATD EVYAQVSLVA DNEAVERRMR ERDDGAAGDC EGEDAAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL QRPSQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE LRLGVRRAAQ LKNVSPFPAL HNQSSNASSL SEVARAVAVK SIFHIYYNPR LSHSEFIIPY WKFMRSFNQP FSVGMRFKLR YESEDASERR RTGIIIGSRE AEPIWHGSKW KCLVVKWDDD VECRWPNGVS PWEIELSGSI SGSHLSTPNS KRLKPCFPQV NPDIVLPNGS VSSDFAESAR FHKVLQCQEL FGLKTRDGTV NTASQVTEAR KFQYPDERSC FISMGNNFSG VPKLGVKTPS RNLGFSYHCS GFGESQRFQE VLQGQEVFRP YRGGTLSDAC IRGSGFRQPD GNHASGAAFK WLAPQGCDHH GITTPVLPQA SSPSSVLMFP QTSSKMPGLE YIYGCMDRNE SSQHFKTGPT QDMARADQTL RLWPHLISGK VLDECKGNEK LHSPVSGAEH ESNNSCLNTN GCKIFGISLT EKVQAGDEVD CANASYHSRL QSLKPQMPKS LGSSCATVHE QRAVVGRVVD ISAVNTMI // ID A0A0D9V4F9_9ORYZ Unreviewed; 381 AA. AC A0A0D9V4F9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G23470.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G23470.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G23470.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G23470.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G23470.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G23470.1; LPERR01G23470.1; LPERR01G23470. DR Gramene; LPERR01G23470.1; LPERR01G23470.1; LPERR01G23470. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 129 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 207 316 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 129 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 207 316 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 40248 MW; 9821AD5A89B0D8FD CRC64; MDSSSSLVDD TNSGGGGSGS SSTDKLRALV AAAAETAPLE RMGSGASAVV DAAEPGAEAD SGGRVVGGKL PSSKFKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR AYDVAAQRFR GRDAVTNFRP LADADPDAAA ELRFLAARSK AEVVDMLRKH TYFDELAQSK RALLAAFTPS SAATTTPAAS LIPSPRSPAA AARQHLFDKT VTPSDVGKLN RLVIPKQHAE KHFPLQLPSA GGESKGVLLN FEDAAGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLHAG DVVGFYRAAA GDDDGGKLFI DCKLVRPTSA AVADQAAASP AVKNSIRLFG VDLLMAPTPD EHLAGCKRAR DLATTPQAAA LKKQCIELAL V // ID A0A0D9V4N9_9ORYZ Unreviewed; 725 AA. AC A0A0D9V4N9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G24090.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G24090.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G24090.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G24090.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G24090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G24090.1; LPERR01G24090.1; LPERR01G24090. DR Gramene; LPERR01G24090.1; LPERR01G24090.1; LPERR01G24090. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 539 564 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 585 610 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 616 634 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 691 717 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 251 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 251 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 725 AA; 81340 MW; A65AC3B3244F4BCB CRC64; MGMLKLGKNC SACKEWQEHC YWSHMADDKK HFVKHMVGDF TGSMMVPTKF ANNFNGHIYE EVNLKSPGGK TWTIGVANSG TGEVIFQSGW KEFVDANNIQ EGDCLVFRYS GVSSFDVLVF DPSGCEKASL HFDENNAHGR TEKSAGADEG GHVDNCYHRY LEMTLHKNSG RSIPRACKRD LFSDEIKQDQ CQEKENVGED EDEDLVAAAE DKYYFCKNGP VIEYRLTADD KAEISSVRVP VEPGNPVFVQ LIHPSHVRGT RGYSFISVSS EFAAKYLGAV ENEVVLERAT RRGKWHVQFM RRENNSGFAG TGWRQFAHDN DLIGHDVCLF ELMMMNEAGD RRRNRRRPKM AVHVLRKFRL SSQMHAKKQS EPIERWNCSP SVPLAFAFRG PRPRTCHRAV KSRPGNAKAT VGVGRHALRR YGNHDGRFHI KRITSFAAMD KQVPIVSPTT DALPVEETNN STGDASGSSY FTERGIGKPG FVTFQGGSSQ MKSVESVPHP GKEASRLVWF VGPTTLVAFL VLPSLYLRKV LSAVFEDSLL TDFLILFFTE ALFYGGVAIF VLLIDKVWRP LQQVAPKSYI WSKSRFFRIS SVTTMVFSLM IPLLTMGMVW PWTGPAASAT LAPYLVGLVV QFAFEQYARH RKSPSWPVIP IIFKIYRLHQ LNRAAQLVTA LTFSVRGTEA TNQTLAIMNS LGALLTVLQI LGVICVWSLS SFLMRFLPSS DIPDP // ID A0A0D9V549_9ORYZ Unreviewed; 405 AA. AC A0A0D9V549; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G25220.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G25220.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G25220.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G25220.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G25220.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G25220.1; LPERR01G25220.1; LPERR01G25220. DR Gramene; LPERR01G25220.1; LPERR01G25220.1; LPERR01G25220. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 405 AA; 45095 MW; 01438233141ACFB3 CRC64; MPGAGGKSPW ASGERRPHFF KVLVGDFKQR LKIPPNFCKH IPWEESRKAK SLKESSMAAT LEGPSGRTWL VVIRRTAEGT FFTSGWPKFV QDQALRDLEF VVFRYDGNTH FTAMVFDRTA CEREDLVGSG GGDRPRKKRG RPRNASRDAP RPKKDSVGKE LVAYNHAPPT GQPLQIADSN GTPEQGSTAV KNEEGDDDDE IVLCALPAPS PSPSSTQHAS PNPSHVPEGA LGVDGVAAAK RGALKTRSLQ DDLALASIPL SIRRYKGYVS RRRPVTTAER QRATEIAHAF RSPLPYCVIR MSTMHVYYSF MMRFPTGFSR QHLPRERTDV VLRDPTGKAW AVLYIPNTRD RLSRGWCAFA RGNCLEEGDY CVFELVAAGE FRVHIFRVVE PPVPAVRLRR VTVSV // ID A0A0D9V555_9ORYZ Unreviewed; 637 AA. AC A0A0D9V555; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G25240.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G25240.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G25240.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G25240.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G25240.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G25240.1; LPERR01G25240.1; LPERR01G25240. DR EnsemblPlants; LPERR01G25240.2; LPERR01G25240.2; LPERR01G25240. DR Gramene; LPERR01G25240.1; LPERR01G25240.1; LPERR01G25240. DR Gramene; LPERR01G25240.2; LPERR01G25240.2; LPERR01G25240. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 529 570 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 637 AA; 73302 MW; 8C6C3B47FA63809E CRC64; MEGARRHHFM KVMVGEFTRR LEIPHDFLVH IPEVATNTSD TSLPSSAKGT LQNFEGKTWP VELEKLDGRV YLTTGWTKFV EDNFLRKFEF LLFRYDENMH FMVLPFSLNA CEKVIRSSGS PEGKLPYDIF CSNERVQNGR LTEAVNSLTP SHSQIVTLQR SAQGHEHISA QSCPDQHETC LLKNGLDEHL SLKGYMEDDK ANAIAEVMRT LDVDKVTVEL FCAMLGFYKW NVDAVAEVFD ICKGKPHIQN QFLKHKLLFQ FDTVKRKLRN FFLPDDYYSS PIPKSRKSGL EDPKLSNQSL QRDLTAVSCR LVDECSFQDS EQVKTAHDEV DLEPRNSQGE NEGNLDKVNN KEIGEEQTEI NAVETFESLM RSIESSPTNC EVSAYSRLNG LCLTWKPTEH VDPLEKVLLD IQRDNFVKTI SHVQGIMRNH PSDLLTADVI TTVVQKEILK WDHCLEDRDA QRIVNALLEH AKKIKEMHNF NLELRKEEFS AKLQVQLKWQ LKEVETAYTS LELDYKKATS DDNAAFSSLH EQKKKLHNLQ NEITGLQQSL EMKKDEMQKL SHQIAEHESV FQKSLMERIR IKEVMKSYEQ TLAEVKVRLT STEVGSIDVE ALVKVEMDNM TKEIELSKES LLNITFK // ID A0A0D9V5S0_9ORYZ Unreviewed; 709 AA. AC A0A0D9V5S0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G26810.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G26810.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G26810.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G26810.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G26810.1; LPERR01G26810.1; LPERR01G26810. DR Gramene; LPERR01G26810.1; LPERR01G26810.1; LPERR01G26810. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 191 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 191 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 77667 MW; 9057B614073D2E55 CRC64; MASASSSSTS SRPPLMVLPS FYHRPPWPSE RGGGEHRSDC WAGSPVGGGR ARAAMGIDLN NTASGGGGEE DDAPPAPVVC RELWHACAGP VVSLPRRGCK VVYLPQGHLA AAGAGGGIRG EVAVALPPHV ACRVVDVELC ADAATDEVYA RLALVAEGEV FERNFHGGGI EKEDDMEDGD DERKSGMLHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DHKQLRPSQE LVAKDLHGAK WKFRHIYRGQ PRRHLLTTGW SSFVNKKKLV SGDAVLFLRG DDGELRLGVR RATPLKNEAI FKAFNTESSK MRTLSAVADS LKHGSVFHIC YNPRATASEF VVPYWKFVKS FNHPVCVGMR FKFQFESEDV NERRAGIIAG VSELDPIRWP GSKWRSLLVR WEDTTDCNSQ SRVSPWEIEI VDGSVSVAHS LSTSNGNGRP DSVETEKFPR VLQGQELMGS RTHPVTCSPQ SIDVTKSKCF DAWRFLTDTR SCMFSSSTSR LPVQYSGFSH QSVGFSESIG FPEVLQGQEI SQTVPQFQGM VPDACSAKSR YELQNYMCTS ATMTGLSAAN QGYCLSLSTV PPSAPSSLMS YQTSVPQLEL ASKNNDKSVS QHSETSWEQF KIGKASVPGH SAKPVHGGRD VGRTSCRLFG FSLTEKVIPT TEKDGEKEGN YETDCQNPRM LDLFGYNCTT PGRDRYIWRH IHSAPHPQI // ID A0A0D9V984_9ORYZ Unreviewed; 534 AA. AC A0A0D9V984; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G35540.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G35540.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G35540.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G35540.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G35540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G35540.1; LPERR01G35540.1; LPERR01G35540. DR Gramene; LPERR01G35540.1; LPERR01G35540.1; LPERR01G35540. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 437 532 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 437 532 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 534 AA; 59476 MW; A55A139144F9E38D CRC64; MDRASSSEKS SPMPTIPSFF KIMVGYFSET MDIPLPFART ITDLEGSIIY LEDAFGLRWR VWLCLRDGVL HLVMGGRTLC SITTSALASS WQIARSVFTV QIFGISACER MHHCEKNKRQ SRKMKPSQKT DYPANNQMVK MWINVERNNA PNRDMIWVPA NLNCLFMYVS TSSELRCSES SAKELDVAAG ESHEVVEVPK RAANDCTTEC NATLLMADKE PARSHQDSPM QLYCALGLED GNAATEDCED SKILENAEQR TPLATMDLNE ASIDDIFLSA DIYEFDSDFC SPEAFSFDLN NEGLATNGQS SDIYFGMPAT STCLENKQMS DVPITSADGG SVTVHGIEIN VLPAWPDAYK RVNIFCASLL RATKLQKKQD ILEDGPRQTA VEIMPSSPKT SELAELRKNS VQPGNNCEGQ EKGRTKSLAI LAVAANNKKF CIAVPPLDQT WLELPRRLPV LPKTKKQARK ILILKDPSMR LWPVLYQCTP KFNGFITGWA DISRENNLHE GDTCVFELCS KTELSFQVVA PNSQ // ID A0A0D9V990_9ORYZ Unreviewed; 594 AA. AC A0A0D9V990; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G35570.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G35570.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G35570.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G35570.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G35570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G35570.1; LPERR01G35570.1; LPERR01G35570. DR Gramene; LPERR01G35570.1; LPERR01G35570.1; LPERR01G35570. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 497 592 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 497 592 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 594 AA; 66586 MW; 49B52A625CFC63E1 CRC64; MVELITVLKI EQEENNADSH GEERADVHEE KTEKSRPMPT LPSFFKIMVG YFSETMDIPL PFAKTITDLT GSNVYLEDAF GLRWRVRLCL CDGILSFGHG WKNFVLDHDI SIGEFLVFRL IARSVFTVQI FAISACERMH HCERNKRQNK KRKPSKKIDY PANNQMVKVS NKDVDKRRKK QRTEQGYDPS PSQPELPVHV CIDSGSDLRC YESSVKELLD VAAGESHEVV EVPTGAANDC RTECNATVMT ADKESIRSHQ DRPMQLYCTL GLEDRNAATE ECEDSKMLDN AELRTPLATM DLNEASIDDI FLSADIYEFD SDLCSPEAFS VYLNNEGLAK NGQSSVDCFG MPETSTCLEN KQMSDVPITS ADADSVAVAV HGIDINVFPT LPSSVLSEIG QDNSSSYIDA DAYKKCKYVL CLPSEGNQVS QKGNCSVKQD FLEDGPHQTA AQIMPGRPKT WELPDVRKDR SQSGNNCEAQ ESRSTKSCVF LAAAANNKKF CITVPPPDQT WLELPRRLPV LPRTKKQARK ILILKDPSMR LWPVLYQCTP KFNGFITGWA DISRENNLHQ GDTCEFELCS KTELSFQVVA PNSQ // ID A0A0D9V9D1_9ORYZ Unreviewed; 746 AA. AC A0A0D9V9D1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G35880.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G35880.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G35880.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G35880.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G35880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G35880.1; LPERR01G35880.1; LPERR01G35880. DR Gramene; LPERR01G35880.1; LPERR01G35880.1; LPERR01G35880. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 558 660 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 558 660 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 746 AA; 77771 MW; 32AAC62440076365 CRC64; MDASAAGSSA THSHGKQGGG GGGGGGRGKA PAAEIRGGAA RGDDFLFAAA DDTFPNLPDF PCLSSPSSST FSSSSSSSNS SSAFTTAAGG GGGGVTGGEP SEPASAADGF DDLADIDQLL DLASLSVPWD VAEPLFPDDD VGMMMEDAIS PQPPHHQVDG GGEDGAAEYC NTGDEKAVVE SPVGGGDACM AAEEDQAPDD LPGFFMEWLT SNREYISADD LRSIRLRRST IEAAAERLGG GRQGTMQLLK LILTWVQNHH LQNKKRPRTA MDEAAAAAAS SEPSPGYEFP SSGAQEMASA AAGTSWMPYA FTAAPPAYGG EAATAMYQPY NFQQSCSTSS VVVSTQPFSP PTAPPAAAAA AADMHAWPPQ QFGPFAGSST GSYTMPSVVP PPFTAGFAGQ YSGMCSPRLA AGGAVEPSAT KEARKKRMAR QRRLSCLQQQ RSQQINLSQI QISGHPQEPC PRAANSAPVT PSSVGWGGIW STPAAGQIMQ NPLSNRPINN PNPSPTPAKQ QKPSPQEKPK PKPKPAAAQE ESSQQSPSSE KRQGGTKSTA DKNLRFLLQK VLKQSDVGSL GRIVLPKKEA EIHMPELKTR DGITIPMEDI GTSQVWNMKY RFWPNNKSRM YLLENTGDFV RSNELQEGDF IVIYSDIKSG KYLIRGVKVR RAPQEQGNNS SGAVGKHKNG CPEKAGVSDT KAGEGEVDGG SVDGAAAGGG GGKPDGGACK DKSPHGVRRS RQEAAAASMN QMAVSI // ID A0A0D9V9T5_9ORYZ Unreviewed; 804 AA. AC A0A0D9V9T5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G37140.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR01G37140.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR01G37140.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR01G37140.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR01G37140.1; LPERR01G37140.1; LPERR01G37140. DR Gramene; LPERR01G37140.1; LPERR01G37140.1; LPERR01G37140. DR Proteomes; UP000032180; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 694 787 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 804 AA; 90494 MW; 9DF39B5823DBBDD3 CRC64; MPPAAMAPPP PPQHGSSTGD PLYDELWHAC AGPLVTVPRI GDLVFYFPQG HIEQVEASMN QVADNQMRLY DLPSKLLCRV LNVELKAEQD TDEVYAQVML MPEPEQNEMA VEKSTPTSGP VQARPPVRSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSQSPPTQEL VAKDLHGNDW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQMSNVPS SVISSQSMHL GVLATAWHAI NTKSMFTVYY KPRTSPSEFI IPYDQYMESV KNNYSVGMRF RMRFEGEEAP EQRFTGTIIG SENLDQLWPE SSWRSLKVRW DEPSNIPRPD RVSPWKIEPA SSPPVNPLPL SRVKRPRPNA PPASPESPVL TKEAATKVDI DSAQVRSQNS MVLQGQEQMT LRNSLTDSND SDATVHKPMI WSPSPNGAKA HPLTFQQRPS IPMDSWMQLG RRETDFKDAR SVSQSFGDSP GFFMQNFDEP SNHHASFKNQ FQDQGSARHF SDPYLYVPSQ HSLTVESSTQ MHTDSKELHF WNGQSTVYGN SRDQPQNFRF EQNSSSWLNQ PFTRPEQPRV IRPHASIAPV ELEKTEGSGF KIFGFKVDTT NTPNNHLSSP MAATHEPMLQ TPASLNQLQP AQTDCVPEVS VSTAGTTTEN EKSAQQAQQS SKDVQNKSQG ASTRSCTKVH KQGVALGRSV DLSKFNNYDE LKAELDKMFE FEGELVSSNK NWQIVYTDNE GDMMLVGDDP WEEFCSIVRK IYIYTKEEVQ KMNSKSNTPR KEDSSENEKG SVKR // ID A0A0D9VC45_9ORYZ Unreviewed; 1028 AA. AC A0A0D9VC45; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G03100.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G03100.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G03100.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G03100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G03100.1; LPERR02G03100.1; LPERR02G03100. DR Gramene; LPERR02G03100.1; LPERR02G03100.1; LPERR02G03100. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 895 979 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1028 AA; 114239 MW; 4B9D5995A9D1DCD5 CRC64; MWRLAVAERT KAPAMNSELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKDVDAHV PSYPNLPSKL ICLLHGVNLH ADPDTDEVYA QMTLQPVNTY GKEALQLSEL ALKQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELQARDIHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVIVVR DEKHQLLLGI RRANRQPTNI SSSVLSSDSM HIGVLAAAAH AAANSSPFTI FYNPRASPTE FVIPFAKYQK ALYSNQISLG MRFRMMFETE ELGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESAAG ERRNRVSIWE IEPVAAPFFL CPQPFFGVKR PRQLDDESEM ENLFKRAMPW LGEEVCIKDA QNQNSTAPGL SLVQWMNMNR QQSSSIANTS AQSEYLQALG NPAMQNLSAD DLARQLYVQN NLLQQNCIQF NSPKLPPQMQ TMNDLSKAAI PLNQLGAIIN PQDQKQDAVN HQRQQNSIQV IPLSQAQSNL VQAQMQILQK LQQQSLMTQS TSTLSQPALI QEQQKLLIDM QKQLSNSHSF AQQQMMTQQE SKPTLQATSL ISTIQQEQQQ KLLQKQVSLA EVSEVAFQPI SSTNVIPKTG GAMIISGATQ SALTEEIPSC STSPSTANAN QLAQSTKNRY YINTEKVQQS TAPMLIPTSI DAVTATPLMT KELPKPNNSA KQSVINSKLP NVAPGTQNCM NNALQTDTLE TSSSATSLCP SRTDGLVHQG FPSSNFNQHQ MFKDALPDVE IECVDPSNSG LFGINNDNPL GFPIETEDLL INALDSVKYQ NHMSTDVENN YLIQKDALQE ISTSMVSQSF GQSDMAFNSI DSAINDGALL NKNSWPAAPP LQRMRTFTKV YKRGAVGRSI DIGRYSGYDE LKHALARMFG IEGQLEDRQR IGWKLVYKDH EDDILLLGDD PWEEFVHCVR CIRILSPQEV QQMSLDGDLG SNVLPNQACS SSDGVNGWKP RCDQNSGNPS IGPYDQFE // ID A0A0D9VCJ7_9ORYZ Unreviewed; 918 AA. AC A0A0D9VCJ7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G04280.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G04280.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G04280.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G04280.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G04280.1; LPERR02G04280.1; LPERR02G04280. DR Gramene; LPERR02G04280.1; LPERR02G04280.1; LPERR02G04280. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 787 871 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 918 AA; 101811 MW; F10AC8462A062F49 CRC64; MKLSPSAATG GGGSLPDQPA SPPEVAEEQK CLNSELWHAC AGPLVSLPAV GSRVVYFPQG HSEQVAASTN KEMESQIPNY PNLPPQLICQ LHNVTMHADA ETDEVYAQMT LQPLSPQELK DPFLPAELGT ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELM AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDS NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWQ NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP TGLPSLYGGK EDDLTSSLMW LRDGQNSGFQ SLNFGGLGMS PWMQPRLDTS LLGLQPDMYQ TIAAAAALQN TTKQVSPAML QFQQPQNIVG RSLLSSQVLQ QAQPQFQQMY HQNINDNTIQ GHGQPEYLQQ SLQHCQSFNE QKPQLQPQQQ HQESHQQQPQ CVQTPQHQQM QQQKHLSNFH PVPNALSVFS QLSSTPQSAP STLQTVSPFS QQHNFPDTNI SCLSPSNVSS MHNALRPFPS EAASDLPGVP RITPVPVSDP WSSKRVAMES AITSRPHAIS SQMENFDLTP SSIPQNSTLA PLPGRECLVD QDGGSDPQNH FLFGVNIDSQ SLLMQDGIPS LHNDNVSNTI PYSTSNFLNP SQNDYQLNQT LTSPGCLDES EYAPCSDNAD QVKRPPATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR QESRSLSTGI ASVGSVEF // ID A0A0D9VEB2_9ORYZ Unreviewed; 433 AA. AC A0A0D9VEB2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR02G09050.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G09050.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G09050.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G09050.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G09050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G09050.1; LPERR02G09050.1; LPERR02G09050. DR Gramene; LPERR02G09050.1; LPERR02G09050.1; LPERR02G09050. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 297 397 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 297 397 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 47736 MW; B3A5A9903311955C CRC64; MADAKGSSSS GGGSASGGQA AGHGNFTVGS QHNRYHRIPR AMLPPSIRHQ NIAHQQYLAG MIHHPSQTIP VPMAPLPYVQ QYTMVPAPAM LPPQHLHGQS QISQENLQDK APSNNNGAAP NVPTALQGCR PMYNGSAFMT FGHITASSNF FRQNATPCSF DTWTSNNMPR NHVYSTYHPA VIEDHHVPPF HSNNHDTGPG FQTGFRVDQP LVPTSSPFPP ASSSSLSFPS TKISNGPAYS KKAKKSDAKD LPIVFRSDMK SKKNDELDQT PASEPPSMDQ NGELTVRFSC REYRIILCKE LTNSDVGNVG RIVMPKRDAE AHLPALEQRE GEMLEMDDFK LETTWNFKYR FWPNNKSRMY VLESAGGFVK QHGLQTGDIL IIYKSSISSK FVVRGEKAIR PNAVRPVVNC GCKNELNNSE ECGFNISLQT KKT // ID A0A0D9VFN6_9ORYZ Unreviewed; 264 AA. AC A0A0D9VFN6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR02G12560.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G12560.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G12560.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G12560.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G12560.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G12560.1; LPERR02G12560.1; LPERR02G12560. DR Gramene; LPERR02G12560.1; LPERR02G12560.1; LPERR02G12560. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 264 AA; 29651 MW; A2DD50A804446683 CRC64; MAASLPLSAN IVGVEDRHDM ELMEMEHLFD KFLLPSDMCM VTKKLFIPEE HAFKLGNMVK DREGYFVIFF QDGAVPGKLW RFRFMKQSKK PALTKGWGCF VREKGLVAGD TISIFRGAVC RRLFIFCRLG ARTRLSSATM VRHCLSMPHA TSTLAYNSQV VRPGTGMLAR NSASSGQERL HVSDEVSGRV PRSHKASLAR ADAQPYNVSP HGRHRAMVHR QKEPMTEMPP ILESMFVGAT PLVVKTVRLF GVNINVFPKQ ESDN // ID A0A0D9VFN8_9ORYZ Unreviewed; 238 AA. AC A0A0D9VFN8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR02G12580.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G12580.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G12580.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G12580.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G12580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G12580.1; LPERR02G12580.1; LPERR02G12580. DR Gramene; LPERR02G12580.1; LPERR02G12580.1; LPERR02G12580. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 238 AA; 26313 MW; 21D792E447A3C69C CRC64; MAASLPLPTS IHDGAEVPDD KDQVVEMKYL FGKVLMPSDV SWVTEQLVIP NNHVGKLRVV DKDQEGFFVV VVEDGAVSGK IWRFRYLNRN NVDHCLTKGW GCFVREKGLR PGDTVSFFRG GNARERLFIF CNRGTTTTTS HHCLPPPARD LPSSGHGEVG GSTPAARPPP PLVSPRRRRR GTVHPEGEEP TTEMPMILES MTLVGAPPLA KRVRLFGVYI NVPPQQPSGG EPERKYNP // ID A0A0D9VH38_9ORYZ Unreviewed; 582 AA. AC A0A0D9VH38; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G16580.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G16580.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G16580.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G16580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G16580.1; LPERR02G16580.1; LPERR02G16580. DR Gramene; LPERR02G16580.1; LPERR02G16580.1; LPERR02G16580. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 154 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 452 545 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 91 154 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 582 AA; 65493 MW; 90337EB1E3E2EA8B CRC64; MLCTGNYGML VLERWSQYLA KANWSTTSPK LEASTDQQLD QHLPLFNLPS KILCKVVNVE LRAETDSDEV YAQIMLHPES DDMTQNPPWQ ELVARDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSQSE FVVSVNKYLE AKNSKISVGM RFKMRFEGDE APERRFSGTI IGVGSMSTSP WANSDWRSLK IEFHHGNWSH LPRVIRSHRL SLLQEINELG LLLRIQLPQN SLRSLVCGNL QPSPHKRTHE LYPSSPNPIF STPLNVGFNT KNEPSALTNK HFYWPMRETR ADSYSASINK VPSEKKQEPS SAGCRLFGIE ISSAVEATSP VPAVSVVGQE QPAASVDAES DQLSQPSQAN KSDAPAASSE PSPHETQSRQ VRSCTKVIMQ GMAVGRAVDL TRLHGYDDLR HKLEEMFDIQ GELSASLKKW KVVYTDDEDD MMLVGDDPWH EFCSMVKRIY IYTYEEAKQL IPKSKLPIIG DTIKPNPNKQ SPESDMPHSD LDNTAPVTDK DC // ID A0A0D9VH39_9ORYZ Unreviewed; 611 AA. AC A0A0D9VH39; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G16580.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G16580.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G16580.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G16580.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G16580.2; LPERR02G16580.2; LPERR02G16580. DR Gramene; LPERR02G16580.2; LPERR02G16580.2; LPERR02G16580. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 481 574 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 611 AA; 67910 MW; 1C2D575A9D834638 CRC64; MMVGSGAAAA AAGGGGGGGS GSSCDALYRE LWNACAGTLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPSK ILCKVVNVEL RAETDSDEVY AQIMLHPESD DMTQNPPWQE LVARDLHGNE WHFRHIFRGQ PRRHLLTTGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RLMRQLNNMP SSVISSHSMH LGVLATASHA ISTGTLFSVF YKPRTSQSEF VVSVNKYLEA KNSKISVGMR FKMRFEGDEA PERRFSGTII GVGSMSTSPW ANSDWRSLKI EFHHGNWSHL PRVIRSHRLS LLQEINELGL LLRIQLPQNS LRSLVCGNLQ PSPHKRTHEL YPSSPNPIFS TPLNVGFNTK NEPSALTNKH FYWPMRETRA DSYSASINKV PSEKKQEPSS AGCRLFGIEI SSAVEATSPV PAVSVVGQEQ PAASVDAESD QLSQPSQANK SDAPAASSEP SPHETQSRQV RSCTKVIMQG MAVGRAVDLT RLHGYDDLRH KLEEMFDIQG ELSASLKKWK VVYTDDEDDM MLVGDDPWHE FCSMVKRIYI YTYEEAKQLI PKSKLPIIGD TIKPNPNKQS PESDMPHSDL DNTAPVTDKD C // ID A0A0D9VHV4_9ORYZ Unreviewed; 1002 AA. AC A0A0D9VHV4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR02G18630.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G18630.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G18630.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G18630.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G18630.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G18630.1; LPERR02G18630.1; LPERR02G18630. DR Gramene; LPERR02G18630.1; LPERR02G18630.1; LPERR02G18630. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 302 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 874 971 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 302 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 874 971 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1002 AA; 112156 MW; DDA2AB71F956997B CRC64; MDGAFQGRGC AERLRSRDKI DEDESCSDDM RIYAGEEKKK KCSYDMKKNV RKDAGKEMSN CGKKKNRTAG SDDAEQRKKK KILNGDNKPK SRKVCTPFFE KARKKMLSTI SQNGPMKKKS NDISDKKKTV PLSVNKNKVR KGEMSNRTSP NTPVAKERKI QHSDSMEMKK KKRDASFVHP GKRTSQIFNT NNKEMKGEMS NRTSPNTPVV KERKIQHSDS MEMKKKKRDA SFVHSGKRTS QIFNTNNKEM KRKVPSTPLR REQKMQEGRS NDKKEAKKAR IIAEGNEKKT CSDQKKKKRK APFAFFKFMC NKFKELLFIP PAVTPSFEDL NNHHVYLEDS EGKSSKIRLS VVDGSLAFYE GWNNFVLEHF INWGDFLLFE YTEESTFSVR VFGPDSCERL HFNGESIRKG TMKKRKERHT LSDDLVSSYS GQDSEGIYDD SHVSGESSRR KEPKITVDVE IVPSNVAAKS INTASETKDP ERVESGVGNE SLMALGNKDK NLGDGECKTR SDSVLCIQEE TRRSEVIIIT DEASSTQENE DTMKQRTSNE ASETHHMPIN TQKEAERVGD DVWHESSVAL NNKMGNMILG KCKNNDVSPI CSTGRTNGSE IIPTTDSIPL AQEDNDREKL STFSCLKEGK STTREPELAA TTPTKCTEIH DLDEDSRQKH QRNSVQVKST IDIDNYPNNG EMNSSGNDSR LYEAPGGSRC LQKWKEDIVS GQAAHDEIGQ VRPEKPQNAG EKFVDNCGPM GQTPVDPRLE SDVTDTCLKS VLTIPIEQLP SPDSVSVSKY GDGSADGNHF FNRKGATAQL QATKEPLKPT CSGGSRQGDK ILVSASRAHQ SELQIPQQEN AKFSCCVTPV ALVPANDELQ DLDDHSLQLC ISSTIQKWIE LPKSVPKAPL NKGLHDRSVI ILKDPMKRLW PVIYYEKPIF VGFTAGWKPF VAANNLQVGD VCKLVKELDE DEPAYQASRK IVVFCCSNNN NVLGCCGWPP GCLAAVLGGL HF // ID A0A0D9VHV5_9ORYZ Unreviewed; 591 AA. AC A0A0D9VHV5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR02G18630.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G18630.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G18630.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G18630.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G18630.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G18630.2; LPERR02G18630.2; LPERR02G18630. DR Gramene; LPERR02G18630.2; LPERR02G18630.2; LPERR02G18630. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 463 560 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 463 560 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 591 AA; 64768 MW; 9EE0D8E7CBA8CA6B CRC64; MKKRKERHTL SDDLVSSYSG QDSEGIYDDS HVSGESSRRK EPKITVDVEI VPSNVAAKSI NTASETKDPE RVESGVGNES LMALGNKDKN LGDGECKTRS DSVLCIQEET RRSEVIIITD EASSTQENED TMKQRTSNEA SETHHMPINT QKEAERVGDD VWHESSVALN NKMGNMILGK CKNNDVSPIC STGRTNGSEI IPTTDSIPLA QEDNDREKLS TFSCLKEGKS TTREPELAAT TPTKCTEIHD LDEDSRQKHQ RNSVQVKSTI DIDNYPNNGE MNSSGNDSRL YEAPGGSRCL QKWKEDIVSG QAAHDEIGQV RPEKPQNAGE KFVDNCGPMG QTPVDPRLES DVTDTCLKSV LTIPIEQLPS PDSVSVSKYG DGSADGNHFF NRKGATAQLQ ATKEPLKPTC SGGSRQGDKI LVSASRAHQS ELQIPQQENA KFSCCVTPVA LVPANDELQD LDDHSLQLCI SSTIQKWIEL PKSVPKAPLN KGLHDRSVII LKDPMKRLWP VIYYEKPIFV GFTAGWKPFV AANNLQVGDV CKLVKELDED EPAYQASRKI VVFCCSNNNN VLGCCGWPPG CLAAVLGGLH F // ID A0A0D9VIK6_9ORYZ Unreviewed; 680 AA. AC A0A0D9VIK6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G20290.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G20290.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G20290.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G20290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G20290.1; LPERR02G20290.1; LPERR02G20290. DR Gramene; LPERR02G20290.1; LPERR02G20290.1; LPERR02G20290. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 594 674 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 680 AA; 73607 MW; ACC93B1760C41D3A CRC64; MITFADLAEP AAPGAERCVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HALGLATPEL SAARVPALVP CRVAAVRYMA DPDTDEVFAR IRLVPLRAGE DGDVEDGDGV ATAEDQHEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVVAKDVHG VAWNFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RGDGGDLHVG IRRAKRGFCG GGGEAEEAAS HLPGWDQYGG LMRGNASPCA KGRGKVRAED VVEAARLASV GQPFEAVYYP RASTPEFIVR AAAVRAALRV QWCPGMRFKM AFETEDSSRI SWFMGTVAGV QVADPIRWPQ SPWRLLQVTW DEPDLLQNVK RVSPWLVELV PSMPAVHLSS FSPPRKKPRI PAYPEFPFEG QLLNPAFPPN PLAHGHHPHH YPHPSFFPFP DVSAPAGIQG ARQAQFGPSL SDLHLTHLQS SLMYPGLRRP DHVSPTTIPP RISTDLTMGG HGSPPARGDT VSCALSIGAK KPDDTKPLGL MLFGQRILTE QQISLSGSSE KCANASEGSG SGVIQTSPTD NTSSERLQWF RENSAVSELG LLEPGRCKVF IESDTVGRNL DLSALSSFEQ LYGRLSEMCG IDSAELRSRV LYRGATGEVK HAGDEPFSEF IKLARRLTIL TDAGSDNLGS // ID A0A0D9VJJ9_9ORYZ Unreviewed; 423 AA. AC A0A0D9VJJ9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR02G22870.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR02G22870.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR02G22870.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR02G22870.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR02G22870.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR02G22870.1; LPERR02G22870.1; LPERR02G22870. DR Gramene; LPERR02G22870.1; LPERR02G22870.1; LPERR02G22870. DR Proteomes; UP000032180; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 423 AA; 45200 MW; 0D33BF34946DD766 CRC64; MEFTTTSSRF SKEEEDEEQD EASRREIPFM TAATTTAEAA AASAAPTSPS SSPAHAASSA SASASGSSPP FRSDDGAGAS GSGGGGEAEA AAVEKEHMFD KVVTPSDVGK LNRLVIPKQY AEKYFPLDSA ANEKGLLLNF EDRAGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD TVSFSRGVGD DAARRRLFID WKRRADTRVV VDPLRHHLSR GLPLPMPFTS SHYAPWGGGF FVPPSPPATL YEHRLRQGLD FRTFNPAAAS PIGRQQVLLF GSAAARIPPQ AQLLSSRAPP SPLMHHYTLQ QPSGGDGGVI RPVVLDSVPV NIESPTTAAK RVRLFGVNLD NPHGVGGSGA GESSNHGHGG NALSLQAPAW MRRDPTLRLL ELPPHGGESS AASSPSSSSS SKRDAHSALD LDL // ID A0A0D9VNT7_9ORYZ Unreviewed; 318 AA. AC A0A0D9VNT7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G01560.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G01560.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G01560.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G01560.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G01560.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G01560.1; LPERR03G01560.1; LPERR03G01560. DR Gramene; LPERR03G01560.1; LPERR03G01560.1; LPERR03G01560. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 318 AA; 34447 MW; 48386B860F160B05 CRC64; MEFITPIVRP ATAMAAGGGG GRGVEEESDG RKLAPEVVEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSSNEKG LLLSFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFG RGVGEAARGR FFIDWRRRPD VVAALAPPSH RFPSSVSVPF APWSAAAAAA AHYYHGGGGG GGGSRFLQLP PSTAIYDHRR HGQAVGYDDY AAAAASRQVV FYRPVTHHQQ QQPAVVLESV PVRMAAAGHG EPSAPSKRVR LFGVNLDCAN SEEDAKTAPP PLLQLPSPPS SSSTSSSGKV RCSLNLDL // ID A0A0D9VQE6_9ORYZ Unreviewed; 239 AA. AC A0A0D9VQE6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G05580.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G05580.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G05580.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G05580.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G05580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G05580.1; LPERR03G05580.1; LPERR03G05580. DR Gramene; LPERR03G05580.1; LPERR03G05580.1; LPERR03G05580. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 26649 MW; 85223F737AB37CF6 CRC64; MAMAVEKSGG MSAYEAARER TVEENKRKME ALNLRHLSAA VAVAPKTPSP MKQKRRRIIE AAVVAPSPPR RSRRLANLPE VKYAEVAPDG AERMKRSPRK PTDSIYLATH GSISMEARLE AARKAEELEA QLDPEFPSFV KPMLHSHVVR GFWLGLPRHF CDTYLPKRDA IVTLVDEKDE EFSTNYLAYK NGLSGGWAGF ALDHGLLDGD ATVFQLIKPT TFKVHIIRAT VGDRNEVAK // ID A0A0D9VR52_9ORYZ Unreviewed; 274 AA. AC A0A0D9VR52; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G07400.3}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G07400.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G07400.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G07400.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G07400.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G07400.1; LPERR03G07400.1; LPERR03G07400. DR EnsemblPlants; LPERR03G07400.2; LPERR03G07400.2; LPERR03G07400. DR EnsemblPlants; LPERR03G07400.3; LPERR03G07400.3; LPERR03G07400. DR Gramene; LPERR03G07400.1; LPERR03G07400.1; LPERR03G07400. DR Gramene; LPERR03G07400.2; LPERR03G07400.2; LPERR03G07400. DR Gramene; LPERR03G07400.3; LPERR03G07400.3; LPERR03G07400. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 30299 MW; 21CA2E271CB9FEB6 CRC64; MANSRLANYE FFKVILPGSS KTKLKLPDKF VRELEHEHGQ ILRDAKLHVA GRRRQLWDVR VVVDDVTGGA YLTRGWLQFT RAHDIGDGLF LVFRFDGAAT FAITVFDPTM CRRDYYRHDA GESGSSSSGG GDGDCDSDSD ASEGDGDGGG GDVATSQFAV TLRLCNLGEK QAQYLNVPVE FQEAHGYAKR AEVALRMRGR TWTVRLKHSR KQKGQRAALR YGWHQFCVDN GLAVGDTCFF RLLPVPNHAG AGDDDDGDHV LKVSVRKADG TFIE // ID A0A0D9VU83_9ORYZ Unreviewed; 168 AA. AC A0A0D9VU83; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G15710.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G15710.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G15710.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G15710.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G15710.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G15710.1; LPERR03G15710.1; LPERR03G15710. DR Gramene; LPERR03G15710.1; LPERR03G15710.1; LPERR03G15710. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 19844 MW; A0B2755C75FAEF3D CRC64; MSGSFYDIAM TNSQKEKKRR KRRDNANIPS SPVESSEDDL EWDLVPGCIA PRQNRLTHSQ KKIMNEKTKE INSENHINGY VINKNNVEFS RKYADLYLPF EDETLVFQRR GKTWNVRCCI TKKNSRRILK GWAQFARDND LFVGDICLFE LLVNNKKYVM KVHIIRKK // ID A0A0D9VWB3_9ORYZ Unreviewed; 175 AA. AC A0A0D9VWB3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21380.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21380.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21380.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21380.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21380.1; LPERR03G21380.1; LPERR03G21380. DR Gramene; LPERR03G21380.1; LPERR03G21380.1; LPERR03G21380. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 19280 MW; 19B08628436975B2 CRC64; MATAASFFLR RTIPHKFAQN FGDKIQGMIK LKACNGNTCS VLVAKCSEKL VLTAGWAAFV RSHDIKIGDF LVFRYISNSQ FKVKIFGPSG CVKASSHNAA KVAHDVQNMQ GDLIGISSSS DNNLLKQWLT TERQNELEMD GTDNCNEKMK TENAFSSKDD QETPAASGYV LSRTF // ID A0A0D9VWB4_9ORYZ Unreviewed; 418 AA. AC A0A0D9VWB4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21390.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21390.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21390.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21390.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21390.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21390.1; LPERR03G21390.1; LPERR03G21390. DR Gramene; LPERR03G21390.1; LPERR03G21390.1; LPERR03G21390. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 161 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 350 414 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 161 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 350 414 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 418 AA; 48039 MW; E9037AE52A79D321 CRC64; MRKPNTRSTE RVEYYLCNRM DNQEKHFFKV MIGDFHNRMI IPENFEYYFK GVITKTIKLE TCNGTFDVQI TKKLNRMVLG SGWEPFVSAH GLKMGEYSPS EHESVESADL QTSQEPYILL HFSYLSDVQK ERVDALIQKI QPKITVFVAI MRYAALHFPH ESRNVTVQRP CKSKKWHPTF YKRKDGSINI LRGYWSYFVQ DNRVQEHDIC VFVPTKHAGN FTFTVHLLCT SATCSMGGTC VDRIGSSVGT THAVNSSIVM EEPIEADDVS LENCRNGVSD ESEDSEDSEG PADPPYIIVK EKVRSIQSKV PLYVALMKKT NIELTGCHCQ LEFGACYSAT VHLPDRRQTV LLERLGKIWA TMMHVKNGRS MRRFLINGWN RFVRENRLRI GDICLLELKT HETKKLTIAV HAISSNQR // ID A0A0D9VWF3_9ORYZ Unreviewed; 1651 AA. AC A0A0D9VWF3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21720.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21720.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21720.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21720.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21720.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21720.1; LPERR03G21720.1; LPERR03G21720. DR Gramene; LPERR03G21720.1; LPERR03G21720.1; LPERR03G21720. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 9. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 313 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 510 608 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 640 733 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 860 959 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1095 1159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1179 1272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1364 1463 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1614 1649 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 313 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 510 608 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 640 733 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 860 959 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1095 1159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1179 1272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1364 1463 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1614 1649 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1651 AA; 185996 MW; AFFC91A6BB7214D0 CRC64; MHFGSLSITR QWGPRVSPLL SSSSSSTLPP NLSVCLGGVA ITGCRRRRPS VAADAAVEWD APRTPHGRHG LVRRLNHPLF RVGNSVEMAG SGSRMKKSCD CCQTYLGHLG GKMNCFLRRM TADSRRSMIL PDKFANHFGG NISGTIKLQA PNCILYVVEV TVCMNKTVLK CGWEAFVAAH RIEENDYLFF SHLGNSRFEV LILDSDGCEK VFSCTGIKNN CSMKEKSVDA VSISSSSCDD TVQSSESEGF ARYQKGSFSR KDSPSEHESV DSGDLQTSQE PYTLSRFSYL SDVQKERVDA LIQKIQPKIT VFVAIMRKSN VQLPAPLLVI ASRYAALHFP HESRNVTLQR PCKSKKWHPT FYKRNEKSIN ILRGYWSYFV QDNRVQENDI CVFVPTKDAG NFIFTVHLLR AAATYSMGGT GVDRIGSSVG ITHAMKSSSD IIVKEEPIEA DDVSLENSRN GVSEDSEDSK GPADPFYIVP CKSRLSSLQK KIVKDKVRSI QSKVPLYVAL MKKTNVELTG RRCQLEFGAR YAAVVHLPDR RQTVLLERSG KIWATVMHVK NGRSTRRFLI NGWSRFVRDN RLRVGDICLF ELKTHETKKL TMAVHAISSS NQFEMAGSGS RMKKSCDCCQ RYLEHLDGKM NCFLRRMTAN SRRSMIMPDS FVNHFGGNIS GTIKLESPNG ILYVVEFTEF MNKTVLKCGW EAFVDAHHIE ENDSLLFRHI ENSRFKVLIL GSDDCEKVFS CAGIKNNCSI EEKSADPVSI SSSSCDDINT AQSSESEGSA RYQKGNFSHR RKISKLASSS SSYGDSGEDS PSEHDNVRSG DLQTSQEPYV LSRFHHLSES QKERVDELIK EIQPEITVFV AVMRKFNVQL PTPFLVISSA YAAVHFPHES RSVTLRRPYK SKKWHPKFYK RKDGSMNILR GYWSDFVKEN RLLEQDLCVF VPTKDASNFA FTVYVLRAAA TYSRGGTGVD RIGSSVRTIH VKSASDVIIR EEPIEADDVS LENSRNGVSD ESVESEDTEG PADPPCIVPS ASKSRLSSLQ KNIVNEKVKS IQSKVPIYVA VMNKTNIGLS SCRSQLEFGA QYAAAVHLPD RRQTVLLERS GKRWATVMHV NNARSTRRFL INGWSRFVRD NRLRVGDICL FELKTRERKK LTMAVHTISS KQSLAPVAKN TWNIWGGKMS YFLRQMTADS MRSMILPSRY VNHFGGKFPG TIKLESPNGI LYVVEVIEYM NKTVLQCGWE AFVDAHRIKQ NNSLLFRHIE NSRFEVLILD TDDCEKVFSC AGIKNSSCAH DKAVDPADIS GSSRDDTEQS SRSERSTRCK MDIFNDHKNN VNWTEVSSSS EELAQKERVV AHIKDIQPQI TVFVAVMKKC NLQSPAPYLV ISSRYASVHF PRESATITLQ MPSKRKKWHP KFYKRKDKTD HMLRGQWKNF VHDNCLQEED ICLFAPTKGG RNFTFTVHLL RAAATHSTGG TDICKIGSNH NGMNANMASQ VHLKEEPDDG ENVSSESDKH GVSHESQESK DSASPSEPPY ILSRARHQLS QWQKKKVEAK VRAIQSKFPI YVAIIGRISG GDGYGRICQL ELGSRYAAAH LPDTNHQTVV LQCKGMIWQI KYDGWRKFVH DNRLHVGDFC LFELKEKKLT MEVHIIFNLR R // ID A0A0D9VWF4_9ORYZ Unreviewed; 1105 AA. AC A0A0D9VWF4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21720.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21720.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21720.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21720.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21720.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21720.2; LPERR03G21720.2; LPERR03G21720. DR Gramene; LPERR03G21720.2; LPERR03G21720.2; LPERR03G21720. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 313 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 613 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 633 726 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 818 917 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1068 1103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 313 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 549 613 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 633 726 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 818 917 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1068 1103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1105 AA; 124220 MW; 3EBD3673D1076843 CRC64; MHFGSLSITR QWGPRVSPLL SSSSSSTLPP NLSVCLGGVA ITGCRRRRPS VAADAAVEWD APRTPHGRHG LVRRLNHPLF RVGNSVEMAG SGSRMKKSCD CCQTYLGHLG GKMNCFLRRM TADSRRSMIL PDKFANHFGG NISGTIKLQA PNCILYVVEV TVCMNKTVLK CGWEAFVAAH RIEENDYLFF SHLGNSRFEV LILDSDGCEK VFSCTGIKNN CSMKEKSVDA VSISSSSCDD TVQSSESEGF ARYQKGSFSR KDSPSEHESV DSGDLQTSQE PYTLSRFSYL SDVQKERVDA LIQKIQPKIT VFVAIMRKSN VQLPAPLLVI ASRYAALHFP HESRNVTLQR PCKSKKWHPT FYKRNEKSIN ILRGYWSYFV QDNRVQENDI CVFVPTKDAG NFIFTVHLLR AAATYSMGGT GVDRIGSSVG ITHAMKSSSD IIVKEEPIEA DDVSLENSRN GVSDESVESE DTEGPADPPC IVPSASKSRL SSLQKNIVNE KVKSIQSKVP IYVAVMNKTN IGLSSCRSQL EFGAQYAAAV HLPDRRQTVL LERSGKRWAT VMHVNNARST RRFLINGWSR FVRDNRLRVG DICLFELKTR ERKKLTMAVH TISSKQSLAP VAKNTWNIWG GKMSYFLRQM TADSMRSMIL PSRYVNHFGG KFPGTIKLES PNGILYVVEV IEYMNKTVLQ CGWEAFVDAH RIKQNNSLLF RHIENSRFEV LILDTDDCEK VFSCAGIKNS SCAHDKAVDP ADISGSSRDD TEQSSRSERS TRCKMDIFND HKNNVNWTEV SSSSEELAQK ERVVAHIKDI QPQITVFVAV MKKCNLQSPA PYLVISSRYA SVHFPRESAT ITLQMPSKRK KWHPKFYKRK DKTDHMLRGQ WKNFVHDNCL QEEDICLFAP TKGGRNFTFT VHLLRAAATH STGGTDICKI GSNHNGMNAN MASQVHLKEE PDDGENVSSE SDKHGVSHES QESKDSASPS EPPYILSRAR HQLSQWQKKK VEAKVRAIQS KFPIYVAIIG RISGGDGYGR ICQLELGSRY AAAHLPDTNH QTVVLQCKGM IWQIKYDGWR KFVHDNRLHV GDFCLFELKE KKLTMEVHII FNLRR // ID A0A0D9VWF5_9ORYZ Unreviewed; 1103 AA. AC A0A0D9VWF5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21720.3}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21720.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21720.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21720.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21720.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21720.3; LPERR03G21720.3; LPERR03G21720. DR Gramene; LPERR03G21720.3; LPERR03G21720.3; LPERR03G21720. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 313 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 611 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 631 724 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 816 915 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1066 1101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 313 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 547 611 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 631 724 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 816 915 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1066 1101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1103 AA; 124362 MW; 3DEF5DA0BDBD7C1E CRC64; MHFGSLSITR QWGPRVSPLL SSSSSSTLPP NLSVCLGGVA ITGCRRRRPS VAADAAVEWD APRTPHGRHG LVRRLNHPLF RVGNSVEMAG SGSRMKKSCD CCQTYLGHLG GKMNCFLRRM TADSRRSMIL PDKFANHFGG NISGTIKLQA PNCILYVVEV TVCMNKTVLK CGWEAFVAAH RIEENDYLFF SHLGNSRFEV LILDSDGCEK VFSCTGIKNN CSMKEKSVDA VSISSSSCDD TVQSSESEGF ARYQKGSFSR EDSPSEHDNV RSGDLQTSQE PYVLSRFHHL SESQKERVDE LIKEIQPEIT VFVAVMRKFN VQLPTPFLVI SSAYAAVHFP HESRSVTLRR PYKSKKWHPK FYKRKDGSMN ILRGYWSDFV KENRLLEQDL CVFVPTKDAS NFAFTVYVLR AAATYSRGGT GVDRIGSSVR TIHVKSASDV IIREEPIEDD VSLENSRNGV SDESVESEDT EGPADPPCIV PSASKSRLSS LQKNIVNEKV KSIQSKVPIY VAVMNKTNIG LSSCRSQLEF GAQYAAAVHL PDRRQTVLLE RSGKRWATVM HVNNARSTRR FLINGWSRFV RDNRLRVGDI CLFELKTRER KKLTMAVHTI SSKQSLAPVA KNTWNIWGGK MSYFLRQMTA DSMRSMILPS RYVNHFGGKF PGTIKLESPN GILYVVEVIE YMNKTVLQCG WEAFVDAHRI KQNNSLLFRH IENSRFEVLI LDTDDCEKVF SCAGIKNSSC AHDKAVDPAD ISGSSRDDTE QSSRSERSTR CKMDIFNDHK NNVNWTEVSS SSEELAQKER VVAHIKDIQP QITVFVAVMK KCNLQSPAPY LVISSRYASV HFPRESATIT LQMPSKRKKW HPKFYKRKDK TDHMLRGQWK NFVHDNCLQE EDICLFAPTK GGRNFTFTVH LLRAAATHST GGTDICKIGS NHNGMNANMA SQVHLKEEPD DGENVSSESD KHGVSHESQE SKDSASPSEP PYILSRARHQ LSQWQKKKVE AKVRAIQSKF PIYVAIIGRI SGGDGYGRIC QLELGSRYAA AHLPDTNHQT VVLQCKGMIW QIKYDGWRKF VHDNRLHVGD FCLFELKEKK LTMEVHIIFN LRR // ID A0A0D9VWF8_9ORYZ Unreviewed; 545 AA. AC A0A0D9VWF8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21750.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21750.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21750.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21750.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21750.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21750.1; LPERR03G21750.1; LPERR03G21750. DR Gramene; LPERR03G21750.1; LPERR03G21750.1; LPERR03G21750. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 242 343 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 480 542 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 242 343 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 480 542 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 62005 MW; D779558C942F7082 CRC64; MAGQGSHMKK PSDSSKRHAD HIDGKMKCFH MQMNANFQHS MIIPNKFVDH FGGKMSRTIE LESPKGIVYI VKVTKHKNKT VLQCGWEAFV DAHHIEENDS LLFHHIENSR FEVLILDSDG CEKVFTCAGI KRTYSLEERN ADSIDIASNT QDDTMESSES HSGSDSQRSK IAEFAATTYS SGGSGEDVTE SSSSEDESSY ELDDPQTPLE PILSSGTKLS DAQKEKVAKL IRDIQPEIPL YAAVMKHSNV NSAHSSLVIA KHYASAHFPN TSQTITLQRQ GKNKKWHPRF HVRKDGAGYI LHGRFWIDFV LDNRLKEEDI CIFVLTKSTG RNFRATVHVL REKKPHSGPL LAPKRFDSRD VRTKSKVTDA RRLSSTEGKR GTRGTSTTSV KKELDDDQRN NREGKHQEPH KFNDSERSSE PYLLSDRASL NEVQISKVIE IAYSYQYEVP IYVTVMSKSN VGTDGQYIII FVKQFARRYL PEGKSKTWQV QMCPQIGDAQ KLTVGWRDFV HDNHLQMKDI CLFQLMNNER RLTMIVHIIR NNEKS // ID A0A0D9VWF9_9ORYZ Unreviewed; 578 AA. AC A0A0D9VWF9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21760.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21760.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21760.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21760.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21760.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21760.1; LPERR03G21760.1; LPERR03G21760. DR Gramene; LPERR03G21760.1; LPERR03G21760.1; LPERR03G21760. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 477 575 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 477 575 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 65295 MW; 0B7F0D000AF446EC CRC64; MPTRRQRQWA ELRSSRGLAA SSFSNGVASA SARPRGSAGF FSPGLITTRH QLAELLCVKK PCDCSNRYGD HLNVKMKCFH IQMSANFRHS MIIPNKFLDH FGGEILATIE LESPRVIVYI VKVTKHMNRT VLNCGWGAFV DANQIEENDS LFFRHIENSR FEVLILDSDG CEKIFSRSGI KRAYNVQERN ADPIDIASST HDNDTMDSSS SGESGEEFTE SGSSEHESCH ELDDPQTPLV PVLSHGTSLS EAQEEKIAML IQEIRPEIPV YVAVMKYSNV KLRGSLVIAK HYASAHFPNT SQTITLESRD KNKKWHPKFY IRKDRSGYIL YGRWTEFVHD NRLKEGDICI FELTKFTGRN FRATVHLLRE TKSHSFGAFC SSPKRVDSGG RTRPRVSLTE GRCGTKGIST NSVKKEPDDG QCNKGEGKHQ EPLSSDDSGG SSESYLISQK ASLTKAQKRK VKEIACSYES EVPIYASVMN KSNVGTDGSY TIRFGKEFAT RYLPRGEQTL TLLMKGKSKA WQIKMCPRSG DAQMFTMDWR AFVHDNCLRI KDICLFQLMN NERRLTMTVH IIRHNDKN // ID A0A0D9VWG1_9ORYZ Unreviewed; 546 AA. AC A0A0D9VWG1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21760.3}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21760.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21760.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21760.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21760.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21760.3; LPERR03G21760.3; LPERR03G21760. DR Gramene; LPERR03G21760.3; LPERR03G21760.3; LPERR03G21760. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 445 543 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 445 543 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 546 AA; 61514 MW; A8792122A7D7A47B CRC64; MPTRRQRQWA ELRSSRGLAA SSFSNGVASA SARPRGSAGF FSPGLITTRH QLAELLCVKI IPNKFLDHFG GEILATIELE SPRVIVYIVK VTKHMNRTVL NCGWGAFVDA NQIEENDSLF FRHIENSRFE VLILDSDGCE KIFSRSGIKR AYNVQERNAD PIDIASSTHD NDTMDSSSSG ESGEEFTESG SSEHESCHEL DDPQTPLVPV LSHGTSLSEA QEEKIAMLIQ EIRPEIPVYV AVMKYSNVKL RGSLVIAKHY ASAHFPNTSQ TITLESRDKN KKWHPKFYIR KDRSGYILYG RWTEFVHDNR LKEGDICIFE LTKFTGRNFR ATVHLLRETK SHSFGAFCSS PKRVDSGGRT RPRVSLTEGR CGTKGISTNS VKKEPDDGQC NKGEGKHQEP LSSDDSGGSS ESYLISQKAS LTKAQKRKVK EIACSYESEV PIYASVMNKS NVGTDGSYTI RFGKEFATRY LPRGEQTLTL LMKGKSKAWQ IKMCPRSGDA QMFTMDWRAF VHDNCLRIKD ICLFQLMNNE RRLTMTVHII RHNDKN // ID A0A0D9VWG2_9ORYZ Unreviewed; 528 AA. AC A0A0D9VWG2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21760.4}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21760.4, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21760.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21760.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21760.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21760.2; LPERR03G21760.2; LPERR03G21760. DR EnsemblPlants; LPERR03G21760.4; LPERR03G21760.4; LPERR03G21760. DR Gramene; LPERR03G21760.2; LPERR03G21760.2; LPERR03G21760. DR Gramene; LPERR03G21760.4; LPERR03G21760.4; LPERR03G21760. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 427 525 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 427 525 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 528 AA; 59911 MW; DB04BF1217368782 CRC64; MDGQSSHTKK PCDCSNRYGD HLNVKMKCFH IQMSANFRHS MIIPNKFLDH FGGEILATIE LESPRVIVYI VKVTKHMNRT VLNCGWGAFV DANQIEENDS LFFRHIENSR FEVLILDSDG CEKIFSRSGI KRAYNVQERN ADPIDIASST HDNDTMDSSS SGESGEEFTE SGSSEHESCH ELDDPQTPLV PVLSHGTSLS EAQEEKIAML IQEIRPEIPV YVAVMKYSNV KLRGSLVIAK HYASAHFPNT SQTITLESRD KNKKWHPKFY IRKDRSGYIL YGRWTEFVHD NRLKEGDICI FELTKFTGRN FRATVHLLRE TKSHSFGAFC SSPKRVDSGG RTRPRVSLTE GRCGTKGIST NSVKKEPDDG QCNKGEGKHQ EPLSSDDSGG SSESYLISQK ASLTKAQKRK VKEIACSYES EVPIYASVMN KSNVGTDGSY TIRFGKEFAT RYLPRGEQTL TLLMKGKSKA WQIKMCPRSG DAQMFTMDWR AFVHDNCLRI KDICLFQLMN NERRLTMTVH IIRHNDKN // ID A0A0D9VWG6_9ORYZ Unreviewed; 598 AA. AC A0A0D9VWG6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21790.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21790.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21790.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21790.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21790.1; LPERR03G21790.1; LPERR03G21790. DR Gramene; LPERR03G21790.1; LPERR03G21790.1; LPERR03G21790. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 310 402 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 515 598 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 310 402 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 515 598 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 598 AA; 68818 MW; E6F5DDAAF9C069CE CRC64; MESGERTETW DKKTKLGRDG RVFLFGPGPL DTIPHKFAQN FGDKIQGMIK LKACNGNTFS VLVAKCSDKL VLTAGWAAFV SSHDIKIGDF LVFRYIGNSQ FEVKIFGPSG CVKASSHNAA KVAHDVQNMQ GDLIGISSRS DNNLLKQWLT TERQNQLEMD GTDKCNEKMK MKTENAFSSK DDQETPAASG YVLSCSQIPL TEVHRMKVKE KVRAVQSHHP VFVTVMKKSN ITRLPCHLIF STKYANKYLP REDQMLTLQR QGKRWQIGDT CLFEQLRNEN PFTMNKMRKP NTRSTERVEY YHCNRTDNQE KHFFKVMIDD FHKRMIIPEK FERHFKGVIT KTIKLETCND TLDVQITKKL NRLVLGSGWE SFVSAHGLKM GDFLVFKYNG NLLLQVLIFD PSGCEKSTSC CMKNAIDHVE QRWKEPTDVS TTCHDQPKKS PQNRNKHWMQ KDSTGKGHKI INIRSSSTPS NVSEHVETHF VAGCILPRRT FIPEVQENKM KETIQAINSK IPMYGNAITK YNIFGSSCAL EISRQYDDAY LPYHGQELIL RHHDKSWKVQ FCRYNHKSRK LTQGWKRFAH DNNLRIGDLC LFETLKKN // ID A0A0D9VWG8_9ORYZ Unreviewed; 264 AA. AC A0A0D9VWG8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G21810.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G21810.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G21810.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G21810.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G21810.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G21810.1; LPERR03G21810.1; LPERR03G21810. DR Gramene; LPERR03G21810.1; LPERR03G21810.1; LPERR03G21810. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 168 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 168 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 264 AA; 30190 MW; 94380F4A14CBF060 CRC64; MQICTCCSLT GMSGRKMNRG GVRSKEGGER CKEGDTIPNG FLYNFGGKIP KSVTLETSNG LTFDVQVNKN SDEVFLQSGW TSYARAHDLK RGDLLVFKYC GNSLFKTLIF NPNGCEKACS YLLKKNVTQE CDLVPGCITP AGYRLTRSQK KIMNKKTKAI NSENPIYGYV IIKSSIYGRP CTVEFSRKYA DVYLPFEDET LVLQRRGKRW NVRCKITKKK SRRFLKGWMQ FARDNNLCLG DICLFELLEN KTKYVMKVHI LRKK // ID A0A0D9VYE4_9ORYZ Unreviewed; 253 AA. AC A0A0D9VYE4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G27050.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR03G27050.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR03G27050.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR03G27050.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR03G27050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR03G27050.1; LPERR03G27050.1; LPERR03G27050. DR Gramene; LPERR03G27050.1; LPERR03G27050.1; LPERR03G27050. DR Proteomes; UP000032180; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 67 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 174 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 67 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 174 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 253 AA; 28868 MW; 2770CC3BCD527625 CRC64; MWLVLILTIP HKFAQNFGDK IQGMIKLKAC NAGWAAFVSS HEINIGDFLV FRYIGNSQFK VKIFGPSGCV ILSMFVRKPL MARQLSAPSR QKSGCVKASS HNAAKIGHDV QNMQGDLIGI SSSSDNNLLK QWLTTERQNQ LEKDGTDKCN EKMKTENAFS SKDDQETPAA SGYVLSRSQI PLTEVHRMKI FSRKYANKYP PHEDQMLTLQ RQGKRWQVQF YISKRNTRML SKGWKKFIRD NELQIGDTCL FNN // ID A0A0D9W330_9ORYZ Unreviewed; 437 AA. AC A0A0D9W330; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR04G04010.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G04010.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G04010.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G04010.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G04010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G04010.1; LPERR04G04010.1; LPERR04G04010. DR Gramene; LPERR04G04010.1; LPERR04G04010.1; LPERR04G04010. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 301 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 301 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 437 AA; 48579 MW; 43CCC4DFD3DA965A CRC64; MADARGSSSS GGGGVGRGQA GNGDFTADHS QHNNRYHGIL GAVPPPSFGR QNVMHHQYLT GMIHNPSPAM PLPVAPVPYM PQQYTMVPTP TMLPPQHHHG QSQISQGNFQ DWVPSNNGAV QHVPSASQDL RPMYNGPAFM SFGQTAAASN VYYQNLNPCT IDAWTSSNMP RNQVYSGFHP DAIQDHHAPP FHSNNHDTHR GFHTHTGFRV DQALVPASSP FPLVSSSSHN FSSAKISNEP TYSKKAKKSD VKDPPIVFRR NDMKSEKNDE LDQTLASEPP SINQNGALNV RFNCREYCAI LRKELTNSDV GNIGRIVISK RDAEAHLPAL DQREGQMLKM EDFKFEATWN FKYRFWPNNK SRMYVLESTG GFVKQHGLQT GDIFIIYKSS ESGKYIVRGE KAIKPNAVRP VVDCCCKNDL NNNEECRFTV SLQTKKT // ID A0A0D9W3K6_9ORYZ Unreviewed; 491 AA. AC A0A0D9W3K6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR04G05430.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G05430.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G05430.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G05430.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G05430.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G05430.1; LPERR04G05430.1; LPERR04G05430. DR Gramene; LPERR04G05430.1; LPERR04G05430.1; LPERR04G05430. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 190 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 392 491 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 190 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 392 491 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 491 AA; 53515 MW; A50F91EDADC2D68D CRC64; MACGQGSPAR MLSDVGMLGQ PLLGSSRQTE DAYGFVKMRA QKGLPAFRSV SIGGCNDSIS RPAMGSRGGD RRETGGGGAA VQLKVLVPSS FRRMRICDEL AARLGLGAVG GGRGQGDATR AAAVATARVV MVGSPVGKVW DIKVGRDGDG RAFLGRGWPD FAAAHGLGVG WFVVLRHRGG VLAVEAFDTT CCLKEFGADS SAFMTSGSGI ARKPQFLGVL LPDFMEKMRI PDKFVQHYLT EENLNSNTAN ILSSLGKSCH IELENDRSGV FLKGGWSQFL LFHGISRGDV ILFRYGGNLV FKINVFGLNG RQKDFRAKSI NIHQSTGKQQ EAPAFPRRKC KEKNKKFGKG NENQQESPCS WGVSCKKGRK SDRDRNSAKR SRSTYEIGSS AWIKKEINEY ILKRCLVSLA RTFCESIGFS EESTITLIEA EGENSCGSRS WEVAGRRDKE ACYLLGAGWK RFCEDNSLKV GDVCTFNVVD NTMWHVVIER S // ID A0A0D9W3K7_9ORYZ Unreviewed; 604 AA. AC A0A0D9W3K7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR04G05440.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G05440.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G05440.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G05440.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G05440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G05440.1; LPERR04G05440.1; LPERR04G05440. DR Gramene; LPERR04G05440.1; LPERR04G05440.1; LPERR04G05440. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 238 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 323 419 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 501 604 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 238 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 323 419 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 501 604 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 67423 MW; 55F9D4C5B11AAC3C CRC64; MEIEPPWSFG RQGIGHRWMV EQRETGERWR MGRFGADVLH ERGLNSPVRR GALLLAGADI PCRPCAADEA FRDRAAALFL AALAAAASFP TMCLASFRCG CEKDSETYGY LRGETRGKGR DFADFWRQNR QSKSPLRFWS QTHPSSGARS FSTCNSRQQR IDEAASPSVA AVGRFTSSGP VMPSPPCVDH GGAAKVTQLK VLMPSSFRNL HISDELAAQL LCGAGAPRAA ARVVSPFGKL WDVEVVGPRD VEGGRAFLGR GWPEFAAAHG LGVGWFVVLR HQGGGVLTVK VFDTTLCLND FGASLAAAVV AARCGRSRDA PHKPQFLRIL LPGYMEKMRI PDKFLQHHIT EEHLNSIMAY ILSPLGKVWR IELEKKEFGM FFKGGWSQFL SFHDISHGDV ILLRYEGNLV FKIKVFGLNG LKKDLKTKHY IIQHNTENKQ EPSSFSRSKS NPKNRRCGED NENQQEIPCS RKGSSKKRRS GGETERQRRS KSLYQIEPPS WIMKELNKYI LQRGNVSFPG TFCKSIGLVE KGIVTLMVKD SKGRCCSRWS WDVAVSVNKN GQGCCYLFGT GWKKFCKENS LKLGDVCIFN VVETTLWHVV IERS // ID A0A0D9W436_9ORYZ Unreviewed; 183 AA. AC A0A0D9W436; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR04G06900.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G06900.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G06900.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G06900.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G06900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G06900.1; LPERR04G06900.1; LPERR04G06900. DR Gramene; LPERR04G06900.1; LPERR04G06900.1; LPERR04G06900. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 183 AA; 19656 MW; 9945191FF8E12E19 CRC64; MATDPTATAP PQPPRFSSPE PAAAVHAAEK SISGDIAAVP EEEDPVSPAE KIPRPVVLPL LGKPYFSCIM CKSHVQQPFQ VVVPRSLAPF LPATTAPATL WWRGRSWGMR FTGGRMIQRL EAGWRGFAVD NDLRLGDGCL FELVDGGGER VEFRVQVLRA EIPAGIRGRA GGCTSATPIV IDD // ID A0A0D9W780_9ORYZ Unreviewed; 657 AA. AC A0A0D9W780; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G15300.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G15300.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G15300.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G15300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G15300.1; LPERR04G15300.1; LPERR04G15300. DR Gramene; LPERR04G15300.1; LPERR04G15300.1; LPERR04G15300. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 657 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 657 AA; 70291 MW; 0842619F9D3D6042 CRC64; MLTFTDLAAP TGDGGRCVGS QLWAACAGSM SSVPPVGAAV YYFPQGHAEQ ASAGVASDLL SAARVPPLVP CRVVAVRFMA DAETDEVFAR IRLAPLRPGD AVVDVGEAAA AAAEAEARQE EEGGGRATKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYSTEPPV QFVYAKDVHG EEWRFRHIYR GTPRRHLLTT GWSAFVNQKK LLAGDSIVFM RDEAGNVHVG IRRAKRGFGD DGEGLSSLPG WGLMRPNASA CGGNGAAKGG KVPPENVLAA ARMAASGQPF EVLYYPRAST PEFCVRASAV TTAMSVHWCP GMRFKMAFET EDSSRISWFM GTVAGVHPAD PIRWPQSPWR LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRIPPYS EFPLDAHQLF APAAPFLSNP MAAHGFPFLP FFPDSSSSSS SVQPAGIQGA RHAHFAPSFQ DLHTGGNLRP NLLLYSGIHL PTADHAAAPP PARIISTDLT IGSPIAPPDD DGAKPQGFLL FGQAILTEEQ IKNSGGTRKR SPNASEGSGS GITEGSPNNN HTPSPFNPPC SGHEVDLGQC KVYVQSEEVG RSLDISELSS FEELYARLSE MFSIDGDGMS HTRVVYNSLS GKDKHAGDEP FCATMGS // ID A0A0D9W781_9ORYZ Unreviewed; 674 AA. AC A0A0D9W781; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G15300.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G15300.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G15300.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G15300.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G15300.2; LPERR04G15300.2; LPERR04G15300. DR Gramene; LPERR04G15300.2; LPERR04G15300.2; LPERR04G15300. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 668 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 72135 MW; 9931E7A25A728AAD CRC64; MLTFTDLAAP TGDGGRCVGS QLWAACAGSM SSVPPVGAAV YYFPQGHAEQ ASAGVASDLL SAARVPPLVP CRVVAVRFMA DAETDEVFAR IRLAPLRPGD AVVDVGEAAA AAAEAEARQE EEGGGRATKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYSTEPPV QFVYAKDVHG EEWRFRHIYR GTPRRHLLTT GWSAFVNQKK LLAGDSIVFM RDEAGNVHVG IRRAKRGFGD DGEGLSSLPG WGLMRPNASA CGGNGAAKGG KVPPENVLAA ARMAASGQPF EVLYYPRAST PEFCVRASAV TTAMSVHWCP GMRFKMAFET EDSSRISWFM GTVAGVHPAD PIRWPQSPWR LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRIPPYS EFPLDAHQLF APAAPFLSNP MAAHGFPFLP FFPDSSSSSS SVQPAGIQGA RHAHFAPSFQ DLHTGGNLRP NLLLYSGIHL PTADHAAAPP PARIISTDLT IGSPIAPPDD DGAKPQGFLL FGQAILTEEQ IKNSGGTRKR SPNASEGSGS GITEGSPNNN HTPSPFNPPC SGHEVDLGQC KVYVQSEEVG RSLDISELSS FEELYARLSE MFSIDGDGMS HTRVVYNSLS GKDKHAGDEP FCEFLKSARK LTILIDAGSA TMGS // ID A0A0D9W8K3_9ORYZ Unreviewed; 376 AA. AC A0A0D9W8K3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR04G18630.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G18630.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G18630.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G18630.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G18630.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G18630.1; LPERR04G18630.1; LPERR04G18630. DR Gramene; LPERR04G18630.1; LPERR04G18630.1; LPERR04G18630. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 13 37 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 376 AA; 40097 MW; 7697512E589ACAFB CRC64; MEFTTPTTSS RFSKGEEEEE EEMEQEQDEE EEEAEASPRE IPFMTAAAGT ASSSSPTSVS PSAAASVAAS TSVSGSPPFR SSDGAGASGS GGGGGGGGEE VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRTGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAA EDTRDRLFID WKRRADGFDF RNINTAAVPA RQIVFFGSPG IPSPHAPLPP QPQPPPPMHP LHITVQPSPV VTTGLPMVLD SVAPHVNNPA AAASKRVRLF GVNLDNPHPD GGQSSGHDAL SLRMPGWQRP ATLRSLELSP HLAAGAAGAD QTSAASSPSS SSSSKREAHS SLDLDL // ID A0A0D9WAT5_9ORYZ Unreviewed; 899 AA. AC A0A0D9WAT5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G24160.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G24160.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G24160.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G24160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G24160.1; LPERR04G24160.1; LPERR04G24160. DR Gramene; LPERR04G24160.1; LPERR04G24160.1; LPERR04G24160. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 796 880 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99416 MW; 02C827649C59FB09 CRC64; MASSQEKAKS GVLRNAAALL DEMQLLGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GTYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RTSPSPFVIP VARYNKATYM QPSVGMRFAM MFETEESSKR RYTGTIVGIS DYDPMRWPNS KWRNLQVEWD EHGYGERPER VSIWDIETPE NTLAFPSTLT SKRQCLPGYG VPGLEIGSGN MSPFQRAQGN PYGNLQHIPA VGSELAIMLL NQSGQNLGIP HSYHQSSDAS IIQNVKQNYI PPLTISTSAC STKLESLPSD DDQRQFHMAN LQNGDLESSE AQPVIDSISQ SKLNVTSRDP RTTDSYPSRS LSEQNSKGEP RGKTRRSKKS MSHKTISEKS DLSSAPSWTC DNQQVGLESK LVSCGEQVNC GVVEDSSGAL TQGNFAGQPH CHQVEQNELL SPSPPKVESS KSPDGGKSVN SFPNQGCFSQ FIDGLDWMTQ PSYYQDSSAI HPVDASEHIL SSSADIPATV MADTMETFQA SCLSDCIPNS IQEFISSPDL NSLTFLSPEM QNLEVQLQHD GSNLPSTSNS LVQMSFSEES GNHSANLSGL HMESTHRSIN TTSCSQPLST GGFDTGMYSK LPHLKESQIL SLPEIHTNSM GTSACSMDAT EYNLDRSTKP VKPPVRTFTK VQKQGSVGRS IDVTGFRNYH ELRSAIACMF GLQGKLEHPG SSEWKLVYVD YENDVLLVGD DPWEEFINCV RCIRILSPSE VQQMSENGMH VLNDCIQTA // ID A0A0D9WAZ8_9ORYZ Unreviewed; 821 AA. AC A0A0D9WAZ8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G24670.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G24670.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G24670.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G24670.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G24670.1; LPERR04G24670.1; LPERR04G24670. DR Gramene; LPERR04G24670.1; LPERR04G24670.1; LPERR04G24670. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 722 806 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 821 AA; 91348 MW; 3E96E2EE44C7D4D0 CRC64; MSSSSAASIG PPPPPPPAPP EEEKKCLNSE LWHACAGPLV CLPTVGTRVV YFPQGHSEQV AASTNKEVEG HIPNYPNLPA QLICQLHDVT MHADVETDEV YAQMTLQPLN PQEQNDAYLP AEMGIMSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAERVF PPLDFTQQPP AQELIARDIH DIEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRASRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLSKY IKAVFHTRIS VGMRFRMLFE TEESSVRRYM GTITEVSDAD PVRWPSSYWR SVKVGWDEST AGERPPRVSL WEIEPLTTFP MYPSLFPLRV KHPWYSGVAS LHDDSNALMW LRGVAGEGGF QSLNFQSPGI GSWGQQRLHP SLLSTDHDQY QAVVAAAAAA SQSGGYLKQQ FLHLQQPMQS PQEHCNLNPL LQQQILQQAS QQQMISPEAQ NIQTMLSPSA IQQQLQQLQQ MQQVQNDQKQ KIQPDQTYQV PSSAVLPSPT SLPSHLREKF GFSDPNANSS SFITSSSSDN MLDSSFLQGS SKSVDLSRFN QPVASEQQQQ QQQQQQAWKQ KFMGSQSVSF GGSVLHNSPT SKDGSVENKI GRDVQNQSLF SPQVDSSSLL YNMVPNLTSN IADNNLSTIP SGSTYLQNAM YGCLDDSSGL LQNTGENDPT TRTFVKVYKS GSVGRSLDIT RFSNYAELRE ELGQMFGIKG QLDDPDRSGW QLVFVDREND VLLLGDDPWE SFVNSVWYIK ILSPEDVHKM GKQGNDPRYL S // ID A0A0D9WAZ9_9ORYZ Unreviewed; 769 AA. AC A0A0D9WAZ9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G24670.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G24670.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G24670.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G24670.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G24670.2; LPERR04G24670.2; LPERR04G24670. DR Gramene; LPERR04G24670.2; LPERR04G24670.2; LPERR04G24670. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 670 754 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 769 AA; 85606 MW; 2B2DA53C1632C4E2 CRC64; MSSSSAASIG PPPPPPPAPP EEEKKCLNSE LWHACAGPLV CLPTVGTRVV YFPQGHSEQV AASTNKEVEG HIPNYPNLPA QLICQLHDVT MHADVETDEV YAQMTLQPLN PDFTQQPPAQ ELIARDIHDI EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRASRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLSKYIK AVFHTRISVG MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRVKH PWYSGVASLH DDSNALMWLR GVAGEGGFQS LNFQSPGIGS WGQQRLHPSL LSTDHDQYQA VVAAAAAASQ SGGYLKQQFL HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ QMISPEAQNI QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI QPDQTYQVPS SAVLPSPTSL PSHLREKFGF SDPNANSSSF ITSSSSDNML DSSFLQGSSK SVDLSRFNQP VASEQQQQQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK DGSVENKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNIA DNNLSTIPSG STYLQNAMYG CLDDSSGLLQ NTGENDPTTR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK QGNDPRYLS // ID A0A0D9WBJ0_9ORYZ Unreviewed; 507 AA. AC A0A0D9WBJ0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G26090.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR04G26090.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR04G26090.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR04G26090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR04G26090.1; LPERR04G26090.1; LPERR04G26090. DR Gramene; LPERR04G26090.1; LPERR04G26090.1; LPERR04G26090. DR Proteomes; UP000032180; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 507 AA; 54442 MW; FB26FE53D82C252B CRC64; MARPPAPAAS SAPPPPVDPL VWLACAAPLS RIPVVGSQVY YFPEGHAEQC PAPLPEPLPP THQVFLCAVA AVRLAADATT GEPFATISLV PAVNLAADAT VSLLLPAVHL PTQGDQFRYY AKQLTQSDAN NGGGFSIPRS CAEKIFPALN LTDDPPVQNL AMTDLQGQPW KFRHIYRGTP RRHLLTTGWS RFVNAKLLVA GDTVVFMRRP DASLLIGVRR AARYTAGVSP CNARARVPPQ EVMDSARLAA EGAPFTVTYY PRQGAGEFVV PRAEVEKGLT ATDELRAGVQ VRAQVVETEE DPRRVSWLNG TVKNVSHRIW RNLQVEWDPS SSSFPMENRY VNPWQIQPVG FPPLPMGLQI QNSSTAPMPL PLELLPAGIQ GAWHHANAHA DIPSSSMLTT QPLFPRADLH ISVPPTFAAG SSHSGSSNNS ENTPEGMKTI QLFGVTITSP VAPMQCDTDD TSAYASASAQ VNQVPQGMDY ETASEGTSAT SPLDSLSNGQ NHDGARL // ID A0A0D9WHT1_9ORYZ Unreviewed; 308 AA. AC A0A0D9WHT1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR05G16310.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR05G16310.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR05G16310.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR05G16310.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR05G16310.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR05G16310.1; LPERR05G16310.1; LPERR05G16310. DR Gramene; LPERR05G16310.1; LPERR05G16310.1; LPERR05G16310. DR Proteomes; UP000032180; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 148 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34662 MW; 77011AE175D85F88 CRC64; MVRRRGGGGS VAAEAAGEAS GAAYEEERRK RVLENLKHLE DLGISKMSKS LLEAARLQKV QTTRASPKPR KKFEATEVRR SSRARNSVSY KDDFDELDSF LRRRRGGSRN TEQGRDYTGR IASYEQQQRA YKRAERIQNS LDPENPSFVK TMVRSHVSSC FWLGLPTRFC KLHLPPREFK MVLEDEEGGE FDSVYIGNRT GLSGGWRGFA MHKNLEDGDS LVFELVEPDR FKIYIIKAAD EDVNESEPVD EEADGDKKDT DTKDAVEQDD SPNAEPLKGA KRRKLCGRRS CLAFSSKAGS LTKKSASP // ID A0A0D9WHT2_9ORYZ Unreviewed; 302 AA. AC A0A0D9WHT2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR05G16310.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR05G16310.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR05G16310.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR05G16310.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR05G16310.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR05G16310.2; LPERR05G16310.2; LPERR05G16310. DR Gramene; LPERR05G16310.2; LPERR05G16310.2; LPERR05G16310. DR Proteomes; UP000032180; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 33734 MW; EF6837BD81D6D769 CRC64; MVRRRGGGGS VAAEAAGEAS GAAYEEERRK RVLENLKHLE DLGISKMSKS LLEAARLQKT TRASPKPRKK FEATEVRRSS RARNSVSLNV IDYLVVLNRG GSRNTEQGRD YTGRIASYEQ QQRAYKRAER IQNSLDPENP SFVKTMVRSH VSSCFWLGLP TRFCKLHLPP REFKMVLEDE EGGEFDSVYI GNRTGLSGGW RGFAMHKNLE DGDSLVFELV EPDRFKIYII KAADEDVNES EPVDEEADGD KKDTDTKDAV EQDDSPNAEP LKGAKRRKLC GRRSCLAFSS KAGSLTKKSA SP // ID A0A0D9WIM9_9ORYZ Unreviewed; 704 AA. AC A0A0D9WIM9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR05G18660.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR05G18660.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR05G18660.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR05G18660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR05G18660.1; LPERR05G18660.1; LPERR05G18660. DR Gramene; LPERR05G18660.1; LPERR05G18660.1; LPERR05G18660. DR Proteomes; UP000032180; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 704 AA; 76418 MW; 778A2D6132F44F17 CRC64; MGIDLNTVDE EESEASATPV VCGELWHACA GPGVALPRRG SAVVYLPQAH LATGGGGGGD VPPGAVAVPP HVACRVVDVE LRADAATDEV YARLALVAEG EMLRRNFHDG GGEDGAEETE GCDTEKKPRM PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLVIQLTSN LYDYKTIRPS QELIAMDLHG TQWKFRHIYR VLGKGQKGQP RRHLLTTGWS SFVNRKKLVS GDAVFFLRGD DGQLRLGVRR AVPLRNEALF EPVNSSDSKL RILSSVASSL ENKSIFHVCF NPRSGASEFI VPYWRFTKSL NHPFSIGMRF KICYEGEDSN ERSSGLVSSI SEVDPIRWPG SRWKCLVVRW DDSTDSSHQN RVSPWDIERV SGSVSATHSL SSSSSKRTKL HFPQGNLDTP FLNGNGNPDS METGNFHRVL QGQEFRGSRS LGAVCSEPPG VPFFQAPDNR RFSADMQGYM MPASGPLRQN TQFTYQPVGF GESLRFPEVL QGQEMSQAVP LFRGASFGAH TQNGRVVSAN SLPRSAAPTG FPAATQGLPV SQFALSASKV SSPSSVLMFN QATAPHLEPE SGTNNKGIHG SQFFSQEMLI DTVTWPGIQH KMSSEITSNP FAMAKTSAPS SRAESGSPKR DSGRSSCRLF GFSLTENMLG EEGEGLEEES NKADCQGPRV LELFGRRHST PGALRALCAA PLGI // ID A0A0D9WJD8_9ORYZ Unreviewed; 387 AA. AC A0A0D9WJD8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR05G20600.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR05G20600.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR05G20600.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR05G20600.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR05G20600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR05G20600.1; LPERR05G20600.1; LPERR05G20600. DR Gramene; LPERR05G20600.1; LPERR05G20600.1; LPERR05G20600. DR Proteomes; UP000032180; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 127 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 203 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 127 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 203 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 387 AA; 41216 MW; 11290ED79443213A CRC64; MDSTSCLLDD ASSGASTAKK SSPAATSSKP LHRVGSGGGS SAVMDAAEPG AEADSGGERR AAAAGNKLPS SRYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR DAVTNFRPLA ESDPDAAVEL RFLASRTKAE VVDMLRKHTY PDELSQFRRA FAAISPRPSP PSPSPASNTL LSGSTAAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQISPATIAG VSGGGGGGGE CKGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSAAAAA GKQAQLFIDC KLRRQKQQFP AAVKAIRLFG VDLLTAAAAS PEKHAGGKRG MEAIAESQSK SQSHVVFKKQ CIELALT // ID A0A0D9WJQ6_9ORYZ Unreviewed; 720 AA. AC A0A0D9WJQ6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR05G21420.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR05G21420.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR05G21420.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR05G21420.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR05G21420.1; LPERR05G21420.1; LPERR05G21420. DR EnsemblPlants; LPERR05G21420.2; LPERR05G21420.2; LPERR05G21420. DR EnsemblPlants; LPERR05G21420.3; LPERR05G21420.3; LPERR05G21420. DR Gramene; LPERR05G21420.1; LPERR05G21420.1; LPERR05G21420. DR Gramene; LPERR05G21420.2; LPERR05G21420.2; LPERR05G21420. DR Gramene; LPERR05G21420.3; LPERR05G21420.3; LPERR05G21420. DR Proteomes; UP000032180; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 720 AA; 78751 MW; F56F530930071C42 CRC64; MAGIDLNTVE EDEEEAAAAA EKVAAAANFS PAPAARTSAV CLELWHACAG PVLPLPRKGS VVVYLPQGHL DHLADASSSA AAAAAAVQPH VFCRVVDVTL LADAATDEVY AQLSLVPEKE EVARRTEDGD GEEDGDAATK QRFARMPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YSQQRPSQEL VAKDLHGTEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD DGELRLGVRR AAQLKNGSAF PALYNQCSNL GTLANVAHAV GTESVFNIYY NPRLSQSEFI VPYWKFMKSL SQPFAVGMRF KMRYESEDAT ERRYTGIITG SGDTDPMWHG SKWKCLLVRW DDDAEFRRPN RVSPWEIELT SSVSGSHLST PHSKRLKPCL PHVNPDYMAP HGGGCPDFAE SAQFHKVLQG QELLGFKSHG GTAVATSQPC EARHLQYINE RSCSNDASNS ILGVPRLGDR APLGNQGFPY HCSGFGESQR LQKVLQGQEV FRPYRGTLVD ASIGSNGFHQ QDGPRAPGVV NKWHAQLHGR AAFHGPPAPA IPSQSSSPPS VLMFQQANSK MPRFEFGLGQ LDRRESDGRV RLVPSEGIER REQRIPPQPY PTPGEVIDGQ PTVEKSHSPG RVGKDGPDNK AVGTNSCKIF GISLTETVPA REELDHGDAN YSLQSLKQVP KSLGNSCATV HEQRPVVGRV IDISTMDMMI // ID A0A0D9WKW6_9ORYZ Unreviewed; 200 AA. AC A0A0D9WKW6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR06G00460.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G00460.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G00460.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G00460.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G00460.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G00460.1; LPERR06G00460.1; LPERR06G00460. DR Gramene; LPERR06G00460.1; LPERR06G00460.1; LPERR06G00460. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 200 AA; 21770 MW; 98967FA7B696F19F CRC64; MAVSTAIVGW ESSRREKLQG GGHGGGGERR EHMFEKVVTP SDVGKLNRLV VPKQYAEKYF PLGAAARSSP AGTVLCFEDA GGGGETWRFR YSYWSSSQSY VITKGWSRFV RDKRLAAGDT VSFCRGSGGR LFIDCRRRAD SSTSLSPVAA AALIKAQRPP SMSVVVDEKE VVHGGGRRCL RLFGVDLQLR AETPALDLQL // ID A0A0D9WKZ3_9ORYZ Unreviewed; 431 AA. AC A0A0D9WKZ3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR06G00620.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G00620.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G00620.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G00620.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G00620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0D9WKZ3; -. DR EnsemblPlants; LPERR06G00620.1; LPERR06G00620.1; LPERR06G00620. DR Gramene; LPERR06G00620.1; LPERR06G00620.1; LPERR06G00620. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR Pfam; PF02362; B3; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 315 411 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 315 411 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 46469 MW; 02F4F7CD4702769A CRC64; MAPPSDDSPP LPAGAISNLL IVIAMQTEAL PLVNKFHLVE APSNESIFPK GAPWIRYHGN YKGLHIDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGAGIG DVFLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE SAIQNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL DKSVTEVMKD DVLELMDSPS KQMMQADASY TNLTGIIKPK VESCDDDDEL LPAPPASGSE DWEVTTPIGT GNPFFTTVIS RSHLRNKYQM WVPHRFQRRL PEARTGVVLH CGGKSWPASY CGDLKVKKID VAGWSNFAVD NRLRVGDACV FELIAAADTH LELKVQILRG DLPEEVTSKG ATSDEPILID D // ID A0A0D9WKZ4_9ORYZ Unreviewed; 423 AA. AC A0A0D9WKZ4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR06G00620.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G00620.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G00620.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G00620.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G00620.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G00620.2; LPERR06G00620.2; LPERR06G00620. DR Gramene; LPERR06G00620.2; LPERR06G00620.2; LPERR06G00620. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR Pfam; PF02362; B3; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 307 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 307 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 423 AA; 45525 MW; 6B87587E283F4611 CRC64; MAPPSDDSPP LPAGAISNLL IVIAMQTEAL PLVNKFHLVE APSNESIFPK GAPWIRYHGN YKGLHIDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGAGIG DVFLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE SAIQNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL DKSVTEVMDS PSKQMMQADA SYTNLTGIIK PKVESCDDDD ELLPAPPASG SEDWEVTTPI GTGNPFFTTV ISRSHLRNKY QMWVPHRFQR RLPEARTGVV LHCGGKSWPA SYCGDLKVKK IDVAGWSNFA VDNRLRVGDA CVFELIAAAD THLELKVQIL RGDLPEEVTS KGATSDEPIL IDD // ID A0A0D9WMV9_9ORYZ Unreviewed; 230 AA. AC A0A0D9WMV9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR06G05590.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G05590.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G05590.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G05590.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G05590.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G05590.1; LPERR06G05590.1; LPERR06G05590. DR EnsemblPlants; LPERR06G05590.2; LPERR06G05590.2; LPERR06G05590. DR Gramene; LPERR06G05590.1; LPERR06G05590.1; LPERR06G05590. DR Gramene; LPERR06G05590.2; LPERR06G05590.2; LPERR06G05590. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 26555 MW; BF50BE28AB631979 CRC64; MADAASYEEQ RRRQVEENKR KLDELRLHQL SAAVRESGPR PSPVKPRKRK ERAAAGAGED VPLRRSGRVA SLPEKPKYQD EFHDFERKIR RSYGGKRRNL SGRVYATEKE REHAIATAED LEKELGSDHP IFIKPMLQSH VTGGFWLGLP TQFSRKYLPK RDETICLVDE EDDEFDTLYL AHKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTRFKVYII RASSLYESDN // ID A0A0D9WMX3_9ORYZ Unreviewed; 1437 AA. AC A0A0D9WMX3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G05720.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G05720.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G05720.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G05720.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the GroES chaperonin family. CC {ECO:0000256|RuleBase:RU003479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G05720.1; LPERR06G05720.1; LPERR06G05720. DR Gramene; LPERR06G05720.1; LPERR06G05720.1; LPERR06G05720. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd00320; cpn10; 2. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.30.33.40; -; 2. DR Gene3D; 2.40.330.10; -; 1. DR HAMAP; MF_00580; CH10; 2. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR020818; Chaperonin_GroES. DR InterPro; IPR018369; Chaprnonin_Cpn10_CS. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00166; Cpn10; 2. DR PRINTS; PR00297; CHAPERONIN10. DR SMART; SM01019; B3; 1. DR SMART; SM00883; Cpn10; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50129; SSF50129; 2. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS00681; CHAPERONINS_CPN10; 2. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Chaperone {ECO:0000256|RuleBase:RU003479}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 945 1029 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1437 AA; 157167 MW; E11A08A66268E541 CRC64; MKDQGSSGVS PGPAEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYERDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASPTVQSP YLTSNTLAMQ DVMGSSNEDP TKRLNAQAQN IVLPNLQVGS KVDHPVMTQH QQQQHQLAQQ QQHQLAQQQQ QVQPSQQSSV VLQQHQAQLM QQNAIHLQQQ QEHLQRQQSQ PTQQLKTAAS LHSVEQHKLK EQTSGGQVAS QAQLLNQIFP PSSSQLQQLG LPKSPTQRQG LTGLPISGSL QQPTLTQTSQ AQQAAEYQQA LLQSQQHQLQ QLSQPEVQLQ LLQKIQQQNM LSQLNPQHQS QLIQQLSQKS QEILQQQILQ HQFGGSDAVG QLKQSPSQQT PLNHIAGSLT PQQLVRSHSA LAESGEPSSS TAPSASRISP MNSLGRAHQG SRNFSDMVAT PHIDSLLQEI QSKPDNRIKN DIHSKETVAI PNRHPVSDQL DASSATSFCL DESPREGFSF PPVCLDNNVQ VDPRDSFLIA ENVDAMMPDA LLSRGMASGK GMCNLTSGQR DHRDVENELS SAAFSSQSFG VPDMSFKPGC SSDVAVADAG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYRDYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVGCVK SIKILSAAEV QQMSLDGDLG GVPSQTQACS ASDDANAWRV SKAAYLDRSD QVVRPDSTTF QNHLVRPNPV AAAPTGNLSL WNTVPHPNPL TTPRIPNPAD SKPEQDKPGG FEINHCSAFA VGFIPLLLLV FLPSSHAKAQ PDSSAEPTRF EANREVSQLF SQQLRMSSVQ LSGAGVAAVA FTKKGASSFD GLRLAPPSAR VCSSRRPSRS LVVKAATVVT PKYTSLKPLG DRVLVKLGAA EEKTVGGILL PTTAQSKPQG GEVVAVGEGK TIGDKKVEVS VPIGAEVVYS KYAGTEVEFN DSKHLLLKED DIIGILESDD AKDMKPLSDR VLIKVAEAED KTAGGLILTE TTKEKPSIGT VVAVGPGPLD DEGKRQPLSV SAGSTVLYSK YAGSEFKGAD GTNYIVLRVS DVMAVLS // ID A0A0D9WMX4_9ORYZ Unreviewed; 1394 AA. AC A0A0D9WMX4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G05720.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G05720.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G05720.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G05720.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the GroES chaperonin family. CC {ECO:0000256|RuleBase:RU003479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G05720.2; LPERR06G05720.2; LPERR06G05720. DR Gramene; LPERR06G05720.2; LPERR06G05720.2; LPERR06G05720. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd00320; cpn10; 2. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.30.33.40; -; 2. DR Gene3D; 2.40.330.10; -; 1. DR HAMAP; MF_00580; CH10; 2. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR020818; Chaperonin_GroES. DR InterPro; IPR018369; Chaprnonin_Cpn10_CS. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00166; Cpn10; 2. DR PRINTS; PR00297; CHAPERONIN10. DR SMART; SM01019; B3; 1. DR SMART; SM00883; Cpn10; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50129; SSF50129; 2. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS00681; CHAPERONINS_CPN10; 2. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Chaperone {ECO:0000256|RuleBase:RU003479}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 945 1029 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1394 AA; 152544 MW; 0D3474954501A23F CRC64; MKDQGSSGVS PGPAEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYERDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASPTVQSP YLTSNTLAMQ DVMGSSNEDP TKRLNAQAQN IVLPNLQVGS KVDHPVMTQH QQQQHQLAQQ QQHQLAQQQQ QVQPSQQSSV VLQQHQAQLM QQNAIHLQQQ QEHLQRQQSQ PTQQLKTAAS LHSVEQHKLK EQTSGGQVAS QAQLLNQIFP PSSSQLQQLG LPKSPTQRQG LTGLPISGSL QQPTLTQTSQ AQQAAEYQQA LLQSQQHQLQ QLSQPEVQLQ LLQKIQQQNM LSQLNPQHQS QLIQQLSQKS QEILQQQILQ HQFGGSDAVG QLKQSPSQQT PLNHIAGSLT PQQLVRSHSA LAESGEPSSS TAPSASRISP MNSLGRAHQG SRNFSDMVAT PHIDSLLQEI QSKPDNRIKN DIHSKETVAI PNRHPVSDQL DASSATSFCL DESPREGFSF PPVCLDNNVQ VDPRDSFLIA ENVDAMMPDA LLSRGMASGK GMCNLTSGQR DHRDVENELS SAAFSSQSFG VPDMSFKPGC SSDVAVADAG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYRDYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVGCVK SIKILSAAEV QQMSLDGDLG GVPSQTQACS ASDDANAWRV SKAAYLDRSD QVVRPDSTTF QNHLVRPNPV AAAPTGNLSL WNTVPHPNPL TTPRIPNPAD SKPEQDKPGG FEINQLFSQQ LRMSSVQLSG AGVAAVAFTK KGASSFDGLR LAPPSARVCS SRRPSRSLVV KAATVVTPKY TSLKPLGDRV LVKLGAAEEK TVGGILLPTT AQSKPQGGEV VAVGEGKTIG DKKVEVSVPI GAEVVYSKYA GTEVEFNDSK HLLLKEDDII GILESDDAKD MKPLSDRVLI KVAEAEDKTA GGLILTETTK EKPSIGTVVA VGPGPLDDEG KRQPLSVSAG STVLYSKYAG SEFKGADGTN YIVLRVSDVM AVLS // ID A0A0D9WMX5_9ORYZ Unreviewed; 1355 AA. AC A0A0D9WMX5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G05720.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G05720.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G05720.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G05720.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the GroES chaperonin family. CC {ECO:0000256|RuleBase:RU003479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G05720.3; LPERR06G05720.3; LPERR06G05720. DR Gramene; LPERR06G05720.3; LPERR06G05720.3; LPERR06G05720. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd00320; cpn10; 2. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.30.33.40; -; 2. DR Gene3D; 2.40.330.10; -; 1. DR HAMAP; MF_00580; CH10; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR020818; Chaperonin_GroES. DR InterPro; IPR018369; Chaprnonin_Cpn10_CS. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00166; Cpn10; 2. DR PRINTS; PR00297; CHAPERONIN10. DR SMART; SM01019; B3; 1. DR SMART; SM00883; Cpn10; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50129; SSF50129; 2. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS00681; CHAPERONINS_CPN10; 2. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Chaperone {ECO:0000256|RuleBase:RU003479}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 945 1029 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1355 AA; 148316 MW; 856C65E35B54AD93 CRC64; MKDQGSSGVS PGPAEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYERDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASPTVQSP YLTSNTLAMQ DVMGSSNEDP TKRLNAQAQN IVLPNLQVGS KVDHPVMTQH QQQQHQLAQQ QQHQLAQQQQ QVQPSQQSSV VLQQHQAQLM QQNAIHLQQQ QEHLQRQQSQ PTQQLKTAAS LHSVEQHKLK EQTSGGQVAS QAQLLNQIFP PSSSQLQQLG LPKSPTQRQG LTGLPISGSL QQPTLTQTSQ AQQAAEYQQA LLQSQQHQLQ QLSQPEVQLQ LLQKIQQQNM LSQLNPQHQS QLIQQLSQKS QEILQQQILQ HQFGGSDAVG QLKQSPSQQT PLNHIAGSLT PQQLVRSHSA LAESGEPSSS TAPSASRISP MNSLGRAHQG SRNFSDMVAT PHIDSLLQEI QSKPDNRIKN DIHSKETVAI PNRHPVSDQL DASSATSFCL DESPREGFSF PPVCLDNNVQ VDPRDSFLIA ENVDAMMPDA LLSRGMASGK GMCNLTSGQR DHRDVENELS SAAFSSQSFG VPDMSFKPGC SSDVAVADAG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYRDYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVGCVK SIKILSAAEV QQMSLDGDLG GVPSQTQACS ASDDANAWRG FIPLLLLVFL PSSHAKAQPD SSAEPTRFEA NREVSQLFSQ QLRMSSVQLS GAGVAAVAFT KKGASSFDGL RLAPPSARVC SSRRPSRSLV VKAATVVTPK YTSLKPLGDR VLVKLGAAEE KTVGGILLPT TAQSKPQGGE VVAVGEGKTI GDKKVEVSVP IGAEVVYSKY AGTEVEFNDS KHLLLKEDDI IGILESDDAK DMKPLSDRVL IKVAEAEDKT AGGLILTETT KEKPSIGTVV AVGPGPLDDE GKRQPLSVSA GSTVLYSKYA GSEFKGADGT NYIVLRVSDV MAVLS // ID A0A0D9WMX6_9ORYZ Unreviewed; 1295 AA. AC A0A0D9WMX6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G05720.4, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G05720.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G05720.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G05720.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the GroES chaperonin family. CC {ECO:0000256|RuleBase:RU003479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G05720.4; LPERR06G05720.4; LPERR06G05720. DR Gramene; LPERR06G05720.4; LPERR06G05720.4; LPERR06G05720. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd00320; cpn10; 2. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.30.33.40; -; 2. DR Gene3D; 2.40.330.10; -; 1. DR HAMAP; MF_00580; CH10; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR020818; Chaperonin_GroES. DR InterPro; IPR018369; Chaprnonin_Cpn10_CS. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00166; Cpn10; 2. DR PRINTS; PR00297; CHAPERONIN10. DR SMART; SM01019; B3; 1. DR SMART; SM00883; Cpn10; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50129; SSF50129; 2. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS00681; CHAPERONINS_CPN10; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Chaperone {ECO:0000256|RuleBase:RU003479}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 945 1029 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1295 AA; 142216 MW; 2D04E1059A1FCB8F CRC64; MKDQGSSGVS PGPAEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYERDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASPTVQSP YLTSNTLAMQ DVMGSSNEDP TKRLNAQAQN IVLPNLQVGS KVDHPVMTQH QQQQHQLAQQ QQHQLAQQQQ QVQPSQQSSV VLQQHQAQLM QQNAIHLQQQ QEHLQRQQSQ PTQQLKTAAS LHSVEQHKLK EQTSGGQVAS QAQLLNQIFP PSSSQLQQLG LPKSPTQRQG LTGLPISGSL QQPTLTQTSQ AQQAAEYQQA LLQSQQHQLQ QLSQPEVQLQ LLQKIQQQNM LSQLNPQHQS QLIQQLSQKS QEILQQQILQ HQFGGSDAVG QLKQSPSQQT PLNHIAGSLT PQQLVRSHSA LAESGEPSSS TAPSASRISP MNSLGRAHQG SRNFSDMVAT PHIDSLLQEI QSKPDNRIKN DIHSKETVAI PNRHPVSDQL DASSATSFCL DESPREGFSF PPVCLDNNVQ VDPRDSFLIA ENVDAMMPDA LLSRGMASGK GMCNLTSGQR DHRDVENELS SAAFSSQSFG VPDMSFKPGC SSDVAVADAG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYRDYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVGCVK SIKILSAAEV QQMSLDGDLG GVPSQTQACS ASDDANAWRG FIPLLLLVFL PSSHAKAQPD SSAEPTRFEA NREVSQLFSQ QLRMSSVQLS GAGVAAVAFT KKGASSFDGL RLAPPSARVC SSRRPSRSLV VKAATVVTPK IGAEVVYSKY AGTEVEFNDS KHLLLKEDDI IGILESDDAK DMKPLSDRVL IKVAEAEDKT AGGLILTETT KEKPSIGTVV AVGPGPLDDE GKRQPLSVSA GSTVLYSKYA GSEFKGADGT NYIVLRVSDV MAVLS // ID A0A0D9WPL8_9ORYZ Unreviewed; 424 AA. AC A0A0D9WPL8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR06G10590.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G10590.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G10590.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G10590.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G10590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G10590.1; LPERR06G10590.1; LPERR06G10590. DR Gramene; LPERR06G10590.1; LPERR06G10590.1; LPERR06G10590. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 367 415 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 424 AA; 47728 MW; 34A90FD007ABF57F CRC64; MEKKTPLVHQ RLALLDSSSG SDKDDDFEPG AVAIDYDDMD DVVVVGAAPL KVPVKVQNNC VSAQECRGSA MERAKELQAN LQAEYPSFIK NMLQSHVVRG FWLGLPSDFC NKHLPKNDTG LVLEEANGNC HDTTFLGGKQ GLSAGWRGFA LKHDIIVGDV VVFQLVYIVR ETNLTTADGV LGLMSFATRK KRKISTKEKR SDNFKSEDPK TCRNSTKGDH NDNQNLVSEA IDGIRFSKSE ISFDDVTSFS NFNIIVDGLV IDCKFPDHER MMYYEICCSQ KSFLHNHLLK HLNFKLVVGV IMETIKIAEG IRACKADNSS YDDFLVWKKT LQSFELLGMK VAFLIKRIDD LLCLPAQPRD PSECSKYKDI KLARSRAREK MKALESKFSS LTDELKKMDD EMEELESSVR KHDIALKKIA TAPW // ID A0A0D9WSC2_9ORYZ Unreviewed; 402 AA. AC A0A0D9WSC2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR06G18130.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G18130.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G18130.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G18130.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G18130.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G18130.1; LPERR06G18130.1; LPERR06G18130. DR Gramene; LPERR06G18130.1; LPERR06G18130.1; LPERR06G18130. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 129 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 340 402 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 129 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 340 402 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 402 AA; 44758 MW; 184598E6D1800B1D CRC64; MALSAGCFRR RPKLAAPLLS PTCLRRLSVP GEFAAALAGD EVLVVGPLGK VWRVEMCREA ADGDGEEEAC WWLGGGGWAE MAAAYGLGEG WSVVLRLERR GVASLRAFDP DCCLASFCTP HPGIKSKDRP RFIKLLQQED LEKMKIPGKF VHKHLTEAFT NSQQNAIIVC PLGKFWRVEL EREQPDVLLQ DGWPAFLVAH DLSEGNILLF RYEGNMVFMV QVFLENGCPK EYKTTTLYLT DGSKGPSNAL QQSVTKVAVS PAKKKRRQRN EGICLEGSNR KSRASPISVK KVKVEPQKKY ASIVSQNSFT KEMTAYSIRS LLALGGMFCS QIGLLEACSI TLKISMQKKG SWRVAFKTAN TYGYINGPGW RKFCLENEVK EGDRCTFNAI KRTLWHVSIV HC // ID A0A0D9WT90_9ORYZ Unreviewed; 942 AA. AC A0A0D9WT90; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G20540.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G20540.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G20540.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G20540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G20540.1; LPERR06G20540.1; LPERR06G20540. DR Gramene; LPERR06G20540.1; LPERR06G20540.1; LPERR06G20540. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 811 895 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 942 AA; 104940 MW; 4214ED113FB308EB CRC64; MKKKPITLVA RVIAKQQRKK QKQKQKRKRE RKMRLSSSSG SVLPTQASSP EAVEEQKCLN SELWHACAGP LVSLPAVGSR VVYFPQGHSE QVAASTNKEM ESQIPNYPNL PPQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPY LPAELGTANK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIAKD LHGNEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNDNNQL LLGIRRANRP QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RASPSEFVIP LAKYVKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDAARWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPT GLPSLHGGKE DDLTSSLMWL RESANPGFQS LNFGGLGMSP WMQPRLDTSL LGLQPDMYQT MAAAAFQDPT KQVSPTMLQF QQPQNIGGRA NPLLASQILQ QVQPQFQQHQ YLQNINETTI QGQTQTEFLQ QQLQRCQSFT EQKPQLQTQQ QQQESQQQQQ QQSQCMQVQQ HQQMQQQKNM TNYQSVSNAL SPFSQLSSAS QSSPMTLQTI LPFSQPQSFP DTNMSSLSPS NTSTIHNNTL RPFSSEAPSH LSMPRPTAIP VADPWSSKRV AVESLLPSRP QVTSQIEQLD STPPGIPQSS ALAPLPGRGC LVDQDGNSDP QNHLLFGVNI DSQSLLMQGG IPNLQGENDS TAIPYSTSNF LSPSQNDFPL DQTLNSADCL DESGYVPCSQ NSDQVINRPP ATFVKVYKSG TYGRSLDITR FSSYHELRRE LGRLFGLEGQ LENPLRSGWQ LVFVDREDDV LLVGDDPWQE FVNSVSCIKI LSPQEVQQMG KPFELLSSAP GKRLGSSCDD YVSRQESRSL STGIASVGSV EF // ID A0A0D9WT91_9ORYZ Unreviewed; 910 AA. AC A0A0D9WT91; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G20540.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G20540.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G20540.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G20540.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G20540.2; LPERR06G20540.2; LPERR06G20540. DR Gramene; LPERR06G20540.2; LPERR06G20540.2; LPERR06G20540. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 779 863 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 910 AA; 100970 MW; 0119B89545D8F103 CRC64; MRLSSSSGSV LPTQASSPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRA SPSEFVIPLA KYVKAVYHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDAARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSPFPL RLKRPWPTGL PSLHGGKEDD LTSSLMWLRE SANPGFQSLN FGGLGMSPWM QPRLDTSLLG LQPDMYQTMA AAAFQDPTKQ VSPTMLQFQQ PQNIGGRANP LLASQILQQV QPQFQQHQYL QNINETTIQG QTQTEFLQQQ LQRCQSFTEQ KPQLQTQQQQ QESQQQQQQQ SQCMQVQQHQ QMQQQKNMTN YQSVSNALSP FSQLSSASQS SPMTLQTILP FSQPQSFPDT NMSSLSPSNT STIHNNTLRP FSSEAPSHLS MPRPTAIPVA DPWSSKRVAV ESLLPSRPQV TSQIEQLDST PPGIPQSSAL APLPGRGCLV DQDGNSDPQN HLLFGVNIDS QSLLMQGGIP NLQGENDSTA IPYSTSNFLS PSQNDFPLDQ TLNSADCLDE SGYVPCSQNS DQVINRPPAT FVKVYKSGTY GRSLDITRFS SYHELRRELG RLFGLEGQLE NPLRSGWQLV FVDREDDVLL VGDDPWQEFV NSVSCIKILS PQEVQQMGKP FELLSSAPGK RLGSSCDDYV SRQESRSLST GIASVGSVEF // ID A0A0D9WT92_9ORYZ Unreviewed; 916 AA. AC A0A0D9WT92; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G20540.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G20540.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G20540.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G20540.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G20540.3; LPERR06G20540.3; LPERR06G20540. DR Gramene; LPERR06G20540.3; LPERR06G20540.3; LPERR06G20540. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 785 869 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 916 AA; 101597 MW; 613BE7E04DF5A44F CRC64; MRLSSSSGSV LPTQASSPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQG QLLSQVAAST NKEMESQIPN YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPQEL KDPYLPAELG TANKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL IAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND NNQLLLGIRR ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRASPSE FVIPLAKYVK AVYHTRISVG MRFRMLFETE ESSVRRYMGT ITGISDLDAA RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSPFPLRLKR PWPTGLPSLH GGKEDDLTSS LMWLRESANP GFQSLNFGGL GMSPWMQPRL DTSLLGLQPD MYQTMAAAAF QDPTKQVSPT MLQFQQPQNI GGRANPLLAS QILQQVQPQF QQHQYLQNIN ETTIQGQTQT EFLQQQLQRC QSFTEQKPQL QTQQQQQESQ QQQQQQSQCM QVQQHQQMQQ QKNMTNYQSV SNALSPFSQL SSASQSSPMT LQTILPFSQP QSFPDTNMSS LSPSNTSTIH NNTLRPFSSE APSHLSMPRP TAIPVADPWS SKRVAVESLL PSRPQVTSQI EQLDSTPPGI PQSSALAPLP GRGCLVDQDG NSDPQNHLLF GVNIDSQSLL MQGGIPNLQG ENDSTAIPYS TSNFLSPSQN DFPLDQTLNS ADCLDESGYV PCSQNSDQVI NRPPATFVKV YKSGTYGRSL DITRFSSYHE LRRELGRLFG LEGQLENPLR SGWQLVFVDR EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPFELL SSAPGKRLGS SCDDYVSRQE SRSLSTGIAS VGSVEF // ID A0A0D9WTE6_9ORYZ Unreviewed; 765 AA. AC A0A0D9WTE6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G21020.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G21020.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G21020.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G21020.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G21020.1; LPERR06G21020.1; LPERR06G21020. DR Gramene; LPERR06G21020.1; LPERR06G21020.1; LPERR06G21020. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 194 296 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 679 762 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 194 296 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 765 AA; 83358 MW; 86BFC8F3D83E0E1A CRC64; MSAAVWGNLE AAAHLRERQK QQSRAEREER VAEQGKIELC CRDCPFKFII LQAADQITEE DFYKMITFVD SAAKERERES TDNKCLDPQL WHACAGGMVQ MPPVSSKVYY FPQGHAEHAQ AVDFPSGAGR VPPLILCRVA GVRFMADPDT DEVFAKIRLV PVRANDGAAD DGGIGAGTDA AAAAAAAEEK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF MRTDNGDLCV GIRRAKKGGV GCPELPPPIS PAAANYGGGG FSMFLRGGDD DCSNNKMSPA ARGKIRARVR PEEVVEAANL AVSGQPFEVV YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK LCVPLYPELP IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLTDLHL NKLQSSLSPH GFHQLDHGIQ PRIAAGLIIG HPTARDDISC LLTIGTPQNN KKSDGKKAPA QLMLFGKPIL TEQQISLGDA APMAVRKSSS DGDAEKTVNK SNSDVSSPRS NLNGATDNMS CGGVPLCQDN KVLDVGLETG HCKVFMQSED VGRTLDLSVV SSYEELYRRL ADMFGIEKAE LMSHVFYRDA AGALKHTGDE PFSEFTKTAR RLNILTDTSG DNLAR // ID A0A0D9WTU4_9ORYZ Unreviewed; 986 AA. AC A0A0D9WTU4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR06G22130.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR06G22130.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR06G22130.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR06G22130.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR06G22130.1; LPERR06G22130.1; LPERR06G22130. DR Gramene; LPERR06G22130.1; LPERR06G22130.1; LPERR06G22130. DR Proteomes; UP000032180; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 852 936 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 986 AA; 108173 MW; 7EE46CF82D972C97 CRC64; MMKQPQQQPA SSPATATTSA MAAAAAAAPA VGNGGEGEKK APAINSELWH ACAGPLVSLP PAGSLVVYFP QGHSEQVAAS MQKDVDAHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPPTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDEESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQSSSFANTA MQSEYLRSLS NPNLQNLGAA DLSRQLSMQN QLFQQNNIQF NSPKLSQQMQ PVDELSKATI PLNQLGLSNS QTLPQQQMMP QQSTKVPSQN TPLPLPVQQE PQQKLLQKQA MLADTSEAAV PPTTSANVIA TTGSPLMTTG ATHSVLTDEI PSCSTSPSTA NGSHLLQPIL GRNKHGSMIN TEKVPQSTAP ISVPGSLEAV TATTRMIKES PKLNHNVKQS LVASKLANAG AGSQNFVNNP PPTDYMETAS SATSVWLSQN DGLLHQNFPM SNFNQPQMFK EATPDTEIHA ANTSNNALFG INGDGPLGFP MGTDDFLSNG IDASKYENHI STEIDNSYRV PKDAQQEISS SMVSQSFGAS DMAFNSIDSA INDGGLLNRS SWPPAPPLKR MRTFTKVYKR GAVGRSIDIS QFSGYDELKH ALARMFSIEG QLEERQRIGW KLVYKDHEDD ILLLGDDPWE EFVGCVRCIR ILSPQEVQQM SLDGCDLGNN FLPNQACSSS DGGNAWRARC DQNSGNPSNG SYEQFE // ID A0A0D9WW93_9ORYZ Unreviewed; 516 AA. AC A0A0D9WW93; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR07G04700.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR07G04700.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR07G04700.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR07G04700.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR07G04700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR07G04700.1; LPERR07G04700.1; LPERR07G04700. DR Gramene; LPERR07G04700.1; LPERR07G04700.1; LPERR07G04700. DR Proteomes; UP000032180; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 245 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 245 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 516 AA; 56829 MW; FAF8D95FC906EF8E CRC64; MVQPPDDAAP AVDGDVSHAH AHAHACTVPY SGRIPDIVSR ADDQRRWRML QVDWNQTSPP FSTIERRQVQ RRISDQTAFR PNQQVQAPML LQEDTQDPAD MHVQTTEQPP ANAATPVVID QEIWFGCTAP YSGRLPNTGF VVYYFPDGHA EQCQASAYML PESERIVCTV GDVVLNINAE THEPYAIFTL LPGVHPLQTR PLPAGPVPAA GERDCRTATP ASSSPTPAPS ASFPRLDDLD TGQNIVVTDL LGARWGFRHI RNAADDRHML TDGWSAFVNA RRLYDGDTEV FMRRPSGELL VGVRRKRFGG MPIGIQADRV AADAAKAASY GWELTAGHGG CSEVDASLRR APPLTPGTKV RLMMNPEDTW RGSEPVLGNV LALDPQRAWR MIESSDEAAT TSATGAATAT TYAPSLGLQL QTAASKSQQL PDGMKRKFYE IEMQYIVGKQ AGVEDYLDLI VIFNQMSALQ VETKELIENN APLREIEENT NTMRNLVRKM RSLRAAVKRS MAGKHR // ID A0A0D9WXL6_9ORYZ Unreviewed; 1314 AA. AC A0A0D9WXL6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR07G08550.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR07G08550.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR07G08550.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR07G08550.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR07G08550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR07G08550.1; LPERR07G08550.1; LPERR07G08550. DR Gramene; LPERR07G08550.1; LPERR07G08550.1; LPERR07G08550. DR Proteomes; UP000032180; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 190 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 86 190 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1314 AA; 147978 MW; 13C2A611ADDB44CA CRC64; MWRSWISLKS ARAGNTSGGY RAEGEQQERA GEVADDRERA SPHTSGSGRL KLAPDQLSDP DQQDSAVGIE PAQQAAAMAV EKEHLFDKVL TPSDVGKLNR LVIPKHHAEK FFPLDAAAVA ERGVVLSFED PAGKEWRFRY SYWNSSQSYV MTKGWSRFVR QNSLDAGDTV SFQRGASDAT RDRLFIHSIP SPTHRHRLMP GLRLPRMLTV LVPPSRHSLL KSSEMYPKHP PAVPDDPPSW PSSVTPRSPI NHLFHLLVRV RAVVSSFGQG GPPRPNHAML AKSNDFTYQA QYCLQDLHYY SLLALMGSKN QSRFPCGVEE KIRDTIPTLD AVIQSLSKQS SAPVRQSNVV AVEGTHFILL CRGVLGIMGI LCSDNINQEA DRFSAFDDHN YSVHDKITKR NEQTMPSSLS DPIYLLPTAI RNLLYLDLSN CSHLVQLPPS LGLLHNLSAL NLSSCHSLHA LPDSLGYMYN LQILLLSFCH KLHSLPASLG YLVYLRLLDL SGCCSLEILP DSSVNLCNLE NLNLSDCIRL KDVPQPFGNL RKLEYLNLSG CHRVDINVDC LRTLVNLKCL TLSDHTNITD LPYSFPELTR HLDLSRWWKN NWVHTQCNLK SYRCHQQSII NRILSVCSGE GDITSEQCLT SICIVGESGI GKTELLHEIY NDEKVLEGFH RRIWINMHDK KKLLEITEFT TCAYFYDAPS SILEATVREE LNGKRFLLVL DDVDIQNPCF WSDVWKLANV GAVGSTLIVT TRSKEVAKLF GAMQTYYLGS LSREECFMVF QKHAIGGDID NHPQLKEIGW KIVERGGGNP LCVKALSGLL CHSETSLSEI DSLVSGILPA LRLCYDLLPS RLKQCFKFCS LFPKDYVYVR HHAVQLWISQ GFIYPEEESQ PEDTGLKYFD ELFCRSFFRH CPFSNDNEDK FVVHELFHDL ACSVSKDECF SSKEPFCSLT ENICHLSLLR SDSNSVVLTK ELRHLQSLMV VRRSASEYSS LFEPPLKILG LNNLLMRCGF LRVLNLSCTT IVGLPSFVGN MKHLRFLALN NTKIKSLPAE IGQLDTLQTL ELKDCCCLTE LPESTNNLMK LRHLDVRKEP GNVHVGMPSG LGKLTDLQTL TVLNIGVSIT IEDCQDCNEI PYLGDLPSLK YLFIQKMCTV ESFGQRSNYL TTEVKHAPRF PSLEILNLWE MYSLQFWNET NKGDFPRLRH LCISRCPKLS NLPPLISLLY LSFYFGDQLP ALSELPSLKS MKIEGFQKLK SVRFCTEMPM LHKLEISDCK ELISIDAPFL SVSNLKVVRC PKLHFGGSSL EAVLCGKGFK GTPI // ID A0A0D9X0C3_9ORYZ Unreviewed; 720 AA. AC A0A0D9X0C3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR07G16110.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR07G16110.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR07G16110.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR07G16110.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR07G16110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR07G16110.1; LPERR07G16110.1; LPERR07G16110. DR Gramene; LPERR07G16110.1; LPERR07G16110.1; LPERR07G16110. DR Proteomes; UP000032180; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 222 323 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 477 527 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 222 323 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 720 AA; 80533 MW; C806DD74E62220A2 CRC64; MCARKSHNAM APNHIWSSSM HMAQNVADRK DNFVKTWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAYE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDK PTTPAGMNHI IRDRYANGHT QHSSLDPTYA YTLYHREGPN QSLHDHSHQH HGENDHLSAR KGKQFYSHSV IDNDFQAQLR NGRPRMDAKA RSQLLPRYWP RITDQELQHL SGDSNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPA ISQAEGLPLK VQDATGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRID PEGKLVMGFR KATNLSAEQD QPTKPANVVP PPPEANSKVS AADSGPSAAV PRPIKVNTEI KISSPVEQAT ASKIDKGALA QKEGPGTSSS SPGPVKRKAT SVGPKIKRFR MDNEESMELK ITWEEAQELL RPPPKAPSIV IVDGHEFEEY EEPPILGRRT YFVTDQSGEN HQWAQCEDCS KWRKLPVDAL LPSKWTCADN KWDPERSSCD SAQEINTEEL TEMIPIKPGA AKKSKGTDNI DVSDGLDTLA NLAILGEGES LPSQPTTRHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CMTVRRRFRT LMMRREKRQQ SEKDVGASRR KEVGQSSEPV PQAGSDAPPT NTTSSPPKTD TNSEGPDDMA VDNKRTSSPI KNQIDLNSQP EREDEHSPKS DATRLRDNPT // ID A0A0D9X0C4_9ORYZ Unreviewed; 785 AA. AC A0A0D9X0C4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR07G16110.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR07G16110.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR07G16110.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR07G16110.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR07G16110.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR07G16110.2; LPERR07G16110.2; LPERR07G16110. DR Gramene; LPERR07G16110.2; LPERR07G16110.2; LPERR07G16110. DR Proteomes; UP000032180; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 287 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 592 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 287 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 785 AA; 87362 MW; 2982D852E8216197 CRC64; MCARKSHNAM APNHIWSSSM HMAQNVADRK DNFVKTWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAYE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDK PTTPAGMNHI IRDRYANGHT QHSSLDPTYA YTLYHREGPN QSLHDHSHQH HGENDHLSAR KGVTPDPCSS VSTTFKLDSH HPSILKDDSS ALPAGLPSNF SSANGPKDHI RIGPTQQQQQ MASSSLQKQF YSHSVIDNDF QAQLRNGRPR MDAKARSQLL PRYWPRITDQ ELQHLSGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPAISQAE GLPLKVQDAT GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPEGKL VMGFRKATNL SAEQDQPTKP ANVVPPPPEA NSKVSAADSG PSAAVPRPIK VNTEIKISSP VEQATASKID KGALAQKEGP GTSSSSPGPV KRKATSVGPK IKRFRMDNEE SMELKITWEE AQELLRPPPK APSIVIVDGH EFEEYEEPPI LGRRTYFVTD QSGENHQWAQ CEDCSKWRKL PVDALLPSKW TCADNKWDPE RSSCDSAQEI NTEELTEMIP IKPGAAKKSK GTDNIDVSDG LDTLANLAIL GEGESLPSQP TTRHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCMTVR RRFRTLMMRR EKRQQSEKDV GASRRKEVGQ SSEPVPQAGS DAPPTNTTSS PPKTDTNSEG PDDMAVDNKR TSSPIKNQID LNSQPEREDE HSPKSDATRL RDNPT // ID A0A0D9X0C5_9ORYZ Unreviewed; 770 AA. AC A0A0D9X0C5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR07G16110.3}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR07G16110.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR07G16110.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR07G16110.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR07G16110.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR07G16110.3; LPERR07G16110.3; LPERR07G16110. DR Gramene; LPERR07G16110.3; LPERR07G16110.3; LPERR07G16110. DR Proteomes; UP000032180; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 287 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 592 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 287 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 770 AA; 85889 MW; E240C2DF5E69EFA3 CRC64; MCARKSHNAM APNHIWSSSM HMAQNVADRK DNFVKTWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAYE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDK PTTPAGMNHI IRDRYANGHT QHSSLDPTYA YTLYHREGPN QSLHDHSHQH HGENDHLSAR KGVTPDPCSS VSTTFKLDSH HPSILKDDSS ALPAGLPSNF SSANGPKDHI RIGPTQQQQQ MASSSLQKQF YSHSVIDNDF QAQLRNGRPR MDAKARSQLL PRYWPRITDQ ELQHLSGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPAISQAE GLPLKVQDAT GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRIDPEGKL VMGFRKATNL SAEQDQPTKP ANVVPPPPEA NSKVSAADSG PSAAVPRPIK VNTEIKISSP VEQATASKID KGALAQKEGP GTSSSSPGPV KRKATSVGPK IKRFRMDNEE SMELKITWEE AQELLRPPPK APSIVIVDGH EFEEYEEPPI LGRRTYFVTD QSGENHQWAQ CEDCSKWRKL PVDALLPSKW TCADNKWDPE RSSCDSAQEI NTEELTEMIP IKPDGLDTLA NLAILGEGES LPSQPTTRHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CMTVRRRFRT LMMRREKRQQ SEKDVGASRR KEVGQSSEPV PQAGSDAPPT NTTSSPPKTD TNSEGPDDMA VDNKRTSSPI KNQIDLNSQP EREDEHSPKS DATRLRDNPT // ID A0A0D9X2Y6_9ORYZ Unreviewed; 942 AA. AC A0A0D9X2Y6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR07G23240.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR07G23240.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR07G23240.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR07G23240.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR07G23240.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR07G23240.1; LPERR07G23240.1; LPERR07G23240. DR Gramene; LPERR07G23240.1; LPERR07G23240.1; LPERR07G23240. DR Proteomes; UP000032180; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 356 457 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 616 666 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 356 457 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 942 AA; 103907 MW; 966816D8B5A4D853 CRC64; MAALVAKRCM NAACGAPAGG QEWRKGWPLR SGGFAVLCDK CGLAYEQLVF CDIFHQKESG WRDCSFCGKR LHCGCIASKN SFDLLDSGGV QCVTCIKNSA VQSVLSPVVP KLFPSPNNQR LFGKSDELLS GRPLETTSVM VDARNDDLTI ISKNSHPFMV KNIEAGQSSN ILRQKELENG ARQIKWELPT LSIGDMGRMP FLTRSQSALE PPQYTRRDEN KDPTTESTTS ESLSEACLNM SLGIASNGNK LEATSTVERP MLSPTTGFAE GRELTTALSP FQHAQRARHF LTRPPRVGEG AVFDPTKDML PHLRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG RPLTIQDAKG KEWHFQFRFW PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIEPGGKLV MGFRKATNTV SLPDSQISAI ANGSILGDTL FSNTNENLAI VSGYSGFLQS IKGAADLHTS SLYDHHVNSA DGDASWLKTD KFGSRPDDGP LQFLKRGRNI GSKSRRLSMD TEEAWELKLY WDEVQELLRP APTAKPTVVM IEDYEIEEYD EPPVFAKRSI FTIRSTGEHD QWIQCDDCSK WRRLPLNVIV ASKWTCADNT IDSKSCSCSA PEELTPKELH IVLQQYEDMR RRRNSFGFKQ NIPEMDAASF DALTTAAVFG EVGNQGSPSV ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PACTCNVCMT VRRRFKTLMM RKKQRQSERE EAETSKKVAW MNRDEPEGSS LSRSPQTLDT TRDGDVTMFD KVDINKGHID LNFHPTAIRD EDQHNAGQPR ASMVSLLEVA NRPLENYMKQ NGLTSLAGEQ GSSSTCTNAA ATVPQPTPVE SEERTSNNEG RVPSAEQPES MAVDEAGDNQ PDKAAASDAA AA // ID A0A0D9X2Y7_9ORYZ Unreviewed; 908 AA. AC A0A0D9X2Y7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR07G23240.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR07G23240.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR07G23240.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR07G23240.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR07G23240.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR07G23240.2; LPERR07G23240.2; LPERR07G23240. DR Gramene; LPERR07G23240.2; LPERR07G23240.2; LPERR07G23240. DR Proteomes; UP000032180; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 423 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 582 632 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 322 423 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100370 MW; 7A9C1DC4B5FD4EC2 CRC64; MAALVAKRCM NAACGAPAGG QEWRKGWPLR SGGFAVLCDK CGLAYEQLVF CDIFHQKESG WRDCSFCGKV LSPVVPKLFP SPNNQRLFGK SDELLSGRPL ETTSVMVDAR NDDLTIISKN SHPFMVKNIE AGQSSNILRQ KELENGARQI KWELPTLSIG DMGRMPFLTR SQSALEPPQY TRRDENKDPT TESTTSESLS EACLNMSLGI ASNGNKLEAT STVERPMLSP TTGFAEGREL TTALSPFQHA QRARHFLTRP PRVGEGAVFD PTKDMLPHLR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGRPLT IQDAKGKEWH FQFRFWPNNN SRMYVLEGVT PCIQSLQLQA GDTVTFSRIE PGGKLVMGFR KATNTVSLPD SQISAIANGS ILGDTLFSNT NENLAIVSGY SGFLQSIKGA ADLHTSSLYD HHVNSADGDA SWLKTDKFGS RPDDGPLQFL KRGRNIGSKS RRLSMDTEEA WELKLYWDEV QELLRPAPTA KPTVVMIEDY EIEEYDEPPV FAKRSIFTIR STGEHDQWIQ CDDCSKWRRL PLNVIVASKW TCADNTIDSK SCSCSAPEEL TPKELHIVLQ QYEDMRRRRN SFGFKQNIPE MDAASFDALT TAAVFGEVGN QGSPSVATTT KHPRHRPGCT CIVCIQPPSG KGPKHNPACT CNVCMTVRRR FKTLMMRKKQ RQSEREEAET SKKVAWMNRD EPEGSSLSRS PQTLDTTRDG DVTMFDKVDI NKGHIDLNFH PTAIRDEDQH NAGQPRASMV SLLEVANRPL ENYMKQNGLT SLAGEQGSSS TCTNAAATVP QPTPVESEER TSNNEGRVPS AEQPESMAVD EAGDNQPDKA AASDAAAA // ID A0A0D9X3C8_9ORYZ Unreviewed; 351 AA. AC A0A0D9X3C8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR08G00120.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR08G00120.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR08G00120.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR08G00120.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR08G00120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR08G00120.1; LPERR08G00120.1; LPERR08G00120. DR Gramene; LPERR08G00120.1; LPERR08G00120.1; LPERR08G00120. DR Proteomes; UP000032180; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 242 342 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 351 AA; 38700 MW; 5C186F0BAB1742B9 CRC64; MGQMDGGDGG GGQPYHHYQA LLAAVQQQNV PFPLPFPSSP TGSEAGPHNY HHHQSHSHSH SHNAALAPSP SPTPSRGFAD WSASTSAFTS LASHSSPAPS NALHYSFSPC YAFWTHYMLN KNAYPPSFPP PPHDDQLRLA NNHPIRDAPG PASTYGVDSF TSPSMAPNIC THMPPIEGPI SVKEEKKPEV FPRVVKSTDE LETRNSAVEF HCETVGTLPE SKQGHESRAT KLLNSGEYQV ILRKELTKSD VGNVGRIVLP KKDAEASLPP LLQRDPLILH MEDMVLPVTW KFKYRYWPNN KSRMYILDSA GEFLKTHGLQ AGDVIIIYKN LAPDKFIIRG EKAIHQQTTN P // ID A0A0D9X4L7_9ORYZ Unreviewed; 262 AA. AC A0A0D9X4L7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR08G03490.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR08G03490.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR08G03490.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR08G03490.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR08G03490.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR08G03490.1; LPERR08G03490.1; LPERR08G03490. DR Gramene; LPERR08G03490.1; LPERR08G03490.1; LPERR08G03490. DR Proteomes; UP000032180; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 262 AA; 28477 MW; F6F771677DD31F54 CRC64; MDLTLGRQVL QVVEEEEDQE EEEDQSPAPP PRRQGVVTGA GGEEIREHMF EKVVTPSDVG KLNRLVVPKQ HAERFFPAMA AAAATATQLC FEDRAGTAWR FRYSYWGSSQ SYVITKGWSR FVRAARLSAG DTVSFSRSGN GDGAAAGGQY RYFIDYRHCH RRGSAAIDFS SAAAMSPAAA TMAWPYFGRP VLQTTAAPVI YGGGHTVAPP PAVEVGPTGQ RSFRLFGVNF ECGGEAAAAA EVEDDGDRRG EEMELVMWTT NN // ID A0A0D9X9V4_9ORYZ Unreviewed; 1213 AA. AC A0A0D9X9V4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR08G17530.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR08G17530.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR08G17530.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR08G17530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR08G17530.1; LPERR08G17530.1; LPERR08G17530. DR Gramene; LPERR08G17530.1; LPERR08G17530.1; LPERR08G17530. DR Proteomes; UP000032180; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 853 936 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1213 AA; 131514 MW; 20A3DA50C6E19F69 CRC64; MAATASSGGG GEEGEGRGTT AKVNQELWYA CAGPLVSLPP QGSLVVYFPQ GHSEQVAASM RRDADAQIPS YPNLPSKLIC ILHSVTMHAD PDTDEVYARM TLQPVSNVTQ CDKEILLASE LALKQTKPQT EFFCKTLTAS DTSTHGGFSV PRRAAERIFP RLDFSLQPPC QELQARDLHD NIWTFRHIYR GQPKRHLLTT GWSLFVSGKR LLAGDSVLFI RDAKQQLLLG IRRANRQPTN LSSSVLSSDS MHIGILAAAA HAAANNSQFT IYYNPRASPS EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET EETGTRRYMG TITGISDLDP VRWKTSHWRN LQVAWDEAAP SERRTRVSLW EIEPIIAPFF IYPSPMFTAK RPRLPGMAVP GLNLAQWMSM QHNSSLPGTV VQPELLNSLS GKPIQNLAAA DLSRQISFHP QFLQQNSIQF NASLVPQQNQ QTEQLAKVIA TQNQLGSSII PQKVVQDCNS EQRQNVVTQQ VQGSQSNISI TQPQLVVQAQ LQQPQPQQPL ISEQQKMLLD LQQQMMNSQS APQQCVQVNQ AISLHNSNTV QYPTQQKVQS HQQVQDFTGN AIPNAKPDVV TSIGPSSLHT AGGLQLLKTD DVPSSSTSPS TNSSPVLLQS IPSSSKNQSL ATAGKTSQSS VVLGPTIEQD TKPYQSVKQT MIIPKVTEQR PATRQDCINN NTQMDYLDTS SSATSVCLSQ ADGSLQQNFP PPSFNQHHLL KDAIPVSDFE VTDPRNNLLF GVSIDGQLGL PLSADLLAND IETDKYMDQL PGNGISNYIS SKDSQQELSS SMISHSFGVA DMAFNSIDSA VNDTTFLNRN SRSAAGPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK RDVARMFGIE GQLGDQNRVG WKLVYEDHEK DVLLVGDDPW EILSPQEEMQ MRLVGDFGDS FLPNQACSSS DGGHPWRITG DIVDNGRMVA SKTAETRSSS SSAAASRSRS ARTTASSPSF PSNPSAPHLS LYVSWVALST TANARRATSS GVIIIHVLTG VDSMASRMAA VSAAASGSTT TRSTPLAARH LRWLSARRRA REATSAASRR RASHHAACRD SAASSGDPVP ANTARALLRS ATQGAMASAI VPAALSAPDA HCICSGVGSG LERYLVPTEE CVVRSCSVSS SSASSSGPQF ITASISSCIS SSMSTTAGGG VLLLQHMIVS ICK // ID A0A0D9X9V5_9ORYZ Unreviewed; 956 AA. AC A0A0D9X9V5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR08G17530.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR08G17530.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR08G17530.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR08G17530.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR08G17530.2; LPERR08G17530.2; LPERR08G17530. DR Gramene; LPERR08G17530.2; LPERR08G17530.2; LPERR08G17530. DR Proteomes; UP000032180; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 846 929 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 956 AA; 104979 MW; 9E485FC0A3177C64 CRC64; MAATASSGGG GEEGEGRGTT AKVNQELWYA CAGPLVSLPP QGSLVVYFPQ GHSEQVAASM RRDADAQIPS YPNLPSKLIC ILHSVTMHAD PDTDEVYARM TLQPVSNVTQ CDKEILLASE LALKQTKPQT EFFCKTLTAS DTSTHGGFSV PRRAAERIFP RLDFSLQPPC QELQARDLHD NIWTFRHIYR GQPKRHLLTT GWSLFVSGKR LLAGDSVLFI RDAKQQLLLG IRRANRQPTN LSSSVLSSDS MHIGILAAAA HAAANNSQFT IYYNPRASPS EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET EETGTRRYMG TITGISDLDP VENLSLAQSS AAPSERRTRV SLWEIEPIIA PFFIYPSPMF TAKRPRLPGM AVPGLNLAQW MSMQHNSSLP GTVVQPELLN SLSGKPIQNL AAADLSRQIS FHPQFLQQNS IQFNASLVPQ QNQQTEQLAK VIATQNQLGS SIIPQKVVQD CNSEQRQNVV TQQVQGSQSN ISITQPQLVV QAQLQQPQPQ QPLISEQQKM LLDLQQQMMN SQSAPQQCVQ VNQAISLHNS NTVQYPTQQK VQSHQQVQDF TGNAIPNAKP DVVTSIGPSS LHTAGGLQLL KTDDVPSSST SPSTNSSPVL LQSIPSSSKN QSLATAGKTS QSSVVLGPTI EQDTKPYQSV KQTMIIPKVT EQRPATRQDC INNNTQMDYL DTSSSATSVC LSQADGSLQQ NFPPPSFNQH HLLKDAIPVS DFEVTDPRNN LLFGVSIDGQ LGLPLSADLL ANDIETDKYM DQLPGNGISN YISSKDSQQE LSSSMISHSF GVADMAFNSI DSAVNDTTFL NRNSRSAAGP AHQRMRTYTK VHKRGAVGRS IDINRYSGYD ELKRDVARMF GIEGQLGDQN RVGWKLVYED HEKDVLLVGD DPWEILSPQE EMQMRLVGDF GDSFLPNQAC SSSDGGHPWR ITAFGS // ID A0A0D9X9V6_9ORYZ Unreviewed; 963 AA. AC A0A0D9X9V6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR08G17530.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR08G17530.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR08G17530.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR08G17530.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR08G17530.3; LPERR08G17530.3; LPERR08G17530. DR Gramene; LPERR08G17530.3; LPERR08G17530.3; LPERR08G17530. DR Proteomes; UP000032180; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 853 936 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 963 AA; 106143 MW; 533939221635B363 CRC64; MAATASSGGG GEEGEGRGTT AKVNQELWYA CAGPLVSLPP QGSLVVYFPQ GHSEQVAASM RRDADAQIPS YPNLPSKLIC ILHSVTMHAD PDTDEVYARM TLQPVSNVTQ CDKEILLASE LALKQTKPQT EFFCKTLTAS DTSTHGGFSV PRRAAERIFP RLDFSLQPPC QELQARDLHD NIWTFRHIYR GQPKRHLLTT GWSLFVSGKR LLAGDSVLFI RDAKQQLLLG IRRANRQPTN LSSSVLSSDS MHIGILAAAA HAAANNSQFT IYYNPRASPS EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET EETGTRRYMG TITGISDLDP VRWKTSHWRN LQVAWDEAAP SERRTRVSLW EIEPIIAPFF IYPSPMFTAK RPRLPGMAVP GLNLAQWMSM QHNSSLPGTV VQPELLNSLS GKPIQNLAAA DLSRQISFHP QFLQQNSIQF NASLVPQQNQ QTEQLAKVIA TQNQLGSSII PQKVVQDCNS EQRQNVVTQQ VQGSQSNISI TQPQLVVQAQ LQQPQPQQPL ISEQQKMLLD LQQQMMNSQS APQQCVQVNQ AISLHNSNTV QYPTQQKVQS HQQVQDFTGN AIPNAKPDVV TSIGPSSLHT AGGLQLLKTD DVPSSSTSPS TNSSPVLLQS IPSSSKNQSL ATAGKTSQSS VVLGPTIEQD TKPYQSVKQT MIIPKVTEQR PATRQDCINN NTQMDYLDTS SSATSVCLSQ ADGSLQQNFP PPSFNQHHLL KDAIPVSDFE VTDPRNNLLF GVSIDGQLGL PLSADLLAND IETDKYMDQL PGNGISNYIS SKDSQQELSS SMISHSFGVA DMAFNSIDSA VNDTTFLNRN SRSAAGPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK RDVARMFGIE GQLGDQNRVG WKLVYEDHEK DVLLVGDDPW EILSPQEEMQ MRLVGDFGDS FLPNQACSSS DGGHPWRITA FGS // ID A0A0D9X9V7_9ORYZ Unreviewed; 867 AA. AC A0A0D9X9V7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR08G17530.4, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR08G17530.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR08G17530.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR08G17530.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR08G17530.4; LPERR08G17530.4; LPERR08G17530. DR Gramene; LPERR08G17530.4; LPERR08G17530.4; LPERR08G17530. DR Proteomes; UP000032180; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 757 840 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 867 AA; 95775 MW; 6C5C267AC853B02A CRC64; MAATASSGGG GEEGEGRGTT AKVNQELWYA CAGPLVSLPP QGSLVVYFPQ GHSEQVAASM RRDADAQIPS YPNLPSKLIC ILHSVTMHAD PDTDEVYARM TLQPVSNVTQ CDKEILLASE LALKQTKPQT EFFCKTLTAS DTSTHGGFSV PRRAAERIFP RLDFSLQPPC QELQARDLHD NIWTFRHIYR GQPKRHLLTT GWSLFVSGKR LLAGDSVLFI RDAKQQLLLG IRRANRQPTN LSSSVLSSDS MHIGILAAAA HAAANNSQFT IYYNPRASPS EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET EETGTRRYMG TITGISDLDP VRWKTSHWRN LQVAWDEAAP SERRTRVSLW EIEPIIAPFF IYPSPMFTAK RPRLPGMAVP GLNLAQWMSM QHNSSLPGTV VQPELLNSLS GKPIQNLAAA DLSRQISFHP QFLQQNSIQF NASLVPQQNQ QTEQLAKVIA TQNQLGSSII PQKVVQDCNS EQRQNVVTQQ VQGSQSNISI TQPQLVVQAQ LQQPQPQQPL ISEQQKMLLD LQQQMMNSQS APQQCVQVNQ AISLHNSNTV QYPTQQKVQS HQQVQDFTGN AIPNAKPDVV TSIGPSSLHT AGGLQLLKTD DVPSSSTSPS TNSSPVLLQS IPSSSKNQSL ATAGKTSQSS VVLGPTIEQD TKPYQSVKQT MIIPKVTEQR PATRQDCINN NTQMDYLDTS SSATSVCLSQ ADGSLQQNFP PPSFNQHHLL KDAIPVSDFE VTDPRNNLLF GVHKRGAVGR SIDINRYSGY DELKRDVARM FGIEGQLGDQ NRVGWKLVYE DHEKDVLLVG DDPWEILSPQ EEMQMRLVGD FGDSFLPNQA CSSSDGGHPW RITAFGS // ID A0A0D9XKQ1_9ORYZ Unreviewed; 707 AA. AC A0A0D9XKQ1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR10G09970.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR10G09970.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR10G09970.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR10G09970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR10G09970.1; LPERR10G09970.1; LPERR10G09970. DR Gramene; LPERR10G09970.1; LPERR10G09970.1; LPERR10G09970. DR Proteomes; UP000032180; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 690 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 707 AA; 77067 MW; 4C311BB937DBA24B CRC64; MEEERCLDPQ LWHACAGGMV QMPAARSRVY YFAQGHAEHA NGGGAAAELA AAAPRALRRN EWYKKGNYGE ALRHXRALPP LVLCRVDGVR FLADPDTDEV FAKIRLSPVS PAEVDFRDSP EQLCPLAGGD GESPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV LAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRTR VGELCVGIRR AKRVACGGME CMSGWNAPGY GGFSAFLKEE ESKLMKGAGG GYMRGRGKVK IADVVEAASL AANGQPFEVA YYPRASTPEF VVKATSVQAA MRIQWCSGMR FKMAFETEDS SRISWFMGTI SSVQVADPNR WPNSPWRLLQ VTWDEPDLLQ NVKCVSPWLV ELVSSIPPIH LGPFSPPRKK LRVPPHPDFP FEGHLLNPIF HGNPLGPSNS PLCCYPDTAP AGIQGARHAQ FGLPLTDHQL NKLHLGLFHG GSFNRLDAIT PPSRISKGFV VSTAPAHDNV PCLLSIGTPQ STEKSDDRKT TPHIMLFGKA IFADQQITSS RSLETLSPGV TANSSPNGNV QKAGNASDGS GSSICIGFSP HGRGASDLGL EAGHCKVFME SEDVGRTIDL SVFGSYEELY GRLADMFGIE KEEIINHLHY RDAAGVVKHT GEVPFGDFMK VARRLTIIAG DGGRIERPLI QCLVEQA // ID A0A0D9XKQ2_9ORYZ Unreviewed; 409 AA. AC A0A0D9XKQ2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR10G09970.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR10G09970.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR10G09970.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR10G09970.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR10G09970.2; LPERR10G09970.2; LPERR10G09970. DR Gramene; LPERR10G09970.2; LPERR10G09970.2; LPERR10G09970. DR Proteomes; UP000032180; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 45177 MW; 1D91CAF1614EED07 CRC64; MEEERCLDPQ LWHACAGGMV QMPAARSRVY YFAQGHAEHA NGGGAAAELA AAAPRALRRN EWYKKGNYGE ALRHXRALPP LVLCRVDGVR FLADPDTDEV FAKIRLSPVS PAEVDFRDSP EQLCPLAGGD GESPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV LAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRTR VGELCVGIRR AKRVACGGME CMSGWNAPGY GGFSAFLKEE ESKLMKGAGG GYMRGRGKVK IADVVEAASL AANGQPFEVA YYPRASTPEF VVKATSVQAA MRIQWCSGMR FKMAFETEDS SRISWFMGTI SSVQVADPNR WPNSPWRLLQ HPNRSHATTY LRSDVTPLHP AFTSVHMKH // ID A0A0D9XLX1_9ORYZ Unreviewed; 296 AA. AC A0A0D9XLX1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR10G12990.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR10G12990.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR10G12990.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR10G12990.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR10G12990.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR10G12990.1; LPERR10G12990.1; LPERR10G12990. DR Gramene; LPERR10G12990.1; LPERR10G12990.1; LPERR10G12990. DR Proteomes; UP000032180; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 296 AA; 31957 MW; D0E530FA4703B680 CRC64; MDFTPISPAP PLNGGGGRGE EDSDRSAAAW AVVEKEHMFE KVVTPSDVGK LNRLVIPKQH AERYFPLDAA AAAANGGVAA GKGLVLSFED RTGKSWRFRY SYWNSSQSYV MTKGWSRFVK EKRLGAGDTV SFGRGLGDAA ARCRLFIDFR RRRRHDAFVF PPPPTTMAPS SHHHHHHNLQ RQLAPLPSVP LCPWRDYYGG GGTASSGRHV LFLRPQVVTS PAAVLKSVPV HAAVETTAAA RPKRVRLFGV NLDCPAAAMD DGEAEAASLL QQLPSPSSST SSSTAGKKMC SLDLGL // ID A0A0D9XP80_9ORYZ Unreviewed; 280 AA. AC A0A0D9XP80; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR11G03050.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR11G03050.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR11G03050.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR11G03050.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR11G03050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR11G03050.1; LPERR11G03050.1; LPERR11G03050. DR Gramene; LPERR11G03050.1; LPERR11G03050.1; LPERR11G03050. DR Proteomes; UP000032180; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 31434 MW; 63AA4A3926913BCD CRC64; MAMNSLFSQE HPQAWPWGVA MYANFHYHHQ YEKEHMFEKP LTPSDVGKLN RLVIPKQHAE RYFPLGGDKG LILSFEDEAG APWRFRYSYW TSSQSYVLTK GWSRYVKEKR LDAGDVVHFE RAHGSFGAGD RLFIGCRRRG DSAAQTRAPP PAAARAQNAG EQQPCSPMCY STSGSYPTSP ANSCYAYRRV ADQHDHSDMH HAEEPPRDTD SRSPSFSGGS APSRRLRLFG VNLDCGPEPE ADTTAAATMY GYMHQQSSYT AMSAVPSYWF VLTSNTTKNV // ID A0A0D9XQ22_9ORYZ Unreviewed; 440 AA. AC A0A0D9XQ22; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR11G05260.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR11G05260.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR11G05260.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR11G05260.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR11G05260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR11G05260.1; LPERR11G05260.1; LPERR11G05260. DR Gramene; LPERR11G05260.1; LPERR11G05260.1; LPERR11G05260. DR Proteomes; UP000032180; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 325 420 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 325 420 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 440 AA; 50133 MW; 03136D777B87DF54 CRC64; MAAFLCLCVA SRGSQHDRSR LREGERRSVK RSKNQEGERR GVKRSRRSRS EKEEQRNDAL GMSFFRVILT EQSMEILRIP PPFNRYLQNQ PTGMVSLVDR NDNTWIVELI YKSGEFFFVH GWKEFIRDNS IETGQFVVFN YAKQSEFSVT VFKLSGIENT LPNSARVSKK VIIKIESDDV DTDNAATNEE RMAPPLKESN INTGKRIIDA DSLMEDRAPL KKSSDANVAG SSKRKRGASV GKSKASPTSH NSTKGSSCDM SDEDSKLPKA QPILMQFQNG DIARRGLSKG QRQLAVISQR RPVTEGEKDH ALQRAKDFKS KNPFAVQIMM ESYVYVGFFM NIPCDFVREY LPRTSKMLTL WDPQGKSWKV NYVYYSDRSV GSFSGGWGKF AIGNNLEKFD VCVFELIQKD NIKVHIYRVV PEITPHKLRS DRIPLLLAMI // ID A0A0D9XQ23_9ORYZ Unreviewed; 438 AA. AC A0A0D9XQ23; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR11G05260.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR11G05260.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR11G05260.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR11G05260.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR11G05260.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR11G05260.2; LPERR11G05260.2; LPERR11G05260. DR Gramene; LPERR11G05260.2; LPERR11G05260.2; LPERR11G05260. DR Proteomes; UP000032180; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 323 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 323 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 438 AA; 50115 MW; 330CA62DF3AEB1F4 CRC64; MGRSRKQEGE RRSVKRSRKQ EGERRSVKRS KNQEGERRGV KRSRRSRSEK EEQRNDALGM SFFRVILTEQ SMEILRIPPP FNRYLQNQPT GMVSLVDRND NTWIVELIYK SGEFFFVHGW KEFIRDNSIE TGQFVVFNYA KQSEFSVTVF KLSGIENTLP NSARVSKKVI IKIESDDVDT DNAATNEERM APPLKESNIN TGKRIIDADS LMEDRAPLKK SSDANVAGSS KRKRGASVGK SKASPTSHNS TKGSSCDMSD EDSKLPKAQP ILMQFQNGDI ARRGLSKGQR QLAVISQRRP VTEGEKDHAL QRAKDFKSKN PFAVQIMMES YVYVGFFMNI PCDFVREYLP RTSKMLTLWD PQGKSWKVNY VYYSDRSVGS FSGGWGKFAI GNNLEKFDVC VFELIQKDNI KVHIYRVVPE ITPHKLRSDR IPLLLAMI // ID A0A0D9XSH8_9ORYZ Unreviewed; 869 AA. AC A0A0D9XSH8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR11G11950.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR11G11950.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR11G11950.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR11G11950.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR11G11950.1; LPERR11G11950.1; LPERR11G11950. DR Gramene; LPERR11G11950.1; LPERR11G11950.1; LPERR11G11950. DR Proteomes; UP000032180; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 726 810 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 869 AA; 95855 MW; 246C63865C35AE68 CRC64; MVTAEVEAAA AAAAGVGGGE GDAAMARGGG GGGGGGEDAL FTELWSACAG PLVTVPRVGE KVFYFPQGHI EQVEASTNQV SEQRMQLYNL PWKIPCEVMN VELKAEPDTD EVYAQLTLLP ESKQQEENGC TEEEAPTAPA THVRPRVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHGVEW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE NGELRVGVRR AMRQQTNVPS SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPAEFV VPYDRYMESL KRNYSIGMRF KMRFEGEEAP EQRFTGTIVG MGDSDPAGWP ESKWRSLKVR WDEASSIPRP ERVSPWQIEP AVNPPPINPL PVPRTKRLRP NVTASPPDPS AVAKEAAPKV TVESEPNGMQ RAFQTQENAA PKGSFGNSSE LDTAQKSVMR SSGFDREKNN ISTQRKLGSD GWMQMNRPEN YSEMLSGFQP PKDVQTPQGF CSLPDQITPG HSNFWHTVNA QYQDQQGNHN MFPSSWSFMP PNTGLGLNKQ NYSMIQEVGG LSQRAMNTKF GNGVYAAQPG RGIEQYSGAW FGHMIPSSHM DDTQPRLIKP KPLVVAHGDV QKAKGASCKL FGIHLDSPVK SELLKSPSSV VYDGTPQTPG VEWRRQDVNE VEKCSDPSKT LKSLDAPQAD SVPEKPLSCQ QASRNMPCKS QGGSTRSCKK VHKQGIALGR SVDLTKFDGY EGLIAELDDM FDFTGELKGP NKEWMVVYTD NEGDMMLVGD DPWIEFCDMV HKIFIYTREE VQRMNPGTLN SRSEDSHANS VERGSVAREM RGCVSTSGIG ISLGIGKVKM RSSNFIFLQ // ID A0A0D9XSH9_9ORYZ Unreviewed; 770 AA. AC A0A0D9XSH9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR11G11950.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR11G11950.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR11G11950.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR11G11950.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR11G11950.2; LPERR11G11950.2; LPERR11G11950. DR Gramene; LPERR11G11950.2; LPERR11G11950.2; LPERR11G11950. DR Proteomes; UP000032180; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 642 726 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 66 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 770 AA; 86008 MW; 489DDE3321BE5C04 CRC64; MQLYNLPWKI PCEVMNVELK AEPDTDEVYA QLTLLPESKQ QEENGCTEEE APTAPATHVR PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD LHGVEWRFRH IFRGQPRRHL LQSGWSVFVS AKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QTNVPSSVIS SHSMHLGVLA TAWHAVNTGT MFTVYYKPRT SPAEFVVPYD RYMESLKRNY SIGMRFKMRF EGEEAPEQRF TGTIVGMGDS DPAGWPESKW RSLKVRWDEA SSIPRPERVS PWQIEPAVNP PPINPLPVPR TKRLRPNVTA SPPDPSAVAK EAAPKVTVES EPNGMQRAFQ TQENAAPKGS FGNSSELDTA QKSVMRSSGF DREKNNISTQ RKLGSDGWMQ MNRPENYSEM LSGFQPPKDV QTPQGFCSLP DQITPGHSNF WHTVNAQYQD QQGNHNMFPS SWSFMPPNTG LGLNKQNYSM IQEVGGLSQR AMNTKFGNGV YAAQPGRGIE QYSGAWFGHM IPSSHMDDTQ PRLIKPKPLV VAHGDVQKAK GASCKLFGIH LDSPVKSELL KSPSSVVYDG TPQTPGVEWR RQDVNEVEKC SDPSKTLKSL DAPQADSVPE KPLSCQQASR NMPCKSQGGS TRSCKKVHKQ GIALGRSVDL TKFDGYEGLI AELDDMFDFT GELKGPNKEW MVVYTDNEGD MMLVGDDPWI EFCDMVHKIF IYTREEVQRM NPGTLNSRSE DSHANSVERG SVAREMRGCV STSSLNSENC // ID A0A0D9XSI0_9ORYZ Unreviewed; 854 AA. AC A0A0D9XSI0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR11G11950.3, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR11G11950.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR11G11950.3, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR11G11950.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR11G11950.3; LPERR11G11950.3; LPERR11G11950. DR Gramene; LPERR11G11950.3; LPERR11G11950.3; LPERR11G11950. DR Proteomes; UP000032180; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 726 810 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 94255 MW; 80875CB43D308CD9 CRC64; MVTAEVEAAA AAAAGVGGGE GDAAMARGGG GGGGGGEDAL FTELWSACAG PLVTVPRVGE KVFYFPQGHI EQVEASTNQV SEQRMQLYNL PWKIPCEVMN VELKAEPDTD EVYAQLTLLP ESKQQEENGC TEEEAPTAPA THVRPRVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHGVEW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE NGELRVGVRR AMRQQTNVPS SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPAEFV VPYDRYMESL KRNYSIGMRF KMRFEGEEAP EQRFTGTIVG MGDSDPAGWP ESKWRSLKVR WDEASSIPRP ERVSPWQIEP AVNPPPINPL PVPRTKRLRP NVTASPPDPS AVAKEAAPKV TVESEPNGMQ RAFQTQENAA PKGSFGNSSE LDTAQKSVMR SSGFDREKNN ISTQRKLGSD GWMQMNRPEN YSEMLSGFQP PKDVQTPQGF CSLPDQITPG HSNFWHTVNA QYQDQQGNHN MFPSSWSFMP PNTGLGLNKQ NYSMIQEVGG LSQRAMNTKF GNGVYAAQPG RGIEQYSGAW FGHMIPSSHM DDTQPRLIKP KPLVVAHGDV QKAKGASCKL FGIHLDSPVK SELLKSPSSV VYDGTPQTPG VEWRRQDVNE VEKCSDPSKT LKSLDAPQAD SVPEKPLSCQ QASRNMPCKS QGGSTRSCKK VHKQGIALGR SVDLTKFDGY EGLIAELDDM FDFTGELKGP NKEWMVVYTD NEGDMMLVGD DPWIEFCDMV HKIFIYTREE VQRMNPGTLN SRSEDSHANS VERGSVAREM RGCVSTSSLN SENC // ID A0A0D9XSI1_9ORYZ Unreviewed; 797 AA. AC A0A0D9XSI1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR11G11950.4, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR11G11950.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR11G11950.4, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR11G11950.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR11G11950.4; LPERR11G11950.4; LPERR11G11950. DR Gramene; LPERR11G11950.4; LPERR11G11950.4; LPERR11G11950. DR Proteomes; UP000032180; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 669 753 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 93 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 797 AA; 88652 MW; F144B720B3567A0F CRC64; MVTAEVEAAA AAAAGVEAST NQVSEQRMQL YNLPWKIPCE VMNVELKAEP DTDEVYAQLT LLPESKQQEE NGCTEEEAPT APATHVRPRV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGENGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPA EFVVPYDRYM ESLKRNYSIG MRFKMRFEGE EAPEQRFTGT IVGMGDSDPA GWPESKWRSL KVRWDEASSI PRPERVSPWQ IEPAVNPPPI NPLPVPRTKR LRPNVTASPP DPSAVAKEAA PKVTVESEPN GMQRAFQTQE NAAPKGSFGN SSELDTAQKS VMRSSGFDRE KNNISTQRKL GSDGWMQMNR PENYSEMLSG FQPPKDVQTP QGFCSLPDQI TPGHSNFWHT VNAQYQDQQG NHNMFPSSWS FMPPNTGLGL NKQNYSMIQE VGGLSQRAMN TKFGNGVYAA QPGRGIEQYS GAWFGHMIPS SHMDDTQPRL IKPKPLVVAH GDVQKAKGAS CKLFGIHLDS PVKSELLKSP SSVVYDGTPQ TPGVEWRRQD VNEVEKCSDP SKTLKSLDAP QADSVPEKPL SCQQASRNMP CKSQGGSTRS CKKVHKQGIA LGRSVDLTKF DGYEGLIAEL DDMFDFTGEL KGPNKEWMVV YTDNEGDMML VGDDPWIEFC DMVHKIFIYT REEVQRMNPG TLNSRSEDSH ANSVERGSVA REMRGCVSTS SLNSENC // ID A0A0D9XX25_9ORYZ Unreviewed; 287 AA. AC A0A0D9XX25; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR12G03290.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G03290.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G03290.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G03290.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G03290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G03290.1; LPERR12G03290.1; LPERR12G03290. DR Gramene; LPERR12G03290.1; LPERR12G03290.1; LPERR12G03290. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 32352 MW; 68C86D4C10776749 CRC64; MAMHPLAHGH PQAWPWGVAM YTNLHHYHHH HYEREHLFEK PLTPSDVGKL NRLVIPKQHA ERYFPLSGDS GEKGLLLSFE DESGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKHLDAGDV VHFERVRSLG AGDRLFIGCR RRGETAPAAA PPPPAVRVPP PTTLNGGEQQ PWSPMCYSTS GSSYDPTSPA NSYAYYRSVD QDHSDILHAG ESQRDADTKS SSEASAPPPS RRLRLFGVNL DCGPEPEEDQ ATAMYGYMHH QSPYAAVSAV PNYWSGHLVH EMMVEEI // ID A0A0D9XZA5_9ORYZ Unreviewed; 834 AA. AC A0A0D9XZA5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G09930.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G09930.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G09930.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G09930.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G09930.1; LPERR12G09930.1; LPERR12G09930. DR Gramene; LPERR12G09930.1; LPERR12G09930.1; LPERR12G09930. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 707 790 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 834 AA; 91754 MW; 11B6D17684194972 CRC64; MAAAATAVDG LAAAGEGGGG GVDGLFVELW RACAGPLVNV PAVGERVFYL PQGHIEQVEA STNQVAEQQG TPLYNLPWKI PCKVMNVELK AEPDTDEVYA QLTLLPEKQQ DGNGNANASK DQGEEEEVVP PSATERPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSQHPPTQ ELVAKDLHGV EWRFRHIFRG QPRRHLLQSG WSVFVSAKRL VAGDAFIFLR GENGELRVGV RRAMRQQANI PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPSE FVVPRDLYEE SLKRNHSIGM RFKMTFEGEE AAEQRFTGTI VGIGDSDPSG WADSKWRSLK VRWDETASVP RPDRVSPWQI EPANSPSPVN PLPAPRTKRA RPNVISSSSD LSAVNKEVAS KVIANSQQNV LPRVFHSQEN TNLRSRFGDS NELNTSQKLT MWSSGSNQQK NNAAVQRELG SQGWMSIRRP DGSTELLSGF QPLKDTRNPL SSFPGQISGN RSNTWNTINV HYPDQNVNHN MFPGTWPFMP QDTGFGVNQQ SYLMAPDTTL PQRSLNAKFG GNGAFTSLRA HGIDQRSSGW LGHIEPSSHI DDASSSLIKP QPLVIDHNVQ KTKGSSCMLF GISLDSPAKP EQLISPPSVA FDGKPQQDAL EEDECSDPSK SVKPLDGAQH DSAMEKHQSC PEGARNIQSK QQNGSSRSCK KVHKQGIALG RSIDLTKFTC YDELIAELDR MFDFNGELNS CKNWMVVYTD NEGDMMLVGD DPWNEFCNMV HKIFIYTREE VQKMNPGALN SRSEDSRSTS VERGLAGEGV QGGISTPSLN SENC // ID A0A0D9Y108_9ORYZ Unreviewed; 874 AA. AC A0A0D9Y108; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR12G14610.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G14610.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G14610.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G14610.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G14610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G14610.1; LPERR12G14610.1; LPERR12G14610. DR Gramene; LPERR12G14610.1; LPERR12G14610.1; LPERR12G14610. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 332 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 565 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 753 862 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 332 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 509 565 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 753 862 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 874 AA; 100567 MW; 7D439D1871FB0CEB CRC64; MQEARNNHRM RKSFTTCKEC ISYHYWNHMG EHKKSFLYVM IGDCVAVPAK FANSIRRQIS EVVKLEVPNA LRYILYTFDD INFGEFETEE GISLMGNRTM HSWSLGGTIP KMFAKNFQGH LFGAVKLEVP DGKTYDVEIA KEHNELVFRS GWEVFASAYE LEHGDFLVFG YSGNFHFKVW IFNPSSCEKE LSCVVMNRSI SDDNHRQSPR SDRMHKSCTT CMDCITNHYW RHMDDRERYF FKVILSVSDI KDALAIPKKF AANVRGKISE QVRLEVSDDA SSSEDSKVSM HSGGLQRSKK FRYVLPMMYN MTSAQKAEVN ALEKKIQPQI PLYITAVEKT SVASGSLVFS KDYAVRYLLD QNKTITLCQS GGSKTWHISL DIDTDNLYAI STGWLDFFRD NLLQEGDICV FEASKSKKGV TLTFHPFKES HCPKPPEEES QRKKIQSIQP EIPVFLAVMR NSNCTGARSL VSWKLIPVDL KFFSVTCASR YLPDEDQIMR LRLPKTKYKW KAAFQLNRNT NLRMLTKGWG KFVNDNKLDV HDICLFQLMT NKKKLTMTVH IIRKEDSKSI CCCCVVSGST YIYGCFPAGS LKPSFGIVLL ELIGKDIEEP ENSGDIKKKS TKSFYNSTTM CDMNSAQKAE VDALEKKIQP QIPYYITAMD KASVAAGFMQ DMQINLDINT DGPYALSTGW LDFIQVNQLQ EEFAPASTKS DMNGVMKIGD HSIFVSRSTR IADQQKRKIK EILQVIQYEN PVFAALMRRC SVGHSNMCIM PFSSDYAKNY LPHLDQTIRL QLPKRNNTLL KKKKRNNAWE TEYQIKEGRH WLVQGWRKFV RDNKLEIDDI CLFQLMKDEE QVTMMVHIIR KQQDISSYKI EQDS // ID A0A0D9Y109_9ORYZ Unreviewed; 339 AA. AC A0A0D9Y109; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR12G14620.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G14620.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G14620.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G14620.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G14620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G14620.1; LPERR12G14620.1; LPERR12G14620. DR Gramene; LPERR12G14620.1; LPERR12G14620.1; LPERR12G14620. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 120 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39296 MW; 587D69E0A0103FB8 CRC64; MEKLHAVCKS YVADYYWLHM DDHEKSFIKF MIGGYKNSMT IPEKFSRNLR GKISGIVKLE TRNAQNVLSS EEIEESADSG GVQNSTKPFY CLVTMSSNMT SEQKAVVDAL QEDIKPQIPF YITAMHKATM ADGSLAISKD YAVKYHLHKN ESIRLCHYGG SKTWEINLDI NTDGPYALST GWSEFIKDSK LQEGDICLFE ASENEIGMKL TFHPFKGKHR SKTPDRDDIP TTLCIMAFSR EYAKKYLPNL DQTIRLQLPG KNTTWETAFE IKRRINKQTR WLVRGWKQFV YDNKLEIGDI CLFQLMKDEE VTMTVHIIRK EQDSWFRFLT PINHLQETL // ID A0A0D9Y111_9ORYZ Unreviewed; 1115 AA. AC A0A0D9Y111; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR12G14640.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G14640.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G14640.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G14640.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G14640.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G14640.1; LPERR12G14640.1; LPERR12G14640. DR Gramene; LPERR12G14640.1; LPERR12G14640.1; LPERR12G14640. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 394 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 419 516 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 654 752 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 792 887 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1009 1107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 394 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 419 516 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 654 752 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 792 887 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1009 1107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1115 AA; 127835 MW; 6C206A5DEBFD0236 CRC64; MLSAKGKSSH SLFDPLTVLT ANFTRDQDYG NSILKKHAKV MAEKGCESCS RWQEHFYREH MDVSRIRFFK ILTEDCSHGI SIPEKIAERF SGEITKGFNL KAPSGETWRI GIEKVADELF LKSGWEDFAE AHELQEKDLL IFTCKGNSNG ICSFDVLIFD ASGCEKVSCF FTGKTDSYMF KNFNNTDGQD AEQYLLSDSE DTNTPPYLVV SPHKGSTSIK LSGKTKNSPR KEPEDPNSSR CHVKHDMIEE EDNDYDEHTD DEHDDYSYSR FASYLNVKER KQIFSLVSLQ PGNPVFVTVL KTANIRRKSL LIVPTGFADD HLDSRSHEIV LIRQNKKEKW YVKYYHGSTT RGFNCHRWIK FLRENRMQDG YICIFELMKG AKRVTMTVHV IGKVMAEKVC ASCSKWQEHC YREHMDVCRI RFFKILTEDC SHCISIPEKV AERLSGEITK GFNLKAPSGK TWCVGIEKVA DELLLMSGWE DFAKAHELQE NDLLFFSCKG NSNGICSFDV LIFDASGCEK LSCFFISKKY SYICKHFNNT DSQNAEQYLS SDCEDTNTPP YLLGSPHKDS TSKKLSGKTK TNPSTSTGKE PEDPNSSRCH VKHEMIEEEE SDDDEHTDDE HDDYSYSRFA SYLNSKERKQ IFSLVSLQPG NPVFVTVLKT ANIRRKSLLV VPSGFADEHL DSRSHEIVLI IPNKKEKWYV KYYHGNNTRG FICHRWFKFI RENRLQDGYI CIFELMKGAK RVTMTVHVIG KVDNRNVCGA LYDAGEVMAD KGCESCSKWQ EHYYREHTDG SRICFFRLMT GDFAHRVSIP EKFAKNFNGQ IIKGFNLKAF SGGTWHVDVE KVADEMFLVS GWEDFAKAHE LKENDLLFFT CNGKGSCSFD VLIFDASGCE KMPDFFTSKK YNYMCKHFNN ISGQNVEHCL LSDSDDTSTP SYMAGSHKAA TSKKVNGKTK ISPSKEPENV KQEMIEEEES DGDDEHVDYY YSRFANYLTS EEREEIFSLT SLQPGNPVFV TVLRTGHVHR KNILIVPAGF AANHLDRKSH EIMLVRPNRK EKWYAKYYHA NNTRGFSGYG WIKFICKNKL QEGYVCIFEL MKGAKRPTMT VHVISKINNR FVLLG // ID A0A0D9Y112_9ORYZ Unreviewed; 761 AA. AC A0A0D9Y112; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR12G14640.2}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G14640.2, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G14640.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G14640.2, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G14640.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G14640.2; LPERR12G14640.2; LPERR12G14640. DR Gramene; LPERR12G14640.2; LPERR12G14640.2; LPERR12G14640. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 300 398 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 533 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 655 753 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 300 398 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 438 533 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 655 753 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 761 AA; 86994 MW; BC2ABF2F2837647C CRC64; MLSAKGKSSH SLFDPLTVLT ANFTRDQDYG NSILKKHAKV MAEKGCESCS RWQEHFYREH MDVSRIRFFK ILTEDCSHGI SIPEKVAERL SGEITKGFNL KAPSGKTWCV GIEKVADELL LMSGWEDFAK AHELQENDLL FFSCKGNSNG ICSFDVLIFD ASGCEKLSCF FISKKYSYIC KHFNNTDSQN AEQYLSSDCE DTNTPPYLLG SPHKDSTSKK LSGKTKTNPS TSTGKEPEDP NSSRCHVKHE MIEEEESDDD EHTDDEHDDY SYSRFASYLN SKERKQIFSL VSLQPGNPVF VTVLKTANIR RKSLLVVPSG FADEHLDSRS HEIVLIIPNK KEKWYVKYYH GNNTRGFICH RWFKFIRENR LQDGYICIFE LMKGAKRVTM TVHVIGKVDN RNVCGALYDA GEVMADKGCE SCSKWQEHYY REHTDGSRIC FFRLMTGDFA HRVSIPEKFA KNFNGQIIKG FNLKAFSGGT WHVDVEKVAD EMFLVSGWED FAKAHELKEN DLLFFTCNGK GSCSFDVLIF DASGCEKMPD FFTSKKYNYM CKHFNNISGQ NVEHCLLSDS DDTSTPSYMA GSHKAATSKK VNGKTKISPS KEPENVKQEM IEEEESDGDD EHVDYYYSRF ANYLTSEERE EIFSLTSLQP GNPVFVTVLR TGHVHRKNIL IVPAGFAANH LDRKSHEIML VRPNRKEKWY AKYYHANNTR GFSGYGWIKF ICKNKLQEGY VCIFELMKGA KRPTMTVHVI SKINNRFVLL G // ID A0A0D9Y1E3_9ORYZ Unreviewed; 898 AA. AC A0A0D9Y1E3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G15750.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G15750.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G15750.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G15750.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G15750.1; LPERR12G15750.1; LPERR12G15750. DR Gramene; LPERR12G15750.1; LPERR12G15750.1; LPERR12G15750. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 765 849 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 898 AA; 99737 MW; AE1DE4C890F5875E CRC64; MKLSPSAADA PQALPETDDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHEN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITCISDLDSV RWPNSYWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFSGGGTDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRMDSPLLG FKPDTYQQMA AAALQEIRSG DPLKQPSAAL QYQQTQNLNG GLNSLFANHV LQQMQYQSQQ SPLQAVQPGH FQNTVDSGFL QGQFPHLQLH NPQQLLKEQD LQQQQRQQVL QEQSHQEMPQ QLPSDHRIGD VASESGSAPQ AQSSLLGGPS FYHQNLLEGN SDPSLHLHNN FDNFSSQETS NLLSLPQSGQ LMASDGWPSK RLAVESIHPE VQSMHLKIEK VNHQTSMSHF PGTFPPQSAR GCSIVQGCEA NAENRLLSSS FELQDGMTSV RSDASRETDS LAIPLLRYSG ADLTTENTLA TSNCLGESGT FNSLNNISVN PSQGATFVKV YKSGSLGRSL DISRFSSYCE LRSELERLFG LEGQLEDPVR SGWQLVFVDR ENDILLVGDD PWQEFANSVW CIKILSPQEV QQLVRGGDGL LSSPGARMQQ SNACEDYSVS HNMQNISGNI ASVAPLDY // ID A0A0D9Y1W8_9ORYZ Unreviewed; 298 AA. AC A0A0D9Y1W8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR12G17030.1}; OS Leersia perrieri. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Leersia. OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR12G17030.1, ECO:0000313|Proteomes:UP000032180}; RN [1] {ECO:0000313|EnsemblPlants:LPERR12G17030.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Wing R.A.; RT "Oryza genome evolution."; RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:LPERR12G17030.1, ECO:0000313|Proteomes:UP000032180} RP NUCLEOTIDE SEQUENCE. RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J., RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L., RA Zhang J., Wing R.; RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:LPERR12G17030.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; LPERR12G17030.1; LPERR12G17030.1; LPERR12G17030. DR Gramene; LPERR12G17030.1; LPERR12G17030.1; LPERR12G17030. DR Proteomes; UP000032180; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000032180}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000032180}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 33458 MW; 28918328447AA825 CRC64; MAKGEGDGDG VHRQKFFKIL LPGTFESTLC LPPKFAARLA AAAVTLIDPA GRSWDVELGH NDDQTACFAG TAWRSFVRAN RLVPGHMLVF DRRPGPGLHL AVDMFDHSGC LKDDDADDDD HQIDDEDDDD DEMESGNAAA WRKAFAGGMK KKKEKKRKRS RSLSPPPAAD MTGSCGQDDQ QQQQEEEEEE ELQIDIVRPY QLRLLDLTKS FCDRVGWTSS RSVELSLQQQ RRQGPWEVRV KVSGKGGMMC GGWMQFVNDN NICVHDTCVF KPPPRHLLHH GSLQVHVLRR RTNIITIP // ID A0A0D9Y317_9ORYZ Unreviewed; 323 AA. AC A0A0D9Y317; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G02850.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G02850.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G02850.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G02850.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G02850.1; OGLUM01G02850.1; OGLUM01G02850. DR Gramene; OGLUM01G02850.1; OGLUM01G02850.1; OGLUM01G02850. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 122 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 179 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 122 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 179 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 35895 MW; DFB04B6F293F7378 CRC64; MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEELAAME EDELIHVVQA AELRLPSSTT ATRPSSRYKG VVPQPNGRWG AQIYERHARV WLGTFPDEEA AARAYDVAAL RFRGRDAVTN RAPAAEGASA GELAFLAAHS KAEVVDMLRK HTYDDELQQG LRRGSRAQPT PRWAREPLFE KAVTPSDVGK LNRLVVPKQQ AERHFPFPLR RHSSDAAGKG VLLNFEDGDG KVWRFRYSYW NSSQSYVLTK GWSRFVREKG LRPGDTVAFS RSAAAWGTEK HLLIDCKKME RNNLATVDAI AVDDDARVVV KLFGVDIAGD KTR // ID A0A0D9Y318_9ORYZ Unreviewed; 323 AA. AC A0A0D9Y318; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G02860.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G02860.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G02860.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G02860.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G02860.1; OGLUM01G02860.1; OGLUM01G02860. DR Gramene; OGLUM01G02860.1; OGLUM01G02860.1; OGLUM01G02860. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 34658 MW; 2117656C104C5A50 CRC64; MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA AAAAAVAQQS SRYKGVVPQP NGRWGAQIYE RHARIVDMLR KHTYADELRQ GLRRGRGMGA RAQPTPSWAR EPLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLRRAASSDS ASAAAAAATG KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KGLRAGDAIV FSRSAYGPDK LLFIDCKKNN AAVATTTTCA GDERPTTTTS GAEPRVVRLF GVDIAGGDCR KRERAVEMGQ EAFLLKRQCV VHQRTPVLGA LLL // ID A0A0D9Y5S5_9ORYZ Unreviewed; 660 AA. AC A0A0D9Y5S5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G09880.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G09880.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G09880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G09880.1; OGLUM01G09880.1; OGLUM01G09880. DR Gramene; OGLUM01G09880.1; OGLUM01G09880.1; OGLUM01G09880. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 645 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 660 AA; 73245 MW; 31CFC1BB10AC4996 CRC64; MSSQGAGGGV GDPELFAELW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ ENLPTLPDPP LPEQPRPVVH SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG QPRRHLLTTG WSTFVTSKKL ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PVSVISSQSM HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RLKMSFEGED VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE KTGIGSSEPN CISGHQVVWP GEHPGYGAVT SNEARIATWP ARSAYQAEEP TSKLSSNTAA CGYRTEEVAP NASKVVEGKK EPAMFRLFGV DLMKCTSIST TTDDKSSVGA GEASAKGTGS HEDSGQLSAF SKVTKEHIAA DESPREIQSH QNYTARTRIK VQMHGNAVGR AVDLANLDGY EQLMNELEEM FNIKDLKQKW KVAFTDDEGD TMEVGDDPWL EFCQMVRKIV LYPIEDEKKI EPHPKLLSSA NPEQDQKTGF // ID A0A0D9Y5S6_9ORYZ Unreviewed; 699 AA. AC A0A0D9Y5S6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G09880.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G09880.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G09880.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G09880.2; OGLUM01G09880.2; OGLUM01G09880. DR Gramene; OGLUM01G09880.2; OGLUM01G09880.2; OGLUM01G09880. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77524 MW; 00024F6B584B0743 CRC64; MSSQGAGGGV GDPELFAELW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ ENLPTLPDPP LPEQPRPVVH SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG QPRRHLLTTG WSTFVTSKKL ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PVSVISSQSM HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RLKMSFEGED VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE KTGIGSSEPN CISGHQVVWP GEHPGYGAVS SSVCQNPLVL ESWLKDFNSS NKGVSPTLSE ISQKIFQVTS NEARIATWPA RSAYQAEEPT SKLSSNTAAC GYRTEEVAPN ASKVVEGKKE PAMFRLFGVD LMKCTSISTT TDDKSSVGAG EASAKGTGSH EDSGQLSAFS KVTKEHIAAD ESPREIQSHQ NYTARTRIKV QMHGNAVGRA VDLANLDGYE QLMNELEEMF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE FCQMVRKIVL YPIEDEKKIE PHPKLLSSAN PEQDQKTGF // ID A0A0D9Y8Q9_9ORYZ Unreviewed; 699 AA. AC A0A0D9Y8Q9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G18360.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G18360.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G18360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G18360.1; OGLUM01G18360.1; OGLUM01G18360. DR Gramene; OGLUM01G18360.1; OGLUM01G18360.1; OGLUM01G18360. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 613 693 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 75725 MW; B4D8400E08398FA6 CRC64; MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL SSMPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRNPPYA ELPLEGQIFT GPVFPPNPMA HDHHHHHGFP FLPFPDSSAQ PAGIQGARHA QFASPFPEFH IGNLQPNLML YAGIRLPPAD RAAPAPRPPR IIISTDLTIG SPGKPDDAAC SPSSGGKKID DTKPRGFLLF GQAILTEEQI KNGNSDGRPA SPNWDAEKAP NTSEGSDSGV TQGSPTKNTT PSWSLPYFGG NNISRASEYE LNPGQCKVFV ESEAVGRSLD LSALSSFEEL YACLSDMFSI GSDELRSHLV YRSPAGEVKH AGDEPFCAFV KSARKLRILT DAGSDNLGD // ID A0A0D9YCY8_9ORYZ Unreviewed; 726 AA. AC A0A0D9YCY8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G29850.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G29850.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G29850.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G29850.1; OGLUM01G29850.1; OGLUM01G29850. DR Gramene; OGLUM01G29850.1; OGLUM01G29850.1; OGLUM01G29850. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 726 AA; 79770 MW; 2C190DE8B201AE60 CRC64; MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY LPQGHLEHLG AAPGSGPGAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM REGEDGAACD GEGEDAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL QRPSQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE LRLGVRRAAQ LKNASPFPAL HNQISNTSSL SEVAHAVAVK SIFHIYYNPR LSQSEFIIPY WKFMRSFSQP FSVGMRFKLR YESEDASERR RTGIIIGSRE ADPMWHGSKW KCLVVKWDDD VECRRPNGVS PWEIELSGSV SGSHLSTPHS KRLKSCFPQV NPDIVLPNGS VSSDFAESAR FHKVLQGQEL LGLKTRDGTV NTASQATEAR NFQYTDERSC SINMSNNILG VPRLGVKTPS GNPGFSYHCS GFGESQRFQE VLQGQEVFCP YRGGTLSDAC IRGSGFRQPD GNHAPGAAFK WLAPQGCGIT TSVLPQASSP SSVLMFPQTS SKMPGLEYIY GCLDRNENSR HFKIGPTQDM TRTDQTLRLW PHLISGKVLD ECTRNEKLHS PVGGAEHESN NKCLNTNGCK IFGISLTEKA QAGDEVDCGN ASYHSRLQSL KPQMPKSLGS SCATHFHMLC YRIQDDDRGN ADDARRMLVK FVVMHF // ID A0A0D9YDI3_9ORYZ Unreviewed; 396 AA. AC A0A0D9YDI3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G31260.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G31260.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G31260.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G31260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G31260.1; OGLUM01G31260.1; OGLUM01G31260. DR Gramene; OGLUM01G31260.1; OGLUM01G31260.1; OGLUM01G31260. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 135 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 215 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 135 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 215 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 396 AA; 41535 MW; 5567828A3F7B3590 CRC64; MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG RVCGGGGGAG GAGGKLPSSK FKGVVPQPNG RWGAQIYERH QRVWLGTFAG EDDAARAYDV AAQRFRGRDA VTNFRPLAEA DPDAAAELRF LATRSKAEVV DMLRKHTYFD ELAQSKRTFA ASTPSAATTT ASLSNGHLSS PRSPFAPAAA RDHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPSAGG ESKGVLLNFE DDAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLHAGDV VGFYRSAASA GDDGKLFIDC KLVRSTGAAL ASPADQPAPS PVKAVRLFGV DLLTAPTPAP APVEQMAGCK RARDLAATTP PQAAAFKKQC IELALV // ID A0A0D9YE12_9ORYZ Unreviewed; 403 AA. AC A0A0D9YE12; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G32660.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G32660.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G32660.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G32660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G32660.1; OGLUM01G32660.1; OGLUM01G32660. DR Gramene; OGLUM01G32660.1; OGLUM01G32660.1; OGLUM01G32660. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 182 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 182 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 403 AA; 43506 MW; 2440A67E95E1ACA6 CRC64; MRGEERWQEQ PALASHPSRA TLRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS ASPPVLPPIK DQGARPPTLA ASAAAASSPP PPPPPPPIPP LPPSTSTSAA RPTDMAGVTS KRRSSSASTS SSSGDGAAVS DRPRGVTRKR RSGGRCPRPA ASLRPAAPRP SSHHTAGLRV ILQKELRYSD VSQLGRIVLP KKEAEAYLPI LTSKDGKKSL CMHDLQNAQL WTFKYRYWPN NKSRMYVLEN TGDYVRTHDL QLGDSIVIYK DDENNRFVIG AKKAGDQQAA TVPQVDEHIS TLFPIFPIAQ VDDYLSPMAP QVDISAFVPH ADENHEIFDG ILNSLPEIPV ANVRYSDFFD PFDDGMDMAN TLNANANQSA SLHVTDDKSG HSLIPNPKSG PHM // ID A0A0D9YEC8_9ORYZ Unreviewed; 389 AA. AC A0A0D9YEC8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G33400.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G33400.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G33400.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G33400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G33400.1; OGLUM01G33400.1; OGLUM01G33400. DR Gramene; OGLUM01G33400.1; OGLUM01G33400.1; OGLUM01G33400. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 389 AA; 43292 MW; 052C4F06EFED3C61 CRC64; MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR TACEREDLMG GGGGGGGDRP RKKRGRPRTA AASRDAARPK KDSVGKEMVT YRASPSGSTA VKNEEDADEL PVCELPASSA SPPRHVPEGA LDADGGAARR GAAKTRSLQD DLALASIPPS IRRYKGYVSR RRAVTTAERQ RATEIAHAFR SPLPYCVIRM STMHVYYSFM MRFPTGFSRQ HLPRERTDVV LRDPGGKVWS VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC VFELVAAAEF RVHIFRVVEP AVPAVRLRRV TVTCGRGPT // ID A0A0D9YED3_9ORYZ Unreviewed; 719 AA. AC A0A0D9YED3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G33420.4}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G33420.4, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G33420.4, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G33420.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G33420.1; OGLUM01G33420.1; OGLUM01G33420. DR EnsemblPlants; OGLUM01G33420.2; OGLUM01G33420.2; OGLUM01G33420. DR EnsemblPlants; OGLUM01G33420.3; OGLUM01G33420.3; OGLUM01G33420. DR EnsemblPlants; OGLUM01G33420.4; OGLUM01G33420.4; OGLUM01G33420. DR Gramene; OGLUM01G33420.1; OGLUM01G33420.1; OGLUM01G33420. DR Gramene; OGLUM01G33420.2; OGLUM01G33420.2; OGLUM01G33420. DR Gramene; OGLUM01G33420.3; OGLUM01G33420.3; OGLUM01G33420. DR Gramene; OGLUM01G33420.4; OGLUM01G33420.4; OGLUM01G33420. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 611 652 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 719 AA; 82473 MW; BF583E9A6CEF4FF4 CRC64; MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYCSS PILESRKCSL EEPKLSNQPL QCDLTTEKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER SEGRQPSPAS MIDQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETTY TSLELDYKKA TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH // ID A0A0D9YF29_9ORYZ Unreviewed; 714 AA. AC A0A0D9YF29; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G35360.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G35360.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G35360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G35360.1; OGLUM01G35360.1; OGLUM01G35360. DR Gramene; OGLUM01G35360.1; OGLUM01G35360.1; OGLUM01G35360. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 174 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 714 AA; 78008 MW; 5E3E65FF762822C6 CRC64; MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPA PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGG IRGEVAVALP PHVACRVVDV ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHFES EDVNERRSGM IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASSSK RTKLCPQGNL DVPALYGNGR PDSVETEKFP RVLQGQELMG SRTHRVTCSP QSIDITKSKS FDAWRFLTDT RSCMLGSSTS RLPVQYSGYT HQSVSFGESI GFPEVLQGQE ISQTVPPFQG MLPDACSAKS RYELKNYVCT PATMNGLSSA NEGYCLSLST VPPSPPSSLM LYQTGVPQLE LASKNNDKSG NDSQPALRQH KLLSETSWDQ FKIGKASTPG NATKPGNGGR EVDRTSCRLF GFSLTEKIIP TDKDGEKEVS YETDCQNPRM LDLFGYNCST PGALHALCAA PLGI // ID A0A0D9YIU6_9ORYZ Unreviewed; 673 AA. AC A0A0D9YIU6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G45160.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G45160.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G45160.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G45160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G45160.1; OGLUM01G45160.1; OGLUM01G45160. DR Gramene; OGLUM01G45160.1; OGLUM01G45160.1; OGLUM01G45160. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 576 671 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 576 671 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 75320 MW; C5374C4701D8C845 CRC64; MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETDNCE NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR TPGDCFGMPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IGQGNTYPDI DAAPDDCKKD KDVLHSECNK VAQKAHSSVK QDITKDGPRQ IAAEIMSSGP KTCELTYVRK NSVQPGTSSV SQWNNSKGQE SGGTKSCVVL AVAANSKKFC ITIPPPDQTW LELPRRLPVL PRTKKQARKI LILKDPSMRL WPVLYQCTPK FNGFIAGWAD ISRENNLREG DTCEFELCSN SELSFQVLVP NLQ // ID A0A0D9YJ09_9ORYZ Unreviewed; 724 AA. AC A0A0D9YJ09; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G45580.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G45580.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G45580.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G45580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G45580.1; OGLUM01G45580.1; OGLUM01G45580. DR Gramene; OGLUM01G45580.1; OGLUM01G45580.1; OGLUM01G45580. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 533 635 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 533 635 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 724 AA; 75697 MW; 4AAA010D844F5457 CRC64; MDASAGSSAP HSHGNPGKQG GGGGRGKAPA AEIRGEAARD DVFFADDTFP LLPDFPCLSS PSSSTFSSSS SSNSSSAFTT AAGGGCGGEP SEPASAADGF GELADIDQLL DLASLSVPWE AEQPLFPDDV GMMIEDAMSG QPHQADDCTG DGDTKAVMEA AGGGDDAGDA CMEGSDAPDD LPAFFMEWLT SNREYISADD LRSIRLRRST IEAAAARLGG GRQGTMQLLK LILTWVQNHH LQKKRPRTAI DDGAASSDPQ LPSPGANPGY EFPSGGQEMG SAAATSWMPY QAFTPPAAYG GDAMYPGAAG PFPFQQSCSK SSVVVSSQPF SPPTAAAAGD MHASGGGNMA WPQQFAPFPV SSTSSYTMPS VVPPPFTAGF PGQYSGGHAM CSPRLAGVEP SSTKEARKKR MARQRRLSCL QQQRSQQLNL SQIHISGHPQ EPSPRAAHSA PVTPSSAGCR SWGIWPPAAQ IIQNPLSNMS NPPPSTSKQP KPSPEKPKPK PQAAATAGAE SLQRSTASEK RQAKTDKNLR FLLQKVLKQS DVGSLGRIVL PKKEAEVHLP ELKTRDGVSI PMEDIGTSQV WNMRYRFWPN NKSRMYLLEN TGDFVRSNEL QEGDFIVIYS DIKSGKYLIR GVKVRRAAQE QGNSSGAVGK HKHGSPEKPG VSSNTKAAGG EDGTGGDDSA EAAAAAAAGK ADGGGCKGKS PHGVRRSRQE AAAAASMSQM AVSI // ID A0A0D9YJH7_9ORYZ Unreviewed; 827 AA. AC A0A0D9YJH7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G46840.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G46840.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G46840.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G46840.1; OGLUM01G46840.1; OGLUM01G46840. DR Gramene; OGLUM01G46840.1; OGLUM01G46840.1; OGLUM01G46840. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 827 AA; 93190 MW; 9CFBFF4B38BC3D55 CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD PAQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSTVYGNSR DQPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATDNEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGSV KRDDTRERFR AKIYHYCYCP SQLLPTL // ID A0A0D9YJH8_9ORYZ Unreviewed; 808 AA. AC A0A0D9YJH8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G46840.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G46840.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G46840.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G46840.2; OGLUM01G46840.2; OGLUM01G46840. DR Gramene; OGLUM01G46840.2; OGLUM01G46840.2; OGLUM01G46840. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 808 AA; 90783 MW; 15A2BB4CDE80C308 CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD PAQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSTVYGNSR DQPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATDNEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGHL PMPNKSDN // ID A0A0D9YKK6_9ORYZ Unreviewed; 172 AA. AC A0A0D9YKK6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM01G49620.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G49620.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G49620.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G49620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM01G49620.1; OGLUM01G49620.1; OGLUM01G49620. DR Gramene; OGLUM01G49620.1; OGLUM01G49620.1; OGLUM01G49620. DR OrthoDB; EOG09360S33; -. DR Proteomes; UP000026961; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 156 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 172 AA; 19664 MW; 97B823358339699B CRC64; MGDGNEVIDI SSDSDDGQYG PRTFSGFDKY CWYGNDVTLT KSMHLQIAHV AAVNLPKIPL FVCTVKRTLM TNAKMTFAVQ FSERYINKYI GSPIDDLMVS MAGTTQSYQM RLKRSKDSRA MLTTGWNQLI DAKAFDEGDV CPFHFKEVDD VLVLKITQLR HFFGMHYNYP KY // ID A0A0D9YM67_9ORYZ Unreviewed; 1077 AA. AC A0A0D9YM67; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G03280.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G03280.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G03280.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G03280.1; OGLUM02G03280.1; OGLUM02G03280. DR Gramene; OGLUM02G03280.1; OGLUM02G03280.1; OGLUM02G03280. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1009 1077 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 595 625 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1077 AA; 119585 MW; DF22F373C7D718C5 CRC64; MASMKQQQTP ASSAVTAAAA AASSSATAAV AACEGERKAA AINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMQ KDVDAHVPSY PNLPSKLICL LHGVNLHADP DTDEVYAQMT LQPVNTYGKE ALQLSELALK QARPQMEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIVVRDEK HQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHAAA NSSPFTIFYN PRASPTEFVI PFAKYQKALY SNQISLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFLCPQ PFFGVKRPRQ LDDESEMENL FKRAMPWLGE EVCIKDTQNQ NSTAPGLSLV QWMNMNRQQS SSLANTAAQS EYLQALGNPA VQNLAADELA RQLYVQNNLL QQNCIQFNSP KLPQQMQTMN DLSKAAIPLN QLGAIINPQD QKQDAVNHQR QQNSIQVIPL SQAQSNLVQA QVIIQNQMQQ QKPSPTQNPQ RINGQRLLLS HQQQDQNLQL QQQLLLQQKQ QLQQQQQQQQ NQQQLNKSLG QLVNLASQQS KLFDEELQLQ ILQKLQQQSL MSQSTSTLSQ PPLIQEQQKL ITDMQKQLSN SHSLAQQQMM PQQEIKPSLQ ATPLLPTVQQ EQQQKLLQKQ VSLADVSGVA FQPISSTNVI PTTGGAMIIS GATQSVVTEE MPSCSTSPST ANGNHFTQST KNRHCINTER LPPSTAPMLI PTSIDAVIAT PLMTKELPKP NNNVKQSVVN SKLPNVAPGP QNCINNALQT DNLETSSSAT SLCPSRTDGL VHQGFPSSNF NQHQMFKDAL PDVEMEGVDP SNSGLFGINN DNLLGFPIET EDLLINALDS VKYQNHISTD VENNYPMQKD ALQEISTSMV SQSFGQSDMA FNSIDSTIND GAFLNKNSWP TAPLLQRMRT FTKVYKRGAV GRSIDIGRYS GYEELKHALA RMFGIEGQLE DRQRIGWKLV YKDHEDDILL LGDDPWE // ID A0A0D9YMQ1_9ORYZ Unreviewed; 909 AA. AC A0A0D9YMQ1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G04770.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G04770.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G04770.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G04770.1; OGLUM02G04770.1; OGLUM02G04770. DR Gramene; OGLUM02G04770.1; OGLUM02G04770.1; OGLUM02G04770. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 778 862 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 909 AA; 100843 MW; 6B3D8819741C8779 CRC64; MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWTNSHWR SVKVGWDEST GGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLIWLRDSQ NTGFQSLNFG GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AAALQNTTKQ VSPAMLQFQQ PQNIVGRSSL LSSQILQQAQ PQFQQMYHQN INGNSIQGHS QPEYLQQPLQ HCQSFNEQKP QLQPQQQQQE SHQQQPQHQQ MQQQKHLSNF QTVPNALSVF SQLSSTPQST PSTLQTVSPF SQQHNFPDTN ISCLSPSNVS SMHDTLRSFP SEAASDLPGV PRITPVPVSD PWSSKRVAVE STITSRPHDI SSQIENFDLT PSSIPQNSTL APLPGRECLV DQDGSSDPQN HFLFGVNIDS QSLLMQDGIP SLHNENSSST IPYSTSNFLN PSQDDYPLSQ TLTTPGCLDE SGYVPCSDNA DQVKRPPATF VKVYKSGTVG RLLDITRFSS YHELRSEVGR LFGLEGQLED PLRSGWQLVF VDREDDVLLV GDDPWQEFVN SVSCIKILSP QEVQQMGKPG IELFSTSARR LGNSCDNYMS RQESRSLSTG IASVGSVEF // ID A0A0D9YNS2_9ORYZ Unreviewed; 289 AA. AC A0A0D9YNS2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G07480.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G07480.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G07480.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G07480.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G07480.1; OGLUM02G07480.1; OGLUM02G07480. DR Gramene; OGLUM02G07480.1; OGLUM02G07480.1; OGLUM02G07480. DR OrthoDB; EOG09360KHU; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 31866 MW; F070D16BE4BCDECF CRC64; MEEQMSNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEG EERELRDAKL LVAGVGRRRR GRMWDVKVVA DDGGAYLGRG WLRFARAHGL RDGDLLVFRY DGAAAFTVTV FDDGTMCRRA YHDAAGSGSS SDYDGNDGRG EAAATSQFVV TLRQGNLGKK QAQYLLTNQP TGRRSPAAMA AAAAEQNVPV EFQEAHGYAA REKVVLRMRG RSWTVRLKHT KGRRPRRERA VLRYGWHRFC ADNGLAVGDT CFFRALRSAG SGAGDVDDGD GDHVLSVTVH KADGGDPLE // ID A0A0D9YRH3_9ORYZ Unreviewed; 228 AA. AC A0A0D9YRH3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 12-APR-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G14800.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G14800.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G14800.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G14800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G14800.1; OGLUM02G14800.1; OGLUM02G14800. DR EnsemblPlants; OGLUM02G14800.2; OGLUM02G14800.2; OGLUM02G14800. DR EnsemblPlants; OGLUM02G14800.3; OGLUM02G14800.3; OGLUM02G14800. DR Gramene; OGLUM02G14800.1; OGLUM02G14800.1; OGLUM02G14800. DR Gramene; OGLUM02G14800.2; OGLUM02G14800.2; OGLUM02G14800. DR Gramene; OGLUM02G14800.3; OGLUM02G14800.3; OGLUM02G14800. DR OrthoDB; EOG09360BW5; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 225 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 228 AA; 26172 MW; 8A8C8CEA772F3335 CRC64; MNPPRFFTVR LTTANQRYVR RPAAIAQGYQ LEDGQRLKLV TTHNLMVYIE LKRASGKIYI TTGWPQFIEA TGLQLKEYVV FKVLSRSKMH ATPNALSMKC ASAPGRDINL STELKDYIKD IAQFLHPSNE FYVTTINPTF MKQDRVHFSK QFSMTYIALI VRKKTSQIEV RIPGHPSTTM VLHHSTEKRF NLKSGWTHFP TSNGIQVGTI CIFHFHQTNQ LQATIDVL // ID A0A0D9YRV3_9ORYZ Unreviewed; 267 AA. AC A0A0D9YRV3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G15720.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G15720.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G15720.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G15720.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G15720.1; OGLUM02G15720.1; OGLUM02G15720. DR Gramene; OGLUM02G15720.1; OGLUM02G15720.1; OGLUM02G15720. DR OrthoDB; EOG09360IMJ; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29290 MW; 1B4862E82778B9F5 CRC64; MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC GRLFICCRLG THATFASSST LHHGFSMPPP PARPLVGLES GMLARDVPLL GQARLHDGNQ DGGSAPSRHV PSSGQRVEAQ LSRVSSRRQG RTMKHSIPEP TIETPPILES MFLIAAPPAV KCLRLFGVNI YVLPVSSSGQ PKQESSP // ID A0A0D9YRV4_9ORYZ Unreviewed; 272 AA. AC A0A0D9YRV4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G15730.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G15730.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G15730.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G15730.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G15730.1; OGLUM02G15730.1; OGLUM02G15730. DR Gramene; OGLUM02G15730.1; OGLUM02G15730.1; OGLUM02G15730. DR OrthoDB; EOG09360KAP; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 29864 MW; C099EF4C4796C2CE CRC64; MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS TACGRFFICC RRTCMSFLSL PTTSHRIHGS SVLPQPRAAQ AAHHPFSGHA TLCLGNKASD HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP // ID A0A0D9YTN8_9ORYZ Unreviewed; 649 AA. AC A0A0D9YTN8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G20880.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G20880.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G20880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G20880.1; OGLUM02G20880.1; OGLUM02G20880. DR Gramene; OGLUM02G20880.1; OGLUM02G20880.1; OGLUM02G20880. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 519 612 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 649 AA; 71449 MW; 7E9E9ED107850049 CRC64; MAGSVVAAAA AGGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKPSPQ PPARNKRARP PASNSIAPEL PPVFGLWKSS AESTQGFSFS GLQRTRELYP SSPNPIFSTS LNVGFSTKNE PSALSNKHFY WPMRETRADS YSASISKVPS EKKQEPSSAG CRLFGIEISS AVEATSPLAA VSGVGQDQPA ASVDAESDQL SQPSHANKSD APAASSEPSP HETQSRQVRS CTKVIMQGMA VGRAVDLTRL HGYDDLCCKL EEMFDIQGEL SASLKKWKVV YTDDEDDMML VGDDPWPEFC SMVKRIYIYT YEEAKQLTPK SKLPIIGDAI KPNPNKQSPE SDMPHSDLDS TAPVTDKDC // ID A0A0D9YUH8_9ORYZ Unreviewed; 1071 AA. AC A0A0D9YUH8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G23240.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G23240.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G23240.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G23240.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G23240.1; OGLUM02G23240.1; OGLUM02G23240. DR Gramene; OGLUM02G23240.1; OGLUM02G23240.1; OGLUM02G23240. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 376 469 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1009 1071 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 376 469 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1009 1071 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1071 AA; 121169 MW; C0CE2CEB7903C348 CRC64; MDGAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK KYSHHDMKKN LRNDANEEKR KSSDDMRDGD FEEKKCSRHD MKKNLRNDAN EERRKSSDDM RDGDDEEKKK CSRQDMKKNL RNDADEEKRK SSDDMRDGDD EEKKKRSRHD MKKNSRNDAD EEKRKRKRKC SDDLKKSVLN DASKEATSHS DWRKNRKAGS DAEQRGKKLL NGDKKAKSRK VTTPFFEKMR KIKMQRTSNQ NGEKNMKSDG DSYKKTVPLS VNKGKMEKDG TNKRTLSNTL VAKERKMRPS DSMEMKMKKK KRDASFVQPD ERTAQTFSTK NKEKKRKAPS TPLKREQKER VASSDNKKET KKACIVAIGN EKKNCRDGKK KKRKAAFAFF KFVRDEFEEL LFIPPAVAPS LKDLIDRHVY LEDSEGKCSK IRLSVVDGSL AFYEGWNSFV SEHCIKWGEF LLFEYTPEST FSVRVFGIDS CERLHFSVKS GGKGAVKKRK ERHTLSDDLI SHYNGQYQDS EDIHDGPNVS GESPRSKEPK ITVDAEIGTR NLVAKSINAA SETQDSERVE SGIGYGSLGA LGNKVRNLSN GECDTRSDSV FCIQEKTRRS EVIIISDEAY STQVDEDTMK QTAPSEASEI HHVTINTQKD LERVVDGVCC ESSVALNNKM GNLILGEPKN KNISPACSTE KTNGSEITPT TGAIPLTQEN IDTVKLNTIS CFEEDRSTTR ESELAAAIPT TSETHDSDKD LGQKHQRNSV QVNSIIAVDK YPNDSEMNIS GNIFRIYEAP AGTRCLEKWK RGIVNGRAAL DDIGQVRPEK TQKAGEKLVG NCGAMGESPV DLRIESDVTD TCLKPILNIP IEELSILDSV SISKCGRSRT EVNHLFNQKG ATVQLQTKKE PLKPTGSSGN RKGDKIAVSV NRVFAHQSEL QIPQQENGNF TSCVTPVALL PAKAELLDLD DHSLQFCIPS TIQKWLVFSY SVVQWMQFVE FMLIAVRAEL PKSLPITCRQ KGRYDRNVVI LKDPMRRLWP VFYHDKPVFV GFTAGWKPFA AANNLQAGDV CKFVKEMDED ELAFQVYITR K // ID A0A0D9YV95_9ORYZ Unreviewed; 685 AA. AC A0A0D9YV95; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G25270.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G25270.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G25270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G25270.1; OGLUM02G25270.1; OGLUM02G25270. DR Gramene; OGLUM02G25270.1; OGLUM02G25270.1; OGLUM02G25270. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 599 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 74045 MW; 7F895167843DB16B CRC64; MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS AARVPALVPC RVASVRYMAD PDTDEVFARI HLVPLRAADD GDVEEDGAAA GEEHEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW DQYGGLMRGN ASPCAAAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV GPTPIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS PAATGNSSLN WNTEKGASEG SGSGSGSGVI QNSPTDNTSS ERLQWFRENS TVSELGLEPG QCKVFIESDT VGRNLDLSSL ASFEQLYGRL SEMFCIDSAE LRSRVLYRGA TGEVRHAGDE PFSEFIKLAR RLTILTDAGS DNLGS // ID A0A0D9YWI2_9ORYZ Unreviewed; 409 AA. AC A0A0D9YWI2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G28660.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G28660.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G28660.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G28660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G28660.1; OGLUM02G28660.1; OGLUM02G28660. DR Gramene; OGLUM02G28660.1; OGLUM02G28660.1; OGLUM02G28660. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 199 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 199 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 43774 MW; 8974D16ABCC3BF93 CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY FPLDAAANEK GLLLNFEDRA GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF SRGIGDEAAR HRLFIDWKRR ADTRDPLRLP RGLPLPMPLT SHYAPWGIGG GGGFFVPPSP PATLYEHRLR QGLDFRVFNP AAAMGRQVLL FGSARIPPQA PLLARAPSPL HHHYTLQPSG DGVRAAGSPV VLDSVPVIES PTTAAKRVRL FGVNLDNPHG GGAAAAGESS NHGNALSLQT PAWMRRDPTL RLLELPPHHH HGAESSAASS PSSSSSSKRD AHSALDLDL // ID A0A0D9YYK1_9ORYZ Unreviewed; 1445 AA. AC A0A0D9YYK1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G34080.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G34080.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G34080.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G34080.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G34080.1; OGLUM02G34080.1; OGLUM02G34080. DR Gramene; OGLUM02G34080.1; OGLUM02G34080.1; OGLUM02G34080. DR OrthoDB; EOG09360BAX; -. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008107; F:galactoside 2-alpha-L-fucosyltransferase activity; IEA:InterPro. DR GO; GO:0042546; P:cell wall biogenesis; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR004938; XG_FTase. DR Pfam; PF02362; B3; 1. DR Pfam; PF03254; XG_FTase; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 95 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1270 1375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1270 1375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1445 AA; 161553 MW; 3DB90C8F37265152 CRC64; MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK HIAGAGEQAL PIETHMERSG GGGADGDEER LPLHHGFETE RAAPWAAAES KPPPPPRGRF GRASVRAALA VCFLAIPAVL LLQRWQAGSS PEWLFEIEPP ADGDRDMQDD LPDDLTASQY IGYDKFLGGL LQEGFDEVSC RSRYQFARYH KNFTRIPSSY LLERLRRQEA LQKKCGPGTK SYKQAVKLLR SSQGVNMTTD CNYLFLTVHA GLGNRMLEIA SAFLYALLTN RILLLDRYQE IGDLFCEPFP GTSWLMPSDF PLNYGEFTQS SPESYGNMLQ NKVVGDNTDR SLAGSRPPYM FLYLDGNYEF HDKLFFCEDD QQFLQDVPWL IMRTDMYFIP SLFLIPSYQD ELSRLFPEKD AVFHHLARYL FHPTNSIWYS VKGYYRSYLA KANKTVGIQI RIFEKEGILQ KNGRFPYVLE QILSCAQNEK LLPEISMKDE AEAPTATKNN QTIAVLTTSL SSWYSDQIQK KYSEHPTVDG TRVEVYQPSH EEYQRSKNKK HNMKALAEIY LLSMTDVLIT SGFSTFGYAA QGLSGLTPWI MFRSENHAMP DPPCRRAMSI EPCFHQAPFY DCKAKRNADL GKMVPFVRHC EDVSWGLKVP TPSWAREPLF EKAVTPIDVG KLNRLLVPKQ HAEKHFPLRR TSSDASATAA AATCNSARAC SSTSRTARGS SQSYVLTKGW SRFVREKGLR AGDTIVFSGS AYGPDKLLFI DCKKNNTAAA TGDEKPITSG EATRVVRLFG MDIAGGGGDC RKRERAVEMG QEAFLMKRQC VHSAPHYTVR SAKAI // ID A0A0D9YYK2_9ORYZ Unreviewed; 1348 AA. AC A0A0D9YYK2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM02G34080.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G34080.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G34080.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G34080.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM02G34080.2; OGLUM02G34080.2; OGLUM02G34080. DR Gramene; OGLUM02G34080.2; OGLUM02G34080.2; OGLUM02G34080. DR Proteomes; UP000026961; Chromosome 2. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008107; F:galactoside 2-alpha-L-fucosyltransferase activity; IEA:InterPro. DR GO; GO:0042546; P:cell wall biogenesis; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR004938; XG_FTase. DR Pfam; PF02362; B3; 1. DR Pfam; PF03254; XG_FTase; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 95 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1173 1278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1173 1278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1348 AA; 151123 MW; E8D853F126109F7D CRC64; MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK HIAGAGEQDM QDDLPDDLTA SQYIGYDKFL GGLLQEGFDE VSCRSRYQFA RYHKNFTRIP SSYLLERLRR QEALQKKCGP GTKSYKQAVK LLRSSQGVNM TTDCNYLFLT VHAGLGNRML EIASAFLYAL LTNRILLLDR YQEIGDLFCE PFPGTSWLMP SDFPLNYGEF TQSSPESYGN MLQNKVVGDN TDRSLAGSRP PYMFLYLDGN YEFHDKLFFC EDDQQFLQDV PWLIMRTDMY FIPSLFLIPS YQDELSRLFP EKDAVFHHLA RYLFHPTNSI WYSVKGYYRS YLAKANKTVG IQIRIFEKEG ILQKNGRFPY VLEQILSCAQ NEKLLPEISM KDEAEAPTAT KNNQTIAVLT TSLSSWYSDQ IQKKYSEHPT VDGTRVEVYQ PSHEEYQRSK NKKHNMKALA EIYLLSMTDV LITSGFSTFG YAAQGLSGLT PWIMFRSENH AMPDPPCRRA MSIEPCFHQA PFYDCKAKRN ADLGKMVPFV RHCEDVSWGL KVPTPSWARE PLFEKAVTPI DVGKLNRLLV PKQHAEKHFP LRRTSSDASA TAAAATCNSA RACSSTSRTA RGSSQSYVLT KGWSRFVREK GLRAGDTIVF SGSAYGPDKL LFIDCKKNNT AAATGDEKPI TSGEATRVVR LFGMDIAGGG GDCRKRERAV EMGQEAFLMK RQCVHSAPHY TVRSAKAI // ID A0A0D9Z1C1_9ORYZ Unreviewed; 316 AA. AC A0A0D9Z1C1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G01630.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G01630.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G01630.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G01630.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G01630.1; OGLUM03G01630.1; OGLUM03G01630. DR Gramene; OGLUM03G01630.1; OGLUM03G01630.1; OGLUM03G01630. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 34298 MW; 8A7A4A91C74DCA75 CRC64; MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA AGARFLLPPS STPIYDHHRR HAHAVGYDAY AAATSRQVLF YRPLPPPQQH HPAVVLESVP VRMTAGHAEP PSAPSKRVRL FGVNLDCANS EQDHAGVVGK TAPPPLPSPP SSSSSSSGKA RSIGLSFQGI SNSSYS // ID A0A0D9Z328_9ORYZ Unreviewed; 237 AA. AC A0A0D9Z328; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G06210.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G06210.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G06210.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G06210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0D9Z328; -. DR EnsemblPlants; OGLUM03G06210.1; OGLUM03G06210.1; OGLUM03G06210. DR Gramene; OGLUM03G06210.1; OGLUM03G06210.1; OGLUM03G06210. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26569 MW; C72DB584F9E94066 CRC64; MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK // ID A0A0D9Z3U4_9ORYZ Unreviewed; 556 AA. AC A0A0D9Z3U4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G08230.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G08230.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G08230.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G08230.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G08230.1; OGLUM03G08230.1; OGLUM03G08230. DR Gramene; OGLUM03G08230.1; OGLUM03G08230.1; OGLUM03G08230. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.80.10.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp. DR Pfam; PF02362; B3; 2. DR Pfam; PF13855; LRR_8; 1. DR SMART; SM01019; B3; 2. DR SMART; SM00369; LRR_TYP; 5. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF52058; SSF52058; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS51450; LRR; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 298 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 444 551 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 298 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 444 551 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 556 AA; 62180 MW; D1A13A28DF5E031B CRC64; MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN KISVLPEELG SLSNLQQLSI SQNSLSRLPK SVGDLRNMLL LNVSDNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN LVCLKSLSLN GNKIRQLPQN LLKDCKALQN ISLHDNPISM DQFQQMDGFT EFEARRRKKF DKQIDSNVMM SSTALDEGID LNYQKTNSLA HSACCPDLLQ ILAQRMEDQM ANVRLTDFEF FRIILPGSSK TKLKLPYKFA RELGDRELRE ARLRVAGEGR RPWDVKVFDD DVSGDVYLGR GWQEFARAHD LRDGHFLVFR YDGAAAFTVT VFDETMCRRD YRRHHDAAGT GSSSSSDSSD AAAAAAATAA AEGVGDVALS QFAVTLRQCN LEDKQAQYLN VPMEFQEAHE YARREKVVLR MRGEAWTVRL KHSRRERGQR TAFRYGWHRF CVDNGLAVGD TCFFRVLREG DLRRRGAADD HVLKVAVRKA DGTTLE // ID A0A0D9Z3U5_9ORYZ Unreviewed; 542 AA. AC A0A0D9Z3U5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G08230.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G08230.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G08230.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G08230.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G08230.2; OGLUM03G08230.2; OGLUM03G08230. DR Gramene; OGLUM03G08230.2; OGLUM03G08230.2; OGLUM03G08230. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.80.10.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp. DR Pfam; PF02362; B3; 2. DR Pfam; PF13855; LRR_8; 1. DR SMART; SM01019; B3; 2. DR SMART; SM00369; LRR_TYP; 5. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF52058; SSF52058; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS51450; LRR; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 298 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 430 537 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 298 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 430 537 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 542 AA; 60466 MW; 5CA2520F9F4CADF9 CRC64; MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN KISVLPEELG SLSNLQQLSI SQNSLSRLPK SVGDLRNMLL LNVSDNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN LVCLKSLSLN GNKIRQLPQN LLKDCKALQN ISLHDNPISM DQFQQMDGFT EFEARRRKKF DKQIDSNVMM SSTALDEGID LNYQKTNSLA HSACCPDLLQ ILAQRMEDQM ANVRLTDFEF FRIILPGSSK TKLKLPYKFA RELGDRELRE ARLRVAGEGR RPWDVKVFDD DVSGDVYLGR GWQEFARAHD LRDGHFLVFR YDGAAAFTVT VFDETIGSSS SSDSSDAAAA AAATAAAEGV GDVALSQFAV TLRQCNLEDK QAQYLNVPME FQEAHEYARR EKVVLRMRGE AWTVRLKHSR RERGQRTAFR YGWHRFCVDN GLAVGDTCFF RVLREGDLRR RGAADDHVLK VAVRKADGTT LE // ID A0A0D9Z3U7_9ORYZ Unreviewed; 271 AA. AC A0A0D9Z3U7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G08230.4}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G08230.4, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G08230.4, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G08230.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G08230.4; OGLUM03G08230.4; OGLUM03G08230. DR Gramene; OGLUM03G08230.4; OGLUM03G08230.4; OGLUM03G08230. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30817 MW; 8E6C67FA0461D594 CRC64; MEDQMANVRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRRHH DAAGTGSSSS SDSSDAAAAA AATAAAEGVG DVALSQFAVT LRQCNLEDKQ AQYLNVPMEF QEAHEYARRE KVVLRMRGEA WTVRLKHSRR ERGQRTAFRY GWHRFCVDNG LAVGDTCFFR VLREGDLRRR GAADDHVLKV AVRKADGTTL E // ID A0A0D9Z9I5_9ORYZ Unreviewed; 194 AA. AC A0A0D9Z9I5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 12-APR-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G23890.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G23890.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G23890.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G23890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G23890.1; OGLUM03G23890.1; OGLUM03G23890. DR Gramene; OGLUM03G23890.1; OGLUM03G23890.1; OGLUM03G23890. DR OrthoDB; EOG09360BAX; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 125 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 194 AA; 20923 MW; 27F58A7A0FDDB285 CRC64; MGARTQPTPS WAREPLFEKA MTPNDVGKLN RLVVPKQHAE KHFPLRRTSF DASATAAAAT CNSTRACSST SRTARGRCGG SGTHARTAAR SRFVREKGLR AGDTVVFSRS AYGPDKLLFI DCKKNNTAAA TGDEKPITSG EAARVGRLFG MDITGGGGNF RKRERAVEMG QEAFLMKRQC VVHQRTPALG ALLL // ID A0A0D9ZAM4_9ORYZ Unreviewed; 522 AA. AC A0A0D9ZAM4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27120.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27120.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27120.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27120.1; OGLUM03G27120.1; OGLUM03G27120. DR Gramene; OGLUM03G27120.1; OGLUM03G27120.1; OGLUM03G27120. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 421 515 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 421 515 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 522 AA; 59862 MW; 26E596B807B442B2 CRC64; MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD CEKVFSCAGI RNTCKSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRED SPSEHESVES GDLETSQEPY VLSRRSYLSE FQKEKVDALI QEIQPETTAF VAIMRKSNVQ LPTPFLVISF CYAEVHFPHK SVTVTLQRPC KSKKWHPRFY KRKDARMNIL RGSWVEFVKD NRVQEQDICA FVPTKDARRN FTFTVHLLRV AAAYSRGGTI VDRAGSSLGR TDVKSASEIS IKEEPIDQEE NVSSRNRNGV SDESEEDEDS EGPAHPPYIV PCKSRLSRLQ KKIVEEKVRS IQSKFPVYVA IMKKSNVERS ASRCQLELGA RFAAAVHLPD RRQTVVLQRR GERWATVMQI RSGTRRLLIS GWHRFVRDNR LRVEDICLFE FKTHERWRLT MAVHAIFREQ CC // ID A0A0D9ZAM6_9ORYZ Unreviewed; 762 AA. AC A0A0D9ZAM6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27130.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27130.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27130.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27130.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27130.1; OGLUM03G27130.1; OGLUM03G27130. DR Gramene; OGLUM03G27130.1; OGLUM03G27130.1; OGLUM03G27130. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 660 758 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 660 758 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 762 AA; 85777 MW; 092175FF0DDEAB40 CRC64; MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD NCLQEEDICL FVPTKGGRNF AFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI EEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEIIPDRFVN HFGGKIPGTI KLESPNDPVD TSGRSSDDTA QPSRSERFAR CQRDTSNDRR NTASLTAVSS SSEESENVSL KSNRNGVSDE SQESEDSEGP AGPPYILSWK SKSRLSSLQK KIIKEKVRSI QSEVPIYVAI MNKSNIGLTS SPCQLELGAR YAAAVHLPDR RQAVVLQRMG QRWDTVMQTK SGRCTTRRFL INGWSRFVRD NRLCVGDICL LELKKHESKL TMTVHTIFSQ QS // ID A0A0D9ZAM7_9ORYZ Unreviewed; 838 AA. AC A0A0D9ZAM7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27130.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27130.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27130.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27130.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27130.2; OGLUM03G27130.2; OGLUM03G27130. DR Gramene; OGLUM03G27130.2; OGLUM03G27130.2; OGLUM03G27130. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 539 600 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 736 834 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 539 600 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 736 834 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 838 AA; 94252 MW; A82D7A104DB287D4 CRC64; MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD NCLQEEDICL FVPTKGGRNF AFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI EEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEIIPDRFVN HFGGKIPGTI KLESPNGILY VVEVTECMNK TVLQCGWEAF VDAHHIKVGD SLLFRHIENS CFEVMILDSD GCERVFSCAG IKTNSCVHDK TVDPVDTSGR SSDDTAQPSR SERFARCQRD TSNDRRNTAS LTAVSSSSEE SENVSLKSNR NGVSDESQES EDSEGPAGPP YILSWKSKSR LSSLQKKIIK EKVRSIQSEV PIYVAIMNKS NIGLTSSPCQ LELGARYAAA VHLPDRRQAV VLQRMGQRWD TVMQTKSGRC TTRRFLINGW SRFVRDNRLC VGDICLLELK KHESKLTMTV HTIFSQQS // ID A0A0D9ZAM8_9ORYZ Unreviewed; 1194 AA. AC A0A0D9ZAM8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27140.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27140.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27140.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27140.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27140.1; OGLUM03G27140.1; OGLUM03G27140. DR Gramene; OGLUM03G27140.1; OGLUM03G27140.1; OGLUM03G27140. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 340 440 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 507 607 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 672 765 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 880 980 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1090 1191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 340 440 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 507 607 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 672 765 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 880 980 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1090 1191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1194 AA; 135795 MW; 8B2947B4A3DA2CB4 CRC64; MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL NELARPRGRG FSLICITISS WNFCSVCKVH MYGWTRFQKK KSCDWSKRYV DHLNGKMKCF HLQMSANFGH SMTIPNKFLD HFGGTLSRTI ELVSPKGIVY IVKVTEHMNK TILQCGWEAF VDAHHIEEND SLLFRHIENS RFEVLILDSD GCEKVFTCAG IKKTSSVQER NAAPVDISRS THDETTQSSG SKKFVRCQRA SDSQRGKTAK LAETSSSGES GEEGTDSSTS EDESSYELDD PQMPPGRNYV LSRWTSLSEA QEEKVDMLVQ DIQPEIPVFV AIMKHSNVNS RRACLVIPKR YASAHFPLES QTITLQRQGK NKKWYPMFYI RKDGSGYMLY GCWKNFVRDN HVKEGDMCIF HLTKFTGGEF GATVHLLRET KSGSLGSFHT SHKRFDLRDG RTWPKVTGAR RVSSRPYLTA DRVSLTEEQV RKVEEVVHSI QSEGPMYVSI MNKSNVGTDG LYIIIFGRQF ATRYLPEGEQ TLTLLMTGKS NAWQVKMRPR SGDAQMITTG WRHFVHDNHL QIEDICLFEL MNDESKLTMT VHIIRRNEKS YPGASLGLGK LGTHQASSST SGPEKRNCCS GKSPFKTTIP NPEMKKYCDC CKRYVDHSNG KMKCFHRQMS ANFEHSMIIP NKFLDQFGGK ISRTVELESP KGNVYVVKVS KHMNKTVLQC GWEAFVDAHQ IEENDSLLFC HIENSRFAVL ILDSDGCEKV FSCSGKRRAS GVQERNADPI DVSSSTHNDT AQSSGGERFA RSESGSDSQH REEAKESSSS EHESSYDLVD PQIAPMPGYV LSRGTNLSEA HEEKLDMLVH EIRPEIPLYV TTMKHSNVNS HYASLVIAKH YACAYFPRTS QTITLKWHGK NRKWHPKFYI RKDQVGYILH GRWIDFVRHN HVKEGDVCIF HLKNFNGRKF RATVHLLRET IPHSFGELHI PKRFESRNGR MRLKMTDDRR VSSTECRRGT MEPSTTNVKK EADNEQCNNG QGKRQEPLNF DVSVGSSKPY LTADRVSLTE EQFRKVEENV HSIQSEGPIY VSIMNKSNVG TDGLYIITLG RQFATRYLPE GEQTLTLLTT GTGKAWQVKM RPRSGDARMF TLGWRDFVRD NRLQTEDICL FQLMKNSERG LAMTVHIIRH SERS // ID A0A0D9ZAM9_9ORYZ Unreviewed; 1176 AA. AC A0A0D9ZAM9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27140.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27140.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27140.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27140.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27140.2; OGLUM03G27140.2; OGLUM03G27140. DR Gramene; OGLUM03G27140.2; OGLUM03G27140.2; OGLUM03G27140. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 340 440 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 507 606 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 654 747 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 862 962 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1072 1173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 340 440 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 507 606 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 654 747 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 862 962 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1072 1173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1176 AA; 133738 MW; 929A31089FF0B0A6 CRC64; MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL NELARPRGRG FSLICITISS WNFCSVCKVH MYGWTRFQKK KSCDWSKRYV DHLNGKMKCF HLQMSANFGH SMTIPNKFLD HFGGTLSRTI ELVSPKGIVY IVKVTEHMNK TILQCGWEAF VDAHHIEEND SLLFRHIENS RFEVLILDSD GCEKVFTCAG IKKTSSVQER NAAPVDISRS THDETTQSSG SKKFVRCQRA SDSQRGKTAK LAETSSSGES GEEGTDSSTS EDESSYELDD PQMPPGRNYV LSRWTSLSEA QEEKVDMLVQ DIQPEIPVFV AIMKHSNVNS RRACLVIPKR YASAHFPLES QTITLQRQGK NKKWYPMFYI RKDGSGYMLY GCWKNFVRDN HVKEGDMCIF HLTKFTGGEF GATVHLLRET KSGSLGSFHT SHKRFDLRDG RTWPKVTGAR RVSSRPYLTA DRVSLTEEQV RKVEEVVHSI QSEGPMYVSI MNKSNVGTDG LYIIIFGRQF ATRYLPEGEQ TLTLLMTGKS NAWQVKMRPR SGDAQMITTG WRHFVHDNHL QIEDICLFEL MNDERASLGL GKLGTHQASS STSGPEKRNC CSGKSPFKTT IPNPEMKKYC DCCKRYVDHS NGKMKCFHRQ MSANFEHSMI IPNKFLDQFG GKISRTVELE SPKGNVYVVK VSKHMNKTVL QCGWEAFVDA HQIEENDSLL FCHIENSRFA VLILDSDGCE KVFSCSGKRR ASGVQERNAD PIDVSSSTHN DTAQSSGGER FARSESGSDS QHREEAKESS SSEHESSYDL VDPQIAPMPG YVLSRGTNLS EAHEEKLDML VHEIRPEIPL YVTTMKHSNV NSHYASLVIA KHYACAYFPR TSQTITLKWH GKNRKWHPKF YIRKDQVGYI LHGRWIDFVR HNHVKEGDVC IFHLKNFNGR KFRATVHLLR ETIPHSFGEL HIPKRFESRN GRMRLKMTDD RRVSSTECRR GTMEPSTTNV KKEADNEQCN NGQGKRQEPL NFDVSVGSSK PYLTADRVSL TEEQFRKVEE NVHSIQSEGP IYVSIMNKSN VGTDGLYIIT LGRQFATRYL PEGEQTLTLL TTGTGKAWQV KMRPRSGDAR MFTLGWRDFV RDNRLQTEDI CLFQLMKNSE RGLAMTVHII RHSERS // ID A0A0D9ZAN5_9ORYZ Unreviewed; 1024 AA. AC A0A0D9ZAN5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27190.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27190.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27190.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27190.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27190.1; OGLUM03G27190.1; OGLUM03G27190. DR Gramene; OGLUM03G27190.1; OGLUM03G27190.1; OGLUM03G27190. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 102 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 294 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 398 491 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 623 684 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 726 819 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 929 1024 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 102 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 294 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 398 491 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 623 684 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 726 819 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 929 1024 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1024 AA; 117910 MW; 66421307F960D9E3 CRC64; MRVENKRGNR SWGTDAKRTH PNSIFNQLVR YGYIGTGFPD MNCSLTWSLT GGPSLPSFFP SAHLLLSLAL FFFLCIQSNH RMSKSGCERC RGRGFWDTDD QDTYFFKVMI GGFRRQMTIP YKFAENFRDQ IQGTIKLKAR NGNTCSVLVD KCSNKLVLTK GWAEFANSHD IKMGDFLVFR YTGNSQFEVK IFDPSGCVKA ASHNAVNIGQ HAQNMQGDPI EILSCSDEHL RAQSLTTERQ NQPEKDVIDN CNKKMKTEHA SSSEDDQETP TAEVHRMKVE EMVRAIHSNH PVFVAVMKKS NVTRQPCYVA ISRKYANEYF PGGDQMLTLQ RHGKRWQVKF CISKRKLRML SKGWRKFTRD NELQVGDTCL FELLKNENPC GQKMRKLNTR STARDDQEKY FFKVMIGDFH KRMTIPDKFA RHFKGVISKT IKLEPRSGYT FDVQVTKKLN ILVLGSGWES FVNAHDLNMG DFLVFKYNGD FLLQVLIFDP SGCEKSTSCS MENAIDHVGQ GWKEHNDIST SCHDQPKGNK HWMQKDSSSK GNKIGNTRSS NTPSKFSGCI LPRGTCLPVV QEKKMKEKIQ AIHSKTPMYG NVMTKCNVSG SPCVLEITQL YDDAYLPFNN GQELMLRHRD KSWKVRFYRF KNKSRKLTQG WKRFVHDNYL RMGDLCLFEI LKNKYTMNQV HCKLDTECLR LAGCKKNQES YKMRRPGARC REGHAHFNGN HIDGQYKNFF KVMIGRFRER MIIPNEFLQY FRGKIPRTIK LQLRDGCTYD VQVTKNLGKI SLQSGWKAFV TAHDLQMGDF LVFNYDGISK LKVLIFGPSG CEKVHSRPTL KNATHCGEKW EEPLHISSNS HDLPVKSPQN VSKSEKQWDS SEQENDTANI EEVALQGDDL QGHPVLNCIL PKHTRLTDMQ KQQLESKVGA IHSEIPIYGC ILRKSRVHGK SQTVDICREY ADVYLPFKEL NMTLQRHGKN WEVLCRTKDT RTKRLSTGWS RFAQENNLQV GDICLFELLK KKEYSMNVHI IPKK // ID A0A0D9ZAN7_9ORYZ Unreviewed; 173 AA. AC A0A0D9ZAN7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27210.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27210.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27210.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27210.1; OGLUM03G27210.1; OGLUM03G27210. DR Gramene; OGLUM03G27210.1; OGLUM03G27210.1; OGLUM03G27210. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 173 AA; 19924 MW; 24FB43A54C95743F CRC64; MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS RTDLTRLQKN ILTEKVKAIN SETPIYGYVM NNSSIHGIPC TVEISKKYAD VYLPFEDGTV VLQHHGKSWN VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII RRK // ID A0A0D9ZAN8_9ORYZ Unreviewed; 723 AA. AC A0A0D9ZAN8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM03G27220.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM03G27220.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM03G27220.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM03G27220.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM03G27220.1; OGLUM03G27220.1; OGLUM03G27220. DR Gramene; OGLUM03G27220.1; OGLUM03G27220.1; OGLUM03G27220. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000026961; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 253 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 389 467 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 601 715 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 253 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 389 467 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 601 715 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 80575 MW; A4D7D7629E6129A4 CRC64; MGMLKIGENC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF DPSGCEQASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS AYHREEKKEG DDEDEDEDED EDEDEDEDKD GEDRYYFCRH GGRVTEYNLS KGDKEEISRV PVPVEPGNPV LVKVIHASHL LSSRYSTVGV SPEFAGRYLG PAMAREVVME RGGGGGGGDQ WHVRFVRRES SRGFHGTGWR RFARDNGLLA HDVCLFELRL VDGAGAGDRL RRRPRPTMAV HVLRRARTAA FARSGKNTAT GAIWPTTTVP ARFANNFNGH ISEEVNLRSP SGETWSIGVA NSDAGELVLQ PGWKEFVDGN GIEEGDCLLF RYSGVSSSFD VLIFDPSGCE KASPHFVGSH GFGRAENSAG AEQGGRNGRR TPPIVDGDNG HRHHLEMTLH RNSCRSIPRA CKRSLFSDET EAKENDGEDE DEDVVAAAEG GRYGEYYFSR HGRVAEYNLR EEDREEISRV PVPVLPGNPV FVQVIHSSHV RSSKYCIVGV SPEFAGKYLG AVEREVVLER ASRGGEWHVL FVHRQNTRGF YGAGWRQFAG DNRLVAHDIC LFELTMVDAA AGGGGNRRRR WSRRPTMTVH VLRRVRGRFV LLR // ID A0A0D9ZJ74_9ORYZ Unreviewed; 142 AA. AC A0A0D9ZJ74; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM04G08100.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G08100.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G08100.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G08100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G08100.1; OGLUM04G08100.1; OGLUM04G08100. DR Gramene; OGLUM04G08100.1; OGLUM04G08100.1; OGLUM04G08100. DR OrthoDB; EOG09361BTV; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 142 AA; 14370 MW; 3C0BA6C0055579F7 CRC64; MGSRGDHGGG GGAARATQLK VLVPSSFRKM RICDELAAQL GVGGGAPRAA TARVASPLGK AWDVGVVRDG DGGAFLGRGW AEFAAAHGLG VGWFVVLRHG GGGGGVLAVE AFDTTCCLRE FGAPPAAHFY FALEAFSHDG EC // ID A0A0D9ZJ77_9ORYZ Unreviewed; 280 AA. AC A0A0D9ZJ77; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM04G08130.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G08130.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G08130.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G08130.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G08130.1; OGLUM04G08130.1; OGLUM04G08130. DR Gramene; OGLUM04G08130.1; OGLUM04G08130.1; OGLUM04G08130. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 174 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 174 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 31818 MW; 8901BCAB82E300E6 CRC64; MHISLPFLQR IPDKFVRDYI TGENLNSNMA IILSPLGKSW RVELDKDRSG VFFGGGWLQF LSFHGISRGD VVIFRYEGNL VFKISVFGPN GRQKDFKAKG ISIHQGTGEQ QEAPSFSRRK CNNKKKSRFG EDDGNQQEMP CSRKGSGNKG RTSDRETKRM RKTRSVYEIG PRSWIKKEIN EYVLERCILS LARTFCESIA LAEESSITLM MIDTTSTQGD QGGSSSSRSW EVTGRRYKDA CYLLGAGWRR FCEDNGVRSG DVCVFTVLDT SLWRVDIERC // ID A0A0D9ZJ79_9ORYZ Unreviewed; 146 AA. AC A0A0D9ZJ79; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM04G08150.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G08150.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G08150.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G08150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G08150.1; OGLUM04G08150.1; OGLUM04G08150. DR Gramene; OGLUM04G08150.1; OGLUM04G08150.1; OGLUM04G08150. DR OrthoDB; EOG09361B2H; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 15005 MW; 0CD44D9BA87EE601 CRC64; MPGDHAGAGA AVGAAAKAMQ LKVLMPSSFH KMHISDELAA HLLGERGDGG GGGAARRAAR VVSPVGKIWD VEVGRDGDGD GGAFLGRGWA EFAAAHGLGV GWFVVVRHEG GGVLTVKLFD TTCCLKDFAA PPAGNRSKDY LHAKFK // ID A0A0D9ZJY6_9ORYZ Unreviewed; 212 AA. AC A0A0D9ZJY6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM04G10060.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G10060.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G10060.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G10060.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0D9ZJY6; -. DR EnsemblPlants; OGLUM04G10060.1; OGLUM04G10060.1; OGLUM04G10060. DR Gramene; OGLUM04G10060.1; OGLUM04G10060.1; OGLUM04G10060. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 22326 MW; A49FD63B8CEAE1F5 CRC64; MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID // ID A0A0D9ZL54_9ORYZ Unreviewed; 676 AA. AC A0A0D9ZL54; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G13380.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G13380.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G13380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G13380.1; OGLUM04G13380.1; OGLUM04G13380. DR Gramene; OGLUM04G13380.1; OGLUM04G13380.1; OGLUM04G13380. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 513 605 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 676 AA; 75086 MW; 9344189EE7F99B85 CRC64; MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFASSHVEF NSKNEPSILS NQFYWSMRDS KTDSFSASTN KARVERKQEP TTVGCRLFGI EISSAVEEAL PAATVSGVGY DQTVLSVDVD SDQISQPSNG NKSDAPGTSS ERSPLESQSR QVRSCTKVIM QGMAVGRAVD LTKLNGYGDL RSKLEEMFDI QGDLCPTLKR WQVVYTDDED DMMLVGDDPW DEFCSMVKRI YIYSYEEAKL LAPKSKLPVI GDTIKLSSMN SSHESVDLDN HASCQEVPKT GKTAWKRHSG KCMPFQIVLC FGRSLGVLVW CPDLVD // ID A0A0D9ZL55_9ORYZ Unreviewed; 592 AA. AC A0A0D9ZL55; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G13380.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G13380.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G13380.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G13380.2; OGLUM04G13380.2; OGLUM04G13380. DR Gramene; OGLUM04G13380.2; OGLUM04G13380.2; OGLUM04G13380. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 521 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 592 AA; 65958 MW; 0C580F9CCB65A281 CRC64; MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFDVDSDQI SQPSNGNKSD APGTSSERSP LESQSRQVRS CTKVIMQGMA VGRAVDLTKL NGYGDLRSKL EEMFDIQGDL CPTLKRWQVV YTDDEDDMML VGDDPWDEFC SMVKRIYIYS YEEAKLLAPK SKLPVIGDTI KLSSMNSSHE SVDLDNHASC QEVPKTGKTA WKRHSGKCMP FQIVLCFGRS LGVLVWCPDL VD // ID A0A0D9ZPP9_9ORYZ Unreviewed; 400 AA. AC A0A0D9ZPP9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM04G22780.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G22780.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G22780.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G22780.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G22780.1; OGLUM04G22780.1; OGLUM04G22780. DR Gramene; OGLUM04G22780.1; OGLUM04G22780.1; OGLUM04G22780. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 400 AA; 42806 MW; 2F6846D46CECB091 CRC64; MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DANALSLRMP GWQRPAPLRS LELPPHVPAG AAGAESSAAS SPSSSSSSKR EAHSSLDLDL // ID A0A0D9ZS17_9ORYZ Unreviewed; 1036 AA. AC A0A0D9ZS17; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G28480.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G28480.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G28480.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G28480.1; OGLUM04G28480.1; OGLUM04G28480. DR Gramene; OGLUM04G28480.1; OGLUM04G28480.1; OGLUM04G28480. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 224 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 933 1017 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 224 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1036 AA; 114229 MW; 99568657BC3E46AE CRC64; MRNHGFPPRK VGIFRAKQPR SAASHTGAAA GERLGSQDQE REGKRRKGEE GSTTTLLRII AIYCPHPTTT PTPVYSTPQP LLLPPREKAK TGVLRNAAAL LDEMQLMGET QGAKKVINSE LWHACAGPLV CLPQRGSLVY YFPQGHSEQV AATTRKIPNS RIPNYPNLPS QLLCQVHNIT LHADKDTDEV YAQMTLQPVN SETDVFPIPT LGAYTKSKHP TEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLL GVRRATRQQT MLSSSVLSTD SMHIGVLAAA AHAASSGSSF TIYYNPRTSP SPFVIPVARY NKATYMQPSV GMRFAMMFET EESSKRRYTG TVVGISDYDP MRWPNSKWRN LQVEWDEHGY GERPERVSIW DIETPENTLV FPSSTLNSKR QCLPGYGVSV PGMEIGSANM SSFPRAQGNP YGSLQHIPAV GSELAIMLLN QSGQTLGSPL SFHQSSYSSI IQNVKQNYIP PLTVSTSACL TKQESLPSDD AQHQFHMANM QNGDLEGSEV QPVIDLISES KLNATSRDPR NTDSYTSRST SEQNSKGEPR GKTRRSKKGL PHKTVSEKSD LSSAPSWICD NQQVGLESKL VGCDEQVNCG NIEDSSGALT QGNFVGQPHG HQVEQKGVLS PPKVESSKSP DGGKSVNSFP NQGCFSQFID GLDWMTQPSY YQDSNVIQPA GVSENIFSSS ADIPPSMIAD TMETFQASCL SDCLPNSIQE FISSPDLNSL TFLSPDMQNL EVQLQHDGSN LPSTSNSFVQ MSFSEESASQ SENLSGLHME STHRSINTTS CSQPMSTGGF DAGMYSKLPR LKESQILSLP EIHTNSMGTS ACSMDATEYS LDRSAKPMKP PVRTYTKVQK QGSVGRSIDV TGFRNYHELR SAIACMFGLQ GKLEHPGSSE WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGMHVLN DCIQAA // ID A0A0D9ZS94_9ORYZ Unreviewed; 843 AA. AC A0A0D9ZS94; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G29070.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G29070.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G29070.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G29070.1; OGLUM04G29070.1; OGLUM04G29070. DR Gramene; OGLUM04G29070.1; OGLUM04G29070.1; OGLUM04G29070. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 744 828 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93668 MW; 1FD8DE1E9BBE38E5 CRC64; MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEGGWLE KKCLNSELWH ACAGPLVCLP TVGTRVVYFP QGHSEQVAAS TNKEVEGHIP NYPNLPAQLI CQLHDVTMHA DVETDEVYAQ MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR RAAERVFPPL DFTQQPPAQE LIARDIHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN EKNQLLLGIR RASRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF VIPLSKYIKA VFHTRISVGM RFRMLFETEE SSVRRYMGTI TEVSDADPVR WPSSYWRSVK VGWDESTAGE RPPRVSLWEI EPLTTFPMYP SLFPLRVKHP WYSGVASLHD DSNALMWLRG VAGEGGFQSL NFQSPGIGSW GQQRLHPSLL SSDHDQYQAV VAAAAASQSG GYLKQQFLHL QQPMQSPQEH CNLNPLLQQQ ILQQASQQQI INPDAQNIQT MLSPSAIQQQ LQQMQQVQND QKQKIQPDQS YQVPTSAVLP SPTSLPSHLR EKFGFSDPNA NSSSFITSSS SDNMLDSSFL QGSSKAVDLS RFNQPVASEQ QQQQQQQQAW KQKFMGSQSV SFGGSVLHNS PTSKDGSVEN KIGRDVQNQS LFSPQVDSSS LLYNMVPNLT SNVSDGNLST IPSGSTYLQN AMYGCLDDSS GFLQNTGEND PATRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMFGI KGQLDDPDRS GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KMGKQGNDPR YLS // ID A0A0D9ZS95_9ORYZ Unreviewed; 839 AA. AC A0A0D9ZS95; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G29070.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G29070.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G29070.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G29070.2; OGLUM04G29070.2; OGLUM04G29070. DR Gramene; OGLUM04G29070.2; OGLUM04G29070.2; OGLUM04G29070. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 740 824 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 839 AA; 93255 MW; 88D2500896FD6BA0 CRC64; MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEEKKCL NSELWHACAG PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET DEVYAQMTLQ PLNPQEQNDA YLPAEMGIMS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE RVFPPLDFTQ QPPAQELIAR DIHDIEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL SKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITEVS DADPVRWPSS YWRSVKVGWD ESTAGERPPR VSLWEIEPLT TFPMYPSLFP LRVKHPWYSG VASLHDDSNA LMWLRGVAGE GGFQSLNFQS PGIGSWGQQR LHPSLLSSDH DQYQAVVAAA AASQSGGYLK QQFLHLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQIINPD AQNIQTMLSP SAIQQQLQQM QQVQNDQKQK IQPDQSYQVP TSAVLPSPTS LPSHLREKFG FSDPNANSSS FITSSSSDNM LDSSFLQGSS KAVDLSRFNQ PVASEQQQQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK DGSVENKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVS DGNLSTIPSG STYLQNAMYG CLDDSSGFLQ NTGENDPATR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK QGNDPRYLS // ID A0A0D9ZSF4_9ORYZ Unreviewed; 433 AA. AC A0A0D9ZSF4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM04G29460.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G29460.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G29460.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G29460.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G29460.1; OGLUM04G29460.1; OGLUM04G29460. DR Gramene; OGLUM04G29460.1; OGLUM04G29460.1; OGLUM04G29460. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 297 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 297 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 48629 MW; 52F0C2DBD79D9149 CRC64; MADTRGSTSS GGGDGRGREG HDDFAGGGQY NRYHRILEAV PSPLVRRENV AHHQYPTGLI HHPSSTMPVA PCSYVPRYTM VPTSAMVPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN FQDLRPMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP HATPFHINNH DTDQGFFTLS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTHAKK AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSHN SANLTIRFNC REYRVILRKE LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE ECGFAISLLT KKT // ID A0A0D9ZSF5_9ORYZ Unreviewed; 377 AA. AC A0A0D9ZSF5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM04G29470.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G29470.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G29470.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G29470.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G29470.1; OGLUM04G29470.1; OGLUM04G29470. DR Gramene; OGLUM04G29470.1; OGLUM04G29470.1; OGLUM04G29470. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 241 343 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 241 343 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 377 AA; 41738 MW; 548FDEA7106BE5D1 CRC64; MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPEFLGNRHL HGVDIAGAPP AKATSPATAG GLLTNTAPAT VSQIHARCRR RQIYRCCGLL PRAPPPSDPC AFARAAITAA GSARGLLSHL YGGLEVGGEM REEEKSGGWD GFQTNFRMDQ AFVPASSPFP PVSSSSHSFS SAKISNGPTY TKKAKKSNVK DPPIVFRRSD MESEKNDDNP DQTPVSEPPS MNQNGENLII RFNCREYRVI LRKELTNSDV GNIGRIVMPK RDAEAHLPAL HQREGVTLKM DDFKFETTWN FKYRFWPNNK SRMYVLESTG GFVKHHGLQT GDIFIIYKSS ESGKFVVRGE KAIKPNAIMP VVDCSCKNEL NKSEECGFTI SLQTKKT // ID A0A0D9ZST8_9ORYZ Unreviewed; 523 AA. AC A0A0D9ZST8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM04G30530.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM04G30530.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM04G30530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM04G30530.1; OGLUM04G30530.1; OGLUM04G30530. DR Gramene; OGLUM04G30530.1; OGLUM04G30530.1; OGLUM04G30530. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000026961; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 56719 MW; 4AA8B690CB7B5CFD CRC64; MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APAPAPAAAE LAEAESQEFR YYAKQLTQSD ANNGGGFSVP RLCADHIFPA LNLDDDPPVQ SLTMGDLQGD SWEFRHIYRG TPRRHLLTTG WSKFVNAKQL VAGDTVVFMW CGAPAPERKL LVGVRRAARY SGESACNARG RVQPQEVMEA VRLAAEQAAF RVTYYPRHGA GEFVVPRVEV DKGLTTPWRC GMQVRAQVME AEDTRRLAWL NGTLTNLRHQ QIWRTLEVEW DASAASSSMK NRFVNPWQVQ PVDFPPLPMG LKISNNNISA PVCNGDSLLV PPILMHPQPQ PPADIQGARH NNGHAYADIP SSSTPSMVRT QQLFPRDLQI LVPHTDIVTP QNGSPPDNPV NTPLSASDGM KTIQLFGVTI TSPVQGDTNG AFASAQVNQV PEGVDDETAT EEASDTSLPD SLTNGYNQDG ARL // ID A0A0D9ZV98_9ORYZ Unreviewed; 169 AA. AC A0A0D9ZV98; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM05G06170.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM05G06170.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM05G06170.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM05G06170.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM05G06170.1; OGLUM05G06170.1; OGLUM05G06170. DR Gramene; OGLUM05G06170.1; OGLUM05G06170.1; OGLUM05G06170. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000026961; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 169 AA; 19142 MW; 85FCB99019D0477D CRC64; MVKIKTASQD YLPIPVAVTK ASRLKHGRTL KLMIAHGLKI RVKVAEARDK LYMTIGWKEF IQETGLKMGE SKSVVFRTLS KSRLNVIIFN KEGYSICPIP DKAAKALINN QSSSAPSFST KSTAPRHPSS TNVEGRVHMT KLNRTKPTHP TQVQAPYWIN FYRSKYFTY // ID A0A0E0A0S2_9ORYZ Unreviewed; 311 AA. AC A0A0E0A0S2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM05G21650.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM05G21650.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM05G21650.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM05G21650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM05G21650.1; OGLUM05G21650.1; OGLUM05G21650. DR Gramene; OGLUM05G21650.1; OGLUM05G21650.1; OGLUM05G21650. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000026961; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 311 AA; 35256 MW; 22F23D0197F40714 CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LRRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANEPEPA DEEAVGDKDT STEDAAEQDD SPNAEPLKGA KRRKLRGRRL WVFHKTIITL FVAATDRVFT IIGVPLTTVE T // ID A0A0E0A0S3_9ORYZ Unreviewed; 279 AA. AC A0A0E0A0S3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM05G21650.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM05G21650.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM05G21650.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM05G21650.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM05G21650.2; OGLUM05G21650.2; OGLUM05G21650. DR Gramene; OGLUM05G21650.2; OGLUM05G21650.2; OGLUM05G21650. DR Proteomes; UP000026961; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 31670 MW; 3D32636B1F4641A4 CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LRRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANEPEPA DEEAVGDKDT STEDAAEQDD SPNAEPLKGA KRRKLRGRR // ID A0A0E0A1L0_9ORYZ Unreviewed; 697 AA. AC A0A0E0A1L0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM05G23980.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM05G23980.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM05G23980.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM05G23980.1; OGLUM05G23980.1; OGLUM05G23980. DR EnsemblPlants; OGLUM05G23980.2; OGLUM05G23980.2; OGLUM05G23980. DR Gramene; OGLUM05G23980.1; OGLUM05G23980.1; OGLUM05G23980. DR Gramene; OGLUM05G23980.2; OGLUM05G23980.2; OGLUM05G23980. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000026961; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 697 AA; 75240 MW; 5F43AD13A0B9B24C CRC64; MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AAGGGEVPPA GAVAVPPHVA CRVVGVELRA DAATDEVYAR LALVAEGEML QQNFREGGGE DGAGEMEGCD AEKKPRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL VIHLKEKLVT FNDYKTVRPS QELIAVDLHG TQWKFRHIYR GQPRRHLLTT GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG VRRAVQLRNE ALFEPVNSSD SKLRILSSVA SSLENKSVFH ICFNPRSGAS EFIVPYWRLL KSLNHPFSIG MRFRVCYESE DANERSAGLI SGISEVDPIR WPGSRWKCLL VRWDDSTDSS HQNRVSPWEI ERVGGSVSVT HSLSSGSKRT KLHFPQGSLD TPFLNGNGHP DSMGTENFHR VLQGQEFRGS RSHGVVCSES PGVPNFQSPD NRRFSADMRG YMMPASGPPQ RNTEFTYQPI GFSESLGFPE VLQGQEMSQV DPLFRGATFG ARTQNDRVVS ANSVHRSAAQ SGLLASTLGH PISQFTLSSS KVSSPSSVLM FNQATAPNHE TVGGTNNKGM HVSQFASQEM LSETVTWPGT QLQTPSEITS NQFALARIPA APSGAESGSP KRDAGRSSCR LFGFSLTGNM LGEDGEGLED GAIEAGCENP PVLELFGHSH STPGALHALC AAAPLGM // ID A0A0E0A2E5_9ORYZ Unreviewed; 403 AA. AC A0A0E0A2E5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM05G26380.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM05G26380.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM05G26380.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM05G26380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM05G26380.1; OGLUM05G26380.1; OGLUM05G26380. DR Gramene; OGLUM05G26380.1; OGLUM05G26380.1; OGLUM05G26380. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026961; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 130 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 201 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 130 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 201 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 403 AA; 41997 MW; A2522F3739EDDB5D CRC64; MDSTSCLLDD ASSGASTGKK AAAAAPAAKA LQRVGSGASA VMDAAEPGAE ADSGGERRGG GGGGGGGGGK LPSSKYKGVV PQPNGRWGAQ IYERHQRVWL GTFTGEAEAA RAYDVAAQRF RGRDAVTNFR PLAESDPEAA VELRFLASRS KAEVVDMLRK HTYLEELAQN KRAFAAISPP PPKHPASSPP SSSAAAREHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPPPTTTSSV AAAADAAAAG GECKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD AVGFYRAAGK NAQLFIDCKV RAKPTTTAAA AAFLSAVAAA AAPPPAVKAI RLFGVDLLTG AAAPELQDAG GAAMIKSKRA MDAMAESQAH VVFKKQCIEL ALT // ID A0A0E0A2S9_9ORYZ Unreviewed; 712 AA. AC A0A0E0A2S9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM05G27420.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM05G27420.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM05G27420.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM05G27420.1; OGLUM05G27420.1; OGLUM05G27420. DR EnsemblPlants; OGLUM05G27420.3; OGLUM05G27420.3; OGLUM05G27420. DR Gramene; OGLUM05G27420.1; OGLUM05G27420.1; OGLUM05G27420. DR Gramene; OGLUM05G27420.3; OGLUM05G27420.3; OGLUM05G27420. DR Proteomes; UP000026961; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 78032 MW; 3130136D21F45F17 CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACAGPVAPL PRKGGVVVYL PQGHLEHLGD APAAAAAAAA VPPHVFCRVV DVTLLADAAT DEVYAQLSLV PEKEEVARRA DDGEGEDGDG MKQRFARMPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGV RRAAQLKNGS AFPALYNQCS NLGTLANVAH AVATESVFNI YYNPRLSQSE FIVPYWKFMK SLSQPFSVGL RFKMRYESED ATERRYTGII TGSGDTDPMW HGSKWKCLLV RWDDDAEFRR PNRVSPWEIE LTSSVSGSHL CTPHSKRLKP CLPHVNPEYM VPRGGGCPDF AESAQFHKVL QGQELLGFKS HGGTAAATSQ PCEARHLQYI DERSCSSDAS NSILGVPRLG DRAPLGNPGF SYHCSGFGES QRLQKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSSRAPG VVNKWQAQLH GRAAFHGPPA PALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLESLKQ VPKSLGNSCA TVHEQRPVVG RVIDISTMDM MI // ID A0A0E0A2T0_9ORYZ Unreviewed; 729 AA. AC A0A0E0A2T0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM05G27420.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM05G27420.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM05G27420.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM05G27420.2; OGLUM05G27420.2; OGLUM05G27420. DR Gramene; OGLUM05G27420.2; OGLUM05G27420.2; OGLUM05G27420. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000026961; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 729 AA; 79665 MW; EDCB3D5FE76D9E5F CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACAGPVAPL PRKGGVVVYL PQGHLEHLGD APAAAAAAAA VPPHVFCRVV DVTLLADAAT DEVYAQLSLV PEKEEVARRA DDGEGEDGDG MKQRFARMPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGV RRAAQLKNGS AFPALYNQCS NLGTLANVAH AVATESVFNI YYNPRLSQSE FIVPYWKFMK SLSQPFSVGL RFKMRYESED ATERRYTGII TGSGDTDPMW HGSKWKCLLV RWDDDAEFRR PNRVSPWEIE LTSSVSGSHL CTPHSKRLKP CLPHVNPEYM VPRGGGCPDF AESAQFHKVL QGQELLGFKS HGGTAAATSQ PCEARHLQYI DERSCSSDAS NSILGVPRLG DRAPLGNPGF SYHCSGFGES QRLQKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSSRAPG VVNKWQAQLH GRAAFHGPPA PALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLESLKQ VPKSLGNSCA TVHEQRPVVG RMVAEYQGDG GTDDSDIFIL DVGVGALIM // ID A0A0E0A3Z0_9ORYZ Unreviewed; 199 AA. AC A0A0E0A3Z0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM06G00440.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G00440.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G00440.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G00440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM06G00440.1; OGLUM06G00440.1; OGLUM06G00440. DR Gramene; OGLUM06G00440.1; OGLUM06G00440.1; OGLUM06G00440. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 21586 MW; 72A35E926366F4FB CRC64; MATIVAWESR NLQLQGGGGG HGGGGGERRE YMFEKVVTPS DVGKLNRLVV PKHYAEKYFP LGPAARTSPA GTVLCFEDAR GGGGGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL FGVDLQLRAD ASPALDLQL // ID A0A0E0A413_9ORYZ Unreviewed; 422 AA. AC A0A0E0A413; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM06G00600.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G00600.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G00600.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G00600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM06G00600.1; OGLUM06G00600.1; OGLUM06G00600. DR Gramene; OGLUM06G00600.1; OGLUM06G00600.1; OGLUM06G00600. DR OrthoDB; EOG09360KSB; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR Pfam; PF02362; B3; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 303 401 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 303 401 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 45067 MW; 28F5FAE5B7370190 CRC64; MAPPSDSDDS APIPAGAISK LLIVIAMQTE ALPLVNKFHL VEAEESIFPK GAPWIRYHGN YKGLHVDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGADIG DVYLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE SAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL DKAVTEVMEL DTDPTKLKAK PIIKPKVEPC DDDDELPPPP PPASGSGEDW EATTPLAAGN PFFTALIAKS HLHPKFQMWI PPRFQHRLAE PEARTAAVLH SGGKSWATSY CGHLKMKKLD AGWSEFAVDN RLLVGDACVF ELVAMGATGG LEFQVQILRG GLPAEVVTSK GLTSDQPILI VD // ID A0A0E0A680_9ORYZ Unreviewed; 237 AA. AC A0A0E0A680; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM06G06330.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G06330.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G06330.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G06330.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM06G06330.1; OGLUM06G06330.1; OGLUM06G06330. DR EnsemblPlants; OGLUM06G06330.2; OGLUM06G06330.2; OGLUM06G06330. DR Gramene; OGLUM06G06330.1; OGLUM06G06330.1; OGLUM06G06330. DR Gramene; OGLUM06G06330.2; OGLUM06G06330.2; OGLUM06G06330. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 27497 MW; 7B79A2828CE1516A CRC64; MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESAAKPSP VKQRKRKARA PPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRA KFKVYIIRAS SYYETDD // ID A0A0E0A6A3_9ORYZ Unreviewed; 1055 AA. AC A0A0E0A6A3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G06490.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G06490.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G06490.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM06G06490.1; OGLUM06G06490.1; OGLUM06G06490. DR Gramene; OGLUM06G06490.1; OGLUM06G06490.1; OGLUM06G06490. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 940 1024 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1055 AA; 116888 MW; EF3CCCF5D6C18F5A CRC64; MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDEENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QQVQPSQQNS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PSSSSQLQQL GLPKSPTHRQ GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG SDSIGQLKQS PLQQAPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPSA SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG // ID A0A0E0AC58_9ORYZ Unreviewed; 411 AA. AC A0A0E0AC58; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM06G22930.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G22930.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G22930.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G22930.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM06G22930.1; OGLUM06G22930.1; OGLUM06G22930. DR Gramene; OGLUM06G22930.1; OGLUM06G22930.1; OGLUM06G22930. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 141 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 349 411 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 349 411 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 45749 MW; F0A53FD7ABAC4573 CRC64; MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DATGVGEEEE EESGRRAAAV LVVGPLGKVW RVELRRSPAG DGEAWLGGGW SELAAAHGLG EGWGVVLRLE RRGVASLRVF DPGFCLARFC TPHAGMRTKD RPRFIKLLQQ EDLEKMKIPE KFVQQHLTET YTNNHQNAII VCPLGKFWRV ELQREQPDVL LRDGWAPFLA AHDLSEGNIL LFRYEGNMVF TVEVFLQNGC LKEYKTAALY LTDGTEGPSN APQQSAAKVG VSPVKRKRTR RIEGTCLEGP NRKSRASPIS VKVEPHKKHV SIVSQNSFTK EMTAYSIHSL LSVRGTFCSQ IGLLEACAIT LKISMKKKGS WRVAFKTANT YGYINGPGWR KFCLENEVKE GDRLTFNAIE TTVWHVVIVH C // ID A0A0E0AD97_9ORYZ Unreviewed; 917 AA. AC A0A0E0AD97; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G26000.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G26000.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G26000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0AD97; -. DR EnsemblPlants; OGLUM06G26000.1; OGLUM06G26000.1; OGLUM06G26000. DR Gramene; OGLUM06G26000.1; OGLUM06G26000.1; OGLUM06G26000. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 786 870 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 917 AA; 101782 MW; C2878D1D0985D555 CRC64; MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL LMQGGIPSLQ GENDSTAIPY STSNFLSPSQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ ESRSLSTGIA SVGSVEF // ID A0A0E0ADH2_9ORYZ Unreviewed; 698 AA. AC A0A0E0ADH2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G26560.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G26560.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G26560.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM06G26560.1; OGLUM06G26560.1; OGLUM06G26560. DR EnsemblPlants; OGLUM06G26560.2; OGLUM06G26560.2; OGLUM06G26560. DR Gramene; OGLUM06G26560.1; OGLUM06G26560.1; OGLUM06G26560. DR Gramene; OGLUM06G26560.2; OGLUM06G26560.2; OGLUM06G26560. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75686 MW; 425676FC8C43D331 CRC64; MITFVDSALK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL PPPPPPTPAA GGNYGGFSMF LRGDDDGNKM AAAARGKVRA RVRPEEVVEA ANLAVSGQPF EVVYYPRAST PEFCVKAGAV RAAMRTQWFA GMRFKMAFET EDSSRISWFM GTVSAVQVAD PIRWPNSPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLAPFSPP RKKLCVPLYP ELPIDGQFPT PMFHGNPLAR GVGPMCYFPD GTPAGIQGAR HAQFGISLSD LHLNKLQSSL SPHGLHQLDH GMQPRIAAGL IIGHPAARDD ISCLLTIGSP QNNKKSDGKK APAQLMLFGK PILTEQQISL GDAASVAVKK SSSDGNAENT VNKSNSDVSS PRSNQNGTTD NLSCGGVPLC QDNKVLDVGL ETGHCKVFMQ SEDVGRTLDL SVVGSYEELY RRLADMFGIE KAELMSHVFY RDAAGALKHT GDEPFSEFTK TARRLNILTD TSGDNLAR // ID A0A0E0AE05_9ORYZ Unreviewed; 1127 AA. AC A0A0E0AE05; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM06G27960.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM06G27960.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM06G27960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM06G27960.1; OGLUM06G27960.1; OGLUM06G27960. DR Gramene; OGLUM06G27960.1; OGLUM06G27960.1; OGLUM06G27960. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026961; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 993 1077 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 563 592 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1127 AA; 124545 MW; C429A55B8E2E0F2A CRC64; MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQTQTS LGQAQVLVQN QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQKLLQQQQ QQLLLQQQQQ LSKMPAQLSS LANQQFQLTD QQLQLQLLQK LQQQQQSLLS QPAVTLAQLP LIQEQQKLLL DMQQQLSNSQ TLSQQQMMPQ QSTKVPSQNT PLPLPVQQEP QQKLLQKQAM LADTSEAAVP PTTSVNVIST TGSPLMTTGA THSVLTEEIP SCSTSPSTAN GNHLLQPILG RNKHCSMINT EKVPQSAAPM SVPSSLEAVT ATPRMIKDSP KLNHNVKQSV VASKLANAGT GSQNYVNNPP PTDYLETASS ATSVWLSQND GLLHQNFPMS NFNQPQMFKD APPDAEIHAA NTSNNALFGI NGDGPLGFPI GLGTDDFLSN GIDAAKYENH ISTEIDNSYR IPKDAQQEIS SSMVSQSFGA SDMAFNSIDS TINDGGFLNR SSWPPAAPLK RMRTFTKVYK RGAVGRSIDM SQFSGYDELK HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW EEFVGCVKCI RILSPQEVQQ MSLEGCDLGN NIPPNQACSS SDGGNAWRAR CDQNSGNPSN GSYEQFE // ID A0A0E0AGK1_9ORYZ Unreviewed; 781 AA. AC A0A0E0AGK1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G04870.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G04870.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G04870.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G04870.1; OGLUM07G04870.1; OGLUM07G04870. DR Gramene; OGLUM07G04870.1; OGLUM07G04870.1; OGLUM07G04870. DR OrthoDB; EOG093603HK; -. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 494 595 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 494 595 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 781 AA; 85595 MW; CFA8D2B46B0E2F96 CRC64; MAQPPDAAAA AVPPPVVIDR DVWHACAVPY SGVLPGVGTL VYYIPHGHIE QCAEDPALLL SRLPDPIHPV PCTVADLVLD VDAESGEAYA TISLLPGSHD DTTARRQVPA HGEPGFRFFE KQLSPADVTS NALVLPAGAE HGLPPLDIAA YQTARLFDVR DLRGKRFEFV HIWDKKRCRY MLGDLGVNDN DGWRGFVKAK RLATRDTVVF MRRGGGDGDG DGELLVGVRR APRARGGHHP RPGVEDNKVV SEVWLAMQGV TPFEVTYYPR EGTFEFVVSR DEYIGFSFSP FYPFVPGTTV HLRMNPLQIA QSISGTVRTF DHLRPWRMLE VDWDQAASPI SYRIHRQVNS WQVLRQPQPA ATTSAVRIRD AIVATPQVQI MAPPRPPPPT TTTGMVPVID HDIWLACATP YSGRLPVVGS AVYYFPQGHA EQCHTCTTCL IPDNRHRLRC TSDDSYAMIS LFPGDCYVTH RPLPAARDPV GGQREFCFFD KKLSPSDVAA NGGGSGALFV IPKPSAAEHV LPRIPDLRVT DLQGGRWEFG HTWSDADTDR RSSSHTLAAG WSAFVKAKRL CVGDTVIFMR RRPGGEPLVG VRRKPHGGMP VGIPDKHVAD AWLDASSAQP FRVTYCPWQG TAEFVVRREE VDGSPPLAPG TRVRLLMNPD DTRRRSQPPV YGTVRDVDSR SEWRMLEVDW DRDSPLAPTM NRRVNSWQVQ PVQLALPPQG SDEEAAAATT STAHAGDATT SAPSLALQVQ TMASSSSSSA PIIPSRGSAF RIVNPRDGSQ G // ID A0A0E0AGK2_9ORYZ Unreviewed; 407 AA. AC A0A0E0AGK2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM07G04880.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G04880.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G04880.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G04880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G04880.1; OGLUM07G04880.1; OGLUM07G04880. DR Gramene; OGLUM07G04880.1; OGLUM07G04880.1; OGLUM07G04880. DR OrthoDB; EOG09360CVW; -. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 407 AA; 44529 MW; 40382F28D339C0D1 CRC64; MAALPPPPLA DDGDGIVDRA MWLACAAPNS GRLPAVGSVV FYFVDGHAAQ FCQFPAPLLE QLAVPGPRVF LCTVAGVRLR ADALTNEAYA DITLDPVADN DVPHLAPAPA PAPAAAAGGQ QLRYFVKTLM ISDFDFRIRF SAPMADAKGV FPPLVDAKAV QPLLVKDLQG SPMTFDYGRK GKRVTLAKVW KKFRDDMDFV DGDSVIFMRR RDDGDDDGEL YVGVRRQRTL ERPLRNTMRR SRSPTPPQAA VQEAVLAAAG QAAAGERFRV AYRSRQDGDE FVVPREAVDE GLRARLTSLV EVEFVWAVED GAPPIVGPRG KVTAIATGQL WRNLEIVWDG NSEMDMSANF WQVRPVEEVD ISPSTPPKRL KNCEIDDTAS SSVSVDNGDE QVPTMRQRLE ALFPDNI // ID A0A0E0AGM5_9ORYZ Unreviewed; 334 AA. AC A0A0E0AGM5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G05050.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G05050.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G05050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G05050.1; OGLUM07G05050.1; OGLUM07G05050. DR Gramene; OGLUM07G05050.1; OGLUM07G05050.1; OGLUM07G05050. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 106 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 36764 MW; 70BAB57BFC93A04E CRC64; MEVQPPVVDC DVWFACAAPY SGRLPAVGSR VYYFPHGHAE QCGVPLTPQF PYRHCFPCTV TQLVVSVDGA DEIHATISLQ PGDRDDVPHR RAVPAGCSPG PDQREFCFFE KQLSLSDVFA LTLPESGAND VLPPLQRNLN AADQPLLFIK DLRGVRWKFR HVLSDHDGRH LLTTGWGEFV VAKRLVYGDS VVFMRRPDGE LLLGVRRRGP DGSHPGPESS HATTAARLAS RRWSLPFDVT YYPRVSTDEF VVRREVVDAS PAAFAPGVPV RLLMNPDDTR RRTEMVFGTV RADDSLRAWR KLELAKRARG SGGGRSTATA GAGGLAIAST RPSR // ID A0A0E0AI15_9ORYZ Unreviewed; 1250 AA. AC A0A0E0AI15; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM07G08970.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G08970.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G08970.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G08970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G08970.1; OGLUM07G08970.1; OGLUM07G08970. DR Gramene; OGLUM07G08970.1; OGLUM07G08970.1; OGLUM07G08970. DR OrthoDB; EOG093600LR; -. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1250 AA; 141272 MW; 0C096BD8F59B9525 CRC64; MEPGSSSREG EQQEPANERL IATGGGGGGG SPVSDQELSD GEEVSDGEYQ AGDDFSGYAV RGRGFVEKEH MFDKVVTPSD VGNLGRLVIP WQHAECYFPR DVPANEREGV VLRFEDDAGK PWRFLYRGSS LTLGWSHFFR KNRLDAGDMV SFYRGASEDT RDRLFIHSKR RMHILPTLGY SDPQVHINRL FQLLVRVRTM VSSFGKSGSP SPPNSPLPTV QNFTYKALKD CLQDLHYYSL LSMMGRNHKT TSHCILLCHG VLGIMGFLCS DENMKEDHRM LQVPAFDDLN YSAQDKITRM KEQTMPSSLA DPIYLLPTAI RNLLYLDLSN CSDIVQLPPS LGSSLHMLSA LNLSCCYSLR ALSDSLVCLY DLQILLLSFC HNLQNLPVSF GDLSNLRLLD LSGCRSLRLF PSSFVNLGSL ENLNLSDCIR LMGIPQNFED LQKLEYLNFA GCYRVDLPVY CLTNLVNLKC LTLSNHTDIK DFPYSFTDLK RHLYLSRWWK YNRVHTQCNL KRLLEKIIEF TTCAYCYDAP SSILEETVRE ELNGKRFLLV LNDADIENQC FWTDVWKVSN VGAAGSALIV TTRSKEVASL FGAMKPYYMN PLSKEECFMV FQEHAGCGFD INNDHELTKV GWKIVEKCGG NLLCMKALSG LLWHSETALS EIDSLVGGIV PALRLCYDLL PSHLKQCFKF CSLFPKDYVF VKHHIIQLWI SQGFVYPEED SQPEDTGLQY FNEFLCRSFF QHCPFSNDHE DKFVMHELFH DLARSVSKDE SFSSEEPFFS LPENICRLSL VISDSNTVVL TKEHRHLQSL MVVRRSATEY SSSFVPLLKI LGLNDLLMKC GFLRALNLSC TTIVDLPGSI GRMKHLRFLA MNNTKIKSLP TEIGQLNTLQ TLELKDCCCL IELPESTKNL MKMRYLDVQK EPGNIHVGMP SGLGQLTDLQ TLTVFNIGDD LSHCSIRDLK NLSGLSGHVH ITGLQNITAG DDAKEANLVG KQFLQALTLE WCCSSEEMED ESDKEIANQV LQNLQPNTSI QELAIQNYPG NSFPNWIKDS GLCMLVSITI DNSQDCNEIP YLGDLPCLKF LFIQKMYAVE NFGQRSNSLT TDGKHAPGFP SLEILNLWEM YSLQFWNGTR YGDFPQLRGL SISRCPKLSN LPPLISLLYL SFHCGDQLPA LSEFPSLKSL KIEGFQKLKS VSFCPEMPML QKLEISDCKE LVSIDAPLLS VSNLKVVRCP KLHFGGSWLE DCLMWEEFKR // ID A0A0E0ALF5_9ORYZ Unreviewed; 958 AA. AC A0A0E0ALF5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM07G18530.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G18530.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G18530.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G18530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G18530.1; OGLUM07G18530.1; OGLUM07G18530. DR Gramene; OGLUM07G18530.1; OGLUM07G18530.1; OGLUM07G18530. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 456 557 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 711 761 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 456 557 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 958 AA; 106036 MW; A4F3A5C617DEE6D8 CRC64; MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT PQHQQQQQQQ QGPPGHAPPQ QRPRICFNAH CKDPKSDGPR RRGWRLRNGD FAELCDRCYH SFEHGGFCET FHLEVAGWRN CESCGKRLHC GCIVSVHAFV HLDAGGVECV MCARKSHAAM APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAFE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT QHTTLDPTYA YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDSCSSV STTFKLDSHH PSILKDDPSA VPAGLSPNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ AQLRNGRPRM DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR LVLPKKCAEA YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVPPPPEAN NKVVVPDSSP NAAVPRPIKV NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI KRFRMDSEES MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI KPGAAKKTKG KVDTDNIDVS DGLDTLANLA ILGEGESLPS QPTTRHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCMT VRRRFRTLMM RREKRQQSEK DSGVPRKREP GQSSEPVPQS GSGAHPTSTS SPPPRADTNG EGPEDMSIDN KRTSSPVKNQ IDLNSQPERE DEQSPKSDAT RLLRDNPT // ID A0A0E0ALF6_9ORYZ Unreviewed; 940 AA. AC A0A0E0ALF6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM07G18530.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G18530.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G18530.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G18530.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G18530.2; OGLUM07G18530.2; OGLUM07G18530. DR Gramene; OGLUM07G18530.2; OGLUM07G18530.2; OGLUM07G18530. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 456 557 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 711 761 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 456 557 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 940 AA; 104207 MW; 191F28B2C79EBDD3 CRC64; MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT PQHQQQQQQQ QGPPGHAPPQ QRPRICFNAH CKDPKSDGPR RRGWRLRNGD FAELCDRCYH SFEHGGFCET FHLEVAGWRN CESCGKRLHC GCIVSVHAFV HLDAGGVECV MCARKSHAAM APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAFE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT QHTTLDPTYA YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDSCSSV STTFKLDSHH PSILKDDPSA VPAGLSPNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ AQLRNGRPRM DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR LVLPKKCAEA YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVPPPPEAN NKVVVPDSSP NAAVPRPIKV NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI KRFRMDSEES MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI KPDGLDTLAN LAILGEGESL PSQPTTRHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC MTVRRRFRTL MMRREKRQQS EKDSGVPRKR EPGQSSEPVP QSGSGAHPTS TSSPPPRADT NGEGPEDMSI DNKRTSSPVK NQIDLNSQPE REDEQSPKSD ATRLLRDNPT // ID A0A0E0APB4_9ORYZ Unreviewed; 911 AA. AC A0A0E0APB4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM07G26430.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G26430.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G26430.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G26430.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G26430.1; OGLUM07G26430.1; OGLUM07G26430. DR Gramene; OGLUM07G26430.1; OGLUM07G26430.1; OGLUM07G26430. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 635 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100069 MW; 55CAF4D12FCB9F5D CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS KILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAITDK FGSRPDEGSL QFLKRGRNIG SKSRRLSMDA EEAWELKLYW DEVQELLRPA PTAKPTVVMI EDYEIEEYDE PPVFAKRSIF TIRSTGEQDQ WIQCDDCSKW RRLPLNVIVA SKWTCADNTI DSKSCSCSAP EELTPKELHI VLQQYEDMRR RRNSFGFKQN IPEMDAVSLD AFATAAVYGD VGNQGSPSVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE TEASKKIAWM NRDEPEGSSL SRSPQTVDTT REGDVTMFDK VDINKGHIDL NFHPTAVRDK ERHGGQPRVS MVSLLEVASR PLENYMKQNG LTSLAGEQGS SSTCTGAATV PQPAPVESEE RTSNNDGGRV ATAEQPESMT VDEAGDNQPD KAAGDSAAAL A // ID A0A0E0APB5_9ORYZ Unreviewed; 949 AA. AC A0A0E0APB5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM07G26430.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM07G26430.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM07G26430.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM07G26430.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM07G26430.2; OGLUM07G26430.2; OGLUM07G26430. DR Gramene; OGLUM07G26430.2; OGLUM07G26430.2; OGLUM07G26430. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000026961; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 623 673 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 949 AA; 104115 MW; 8BBD9BCC3AA02C64 CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS KILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK QRQSEREETE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRE GDVTMFDKVD INKGHIDLNF HPTAVRDKER HGGQPRVSMV SLLEVASRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ PAPVESEERT SNNDGGRVAT AEQPESMTVD EAGDNQPDKA AGDSAAALA // ID A0A0E0APS2_9ORYZ Unreviewed; 315 AA. AC A0A0E0APS2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM08G00080.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM08G00080.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM08G00080.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM08G00080.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM08G00080.1; OGLUM08G00080.1; OGLUM08G00080. DR Gramene; OGLUM08G00080.1; OGLUM08G00080.1; OGLUM08G00080. DR Proteomes; UP000026961; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 206 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 206 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 34595 MW; FF235314C243DB54 CRC64; MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PLPNPFPAPS SGFADWSAST SAFTSLAAHS STAPSNAVHY SFSPCYAFWT HYMLNKNAYP TSFPAPHDDH LRLANNNHPR DAPGPASSYG VESFTSPSMA PNICTHMPPI EGPISAKEDK KPEILPRVVK SSDELETRNS NVEFHSETVG TLPESKQGHD SRATKLLNSG EYQVILRKEL TKSDVGNVGR IVLPKKDAEA SLPPLLQRDP LILHMDDMVL PVTWKFKYRY WPNNKSRMYI LDSAGEFLKT HGLQAGDVII IYKNLAPGKF IIRGEKAIHQ QTTNP // ID A0A0E0APS3_9ORYZ Unreviewed; 362 AA. AC A0A0E0APS3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM08G00080.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM08G00080.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM08G00080.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM08G00080.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM08G00080.2; OGLUM08G00080.2; OGLUM08G00080. DR Gramene; OGLUM08G00080.2; OGLUM08G00080.2; OGLUM08G00080. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000026961; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 253 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 253 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 362 AA; 39896 MW; 9F00D466E837E477 CRC64; MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PLPNPFPAPS SGAEPPHPHN HNHNHNHNHN THNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF TSLAAHSSTA PSNAVHYSFS PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTSPSMAPNI CTHMPPIEGP ISAKEDKKPE ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT NP // ID A0A0E0AR15_9ORYZ Unreviewed; 290 AA. AC A0A0E0AR15; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM08G03520.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM08G03520.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM08G03520.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM08G03520.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM08G03520.1; OGLUM08G03520.1; OGLUM08G03520. DR Gramene; OGLUM08G03520.1; OGLUM08G03520.1; OGLUM08G03520. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000026961; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 34 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 290 AA; 30933 MW; 72EAB839D60FCC9C CRC64; MYMDLTLGGA LLQVEEATEE EEEEEEEEQA LGQEPAPAAA AAALVLGRRH GVVVGGGGGG VVVAAEREHM FDKVVTPSDV GKLNRLVVPK QHAERFFPAA AAGTQLCFED RAGTPWRFRY SYWGSSQSYV MTKGWSRFVR AARLSAGDTV SFSRAADGRY FIDYRHCHRH GGRDISFASA ATAMPAAAAA AWPLFGRVQT AAPVSYGGGH GSAAAATMFL DTVAPVAAAG GHRGEVGPSG QRSFRLFGVN VECGGDVDAA AEEEDADDDV DDGDHRRGEE MELVMWTNHR // ID A0A0E0ATY6_9ORYZ Unreviewed; 168 AA. AC A0A0E0ATY6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM08G11380.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM08G11380.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM08G11380.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM08G11380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM08G11380.1; OGLUM08G11380.1; OGLUM08G11380. DR Gramene; OGLUM08G11380.1; OGLUM08G11380.1; OGLUM08G11380. DR OrthoDB; EOG093616NI; -. DR Proteomes; UP000026961; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 19040 MW; F2A4C6FB68A267A2 CRC64; MICLSLTKGK LSAGGNGCSE NKKHGASNES LHNRKSNDFP YVLPHRRHLS PFQEKVVLEK IEAIRCEVPI CVAIMKDYNV DYSSRKCCLL CMGNTWETKM IVSGNLTRWF LTGGWPKFAC DNRLRAGDIC LFELKEERRL TMALTRNIGC RAKGPFNMVS ADCRKDYA // ID A0A0E0ATY7_9ORYZ Unreviewed; 567 AA. AC A0A0E0ATY7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM08G11390.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM08G11390.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM08G11390.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM08G11390.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM08G11390.1; OGLUM08G11390.1; OGLUM08G11390. DR Gramene; OGLUM08G11390.1; OGLUM08G11390.1; OGLUM08G11390. DR OrthoDB; EOG093605DY; -. DR Proteomes; UP000026961; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 311 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 428 524 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 311 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 428 524 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 567 AA; 64454 MW; 752168F09BEE10A0 CRC64; MRKPCECCHT KMKFIWQMNG NFKHSMVIPD RFLSHFAAKS SGTITLETPN GNMYKVGVGK NMKRTLLLSG WEAFVHANSI QENDFLSFRY RGSSRFAVTV FDASGLEKAR TYIDILSSSD DHTTQSSASD TSDECQKVRP NHHGKQAKKP SVSSSEDLSA EDGSSGHRSL ESEDLGRFSS PYYLPGHHKL AKEQKAELVA LVDKIQPEIC VLVIIMNKTN VKRHPDLVVP KDYALLHFPH KNQIITLELP GKRKNWACKF RIRADGGGRH LYLGDFVHDN RILEGDLCIL QPMTKNDASV FTMTVHLIRK ERTDIASSHQ TRKINSGGIS SSSHHDTTRH IHQLVCVCTN RMHVCNFIAH SFHLPVETCV VCIGEGSPDE NDSFKSDDLQ TLPITDYVLS YKSYLSRAQT GQVIMLLGEI RPKKPVLVAV MRKKNVQSSI PFLEIPKEYA AAHFPNESVA ITLQMLGKNK KWHPRLCMEN DKRIYMLRGH WLDFVLDNHV VEGDICLFEP MKGGKFLCSQ FTSFAPRQLI TRVELVFKGL AQVMEEPIQR WHQVFILRKN QLMVWKA // ID A0A0E0AXS2_9ORYZ Unreviewed; 1116 AA. AC A0A0E0AXS2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM08G22050.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM08G22050.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM08G22050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM08G22050.1; OGLUM08G22050.1; OGLUM08G22050. DR Gramene; OGLUM08G22050.1; OGLUM08G22050.1; OGLUM08G22050. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026961; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1116 AA; 123844 MW; 3C23ABC9D7D6C53F CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWDGEEICK KDLNIQNSVV PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ QPHVQHQQIP QQLHHHQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGRQ LLKTDDVPST STSPSTNSNP VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEQRPATGQ DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR NNLLFGVNID GQLGLPLNAD LFANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP QEEMQMRLVG DFGDRFLPNQ ACSSSDGGHP WRITGD // ID A0A0E0AXS3_9ORYZ Unreviewed; 1083 AA. AC A0A0E0AXS3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM08G22050.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM08G22050.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM08G22050.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM08G22050.2; OGLUM08G22050.2; OGLUM08G22050. DR Gramene; OGLUM08G22050.2; OGLUM08G22050.2; OGLUM08G22050. DR Proteomes; UP000026961; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 965 1049 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1083 AA; 120278 MW; 50EA1D37AE37A291 CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQADPDTD EVYARMTLQP VSNVTQCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPRLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDAK QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTIYYN PRASTSEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK TSHWRNIQVA WDEAAPTERR TRVSLWEIEP IIAPFFIYPS PLFTAKRPRL PGMTDDETEM DGLLKRAMPW DGEEICKKDL NIQNSVVPGL NLAQWMNMQH SSSLPGTVVQ PELLNSLSGK PVQNLAAADL SRQISFHPQF LQQNNIQFNT ALVPQQNQQT EQLAKVIPTP NQLGSVIIPQ KVVQDCNSEQ RQHVVTQPVQ GSQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ LQQTQPSVQS HTVLQGGLQQ IQLLQQQQPH VQHQQIPQQL HHHQQQTQQL QPVQQVQQSV QEHQQIKIQP VHVSMDASMN TQVADHQMKL QLLKALQPQQ PLISEQQKML LDLQQQVINS QSAPQQCVQV TNQAISLHNS NTIQYPTQQK VQSHQVQDLT GNVIPNSKSD IATSMGASSL HVAGGRQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE QDTKPYQNVK QTVMIPKTTE QRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLFA NDIGTDKYMD QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH EKDVLLVGDD PWEDFVKCVR CIRILSPQEE MQMRLVGDFG DRFLPNQACS SSDGGHPWRI TGD // ID A0A0E0B0J6_9ORYZ Unreviewed; 1523 AA. AC A0A0E0B0J6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM09G03800.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM09G03800.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM09G03800.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM09G03800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM09G03800.1; OGLUM09G03800.1; OGLUM09G03800. DR Gramene; OGLUM09G03800.1; OGLUM09G03800.1; OGLUM09G03800. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000026961; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 9. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 228 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 436 534 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 687 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 712 805 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 924 1019 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1077 1173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1194 1291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1416 1515 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 228 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 436 534 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 588 687 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 712 805 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 924 1019 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1077 1173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1194 1291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1416 1515 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1523 AA; 173751 MW; 71FC1B21DCC6D15E CRC64; MMNNTPCGHE GSMSYHDNHL QSPSESSSLF NISLPPHSPF QELSGVDSTS LLVSDPPNMQ QFCLRCSWTN PKRLAKPSLA IASLSHQHLA FDKTRCMFIL KIENDTLKTI LKMFAKNVQG LISGVAKLEV PDGKTYDVEI SKEHNELVFR SGWEVFAIAY ELEQGDILDF GYSGNSHFKV QIFNPRASLM ITIDNHPEGK VWMNKPSTTC MDCITNHYWL HMDDRERYFF KVMMSVSDVK DELAIPKKFA ANVRGKIPEQ VRLEVSDGKM YNVQVTEEQD ELVLRSGWAN FSSTYQLKHG DLLVFIHSGH SHFKVLIFDP SCTEKEFSCV VTDNTSHVHE RSISHDNHLQ SPRSEILGKN YSLCSSRKRS RMNPADYPSQ RPDVPSSEDI KDPMSSGGLQ KSKKSCYVLP MLYNMTSAQE AEVLALEKKI QPQIPLYITA MDKTSVASGS LVFCKDYAVR YLLDQNRTIK LCQSGGSKTW DISLDMDTDD LYALSTGWLD FFRGNLLQEG DICVFEASKS KRGVALTFHP FKESHCPKSS EYTLSTKSPT RRVPKRDYFA TNLTNLTDQL ERKVKNKIKF IQSDIPIFLS VMRSSNCTRQ SSLCFSVKYA SKYLPHKDQN MRLRLPETKY KCKAALHIDT STNLHKLLKG WGKFVNDNKL EIHDICLFQL MKNKKKLTVT VHIIRKGEME KSHRVCKNCV ANHYWLHMDN HGKSFIKVMI TDFKNGVTIP AKFARNFGGQ MSGTVKLETR NGKTYEVQVA KELNNLVLRS GWERFASAYE LEKGDILVFI YSGNSHFKVW IYDPSACEKE LPCIITEQLP RVQQRSISHN NHTQLKRNAK SAKLYVDSSG HSKETSEINP ANSPSWKPTE RVPSSEELDE PVDLANVQKA TKSFYSLPRM CNMTSAQKAE VDALEKRIKP QIPLYITVMD KASATDGLLA ISKDYAVSYL LDKNETIKLC HSGRSMTWDI SLDIDTDDQY ALSTGWLDFI RNNHLQEGDI CVFEASKNKR GVALIFHPLK QSHHPKPPGC VPSTKFPRHG VSKPNYIVSR FTTLSGQLKI KVEAKVQAMQ SEIPIFVAVM RESFIRGRSR YMCFSAKYAA KYLPREKNKI MRLRLPNKSY RYKAVFKINN KVHKLGGGWG KFVDDNKIKL GDICLFQLMK NKKKLMMMVM GEKGCESCRK WQEHYYREHM DVSRIRFFRL MTGDFAHGIS IPEKVAEIFS GQITKGFNLK SPSGETWRVG VAKVADELIL KSGWEDFAKA HELQENDLLF FTCNGHGNGS CSFDVLIFDA SGCEKVSCFF TGKKNSYMCK NFNSIGGQVA GQYLSSDSED TSTPSVLIGS PHKASTSKKL SGKTKTNPRK EPEDPNCSHW HVIEEKNTDD DEHADYHYTR FANYLTGEER DEIFSLVSLQ PGNPVFVVVL QTAHVRRRNI LIVPTRFAAD HLERKSHDIL LIRPNRKQKW SVKYYYLSNT TRGFNCHRWI KFIRENRLRE GNVCIFELMK GARRPIMTVH VIGKADNRFV LLG // ID A0A0E0B0K2_9ORYZ Unreviewed; 366 AA. AC A0A0E0B0K2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM09G03830.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM09G03830.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM09G03830.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM09G03830.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM09G03830.1; OGLUM09G03830.1; OGLUM09G03830. DR Gramene; OGLUM09G03830.1; OGLUM09G03830.1; OGLUM09G03830. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000026961; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41903 MW; BE72E5BAC0127F63 CRC64; MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL KAPSGETWRV SVKKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT KTNPNKDDPF STGKEPEDPN SSRSHVKHEM IEEEKSDDDD EHADYEHADY YYSRFANYLT GEEREEIFSL VSLQPGNPVF VTVLQAPQIH RKGLLIVPSG FAADHLDSRS QEILLMRPNK KEKWYVKYYH ASTTRGFNCQ RWIKFIRENR LREGYICIFE LMKGARRVTM TVHVIGKVDD RFVLLG // ID A0A0E0B6E3_9ORYZ Unreviewed; 419 AA. AC A0A0E0B6E3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM09G19780.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM09G19780.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM09G19780.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM09G19780.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM09G19780.1; OGLUM09G19780.1; OGLUM09G19780. DR Gramene; OGLUM09G19780.1; OGLUM09G19780.1; OGLUM09G19780. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000026961; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 419 AA; 47215 MW; C5EB30183928A572 CRC64; MVVREKQGGR MGKGKGKGKE KEGDINCFGR SFFRVLLTLQ SLERMKIPSS FNQCLQNQPT GMVSLVDRSG NKWSAELTSD SEGFFFVHGW KEFVRDNSIQ CGQFLVFTYD KWSQFSVTVF EPSGIDKIST FSAHPSKNVI IKTESDEGGM VTAAITTEKM APALKENNGI TGKRTRDVDY LMEDRVVVFK KSSEANVCES SRRKRAGASA GKSKVTSTSH NSTRGSSCSS DEDNSSSKSP NPPFLMRFLS GEVSRRGVSK GQRQLTVISQ RRPVTEAEKD HALQRAREFK SKNPFAVQIM MESYVYVGFF MNIPCEFVRE CLPRTNKRIT LWDPQGKAWE VNYVYYSDRS VGSFSGGWGK FAVGNNLEKF DVCVFELVQK DNIKVHIYRV VPEITPHKLR SDPKLSSKYT GLRSENQMV // ID A0A0E0B6E4_9ORYZ Unreviewed; 374 AA. AC A0A0E0B6E4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM09G19780.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM09G19780.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM09G19780.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM09G19780.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM09G19780.2; OGLUM09G19780.2; OGLUM09G19780. DR Gramene; OGLUM09G19780.2; OGLUM09G19780.2; OGLUM09G19780. DR Proteomes; UP000026961; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 266 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 266 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 374 AA; 42258 MW; FC6CC8992735520A CRC64; MCLIGCSEWK EEERKKIPSS FNQCLQNQPT GMVSLVDRSG NKWSAELTSD SEGFFFVHGW KEFVRDNSIQ CGQFLVFTYD KWSQFSVTVF EPSGIDKIST FSAHPSKNVI IKTESDEGGM VTAAITTEKM APALKENNGI TGKRTRDVDY LMEDRVVVFK KSSEANVCES SRRKRAGASA GKSKVTSTSH NSTRGSSCSS DEDNSSSKSP NPPFLMRFLS GEVSRRGVSK GQRQLTVISQ RRPVTEAEKD HALQRAREFK SKNPFAVQIM MESYVYVGFF MNIPCEFVRE CLPRTNKRIT LWDPQGKAWE VNYVYYSDRS VGSFSGGWGK FAVGNNLEKF DVCVFELVQK DNIKVHIYRV VPEITPHKLR SDPK // ID A0A0E0B6E5_9ORYZ Unreviewed; 404 AA. AC A0A0E0B6E5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM09G19780.3}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM09G19780.3, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM09G19780.3, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM09G19780.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM09G19780.3; OGLUM09G19780.3; OGLUM09G19780. DR Gramene; OGLUM09G19780.3; OGLUM09G19780.3; OGLUM09G19780. DR Proteomes; UP000026961; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 404 AA; 45520 MW; 5E9FEDD2C04266CE CRC64; MVVREKQGGR MGKGKGKGKE KEGDINCFGR SFFRVLLTLQ SLERMKIPSS FNQCLQNQPT GMVSLVDRSG NKWSAELTSD SEGFFFVHGW KEFVRDNSIQ CGQFLVFTYD KWSQFSVTVF EPSGIDKIST FSAHPSKNVI IKTESDEGGM VTAAITTEKM APALKENNGI TGKRTRDVDY LMEDRVVVFK KSSEANVCES SRRKRAGASA GKSKVTSTSH NSTRGSSCSS DEDNSSSKSP NPPFLMRFLS GEVSRRGVSK GQRQLTVISQ RRPVTEAEKD HALQRAREFK SKNPFAVQIM MESYVYVGFF MNIPCEFVRE CLPRTNKRIT LWDPQGKAWE VNYVYYSDRS VGSFSGGWGK FAVGNNLEKF DVCVFELVQK DNIKVHIYRV VPEITPHKLR SDPK // ID A0A0E0B825_9ORYZ Unreviewed; 138 AA. AC A0A0E0B825; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM10G02950.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM10G02950.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM10G02950.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM10G02950.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM10G02950.1; OGLUM10G02950.1; OGLUM10G02950. DR Gramene; OGLUM10G02950.1; OGLUM10G02950.1; OGLUM10G02950. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000026961; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 67 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 67 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 138 AA; 15194 MW; 6BFB883A6E5E48E8 CRC64; MQHGDSLRLK TSHGLKIKIR IKEAASTLYM TTGWKEFAEA TGLETGETIL FRMPSRSKAR VMLLNRQCLT RCPVKTPSTT SSDKNRSLSP SDQLTRASTC AHPSTSKSIP PLRNGTGSTK RSIADTSFCH QLKLTAEN // ID A0A0E0BBS8_9ORYZ Unreviewed; 698 AA. AC A0A0E0BBS8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM10G13220.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM10G13220.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM10G13220.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM10G13220.1; OGLUM10G13220.1; OGLUM10G13220. DR Gramene; OGLUM10G13220.1; OGLUM10G13220.1; OGLUM10G13220. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026961; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 603 683 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75596 MW; 43AB5A770AA20A0F CRC64; MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDATEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV AYYPRASTPE FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSQISKGF VVSSAPAHDN ISCLLSIGTP QVAEKSDDRK TTPHIMLFGK AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA // ID A0A0E0BD59_9ORYZ Unreviewed; 319 AA. AC A0A0E0BD59; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM10G17040.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM10G17040.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM10G17040.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM10G17040.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM10G17040.1; OGLUM10G17040.1; OGLUM10G17040. DR Gramene; OGLUM10G17040.1; OGLUM10G17040.1; OGLUM10G17040. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000026961; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 319 AA; 33756 MW; 227B4F1B357F2D23 CRC64; MEFTPISPLT RVAGGEEDSE RGAAAAAAWA VVEKEHMFEK VVTPSDVGKL NRLVIPKQHA ERYFPLDAAA GAGGGGGGGG GGGGGKGLVL SFEDRTGKAW RFRYSYWNSS QSYVMTKGWS RFVKEKRLGA GDTVSFGRGL GDAARGRLFI DFRRRRHDAG SFMFPPTAAP PSHSHHHHQR HHPPLPSVPL CPWRDYTTAY GGGYGYGYGY GYGGGSTPAS SRHVLFLRPQ VPAAVVLKSV PVHVAAASAV QEAATTTRPK RVRLFGVNLD CPAAMDDDDD IAGAASRTAA SSLLQLPSPS SSTSSSTAGK KICSLDLGL // ID A0A0E0BFI2_9ORYZ Unreviewed; 284 AA. AC A0A0E0BFI2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM11G03240.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM11G03240.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM11G03240.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM11G03240.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM11G03240.1; OGLUM11G03240.1; OGLUM11G03240. DR Gramene; OGLUM11G03240.1; OGLUM11G03240.1; OGLUM11G03240. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000026961; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 31642 MW; 58025371C8CA4962 CRC64; MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD VVHFERVRGS FGVGDRLFIG CRRRGDAAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS TSGGGSYPTS PANSYAYRRA ADHDHGDMHH ADESPRDTDS PSFSAGSAPS RRLRLFGVNL DCGPEPEADT TAAATMYGYM HQQSSYAAMS AVPRAIHKKI DYEI // ID A0A0E0BJL4_9ORYZ Unreviewed; 851 AA. AC A0A0E0BJL4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM11G14710.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM11G14710.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM11G14710.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM11G14710.1; OGLUM11G14710.1; OGLUM11G14710. DR Gramene; OGLUM11G14710.1; OGLUM11G14710.1; OGLUM11G14710. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026961; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 723 807 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 93791 MW; EA5AE1E038A18EB6 CRC64; MATAEVGGGG GEGDAAAAAV ARAGGGGGGG GGEDALFTEL WSACAGPLVT VPRVGEKVFY FPQGHIEQVE ASTNQVGEQR MQLYNLPWKI LCEVMNVELK AEPDTDEVYA QLTLLPESKQ QEDNGSTEEE VPSAPAAGHV RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRAMR QQTNVPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPAEFVVPY DRYMESLKRN YSIGMRFKMR FEGEEAPEQR FTGTIVGMGD SDPAGWPESK WRSLKVRWDE ASSIPRPERV SPWQIEPAVS PPPVNPLPVP RTKRLRPNAT ALPADSSAIA KEAATKVVVE SEPNGTQRTF QTQENATPKS GFSNSSELES AQKSIMCPSG FDREKNNTPI QWKLGSDGRM QMSKPESYSE MLSGFQPPKD VQTPQGFCSL PEQITAGHSN FWHTVNAQYQ DQQSNHNMFP SSWSFMPPNT RLGLNKQNYS MIQEAGVLSQ RPGNTKFGNG VYAALPGRGT EKYSGGWFGH MIPNSHMDDT QPRLIKPKPL VVAHGDVQKA KGASCKLFGI HLDSPAKSEP LKSPSSVVYD GTPQTPGATE WCRPDVTEVE KCSDPSKAMK PLDTPQPDSV PEKPSSQQAS RNMSCKSQGV STRSCKKVHK QGIALGRSVD LTKFNGYEEL IAELDDMFDF NGELKGPKKE WMVVYTDNEG DMMLVGDDPW IEFCDMVHKI FIYTREEVQR MNPGTLNSRS EDSHANSMER GSVGREMRGC LSTSSLNSEN C // ID A0A0E0BP86_9ORYZ Unreviewed; 273 AA. AC A0A0E0BP86; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM12G04180.1}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM12G04180.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM12G04180.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM12G04180.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM12G04180.1; OGLUM12G04180.1; OGLUM12G04180. DR Gramene; OGLUM12G04180.1; OGLUM12G04180.1; OGLUM12G04180. DR Proteomes; UP000026961; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 30412 MW; F0848D2B5F3F62AE CRC64; MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV HFERVRGLGA ADRLFIGCRR RGESASAPPP AVRVTPPPPA LNGGEQQPWS PMCYSTSGSS YDPTSPANSY AYHRSVDQDH SDILHAGESQ RDADAKSSSA ASAPPPSRRL RLFGVNLDCG PEPEADQATA MYGYMHHQSP YAAVSTVPNY WGS // ID A0A0E0BP87_9ORYZ Unreviewed; 309 AA. AC A0A0E0BP87; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OGLUM12G04180.2}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM12G04180.2, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM12G04180.2, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM12G04180.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM12G04180.2; OGLUM12G04180.2; OGLUM12G04180. DR Gramene; OGLUM12G04180.2; OGLUM12G04180.2; OGLUM12G04180. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000026961; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 34653 MW; 938C7213549A998B CRC64; MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV HFERVRGLGA ADRLFIGCRR RGESASAPPP AVRVTPPPPA LNGGEQQPWS PMCYSTSGSS YDPTSPANSY AYHRSVDQDH SDILHAGESQ RDADAKSSSA ASAPPPSRRL RLFGVNLDCG PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSGQLVDEMM RRSEAFACRI LTTNSETSYY YHQPTTTTL // ID A0A0E0BSP8_9ORYZ Unreviewed; 895 AA. AC A0A0E0BSP8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM12G13560.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM12G13560.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM12G13560.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM12G13560.1; OGLUM12G13560.1; OGLUM12G13560. DR Gramene; OGLUM12G13560.1; OGLUM12G13560.1; OGLUM12G13560. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026961; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 712 796 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 895 AA; 98572 MW; E27F16E68C00BCCD CRC64; MAAAATAAAS PVEGLTGGGG GGGGGVDGLF VELWRACAGP LVTVPAVGER VFYLPQGHIE QVEASTNQVA EQQGAPLYNL PWKIPCKVMN VELKAEPDTD EVYAQLTLLP EKQQDGNGSG NGYVSKDKVE EEVVPPAATE RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRAMR QQANIPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPSEFVVPR DLYEESLKRN HSIGMRFKMT FEGEEAAEQR FTGTIVGVGD SDPSGWADSK WRSLKVRWDE AASVPRPDRV SPWQIEPANS PSPVNPLPAP RTKRARPNVL ASSPDLSAVN KEVASKVMAN SQQNGLPRAF HSQENMNLRS RFGDSNELNT SQKLTMWSSG SNQEKNNVSV QRELGSQSWM QMRRPDGSSE ILSGFQPLKD TRNPLSSFPS QISGNRSNTW NTINVHYPDQ NANHNMYPGT WSLMPPNTGF GVNQQNYLMT PDITLPQRSL NAKFGGNGAF TSLRAHGIDQ RSSGWLGHIE PSSHIDDASS SLIKPQPLVI DHNVQKAKGS SCMLFGISLD SPAKPELLIS PPSVAFDGKL QQDALDEDEC SDPSKTVKPL DGAQHDSATE KHQSCPDGTK NIQSKQQNGS SRSCKKVHKQ GIALGRSIDL TKFTCYDELI AELDQMFDFN GELNSSSKNW MVVYTDNEGD MMLVGDDPWN EFCNMVHKIF IYTREEVQKM NPGALNSRSF VVCKNRRRHI HGRKESFRGV VVVAGALYVS GKPRSTPFVD GACPGISCPL FVFDKFWVCF VEVLSYCMIC PVVVKGAEAK LPRPY // ID A0A0E0BV61_9ORYZ Unreviewed; 962 AA. AC A0A0E0BV61; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glumipatula. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM12G20370.1, ECO:0000313|Proteomes:UP000026961}; RN [1] {ECO:0000313|EnsemblPlants:OGLUM12G20370.1, ECO:0000313|Proteomes:UP000026961} RP NUCLEOTIDE SEQUENCE. RA Wing R.A., Panaud O., Oliveira A.C.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OGLUM12G20370.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OGLUM12G20370.1; OGLUM12G20370.1; OGLUM12G20370. DR Gramene; OGLUM12G20370.1; OGLUM12G20370.1; OGLUM12G20370. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026961; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026961}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026961}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 962 AA; 106996 MW; 861AE6BD01E09656 CRC64; MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSYWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRYG DPSKQHPATL QYQQTHNLNS GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE LQQQQRQHVL QEQSNQEMQQ QLPSSDHRVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG NSDPPLHLHN NFHNFSNQEA SNLLSLPRSS QLMASDGWPS KRLALESAVH PEAPSMHPKI EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASRNSQLQQ RRRRDGTAPV SRMRSTWRAS RAACRLRRAS TLACFPSALW LNADSLLLSF CFALAFICSA CT // ID A0A0E0JDV1_ORYPU Unreviewed; 300 AA. AC A0A0E0JDV1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G02240.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G02240.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G02240.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G02240.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G02240.1; OPUNC01G02240.1; OPUNC01G02240. DR Gramene; OPUNC01G02240.1; OPUNC01G02240.1; OPUNC01G02240. DR OMA; MERNKAT; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 102 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 159 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 102 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 159 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 33406 MW; 7D2F5781FA7E1376 CRC64; MEQEGMVFSC NSGGSSSTID SKQEEELAAM EEDEFHQAAE LRRPSSRYKG VVPQPNGRWG AQIYERHSRV WLGTFPDEEA AARAYDVAAL RFRGREAVTN RAAAADGASA GELAFLAAHS KAEVVDMLRK HTYDDELQQG LRRGSRAQPT PRWARQPLFE KAVTPSDVGK LNRLVVPKQQ AEKHFPFPLR RSTDAGGKGV LLNFEDGDGK VWRFRYSYWN SSQSYVLTKG WSRFVREKGL RPGDTVAFSQ SAAAWGTEKH LLIDCKKMER NKATDAIAAI AADDARVVKL FGVDIAGDKR // ID A0A0E0JDV4_ORYPU Unreviewed; 339 AA. AC A0A0E0JDV4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G02270.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G02270.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G02270.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G02270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G02270.1; OPUNC01G02270.1; OPUNC01G02270. DR Gramene; OPUNC01G02270.1; OPUNC01G02270.1; OPUNC01G02270. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 36388 MW; 0659170CD04829F1 CRC64; MGVEAVSFSS TSSGASTATT ESGGAVQMSP EPVVAVAAHL PVVEVDEVVT SKPAAVQQSS RYKGVVPQPN GRWGAQIYER HARVWLGTFP DEEAAARAYD VAALRYRGRD AATNFPGAAA SAAELAFLAA HSKAEIVDML RKHTYADELR QGLRRGRGMG ARAQPTPSWA REPLFEKAVT PSDVGKLNRL VVPKQHAEKH FPLSGAPTPP PPPPPRPPAR ACSSTSRTAR GSSQSYVLTK GWSRFVREKG LRAGDTIVFS RSAYGPDKLL FIDCKKNNTA AAAEKPTSEA RVVRLFGVDI AGGDCRKRER AVEMGQEAFL VKRQCVVHQR TPALGALLL // ID A0A0E0JG22_ORYPU Unreviewed; 495 AA. AC A0A0E0JG22; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G08290.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G08290.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G08290.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G08290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G08290.1; OPUNC01G08290.1; OPUNC01G08290. DR Gramene; OPUNC01G08290.1; OPUNC01G08290.1; OPUNC01G08290. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 163 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 495 AA; 55180 MW; 97A157868DCC71A0 CRC64; MAMDPPIKAS SFSPSFSAAP NPKRGRPPGS KPAKSKMEQK MELVHQRLAL LDSSSGSDRE DDLELRAIVI DCDDDMDDVV EVVPLKILRP KEVDSEQRMV PAVPQTCQNT SNGRTNTTKV PTKGQNKCAS YLPKKSSVQE FCGSAMERAQ EIQTKLQAEH PSFVKYMLHS HVVSGFWLGL PAGFCNKHLP KHDTEIILED ENGSNHKTNY LGGKQGLSAG WRGFAINHNI KVGDVVVHIV RENNISTTDG APGLVSFDAC KKRKISKEAT DNATKPKEDP KTTRVSSKVA HDDTQNLVCE TIDGIRFSDL EMSFDNVMSF SNFNIIVDGL IIDCKFPDHQ RRTYYELCCA QKSFLHNHLL RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFELLGM NVAFLLKRVD DLLSLPDQRM DLSECGKYNE LKLEQSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV RNHDIALRKI ATAPW // ID A0A0E0JG44_ORYPU Unreviewed; 637 AA. AC A0A0E0JG44; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G08500.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G08500.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G08500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G08500.1; OPUNC01G08500.1; OPUNC01G08500. DR Gramene; OPUNC01G08500.1; OPUNC01G08500.1; OPUNC01G08500. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 533 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 60 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 637 AA; 70886 MW; A6C391A98E535D6A CRC64; MFQVPYKILC KVVNVELKAE TETDEVFAQI TLQPDPDQEN LPTLPDPPLP EQPRPVVHSF CKILTPSDTS THGGFSVLRR HANECLPPLD MSMATPTQEL ITKDLHGSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLIS GDAFVYLRSE TGEQRVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAI KTNSIFLVYY RPRLSQSQYI VSVNKYLAAS KVGFNVGMRF KMSFEGEDVP VKKFSGTIVG EGDLSLQWSG SEWKSLKVQW DEVTNVNGPE RVSPWEIETC DGTAPTINVP LQSATKNKRP REPSETLDLQ SLEPAQEFWL SGMPQQHEKT GIGSSEPNCI SGHQVVWPGE HPGYGAVSSS SVCQNPLVLE SWLKDFNSSS KGVSPTLSEI SQKLFQVTSN EARIVTWPAR SAYQAEEPTS KLSSNTAVCG YRTEEVTPNA SKVVEGKKEP GMFRLFGVDL MKCTSISTTT DKSNVGAGET SAKGTGSHED SGQLSAFSKV TKEHIGADES PREIQSHQNY TGRTRIKVQM HGNAVGRAVD LANLDGYEQL MNELEEMFNI NDLKQKWKVA FTDDEGDTME VGDDPWLEFC QMVRKIVLYP IEDEKKIEPH PKLLSSANPE QDQKTEF // ID A0A0E0JM84_ORYPU Unreviewed; 720 AA. AC A0A0E0JM84; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G25930.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G25930.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G25930.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G25930.1; OPUNC01G25930.1; OPUNC01G25930. DR Gramene; OPUNC01G25930.1; OPUNC01G25930.1; OPUNC01G25930. DR OMA; READPMW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 720 AA; 78804 MW; 7652B107E29FA434 CRC64; MVGIDLNTVE EEEDEEEGGA TGTVTAPAPS RAGGAVCLEL WHACAGPVAP LPRKGSAVVY LPQGHLEHLG AAPGPGAAAV AAVPPHVFCR VVDVSLHADA ATDEVYAQVS LVADNEEAER RMREGENGAA CDGEGEDVMK RPARIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SLQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSG FINKKKLVSG DAVLFLRGED GELRLGVRRA AQLKNVSPFP ALHNQISNTS SLSEVAHAVA VKSIFHIYYN PRLSQSEFII PYWKFMRSFS QPFSVGMRFK LRYESEDASE RRRTGIIIGS READPMWHGS KWKCLVVKWD DDVECRRPNG VSPWEIELSG SVSGSHLSTP HSKRLKSCFT QVNPDIVLPN GSVSSDFAES ARFHKVLQGQ ELLGLKTRDG TVNTASQATE ARNFQYTDER SCSINMSNNI LGVPRLGVKT PSGNPGFSYH CSGFGESQRF QEVLQGQEVF RPYRGGTLSD ACLRGSGFRQ PDGNHVSGAA FKWLAPQGCD HHGITTSVLP QASSPSSVLM FPQTSSKMPG LEYIYGCLDR NESNRHFKVG PTQDMARTDQ TLRLWPHLIS GKVLDECTRN EKLHSPVGGA EHESNNKCLN TNGCKIFGIS LTDKAQAGDE VDCGNASYHS RFQSLKPQMP KSLGSSCATV HEQRPVVGRV VDISAVNTMI // ID A0A0E0JMB3_ORYPU Unreviewed; 322 AA. AC A0A0E0JMB3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G26150.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G26150.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G26150.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G26150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G26150.1; OPUNC01G26150.1; OPUNC01G26150. DR Gramene; OPUNC01G26150.1; OPUNC01G26150.1; OPUNC01G26150. DR OrthoDB; EOG09360BW5; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 322 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5002364106. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 322 AA; 36947 MW; 1ED9A15B7E12924A CRC64; MLNYVTPLLL PLTFTYLAVM DSPRYSMIKL NTTNQDYLHV PRTITQACQL KDGQTISLMT AHGLKIRIKI REISNKLYMR RGWKEFIQAT GLKMGESVVF KTSSKSKSHV IVLNKQGLSR CPVPYKSSSS HNKNQSSSVA NLSVNRNTPH HMHYNTTEGK SHKAKSHVKQ HIQVNLKHHI ASTSTVKMSR TIKDMCYCNK GITLSTELKN YIKDIAQFLH HSSKFYIVAI NQTFMKQDRV YFAKEFSKKY IQPLAQRKTV DIQVQIADNP STSMILQKST DQRYNLKRGW SDFAIANKIQ VGTICIFHFY RANQLQATVD VI // ID A0A0E0JMB4_ORYPU Unreviewed; 291 AA. AC A0A0E0JMB4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G26150.2}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G26150.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G26150.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G26150.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G26150.2; OPUNC01G26150.2; OPUNC01G26150. DR Gramene; OPUNC01G26150.2; OPUNC01G26150.2; OPUNC01G26150. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 33248 MW; F8566355FB55FE6E CRC64; MDSPRYSMIK LNTTNQDYLH VPRTITQACQ LKDGQTISLM TAHGLKIRIK IREISNKLYM RRGWKEFIQA TGLKMGESVV FKTSSKSKSH VIVLNKQGLS RCPVPYKSSS SHNKNQSSSV ANLSVNRNTP HHMHYNTTEG KSHKAKSHVK QHIQVNLKHH IASTSTVKMS RTIKDMCYCN KGITLSTELK NYIKDIAQFL HHSSKFYIVA INQTFMKQDR VPLAQRKTVD IQVQIADNPS TSMILQKSTD QRYNLKRGWS DFAIANKIQV GTICIFHFYR ANQLQATVDV I // ID A0A0E0JMB5_ORYPU Unreviewed; 303 AA. AC A0A0E0JMB5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G26150.3}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G26150.3, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G26150.3, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G26150.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G26150.3; OPUNC01G26150.3; OPUNC01G26150. DR Gramene; OPUNC01G26150.3; OPUNC01G26150.3; OPUNC01G26150. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 34782 MW; 714631F01E4725BF CRC64; MDSPRYSMIK LNTTNQDYLH VPRTITQACQ LKDGQTISLM TAHGLKIRIK IREISNKLYM RRGWKEFIQA TGLKMGESVV FKTSSKSKSH VIVLNKQGLS RCPVPYKSSS SHNKNQSSSV ANLSVNRNTP HHMHYNTTEG KSHKAKSHVK QHIQVNLKHH IASTSTVKMS RTIKDMCYCN KGITLSTELK NYIKDIAQFL HHSSKFYIVA INQTFMKQDR VYFAKEFSKK YIQPLAQRKT VDIQVQIADN PSTSMILQKS TDQRYNLKRG WSDFAIANKI QVGTICIFHF YRANQLQATV DVI // ID A0A0E0JMR4_ORYPU Unreviewed; 389 AA. AC A0A0E0JMR4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G27280.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G27280.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G27280.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G27280.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G27280.1; OPUNC01G27280.1; OPUNC01G27280. DR Gramene; OPUNC01G27280.1; OPUNC01G27280.1; OPUNC01G27280. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 131 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 211 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 131 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 211 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 389 AA; 40999 MW; 99DCE5D7237931B6 CRC64; MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG RVCGGAGAGG KLPSSKFKGV VPQPNGRWGA QIYERHQRVW LGTFAGEDDA ARAYDVAAQR FRGRDAVTNF RPLAEADPEA AAELRFLATR SKAEVVDMLR KHTYFDELAQ SKRAFAASTP SASPNTASLP NGHLSSPRSP SAPAAARDHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPSAGGESKG VLLNFEDAAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDVVGFY RSAASAGDDG KLFIDCKLVR STGAALASPA DQPAASPVKA VRLFGVDLLM APAPAEQMAG CKRARDLAAT TPPQAAAFKK QCVELAAWH // ID A0A0E0JN70_ORYPU Unreviewed; 394 AA. AC A0A0E0JN70; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G28450.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G28450.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G28450.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G28450.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G28450.1; OPUNC01G28450.1; OPUNC01G28450. DR Gramene; OPUNC01G28450.1; OPUNC01G28450.1; OPUNC01G28450. DR OMA; SMDMANP; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 173 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 394 AA; 42710 MW; 9707EFA0E302AE87 CRC64; MRGEEKWQEQ PAPASHPSRA TSRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS ASLPVLPPIK DQGARPPTLA ASAAAAFSPP PLPFPPSAST STSAARPTDM AGVTSKRRSS SASTSSSSGD GDRPRGVTRK RRSGGRCPRP AASLRPAAPR PSSHHTAGLR IILQKELRYS DVSQLGRIVL PKKEAEAYLP ILTSKDGKKS LCMHDLQNAQ LWTFKYRYWP NNKSRMYVLE NTGDYVRTHD LQLGDSIVIY KDDENNRFVI GAKKAGDQQA ATVPQVDEHI STLFPIFPIA QVDDYLSPMA PQVDISAFVP HADENHEIFD GILNSLPEIP VANVRYSDFF DPFDDGMDMA NTLNANANQS ASLHVTDDKS GHSLIPNPKS GPHM // ID A0A0E0JNF8_ORYPU Unreviewed; 411 AA. AC A0A0E0JNF8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G29180.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G29180.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G29180.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G29180.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G29180.1; OPUNC01G29180.1; OPUNC01G29180. DR Gramene; OPUNC01G29180.1; OPUNC01G29180.1; OPUNC01G29180. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 45777 MW; F6FB3C8F48BF13C3 CRC64; MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKSLKEASMA ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALRDL EFVVFRYDGN TRFTAMVFDR TACEREDLMG GGGGGDRPRK KGGRPRTAAS RDAARPKKDS VGKELVTYHA SPSGQPLQIA GSNWTPEPGT TVVKNEEDTD DADELPVCAL PAPPAPASRQ RVSPPRHVPE GALDADGGAA RRGAAKTRSL QDDLALSSIP PSIRRYKGYV SRRRPVTTAE RQRATEIAHA FRSPLPYCVI RMSTMHVYYS FMMRFPTGFS RQHLPRERTD VLLRDPVGKV WSVLYIPNTR DRLSRGWCAF ARGNCLEEGD YCVFELVAAA EFRVHVFRVV EPAVPAVRLR RVTVTCGRGP T // ID A0A0E0JNG0_ORYPU Unreviewed; 700 AA. AC A0A0E0JNG0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G29200.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G29200.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G29200.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G29200.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G29200.1; OPUNC01G29200.1; OPUNC01G29200. DR Gramene; OPUNC01G29200.1; OPUNC01G29200.1; OPUNC01G29200. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 591 632 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 700 AA; 80278 MW; 2A40FED7C19A114A CRC64; MEEEVRRHHH FIKVMVGEFA RRLEIPQGFL IHIPEVAHST SDASLPSSAK GTIQNSEGKT WPVELEKLDD HVFLTTGWAK FVEDNSLREY EFLLFRYDEN MHFMVLPFGL NACEKVIRSS RSPQGKLPCD IFCCTKRARD GDRLTEAANS LTPSHSQVVT LQRTTQGHEL ISSQSFPDQH ELCGSKDGLD EHISLKGPMD DGKANAIAEV MSTLDVDKVT VELFCAMLVF YKWNVDAVAE DFDICRGKPQ IQNLFLKHKL LFQFDIVKRK LRSFFLPDDY CSSPILESRK CSLEEPKLSN QPQQCDLTTE KCSLVDEHDL RIFSQKKRRK RGSFCSPETP RRSPRLACQN NAHDNTEKTL KERSEEQQPS PASTIDQAES RAEQACLCHD KTDNGSLFQD SKKVKPAHGE VDLCEEQTER NAVETSESFT RRDCIESLPA SCEVPARLRI NELCLTRKPA EHVNPLEKVL LDIQRGNFMK TISHVQGIIR NHPSDLLTAD IITVVVQKEI LKWDYCIKDM DAQRIVNALL EHAKKIKEMH NFNSEVRKEE FSAKLKVHLK WQLKEVETAY TSLELDYKKA TSDDNIAFSM LHEQKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAQQVAEHE SVFQKSLMER LRIKEVMKSY EQTLAEVKIQ LTSTEVGSID VEALVKAEMD NMTKEIELSK ESLLNITFKQ // ID A0A0E0JNT5_ORYPU Unreviewed; 652 AA. AC A0A0E0JNT5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G30260.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G30260.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G30260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G30260.1; OPUNC01G30260.1; OPUNC01G30260. DR Gramene; OPUNC01G30260.1; OPUNC01G30260.1; OPUNC01G30260. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 191 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 191 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 652 AA; 71198 MW; E94B587F7BCAA9CE CRC64; MASSASSSSS PSSRPPLMAL PSFYRPPWPS ERGGEQRATD CWAGSPAAGG GRARVTTMGI DLNNTASGGE EDAPAPAPVC RELWHACAGP VVSLPRRGSV VVYLPQGHLA AAGAGGGIRG EVAVALPPHV ACRVVDVELC ADAATDEVYA RLALVAECEV FERNLHGGGI EREDDMEDGD EERKSRMLHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DHKQLRPSQE LVAKDLHGAK WRFRHIYRGQ PRRHLLTTGW SSFVNKKKLV LGDAVLFLRG DDGELRLGVR RATQLKNEAI FKAFSSESSK MRTLSAVADS LKHGSVFHIS YNPRATASEF VVPYWKFVKS FSHPVCIGMR FKFHFESEDV NERRAGMIAG VSEVDPIRWP GSKWRSLMVQ WEDATDCNSQ NRVSPWEIEI VGGSVSVAHS LSASSSKRTK LCPQGNLDVP ALYGNGRPDS VETEKFPRVL QGQELMGSRT HRVTCSPQSI NITKTKSRYE LKNYVCTPAT MNGLSSANEG YYLSLSTVPP SPPSRLMLYQ TGVPQLELTT KNNEKSGNDS HPALPQHKLP GETSWDQFKI GKASTPGNTA NSGNDGREVG RTSCRLFGFS LTEKIIPTDE GGEKEGGYET DCQNPRMLDL FGYNCTTPVI QT // ID A0A0E0JNT6_ORYPU Unreviewed; 722 AA. AC A0A0E0JNT6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G30260.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G30260.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G30260.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G30260.2; OPUNC01G30260.2; OPUNC01G30260. DR Gramene; OPUNC01G30260.2; OPUNC01G30260.2; OPUNC01G30260. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 191 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 191 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 722 AA; 78830 MW; FACA860404F314D7 CRC64; MASSASSSSS PSSRPPLMAL PSFYRPPWPS ERGGEQRATD CWAGSPAAGG GRARVTTMGI DLNNTASGGE EDAPAPAPVC RELWHACAGP VVSLPRRGSV VVYLPQGHLA AAGAGGGIRG EVAVALPPHV ACRVVDVELC ADAATDEVYA RLALVAECEV FERNLHGGGI EREDDMEDGD EERKSRMLHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DHKQLRPSQE LVAKDLHGAK WRFRHIYRGQ PRRHLLTTGW SSFVNKKKLV LGDAVLFLRG DDGELRLGVR RATQLKNEAI FKAFSSESSK MRTLSAVADS LKHGSVFHIS YNPRATASEF VVPYWKFVKS FSHPVCIGMR FKFHFESEDV NERRAGMIAG VSEVDPIRWP GSKWRSLMVQ WEDATDCNSQ NRVSPWEIEI VGGSVSVAHS LSASSSKRTK LCPQGNLDVP ALYGNGRPDS VETEKFPRVL QGQELMGSRT HRVTCSPQSI NITKSKSFDA WRFLTDTRSC MLGSSTSRLP VQYSGYTHQS VSFGESIGFP EVLQGQEISQ TVPPFQGMLP DACSAKSRYE LKNYVCTPAT MNGLSSANEG YYLSLSTVPP SPPSRLMLYQ TGVPQLELTT KNNEKSGNDS HPALPQHKLP GETSWDQFKI GKASTPGNTA NSGNDGREVG RTSCRLFGFS LTEKIIPTDE GGEKEGGYET DCQNPRMLDL FGYNCTTPVI QT // ID A0A0E0JSF7_ORYPU Unreviewed; 679 AA. AC A0A0E0JSF7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC01G39820.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G39820.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G39820.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G39820.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G39820.1; OPUNC01G39820.1; OPUNC01G39820. DR Gramene; OPUNC01G39820.1; OPUNC01G39820.1; OPUNC01G39820. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 78 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 678 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 78 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 583 678 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 679 AA; 75719 MW; 922ED9DC8429B779 CRC64; MVELIKVPKI EQEEGNADNH GEEKADVHEE KTEKVKRRRK RVSDPQRKKA CVDCTKRCIR VHGMASSSSE KARPIPTLPS FFKIMVGYFS ENMDIPHPFA RTITDLTGSN VYLEDAYGLR WRVRLYLHDG ALSFGHGWKN FVLDHDISVG EFLVFRQIAR SVFTVQIFAI SACERIHLCE RNKRQSRKRK PGRKTGYPAN NQMVKISSKD VVKRRKKQRT DEQRYDLDPR QHCMPVHVCI DSDSELKCSE SSVKELDVAA ADESHAVVPV PTTESNADPS YNAAGMKTTK KLDAIGASSN TKDMTGDADK SEDYPSFSYL DSSNVMAANK QSAHSHQDRP IQLYCELGLE DGNAEADNCE NSTMLENAEL RTPLAMMDLN EVSIDDIFLS ADIYEFDSDF CSPEAFSVEL NTEVLVANGR TPGDCFGMPE TSTCLENRQM SDLPRTSADA GCVAVHGIDI NALPSKELSG IGQDNTCTEI GEAHDDCKEG KDIMHSEGNK IAQKGSVSAH SSAKQDIIQE GPRQIAAETM SRSPKPCELT YARKNSVQPG FLTSVRQYAG NNSKVQESGS TKSCVVLAVA ANNKKFCITV PPPDQTWLEL PRRLPVLPRT KKQARKILIL KDPCMRLWPV LYQCTPKFNG FIAGWADISR ENNLREGDTC EFELCSNSEL SFQVLPNLQ // ID A0A0E0JT39_ORYPU Unreviewed; 758 AA. AC A0A0E0JT39; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC01G41560.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC01G41560.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC01G41560.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC01G41560.1; OPUNC01G41560.1; OPUNC01G41560. DR Gramene; OPUNC01G41560.1; OPUNC01G41560.1; OPUNC01G41560. DR OMA; HESAYTD; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026962; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 758 AA; 85046 MW; 7C0C042478492D1E CRC64; MPPAAMAPPP PPHGSSTGDP LYDELWHACA GPLVTVPRIG DLVFYFPQGH IEQVEASMNQ VANNQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVAMRFR MRFEGEEAPE QRFTGTIIGS ENLDPLWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDVD SAQAQRSQNS TVLQGQEQMT LRNNLTESND SDVTAHKALM WTPSPNAAKA HPLSFQQRPP MDSWMQLGRR ETDFKDARSG AQSFGDSQSF FMQNFDEAQN RLTSFKNQFQ DQGSARHFSD PYFFVPPQPS LTVESSTQMH TDSKELHFWN GQSTVYGNSR DQPQNFRFEQ NSSGWLNQSF ARPEQPRVIR PHASIAPVEL EKTGEGSGFK IFGFKVDTTN APNNHLSSPM AATHEPMLQT PSLNQLQPAQ TDCIPEVSVS TAGTATENEK SAQQAQQSSK DVQSKSQVAS TRSCTKVHKQ GVALGRSVDL SKEFCSIVRK IYIYTKEEVQ KMNSKSNAPK REDSAENEKG SVKRRYKR // ID A0A0E0JVE0_ORYPU Unreviewed; 1101 AA. AC A0A0E0JVE0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G02660.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G02660.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G02660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G02660.1; OPUNC02G02660.1; OPUNC02G02660. DR Gramene; OPUNC02G02660.1; OPUNC02G02660.1; OPUNC02G02660. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 968 1052 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 555 586 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1101 AA; 122359 MW; 80BC3912132AD983 CRC64; MASMKQQTPA SSAVTAAASS SAVAACEGER KAAAINSELW HACAGPLVSL PPVGSLVVYF PQGHSEQADP DTDEVYAQMT LQPVNTYGKE ALQLSELALK QARPQMEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIVVRDEK HQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHAAA NSSPFTIFYN PRASPTEFVI PFAKYQKALY SNQISLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFLCPQ PFFGVKRPRQ LDDESEMENL FKRAMPWLGE EVCIKDAQNQ NSTAPGLSLV QWMNMNRQQS SSLANTATQS EYLQALGNPS MQNLAADELA RQLYVQNNLL QQNCIQFNSP KLPQQMQTMN DLSKAAIPLN QLGAIINPQD QKQDAVNHQR QQNSIQVIPL SQAQSNLVQA QVIVQNQMQQ QKPSPTQNPQ RINSQQLLLS HQQQDQNLQL QQQLLLQQKQ QLQQQQQQQN QQQLNKSLGQ LVNLASQQSK LFDEELQLQI LQKLQQQSLM SQSTSTLSQP PLIQEQQKLI MDMQKQLSNS HSLAQQQMMP QQEIKPSLQA TPLLPTVQQE QQQKLLQKQI SLADVSGVAF QPISSTNVIP KTGGAMIVSG ATQSVVTEEM PSCSTSPSTA NGNHLAQSTK NRHCINTERL PPSTAPMLIP TSVDAVTATP LMTKELPKPN NNVKQSVVNS KLPNVAPGPQ NCMNNALQTD NLETSSSATS LCPSRTDGLV HQGFPSSNFN QHQMFKDALP DVEIEGVDPS NSGLFGINND NPLGFPIETE DLLINALDSV KYQNHISTDV ENNYPMQKDA LQEISTSMVS QSFGQSDMAF NSIDSAINDG AFLNKNSWPA APPLQRMRTF TKVYKRGAVG RSIDIGRYSG YEELKHALAR MFGIEGQLED RQRIGWKLVY KDHEDDILLL GDDPWEEFVN CVRCIRILSP QEVQQMSLDG DLGSNVLPNQ ACSSSDGVNG WRPRCDQNSG NPSIAPYDQF E // ID A0A0E0JVX6_ORYPU Unreviewed; 911 AA. AC A0A0E0JVX6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G04120.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G04120.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G04120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G04120.1; OPUNC02G04120.1; OPUNC02G04120. DR EnsemblPlants; OPUNC02G04120.2; OPUNC02G04120.2; OPUNC02G04120. DR Gramene; OPUNC02G04120.1; OPUNC02G04120.1; OPUNC02G04120. DR Gramene; OPUNC02G04120.2; OPUNC02G04120.2; OPUNC02G04120. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 780 864 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100837 MW; 026291C21422F54E CRC64; MKLSPSAGGG GSGSVSDQPA SPPEVAEEQK CLNSELWHAC AGPLVSLPAV GSRVVYFPQG HSEQVAASTN KEMESQIPNY PNLPPQLICQ LHNVTMHADA ETDEVYAQMT LQPLSPQELK DPFLPAELGT ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELM AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDS NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWT NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP TGLPSLYGGK EDDLASSLMW LRDGQNTGFQ SLNFGGLGIS PWMQPRLDSS LLGLQPDMYQ TIAAAAALQS TTKQVSPAML QFQQPQNIVG RSSLLSSQIL QQAQPQFQQM YHQNINGNTI QGHSHPEYLQ QPLQHCQSFN EQKPQLQPQQ QQQESHQQQP QHQQMQQQKH LSNFQTVPNA LSVFSQLSST QSTPSTLQTV SPFSQQHNFP DTNISCLSPS NVSSMHDTLR PFPSEAASDL PGVPRITPVP VSDPWSSKRV AVESTISSRP HAISSQIENF DLTPSIPQNS TLAPLPGREC LVDQDGGSDP QNHFLFGVNI DSQSLLMQDG IPSLHNDNSS STIPYSTSNF LSPSQDDYPL NQTLTTPGSL DESEYVPCSD NADQVKRPPA TFVKVYKSGT VGRLLDITRF SSYHELRSEV GRLFGLEGQL DDPLRSGWQL VFVDREDDVL LVGDDPWQEF VNSVSCIKIL SPQEVQQMGK PGIELFSTSA RRLGNSCDNY MSRQESRSLS TGIASVGSVE F // ID A0A0E0JWV6_ORYPU Unreviewed; 285 AA. AC A0A0E0JWV6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC02G06600.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G06600.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G06600.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G06600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G06600.1; OPUNC02G06600.1; OPUNC02G06600. DR Gramene; OPUNC02G06600.1; OPUNC02G06600.1; OPUNC02G06600. DR OMA; CRRAYHD; -. DR OrthoDB; EOG09360KHU; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 174 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 174 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 31791 MW; 0775DCE3F0AA6A43 CRC64; MEEQMTNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEA EERELRDAKL RVAGAGRRRL WDVKVVDGDG DGDDDSGVYL GRGWMRFARA HGLRDGHLLV FRYDGASVFT VTVFDDGTMC RRAYHDAAGN ITSPASERVA RTDMTWLTCA GSGSSSDDDG EGGGDTAATS QFVVTLRQSN LGKKQAQYLN VPVEFQEAHG YAAREKVVLR MRGRSWTVRL KHTKGKRPRR ERTVLRYGWH RFCADNGLAV GDTCFFRELR SGDNDGDHVL SVTVHKADGG GNPLE // ID A0A0E0JZH1_ORYPU Unreviewed; 267 AA. AC A0A0E0JZH1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC02G13890.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G13890.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G13890.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G13890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G13890.1; OPUNC02G13890.1; OPUNC02G13890. DR Gramene; OPUNC02G13890.1; OPUNC02G13890.1; OPUNC02G13890. DR OMA; KRRTMKH; -. DR OrthoDB; EOG09360IMJ; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29675 MW; BA8FDB5EF36B747E CRC64; MAASLPLSAA VVRAEESVDM EVQEMEYLFE KFLMPSDLCR NTEWLGIPEE HVWKLGMMLE DRDGYSVIFF EDGVVPGKLW CFRYWKSNGV HSLTKGWGCF VREKGLKAGD TVSFFRGSSC GRLFICCRSG THATFKSSST LHHGFSMSPL PVRQLVGLES GMLARDVTSL GQARLHVGNQ VGGSAPARHV PSSRRRVEAQ PSRAPLHRRR TTTEHSVPDP MIEMPPILES MFLTAAPPAV KRLRLFGVNI YVLPLSSSGQ PKQESNP // ID A0A0E0JZH2_ORYPU Unreviewed; 255 AA. AC A0A0E0JZH2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC02G13900.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G13900.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G13900.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G13900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G13900.1; OPUNC02G13900.1; OPUNC02G13900. DR Gramene; OPUNC02G13900.1; OPUNC02G13900.1; OPUNC02G13900. DR OMA; PFSGHAT; -. DR OrthoDB; EOG09360KAP; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 255 AA; 28194 MW; D681545BEA1200BC CRC64; MAASPPLPTS IDGAQVLDDM EILKMKYLFG KVLMPSDVFW VTEQLVIPNE HVGKLLDMVV MNREGGFFVV VVEDGAVAGK LWLFRYWKRD NVHCLTKGWG CYVREKGLRA GDTVSFFHST TCSRFFICCK RTCSFLSPTT SHHGSSVPQP WAARAHHPFS GHATLCLGNK VSDSVPARHA TSLGCAAPTP RRRRRSVVHP EPPEQTTDGV PVILESMALV STPPAAKRVR LFGVYIDDIP PLRPGGEPKQ EFNDP // ID A0A0E0K153_ORYPU Unreviewed; 645 AA. AC A0A0E0K153; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G18520.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G18520.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G18520.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G18520.1; OPUNC02G18520.1; OPUNC02G18520. DR EnsemblPlants; OPUNC02G18520.2; OPUNC02G18520.2; OPUNC02G18520. DR Gramene; OPUNC02G18520.1; OPUNC02G18520.1; OPUNC02G18520. DR Gramene; OPUNC02G18520.2; OPUNC02G18520.2; OPUNC02G18520. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 518 611 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 645 AA; 71629 MW; 73D7E0ACBC673CA8 CRC64; MAGSVVAAAA AAAGGGTGSS CDALYRELWH ACAGPLVTVP RQGELVYYFP QGHMEQLEAS TDQQLDQHLP LFNLPSKILC KVVNVELRAE TDSDEVYAQI MLQPEADQNE LTSPKPEPHE PERCNVHSFC KTLTASDTST HGGFSVLRRH AEECLPPLDM TQNPPWQELV ARDLHGNEWH FRHIFRGQPR RHLLTTGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRL MRQLNNMPSS VISSHSMHLG VLATASHAIS TGTLFSVFYK PRTSQSEFVV SANKYLEAKN SKISVGMRFK MRFEGDEAPE RRFSGTIIGV GSMSTSPWAN SDWRSLKIEF HHGNWSHLLR AIHSHHLSHR QEISGLGLLL RIQLLQNYLR SSRTQELYPS SPNPIFSTSL NVGFSTKNEP SALTNKHFYW PMRETRADSY SASISKVPSE KKQEPSSAGC RLFGIEISSA VEATSPLPAV SGVGQDQPAA SVDAESDQLS QPSHANKSDA PAASSEPSPH ETQSRQVRSC TKVIMQGMAV GRAVDLTRLH GYDDLRCKLE EMFDIQGELS ASLKKWKVVY TDDEDDMMLV GDDPWPEFCS MVKRIYIYTY EEAKQLTPKS KLPIIGDTVK PNPNKQSTES DMPHSDLDST APVTD // ID A0A0E0K1Z4_ORYPU Unreviewed; 943 AA. AC A0A0E0K1Z4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC02G20840.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G20840.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G20840.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G20840.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G20840.1; OPUNC02G20840.1; OPUNC02G20840. DR Gramene; OPUNC02G20840.1; OPUNC02G20840.1; OPUNC02G20840. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 271 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 881 943 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 271 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 881 943 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 943 AA; 106001 MW; D1D6F2E6BA440457 CRC64; MDGAVQGQGC AGRLRSFEKM KKKNQNCSDD MRNGDDKEKK KNRKCSYDMK KSMRNDADEE KRKRKRSDDM KKNVRNDASK KEMPNGDWRK NRMAGSDAEQ RGKKMLNGDK KAKSRKVPTP FFEKLRKSQM LRMSSQNGEQ KMKSDGDSYK KTVPLSVNKG KMEKDGTDKR TLPNAPVAKE RKMRTSDSVE MKMKKKKQDA SFVHPDERTT QTFSTKNKEK KRKAPSTPLK REQKEREASS DNKKETKKAC IVAKGDEKKN CRDGKKKRKA SFAFFKFVRN EFEELLFIPP AVAPSFKDLI NCHVYLEDSE GKSSKIRLSV VDGSLAFYEG WNSFVSEHCI KWGDFLLFEY TPESTFSVRV FGMDSCERLH FNVESGGKGA VKKRKERHTL SDDLVPHYNG QYQDSEDIHD GPNVSGESPR SKEPKITVDT EICTSNLVAK SINAASETQD SERVESGIGY GSLGALDNKV RNLSNGECDT RSDSVLCIQK KTRRSEVIII SDEAYSTQVD EDTMEQRTPS EASETHHVTI NTQKDLERVA DGVWCESSVA LNNKMGNLIL GERKNKNVSP VCSTEKTNGS ETTPTTGAIP LTQENIDTVK LNTFSCLEED RSTTRESELA AAIPTTSETH DSDEDLGQKH QRNTVQVQSI IAVDKYSNDS EMNISGKVSR IYEAPAGTRC LEKWKKGIVS GRAALDYIGQ VRPEKTQKAG EKLVGNYGAM GENPVDLRLE SDVTGTCLKP ILNIPIEELA ILDSVSVSKC GRSRTEVNHL FNQKGATVQL QTKKEPLKPT GSSGNRQGNK IPVVNRVLTP QSDFQIPQQK NGNFTCCATP VSLLPAKAEL LELDDYSLQF CISSTIQKWI ELPKSLPITY RQKGRHDRNV VILKDPMKRL WPVFYHDKPI FVGFTAGWKT FATANNLQAG DVCKVVKELD EDEPAFQVHI TRK // ID A0A0E0K2M2_ORYPU Unreviewed; 691 AA. AC A0A0E0K2M2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G22610.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G22610.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G22610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G22610.1; OPUNC02G22610.1; OPUNC02G22610. DR Gramene; OPUNC02G22610.1; OPUNC02G22610.1; OPUNC02G22610. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 605 685 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 74767 MW; 5B030E3AE28CD735 CRC64; MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGTTV YYFPQGHAEH ALGLAAPELS AARVPALVPC RVAGVRYMAD PDTDEVFARI RLVPLRAAED GDVEDDGAAA GEEHEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW DQYGGLMRGN ASPCAVAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA HGHHPHHHYH HNHPSFFPFP DVSAPAGIQG ARHAQFCPSL SDLHLTHLQS SLMYPGLRRP DHVGPTPIPP PRISTDLTMG SSPPARALSM GAKKPDDAKP PGLMLFGQRI LTERQMSLSG SAGGTTSPAA TGNSSLNWNT EKGGANASEG SGSGVIQNSP TDNTSSERLQ WFRENSTVSE LGLEPGQCKV FIESDTVGRN LDLSSLSSFE QLYARLSEMF CIDSAELRSR VLYRGATGEV KHAGDEPFSE FIKLARRLTI LTDAGSDNLG S // ID A0A0E0K3N8_ORYPU Unreviewed; 413 AA. AC A0A0E0K3N8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC02G25780.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G25780.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G25780.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G25780.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC02G25780.1; OPUNC02G25780.1; OPUNC02G25780. DR Gramene; OPUNC02G25780.1; OPUNC02G25780.1; OPUNC02G25780. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026962; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 97 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 97 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 44058 MW; C87D2F5931EF5DA2 CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASVS ASGSSTPFRS DDGAGASGSG GGGGGGEAEV VEKEHMFDKV VTPSDVGKLN RLVIPKQYAE KYFPLDAAAN EKGLLLNFED RAGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFSRGVGDEA ARHRLFIDWK RRADTRDTLR LPRGLPLPMP LTSHYAPWGL GGGGGFFVPP SPPATLYEHR LRQGLDFRAF NPAAPMGRQV LLFGSARIPP QAPLLARAAP SPLHHHYTLQ PSGDGVRAEG SSVVLDSVPV IESPTTAAKR VRLFGVNLDN PHGGGGAAAA AGESSNHGNA LSLQTPAWMR RDPTLRLLEL PPHHHGAESS AASSPSSSSS SKRDAHSALD LDL // ID A0A0E0K822_ORYPU Unreviewed; 312 AA. AC A0A0E0K822; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G01540.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G01540.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G01540.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G01540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G01540.1; OPUNC03G01540.1; OPUNC03G01540. DR Gramene; OPUNC03G01540.1; OPUNC03G01540.1; OPUNC03G01540. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 34296 MW; E4ACCD010C3823D4 CRC64; MEFITPIVRP SVAVGGGELQ ESGRSLPAEA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFQLPSS IPFAPWPAHH HHGATGAGAR FLLPPSTPIY DHNRRHAHAV GYDAYAAATS RQVLFYRPLP QQQQQQHPAV VLESVPVRMT AGHAEPSVAS SAPSKRVRLF GVNLDCANSE QDHAGVVGKT APPPQSLQQL PSPPSSSSSS SGKARCSLNL DL // ID A0A0E0K9S4_ORYPU Unreviewed; 229 AA. AC A0A0E0K9S4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G06010.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G06010.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G06010.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G06010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G06010.1; OPUNC03G06010.1; OPUNC03G06010. DR Gramene; OPUNC03G06010.1; OPUNC03G06010.1; OPUNC03G06010. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 146 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 229 AA; 25508 MW; 20797201CBB8C2B3 CRC64; MGMEKGMTAY EAARERTVEE NKRKMEALNL RHLSAAITVA PKTPSPMKQK RRRIIEAAVV APSPPRRSRR LANLPEVKYA EVAPDGAERM KRSPRKAIDS IYLATRGSIS MEARLEAARK AEELESQLDP GFPSFVKPML HSHVGLPRHF CETYLPKHDA IVTLLDEKDE EFSTNYLAYK NGLSGGWAGF ALDHGLLDGD ATVFQLVKPT TFKVHIIRAT IDDGNVATK // ID A0A0E0KAF5_ORYPU Unreviewed; 266 AA. AC A0A0E0KAF5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G07840.3}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G07840.3, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G07840.3, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G07840.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G07840.3; OPUNC03G07840.3; OPUNC03G07840. DR EnsemblPlants; OPUNC03G07840.4; OPUNC03G07840.4; OPUNC03G07840. DR Gramene; OPUNC03G07840.3; OPUNC03G07840.3; OPUNC03G07840. DR Gramene; OPUNC03G07840.4; OPUNC03G07840.4; OPUNC03G07840. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 266 AA; 30081 MW; 5D97347E3627E2C1 CRC64; MEEQMANLRL TDFEFFKIIL PGSSRTKLKL PDKFARELGD RELRDAKLQV AGAGRRLWDV KVFDDDVNGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRNYRRGQ HDPADSGSSS SSDGSDAATA VEGVGDVAAS QFAVTLRQCN LGDKQAQYLN VPVEFQEAHG YAKREKVVLR MRGEPWTVRL KHSRRERGQR TAFRYGWHRF CVDNGLAVGD TCFFRVLREG DLRRGGGGDD HVLRVAVRKA DGTTLE // ID A0A0E0KGC9_ORYPU Unreviewed; 544 AA. AC A0A0E0KGC9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G23950.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G23950.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G23950.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G23950.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G23950.1; OPUNC03G23950.1; OPUNC03G23950. DR Gramene; OPUNC03G23950.1; OPUNC03G23950.1; OPUNC03G23950. DR OMA; CDDTAES; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 284 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 444 539 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 284 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 444 539 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 544 AA; 61955 MW; 7BB8AA0BE5E6DCCB CRC64; MAGSGSCMKK SCVCCQRYLE HLGGKMSCFL RRMTASSRRS MIMPYKFVNH FGGDVSGTIK LQSPNGILYV VEVTECKNKT VLKCGWEAFV DAHHIEENDS LLFRHIENSH FEVLIFDSDD CEKVFSCAGI GNTCNSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRRR TANLASSSED SGKSFVKLFA YMLNFGKIRI IILKFLVKFC TGEDSPSEHE SVESGDLETS QEPYVLSRRT YLSEIQKEKV DALIQEIQPE TTVFVAIMRR SNVQLPTPFL RPCKSKKWHP RFYKRKDARM NILRGSWVEF VKDNRVQEQD ICVFVPAKDA RRNFTFTVHL LRLAAAYSWG GTGVDRASSS LGRTDVKSAS EISIKEEPID QEENVSSKNR NGVSDESEED EDSKGPADPP YIVPCKSRLS QLQKKIVEEK VRSIQSKLPV YVAIMKKSNV ERTASRCQLE LGARFAAAVR LPDRRQTVVL QRMGERWATV MQIRSRTRRL LITGWHRFVR DNHLRVGDIC LLELKTHERR LTMAVHPIFR EHCC // ID A0A0E0KGD0_ORYPU Unreviewed; 877 AA. AC A0A0E0KGD0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G23960.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G23960.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G23960.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G23960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G23960.1; OPUNC03G23960.1; OPUNC03G23960. DR Gramene; OPUNC03G23960.1; OPUNC03G23960.1; OPUNC03G23960. DR OMA; GASHESP; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 472 531 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 639 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 810 873 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 472 531 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 546 639 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 810 873 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 877 AA; 99023 MW; C52204E8B0E2172A CRC64; MAGSNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSKHS MIMPDRFVSH FGGKIPGTIK LESPNGILYI VEVIECLNKT VLQCGWEAFV DAHHIKEGES LLFRYIENSR FEVLILDSDD CEKVFSCAGI RNSSCIQDKI VDPVDSSGSS SNETTQSSRS RNTANLTAMC SSSEKSGEDS PSGYEFHESV DPLTPSWSDY VLSLRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ SPAPYLVISS CYASVYFPRE SATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWKNFVHD NCLQEEDICL FVPTKGGRSV TFTVHLLRAA ATHYRNGTDV HKIVGSSHDR MNTKMVSQIH IKQTPGDGDN VSSESNKHGA SHESPENEDS DGPSEPPYII SKRRCRLSQL QKKKVEEKVR AIQSEFPICV AIISKLSGGG GNRKFCGLEL SSRYAASYLP DANDQTLVLQ CKGMIWQINL VVHRYTKGKR WFLTTGWRKF AHDNRLRVGD FCLFELKKKK LTMEVHIISN LQHYPETYLE HLGGKMSCFL RRMTADSMHS MIIPNRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT VLQCGWEAFV DAHHIKVGDS LLFRHIENFC FEVMILDSDG CEKVFSCAGI KNSFCVQDKT VDPVDTSGSS CDDTAQSSRS ERSAGCQRDT SNDRRNSTAS LNAVSSSSEE SENVSLKSNR NGVSDESQEN EDSEGPADLP YILPCKSKSR LSSLQKKIVE EKVRSIRSEV PIYVAIMNRS NVGLTSCPCQ LELGARYAAA VHLPDRRQTV VLQRMGQRWD TVMQTKIGRS TRRFLVNGWH RFVRDNRLRV GDICLLELKK HERKLTMTVH TIFSHQS // ID A0A0E0KGD3_ORYPU Unreviewed; 561 AA. AC A0A0E0KGD3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G23990.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G23990.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G23990.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G23990.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G23990.1; OPUNC03G23990.1; OPUNC03G23990. DR Gramene; OPUNC03G23990.1; OPUNC03G23990.1; OPUNC03G23990. DR OMA; PHESQTI; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 458 558 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 458 558 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 561 AA; 64290 MW; 69EE4515B9E4B494 CRC64; MRVLVDYLHL QLTYICYKFQ FTCMAEQDSQ MKKSCDWSKR YVDHLNGKMK CFHMQMSANF GHSMTIPNKF LDHFEGTLSR TIELESPKGI VYIVKVTKHM NKTILQCGWE AFLDAHHIEE NDSLLFRHIE NSRFEVLILD SDGCEKVFSC AGIKRTSSVK ERNAAPVDIS SSTHDETTQS SGSKRIVRCQ KASDSQCGKT TKMAATSSLR ESGEEGTDSS TSEDESSYEL DDPQMSPGRN YVLSRWTSLS EAQEEKVDML VQDIQPEIPV FVAIMKHSNV NSHRACLVIP KRYACAHFPH ESQTITLQRQ GKNKKWHPKF YVRKDGSAYM LHGRWINFVR DNHVKEGDMC IFHLTKFTEG AFRATVHLLR ETKSGSFGSF HTSHKRFDLR DGRMWPKVTG ARRVSSTEDR CNKGEGKRQD SRGSSKPYLT ADRVSLTEEQ VRKLEEVVHP IQSEGPMYVS IMNKSNVGTN GLYTIIFGTQ FAARYLPEGE QTLTLLMTGK SNAWQVKMRP RSGDAQMITT GWRHFVRDNR LQIEDICLFQ LMNDESTLTM TVHIIRHNEK S // ID A0A0E0KGD7_ORYPU Unreviewed; 563 AA. AC A0A0E0KGD7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G24010.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G24010.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G24010.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G24010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G24010.1; OPUNC03G24010.1; OPUNC03G24010. DR Gramene; OPUNC03G24010.1; OPUNC03G24010.1; OPUNC03G24010. DR OMA; FTGRKFR; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 476 560 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 476 560 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 563 AA; 63776 MW; 74272E3B84750A23 CRC64; MAGQGSQMKK SCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLEQ FGGKISRTVE LESPKGNVYV VKVSKHMNKT VLRCGWEAFV DAHQIEENDS LLFRHIENSR FAVLILDSDG CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTVQSSGG ERFARSESGS DSQHSKTAKL GATCSSGRSG EDAKGSSTSE HESDYDLDDP QIAPMPGYVL SRGTSLSEAQ EEKLDMLVQD IRPEIPLYVT IMKHSNVNSH HASLVIAKHY ASAHFPRTSQ TITLKWQGKN RKWHPKFYIR KDQVGYILHG CWIDFVRHNH VNEGDICIFH LKKFTGRKFR ATVHLLRETN PHSFGALHIP KRFESRNGRM RLKMTGDIRV SSTECRRGTM EPSTTNVKKE ADNDQCNNNQ GKRQEPLNFD GPVGSSKPYL TADRVSLTEE QVRKVEEIAH SIQSEGPIYV SKMNKSNVGT DGLYIITLGR QFATRYLPEG EQTLTLLTTG TGKAWQVKMR PRSSDARMFT LGWRDFVRDN RLQTEDICLF QLMTNNERGL AMTIHIIRHN ERS // ID A0A0E0KGE2_ORYPU Unreviewed; 785 AA. AC A0A0E0KGE2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G24050.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G24050.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G24050.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G24050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G24050.1; OPUNC03G24050.1; OPUNC03G24050. DR Gramene; OPUNC03G24050.1; OPUNC03G24050.1; OPUNC03G24050. DR OMA; DICREYA; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 174 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 389 490 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 491 584 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 690 785 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 174 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 389 490 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 491 584 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 690 785 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 785 AA; 90651 MW; E1AC9EB37A26EF8D CRC64; MPKTCKEILS SSDEHLRTQS LTTERQNQPD MDGIDKCNKK MKIEHASSSQ DDQETPTAEV HRMKVEEKVQ AIHSNHPVFV AVMKKSNVTR QPCYVAISRK YANEYFPGGD QMLTLQRHGK RWQVQFCISR RKLRMLSKGW RKFSRDNELQ VGDTCLFELL KNENPFVMTV HIIRKLPVCG QKMRKLNTRS TARDDQEKYF FKVMIGDFHK RMTIPDKFAH HFKGAISKTI KLEPRSGYTF DVQVTKKLNR LVLESGWDSF VNAHDLNMGD FLVFNYNGDF LLQVLIFDPS GCEKSTSCSM ENAIDHVGQG WKAHTDISTS THDQPNGNKH WMQKDSSSEG NKIGNTRSSN TPSKFSGCIL PRGTRLPGVQ EKKMKEKIQT IHSKTPMYGN VMTKCNVLGS PCALEITQQY DDAYLPYNNG QELMLRHRDK SWKVRFYRYK NKSRKLTQGW KRFVQDNYLR MGDLFNKMRR PGARCREGHA HFNGNQIDGQ DKNFFKVMIG RFRERMIIPN EFLQYFRGKI PRTMKLQSRD GCTYDVQVTK NLGKISLQSG WKAFVTAHDL QMGDFLVFSY DGISELKVLI FGPSGCEKVH SSSFSHCGEK WEEPLHISSS SHDLPVKSPI SVSKSEAQWD SSEQENNTAN IEEVALQGDD LQVHPVLNCI LPKHTRLTDM QKQQLESKVR AIHSEIPIYG CILRKSRVHG KSQTVDICRE YADVYLPFKE LNMTLQRHGK NWKVLCRTKG TRTKRLSTGW SRFAQENNLQ VGDICLFELL KNKEYSMNVH IIPKK // ID A0A0E0KGE3_ORYPU Unreviewed; 754 AA. AC A0A0E0KGE3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G24050.2}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G24050.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G24050.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G24050.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G24050.2; OPUNC03G24050.2; OPUNC03G24050. DR Gramene; OPUNC03G24050.2; OPUNC03G24050.2; OPUNC03G24050. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 166 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 358 459 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 460 553 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 659 754 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 166 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 358 459 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 460 553 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 659 754 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 754 AA; 87154 MW; 4172DF76558BD721 CRC64; MPKTCKEILS SSDEHLRTQS LTTERQNQPD MDGIDKCNKK MKIEHASSSQ DDQETPTAEV HRMKVEEKVQ AIHSNHPVFV AVMKKSNVTR QPCYVAISRK YANEYFPGGD QMLTLQRHGK RWQVQFCISR RKLRMLSKGW RKFSRDNELQ KMRKLNTRST ARDDQEKYFF KVMIGDFHKR MTIPDKFAHH FKGAISKTIK LEPRSGYTFD VQVTKKLNRL VLESGWDSFV NAHDLNMGDF LVFNYNGDFL LQVLIFDPSG CEKSTSCSME NAIDHVGQGW KAHTDISTST HDQPNGNKHW MQKDSSSEGN KIGNTRSSNT PSKFSGCILP RGTRLPGVQE KKMKEKIQTI HSKTPMYGNV MTKCNVLGSP CALEITQQYD DAYLPYNNGQ ELMLRHRDKS WKVRFYRYKN KSRKLTQGWK RFVQDNYLRM GDLFNKMRRP GARCREGHAH FNGNQIDGQD KNFFKVMIGR FRERMIIPNE FLQYFRGKIP RTMKLQSRDG CTYDVQVTKN LGKISLQSGW KAFVTAHDLQ MGDFLVFSYD GISELKVLIF GPSGCEKVHS SSFSHCGEKW EEPLHISSSS HDLPVKSPIS VSKSEAQWDS SEQENNTANI EEVALQGDDL QVHPVLNCIL PKHTRLTDMQ KQQLESKVRA IHSEIPIYGC ILRKSRVHGK SQTVDICREY ADVYLPFKEL NMTLQRHGKN WKVLCRTKGT RTKRLSTGWS RFAQENNLQV GDICLFELLK NKEYSMNVHI IPKK // ID A0A0E0KGE4_ORYPU Unreviewed; 318 AA. AC A0A0E0KGE4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G24050.3}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G24050.3, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G24050.3, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G24050.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G24050.3; OPUNC03G24050.3; OPUNC03G24050. DR EnsemblPlants; OPUNC03G24050.4; OPUNC03G24050.4; OPUNC03G24050. DR Gramene; OPUNC03G24050.3; OPUNC03G24050.3; OPUNC03G24050. DR Gramene; OPUNC03G24050.4; OPUNC03G24050.4; OPUNC03G24050. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 223 318 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 223 318 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 318 AA; 36524 MW; 1AC86427B843C1B8 CRC64; MRRPGARCRE GHAHFNGNQI DGQDKNFFKV MIGRFRERMI IPNEFLQYFR GKIPRTMKLQ SRDGCTYDVQ VTKNLGKISL QSGWKAFVTA HDLQMGDFLV FSYDGISELK VLIFGPSGCE KVHSSSFSHC GEKWEEPLHI SSSSHDLPVK SPISVSKSEA QWDSSEQENN TANIEEVALQ GDDLQVHPVL NCILPKHTRL TDMQKQQLES KVRAIHSEIP IYGCILRKSR VHGKSQTVDI CREYADVYLP FKELNMTLQR HGKNWKVLCR TKGTRTKRLS TGWSRFAQEN NLQVGDICLF ELLKNKEYSM NVHIIPKK // ID A0A0E0KGE9_ORYPU Unreviewed; 764 AA. AC A0A0E0KGE9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC03G24100.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC03G24100.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC03G24100.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC03G24100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC03G24100.1; OPUNC03G24100.1; OPUNC03G24100. DR Gramene; OPUNC03G24100.1; OPUNC03G24100.1; OPUNC03G24100. DR OMA; PTRFANN; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000026962; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 436 497 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 706 747 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 436 497 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 706 747 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 764 AA; 85890 MW; 92567FFC7E8F5190 CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADDSK HFLTYMVGDF TKSMVVPTRF ANNFNGHISE DVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDGNGVQ EDDCLLFRYS GVSSFDVLIF DPSGCEKASP HFVENRGFGR SEKFAGAEGG GRNVDKNGHH QHQLEMTLHK KSSRCRSIPR ACKRGLFSDE IEQDHRDEKE DDDEDEKDGY YFCRHGGRVT EYNLTEGDKE EISRVPVPVE PGNPVFVKVI HASHLLASRY TTVGVSPEFT GRYLGPVARE VVMERGSTGG REEWHVRFVR RECSRGFHGT GWRQFARDNG LLAHDVCLFE LRMVGGGGGG LRHRSRRPTM TVHVLRRVRG RFAMYHSDKT VRVPSEGLAQ CFTRLSAATS LGMVTFLGAL LRYPSSLSQR ESLGKNCSVC KEWQEHCYWS HMADHMNLRS PSGKTWSIGV SNSDAGELVL QSGWKEFVDG NGIEEGDSLL FRYSGVSSFD VLIFDPSGCE KASRFGRAEK FAGAEQGGRN GRRTPPIVDG DNGHHHHLEM TLHRNSGRSI PRACKRSLFS DETEQDQQEN DDEDVVAAAE GSHGGYYFSR HGRISRVPVP VEPGNPVFVQ VIHSSHARSS NYCIVLPLKS PPAHCTYQMA FQFPISWLKW TETVLLLFYY VIVKACRRSS PGSICGRWRG MWCWRGRAGE GSDTPCSCTG RTPAGFYGGG WRQFAGDNHL VAHDVCLFEL MMMDGASRRR SRSRRPTMTV HVLRRVRGRF VLLR // ID A0A0E0KP85_ORYPU Unreviewed; 418 AA. AC A0A0E0KP85; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G06860.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G06860.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G06860.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G06860.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G06860.1; OPUNC04G06860.1; OPUNC04G06860. DR Gramene; OPUNC04G06860.1; OPUNC04G06860.1; OPUNC04G06860. DR OMA; FVRDYIT; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 318 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 318 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 418 AA; 46086 MW; 165E852B9E94D5D6 CRC64; MVGSRGDHGG GGAARATQLK VLVPSSFGKM RICDELAAQL VGVGVGAPRA TARVASPLGK VWDVGVVRDG DGRAFLGSGW AEFAAAHGLG VGWFVVLRHD GGGVLAVEAF DTTCCLKEFG ASPAAMTIRS GRATDTSRKP QFLTVLLPGL MDKMRIPGKF VRDHITQENL NSNMAKILSP LGKSWRIELD KDRLGVFFGG GWLQFLSFHR ISRGDVVIFR YEGNLVFKIS VFGVNGLLKD FKSKGINIHQ STGEQQEAPS FSRKKCNKKN SRFREDDEIQ QEMPCSRKGS GNKGRASDRE TKRMKKTRSV YEIGPRSWIK KEINEYVLER CIVSLACTFC ESIGFAEEST IMLMINTTST QGGGSRSWEV AGRRYKDACY LLGRGWRRFC EDNGLKVGDV CVFTVVESTL WRVDVERC // ID A0A0E0KP86_ORYPU Unreviewed; 412 AA. AC A0A0E0KP86; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G06870.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G06870.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G06870.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G06870.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G06870.1; OPUNC04G06870.1; OPUNC04G06870. DR Gramene; OPUNC04G06870.1; OPUNC04G06870.1; OPUNC04G06870. DR OMA; DKFVQHY; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 325 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 325 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 45962 MW; 7D8B0841365D01A5 CRC64; MASRGDHGAG VTRAMPLFKV LMPSSFQKMR ISNELAAHLR GERGDGGAPR RAARVVSPLG KVWDVEVGRD GDGGAFLGRG WAEFAGAHGL GVGWFVVLRH EGGDVLTVKV FDTTCCLKDY GALPPAAARD ASHKPQFLRV LLPGFMERMR IPDKFVQHYI VEENLNSNMA IILSPLGKFW RVELEKDQTG VFFKRGWFQF LSFHGISPDD VMLLRYEGNL VFKIKVFGHN GWQKDFEAKN IRIQQNTGDQ QEPSTFSRMK CNMKNQRPGE DSENQHETPP CSRKVSRKRK RSGGETEKKS ASIYEIGPPS WIKKVINIFI LERCLSLAGT FCKSIGLIEE STITLKNSPA GGSSSRSWEV LCHVNQDRNG CCYLLGAGWK GFCHENGLKV GDVCTFNVVQ TTLWHVVIDR SS // ID A0A0E0KP88_ORYPU Unreviewed; 364 AA. AC A0A0E0KP88; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G06890.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G06890.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G06890.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G06890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G06890.1; OPUNC04G06890.1; OPUNC04G06890. DR Gramene; OPUNC04G06890.1; OPUNC04G06890.1; OPUNC04G06890. DR OMA; QNGNNEH; -. DR OrthoDB; EOG09361F8P; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 120 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 362 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 120 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 362 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 364 AA; 40086 MW; 95CD64B0A514FECE CRC64; MPGGGDHADA GAAKAAMQLK VLMPSSFHKM RISDEFAAHL LGERGDGGAP RRAGRVVSTL GKVWDVEVGR DGDGGAFLGH GWPEFAGAHG LGVGWFVVLR HEGGGGGVLT VKVFDATCCL REFATPPAVG QETRHRIPAK FVQHYIAEEH LNIHMANILS PLGKFWRIEL EKDELGMFFN GGWLQFLSFH GISPGDIVLL RHEGNLVFKI KVFGINGCKK DLKTRDDIRI QQSEPSNRVL ETNMKHLFLQ GNVTRTVDWV KMIKTNYRKH LASLPGIFCK SIGLVEESTI TLMIKNSRGR SSSSSRSWEV ACSVNRNGHG CCNLLPSGWM RFCQDNGLLV GDVCTFSVVE ATLWHVAIDR VERC // ID A0A0E0KPT0_ORYPU Unreviewed; 199 AA. AC A0A0E0KPT0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G08500.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G08500.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G08500.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G08500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G08500.1; OPUNC04G08500.1; OPUNC04G08500. DR Gramene; OPUNC04G08500.1; OPUNC04G08500.1; OPUNC04G08500. DR OMA; HERVEFR; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 20789 MW; C200D0486872C3F0 CRC64; MASDPTDLRC SSPECSGDAG AEDPAAALDA AEKSGGGGGG GGGEVAAGTE TVAPPRPPEP EKVPRHGVLP LLGKPYFTCI MCKSHVQPPF QVVVPRSFAP LLPSKTTPAT LAWRGRSWGM RFTGGRLIQR LEAGWRGFAV DNDLRLGDGC VFELVDGGGG GDGEHERVEF RVQVLRAEIP ARIRGRAGGY TSATPIVID // ID A0A0E0KQZ5_ORYPU Unreviewed; 673 AA. AC A0A0E0KQZ5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G11520.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G11520.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G11520.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G11520.1; OPUNC04G11520.1; OPUNC04G11520. DR EnsemblPlants; OPUNC04G11520.2; OPUNC04G11520.2; OPUNC04G11520. DR Gramene; OPUNC04G11520.1; OPUNC04G11520.1; OPUNC04G11520. DR Gramene; OPUNC04G11520.2; OPUNC04G11520.2; OPUNC04G11520. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 639 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 74704 MW; EFE6A98F71EF4EE5 CRC64; MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS PDPEPQDLEK CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRLMRQ VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF EGDEAPERRF SGTIIGIGSV PAMSTSPWAD SDWKSLKVQW DEPSAIVRPD RISPWELEPL DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFGLWKPPS EATQTLSFSE PQRAREIFPS IPASIFSASS NVEFNSKNEP SILSNQFYWS MRDSKTDSFA ASTNNARVER KQEPTTVGCR LFGIEISSAV EEAMPAATVS GVGYDQTVLS VDVASDQISQ PSNGNKSDAP GTSRERSPLE SQSRQVRSCT KVIMQGMAVG RAVDLTKLGC YGDLLRKLEE MFDIQGELCP TLKRWQVVYT DDEDDMMLVG DDPWDEFCSM VKRIYIYSYE EAKLLSPKSK LPVIGDTVKL SGMNSSHESV DLDNHSSVTN RNC // ID A0A0E0KSW3_ORYPU Unreviewed; 694 AA. AC A0A0E0KSW3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G16630.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G16630.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G16630.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G16630.1; OPUNC04G16630.1; OPUNC04G16630. DR Gramene; OPUNC04G16630.1; OPUNC04G16630.1; OPUNC04G16630. DR OMA; DEPFCAF; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 688 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 75117 MW; 43F96006E2CB1E42 CRC64; MELAGPTEGD GGGSVDSQLW AACAGSMSSV PPVGAAVYYF PQGHAEQASA AVDLSSARVP PLVPCRVVAV RFMADAESDE VFAKIRLVPL RPGDAVVDVG EAAAAEAQRE EENNNNRPRP TSFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYSTEPPV QSVCAKDVHG VEWTFRHIYR GTPRRHLLTT GWSPFVNKKQ LTAGDSIVFM RDEGGNIHVG LRRAKRGFCG IGGDDEGLSS MPGWDQYRGL MRGNATATGG RTPPKGKVPP ENVLTAATRA TSGQPFEVLY YPRASTPEFC VRAGAVRTAM TVQWCPGMRF KMAFETEDSS RISWFMGTVA GVQAADPVRW PQSPWRLLQV TWDEPELLQN VKRVCPWLVE LVSSMPNLHL PSFSPPRKKP RIPPYAEFPH EGQNFTRPAF PPNPMAHDHH HHGFPFLPFP DSSAQPAGIQ GARHAQFASP FPELHIGNLQ PNLMLYAGIR LPPADRAAPA PRQPRIIIST DLTIGSPLGP DDAACSPSSG GKKIDDAKPR GFLLFGQAIL TEEQIKNGNS GGRPASPNWD AEKAPNASEG SDSGVTQGSP TKNTTPSWSL PYFGDNNISH ASEYELEPGQ CKVFVESEAV GRSLDLSALS SFEELYARLS DMFSIGSDEL RSHLVYRSPA GEVKHPGDEP FCAFVKSARK LRILTDAGSD NLGD // ID A0A0E0KUB9_ORYPU Unreviewed; 357 AA. AC A0A0E0KUB9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G20430.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G20430.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G20430.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G20430.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G20430.1; OPUNC04G20430.1; OPUNC04G20430. DR Gramene; OPUNC04G20430.1; OPUNC04G20430.1; OPUNC04G20430. DR OMA; DFRNINA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 111 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 12 39 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 357 AA; 38242 MW; 4FAB538B157BF0C9 CRC64; MEFATTSSRF SKEEEEEEEE EGEQEMEQEQ DEEEEEAEAS PREIPFMTAA AAATASSSSP TSVSPSAAAS AAASTSASGS PFRSSDCAGA SGSGGGGGGE DVEVIEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD AAANEKGLLL SFEDRTGKLW RFRYSYWNSS QSYVMTKGWS RFVKEKPPAP PATLYEHHRF RQGFDFRNIN PAVPARQLVF FGSPGTGIHQ HPPLPPPPPP PLHITVHHPS PVVTAGLPMV LDSVPHVNNP AAAAKRVRLF GVNLDNPHPD GGQSSGHDAN ALSLRMPGWQ RPAPLRSLEL PPHMPVGAAG AESPAASSPS SSSSSKREAH SSLDLDL // ID A0A0E0KWE2_ORYPU Unreviewed; 1034 AA. AC A0A0E0KWE2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G26100.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G26100.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G26100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G26100.1; OPUNC04G26100.1; OPUNC04G26100. DR Gramene; OPUNC04G26100.1; OPUNC04G26100.1; OPUNC04G26100. DR OMA; DYDPMRW; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 222 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 931 1015 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 222 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1034 AA; 114374 MW; 61EDAA087E33D934 CRC64; MRNHGFSPRK VGIFRPKQPR SAASHCSSRR ERLRSQQRER EEAKGAKGRG STTTLLRIIA IYYCPHPTTP IRHHCIPPPQ PLLLPPREKA KTGVLRNAAA LLDEMQLMGE TQGAKKVINS ELWHACAGPL VCLPQRGSLV YYFPQGHSEQ VAATTRKIPN SRIPNYPNLP SQLLCQVHNI TLHADKDTDE VYAQMTLQPE TDVFPIPTLG AYTKSKHPTE YFCKNLTASD TSTHGGFSVP RRAAEKLFPQ LDYSMQPPNQ ELIVRDLHDN MWTFRHIYRG QPKRHLLTTG WSLFVGAKRL KAGDSVLFIR DEKSQLLLGV RRATRQQTTL SSSVLSTDSM HIGVLAAAAH AASSGSSFTI YYNPRTSPSP FVIPVARYNK ATYMQPSVGM RFAMMFETEE SSKRRYTGTV VGISDYDPMR WPNSKWRNLQ VEWDEHGYGE RPERVSIWDI ETPENTLVFP SSTLNSKRQC LPGYGVSVPG LEIGSANMSS FPRAQGNPYG SLQHIPAVGS ELAIMLLNQS GQTLGSPLSF HQSSYSSIIQ NVKQNYIPPL TVSTSACSTK QESMPSDDAQ HQFHMANMQN GDLESSEVQP VIDSISDSKL NVTSRDPRNT DSYPIRSISE QNSKGEPRGK TRRSKKGLSH KAVSEKSDLS SAPSWICDNQ QVGLESKLVG CDEQVNCGNI EDSSGALTQG NFAGQPHGHQ VEQNGVLSPP KVESSKSPDG GKSVNSFPNQ VCFSQFIDGL DWMTQPSYYQ DSNVIQPADA SENIFSSSAD IPPPMIADTM ETFQASCLSD CLPNSIQEFI SSPDLNSLTF LSPEMQNLEV QLQHDGSNLP STSNSFVQMS FSEESGNQSA NLSGLHMESA HRSMNTTSCS QPMSTGGFDA GMHSKLPRLK ESQIMSLPEI HTNSMGTSAC SMGATEYSLD RSAKPMKPPV RTYTKVQKQG SVGRSIDVTG FRNYHELRSA IACMFGLQGK LEHPGSSEWK LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMHVLNDC IQAS // ID A0A0E0KWM2_ORYPU Unreviewed; 838 AA. AC A0A0E0KWM2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G26690.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G26690.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G26690.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G26690.1; OPUNC04G26690.1; OPUNC04G26690. DR Gramene; OPUNC04G26690.1; OPUNC04G26690.1; OPUNC04G26690. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 719 803 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 838 AA; 92861 MW; 4402DAD2313DE651 CRC64; MSSSSAASIG PPPPPPPAPP EEEKKCLNSE LWHACAGPLV CLPTVGTRVV YFPQGHSEQV AASTNKEVEG HIPNYPNLPA QLICQLHDVT MHADVETDEV YAQMTLQPLN PQEQNDAYLP AEMGIMSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAERVF PPLDFTQQPP AQELIARDIH DIEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRASRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLSKY IKAVFHTRIS VGMRFRMLFE TEESSVRRYM GTITEVSDAD PVRWPSSYWR SVKVGWDEST AGERPPRVSL WEIEPLTTFP MYPSLFPLRV KHPWYSGVAS LHDDSNALMW LRGVAGEGGF QSLNFQSPGI GSWGQQRLHP SLLSNDHDQY QAVVAAAAAA SQSGGYLKQQ FLHLQQPMQS PQEHCNLNPL LQQQILQQAG QQQIISPEAQ NIQTMLSPSA IQQQLQQLQQ MQQVQNDQKQ KIQPDQSYQV PSSAVLPSPT SLPSHLREKF GFSDPNANSS SFITSSSSDN MLDSSFLQGS SKAVDLSRFN QPVASEQQQQ QQQAWKQKFM GSQSVSFGGS VLHNSPTSKD GSIENKIGRD VQNQSLFSPQ VDSSSLLYNM VPNLTSNVAD GNLSTIPSGS TYLQNAMYAC LDDSSGLLQN TGENDPTTRT FVKVYKSGSV GRSLDITRFS NYAELREELG QMFGIKGQLD DPDRSGWQLV FVDRENDVLL LGDDPWESFV NSVWYIKILS PEDVHKMGKQ GNDPRGFQED SAAHGGTLAL DNARLQKS // ID A0A0E0KWS6_ORYPU Unreviewed; 525 AA. AC A0A0E0KWS6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G27110.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G27110.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G27110.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G27110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G27110.1; OPUNC04G27110.1; OPUNC04G27110. DR Gramene; OPUNC04G27110.1; OPUNC04G27110.1; OPUNC04G27110. DR OMA; GFVKQHG; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 389 491 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 389 491 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 525 AA; 59465 MW; 2ADC071034F041D3 CRC64; MKRSDAPAFP TPSFPIPHSP TRQWRLQVKR SPQAAIRSAD SDAEASRRTP RRPRRPAITI FRKPEFDWYC CAKINRKESD IREQVSEEKV VTFCASCTRM AGARGSPSFG GGGSRDIEGH DDFVGGGQHN RYHRILEAMS SPLVRRENVV HHQYPTGLIH HPSSTMPVAP CSYVPRYTML PLQHHHRQLQ ISQENFQDRV PSNNVAAPHV PSNFQDLRPM CNGPPFMSFG HTASNRNVLY QNLTPYSFNA WTSNNMPRNP VYTSYHPTAI EDHHATPFHI NNHDTDQGFF TVSTSFRVDQ SFVRAPSPFP PVSSSSRCFS SAQISNGPTH AKQAKKSDIK DPPIILRSDT GSEKNDELDQ TPASEPPSMN HNSENLTIRF NCREYRVILR KELTNSDVGN IGRIVMPKRD AEAHLPALHQ REGVKLKMDD FKLETTWNFK YRFWPNNKSR MYVLESTGGF VKQHGLQTGD IFIIYKSSES EKFVVCGEKA IKPNAVMPIV DCSCKNELNN SEECGFTISL QTKKT // ID A0A0E0KWS7_ORYPU Unreviewed; 426 AA. AC A0A0E0KWS7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G27110.2}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G27110.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G27110.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G27110.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G27110.2; OPUNC04G27110.2; OPUNC04G27110. DR Gramene; OPUNC04G27110.2; OPUNC04G27110.2; OPUNC04G27110. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 290 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 426 AA; 47979 MW; 52F69611032234F8 CRC64; MAGARGSPSF GGGGSRDIEG HDDFVGGGQH NRYHRILEAM SSPLVRRENV VHHQYPTGLI HHPSSTMPVA PCSYVPRYTM LPLQHHHRQL QISQENFQDR VPSNNVAAPH VPSNFQDLRP MCNGPPFMSF GHTASNRNVL YQNLTPYSFN AWTSNNMPRN PVYTSYHPTA IEDHHATPFH INNHDTDQGF FTVSTSFRVD QSFVRAPSPF PPVSSSSRCF SSAQISNGPT HAKQAKKSDI KDPPIILRSD TGSEKNDELD QTPASEPPSM NHNSENLTIR FNCREYRVIL RKELTNSDVG NIGRIVMPKR DAEAHLPALH QREGVKLKMD DFKLETTWNF KYRFWPNNKS RMYVLESTGG FVKQHGLQTG DIFIIYKSSE SEKFVVCGEK AIKPNAVMPI VDCSCKNELN NSEECGFTIS LQTKKT // ID A0A0E0KWS9_ORYPU Unreviewed; 433 AA. AC A0A0E0KWS9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC04G27120.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G27120.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G27120.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G27120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G27120.1; OPUNC04G27120.1; OPUNC04G27120. DR Gramene; OPUNC04G27120.1; OPUNC04G27120.1; OPUNC04G27120. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 297 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 297 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 47789 MW; 73F13BE93E3A101F CRC64; MADARGSSSS GSGGGGGGEG GGEAGNGDFV GSGQQNRYHG ILGAVPPPTV GCQNIAHHQY PASLIHHQSP TMPLPMAPLP YVPQYTMLPT PAVLPSHHHH GQSQISQENF QDWVPSNNVA APHVPSTYQD WRQMCNGSAF MPFGQTAANS NVFYQNLTFN SWTSNNMPRN PVYTSYHPAA IEDHHAPLFH SNNHDIDPGF QTNFRMDQAF VPASSPFPPV SSSSHSFSSA KISNGPTYTK KAKKSNVKDP PVVLRSDMET EKNDEPDQTP VSEPPSMNQN AENLIIRFNC REYRVILRKE LTNSDVGNIG RIVMPKRDAE AHLPALQQRE GVTLKMDDFK FETTWNFKYR FWPNNKSRMY VLESTGGFVK HHGLQTGDIF IIYKSSESGK FVVRGEKAIK PNAIMPVVDC SCKNEINNSE ECGFAISLQT KKT // ID A0A0E0KX75_ORYPU Unreviewed; 568 AA. AC A0A0E0KX75; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 19. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G28180.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC04G28180.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC04G28180.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC04G28180.1; OPUNC04G28180.1; OPUNC04G28180. DR Gramene; OPUNC04G28180.1; OPUNC04G28180.1; OPUNC04G28180. DR OMA; NGARICN; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000026962; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 568 AA; 61937 MW; 5A0A00758ADD6144 CRC64; MARPPAATPP PPPVDRLVWL ACAAPLSRIP VVGTQVFYFP DGHAEQCPAP LPDPLPSAHR FFLCTITAVH LAADTATGEP YATISLLPLR HDAPAPAPAA ELAESSEAQA QEFHYYAKQL TQSDANNGGG FSVPRLCADH IFPALNFEDD PPVQSLTMGD LQGDSWEFRH IYRGTPRRHL LTTGWSKFVN AKLLVAGDTV VFMCCPPDGK LLVGVRRAPR YSGDSPCNAR ARVQPQEVME AVRLAAEQAP FTVTYYPRHG AGEFVVPRVE VDKGLTTPLR SGMQVRVQVM EAEDTRRLAW LNGTLKYVHH QQIWRTLEVD WDASAASSSS MKNRFVNPWQ VQTVDFPPIP MGLKISNNSI TAPMDNGDSL LVPPMLLHPQ PPAAIQGARH NNGHAYADTP SSLTPSMVRT QQLFPRDLQI LVPPTDIVNP QNGSPSNNSL NTPPSASDGM KTIQLFGVTI TSPVQGDTNA AFSSAQVNQR YNMAGPDLFQ HFGEGDASQP EIERHVQTIE QSILVGNEGK QDDIATHHPP QLATKAERDA TINSNSNRVY TVPAASCLNK LQSRSQAR // ID A0A0E0L3W6_ORYPU Unreviewed; 277 AA. AC A0A0E0L3W6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC05G18160.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC05G18160.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC05G18160.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC05G18160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC05G18160.1; OPUNC05G18160.1; OPUNC05G18160. DR Gramene; OPUNC05G18160.1; OPUNC05G18160.1; OPUNC05G18160. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000026962; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31326 MW; FDED38B14C6E4B89 CRC64; MPAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LRRGRGSRIR NTEPGRDYTG RIASYEQQQR AFKRAERLQN SLDPVNPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPREY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAA DEDANESEPA DGDKKKTKTV DAAEQDGSSN AAETLKGAKR RKLRGRR // ID A0A0E0L4N0_ORYPU Unreviewed; 678 AA. AC A0A0E0L4N0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC05G20300.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC05G20300.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC05G20300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC05G20300.1; OPUNC05G20300.1; OPUNC05G20300. DR Gramene; OPUNC05G20300.1; OPUNC05G20300.1; OPUNC05G20300. DR OMA; HICFNPR; -. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000026962; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 73267 MW; 2A96AA041874BAD5 CRC64; MGIDLNTVEE EAEEGTAAAC GGELWHACAG PGVALPRRGS ALVYLPQAHL AAGGGEVPPA GAVAVPPHVA CRVVGVELRA DAATDEVYAR LALVAEGEML RRNFREGGCE DGAGEMEGCD AEKKPRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKTVRPSQE LIAMDLHGTQ WKFRHIYRGQ PRRHLLTTGW SSFVNRKKLV SGDAVLFLRG DDGQLRLGIR RAVQLRNEAL FEPVNSSDSK LRILSSVASS LENKSVFHIC FNPRSGASEY IVPYWRFLKS LNHPFSIGMR FKVCYESEDA NERSAGLISG ISEVDPIRWP GSRWKCLLVR WDDSTDSSHQ NRVSPWEIER VGGSVSVTHS LSSGSKRTKL HFPQGDGNGH PDSMGTENFH RVLQGQEFRG SRSHGVVCSE SPGVPNFQAP DNKRFSADMR GYMRPASGPP QRNTEFAYQP VGFSESLGFP EVLQGQEMSQ VVPLFRGATF GARTQNDRVV SANSVHRSAA PSGLLASTQG HPISQFTLSS SKVSSPSSVL MFNQATAPNH ETEGGTNNKG MHGSQFASQE MLTETVTWPG TQRQTPSEIT SNQFAMARIP APPSGAETGS PKRDAGRSSC RLFGFSLTGN MPGEDGEVLE DGTIEAGCEN PPVLELFGHS HSTPGALHAL CAAAPLGM // ID A0A0E0L5C8_ORYPU Unreviewed; 399 AA. AC A0A0E0L5C8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC05G22370.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC05G22370.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC05G22370.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC05G22370.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC05G22370.1; OPUNC05G22370.1; OPUNC05G22370. DR Gramene; OPUNC05G22370.1; OPUNC05G22370.1; OPUNC05G22370. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000026962; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 129 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 202 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 129 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 202 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 41940 MW; D9FC997237C82DB1 CRC64; MDSTSCLLDD ASSGASTGKK APAPAAPAAT TSKALQRVGS GASAVMDAAE PGAEADSGGE RRAGGGGGKL PSSKYKGVVP QPNGRWGAQI YERHQRVWLG TFTGEAEAAR AYDVAAQRFR GRDAVTNFRP LAESDPEAAV ELRFLASRSK AEVVDMLRKH TYLEELAQNK RAFAAISPPP PKNPASSPPS SSSAAAAREH LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL QIPPPTTSVV ADAGAGAGEC KGVLLNFEDA AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG FYRAAGKHAQ LFIDCKVRAK STTTAAAAFL SAVAAAAAPA PAVKAIRLFG VDLLTAAAAP ERRDAAGGAM TKSKRGMDAI AESQPHVVFK KQCIELALT // ID A0A0E0L5R4_ORYPU Unreviewed; 711 AA. AC A0A0E0L5R4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC05G23400.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC05G23400.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC05G23400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC05G23380.1; OPUNC05G23380.1; OPUNC05G23380. DR EnsemblPlants; OPUNC05G23400.1; OPUNC05G23400.1; OPUNC05G23400. DR Gramene; OPUNC05G23380.1; OPUNC05G23380.1; OPUNC05G23380. DR Gramene; OPUNC05G23400.1; OPUNC05G23400.1; OPUNC05G23400. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000026962; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 711 AA; 77894 MW; 448CE3CB6A5F0497 CRC64; MTGIDLNTVE EDEEEAAAAE AADGSSPAPA RTGAVCLELW HACAGPVAPL PRKGSVVVYL PQGHLEHLGD ASAAAAASAV PPHVFCRVVD VTLLADAATD EVYAQLSLVP EKEEVVRRTD DGDGEDGEAI KQRFARMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE LVAKDLHGTE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG DDGELRLGVR RAAQLKNGSA FPALYNQCSN LGTLANVAHA VATESVFNIY YNPRLSQSEF IVPYWKFMKS LSQPFSVGLR FKMRYESEDA TERRYTGIIT GSGDTDPMWH GSKWKCLLVR WDDDAEFRRP NRVSPWEIEL TSSVSGSHLS TPHSKRLKPC LPHVNPEYMV PRGGGCPDFA ESAQFHKVLQ GQELLGFKSH GGTAAATSQS CEARHLQYID ERSCSSDASN SILGVPRLGD RAPLGNPGFS YHCSGFGESQ RLQKVLQGQE VFRPYRGTLV DASMGSNGFH QQDGPSAPGV VNKWHAQLHG RAAFHGLPAP ALPSQSSSPP SVLMFQQANS KMPRLEFGHG QLDKHENDRR VRFGPYKGID RREQRIPLQP YPTSGEVIDG QVTVEKSHSP GRHGKDGPDN KAVGTNSCKI FGISLTEKVP ARAELDDGDA NYSLQSLKQV PKSLGNSCAT VHEQRPVVGR VIDISTMDMM I // ID A0A0E0L6V2_ORYPU Unreviewed; 191 AA. AC A0A0E0L6V2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC06G00440.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC06G00440.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC06G00440.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC06G00440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC06G00440.1; OPUNC06G00440.1; OPUNC06G00440. DR Gramene; OPUNC06G00440.1; OPUNC06G00440.1; OPUNC06G00440. DR OMA; IDCRRRA; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000026962; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 191 AA; 20827 MW; A317C58ABBAF8EA5 CRC64; MAMTTTIVAW ESRNQQGGGG GGHGGGGERR EHMFEKVVTP SDVGKLNRLV VPKHHAEKYF PLGPAARSSP AGTVLCFEDA RGGDSTWRFR YSYWSSSQSY VITKGWSRFV RDKRLAAGDT VSFCRAGARL FIDCRRRAAA VSPSSPSGAL IKVQLPVVDE KEASCGRRCL RLFGVDLQLR ADAPPALDLQ L // ID A0A0E0L6X1_ORYPU Unreviewed; 176 AA. AC A0A0E0L6X1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC06G00610.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC06G00610.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC06G00610.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC06G00610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC06G00610.1; OPUNC06G00610.1; OPUNC06G00610. DR Gramene; OPUNC06G00610.1; OPUNC06G00610.1; OPUNC06G00610. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000026962; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 176 AA; 19161 MW; E8DC1C1043BC9C40 CRC64; MQQPDTDPTK LKAKAIIKPK VEPCHDDDEL PAPPPPVSGS DEDWEATTPL TAGNPFFTAV IAKSHLHPKF QMWIPPRFLH WLPEPEARTA AVLHSGGKSW PTSYCGDLKM KKLDSGWSEF AVDNRLRVGD ACVFELIAIG VAGGLEFQVQ ILRGGLPAEV VTSKGVTSDE PIVIVD // ID A0A0E0L8Y6_ORYPU Unreviewed; 1054 AA. AC A0A0E0L8Y6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC06G05940.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC06G05940.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC06G05940.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC06G05940.1; OPUNC06G05940.1; OPUNC06G05940. DR Gramene; OPUNC06G05940.1; OPUNC06G05940.1; OPUNC06G05940. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000026962; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 939 1023 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1054 AA; 116725 MW; 147C658E31002C39 CRC64; MKDQGSSGVS PGPVEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSSALAMQ DVMGSSNEDP TKRLNAQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPTQQLKAAA TLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ GLTGLPIAGS LPQPALTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQLLQHQFGG SDAGQLKQSQ SQQTPLNHIT GSLTPQQLVR SHSALAESGD PSSSTAPSAS RISPINSLSR ANQGSRNLND MVATPQIDNL LQEIQSKPDN RIKNDIQSKE TIPIHNRHPV SDQLDASSAT SFCLDESPRE GFSFPPVCLD NNVQVDPRDN FLIAENVDAL MPDALLSRGM ASGKGMCALT SGQRDHRDVE NELSSAAFSS QSFGVPDMSF KPGCSSDVAV TDAGMPSQGL WNNQTQRMRT FTKVQKRGSV GRSIDITRYR DYDELRHDLA CMFGIQGQLE DPYRMDWKLV YVDHENDILL VGDDPWEEFV GCVKSIKILS AAEVQQMSLD GDLGSVPPQT QSCSASDDAN AWRG // ID A0A0E0LDQ2_ORYPU Unreviewed; 411 AA. AC A0A0E0LDQ2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC06G19660.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC06G19660.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC06G19660.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC06G19660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC06G19660.1; OPUNC06G19660.1; OPUNC06G19660. DR Gramene; OPUNC06G19660.1; OPUNC06G19660.1; OPUNC06G19660. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000026962; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 344 407 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 344 407 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 45743 MW; 45C177A83F010217 CRC64; MPLSAGSRRR PKFAAPLLSP ACLHQLSVPG EFAARLDDAG EEERGRRAAA AAVVLVVGPL GKVCRVELCR SEPAGDGEAW LGGGWSEHAA AHGLGEGWGV VLRLERRGVA SLRAFDPGFC LARFCTPHEG MRTKDRPRFI KLLQQEDLEK MKIPEKFVQQ HLAETYTNSH QNAIIVCPLG KFWRVELQRE QPDMLLRDGW APFLAAHDLS KDNILLFRYE GYMVFTVEVF LQNGCLKEYK TAVLYLTDGT EGPSNAPQQS AAKVVVSPVK RKRTRRNEGT CLEGSNRKSR ASPISVKVEP QKKHVSIVSQ NSFTKEMTAY SIHSLPSVRG TFCSQIGLLE ACAITLKTSM KKKGSWRVAF KTANTYGYIN GPGWRKFCLE NEVKEGDRLT FNAIETAVWH VVIVRKMVGD M // ID A0A0E0LEN9_ORYPU Unreviewed; 916 AA. AC A0A0E0LEN9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC06G22430.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC06G22430.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC06G22430.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC06G22430.1; OPUNC06G22430.1; OPUNC06G22430. DR Gramene; OPUNC06G22430.1; OPUNC06G22430.1; OPUNC06G22430. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026962; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 785 869 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 916 AA; 101727 MW; C9BCDAA2EFF75C7D CRC64; MRLSSSSGSV LPAQAVSPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GLGMSPWMQP RLDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL PSQILQQVQP QFQQQQYLQN INETTMQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE SQQQQQQQSQ CMQVPHQQMQ QQKNMTNYQS IPNALSPFSQ LSSPSQSSPM TLQTVLPFSQ PQSYPDTSMS SLSPSNTSTM HNTLRPFSSE APSHLSMPRP TAVPVPDPWS SKRVAVESLL PSRPQVTSQM EQLDSTAPSI PQSSALAPLP GRGCLVDQDG NSDPQNHLLF GVNIDSQSLL MQGSIPSLQG ENDSTTIPYS TSNFLSPSQN DFPLDQTLSS ADCLDESGYV PCSQNSDQVI NRPPATFVKV YKSGTYGRSL DITRFSSYHE LRRELGRLFG LEGQLENPLR SGWQLVFVDR EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPFELL SSAPGKRLGS SCDDYVSRQE SRSLSTGIAS VGSVEF // ID A0A0E0LEV4_ORYPU Unreviewed; 695 AA. AC A0A0E0LEV4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC06G22960.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC06G22960.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC06G22960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC06G22960.1; OPUNC06G22960.1; OPUNC06G22960. DR EnsemblPlants; OPUNC06G22960.2; OPUNC06G22960.2; OPUNC06G22960. DR EnsemblPlants; OPUNC06G22960.3; OPUNC06G22960.3; OPUNC06G22960. DR Gramene; OPUNC06G22960.1; OPUNC06G22960.1; OPUNC06G22960. DR Gramene; OPUNC06G22960.2; OPUNC06G22960.2; OPUNC06G22960. DR Gramene; OPUNC06G22960.3; OPUNC06G22960.3; OPUNC06G22960. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026962; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 692 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 75554 MW; 87263DECD755914A CRC64; MITFVDSAAK ERERENDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHA EHAQGHGPVE FPAGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAADADD GIGAAAAAAQ EEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVLAK DVHGVVWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFMRTENGD LCVGIRRAKK GGVGGPEYLP PPPPSPAGGN YGGFSMFLRG DDDNNKMAAA ARGKVRARVR PEEVVEAANL AVGGQPFEVV YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK LCVPLYPELP IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH GLHQLDHGMQ PRIAAGLIIG HPAARDDISC LLTIGSPQNK KKSDGKKAPA QLMLFGKPIL TEQQISLGDA APVAVKKSSS DGNAENTVNK SNSDVSSPRS NQNGTTDNLS CGGIPLCQDN KVLDVGLETG HCKVFMQSED VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA AGALKHTGDE PFSEFTKTAR RLNILTDTSG DNLAR // ID A0A0E0LFB8_ORYPU Unreviewed; 1016 AA. AC A0A0E0LFB8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC06G24250.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC06G24250.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC06G24250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC06G24250.1; OPUNC06G24250.1; OPUNC06G24250. DR Gramene; OPUNC06G24250.1; OPUNC06G24250.1; OPUNC06G24250. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026962; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 882 966 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1016 AA; 111574 MW; D18096437DB454C7 CRC64; MMKQAPPPPA SSAVTATTTA MAAVAAVAAV GSGCEGEKKA PAINSELWHA CAGPLVSLPP AGSLVVYFPQ GHSEQVAASM QKDVDAHVPS YPNLPSKLIC LLHNVTLHAD PETDEVYAQM TLQPVTSYGK EALQLSELAL KQARPQTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEL QARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVIFVRDE KQQLLLGIRR ANRQPTNISS SVLSSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPTEFV IPFAKYQKAV YGNQISLGMR FRMMFETEEL GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESAAGER RNRVSIWEIE PVAAPFFICP PPFFSAKRPR QLDDESSEME NLLKRAMPWL GEEICIKDPQ TQNTIMPGLS LVQWMNMNMQ QSSSFANTAM QSEYLRSLSN PNMQNLGATD LSRQLCLQNQ LLQQNNIQFN TPKLPQQMQA VNELSKATIP LNQLGSLLSQ PAVTLAQLPL IQEQQKLLLD MQQQLSNSQT LPQQQMMPQQ STKVPSQNTP SPLPVQQEPQ QKLLQKQAML ADTSEATVPP TTSANVISIS GSPLMTTGAA HSVLTEEIPS CSTSPSTANG NHLLQPILGR NKHCSMINTE KVPQSAAPMS VPSSLEAVTA TPRMIKDSPK LNHNVKQSVV ASKLANAGTG SQNYVNNPPP TDYLETASSA TSVWLSQNDG LLHQNFPMSN FNQPQMFKDA PPDAEIHGAN TSNNALFGIN GDGQLGFPIG LGTDDFLSNG IDAAKYENHI STEIDNSYRI PKDAQQEISS SMVSQSFGAS DMAFNSIDST INDGGFLNRS SWPPAAPLKR MRTFTKVYKR GAVGRSIDIS QFSGYDELKH ALARMFSIEG QLEERQRIGW KLVYKDHEDD ILLLGDDPWE EFVSCVKCIR ILSPQEVQQM SLEGCDLGNN IPPNQACSSS DGGNAWRARC DQNSGNPSNG SYEQFE // ID A0A0E0LHW6_ORYPU Unreviewed; 221 AA. AC A0A0E0LHW6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G05190.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G05190.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G05190.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G05190.1; OPUNC07G05190.1; OPUNC07G05190. DR Gramene; OPUNC07G05190.1; OPUNC07G05190.1; OPUNC07G05190. DR OMA; LANCAKA; -. DR OrthoDB; EOG093603HK; -. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 24426 MW; 807432F0F52CF12A CRC64; MHRPLPARDP VGIGGQREFC FFDKKLSESD VTANGGGGAL IVIPKSSAAE HDHVLPAIPD LRVTDLHGGR RWEFGHTWSD TDTERSHTLA AAGWSAFVKA KRLCVGDTVI FMRRPGGELL VGVRRKPYGG MPVGIPDKHV SDAGFYATLG HPFRATYCPW QGTAEFVVRR EEVEGSPPIS LTPGTRVRLL MNPDNTRRRV QPVYGTVRDV DSRSAWRMLE V // ID A0A0E0LHW7_ORYPU Unreviewed; 930 AA. AC A0A0E0LHW7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G05200.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G05200.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G05200.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G05200.1; OPUNC07G05200.1; OPUNC07G05200. DR Gramene; OPUNC07G05200.1; OPUNC07G05200.1; OPUNC07G05200. DR OMA; VDGHAEQ; -. DR OrthoDB; EOG0936037F; -. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 494 593 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 494 593 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 930 AA; 102571 MW; 2D328AF856846303 CRC64; MAAAPPPLAD DINRITVTCG SHAPPRTPAA SPPVGSVVFY FVDGHAEQFC QFPAPLLEQL AVPPAPRFFL CTVADVRLRA DALTNEAYAA ITLDPVGDHD IPRLAPASAV PAAAAAAGGQ QQQQQQFRSF VKTLMSSDAD YRNRFAAPMF VAKDVFPPLV DAKAVQPLVV KDLQGSPMTF DYGRNGSRVT LVKGWKKFQD DMDFVDGDSV IFMRRGDDEL YVGVRRRCTL DKPLNTLRSR PTTPLQVAVQ EVIAAAAHAA AGEQFTVTYR SRQDGDEFVV PREVVEEGLR LRARFTPEME VEFVWAVEDG APPSVGPQGM ITAMDDTTRM WRALEIGWTG NSKMNKRANF WQVRSVRYGD RASAAPPPPP SPKRAAAAAA EGSPSSSAQA QAFNVTRDMW LACAAPKSGR LPAVGSLVYY FPDGHAEQCP SRPPEPLPGR IFLCKVTEVH LCATRNEPMA TISLVPVAAD DHSLQLQAPA DPSSTPPQNL VSFVKPLTYT DAVKNRYRFI IPKKDAVMGV LPQLEQNDDV LLRIKDTDGM EWVFNYTWKE HTRMFRSGWI KFTNANRLVT GDNVVFMRRI DNGEIFMGLR RTLKPELGSV EEVIDAVWKA ARLKPFKVTY TSRQDGDEFV VPCDIVLHGL LAKFTPGMVV NFVWAAEEGK LPIIGPQGKV IAIENYATSI WRMIQVEWAS SSEMNRYVNF WQIREVPGES SSQTSTCILN TQNYSPAPDR NTVHALQLPE GTRQLQHNKK SVSSSSTEEL PTFRLFGQEM TPGVPPRRDG ASGQASLFSH YLLKDEDELV PTMRKRLEAL LPDSTRSPAP TFHTLPSFLV SVAAPAVAKA SDLYCEEPDR DDDDGLAAIL HDAWELPTRP VLRNFNGATF LSKPWLALAV DGHNVVAEPQ RLMPGLLLPE EMALDPASRA FLSLADGRFP // ID A0A0E0LJ93_ORYPU Unreviewed; 1457 AA. AC A0A0E0LJ93; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC07G09160.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G09160.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G09160.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G09160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G09160.1; OPUNC07G09160.1; OPUNC07G09160. DR Gramene; OPUNC07G09160.1; OPUNC07G09160.1; OPUNC07G09160. DR OMA; TSICIFG; -. DR OrthoDB; EOG093600LR; -. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR006553; Leu-rich_rpt_Cys-con_subtyp. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00367; LRR_CC; 5. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 148 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1457 AA; 163495 MW; 23B571EB33319850 CRC64; MSGYWRRRRS GKPADVDPAG NPSGGYCREG EKREQAEILS VRPRNTSGGF SDAEYSYGSN SVGSFAGGLG LDLSLVPTPP ASSSLHTSGS RRASGPSDSD QISTRKTSGR WGWGWGRTRR RPQAPGDADD DVGGGGAAKV IIEKEHMFDK VVTPSDVGKL NRLVIPRKHA ECYFPRDVAS DERGVVLSFE DRAGKPWRFR YSYWNGSRSY VMTKGWSRFV RENRLNAGDT VSFYRGASEV TRDRLFIHSK RQMQDANLAG GGGTNILPHL GYAGRQGHIN LLFQLLVQVR TMVSSFGEAG SPPPNAPLAT VQFFTYKALK DCLQDLHYYS LLSMVGRNHK SQSRSARFVC GVDAKIRDTI PTLDALIQFR SLSLSDPALQ IYGARTVSSH CILLCRGVLG IMGVRCSENM EEEQRMVQVP AFDDLKYPGH GKITRMEEQT MPLSLANPIY LLPTAITNLL YLDLSNCTDI VQLPPSLGSS LHKLSALNLS CCYSLHALPD SLVCLYDLQI LLLSFCHNLQ NLPVPFGDLS NLRLLDLSGC HSLILLPDSF VNLGSLENLN LSDCISLMGI PQQFGNLRKL EYLNFAGCYI VDLDVYCLSK LVNLKCLTLS HHTDIKDFPY SFTDLTRHLD LSRWWKNNWV HTQCNLKSYR CHQQSIINKL LSDGSDEGDI TSEQSLTSIC IFGESGTGKT ELLHEIYNDQ MILEGFHLRI WINMCDKKRL LEKIIEFTTC AYCYDAPSSI LEETVREELN GKRFLLVLND ADIEKQCFWT DVWKLANVGA AGSAFIVTTR SKEVASVFGA METYDMNILS KEECFMVFQE HAGCGLDINN YHELTKVGWK IVEKCGSNPL CIKALSGLLC HSETALSEID SLVGGIVPAL RLCYDLLPSC LNQCFKFCSL FPKDYVFVKH HIIQLWISQG FVYPEEDSHL EDTGLQYFNE LFCRSFFQHC PFSNDHEDKF VMHELFHDLA RSVSKDESFS SEEPFFSLHE NICHLSLVIS DSNTVVLTKE HRHLQSLMVV RRSASEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI VDLPGSIGMM KHLRFLALNN TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL RHLDVQKELG NIHVSMPSGL GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG LQNITAGDDA KEENLVGKQF LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL AIQNYPGNLF PNWIKDSCLC MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG QRSNSLTTDG KDAPRFPSLE ILNLWEMYSL QFWNGTRYGD FPQLHRLSIS RCPKLSNLPP LISLVYLSLH CGDQLPALSE FPSLKSLKIE GFQKLKSVSF CPEMPMLQKL EISDCKELVS IDVPLLSVSN LKVVRCPKLH FGGSSLEGCL MWEKFKR // ID A0A0E0LM82_ORYPU Unreviewed; 955 AA. AC A0A0E0LM82; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC07G17640.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G17640.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G17640.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G17640.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G17640.1; OPUNC07G17640.1; OPUNC07G17640. DR Gramene; OPUNC07G17640.1; OPUNC07G17640.1; OPUNC07G17640. DR OMA; PAGMNQI; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 453 554 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 708 758 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 453 554 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105697 MW; 6676C2C512C1E646 CRC64; MSSPAQPPPT RPPVAAPSPS LSAAAPISVQ PPPLQPKPPP PPPPQPPHAV ISVGPPPTPQ QQQQQLQGPP GHAPPQQRPR ICFNTHCKDP KSDGPRRRGW RLRNSDFAEL CDRCYHSFEH GGFCETFHLE VAGWRNCESC GKRLHCGCIV SVHAFVHLDA GGVECVMCAR KSHAAMAPSQ IWSSSMHMAQ NVADRKENFV KSWRPPAGQF SSQWRQNNMW SMSTMQSDLQ QRLAFEFDRP SGSEKLLPGR TFIHAHEKKF DDMHDRPTTP AGMNQIMRER YANGHTQHTT LDPTYAYTIY HREGTNPNLH DHSHHAGEND HLTARKGVTP DPCSSVSTTF KLDSHHPSIL KDDPSALPAG LSPNFSSANG PKDHIRIGPT QQQQQQMASS SLQKQFYSHS VIDNDFQAQL RNGRPRMDAK ARSQLLPRYW PRITDQELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP AISQAEGLPL KVQDATGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKATNLSAEQ DQPTKPANGV PPPPEANNKV AVPDSSPNAA VPRPIKVNTE SKSSSPVEQA TACKIDKGAL PQKEGPGTSS SSPVPVKRKA TSVGPKIKRF RMDSEESMEL KITWEEAQEL LRPPPKAPSI VVVDGHEFEE YEEPPILGRR TYFVTDQSGE NHQWAQCEDC SKWRKLPVDA LLPSKWTCSD NKWDSERSSC DSAQEINMEE LAEMIPIKPG AAKKTKGKVD TDNIDVSDGL DTLANLAILG EGESLPSQPT TRHPRHRPGC SCIVCIQPPS GKGPKHKQTC TCNVCMTVRR RFRTLMMRRE KRQQSEKDSG APRRKEPGQS SEPVPQSGSS APPASSSSPP QKADTNGEGP EDMSIDNKRT SSPVKNQIDL NSQPEREDEQ SPKSDATRLL RDNPT // ID A0A0E0LM83_ORYPU Unreviewed; 937 AA. AC A0A0E0LM83; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC07G17640.2}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G17640.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G17640.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G17640.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G17640.2; OPUNC07G17640.2; OPUNC07G17640. DR Gramene; OPUNC07G17640.2; OPUNC07G17640.2; OPUNC07G17640. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 453 554 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 708 758 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 453 554 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 937 AA; 103868 MW; AC9E6772C97BF77B CRC64; MSSPAQPPPT RPPVAAPSPS LSAAAPISVQ PPPLQPKPPP PPPPQPPHAV ISVGPPPTPQ QQQQQLQGPP GHAPPQQRPR ICFNTHCKDP KSDGPRRRGW RLRNSDFAEL CDRCYHSFEH GGFCETFHLE VAGWRNCESC GKRLHCGCIV SVHAFVHLDA GGVECVMCAR KSHAAMAPSQ IWSSSMHMAQ NVADRKENFV KSWRPPAGQF SSQWRQNNMW SMSTMQSDLQ QRLAFEFDRP SGSEKLLPGR TFIHAHEKKF DDMHDRPTTP AGMNQIMRER YANGHTQHTT LDPTYAYTIY HREGTNPNLH DHSHHAGEND HLTARKGVTP DPCSSVSTTF KLDSHHPSIL KDDPSALPAG LSPNFSSANG PKDHIRIGPT QQQQQQMASS SLQKQFYSHS VIDNDFQAQL RNGRPRMDAK ARSQLLPRYW PRITDQELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP AISQAEGLPL KVQDATGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKATNLSAEQ DQPTKPANGV PPPPEANNKV AVPDSSPNAA VPRPIKVNTE SKSSSPVEQA TACKIDKGAL PQKEGPGTSS SSPVPVKRKA TSVGPKIKRF RMDSEESMEL KITWEEAQEL LRPPPKAPSI VVVDGHEFEE YEEPPILGRR TYFVTDQSGE NHQWAQCEDC SKWRKLPVDA LLPSKWTCSD NKWDSERSSC DSAQEINMEE LAEMIPIKPD GLDTLANLAI LGEGESLPSQ PTTRHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCMTV RRRFRTLMMR REKRQQSEKD SGAPRRKEPG QSSEPVPQSG SSAPPASSSS PPQKADTNGE GPEDMSIDNK RTSSPVKNQI DLNSQPERED EQSPKSDATR LLRDNPT // ID A0A0E0LPT8_ORYPU Unreviewed; 910 AA. AC A0A0E0LPT8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC07G24850.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G24850.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G24850.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G24850.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G24850.1; OPUNC07G24850.1; OPUNC07G24850. DR Gramene; OPUNC07G24850.1; OPUNC07G24850.1; OPUNC07G24850. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 910 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5002366570. FT DOMAIN 371 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 635 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 371 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 910 AA; 99848 MW; 4981772B2D249405 CRC64; MAGMAAAAAA AAAALVAVKR CMNAACGAPA PSPAGGEWRK GWPLRSGGFA VLCDKCGLAY EQLVFCDIFH QKESGWRDCS FCGKRLHCGC IASKNSFDLL DSGGVQCVTC IKNSAVQSVP SPVVPKLFSS QNNQRLFGKS DDLLSGRPLE TSSLMVDARN DDLTIIAKNS LPFMVKNIET GQSSNILRQK ELENGARQIK WELPTLSIGD MGRIPFLTRS QSALESPQCA RRDENKDPTT ESTTSESLSE ACLNMSLGIA SNGNKLEATS TVERPMLSPT TGFPEGRELT TALSPFQHAQ RARHFLTRPP RVGEGAVFDP TKDMLPHLRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SVLGDTLFSS TNENLAITDK FGSRPDEGSL QFLKRGRNIG SKSRRLSMDA EEAWELKLYW DEVQELLRPA PTAKPTVVMI EDYEIEEYDE PPVFAKRSIF TIRSTGEQDQ WIQCDDCSKW RRLPLNVIVA SKWTCADNTI DQKSCSCSAP EELTPKELHI VLQQYEDMRR RRNSFGFKQN IPEMDAVSLD ALATAAVFGD VGNQGSPSVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKKIAWM NRDEPEGSSL SRSPQTVDTT RDGDVTMFDK VDINKGHIDL NFHPTAVREE ERHGGQPRVS MVTLLEVANR PLENYMKQNG LMSLAGEQGS SSTCTGAATV PQPAPVESEE RTSNNDGGRV VTAEQPESMA VDEAGDNQAD KAAGTAAGEF // ID A0A0E0LPT9_ORYPU Unreviewed; 931 AA. AC A0A0E0LPT9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC07G24850.2}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G24850.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G24850.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G24850.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G24850.2; OPUNC07G24850.2; OPUNC07G24850. DR Gramene; OPUNC07G24850.2; OPUNC07G24850.2; OPUNC07G24850. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 353 446 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 605 655 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 353 446 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 931 AA; 102436 MW; C9F1A6B6D69F0C03 CRC64; MRCMNAACGA PAPSPAGGEW RKGWPLRSGG FAVLCDKCGL AYEQLVFCDI FHQKESGWRD CSFCGKRLHC GCIASKNSFD LLDSGGVQCV TCIKNSAVQS VPSPVVPKLF SSQNNQRLFG KSDDLLSGRP LETSSLMVDA RNDDLTIIAK NSLPFMVKNI ETGQSSNILR QKELENGARQ IKWELPTLSI GDMGRIPFLT RSQSALESPQ CARRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEPEGR PLTIQDAKGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIEPGGKLVM GFRKATNTVS LPDSQISAIA NGSVLGDTLF SSTNENLAIV SGYSGFLQSI KGAADLHTSS LYDHHVNSAD GDVSWLKTDK FGSRPDEGSL QFLKRGRNIG SKSRRLSMDA EEAWELKLYW DEVQELLRPA PTAKPTVVMI EDYEIEEYDE PPVFAKRSIF TIRSTGEQDQ WIQCDDCSKW RRLPLNVIVA SKWTCADNTI DQKSCSCSAP EELTPKELHI VLQQYEDMRR RRNSFGFKQN IPEMDAVSLD ALATAAVFGD VGNQGSPSVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKKIAWM NRDEPEGSSL SRSPQTVDTT RDGDVTMFDK VDINKGHIDL NFHPTAVREE ERHGGQPRVS MVTLLEVANR PLENYMKQNG LMSLAGEQGS SSTCTGAATV PQPAPVESEE RTSNNDGGRV VTAEQPESMA VDEAGDNQAD KAAGDSAAAL A // ID A0A0E0LPU0_ORYPU Unreviewed; 949 AA. AC A0A0E0LPU0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC07G24850.3}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G24850.3, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G24850.3, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G24850.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC07G24850.3; OPUNC07G24850.3; OPUNC07G24850. DR Gramene; OPUNC07G24850.3; OPUNC07G24850.3; OPUNC07G24850. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000026962; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 24 {ECO:0000256|SAM:SignalP}. FT CHAIN 25 949 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5002366567. FT DOMAIN 371 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 623 673 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 371 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 949 AA; 103916 MW; AE812D77A79C02B4 CRC64; MAGMAAAAAA AAAALVAVKR CMNAACGAPA PSPAGGEWRK GWPLRSGGFA VLCDKCGLAY EQLVFCDIFH QKESGWRDCS FCGKRLHCGC IASKNSFDLL DSGGVQCVTC IKNSAVQSVP SPVVPKLFSS QNNQRLFGKS DDLLSGRPLE TSSLMVDARN DDLTIIAKNS LPFMVKNIET GQSSNILRQK ELENGARQIK WELPTLSIGD MGRIPFLTRS QSALESPQCA RRDENKDPTT ESTTSESLSE ACLNMSLGIA SNGNKLEATS TVERPMLSPT TGFPEGRELT TALSPFQHAQ RARHFLTRPP RVGEGAVFDP TKDMLPHLRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SVLGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSLY DHHVNSADGD VSWLKTDKFG SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDQ KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAL ATAAVFGDVG NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK QRQSEREEAE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRD GDVTMFDKVD INKGHIDLNF HPTAVREEER HGGQPRVSMV TLLEVANRPL ENYMKQNGLM SLAGEQGSSS TCTGAATVPQ PAPVESEERT SNNDGGRVVT AEQPESMAVD EAGDNQADKA AGDSAAALA // ID A0A0E0LRG1_ORYPU Unreviewed; 276 AA. AC A0A0E0LRG1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC08G03290.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC08G03290.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC08G03290.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC08G03290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC08G03290.1; OPUNC08G03290.1; OPUNC08G03290. DR Gramene; OPUNC08G03290.1; OPUNC08G03290.1; OPUNC08G03290. DR OMA; FNVECSG; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000026962; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 34 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 276 AA; 29872 MW; 61DA6734FF944CF3 CRC64; MYMDLTLGGA VLQVEEATEE EEEEEEQALA LGQETAPAAA ALVLGRRHGG GGGGVVAAER EHMFDKVVTP SDVGKLNRLV VPKQHAERFF PAAAAGTQLC FEDRAGTPWR FRYSYWGSSQ SYVMTKGWSR FVRAARLSAG DTVSFSRAGD RYFIDYRHCH RHGGRDISFA ATATMPAAAA WPHFGLVQTA PASYGGHGRS AAATMFLDTV APVVAGHRGE VGPSGQRSFR LFGVNVECGG DVEAAAAEEE DADDDDDDDG DRRGEEMELV MWTNHR // ID A0A0E0LTT0_ORYPU Unreviewed; 712 AA. AC A0A0E0LTT0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC08G09920.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC08G09920.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC08G09920.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC08G09920.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC08G09920.1; OPUNC08G09920.1; OPUNC08G09920. DR Gramene; OPUNC08G09920.1; OPUNC08G09920.1; OPUNC08G09920. DR OMA; PSEYESI; -. DR OrthoDB; EOG093605DY; -. DR Proteomes; UP000026962; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 210 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 419 518 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 711 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 210 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 419 518 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 615 711 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 80696 MW; 21D7EBD1449FC87B CRC64; MSKPCECCHT KMKFIWQMNG NFKHSMIIPD RFLSHFAAKS SGTITLETPN ENSPFWMGGE NDFLSFRYRG SSRFAVTVFD ASGLEKVYFC CAAAGMKNAS NNVQKKARTY IDISSSSDDH TTQSSASDTS DECQKARSIH HGKQAKKPSV SSSEDLSAKD GSSGYRSLES ENLDRFSSLY YLPGHHKLTE EQKVELVALV DKIQPEICVL VIIMNKTNVK RHPDLVVPKD YALLHFPHKN QIITLELPGK KNWACKFRIR ADGGGRHLYL GDFVHNNHIL EGDLCIFQPM TKHNASVFSI TVHLIRKERT DIASSHQTRR INSGGISSSS HDDTTRYNQG DKRFARRDSS SHIRKITKMA HEESGEGSPD ENDSFKSDDL QTLPITDYVL SYKSYLSGAQ TEQVIMLLRE IRPKKPVLVA VMRKKNVQWS SPFLEIPKEY AAAHFPNESV AITLQMLGKN KKWHPRLCME NDKRIYMLRG HWLDFVLDNH VMEGDICLFE PMKGGKIFVF TVHLLCATPT DRSGGISVQM ASSSHGRTNP KMASGVRIKE EPTDGNGSSE NKKHGASNES LQNRNSNDSP YILPHRSHLS PFQEKDVLEK IEAIQYEVPI CVAIMKDYNV DYSSRKYCML ELSSRYVARH FPGTSQDVVL HCMGNTWETK MIVSGNLTRW FLTGGWTKFA CDNRLRAGDI CLFELKEERR LTMAVHIIFS KQ // ID A0A0E0LWZ2_ORYPU Unreviewed; 1074 AA. AC A0A0E0LWZ2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC08G18850.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC08G18850.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC08G18850.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC08G18850.1; OPUNC08G18850.1; OPUNC08G18850. DR Gramene; OPUNC08G18850.1; OPUNC08G18850.1; OPUNC08G18850. DR Proteomes; UP000026962; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 970 1053 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1074 AA; 118734 MW; 989C396E2AF9E268 CRC64; MASPGGGGGE EGEGRGVAKV NQELWYACAG PLVSLPPQGS LVVYFPQGHS EQVAASMRKD ADAQIPSYPN LPSKLICILH SVTMLADPDT DEVYARMTLQ PVSNVTQCDK ETLLASELAL KQTRPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPRLD FSMQPPAQEL QARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA GDSVLFIRDA KQQLLLGIRR ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSQFTIYY NPRASPSEFV IPFAKYQKAV YGNQLSLGMR FRMMFETEES GTRRYMGTIT AAPSERRTRV SLWEIEPIIA PFFIYPSPLF TAKRPRLPGM TDEDTEMDGL LKRAMPWLGE EICKKDLSIQ NSVVPGLNLA QWMNMQHNSS LPGTVVQPEL LNSLSGKPVQ NLAAADLSRQ ISFHPQFLQQ NNIQFNTALV PQQNQQTEQL AKVIATPNQL GSVIIPQKVV QDCNLEQRQH VVNQPVQGSQ PNINIAQPQL VVQAQLQQPQ VILQAQLQQP QVVVQAQLQQ TQPSVQSHTV LQGGLQQIQL LQQQQPHVQH QQIPQQLQHH QQQTQQLQPV QQVQQSVQEH QQIKIQPVHV STDASLNTQV ADHQMKLQLL KALQPQQPLI SEQQKMLLDL QQQMINSQSA PQQCVTNQAI SLHNSNTVQY PTQGKVQSHQ VQDLTGNVIP NSKSDIVTSM GASSLHAAGG RQLLKTDDVP STSTSPSTNS NPVLLQSIPS SSKNQSLTTA GKTSQSSVVL GPTIEQDTKP YQNVKQTVMI PKTTEQRPAA GQDCINNNPQ MDYLDTSSSA TSVCLSQADG SLQQNFPPSS FHQHHLLKDT VPDSEFEVTD PRNNLLFGVN IDGQLGLPLN ADLLANDIET DKYMDQLPGN GISNFISSKD SQQELSSSMI SHSFGVADMA FNSIDSAIND TPFLNRNSRS AAGPAHQRMR TYTKVHKRGA VGRSIDINRY SGYDELKHDV ARMFGIEGQL GDQNRVGWKL VYEDHEKDVL LVGDDPWEIL SPQEEMQMRL VGDFGDSFLP NQACSSSDGA LLFK // ID A0A0E0LWZ3_ORYPU Unreviewed; 1102 AA. AC A0A0E0LWZ3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC08G18850.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC08G18850.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC08G18850.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC08G18850.2; OPUNC08G18850.2; OPUNC08G18850. DR Gramene; OPUNC08G18850.2; OPUNC08G18850.2; OPUNC08G18850. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000026962; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 994 1077 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1102 AA; 122072 MW; 243FC7650ED4F84E CRC64; MASPGGGGGE EGEGRGVAKV NQELWYACAG PLVSLPPQGS LVVYFPQGHS EQVAASMRKD ADAQIPSYPN LPSKLICILH SVTMLADPDT DEVYARMTLQ PVSNVTQCDK ETLLASELAL KQTRPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPRLD FSMQPPAQEL QARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA GDSVLFIRDA KQQLLLGIRR ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSQFTIYY NPRASPSEFV IPFAKYQKAV YGNQLSLGMR FRMMFETEES GTRRYMGTIT GISDLDPVRW KTSHWRNIQV AWDEAAPSER RTRVSLWEIE PIIAPFFIYP SPLFTAKRPR LPGMTDEDTE MDGLLKRAMP WLGEEICKKD LSIQNSVVPG LNLAQWMNMQ HNSSLPGTVV QPELLNSLSG KPVQNLAAAD LSRQISFHPQ FLQQNNIQFN TALVPQQNQQ TEQLAKVIAT PNQLGSVIIP QKVVQDCNLE QRQHVVNQPV QGSQPNINIA QPQLVVQAQL QQPQVILQAQ LQQPQVVVQA QLQQTQPSVQ SHTVLQGGLQ QIQLLQQQQP HVQHQQIPQQ LQHHQQQTQQ LQPVQQVQQS VQEHQQIKIQ PVHVSTDASL NTQVADHQMK LQLLKALQPQ QPLISEQQKM LLDLQQQMIN SQSAPQQCVT NQAISLHNSN TVQYPTQGKV QSHQVQDLTG NVIPNSKSDI VTSMGASSLH AAGGRQLLKT DDVPSTSTSP STNSNPVLLQ SIPSSSKNQS LTTAGKTSQS SVVLGPTIEQ DTKPYQNVKQ TVMIPKTTEQ RPAAGQDCIN NNPQMDYLDT SSSATSVCLS QADGSLQQNF PPSSFHQHHL LKDTVPDSEF EVTDPRNNLL FGVNIDGQLG LPLNADLLAN DIETDKYMDQ LPGNGISNFI SSKDSQQELS SSMISHSFGV ADMAFNSIDS AINDTPFLNR NSRSAAGPAH QRMRTYTKVH KRGAVGRSID INRYSGYDEL KHDVARMFGI EGQLGDQNRV GWKLVYEDHE KDVLLVGDDP WEILSPQEEM QMRLVGDFGD SFLPNQACSS SDGGHPWRIT GD // ID A0A0E0LWZ4_ORYPU Unreviewed; 1069 AA. AC A0A0E0LWZ4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC08G18850.3, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC08G18850.3, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC08G18850.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC08G18850.3; OPUNC08G18850.3; OPUNC08G18850. DR Gramene; OPUNC08G18850.3; OPUNC08G18850.3; OPUNC08G18850. DR Proteomes; UP000026962; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 97 199 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 961 1044 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 97 199 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1069 AA; 118506 MW; 54883BF00988E970 CRC64; MASPGGGGGE EGEGRGVAKV NQELWYACAG PLVSLPPQGS LVVYFPQGHS EQADPDTDEV YARMTLQPVS NVTQCDKETL LASELALKQT RPQTEFFCKT LTASDTSTHG GFSVPRRAAE RIFPRLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLLAGDS VLFIRDAKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SQFTIYYNPR ASPSEFVIPF AKYQKAVYGN QLSLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKTS HWRNIQVAWD EAAPSERRTR VSLWEIEPII APFFIYPSPL FTAKRPRLPG MTDEDTEMDG LLKRAMPWLG EEICKKDLSI QNSVVPGLNL AQWMNMQHNS SLPGTVVQPE LLNSLSGKPV QNLAAADLSR QISFHPQFLQ QNNIQFNTAL VPQQNQQTEQ LAKVIATPNQ LGSVIIPQKV VQDCNLEQRQ HVVNQPVQGS QPNINIAQPQ LVVQAQLQQP QVILQAQLQQ PQVVVQAQLQ QTQPSVQSHT VLQGGLQQIQ LLQQQQPHVQ HQQIPQQLQH HQQQTQQLQP VQQVQQSVQE HQQIKIQPVH VSTDASLNTQ VADHQMKLQL LKALQPQQPL ISEQQKMLLD LQQQMINSQS APQQCVTNQA ISLHNSNTVQ YPTQGKVQSH QVQDLTGNVI PNSKSDIVTS MGASSLHAAG GRQLLKTDDV PSTSTSPSTN SNPVLLQSIP SSSKNQSLTT AGKTSQSSVV LGPTIEQDTK PYQNVKQTVM IPKTTEQRPA AGQDCINNNP QMDYLDTSSS ATSVCLSQAD GSLQQNFPPS SFHQHHLLKD TVPDSEFEVT DPRNNLLFGV NIDGQLGLPL NADLLANDIE TDKYMDQLPG NGISNFISSK DSQQELSSSM ISHSFGVADM AFNSIDSAIN DTPFLNRNSR SAAGPAHQRM RTYTKVHKRG AVGRSIDINR YSGYDELKHD VARMFGIEGQ LGDQNRVGWK LVYEDHEKDV LLVGDDPWEI LSPQEEMQMR LVGDFGDSFL PNQACSSSDG GHPWRITGD // ID A0A0E0M8U8_ORYPU Unreviewed; 701 AA. AC A0A0E0M8U8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC10G11840.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC10G11840.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC10G11840.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC10G11840.1; OPUNC10G11840.1; OPUNC10G11840. DR EnsemblPlants; OPUNC10G11840.2; OPUNC10G11840.2; OPUNC10G11840. DR Gramene; OPUNC10G11840.1; OPUNC10G11840.1; OPUNC10G11840. DR Gramene; OPUNC10G11840.2; OPUNC10G11840.2; OPUNC10G11840. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000026962; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 606 686 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 75935 MW; A8FFFB3FC5F970A8 CRC64; MKEVGEEEEV RCLDPQLWHA CAGGMVQMPA ARSRVYYFAQ GHAEHANGGG VAAAAELAAA TGPRALPALV LCRVEGVQFL ADRESDEVYA KIRLVPVSPG EVEFREPDEL CPLGGGGGDA SESPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV LAKDVHGVVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRTR LGELCVGIRR AKRVACGGME CMSGWNTPGY GGGGFSAFLK EEENKLMKGH GGGGYMKGKG NKVKMADVVE AASLAANGQP FEVAYYPRAS TPEFVVKAAS VQAAMRIQWC SGMRFKMAFE TEDSSRISWF MGTISSVQVA DPNRWPNSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSSI PPIHLGPFSS PRKKLRVPPH PDFPFEGHLL NPIFHGNPLG PSNSPLCCYP DTAPAGIQGA RHAQFGLPLT DHQLNKLHLG LFHGGSFNRL DAITPPSRIS KGFVVSSAPA HDNVSCLLSI GTPQVAEKSD ERKTTPHIML FGKAIFTEQQ ITSSGSTETL SPGVTGNSSP NGNAHKTGNA SDGSGSSVCI GFSSQGHEAS DLGLEVGHCK VFMESEDVGR TIDLSVFGSY EELYGRLADM FGIEKEEIIN HLHFRDAAGV VKHPGEVPFS DFMKAARRLT IIAGDRERIE RPLIECLVEQ A // ID A0A0E0MA59_ORYPU Unreviewed; 358 AA. AC A0A0E0MA59; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC10G15350.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC10G15350.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC10G15350.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC10G15350.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC10G15350.1; OPUNC10G15350.1; OPUNC10G15350. DR Gramene; OPUNC10G15350.1; OPUNC10G15350.1; OPUNC10G15350. DR OMA; FEDSERP; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000026962; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 39059 MW; 9EA9454FFDD603D0 CRC64; MEFTPIAPPT RVAGGEEDSE RGAAVAAWAV VEKEHMFEKV VTPSDVGKLN RLVIPKQHAE RYFPLDAAAA GGGGKGLVLS FEDRTGKAWR FRYSYWNSSQ SYKVVTPSDV GKLNRLVIPK QHAERYASAA AAAATGKGLV LSFEDRTGKA WRFRYSYWNS SQSYVMTKGW SRFVKEKRLG AGDTVSFGRG LGDAARGRLF IDFRRRRQDA GTFMFPPTAA PSHSHHHHHH HQRQLPLPSV PLCPWRDYTA YGGYGYGGST PASSRHVLFL RPQVPAAVVL KSVPVHVTAS AVQEATTTRP KRVRLFGVNL DCPAMDDDDI AGAASRTAAS SLLQLPSPSS STSSSTAGKR MCSLDLGL // ID A0A0E0MAR9_ORYPU Unreviewed; 294 AA. AC A0A0E0MAR9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC10G16940.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC10G16940.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC10G16940.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC10G16940.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC10G16940.1; OPUNC10G16940.1; OPUNC10G16940. DR Gramene; OPUNC10G16940.1; OPUNC10G16940.1; OPUNC10G16940. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000026962; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 32057 MW; D65408684E1FBAC4 CRC64; MEFTPIAPPT RVAGGEEDSE RGAAVAAWAV VEKEHMFEKV VTPSDVGKLN RLVIPKQHAE RYFPLDAAAA GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGTFM FPPTAAPSHS HHHHHHHQRQ LPLPSVPLCP WRDYTAYGGY GYGGSTPASS RHVLFLRPQV PAAVVLKSVP VHVTASAVQE ATTTRPKRVR LFGVNLDCPA MDDDDIAGAA SRTAASSLLQ LPSPSSSTSS STAGKRMCSL DLGL // ID A0A0E0MCM5_ORYPU Unreviewed; 289 AA. AC A0A0E0MCM5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC11G03320.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G03320.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G03320.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G03320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G03320.1; OPUNC11G03320.1; OPUNC11G03320. DR Gramene; OPUNC11G03320.1; OPUNC11G03320.1; OPUNC11G03320. DR OMA; QHAGESQ; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 32525 MW; 6FFEAC77540D3439 CRC64; MAMNPLFSQE QPQSWPWGVA MYANFHYHHH YEKEHMFEKP LTPSDVGKLN RLVIPKQHAE RYFPLGGDAA DKGLILSFED EAGAPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDIV HFERVRGSFG VGDRLFIGCR RRGDTAQTPA PPPAVRVAPA AQNAGEQQPW SPMCYSTSGS YPTSPANSYA YRRAADHDHG DMHHADESPR DTDSPSFSAG SAPSRRLRLF GVNLDCGPEP EADTTAAATM YGYMHQHSSY AAMSAVPSYW LVLTSNTTKL RQLLSYKHQ // ID A0A0E0MDJ1_ORYPU Unreviewed; 361 AA. AC A0A0E0MDJ1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC11G05820.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G05820.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G05820.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G05820.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G05820.1; OPUNC11G05820.1; OPUNC11G05820. DR Gramene; OPUNC11G05820.1; OPUNC11G05820.1; OPUNC11G05820. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 253 348 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 253 348 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 40605 MW; EA0B44C71E6FE4CD CRC64; MQKIPSSFNQ CLQNQPTGMV SLVDRSGNTW SAELTSDSEG FFFVHGWKEF VKDNSIQCGQ FLVFTYDKRS QFSVTVFDPS GIDKISTFSS HPSKNVIIKT ESDEGGMVTA AITTEKMAPA LKENNGITGK RTRDVLMEGR VVFKKSSEAN VCESSRRKRA GVTAGKSKAT STSHNSTRGS SCSMSDEDNS SSQSPRPPLL MRFLSGEVSR RGKCISKGQR QLTVISQRRP VTEAEKDHAL QRAREFKSKN PFAVQIMMES YVYVGFFMNI PCEFVRECLP RTSKRITLWD PQGKAWEVNY VYYSDRSVGS FSGGWGKFAV GNNLEKFDVC VFELVQKDNI KVHIYRVIPE ITPHRLRSDL K // ID A0A0E0MDJ2_ORYPU Unreviewed; 435 AA. AC A0A0E0MDJ2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC11G05830.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G05830.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G05830.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G05830.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G05830.1; OPUNC11G05830.1; OPUNC11G05830. DR Gramene; OPUNC11G05830.1; OPUNC11G05830.1; OPUNC11G05830. DR OMA; TEFVWEN; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 315 410 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 315 410 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 435 AA; 49208 MW; 00B3F0DD00CB3FDE CRC64; MGRRKNREAG RSRREEEEEE ERAVMVVGAE QGGRMEKGKA KEGDMSCFGR SFFRVLLTLE SLERMKIPSS FNQYFQNQPL GMVSLVDRSG NTWSAELTSD SEGFFFVHGW KEFVKDNSIQ CGQFLVFTYD KQSQFSVTVF DPSGIDKISA FSSHPSKNVI IKTESDEGGM VTAAITTEKM APAKEYNGIT GKRTRDVDCL MKDRVVCKKS SEANDCENSR RKRAGVTASK SKATSTSYNS TRGSSCSMSD EDNSSSQPPR QPLLMRLLSG EVSRRGISKG QRQLTVISQR RSVTEAEKDH ALQKAGEFKS KNPFAVQIMM ESYVHVGFFM NMPCEFVREC LPRTSKRITL WDPQGMAWEV NYVYYSDRSV GSFSGGWGKF AVGNNLEKFD VCVFELVEQD NIKVYIYRVI PEITPHRLRS DPKLSSKYTG LRFEN // ID A0A0E0MFU8_ORYPU Unreviewed; 805 AA. AC A0A0E0MFU8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G12650.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G12650.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G12650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G12650.1; OPUNC11G12650.1; OPUNC11G12650. DR Gramene; OPUNC11G12650.1; OPUNC11G12650.1; OPUNC11G12650. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 805 AA; 88657 MW; 98429F32058C0889 CRC64; MATAEVEAAA VGVGVGGGEG DAAAVAVAAR GGGAAGGGED ALFTELWSAC AGPLVTVPRV GEKVFYFPQG HIEQVEASTN QVGEQRMQLY NLPWKILCEV MNVELKAEPD TDEVYAQLTL LPESKQQEDN GSTEEEVPSA PAAAHVRPRV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGENGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPA EFVVPYDRYM ESLKRNYSIG MRFKMRFEGE EAPEQRFTGT IVGMGDSDPA GWPESKWRSL KVRWDEASSI PRPERVSPWQ IEPAVSPPPV NPLPVPRTKR LRPNATALPA DSSAIAKEAA PKVAVESEPN GMQRTFQTQE NATPKSGFGN SSELESAQKS IMRPSGFDRE KNNISTQWKL GSDGRMQMIR PESYSEMLSG FQPPKDVQTP QGFCSLPEQI TAGHSNFWHT VNAQYQDQQS NHNMFPSSWS FMPPNTGLGL NKQNYSMIQE VGGLSQRPGN TKFGNGVYAA LPGRGTEQYS RGWFGHMMPN SHTDDTQPRL IKPKPLVVAH GDVQKAKGAS CKLFGIHLDS PAKSEPLKSP SSVVYDGTPQ TPGATEWRRP DVTEVEKCSD PSKSMKPLDT PQADSVPEKP SSQQASRNMP CKSQGVSTRS CKKGPNKEWM VVYTDNEGDM MLVGDDPWIE FCDMVHKIFI YTREEVQRMN PGTLNSSFAL VQPDGIGYLS CYLAT // ID A0A0E0MFU9_ORYPU Unreviewed; 843 AA. AC A0A0E0MFU9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G12650.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G12650.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G12650.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G12650.2; OPUNC11G12650.2; OPUNC11G12650. DR Gramene; OPUNC11G12650.2; OPUNC11G12650.2; OPUNC11G12650. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 729 813 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 92953 MW; A9CD06B2355CA0B0 CRC64; MATAEVEAAA VGVGVGGGEG DAAAVAVAAR GGGAAGGGED ALFTELWSAC AGPLVTVPRV GEKVFYFPQG HIEQVEASTN QVGEQRMQLY NLPWKILCEV MNVELKAEPD TDEVYAQLTL LPESKQQEDN GSTEEEVPSA PAAAHVRPRV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGENGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPA EFVVPYDRYM ESLKRNYSIG MRFKMRFEGE EAPEQRFTGT IVGMGDSDPA GWPESKWRSL KVRWDEASSI PRPERVSPWQ IEPAVSPPPV NPLPVPRTKR LRPNATALPA DSSAIAKEAA PKVAVESEPN GMQRTFQTQE NATPKSGFGN SSELESAQKS IMRPSGFDRE KNNISTQWKL GSDGRMQMIR PESYSEMLSG FQPPKDVQTP QGFCSLPEQI TAGHSNFWHT VNAQYQDQQS NHNMFPSSWS FMPPNTGLGL NKQNYSMIQE VGGLSQRPGN TKFGNGVYAA LPGRGTEQYS RGWFGHMMPN SHTDDTQPRL IKPKPLVVAH GDVQKAKGAS CKLFGIHLDS PAKSEPLKSP SSVVYDGTPQ TPGATEWRRP DVTEVEKCSD PSKSMKPLDT PQADSVPEKP SSQQASRNMP CKSQGVSTRS CKKVHKQGIA LGRSVDLTKF NGYEELIAEL DDMFDFNGEL KGPNKEWMVV YTDNEGDMML VGDDPWIEFC DMVHKIFIYT REEVQRMNPG TLNSSFALVQ PDGIGYLSCY LAT // ID A0A0E0MFV0_ORYPU Unreviewed; 828 AA. AC A0A0E0MFV0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G12650.3, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G12650.3, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G12650.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G12650.3; OPUNC11G12650.3; OPUNC11G12650. DR Gramene; OPUNC11G12650.3; OPUNC11G12650.3; OPUNC11G12650. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 700 784 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 828 AA; 92226 MW; BBFC800F82FEF7DE CRC64; MATAEVEAAA DALFTELWSA CAGPLVTVPR VGEKVFYFPQ GHIEQVEAST NQVGEQRMQL YNLPWKILCE VMNVELKAEP DTDEVYAQLT LLPESKQQED NGSTEEEVPS APAAAHVRPR VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP TQELVAKDLH GVEWRFRHIF RGQPRRHLLQ SGWSVFVSAK RLVAGDAFIF LRGENGELRV GVRRAMRQQT NVPSSVISSH SMHLGVLATA WHAVNTGTMF TVYYKPRTSP AEFVVPYDRY MESLKRNYSI GMRFKMRFEG EEAPEQRFTG TIVGMGDSDP AGWPESKWRS LKVRWDEASS IPRPERVSPW QIEPAVSPPP VNPLPVPRTK RLRPNATALP ADSSAIAKEA APKVAVESEP NGMQRTFQTQ ENATPKSGFG NSSELESAQK SIMRPSGFDR EKNNISTQWK LGSDGRMQMI RPESYSEMLS GFQPPKDVQT PQGFCSLPEQ ITAGHSNFWH TVNAQYQDQQ SNHNMFPSSW SFMPPNTGLG LNKQNYSMIQ EVGGLSQRPG NTKFGNGVYA ALPGRGTEQY SRGWFGHMMP NSHTDDTQPR LIKPKPLVVA HGDVQKAKGA SCKLFGIHLD SPAKSEPLKS PSSVVYDGTP QTPGATEWRR PDVTEVEKCS DPSKSMKPLD TPQADSVPEK PSSQQASRNM PCKSQGVSTR SCKKVHKQGI ALGRSVDLTK FNGYEELIAE LDDMFDFNGE LKGPNKEWMV VYTDNEGDMM LVGDDPWIEF CDMVHKIFIY TREEVQRMNP GTLNSRSEDS HANSIERGSV GREMRGCLST SSLNSENC // ID A0A0E0MFV1_ORYPU Unreviewed; 857 AA. AC A0A0E0MFV1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G12650.4, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G12650.4, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G12650.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G12650.4; OPUNC11G12650.4; OPUNC11G12650. DR Gramene; OPUNC11G12650.4; OPUNC11G12650.4; OPUNC11G12650. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 729 813 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 857 AA; 94504 MW; 9F6F8A72E34E5669 CRC64; MATAEVEAAA VGVGVGGGEG DAAAVAVAAR GGGAAGGGED ALFTELWSAC AGPLVTVPRV GEKVFYFPQG HIEQVEASTN QVGEQRMQLY NLPWKILCEV MNVELKAEPD TDEVYAQLTL LPESKQQEDN GSTEEEVPSA PAAAHVRPRV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGENGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPA EFVVPYDRYM ESLKRNYSIG MRFKMRFEGE EAPEQRFTGT IVGMGDSDPA GWPESKWRSL KVRWDEASSI PRPERVSPWQ IEPAVSPPPV NPLPVPRTKR LRPNATALPA DSSAIAKEAA PKVAVESEPN GMQRTFQTQE NATPKSGFGN SSELESAQKS IMRPSGFDRE KNNISTQWKL GSDGRMQMIR PESYSEMLSG FQPPKDVQTP QGFCSLPEQI TAGHSNFWHT VNAQYQDQQS NHNMFPSSWS FMPPNTGLGL NKQNYSMIQE VGGLSQRPGN TKFGNGVYAA LPGRGTEQYS RGWFGHMMPN SHTDDTQPRL IKPKPLVVAH GDVQKAKGAS CKLFGIHLDS PAKSEPLKSP SSVVYDGTPQ TPGATEWRRP DVTEVEKCSD PSKSMKPLDT PQADSVPEKP SSQQASRNMP CKSQGVSTRS CKKVHKQGIA LGRSVDLTKF NGYEELIAEL DDMFDFNGEL KGPNKEWMVV YTDNEGDMML VGDDPWIEFC DMVHKIFIYT REEVQRMNPG TLNSRSEDSH ANSIERGSVG REMRGCLSTS SLNSENC // ID A0A0E0MG23_ORYPU Unreviewed; 522 AA. AC A0A0E0MG23; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G13190.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G13190.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G13190.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G13190.1; OPUNC11G13190.1; OPUNC11G13190. DR Gramene; OPUNC11G13190.1; OPUNC11G13190.1; OPUNC11G13190. DR OrthoDB; EOG093603HK; -. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 522 AA; 59082 MW; 83BA1963E1BC0BA5 CRC64; MIPRRDVPAH GEPGFRFFEK QLSPADVTIN ALVLPAGAEH VLPPLDIAAY QYQTARLVDV KDLRGKRFEF RYIWGRRRRR HMLGDHGVND NEGWRGFVKA KRLATMDTVV FMRRPAGGGG GGGEGVLLVG VRRAPHVHYS RPGVERNKVV FEVCLAMQGV TAFEVTYYTR QGTFEFVVWR DEYFGFYFSA FRGRRLIGIM RPPRSPTRYT DKLILGKSYV SHQRLLRLRV LRHAPPASRA RSRRRGQREF CFFDKKLLES DVTANGGGSA LIVIPKSSAA EHEQVLPPIP DLRVTDLHGG RWEFGHTWSD TDTERSHTLA AGWSAFIKAK RLFVGDTVIF MRRPGGELLV GVRRNTYGGM PVGIPDKHVA GRRVLRDVGP RHPFRATYCP WQGTAEFVVR RDEVEGSPSL ISLTPGTRVR LLMNPDDARR RMTQAVHGAV RDVYSRSAWC MLEVSILGKS NPFSSLLHYR VLMRRQQLHR LCSPEMPPRL LHRCAASSDN GVLFFIVNPQ DGSQANNSAS HQ // ID A0A0E0MG25_ORYPU Unreviewed; 855 AA. AC A0A0E0MG25; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC11G13210.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G13210.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G13210.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G13210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G13210.1; OPUNC11G13210.1; OPUNC11G13210. DR Gramene; OPUNC11G13210.1; OPUNC11G13210.1; OPUNC11G13210. DR OrthoDB; EOG093609VU; -. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 574 672 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 574 672 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 855 AA; 92212 MW; AB75A68EF202DFC6 CRC64; MGMERAFLGS GSSSVLLGLP VLRSMRDLRT RQGVVLQLAQ LVDEAEVEVT TSARQHGGDD GGREERKKAN STQSGGIAGE IHEASSIGGE PTHDRGQAPS LPLPSCRRRE QRPRQSCFQS ATSVSEHGSN GRRKLPCRAR YPHLYISLTP SSPPFPHFKS RPPQFRIRHA CRSQPPRPWR RHLFRAGLQP RWRRRRGRAI RAAPLPHPCC PRFVDGLRGV ERARYRRHLF SVVSSLGGVD GEDAPCASPP SPIPAGPASS TVSAASSAPA TGAYLGGITG HRLGQEEDSG GHENASVSGI HVPSSRGIAF VSFGQRPQEV LFTDLRLGLG SVSATDHMTN PSSAGQQQRP QEVLFTDLRV GLGSVSATGH MTNSSSAGQH RVQAQQQQSG RCPKQSRICG SSSSSQLDHL PPPAGAGAAV ADMVVATTVP LQPPPPPTAA AAAGSSSPTM PEPGHGGATP TTSSSAQAQA QAQVIVTRDM WLACAAPKSG RLPAVGSLVY YFPDGHAEQC PSRPQEPLPG RIFLCKVTDV RFRATTTNEA LATISLVPVA ANDHALQLQA PADPGPAPAR NLVSFVKRLT YTDAAKNRFI VPKDHAAVGV LPYLQLDDDV PLRIKDLNGK EWAFNYTRRA HSRMFRSGWM EFATANSLVT GDNVVFMRCD NGDMFVGVRR KLNRPAPVLV EEVIEAVWQA ARCEPLKVSY CSRQDGDEFV VPRDIVDEAL SARFTPGMAV NFVRAVEEGK LLTIGPQEEV ISIENYATSI WRMIQIGWTE SSEMNKYANF WQVRSIGYDD LASAAPPPPS PKRLKSCEVA TASTSSSACN GDEQVQTMRN RLEALLPDNI KAIIDQKGNP KGKDT // ID A0A0E0MG26_ORYPU Unreviewed; 797 AA. AC A0A0E0MG26; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC11G13210.2}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC11G13210.2, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC11G13210.2, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC11G13210.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC11G13210.2; OPUNC11G13210.2; OPUNC11G13210. DR Gramene; OPUNC11G13210.2; OPUNC11G13210.2; OPUNC11G13210. DR Proteomes; UP000026962; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 516 614 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 516 614 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 797 AA; 85995 MW; CF20869DD2286538 CRC64; MVTGSMLLWK ANSTQSGGIA GEIHEASSIG GEPTHDRGQA PSLPLPSCRR REQRPRQSCF QSATSVSEHG SNGRRKLPCR ARYPHLYISL TPSSPPFPHF KSRPPQFRIR HACRSQPPRP WRRHLFRAGL QPRWRRRRGR AIRAAPLPHP CCPRFVDGLR GVERARYRRH LFSVVSSLGG VDGEDAPCAS PPSPIPAGPA SSTVSAASSA PATGAYLGGI TGHRLGQEED SGGHENASVS GIHVPSSRGI AFVSFGQRPQ EVLFTDLRLG LGSVSATDHM TNPSSAGQQQ RPQEVLFTDL RVGLGSVSAT GHMTNSSSAG QHRVQAQQQQ SGRCPKQSRI CGSSSSSQLD HLPPPAGAGA AVADMVVATT VPLQPPPPPT AAAAAGSSSP TMPEPGHGGA TPTTSSSAQA QAQAQVIVTR DMWLACAAPK SGRLPAVGSL VYYFPDGHAE QCPSRPQEPL PGRIFLCKVT DVRFRATTTN EALATISLVP VAANDHALQL QAPADPGPAP ARNLVSFVKR LTYTDAAKNR FIVPKDHAAV GVLPYLQLDD DVPLRIKDLN GKEWAFNYTR RAHSRMFRSG WMEFATANSL VTGDNVVFMR CDNGDMFVGV RRKLNRPAPV LVEEVIEAVW QAARCEPLKV SYCSRQDGDE FVVPRDIVDE ALSARFTPGM AVNFVRAVEE GKLLTIGPQE EVISIENYAT SIWRMIQIGW TESSEMNKYA NFWQVRSIGY DDLASAAPPP PSPKRLKSCE VATASTSSSA CNGDEQVQTM RNRLEALLPD NIKAIIDQKG NPKGKDT // ID A0A0E0MJU4_ORYPU Unreviewed; 265 AA. AC A0A0E0MJU4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC12G03300.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC12G03300.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC12G03300.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC12G03300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC12G03300.1; OPUNC12G03300.1; OPUNC12G03300. DR Gramene; OPUNC12G03300.1; OPUNC12G03300.1; OPUNC12G03300. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000026962; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 265 AA; 29690 MW; B1BC13FA0C96E666 CRC64; MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLSGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV HFERLRGLGA GDRLFIGCRR RGESAPAVRV TPPAALNGGE QQPWSPMCYS TSGSSYDPTS PANSYAYHRS VDQDHSDILH AGESQRDADA KSSSAASAPP PSRRLRLFGV NLDCGPEPEA DQATAMYGYM HHQSPYTAVP NYWGS // ID A0A0E0MMC7_ORYPU Unreviewed; 851 AA. AC A0A0E0MMC7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC12G10620.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC12G10620.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC12G10620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC12G10620.1; OPUNC12G10620.1; OPUNC12G10620. DR Gramene; OPUNC12G10620.1; OPUNC12G10620.1; OPUNC12G10620. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000026962; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 714 798 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 93598 MW; 935107EF248FA5B1 CRC64; MAAAATAAAA AAPAPVEGLA GGGGGGVDGL FVELWRACAG PLVTVPAVGE RVFYLPQGHI EQVEASTNQV AEQQGAPLYN LPWKIPCKVM NVELKAEPDT DEVYAQLTLL PEKQQDGNGS GNGDVSKDKV EEQEVVPPAA TERHRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SQHPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGEN GELRVGVRRA MRQQANIPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPSEFVV PRDLYEESLK RNHSIGMRFK MTFEGEEAAE QRFTGTIVGI GDSDPSGWAD SKWRSLKVRW DEAASVPRPD RVSPWQIEPA NSPSPVNPLP APRTKRARPN VVASSPDLST VNKEVASKVM PNSQQNGLPR AFHSQESMNL RSRFGDSSEL NTSQKLTLWS SGSNQEKNNA SVQRELGSQS WMQMRKPDGS SEILSGFQPL KDTRNPLSSF PSQISGNRSN TWNTINVHYP DQNANHNMFP GTWSLMPPNT GFGVNQQNYL MTPDIILPQR SLNAKFGGNG AFTSLRAHGI DQRSSGWLGH IEPSSHIDDA SSSLIKPQPL VIDHNVQKAK GSSCMLFGIS LDSPAKPEQL ISPPSVAFDG KLQQDALEED ECSDPSKTVK PLDGAQHDSA TEKHQSCPEG ARNIQSKQQN GSSRSCKKVH KQGIALGRSI DLTKFTCYDE LIAELDQMFD FNGELNSSSK NWMVVYTDNE GDMMLVGDDP WNEFCNMVHK IFIYTREEVQ KMNPGALNSR SEDSRSTSVE RGLVGEGLQG LLWFARTEDD ISMVGRNLFV V // ID A0A0E0MP58_ORYPU Unreviewed; 1449 AA. AC A0A0E0MP58; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC12G15790.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC12G15790.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC12G15790.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC12G15790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC12G15790.1; OPUNC12G15790.1; OPUNC12G15790. DR Gramene; OPUNC12G15790.1; OPUNC12G15790.1; OPUNC12G15790. DR OMA; ISDDITW; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000026962; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 8. DR SMART; SM01019; B3; 9. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 410 476 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 610 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 637 730 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 849 944 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1002 1098 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1119 1216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1342 1441 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 410 476 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 511 610 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 637 730 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 849 944 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1002 1098 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1119 1216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1342 1441 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1449 AA; 166263 MW; C5962870426DBB7B CRC64; MMNNTPCGHE GSMSYHDNHV RSPSERTSQH ATVLPLVLLD KATDWLKQKG KKRDKTGQTV YTIPKMFAKN VQGQISGVAK LEVLDGKTYD VEIAKEHNEL VFRSGWEVFA SAYELEQDDI LVFGYSGNSH FKVQIFNPRS ISDDNHGQSP RRERLDEQVW HTCMDCITNH YWLHMDDRER YFFKVMMSVS DIKDELFAAN VRGKIPEQDR LEVSDGKIYN VQVTDEQDEL ILRSGWANFA SAYQLKHGDL LVFIHSGHSH FKILIFDPSC TEKEFTCVVA DSTSRVHERS ISRDNHLQSP RSEILGKNYS LCSSRKRPRM NPSDYPSQRP DVPSSEDIKD PMSSSGLQKS KKSHYVLPML YNMTSAQEAE VLALEKKIRP QIPLYITAMD KTIVFSKEYA VRYLDQNRII KLCQSGGSKT WDISLDMDTD DLYALSTGWL DFFHGNLLQE GDICVFEASK SKRGNIPFPP RVLHRVPKRD YFATNFTNLT DKQERKVKNK IRSIQSDIPI FLSVMRSSNC TRQGSLCFSV KYASRYLPHE DQNMRLRLLE TKYKCKAALQ IDKSTNLHKL LKGWGKFVND NKLEVHDICL FQLMKNKKKL TMTVHIIRKG EMEKSHRVCK CKNCVADHYW LHMDDHRKSF IKVMITDFKN GVTIPPKFAR NFRGQMSGTV KLETRNGNTY EVQVAKELNN LVLRSGWERF ASAYELEKGD ILVFIYSGNS HFKVWIYDPS ACEKELPCVI MEKFPRVQQR SISHDNHTQL KRNAKSGKLY VDSSGHSKET SEINPASSPS WKPTERVPSS EELDEPVDLA NVQKATKSFY SIPRMCSMTS AQKAEVDALE KKIKPQIPFY ITVMDKASVT DGLLAISKDY AVNYLLDKNE TIKLCHSGRS MTWDISLDID TDDQYALSTG WLDFIRNNHL QEGDICVFEA SKNKRGVALI FHPLKQSHHP KPPGCVPSTK FPRHGVSKPN YIVSRFTTLS DQLKIKVEAK VQDIQSEVPI FVAIMRESYV KGRTRYLYLN AKYAAKYLPR KNKILRLQLP KKNYKWKTAF LINKVHKLSA GWGKFVDDNK LKLGDICFFQ LMKNKKKLTM MVEVMGEKGC ESCIKWQEHY YREHMDLSRI RFFKLMTGDF AHAISIPEKV AEIFSGQITK GFNLKSPSGE AWRVGVEKVA DELLLMSGWE EFAKAHELQE NDLLFFTCNG HGNGSCAFDV LIFDASGCEK VSCFFTGKRN SYMCKNFNSI GGQIAGKYLS SDSEDTSTPS VLVGSPHKAS TSKKLSGKTK TNPTGKEPED PNCSHCHVIE EKNSDDDEHA DNHYTRFANY LTGEERDEIF SLVSLQPGNP VFVAVLQTAH VRRRNILIIP TTFAARHLER KSHDILLIRP NRKEKWSVKY YYLANTTRGF NCHRWTKFIR ENRLREGHVC IFELMKGARR PTMTVHVIGK ADNRFVLLG // ID A0A0E0MP60_ORYPU Unreviewed; 295 AA. AC A0A0E0MP60; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC12G15810.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC12G15810.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC12G15810.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC12G15810.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC12G15810.1; OPUNC12G15810.1; OPUNC12G15810. DR Gramene; OPUNC12G15810.1; OPUNC12G15810.1; OPUNC12G15810. DR OMA; LETRNGS; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000026962; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33548 MW; 7D31D1AA8B1FF50B CRC64; MEKPHALSKN SVAYQYWLYM DDHEKSFIKV IIDDYIKLIE PYFRGEISET VKLETRNGSV YNVQVVKEVN KFVLRSGWAG FASSYEIEWG DILVFIYNGE SHFKVLIYDP SGCEKELSCV LMSHSPHVQE KSILQDNHTQ SRKNHSVLAA PVKVGKLQRE IHFILHDDNQ AHHMAVCVAE IIPSSEEIEE SANSGSIPRQ AKSFFCLAKM RNMTSEQMAE VDALKEEIQP QIPFYITAMH KASVVDGSLA ISKDYAVKYQ LDKNKTIKLC QHSGSKTWEI NLDINTDVPY ALSTG // ID A0A0E0MP67_ORYPU Unreviewed; 634 AA. AC A0A0E0MP67; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC12G15860.1}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC12G15860.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC12G15860.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC12G15860.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC12G15860.1; OPUNC12G15860.1; OPUNC12G15860. DR Gramene; OPUNC12G15860.1; OPUNC12G15860.1; OPUNC12G15860. DR OMA; EKECESC; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000026962; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 251 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 582 624 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 251 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 582 624 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 634 AA; 73166 MW; 7954329ACA45B40B CRC64; MGEKGCESCR EWQEHYYREH MDVCRIRFFR LMTGDFGHSI SIPEKVAERF SGQITKGFRL KAPSGETWHV GVEKIADELI LMSGWGDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTVKKNSIGG QNAEQYHLSD SEDTSTPSTF LVGSPHKAST SKKLNGKTKT NPRKEPEGPN SSRSHVKREM IEEDKSDEDD EHAGDEHADY YYYSRFANYL TGEEREEIFS LVSLQPGNPV FVTVLQAPQI HRKGLLIVPS GFAADHLDNR SHEILLMRPN KKEKWYVKYY RASTTRGFNC QRWIKFIREN RLREGYICIF ELMKGARRVT MTVHVIGKVD DRFVLLGEEM GEKECESCSK WQKHYYRDHI EVSRICFFRL MTGDFANRIS IPEKFAKDFN GHITKGLNLK ASSCRTWRVG VEKAHELKEN DLLFFTCNGI GSCSFDVLIF HASGCEKVPS VFTEGKGPGN VKKEMIEEEK SDDDDDKHVD YYYSRFANYL TCEEREEIFS LISLQPGNPV FVTVLRAGHV HRKNILIKQK RETVCQILSC KHYQGLQLPS KRYVKYYHAN TTRGFNCHRW FKFISENRLR EEYVCIFELM KGAKRPTMTV HAIGKIDDQF VLLG // ID A0A0E0MPK0_ORYPU Unreviewed; 899 AA. AC A0A0E0MPK0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza punctata (Red rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC12G16920.1, ECO:0000313|Proteomes:UP000026962}; RN [1] {ECO:0000313|EnsemblPlants:OPUNC12G16920.1, ECO:0000313|Proteomes:UP000026962} RP NUCLEOTIDE SEQUENCE. RA Wing R.; RT "Oryza genome evolution."; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:OPUNC12G16920.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OPUNC12G16920.1; OPUNC12G16920.1; OPUNC12G16920. DR Gramene; OPUNC12G16920.1; OPUNC12G16920.1; OPUNC12G16920. DR OMA; GSKQPTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000026962; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000026962}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026962}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99970 MW; 01F451A852ED9AE7 CRC64; MKLSPSASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRYG DPSKQHSATL QYQQTQNLNG GLNSLFASHF LQQMQYQSQQ SPLQVVQQGH CQNTGDSGFL QGQLPQLQLH NTQQLLKEQE LQQQQRQHVL QEQSHQEMQQ QLPSSDHRVA DVASESGSAP QGQSSLLSGS SFYNQNLLEG NSDPSLHLHN NFHNFSSQEA SNLLSLPRSS QLMASDGWPS KRLAIESAVH QEAPSIHPKI EKVNHQGICH FPGTFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDASRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK IYKSGSLGRS LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACEDYSA SHNMQNISGN IASVAPLDY // ID A0A0E0MR54_ORYRU Unreviewed; 319 AA. AC A0A0E0MR54; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G02660.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G02660.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G02660.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G02660.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G02660.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G02660.1; ORUFI01G02660.1; ORUFI01G02660. DR Gramene; ORUFI01G02660.1; ORUFI01G02660.1; ORUFI01G02660. DR OMA; CIDDNTS; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 123 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 180 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 123 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 180 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 319 AA; 35539 MW; E30D627691F02400 CRC64; MEKEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEEELAAM EEDELIHVVQ AAELRLPSST TATRPSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRFRGRDAVT NRAPAAEGAS AGELAFLAAH SKAEVVDMLR KHTYDDELQQ GLRRGSRAQP TPRWAREPLF EKAVTPSDVG KLNRLVVPKQ QAERHFPFPL RRHSSDAAGK GVLLNFEDGD GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRPGDTVAF SRSAAAWGTE KHLLIDCKKM ERNNLATVDD DAHVVVMLFG VDIAGDKTR // ID A0A0E0MR56_ORYRU Unreviewed; 365 AA. AC A0A0E0MR56; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G02680.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G02680.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G02680.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G02680.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G02680.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0E0MR56; -. DR SMR; A0A0E0MR56; -. DR EnsemblPlants; ORUFI01G02680.1; ORUFI01G02680.1; ORUFI01G02680. DR Gramene; ORUFI01G02680.1; ORUFI01G02680.1; ORUFI01G02680. DR OMA; KQTMINA; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 123 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 294 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 123 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 294 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 39280 MW; 0A1EAD4E7986FE6C CRC64; MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSRPAA AAAQQSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRYRGRDAAT NFPGAAASAA ELAFLAAHSK AEIVDMLRKH TYADELRQGL RRGRGMGARA QPTPSWAREP LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL RRAASSDSAS AAATGKGVLL NFEDGEGKVW RFRYSYWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSRSA YGPDKLLFID CKKNNAAAAT TTCAGDERPT TSGAEPRVVR LFGVDIAGGD CRKRERAVEM GQEVFLLKRQ CVVHQRTPAL GALLL // ID A0A0E0MTK7_ORYRU Unreviewed; 467 AA. AC A0A0E0MTK7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G09250.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G09250.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G09250.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G09250.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G09250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G09250.1; ORUFI01G09250.1; ORUFI01G09250. DR Gramene; ORUFI01G09250.1; ORUFI01G09250.1; ORUFI01G09250. DR OMA; KIATAPW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 467 AA; 52408 MW; 9E35719C004C7082 CRC64; MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRMLMPKEVE NEQRTVPGIP QTCNTQNTSN GRTNTTEVPV KGQNKCASYL PKKSSVQAFC GSAMKRAQEI QTKLPAEHPS FVKHMLHSHV VSGFWLGLPA GFCNKYLPKH DTDIVLEDEN GNNHNTNYLG GKQGLSAGWR GFAINHDIKV GDVVVFELVH IIRDKNISPT DRAPGLKSFY ACKKRKISKE ATDNATKPKE DPETTRVSSK VAHDDTQNLV HEAIDGIRFS DSEMSFDDVM SYSNFNIVVD GLVIDCKFPD HQRRTYYELC CAQKSFLHRH LLRQLSLTLV VGVIMETINI AEGIRACGAG TSSQEDFLIW KKTLQSFDLL GMNVAFLLKR VDDLLGLPEQ PRDPSECSKY NELKLERSRA GEKVKALESM MLTVKDVLKK IDAEMEEMES SVRNHDIALR KIATAPW // ID A0A0E0MTK8_ORYRU Unreviewed; 445 AA. AC A0A0E0MTK8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G09250.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G09250.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G09250.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G09250.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G09250.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G09250.2; ORUFI01G09250.2; ORUFI01G09250. DR Gramene; ORUFI01G09250.2; ORUFI01G09250.2; ORUFI01G09250. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 445 AA; 49961 MW; DC0909BF221ACE0A CRC64; MEQKMELVHQ RLALLDSSSG SDRDDDIGPR MLMPKEVENE QRTVPGIPQT CNTQNTSNGR TNTTEVPVKG QNKCASYLPK KSSVQAFCGS AMKRAQEIQT KLPAEHPSFV KHMLHSHVVS GFWLGLPAGF CNKYLPKHDT DIVLEDENGN NHNTNYLGGK QGLSAGWRGF AINHDIKVGD VVVFELVHII RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA HDDTQNLVHE AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA QKSFLHRHLL RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM NVAFLLKRVD DLLGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV RNHDIALRKI ATAPW // ID A0A0E0MTN4_ORYRU Unreviewed; 637 AA. AC A0A0E0MTN4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G09450.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G09450.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G09450.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G09450.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G09450.1; ORUFI01G09450.1; ORUFI01G09450. DR Gramene; ORUFI01G09450.1; ORUFI01G09450.1; ORUFI01G09450. DR OMA; KMSFEGE; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 533 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 60 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 637 AA; 70696 MW; F5203F3C84058049 CRC64; MFQVPYKILC KVVNVELKAE TETDEVFAQI TLQPDPDQEN LPTLPDPPLP EQPRPVVHSF CKILTPSDTS THGGFSVLRR HANECLPPLD MSMATPTQEL ITKDLHGSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLIS GDAFVYLRSE TGEQRVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAI KTNSIFLVYY RPRLSQSQYI VSVNKYLAAS KVGFNVGMRF KMSFEGEDVP VKKFSGTIVG EGDLSLQWSG SEWKSLKVQW DEVTNVNGPE RVSPWEIETC DGTAPAINVP LQSATKNKRP REPSETIDLQ SLEPAQEFWL SGMPQQHEKT GIGSSEPNCI SGHQVVWPGE HPGYGAASSS VCQNPLVLES WLKDFNSSNK GVSPTLSEIS QKIFQVTSNE ARIATWPARS AYQAEEPTSK LSSNTAACGY RTEEVAPNAS KVVEGKKEPA MFRLFGVDLM KCTSISTTTD DKSSVGAGEA SAKGTGSHED SGQLSAFSKV TKEHIAADES PQEIQSHQNY TARTRIKVQM HGNAVGRAVD LANLDGYEQL MNELEEMFNI KDLKQKWKVA FTDDEGDTME VGDDPWLEFC QMVRKIVLYP IEDEKKIEPH PKLLSSANPE QDQKTGF // ID A0A0E0N0J1_ORYRU Unreviewed; 729 AA. AC A0A0E0N0J1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G28960.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G28960.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G28960.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G28960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G28960.1; ORUFI01G28960.1; ORUFI01G28960. DR Gramene; ORUFI01G28960.1; ORUFI01G28960.1; ORUFI01G28960. DR OMA; READPMW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 729 AA; 80357 MW; 4D44716871A15E3B CRC64; MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY LPQGHLEHLG AAPGSGPGAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM REGEDGAACD GEGEDAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL QRPFQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE LRLGVRRAAQ LKNASPFPAL HNQISNTSSL SEVAHAVAVK SIFHIYYNPR LSQSEFIIPY WKFMRSFSQP FSVGMRFKLR YESEDASERR RTGIIIGSRE ADPMWHGSKW KCLVVKWDDD VECRRPNGVS PWEIELSGSV SGSHLSTPHS KRLKSCFPQV NPDIVLPNGS VSSDFAESAR FHKVLQGQEL LGLKTRDGTV NTASQATEAR NFQYTDERSC SINMSNNILG VPRLGVKTPS GNPGFSYHCS GFGESQRFQE VLQGQEVFRP YRGGTLSDAC IRGSGFRQPD GNHAPGAAFK WLAPQGCDHH GITTSVLPQA SSPSSVLMFP QTSSKMPGLE YIYGCLDRNE NSRHFKIGPT QDMTRTDQTL RLWPHLISGK VLDECTRNEK LHSPVSGAEH ESNNKCLNTN GCKIFGISLT EKAQAGDEVD CGNASYHSRL QSLKPQMPKS LGSSCATHFH RLCYRIQDDD RGNADDTRRM LVKFVVMHF // ID A0A0E0N147_ORYRU Unreviewed; 393 AA. AC A0A0E0N147; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G30390.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G30390.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G30390.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G30390.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G30390.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0E0N147; -. DR SMR; A0A0E0N147; -. DR EnsemblPlants; ORUFI01G30390.1; ORUFI01G30390.1; ORUFI01G30390. DR Gramene; ORUFI01G30390.1; ORUFI01G30390.1; ORUFI01G30390. DR OMA; QAAFKKQ; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 136 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 216 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 136 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 216 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 393 AA; 41181 MW; 4EBC1C3DC880E307 CRC64; MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG RVCGGGGGGA GGAGGKLPSS KFKGVVPQPN GRWGAQIYER HQRVWLGTFA GEDDAARAYD VAAQRFRGRD AVTNFRPLAE ADPDAAAELR FLATRSKAEV VDMLRKHTYF DELAQSKRTF AASTPSAATT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTAPAPV EQMAGCKRAR DLAATTPPQA AAFKKQCIEL ALV // ID A0A0E0N1L1_ORYRU Unreviewed; 402 AA. AC A0A0E0N1L1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G31760.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G31760.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G31760.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G31760.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G31760.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0E0N1L1; -. DR EnsemblPlants; ORUFI01G31760.1; ORUFI01G31760.1; ORUFI01G31760. DR Gramene; ORUFI01G31760.1; ORUFI01G31760.1; ORUFI01G31760. DR OMA; SMDMANP; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 181 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 181 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 402 AA; 43409 MW; 0C26DF2DBCE7F67E CRC64; MRGEERWQEQ PALASHPSRA TLRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS ASPPVLPPIK DQGARPPTLA ASAAAASSPP PPPPPPIPPL PPSTSTSAAR PTDMAGVTSK RRSSSASTSS SSGDGAAVSD RPRGVTRKRR SGGRCPRPAA SLRPAAPRPS SHHTAGLRVI LQKELRYSDV SQLGRIVLPK KEAEAYLPIL TSKDGKKSLC MHDLQNAQLW TFKYRYWPNN KSRMYVLENT GDYVRTHDLQ LGDSIVIYKD DENNRFVIGA KKAGDQQAAT VPQVDEHIST LFPIFPIAQV DDYLSPMAPQ VDISAFVPHA DENHEIFDGI LNSLPEIPVA NVRYSDFFDP FDDGMDMANT LNANANQSAS LHVTDDKSGH SLIPNPKSGP HM // ID A0A0E0N1W0_ORYRU Unreviewed; 402 AA. AC A0A0E0N1W0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G32440.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G32440.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G32440.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G32440.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G32440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G32440.1; ORUFI01G32440.1; ORUFI01G32440. DR Gramene; ORUFI01G32440.1; ORUFI01G32440.1; ORUFI01G32440. DR OMA; FTHEANM; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 381 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 381 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 402 AA; 44782 MW; C2A2B8E489CBF8B4 CRC64; MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR TACEREDLMG GGGGDRPRKK RGRPRTAAAS RDAARPKKDS VGKEMVTYRA SPSGGQPLQI VDSSWTPEPG STAVKNEEDA NELPVCELPA SSASPPRHVP EGALDADGGA ARRGAAKTRS LQDDLALASI PPSIRRYKGY VSRRRAVATA ERQRATEIAH AFRSPLPYCV IRMSTMHVYY SFMMRFPTGF SRQHLPRERT DVVLRDPGGK VWSVLYIPNT RDRLSRGWCA FARGNCLEEG DYCVFELVAA AEFRVHIFRV VEPAVPAVRL RRVTVTCGRG PT // ID A0A0E0N1W2_ORYRU Unreviewed; 1023 AA. AC A0A0E0N1W2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G32450.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G32450.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G32450.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G32450.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G32450.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G32450.1; ORUFI01G32450.1; ORUFI01G32450. DR EnsemblPlants; ORUFI01G32450.2; ORUFI01G32450.2; ORUFI01G32450. DR Gramene; ORUFI01G32450.1; ORUFI01G32450.1; ORUFI01G32450. DR Gramene; ORUFI01G32450.2; ORUFI01G32450.2; ORUFI01G32450. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd06223; PRTases_typeI; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR029099; Pribosyltran_N. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR Pfam; PF02362; B3; 1. DR Pfam; PF00156; Pribosyltran; 1. DR Pfam; PF13793; Pribosyltran_N; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53271; SSF53271; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 419 478 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 419 478 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 916 943 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1023 AA; 114331 MW; 985FD073750641EA CRC64; MATAASASAS ASPAAAFGAK TRRPGPSPSP SPASAFARPS PRASAAGRLH ASLHLGGASA TGSSIVSNAS GIHLAAPVLA PLAVPKMTGA VGAHKNVLLF HCEEMRELAE QVVARNDDIE LRSISWRTFA DGFPNLFISN AHTIRGQHVA FLASFSSPSV IFEQLSIIYA LPKLFISSFT LILPFFPTGT SERMEDEGDV ATAFTLARIL SNIPISRGGP SSLVIFDIHA LQERFYFGDS VLPCFESGIP LLKSRLQELP DSDNVVCNKV REGEQRIVRI KEGDPRGRHV VIVDDLVQSG GTLIECQKVL AEHGAAKVSA YVTHGIFPNK SWEKFQPDNG EGPGHGLSHF WITDSCPLTV NAVDHTLIVE MLSFTHPLSL DAQCDWTIGN EIPQGFLIHI PEVDHSTFDA SLPSSAKGTL QNSEGKTWPV ELEKLDGHVF LTTGWAKFVE DNSLREYEFL LFRYDDNMHF MVLPFGLNAC EKVIRSSGSP QGKLPCDIFC CTKRGRDGDR LTEAANSLTP SHSQVLQRTT QGHELISPQS FPDQHEVCGS KDGLDEHLSL NGPMEDDKAN AIAEVMSILD VDKVTVELFC AMLVFYKWNV DAVAEDFDIC RGKPQIQNLF LKHKLHFQFD IVKRKLRKFF PPDDYCSSPI LESRKCSLEE PKLSNQPLQC DLTTEKCRLV DEHDLCNFSQ KKRRKRGSLF QDSKKVKPAH GEVDLCEEPQ HNQGENEGNL DQVNNKETDE EQIERNAVET SESFTRRGCI ESSPASCEVP ACLRINELSL TWKPAEHVNP LEKVLLDIQR DNFMKTISHV QGIIRNHPSD LLTADVITVV VQKEIFKWNC CLKDRDAQRI VNALLEHARK IKEMHNFNSE MRKEEFSAKL KVHLKWQLKE VETIYTSLEL DYKKATSDDN IAFSMLHDKK KKLHNLQDEI TGLQQSLEMK DEMQKLAHQV AEHESVFQKS LMERLRIKEV MKGYEQTLAE VKVQLTSTEV GSIDIEALVK VEMDNMTKEI ELSKESLLNI TFH // ID A0A0E0N2J3_ORYRU Unreviewed; 710 AA. AC A0A0E0N2J3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G34340.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G34340.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G34340.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G34340.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G34340.1; ORUFI01G34340.1; ORUFI01G34340. DR Gramene; ORUFI01G34340.1; ORUFI01G34340.1; ORUFI01G34340. DR OMA; RTHRVTC; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 174 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 710 AA; 77666 MW; 237B5B6A585EFDB3 CRC64; MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPG PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGG IRGEVAVALP PHVACRVVDV ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHFES EDVNERRSGM IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASNGN GRPDSVETEK FPRVLQGQEL MGSRTHRVTC SPQSIDITKS KSFDAWRFLT DTRSCMLGSS TSRLPVQYSG YTHQSVSFGE SIGFPEVLQG QEISQTVPPF QGMLPDACSA KSRYELKNYV CTPATMNGLS SANEGYCLSL STVPPSPPSS LMLYQTGVPQ LELASKNNDK SGNDSQPALR QHKLLSETSW DQFKIGKAST PGNATKPGNG GREVDRTSCR LFGFSLTEKI IPTDKDGEKE VSYETDCQNP RMLDLFGYNC STPEVNARFA RCTSGARRGK SLITSVGSGR // ID A0A0E0N2J4_ORYRU Unreviewed; 696 AA. AC A0A0E0N2J4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G34340.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G34340.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G34340.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G34340.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G34340.2; ORUFI01G34340.2; ORUFI01G34340. DR Gramene; ORUFI01G34340.2; ORUFI01G34340.2; ORUFI01G34340. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 174 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 76036 MW; FD5F3FA52CBDC629 CRC64; MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPG PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGG IRGEVAVALP PHVACRVVDV ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHFES EDVNERRSGM IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASNGN GRPDSVETEK FPRVLQGQEL MGSRTHRVTC SPQSIDITKS KSFDAWRFLT DTRSCMLGSS TSRLPVQYSG YTHQSVSFGE SIGFPEVLQG QEISQTVPPF QGMLPDACSA KSRYELKNYV CTPATMNGLS SANEGYCLSL STVPPSPPSS LMLYQTGVPQ LELASKNNDK SGNDSQPALR QHKLLSETSW DQFKIGKAST PGNATKPGNG GREVDRTSCR LFGFSLTEKI IPTDKDGEKE VSYETDCQNP RMLDLFGYNC STPGALHALC AAPLGI // ID A0A0E0N6G1_ORYRU Unreviewed; 646 AA. AC A0A0E0N6G1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G44300.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G44300.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G44300.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G44300.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G44300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G44300.1; ORUFI01G44300.1; ORUFI01G44300. DR Gramene; ORUFI01G44300.1; ORUFI01G44300.1; ORUFI01G44300. DR OMA; VLYQCTP; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 644 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 549 644 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 646 AA; 72643 MW; 831AAD0BE50F4872 CRC64; MEAKEEHPGY HFPMRQVEKD GQVVRHQLAS MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR TPGDCFGVPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IDAAPDDCKK DKDVLHSECN KVAQKGNNSK GQESGGTKSC VVLAVAANSK KFCITIPPPD QTWLELPRRL PVLPRTKKQA RKILILKDPS MRLWPVLYQC TPKFNGFIAG WADISRENNL REGDTCEFEL CSNSELSFQV LVPNLQ // ID A0A0E0N6L9_ORYRU Unreviewed; 728 AA. AC A0A0E0N6L9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI01G44750.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G44750.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G44750.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G44750.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G44750.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G44750.1; ORUFI01G44750.1; ORUFI01G44750. DR Gramene; ORUFI01G44750.1; ORUFI01G44750.1; ORUFI01G44750. DR OMA; WLTSNRE; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 537 639 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 537 639 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 728 AA; 75930 MW; F67993079A0BF06D CRC64; MDASAGSSAP HSHGNPGKQG GGGGGGGGRG KAPAAEIRGE AARDDVFFAD DTFPLLPDFP CLSSPSSSTF SSSSSSNSSS AFTTAAGGGC GGEPSEPASA ADGFGELADI DQLLDLASLS VPWEAEQPLF PDDVGMMIED AMSGQPHQAD DCTGDGDTKA VMEAAGGGDD AGDACMEGSD APDDLPAFFM EWLTSNREYI SADDLRSIRL RRSTIEAAAA RLGGGRQGTM QLLKLILTWV QNHHLQKKRP RTAIDDGAAS SDPQLPSPGA NPGYEFPSGG QEMGSAAATS WMPYQAFTPP AAYGGDAMYP GAAGPFPFQQ SCSKSSVVVS SQPFSPPTAA AAGDMHASGG GNMAWPQQFA PFPVSSTSSY TMPSVVPPPF TAGFPGQYSG GHAMCSPRLA GVEPSSTKEA RKKRMARQRR LSCLQQQRSQ QLNLSQIHIS GHPQEPSPRA AHSAPVTPSS AGCRSWGIWP PAAQIIQNPL SNKPNPPPAT SKQPKPSPEK PKPKPQAAAT AGAESLQRST ASEKRQAKTD KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE VHLPELKTRD GVSIPMEDIG TSQVWNMRYR FWPNNKSRMY LLENTGDFVR SNELQEGDFI VIYSDIKSGK YLIRGVKVRR AAQEQGNSSG AVGKHKHGSP EKPGVSSNTK AAGAEDGTGG DDSAEAAAAA AAGKADGGGC KGKSPHGVRR SRQEAAAAAS MSQMAVSI // ID A0A0E0N732_ORYRU Unreviewed; 827 AA. AC A0A0E0N732; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G45980.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G45980.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G45980.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G45980.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI01G45980.1; ORUFI01G45980.1; ORUFI01G45980. DR Gramene; ORUFI01G45980.1; ORUFI01G45980.1; ORUFI01G45980. DR OMA; EQNSSSW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 827 AA; 93263 MW; 3BD0E27F3E84FAEA CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHSMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD PAQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSTVYGNSR DRPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATENEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGSV KRDDTRERFR AKIYHYCYCP SQLLPTL // ID A0A0E0N733_ORYRU Unreviewed; 808 AA. AC A0A0E0N733; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI01G45980.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI01G45980.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI01G45980.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI01G45980.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0E0N733; -. DR SMR; A0A0E0N733; -. DR EnsemblPlants; ORUFI01G45980.2; ORUFI01G45980.2; ORUFI01G45980. DR Gramene; ORUFI01G45980.2; ORUFI01G45980.2; ORUFI01G45980. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 808 AA; 90855 MW; 8891BD0691F05BBB CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHSMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD PAQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSTVYGNSR DRPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATENEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGHL PMPNKSDN // ID A0A0E0N9N3_ORYRU Unreviewed; 1141 AA. AC A0A0E0N9N3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G03320.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G03320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G03320.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G03320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI02G03320.1; ORUFI02G03320.1; ORUFI02G03320. DR Gramene; ORUFI02G03320.1; ORUFI02G03320.1; ORUFI02G03320. DR OMA; TEEMPSC; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1008 1092 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 594 624 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1141 AA; 126605 MW; 214FA6F787B2F2CA CRC64; MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK DVDAHVPSYP NLPSKLICLL HGVNLHADPD TDEVYAQMTL QPVNTYGKEA LQLSELALKQ ARPQMEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDIHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVIVVRDEKH QLLLGIRRAN RQPTNISSSV LSSDSMHIGV LAAAAHAAAN SSPFTIFYNP RASPTEFVIP FAKYQKALYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESAAGERRN RVSIWEIEPV AAPFFLCPQP FFGVKRPRQL DDESEMENLF KRAMPWLGEE VCIKDTQNQN STAPGLSLVQ WMNMNRQQSS SLANTAAQSE YLQALGNPAM QNLAADELAR QLYVQNNLLQ QNCIQFNSPK LPQQMQTMND LSKAAIPLNQ LGAIINPQDQ KQDAVSHQRQ QNSIQVIPLS QAQSNLVQAQ VIVQNQMQQQ KPSPTQNPQR INGQRLLLSH QQKDQNLQLQ QQLLLQQKQQ LQQQQQQQQN QQQLNKSLGQ LVNLASQQSK LFDEELQLQI LQKLQQQSLM SQSTSTLSQP PLIQEQQKLI TDMQKQLSNS HSLAQQQMMP QQEIKPSLQA TPLLPTVQQE QQQKLLQKQV SLADVSGVAF QPISSTNVIP KTGGAMIISG ATQSVVTEEM PSCSTSPSTA NGNHFTQSTK NRHCINTERL PPSTAPMLIP TSIDAVTATP LMTKELPKPN NNVKQSVVNS KLPNVAPGPQ NCINHALQTD NLETSSSATS LCPSRTDGLV HQGFPSSNFN QHQMFKDALP DVEMEGVDPS NSGLFGINND NLLGFPIETE DLLINALDSV KYQNHISTDV ENNYPMQKDA LQEISTSMVS QSFGQSDMAF NSIDSAINDG AFLNKNSWPA APLLQRMRTF TKVYKRGAVG RSIDIGRYSG YEELKHALAR MFGIEGQLED RQRIGWKLVY KDHEDDILLL GDDPWEEFVN CVRCIRILSP QEVQQMSLDG DLGSNVLPNQ ACSSSDGVNG WRPRCDQNPG NPSIGPYDQF E // ID A0A0E0NAA5_ORYRU Unreviewed; 908 AA. AC A0A0E0NAA5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G05060.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G05060.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G05060.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G05060.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0E0NAA5; -. DR SMR; A0A0E0NAA5; -. DR EnsemblPlants; ORUFI02G05060.1; ORUFI02G05060.1; ORUFI02G05060. DR Gramene; ORUFI02G05060.1; ORUFI02G05060.1; ORUFI02G05060. DR OMA; DPVRWTN; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 777 861 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100847 MW; 581072770ED932C3 CRC64; MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWMNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLMWLRDSQ NTGFQSLNFG GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AALQNTTKQV SPAMLQFQQP QNIVGRSSLL SSQILQQAQP QFQQMYHQNI NGNSIQGHSQ PEYLQQPLQH CQSFNEQKPQ LQPQQQQQES HQQQPQHQQM QQQKHLSNFQ TVPNALSVFS QLSSTPQSTP STLQTVSPFS QQHNFPDTNI SCLSPSNVSS MHDTLRSFPS EAASDLPGVP RITPVPVSDP WSSKRVAVES TITSRPHDIS SQIENFDLTP SSIPQNSTLA PLPGRECLVD QDGSSDPQNH FLFGVNIDSQ SLLMQDGIPS LHNENSSSTI PYSTSNFLSP SQDDYPLSQT LTTPGCLDES GYVPCSDNAD QVKRPHATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR QESRSLSTGI ASVGSVEF // ID A0A0E0NB80_ORYRU Unreviewed; 110 AA. AC A0A0E0NB80; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI02G07540.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G07540.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G07540.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G07540.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G07540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI02G07540.1; ORUFI02G07540.1; ORUFI02G07540. DR Gramene; ORUFI02G07540.1; ORUFI02G07540.1; ORUFI02G07540. DR OMA; MSAMLNE; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12222 MW; 9172DD66DF9322F1 CRC64; MSAMLNENVP VEFQEAHGYA AREKVVLRMR GRSWTVRLKH TKGRRPRRER AVLRYGWHRF CADNGLAVGD TCFFRALRSA GSGAGDVDDG DGDHVLSVTV HKADGGDPLE // ID A0A0E0NEE5_ORYRU Unreviewed; 267 AA. AC A0A0E0NEE5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI02G16010.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G16010.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G16010.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G16010.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G16010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; A0A0E0NEE5; -. DR SMR; A0A0E0NEE5; -. DR EnsemblPlants; ORUFI02G16010.1; ORUFI02G16010.1; ORUFI02G16010. DR Gramene; ORUFI02G16010.1; ORUFI02G16010.1; ORUFI02G16010. DR OMA; KRRTMKH; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29360 MW; 873B06EC6D414CE7 CRC64; MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC GRLFICCRLG THATFASSST LHHGFSMPPP PARPLVGLQS GMLARDVPSL GQARLHDGNQ DGGGAPSRHV PSSGRRVEAQ LSRVSSRRQR RTMKHSIPEP TIETPPILES MFLIAAPPAV KCLRLFGVNI YVLPVSSSGQ PKQESSP // ID A0A0E0NEE6_ORYRU Unreviewed; 272 AA. AC A0A0E0NEE6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI02G16020.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G16020.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G16020.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G16020.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G16020.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI02G16020.1; ORUFI02G16020.1; ORUFI02G16020. DR Gramene; ORUFI02G16020.1; ORUFI02G16020.1; ORUFI02G16020. DR OMA; PFSGHAT; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 29811 MW; C099F3203EEFA7DB CRC64; MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS TACGRFFICC RCTCMSFLSL PTTSHRIHGS SVLPQPRAAQ AAHHPFSGHA TLCLGNKASD HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP // ID A0A0E0NGE4_ORYRU Unreviewed; 678 AA. AC A0A0E0NGE4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G21640.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G21640.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G21640.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G21640.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0NGE4; -. DR EnsemblPlants; ORUFI02G21640.1; ORUFI02G21640.1; ORUFI02G21640. DR Gramene; ORUFI02G21640.1; ORUFI02G21640.1; ORUFI02G21640. DR OMA; RTQELYH; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 548 641 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 74787 MW; 2FCCB100AE376E53 CRC64; MAGSVVAAAA AAGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKVQWD EPSVVPRPDR VSPWELEPLA VSNSQPSPQP PARNKRARPP ASNSIAPELP PVFGLWKSSA ESTQGFSFSG LQRTQELYPS SPNPIFSTSL NVGFSTKNEP SALSNKHFYW PMRETRANSY SASISKVPSE KKQEPSSAGC RLFGIEISSA VEATSPLAAV SGVGQDQPAA SVDAESDQLS QPSHANKSDA PAASSEPSPH ETQSRQVRSC TKVIMQGMAV GRAVDLTRLH GYDDLRCKLE EMFDIQGELS ASLKKWKVVY TDDEDDMMLV GDDPWPEFCS MVKRIYIYTY EEAKQLTPKS KLPIIGDAIK PNPNKQSPES DMPHSDLDST APVTDKDC // ID A0A0E0NHB7_ORYRU Unreviewed; 1071 AA. AC A0A0E0NHB7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI02G24170.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G24170.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G24170.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G24170.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G24170.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI02G24170.1; ORUFI02G24170.1; ORUFI02G24170. DR Gramene; ORUFI02G24170.1; ORUFI02G24170.1; ORUFI02G24170. DR OMA; RHDMKKN; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 376 469 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1009 1071 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 376 469 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1009 1071 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1071 AA; 121113 MW; 1857030DFD518BF8 CRC64; MDGAVRGQGC VGRLRSFNKT KKKNWNCSDD MRNGDDEEKK YSHHDMKKNL RNDANEEKRK SSDDMRDGDF EEKKKCSRHD MKKNLRNDAN EEKRKSSDDM RDGDDEEKKK CSRQDMKKNL RNDADEEKRK SSDDMRDGDD EEKKKRSRHD MKKNSRNDAD EEKRKRKRKC TDDLKKSVVN DASKEATSHS DWRKNRKAGS GAEQRGKKLL NGDKKAKSRK VTTPFFEKMR KIKMQRTSNQ NGEKNMKSDG DSYKKTVPLS VNKGKMEKDG TNKRTLSNTL VAKERKMRPS DSMEMKMKKK KRDASFVQPD ERTAQTFSTK NKEKKRKAPS TPLKREQKER VASSDNKKET KKACIVAIGN EKKNCRDGKK KKRKAAFAFF KFVRDEFEEL LFIPPAVAPS LKDLIDRHVY LEDSEGKCSK IRLSVVDGSL AFYEGWNSFV SEHCIKWGEF LLFEYTPEST FSVRVFGIDS CERLHFSVKS GGKGAVKKRK ERHTLSDDLI SHYNGQYQDS EDIHDGPNVS GESPRSKEPK ITVDAEIGTR NLVAKSINAA SETQDSERVE SGIGYGSLGA LGNKVRNLSN GECDTRSDSV FCIQEKTRRS EVIIISDEAY STQVDEDTMK QTAPSEASEI HHVTINTQKD LERVVDGVCC ESSVALNNKM GNLILGEPKN KNISPACSTE KTNGSEITPT TGAIPLTQEN IDTVKLNTLS CFEEDRSTTR ESELAAAIPT TSETHDSDKD LGQKHQRNSV QVNSIIAVDK YPNDSEMNIS GNIFRIYEAP AGTRCLEKWK RGIVNGRAAL DDIGQVRPEK TQKAGEKLVG NCGAMGESPV DLRIESDVTD TCLKPILNIP IEELSILDSV SISKCGRSRT EVNHLFNQKG ATVQLQTKKE PLKPTGSSGN RKGDKIAVSV NRVFAHQSEL QIPQQENGNF TSCVTPVALL PAKAELLDLD DHSLQFCIPS TIQKWLVFSY SVVQWMQFVE FMLIAVRAEL PKSLPITCRQ KGRYDRNVVI LKDPMRRLWP VFYHDKPVFV GFTAGWKPFA AANNLQAGDV CKFVKEMDED ELAFQVYITR K // ID A0A0E0NI24_ORYRU Unreviewed; 659 AA. AC A0A0E0NI24; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G26180.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G26180.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G26180.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G26180.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI02G26180.1; ORUFI02G26180.1; ORUFI02G26180. DR Gramene; ORUFI02G26180.1; ORUFI02G26180.1; ORUFI02G26180. DR OMA; ERCVDRQ; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 659 AA; 71513 MW; 03BC8E1461CBFEC1 CRC64; MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS AARVPALVPC RVASVRYMAD PDTDEVFARI RLVPLRAAED GDVEEDGAAA GEEHEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW DQYGGLMRGN ASPCAAAKGR GKVRAEDLVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVASVQVA DPIRWPQSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAINLSSFSP PRKKPRILAY PEFPFEGQLL NPAFPPNPLA HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV GPTSIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS PAATGNSSLN WNTEKGASEG SGSGVIQNSP TDNTSSERLQ WFRENSTVSE LGLEPGQCKV FIESDTVGRN LDLSSLASFE QLYGRLSEMF CIDSAELRSR VLYRGATGEV RHAGDEPFR // ID A0A0E0NJA8_ORYRU Unreviewed; 412 AA. AC A0A0E0NJA8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI02G29620.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI02G29620.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI02G29620.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI02G29620.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI02G29620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI02G29620.1; ORUFI02G29620.1; ORUFI02G29620. DR Gramene; ORUFI02G29620.1; ORUFI02G29620.1; ORUFI02G29620. DR OMA; TSHYAPW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 200 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 200 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 43962 MW; 877D9528F57BAF7E CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS GSSTPFRSDD GAGASGSGGG GGGGGEAEVV EKEHMFDKVV TPSDVGKLNR LVIPKQYAEK YFPLDAAANE KGLLLNFEDR AGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KRLDAGDTVS FSRGIGDEAA RHRLFIDWKR RADTRDPLRL PRGLPLPMPL TSHYAPWGIG GGGGFFVQPS PPATLYEHRL RQGLDFRAFN PAAAMGRQVL LFGSARIPPQ APLLARAPSP LHHHYTLQPS GDGVRAAGSP VVLDSVPVIE SPTTAAKRVR LFGVNLDNPH AGGGGAAAAG ESSNHGNALS LQTPAWMRRD PTLRLLELPP HHHHGAESSA ASSPSSSSSS KRDAHSALDL DL // ID A0A0E0NQ33_ORYRU Unreviewed; 131 AA. AC A0A0E0NQ33; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G04510.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G04510.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G04510.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G04510.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G04510.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G04510.1; ORUFI03G04510.1; ORUFI03G04510. DR Gramene; ORUFI03G04510.1; ORUFI03G04510.1; ORUFI03G04510. DR OMA; RRCGRLH; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 131 AA; 14305 MW; BA59A71C40111611 CRC64; MEGGQAVLGT AGASAARRCG RLHGCRRARG GTASSEQCSV PTRVAETFAV QFSERYINKY IGSPIDDLMV SMAGTTQSYQ MRLKRSKDSS AMLTTGWNQL IDAKAFDEGD VCLFHFKEVD DVLVLKVHVL K // ID A0A0E0NQP1_ORYRU Unreviewed; 237 AA. AC A0A0E0NQP1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G06050.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G06050.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G06050.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G06050.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G06050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0NQP1; -. DR EnsemblPlants; ORUFI03G06050.1; ORUFI03G06050.1; ORUFI03G06050. DR Gramene; ORUFI03G06050.1; ORUFI03G06050.1; ORUFI03G06050. DR OMA; HIPEVKY; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26569 MW; C72DB584F9E94066 CRC64; MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK // ID A0A0E0NRG3_ORYRU Unreviewed; 272 AA. AC A0A0E0NRG3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G08170.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G08170.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G08170.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G08170.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G08170.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G08170.1; ORUFI03G08170.1; ORUFI03G08170. DR Gramene; ORUFI03G08170.1; ORUFI03G08170.1; ORUFI03G08170. DR OMA; WNVEINR; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 30788 MW; B1200C5F22D7D787 CRC64; MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRLHH DAAGTGSSSS SDSSDAAAAA AVATAAAEGV GDVALSQFAV TLRQCNLEDK QAQYLNVPME FQEAHEYARR EKVVLRMRGE AWTVRLKHSR RERGQRTAFR YGWHRFCVDN GLAVGDTCFF RVLREGDLRR GGAADDHVLK VAVRKADGTT LE // ID A0A0E0NYB6_ORYRU Unreviewed; 422 AA. AC A0A0E0NYB6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G27180.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G27180.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G27180.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G27180.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G27180.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G27180.1; ORUFI03G27180.1; ORUFI03G27180. DR Gramene; ORUFI03G27180.1; ORUFI03G27180.1; ORUFI03G27180. DR OMA; CDDTAES; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 321 415 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 321 415 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 48712 MW; 660BF8A0A61FB6FE CRC64; MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD CEKERTVPLN MNLLSQVISF CYAEVHFPHK SVTVTLQRPC KSKKWHPRFY KRKDARMNIL RGSWVEFVKD NRVQEQDICV FVPTKDARRN FTFTVHLLRV AAAYSRGGTG VDRAGSSLGR TDVKSASEIS IKEEPIDQEE NVSSRNRNGV SDESEEDEDS EGPAHPPYIV PCKSRLSRLQ KKIVEEKVRS FQSKFPVYVA IMKKSNVERS ASRCQLELGA RFAAAVHLPD RRQTVVLQRR GERWATVMQI RSGTRRLLIS GWHRFVRDNR LRVGDICLFE FKTHERWRLT MAVHAIFREQ CC // ID A0A0E0NYB7_ORYRU Unreviewed; 908 AA. AC A0A0E0NYB7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G27190.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G27190.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G27190.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G27190.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G27190.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G27190.1; ORUFI03G27190.1; ORUFI03G27190. DR Gramene; ORUFI03G27190.1; ORUFI03G27190.1; ORUFI03G27190. DR OMA; GASHESP; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 448 548 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 577 670 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 806 904 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 448 548 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 577 670 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 806 904 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 101943 MW; 9D807F962713EB98 CRC64; MGAPRRKSCS ALGASNGDAL GHRNTHRKKS CACCKEYLEH LGGKMRCFLR RMAADSMHSM IMPDRFVSHF GGKIPGTIKL ESPNGILYVV EVTECMNKTL LQCGWEAFVD AHNIKEGESL LFRHIENSRY EVLILDSDDC EKVFSCAGIR NGSCVQDKTV DPVDSSGSSS NDTTQSSRSR NTENLTAMCS SSEKSGEDSP SGYEFHESVE PQTPSGSDYV LSRRTYLSEA QKERVVTHIQ DIQPEITVFV AVMKKCNLQS PAPYLVISSR YASVHFPRET ATITLQRPSK RKKWYPRFYK RIDKSDHMLR GQWQNFVHDN CLQEEDICLF VPTKGGRNFA FTVHLLQAEV THSRDGTDVH KIGSSQNKRN SKMASQVHIK EAPGGDVSSE SNKHGVSHES LESEDSDGPS EPPYISSMRR RLSQLQKKTV EEKVRAIQSE IPICVATISK LAGSGGKGKF RGLELSSRYA ASYLPDKNHQ TLVLQCKGMI WQINLVVRRR YTKGKRWFLT AGWRKFAHDN RLRVGDFCLF ELKKKKKLTM EVHIISNLQL HMAGGGSRMK KSCACCKRYL EHLGGKMSCF LIRMTTDSMH SMIIPDRFVN HFGGKIPGTI KLESPNGILY VVEVTECMNK TVLQCGWEAF VDAHHIKVGD SLLFRHIENS CFEVMILDSD GCERVFSCAG IKTSSCVHDK TVDPVDTSGR SSDDTAQPSR SERFARCQRD TSNDRRNTAS LTAVSSSSEE SENVSLKSNR NGVSDESQES EDSEGPAGPP YILSWKSKSR LSSLQKKIIK EKVRSIQSEV PIYVAIMNKS NIGLTSSPCQ LELGARYAAA VHLPDRRQAV VLQRMGQRWD TVMQTKSGRC TTRRFLINGW SRFVRDNRLC VGDICLLELK KHESKLTMTV HTIFSQQS // ID A0A0E0NYB8_ORYRU Unreviewed; 1169 AA. AC A0A0E0NYB8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G27200.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G27200.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G27200.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G27200.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G27200.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G27200.1; ORUFI03G27200.1; ORUFI03G27200. DR Gramene; ORUFI03G27200.1; ORUFI03G27200.1; ORUFI03G27200. DR OMA; SFMQPSY; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 344 444 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 608 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 668 761 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 855 955 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1065 1166 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 344 444 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 511 608 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 668 761 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 855 955 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1065 1166 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1169 AA; 132912 MW; 33378A00E1D44838 CRC64; MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL NELARPRGRM LIALRTTSLK QRYIRIPEFL MQFTCMAGQG SQKKKSCDWS KRYVDHLNGK MKCFHLQMSA NFGHSMTIPN KFLDHFGGTL SRTIELVSPK GIMYIVKVTE HMNKTILQCG WEAFVDAHHI EENDSLLFRH IENSRFEVLI LDSDGCEKVF TCAGIKKTSS VQERNAAPVD ISRSTHDETT QSSGSKKFVR CQRASDSQRG KTAKLAETSS SGESGEEGTD SSTSEDESSY ELDDPQMPPG RNYVLSRWTS LSEAQEEKVD MLVQDIQPEI PVFVAIMKHS NVNSRRACLV IPKRYASAHF PLESQTITLQ RQGKNKKWYP MFYIRKDGSG YMLYGCWKNF VRDNHVKEGD MCIFHLTKFT GGEFGATVHL LRETKSGSLG SFHTSHKRFD LRDGRTWPKV TGVRRVSSRP YLTADRVSLT EEQVRKVEEV VHSIQSEGPM YVSIMNKSNV GTDGLYIIIF GRQFATRYLP EGEQTLTLLM TGKSNAWQVK MRPRSGDAQM ITTGWRHFVH DNHLQIEDIC LFQLMNDETN QISDLASPGA SLGLGKLGTH QASSSTSGPE KRNCCSGKSP FKTTIPNPEM KKYCDCCKRY VDHSNGKMKC FHRQMSANFE HSMIIPNKFL DQFGGKISRT VELESPKGNV YVVKVSKHMN KTVLQCGWEA FVDAHQIEEN DSLLFRHIEN SRRASGVQER NADPIDVSSS THDDTVQSSG GERFARSESG SDSQHREEAK ESSSSEHESS YDLVDPQIAP MPGYVLSRGT NLSQAHEEKL DMLVQEIRPE IPLYVTTMKH SNVNSHHASL VIAKHYACAY FPHTSQTITL KWHGKNRKWH PKFYIRKDQV GYILHGRWID FVRHNHVKEG DICIFHLKNF NGRKFRATVH LLRETIPHSF GALHIPKRFE SRNGRMRLKM TDDRRVSSTE CRRGTMEPST TNVKKEADNE QCNNGQGKRQ EPLNFDVSVG SSKPYLTADR VSLTEEQFMK VEENVHSIQS EGPIYVSIMN KSNVGTDGLY IITLGRQFAI RYLPEGEQTL TLLTTGTGKA WQVKMRPRSG DARMFTLGWR DFVRDNRLQT EDICLFQLMK NSERGLAMKV HIIRHNERS // ID A0A0E0NYB9_ORYRU Unreviewed; 1164 AA. AC A0A0E0NYB9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G27200.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G27200.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G27200.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G27200.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G27200.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G27200.2; ORUFI03G27200.2; ORUFI03G27200. DR Gramene; ORUFI03G27200.2; ORUFI03G27200.2; ORUFI03G27200. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 344 444 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 608 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 693 756 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 850 950 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1060 1161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 344 444 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 511 608 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 693 756 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 850 950 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1060 1161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1164 AA; 132346 MW; AB0C02BB784C5E48 CRC64; MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL NELARPRGRM LIALRTTSLK QRYIRIPEFL MQFTCMAGQG SQKKKSCDWS KRYVDHLNGK MKCFHLQMSA NFGHSMTIPN KFLDHFGGTL SRTIELVSPK GIMYIVKVTE HMNKTILQCG WEAFVDAHHI EENDSLLFRH IENSRFEVLI LDSDGCEKVF TCAGIKKTSS VQERNAAPVD ISRSTHDETT QSSGSKKFVR CQRASDSQRG KTAKLAETSS SGESGEEGTD SSTSEDESSY ELDDPQMPPG RNYVLSRWTS LSEAQEEKVD MLVQDIQPEI PVFVAIMKHS NVNSRRACLV IPKRYASAHF PLESQTITLQ RQGKNKKWYP MFYIRKDGSG YMLYGCWKNF VRDNHVKEGD MCIFHLTKFT GGEFGATVHL LRETKSGSLG SFHTSHKRFD LRDGRTWPKV TGVRRVSSRP YLTADRVSLT EEQVRKVEEV VHSIQSEGPM YVSIMNKSNV GTDGLYIIIF GRQFATRYLP EGEQTLTLLM TGKSNAWQVK MRPRSGDAQM ITTGWRHFVH DNHLQIEDIC LFQLMNDETN QISDLASPGA SLGLGKLGTH QASSSTSGPE KRNCCSGKSP FKTTIPNPEM KKYCDCCKRY VDHSNGKMKC FHRQMSANFE HSMFLDQFGG KISRTVELES PKGNVYVVKV SKHMNKTVLQ CGWEAFVDAH QIEENDSLLF RHIENSRRAS GVQERNADPI DVSSSTHDDT VQSSGGERFA RSESGSDSQH REEAKESSSS EHESSYDLVD PQIAPMPGYV LSRGTNLSQA HEEKLDMLVQ EIRPEIPLYV TTMKHSNVNS HHASLVIAKH YACAYFPHTS QTITLKWHGK NRKWHPKFYI RKDQVGYILH GRWIDFVRHN HVKEGDICIF HLKNFNGRKF RATVHLLRET IPHSFGALHI PKRFESRNGR MRLKMTDDRR VSSTECRRGT MEPSTTNVKK EADNEQCNNG QGKRQEPLNF DVSVGSSKPY LTADRVSLTE EQFMKVEENV HSIQSEGPIY VSIMNKSNVG TDGLYIITLG RQFAIRYLPE GEQTLTLLTT GTGKAWQVKM RPRSGDARMF TLGWRDFVRD NRLQTEDICL FQLMKNSERG LAMKVHIIRH NERS // ID A0A0E0NYC4_ORYRU Unreviewed; 920 AA. AC A0A0E0NYC4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G27250.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G27250.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G27250.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G27250.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G27250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G27250.1; ORUFI03G27250.1; ORUFI03G27250. DR Gramene; ORUFI03G27250.1; ORUFI03G27250.1; ORUFI03G27250. DR OMA; DICREYA; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 102 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 242 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 341 434 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 622 715 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 825 920 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 102 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 242 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 341 434 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 622 715 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 825 920 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 920 AA; 105823 MW; B05A791BB4578A91 CRC64; MRVENKRGNR SWGTDAKRTH PNSIFNQLVR YGYIGTGFPD MNCSLTWSLI GGPSLPSFFP SAHLLLSLAL FFFLCIQSNH RMSKSGCERC RGRGFWDTDD QDTYFFKVMI GGFRRQMTIP YKFAENFRDQ IQGTIKLKAR NGNTCSVLVD KCSNKLVLTK GWAEFANSHD IKMGDFLVFR YTGNSQFEVK IFDPSGCVKA ASHITEHASS SEDDQETPTA EVHRMKVEEM VRAIHSNHPV FVAVMKKSNV TRQPCYVAIS RKYANEYFPG GDQMLTLQRH GKRWQVKFCI SKRKLRMLSK GWRKFTRDNE LQGIVDCMKL TRCGQKMRKL NTRSTARDDQ EKYFFKVMIG DFHKRMTIPD KFARHFKGVI SKTIKLEPRS GYTFDVQVTK KLNILVLGSG WESFVNAHDL NMGDFLVFKY NGDFLLQVLI FDPSGCEKST SCSMENAIDH VGQGWKEHND ISTSYHDQPK GNKHWMQKDS SSKGNKIGNT RSSNTPSKFS GCILPRGTCL PVVQEKKMKE KIQAIHSKTP MYGNVMTKCN VSGSPCVLEI TQLYDDAYLP FNNGQELMLR HRDKSWKVRF YRFKNKSRKL TQASSLYKMR RPGARCREGH AHFNGNHIDG QYKNFFKVMI GRFRERMIIP NEFLQYFRGK IPRTIKLQLR DGCTYDVQVT KNLGKISLQS GWKAFVTAHD LQMGDFLVFS YDGISKLKVL IFGPSGCEKV HSRPTLKNAT HCGEKWEEPL HISSNSHDLP VKSPQNVSKS EKQWDSSEQE NDTANIEEVA LQGDDLQGHP VLNCILPKHT RLTDMQKQQL ESKVGAIHSE IPIYGCILRK SRVHGKSQTV DICREYADVY LPFKELNMTL QRHGKNWEVL CRTKDTRTKR LSTGWSRFAQ ENNLQVGDIC LFELLKKKEY SMNVHIIPKK // ID A0A0E0NYD2_ORYRU Unreviewed; 173 AA. AC A0A0E0NYD2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G27290.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G27290.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G27290.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G27290.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G27290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G27290.1; ORUFI03G27290.1; ORUFI03G27290. DR Gramene; ORUFI03G27290.1; ORUFI03G27290.1; ORUFI03G27290. DR OMA; WARFARD; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 173 AA; 19913 MW; 6F4BF8AEE8BA5FAA CRC64; MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS RTDLTRLQKN ILIEKVKAIN SETPIYGYVM NNSSINGIPC TVEISKKYAD VYLPFEDGTV VLQHHGKSWN VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII RRK // ID A0A0E0NYD4_ORYRU Unreviewed; 756 AA. AC A0A0E0NYD4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI03G27310.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI03G27310.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI03G27310.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI03G27310.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI03G27310.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI03G27310.1; ORUFI03G27310.1; ORUFI03G27310. DR Gramene; ORUFI03G27310.1; ORUFI03G27310.1; ORUFI03G27310. DR OMA; PTRFANN; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 424 502 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 634 748 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 424 502 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 634 748 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 756 AA; 84301 MW; 8A54970B65544430 CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE VVNLKSPSGK TWSIGVAYSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSSPCIIEM KWGRNQSRLC IIDMYAAMGI IVVTTNIGTY MHERACLAEQ DHREEKKEGD DEDEDEDEDE DEDKDGEDRY YFCRHGGRVT EYNLSKGDKE EISRVPVPVE PGNPVLVKVI HASHLLSSRY STVGVSPEFA GRYLGPAMAR EVVMERGGGG GGGDQWHVRF VRRESSRGFH GTGWRRFARD NGLLAHDVCL FELRLVDGAG AGDRLRRRPR PTMAVHVLRR ARTAAFARSG KNTATGAIWP TTTVPARFAN NFNGHISEEV NLRSPSGETW SIGVANSDAG ELVLQPGWKE FVDGNGIEEG DCLLFRYSGV SSSFDVLIFD PSGCEKASPH FVGSHGFGRA ENSAGAEQGG RNGRRTPPIV DGDNGHRHHL EMTLHRNSCR SIPRACKRSL FSDETEAKEN DGEDEDVVAA AEGGRYGEYY FSRHGRVAEY NLREEDREEI SRVPVPVQPG NPVFVQVIHS SHVRSSKYCI VGVSPEFAGK YLGAVEREVV LERASRGGEW HVPFVHRQNT RGFYGAGWRQ FAGDNRLVAH DVCLFELTMV DAAASGGGNR RRRWSRRPTM TVHVLRRVRG RFVLLR // ID A0A0E0P7L3_ORYRU Unreviewed; 431 AA. AC A0A0E0P7L3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G09410.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G09410.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G09410.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G09410.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G09410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G09410.1; ORUFI04G09410.1; ORUFI04G09410. DR Gramene; ORUFI04G09410.1; ORUFI04G09410.1; ORUFI04G09410. DR OMA; FVRDYIT; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 324 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 324 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 46722 MW; F9D4001F12BBB963 CRC64; MGSRGDHGGG GGGRGAARAT QLKVLVPSSF RKMRICDELA AQLGVGVGGG GAPRAATARV ASPLGKAWDV GVVRDGDGRA FLGRGWAEFA AAHGLGVGWF VVLRHGGGGG GGVLAVEAFD TTCCLRVFGA PPAEAGRATD TSRKPQFLTV LLPGIMDKMR IPDKFVRDYI TGENLNSNMA IILSPLGKSW RVELDKDQSG VFLGGGWLQL LSFHGISRGD VVIFRYEGNL VFKISVFGPN GRQKDFKAKG ISIHQGTGEQ QEAPSFSRRK CNNKKKSRFG EDDGNQQEMP CSRKGSGNKG RTSDRETKRM RKTRSVYEIG PRSWIKKEIN EYVLERCILS LARTFCESIG LAEESSITLM MVDTTSTQGD QGGSSSSSRS WEVTGRRYKD ACYLLGAGWR RFCEDNGVRS GDVCVFTVLD TTLWRVDIER C // ID A0A0E0P7L5_ORYRU Unreviewed; 429 AA. AC A0A0E0P7L5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G09430.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G09430.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G09430.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G09430.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G09430.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G09430.1; ORUFI04G09430.1; ORUFI04G09430. DR Gramene; ORUFI04G09430.1; ORUFI04G09430.1; ORUFI04G09430. DR OMA; QNGNNEH; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 321 427 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 321 427 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 429 AA; 47022 MW; B9AC920565C6DE2B CRC64; MPGDHAGAGA AVGAAKAMQL KVLMPSSFHK MRISDELAAD LLGERGDGGG GGGGAPRRAA RVVSPVGKVW DVEVGRDDDG DGGGAFLGRG WAEFAAAHGL GMGWFVVVRH EGGGVLTVKL FDTTCCLWDF GARPAGNPKD YLHAKFKFII LVFVLFGEIR RIPAKFVQHY IAEEHLNIHM ASILSPLGKF WRIELEKDEL GMFFKGGWLQ FLSFHGISPG DVVLLRHEGN LVFKIKVFGI NGCKKDLKTK DDITIQQSAR NQHETPSFST RKCNKNSRFG EDCKNQLQEI PCSIKGSRKK GRETKRPKKS KSIYEIGPPS WIKKEISNYM LENGNISLPG IFCKSIGLVE ETTITLMINS SRGRSSSSSS RSWEVACSVN KNGYGCCNLL PSGWKRFCQA NGLLVGDVCT FSVVEATLWH VAIDRVERS // ID A0A0E0P899_ORYRU Unreviewed; 212 AA. AC A0A0E0P899; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G11550.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G11550.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G11550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G11550.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G11550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0P899; -. DR EnsemblPlants; ORUFI04G11550.1; ORUFI04G11550.1; ORUFI04G11550. DR Gramene; ORUFI04G11550.1; ORUFI04G11550.1; ORUFI04G11550. DR OMA; HERVEFR; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 22326 MW; A49FD63B8CEAE1F5 CRC64; MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID // ID A0A0E0P9K5_ORYRU Unreviewed; 497 AA. AC A0A0E0P9K5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G14900.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G14900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G14900.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G14900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G14900.1; ORUFI04G14900.1; ORUFI04G14900. DR Gramene; ORUFI04G14900.1; ORUFI04G14900.1; ORUFI04G14900. DR OMA; KRWQVVY; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 497 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 497 AA; 55327 MW; 611D9C86EA6152D2 CRC64; MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFDVDSDQI SQPSNGNKSD APGTSSERSP LESQSRQVRS CTKVIMQGMA VGRAVDLTKL NGYGDLRSKL EEMFDIQGDL CPTLKRWQVV YTDDEDDMML VGDDPWE // ID A0A0E0PBN0_ORYRU Unreviewed; 687 AA. AC A0A0E0PBN0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G20430.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G20430.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G20430.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G20430.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G20430.1; ORUFI04G20430.1; ORUFI04G20430. DR Gramene; ORUFI04G20430.1; ORUFI04G20430.1; ORUFI04G20430. DR OMA; DEPFCAF; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 601 681 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 687 AA; 74279 MW; 04A064C90C2D924F CRC64; MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEEAGVS DANNGGGFSV PRFCAETIFP ELDYSSEPPV QSVCAKDVHG VEWTFRHIYR GTPRRHLLTT GWSPFVNKKQ LTAGDSIVFM RDEGGNIHVG LRRAKRGFCS IGGDDESLSS IPGWDQYRGL MRRNATATAT GGRTPPKGKV PPENVLTAAT RATTGQPFEV LYYPRASTPE FCVRAAAVRT AMAVQWCPGM RFKMAFETED SSRISWFMGT VAGVQASDPV RWPQSPWRLL QVTWDEPELL QNVKRVCPWL VELVSSMPNL HLPSFSPPRK KPRNPPYAEL PLEGQIFTGP VFPPNPMAHD HHHHHGFPFL PFPDSSAQPA GIQGARHAQF ASPFPEFHIG NLQPNLMLYA GIRLPPADRA APAPRPPRII ISTDLTIGSP GKPDDAACSP SSGGKKIDDT KPRGFLLFGQ AILTEEQIKN GNSDGRPASP NWDAEKAPNT SEGSDSGVTQ GSPTKNTTPS WSLPYFGGNN ISRASEYELN PGQCKVFVES ETVGRSLDLS ALSSFEELYA CLSDMFSIGS DELRSHLVYR SPAGEVKHAG DEPFCAFVKS ARKLRILTDA GSDNLGD // ID A0A0E0PD60_ORYRU Unreviewed; 317 AA. AC A0A0E0PD60; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G24570.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G24570.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G24570.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G24570.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G24570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G24570.1; ORUFI04G24570.1; ORUFI04G24570. DR Gramene; ORUFI04G24570.1; ORUFI04G24570.1; ORUFI04G24570. DR OMA; DFRNINA; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 194 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 194 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 317 AA; 32856 MW; A1F4666E389D9218 CRC64; MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAX DGDSSAPALA TAAVATSASS PTPHYGAPPE PLTAGLPMVV DSVPHVNNPA AASKRVRLFG VNLDNPHPDG GQSSSGHDAN ALSLRMPGWQ RPAPLRSLEL PPHMPAGAAG AESSAASSPS SSSSSKREAH SSLDLDL // ID A0A0E0PFA6_ORYRU Unreviewed; 900 AA. AC A0A0E0PFA6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G30260.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G30260.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G30260.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G30260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G30260.1; ORUFI04G30260.1; ORUFI04G30260. DR Gramene; ORUFI04G30260.1; ORUFI04G30260.1; ORUFI04G30260. DR OMA; DYDPMRW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 797 881 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 900 AA; 99359 MW; 8E4D69B9EA0D3959 CRC64; MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RTSPSPFVIP VARYNKATYM QPSVGMRFAM MFETEESSKR RYTGTVVGIS DYDPMRWPNS KWRNLQVEWD EHGYGERPER VSIWDIETPE NTLVFPSSTL NSKRQCLPGY GVSVPGMEIG SANMSSFPRA QGNPYGSLQH IPAVGSELAI MLLNQSGQTL GSPLSFHQSS YSSIIQNVKQ NYIPPLTVST SACLTKQESL PSDDAQHQFH MANMQNGDLE GSEVQPVIDS ISESKLNATS RDPRNTDSYT SRSTSEQNSK GEPRGKTRRS KKGLPHKTVS EKSDLSSAPS WICDNQQVGL ESKLVGCDEQ VNCGNIEDSS GALTQGNFVG QPHGHQVEQK GVLSPPKVES SKSPDGGKSV NSFPNQGCFS QFIDGLDWMT QPSYYQDSNV IQPAGVSENI FSSSADIPPS MIADTMETFQ ASCLSDCLPN SIQEFISSPD LNSLTFLSPD MQNLEVQLQH DGSNLPSTSN SFVQMSFSEE SASQSANLSG LHMESTHRSI NTTSCSQPMS TGGFDAGMYS KLPRLKESQI LSLPEIHTNS MGTSACSMDA TEYSLDRSAK PMKPPVRTYT KVQKQGSVGR SIDVTGFRNY HELRSAIACM FGLQGKLEHP GSSEWKLVYV DYENDVLLVG DDPWEEFINC VRCIRILSPS EVQQMSENGM HVLNDCIQAA // ID A0A0E0PFJ0_ORYRU Unreviewed; 819 AA. AC A0A0E0PFJ0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G30870.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G30870.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G30870.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G30870.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G30870.1; ORUFI04G30870.1; ORUFI04G30870. DR Gramene; ORUFI04G30870.1; ORUFI04G30870.1; ORUFI04G30870. DR OMA; WLEKKCL; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 720 804 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 819 AA; 91043 MW; 7B09334D0A9BAA0E CRC64; MSSSTAASIG PPQPPPPPAP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAASTNKEVE GHIPNYPNLP AQLICQLHDV TMHADVETDE VYAQMTLQPL NPQEQNDAYL PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI HDIEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLSK YIKAVFHTRI SVGMRFRMLF ETEESSVRRY MGTITEVSDA DPVRWPSSYW RSVKVGWDES TAGERPPRVS LWEIEPLTTF PMYPSLFPLR VKHPWYSGVA SLHDDSNALM WLRGVAGEGG FQSLNFQSPG IGSWGQQRLH PSLLSSDHDQ YQAVVAAAAA SQSGGYLKQQ FLHLQQPMQS PQEHCNLNPL LQQQILQQAS QQQIINPDAQ NIQTMLSPSA IQQQLQQLQQ MQQVQNDQKQ KIQPDQSYQV PTSAVLPSPT SLPSHLREKF GFSDPNANSS SFITSSSSDN MLDSSFLQGS SKAVDLSRFN QPVASEQQQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK DGSVENKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVS DGNLSTIPSG STYLQNAMYG CLDDSSGLLQ NTGENDPATR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK QGNDPRYLS // ID A0A0E0PFQ3_ORYRU Unreviewed; 433 AA. AC A0A0E0PFQ3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G31260.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G31260.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G31260.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G31260.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G31260.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G31260.1; ORUFI04G31260.1; ORUFI04G31260. DR EnsemblPlants; ORUFI04G31260.2; ORUFI04G31260.2; ORUFI04G31260. DR Gramene; ORUFI04G31260.1; ORUFI04G31260.1; ORUFI04G31260. DR Gramene; ORUFI04G31260.2; ORUFI04G31260.2; ORUFI04G31260. DR OMA; GFVKQHG; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 297 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 297 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 48683 MW; CA4FACE2509F272D CRC64; MADTRGSTSS GGGDDRGREG HDDFTGGGQY NRYHRILEAV PSPLVRRENV VHHQYPTGLI HHPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN FQDLRPMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTDAKK AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASDPSSMSHN SANSTIRFNC REYRVILRKE LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE ECGFAISLLT KKT // ID A0A0E0PFQ4_ORYRU Unreviewed; 335 AA. AC A0A0E0PFQ4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G31260.3}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G31260.3, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G31260.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G31260.3}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G31260.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G31260.3; ORUFI04G31260.3; ORUFI04G31260. DR Gramene; ORUFI04G31260.3; ORUFI04G31260.3; ORUFI04G31260. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 199 301 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 199 301 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 335 AA; 37654 MW; 2CAB2E70D4628B9B CRC64; MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPEFLGNRHL HGVDIAGAPP AKATSPATAG GLLTNTAPAT VSQIHARCRR RQIYRCCGLL PRAPPPSDPC AFTRAAITAA RSARGLLSHL YGGLVFWLVG KRKLGEKRER KRKVVAEMDP PIVFRRSDME SEKNDDNPDQ TPVSEPPSMN QNGENLIIRF NCREYRVILR KELTNSDVGN IGRIVMPKRD AEAHLPALHQ REGVTLKMDD FKFETTWNFK YRFWPNNKSR MYVLESTGGF VKHHGLQTGD IFIIYKSSES GKFVVRGEKA IKPNAIMPVV DCSCKNELNK SEECGFTISL QTKKT // ID A0A0E0PFQ5_ORYRU Unreviewed; 269 AA. AC A0A0E0PFQ5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G31260.4}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G31260.4, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G31260.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G31260.4}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G31260.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G31260.4; ORUFI04G31260.4; ORUFI04G31260. DR Gramene; ORUFI04G31260.4; ORUFI04G31260.4; ORUFI04G31260. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 269 AA; 30524 MW; 2AA9834BE468953F CRC64; MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPGFQTNFRM DQAFVPASSP FPPVSSSSHS FSSAKISNGP TYTKKAKKSN VKDPPIVFRR SDMESEKNDD NPDQTPVSEP PSMNQNGENL IIRFNCREYR VILRKELTNS DVGNIGRIVM PKRDAEAHLP ALHQREGVTL KMDDFKFETT WNFKYRFWPN NKSRMYVLES TGGFVKHHGL QTGDIFIIYK SSESGKFVVR GEKAIKPNAI MPVVDCSCKN ELNKSEECGF TISLQTKKT // ID A0A0E0PFQ6_ORYRU Unreviewed; 269 AA. AC A0A0E0PFQ6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI04G31260.5}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G31260.5, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G31260.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G31260.5}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G31260.5} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G31260.5; ORUFI04G31260.5; ORUFI04G31260. DR Gramene; ORUFI04G31260.5; ORUFI04G31260.5; ORUFI04G31260. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 269 AA; 30493 MW; 12089C616A98834A CRC64; MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPGFQTNFRM DQAFVPASSP FPPVSSSSHS FSSAKISNGP TYTKKAKKSN VKDPPIVFRR SDMESEKNDD NPDQTPVSEP PSMNQNGENL IIRFNCREYR VILRKELTNS DVGNIGRIVM PKRDAEAHLP ALHQREGVTL KMDDFKFETT WNFKYRFWPN NKSRMYVLES TGGFVKHHGL QTGDIFIIYK SSESGKFVVR GEKAIKPNVI MPIVDCSCKN DLNNSEECGF AISLLTKKT // ID A0A0E0PG54_ORYRU Unreviewed; 360 AA. AC A0A0E0PG54; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI04G32360.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI04G32360.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI04G32360.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI04G32360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI04G32360.1; ORUFI04G32360.1; ORUFI04G32360. DR Gramene; ORUFI04G32360.1; ORUFI04G32360.1; ORUFI04G32360. DR OMA; TNGHNQD; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 65 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 65 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 39496 MW; 4D7F7B4E5558887D CRC64; MGDLQGDSWE FRHIYRGTPR RHLLTTGWSK FVNAKQLVAG DTVVFMWCGA PAPERKLLVG VRRAARYSGE SACNARGRVQ PQEVMEAVRL AAEQAAFRVT YYPRHGAGEF VVPRVEVDKG LTTPWRCGMQ VRAQVMEAED TRRLAWLNGT LTNLRHQQIW RTLEVEWDAS AASSSMKNRF VNPWQVQPVD FPPLPMGLKI SNNNISAPVC NGDSLLVPPI LMHPQPQPPA DIQGARHNNG HAYADIPSSS TPSMVRTQQL FPRDLQILVP HTDIVTPQNG SPPDNPVNTP LSASDGMKTI QLFGVTITSP VQGDTNGAFA SAQVNQVPEG VDDETATEEA SDTSLPDSLT NGHNQDGARL // ID A0A0E0PP27_ORYRU Unreviewed; 326 AA. AC A0A0E0PP27; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI05G21790.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI05G21790.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI05G21790.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI05G21790.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI05G21790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI05G21790.1; ORUFI05G21790.1; ORUFI05G21790. DR Gramene; ORUFI05G21790.1; ORUFI05G21790.1; ORUFI05G21790. DR OMA; EFRMVLE; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 326 AA; 36877 MW; EA0F9B4CF09EB925 CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA DEEAVGDKDT STEDAAEQDD SPNAEPLKGT KRRKLRGRRL WVFHKTITTL FVAATDRVFT IIARLAGSLT NESVKFTHRV LAHSTS // ID A0A0E0PP28_ORYRU Unreviewed; 311 AA. AC A0A0E0PP28; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI05G21790.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI05G21790.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI05G21790.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI05G21790.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI05G21790.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI05G21790.2; ORUFI05G21790.2; ORUFI05G21790. DR Gramene; ORUFI05G21790.2; ORUFI05G21790.2; ORUFI05G21790. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 311 AA; 35211 MW; 96D4616CE3ED6A6F CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA DEEAVGDKDT STEDAAEQDD SPNAEPLKGT KRRKLRGRRL WVFHKTITTL FVAATDRVFT IIGVPLTTVE T // ID A0A0E0PP29_ORYRU Unreviewed; 295 AA. AC A0A0E0PP29; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI05G21790.3}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI05G21790.3, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI05G21790.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI05G21790.3}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI05G21790.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI05G21790.3; ORUFI05G21790.3; ORUFI05G21790. DR Gramene; ORUFI05G21790.3; ORUFI05G21790.3; ORUFI05G21790. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33137 MW; 4A9B5EA3E8E51DDC CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSG SRIRSTEQGR DYTGRVASYE QQQRAFKKAE RLQNSLDPEN PSFVKTMVRS HVSSCFWLGL PTRFCKLHLP PKEYKMVLED EEGGEFDSVY IGNRTGLSGG WRGFAMHHNL EDGDSLVFEL AEPDRFKIYI IKAVDEDANE SEPADEEAVG DKDTSTEDAA EQDDSPNAEP LKGTKRRKLR GRRLWVFHKT ITTLFVAATD RVFTIIGVPL TTVET // ID A0A0E0PPY2_ORYRU Unreviewed; 699 AA. AC A0A0E0PPY2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI05G24090.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI05G24090.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI05G24090.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI05G24090.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI05G24090.1; ORUFI05G24090.1; ORUFI05G24090. DR Gramene; ORUFI05G24090.1; ORUFI05G24090.1; ORUFI05G24090. DR OMA; HICFNPR; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 133 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 75520 MW; E10E46FA131790A7 CRC64; MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AADGGGGEVP PAGAAAVPPH VACRVVGVEL RADAATDEVY ARLALVAEGE MLQRNFREGG GEDGAGEMEG CDAEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLVIHLKEKL VTFNDYKTVR PSQELIAVDL HGTQWKFRHI YRGQPRRHLL TIGWSSFVNR KKLVSGDAVL FLRGDDGQLR LGVRRAVQLR NEALFEPVNS SDSKLRILSS VASSLENKSV FHICFNPRSG ASEFIVPYWR LLKSLNHPFS IGMRFRVCYE SEDANERSAG LISGISEVDP IRWPGSRWKC LLVRWDDSTD SSHQNRVSPW EIERVGGSVS VTHSLSSGSK RTKLHFPQGS LDTPFLNGNG HPDSMGTENF HRVLQGQEFR GSRSHGVVCS ESPGVPNFQS PDNRRFSADM RGYMMPASGP PQRNTEFTYQ PIGFSESLGF PEVLQGQEMS QVVPLFRGAT FGARTQNDRV VSANSVHRSA AQSGLLASTL GHPISQFTLS SSKVSSPSSV LMFNQATAPN HETVSGTNNK GMHVSQFASQ EMLSETVTWP GTQRQTPSEI TSNQFALARI PAPPSGAESG LPKRDAGRSS CRLFGFSLTG NMLGEDGEGL DDGAIEAGCE NPPVLELFGH SHSTPGALHA LCAAAPLGM // ID A0A0E0PQU1_ORYRU Unreviewed; 238 AA. AC A0A0E0PQU1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI05G26590.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI05G26590.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI05G26590.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI05G26590.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI05G26590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI05G26590.1; ORUFI05G26590.1; ORUFI05G26590. DR Gramene; ORUFI05G26590.1; ORUFI05G26590.1; ORUFI05G26590. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 238 AA; 24640 MW; D221AA975B779DEC CRC64; MDSTSCLLDD ASSGASTGKK AAAAAASKAL QRVGSGASAV MDAAEPGAEA DSGGERRGGG GGKLPSSKYK GVVPQPNGRW GAQIYERHQR GVLLNFEDAA GKVWKFRYSY WNSSQSYVLT KGWSRFVKEK GLHAGDAVGF YRAAGKNAQL FIDCKVRAKP TTAAAAAAFL SAVAAAAAPP PAVKAIRLFG VDLLTAAAPE LQDAGGAAMT KSKRAMDAMA ESQAHVVFKK QCIELALT // ID A0A0E0PR87_ORYRU Unreviewed; 729 AA. AC A0A0E0PR87; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI05G27690.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI05G27690.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI05G27690.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI05G27690.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI05G27690.2; ORUFI05G27690.2; ORUFI05G27690. DR Gramene; ORUFI05G27690.2; ORUFI05G27690.2; ORUFI05G27690. DR OMA; PGVVNKW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 729 AA; 79713 MW; E645A7A7FC7C1580 CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACAGPVAPL PRKGGVVVYL PQGHLEHLGD APAAAAAAAA VPPHVFCRVV DVTLLADAAT DEVYAQLSLV PEKEEVARRA DDGEGEDGDG MKQRFARMPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHST EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGV RRAAQLKNGS AFPALYNQCS NLGTLANVAH AVATESVFNI YYNPRLSQSE FIVPYWKFMK SLSQPFSVGL RFKMRYESED ATERRYTGII TGSGDTDPMW HGSKWKCLLV RWDDDAEFRR PNRVSPWEIE LTSSVSGSHL STPHSKRLKP CLPHVNPEYM VPRGGGCPDF AESAQFHKVL QGQELLGFKS HGGTAAATSQ PCEARHLQYI DERSCSSDAS NSILGVPRLG DRAPLGNPGF SYHCSGFGES HRLQKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH GRAAFHGPPA LALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RMVAEYQGDG GTDDSDIFIL DVGVGALIM // ID A0A0E0PR88_ORYRU Unreviewed; 712 AA. AC A0A0E0PR88; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI05G27690.3, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI05G27690.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI05G27690.3}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI05G27690.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0PR88; -. DR EnsemblPlants; ORUFI05G27690.1; ORUFI05G27690.1; ORUFI05G27690. DR EnsemblPlants; ORUFI05G27690.3; ORUFI05G27690.3; ORUFI05G27690. DR Gramene; ORUFI05G27690.1; ORUFI05G27690.1; ORUFI05G27690. DR Gramene; ORUFI05G27690.3; ORUFI05G27690.3; ORUFI05G27690. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 78080 MW; F7F696991A46710A CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACAGPVAPL PRKGGVVVYL PQGHLEHLGD APAAAAAAAA VPPHVFCRVV DVTLLADAAT DEVYAQLSLV PEKEEVARRA DDGEGEDGDG MKQRFARMPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHST EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGV RRAAQLKNGS AFPALYNQCS NLGTLANVAH AVATESVFNI YYNPRLSQSE FIVPYWKFMK SLSQPFSVGL RFKMRYESED ATERRYTGII TGSGDTDPMW HGSKWKCLLV RWDDDAEFRR PNRVSPWEIE LTSSVSGSHL STPHSKRLKP CLPHVNPEYM VPRGGGCPDF AESAQFHKVL QGQELLGFKS HGGTAAATSQ PCEARHLQYI DERSCSSDAS NSILGVPRLG DRAPLGNPGF SYHCSGFGES HRLQKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH GRAAFHGPPA LALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RVIDISTMDM MI // ID A0A0E0PSH5_ORYRU Unreviewed; 199 AA. AC A0A0E0PSH5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI06G00530.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G00530.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G00530.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G00530.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G00530.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G00530.1; ORUFI06G00530.1; ORUFI06G00530. DR Gramene; ORUFI06G00530.1; ORUFI06G00530.1; ORUFI06G00530. DR OMA; IDCRRRA; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 21628 MW; 35146531BD284624 CRC64; MATIVAWESR NLQLQGGGGG HVGGGGGGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE KYFPLGPAAR TSPAGTVLCF EDARGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL FGVDLQLRAD ASPALDLQL // ID A0A0E0PSL0_ORYRU Unreviewed; 422 AA. AC A0A0E0PSL0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI06G00790.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G00790.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G00790.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G00790.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G00790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G00790.1; ORUFI06G00790.1; ORUFI06G00790. DR Gramene; ORUFI06G00790.1; ORUFI06G00790.1; ORUFI06G00790. DR OMA; TGAPWIR; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR Pfam; PF02362; B3; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 303 401 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 303 401 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 45010 MW; 7F56ED606E68784B CRC64; MAPPSDSDDS APIPAGAISK LLIVIAMQTE ALPLVNKFHL VEAEESIFPT GAPWIRYHGN YKGLHVDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGADIG DVYLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE SAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL DKAVTEVMEL DTDPTKLKAK PIIKPKVEPC DDDDELPPPP PPASGSGEDW EATTPLAAGN PFFTALIAKS HLHPKFQMWI PPRFQHRLAE PEARTAAVLH SGGKSWATSY CGHLKMKKLD AGWSEFAVDN RLLVGDACVF ELVAMGAAGG LEFQVQILRG GLPAEVVTSK GLTSDQPILI VD // ID A0A0E0PUL9_ORYRU Unreviewed; 237 AA. AC A0A0E0PUL9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI06G06290.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G06290.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G06290.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G06290.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G06290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G06290.1; ORUFI06G06290.1; ORUFI06G06290. DR Gramene; ORUFI06G06290.1; ORUFI06G06290.1; ORUFI06G06290. DR OMA; HLPKHDE; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 27543 MW; 7222AA7BD0F4042A CRC64; MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESAAKPSP VKQRKRKARA LPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRT KFKVYIIRAS SYYETDD // ID A0A0E0PUN5_ORYRU Unreviewed; 1055 AA. AC A0A0E0PUN5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G06450.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G06450.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G06450.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G06450.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0PUN5; -. DR EnsemblPlants; ORUFI06G06450.1; ORUFI06G06450.1; ORUFI06G06450. DR Gramene; ORUFI06G06450.1; ORUFI06G06450.1; ORUFI06G06450. DR OMA; CMEGDVQ; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 940 1024 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1055 AA; 116861 MW; A0D86A705B2282D6 CRC64; MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG SDSIGQLKQS PSQQAPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPST SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG // ID A0A0E0Q0H0_ORYRU Unreviewed; 413 AA. AC A0A0E0Q0H0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI06G23440.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G23440.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G23440.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G23440.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G23440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G23440.1; ORUFI06G23440.1; ORUFI06G23440. DR Gramene; ORUFI06G23440.1; ORUFI06G23440.1; ORUFI06G23440. DR OMA; VFLQNGC; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 143 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 351 413 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 143 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 351 413 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 45921 MW; BD259F25097E439A CRC64; MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE EEEESGRRAA AVLVVGPLGK VWRVELRRSP SGDGEAWLGG GWSELAAAHG LGEGWGVVLR LERRGVASLR VFDPGFCLAR FCTPHAGMRT KDRPHFIKLL QQEDLEKMKI PEKFVQQHLT ETYTNNHQNA IIVCPLGKFW RVELQREQPD VLLRDGWAPF LAAHDLSEGN ILLFRYEGNM VFTVEVFLQN GCLKEYKTAA LYLTDGTEGP SNAPQQSAAK VGVSPVKRKR TRRIEGTCLE GPNRKSRASP ISVKVEPHKK HVSIVSQNSF TKEMTAYSIH SLLSVRGTFC SQIGLLEACA ITLKISMKKK GSWRVAFKTA NTYGYINGPG WRKFCLENEV KEGDCLTFNA IETTVWHVVI VHC // ID A0A0E0Q1M2_ORYRU Unreviewed; 917 AA. AC A0A0E0Q1M2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G26570.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G26570.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G26570.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G26570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0Q1M2; -. DR EnsemblPlants; ORUFI06G26570.1; ORUFI06G26570.1; ORUFI06G26570. DR Gramene; ORUFI06G26570.1; ORUFI06G26570.1; ORUFI06G26570. DR OMA; AVEEHKC; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 786 870 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 917 AA; 101782 MW; C2878D1D0985D555 CRC64; MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL LMQGGIPSLQ GENDSTAIPY STSNFLSPSQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ ESRSLSTGIA SVGSVEF // ID A0A0E0Q1T6_ORYRU Unreviewed; 735 AA. AC A0A0E0Q1T6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G27120.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G27120.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G27120.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G27120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G27120.1; ORUFI06G27120.1; ORUFI06G27120. DR Gramene; ORUFI06G27120.1; ORUFI06G27120.1; ORUFI06G27120. DR OMA; HQLDHGM; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 649 732 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 735 AA; 79883 MW; 771E95B1A53CA7E4 CRC64; MSVTRDRTKS PGGHPTSPEG RLHAFVYLYF PNKREMITFV DSAAKERERE SDKCLDPQLW HACAGGMVQM PPVSSKVYYF PQGHAEHAQG HGPVEFPGGR VPALVLCRVA GVRFMADPDT DEVFAKIRLV PVRANEQGYT GDADDGIGAA AAAAAQEEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVLAKDVHG VVWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFM RTENGDLCVG IRRAKKGGVG GPEFLPPPPP PPPTPAAGGN YGGFSMFLRG DDDGNKMAAA ARGKVRARVR PEEVVEAANL AVSGQPFEVV YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK LCVPLYPELP IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH GLHQLDHGMQ PRIAAGLIIG HPAARDDISC LLTIGSPQNN KKSDGKKAPA QLMLFGKPIL TEQQISLGDA ASVAVKKSSS DGNAENTVNK SNSDVSSPRS NQNGTTDNLS CGGVPLCQDN KVLDVGLETG HCKVFMQSED VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA AGALKHTGDE PFSEFTKTAR RLNILTDTSG DNLAR // ID A0A0E0Q1T7_ORYRU Unreviewed; 700 AA. AC A0A0E0Q1T7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G27120.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G27120.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G27120.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G27120.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G27120.2; ORUFI06G27120.2; ORUFI06G27120. DR EnsemblPlants; ORUFI06G27120.3; ORUFI06G27120.3; ORUFI06G27120. DR Gramene; ORUFI06G27120.2; ORUFI06G27120.2; ORUFI06G27120. DR Gramene; ORUFI06G27120.3; ORUFI06G27120.3; ORUFI06G27120. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 614 697 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 75868 MW; B7F82F4BF5B26BFA CRC64; MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYTGDADD GIGAAAAAAA QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL PPPPPPPPTP AAGGNYGGFS MFLRGDDDGN KMAAAARGKV RARVRPEEVV EAANLAVSGQ PFEVVYYPRA STPEFCVKAG AVRAAMRTQW FAGMRFKMAF ETEDSSRISW FMGTVSAVQV ADPIRWPNSP WRLLQVSWDE PDLLQNVKRV SPWLVELVSN MPAIHLAPFS PPRKKLCVPL YPELPIDGQF PTPMFHGNPL ARGVGPMCYF PDGTPAGIQG ARHAQFGISL SDLHLNKLQS SLSPHGLHQL DHGMQPRIAA GLIIGHPAAR DDISCLLTIG SPQNNKKSDG KKAPAQLMLF GKPILTEQQI SLGDAASVAV KKSSSDGNAE NTVNKSNSDV SSPRSNQNGT TDNLSCGGVP LCQDNKVLDV GLETGHCKVF MQSEDVGRTL DLSVVGSYEE LYRRLADMFG IEKAELMSHV FYRDAAGALK HTGDEPFSEF TKTARRLNIL TDTSGDNLAR // ID A0A0E0Q2A4_ORYRU Unreviewed; 997 AA. AC A0A0E0Q2A4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G28510.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G28510.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G28510.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G28510.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G28510.1; ORUFI06G28510.1; ORUFI06G28510. DR Gramene; ORUFI06G28510.1; ORUFI06G28510.1; ORUFI06G28510. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 853 937 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 596 626 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 997 AA; 111304 MW; 10FEB14DB8344058 CRC64; MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLSQQQ MMPQQSTKND GLLHQNFPMS NFNQPQMFKD APPDAEIHAA NTSNNALFGI NGDGPLGFPI GLGTDDFLSN GIDAAKYENH ISTEIDNSYR IPKDAQQEIS SSMVSQSFGA SDMAFNSIDS TINDGGFLNR SSWPPAAPLK RMRTFTKVYK RGAVGRSIDM SQFSGYDELK HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW EEFVGCVKCI RILSPQEVQQ MSLEGCDLGN NIPPNQACSS SDGGNAWRAR CDQNSEAILK ISMMKSKVED VRYWNTA // ID A0A0E0Q2A5_ORYRU Unreviewed; 1171 AA. AC A0A0E0Q2A5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G28510.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G28510.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G28510.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G28510.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G28510.2; ORUFI06G28510.2; ORUFI06G28510. DR Gramene; ORUFI06G28510.2; ORUFI06G28510.2; ORUFI06G28510. DR OMA; HCSMINT; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1027 1111 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 596 626 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1171 AA; 129567 MW; 54F785831F705449 CRC64; MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLSQQQ MMPQQSTKVP SQNTPLPLPV QQEPQQKLLQ KQAMLADTSE AAVPPTTSVN VISTTGSPLM TTGATHSVLT EEIPSCSTSP STANGNHLLQ PILGRNKHCS MINTEKVPQS AAPMSVPSSL EAVTATPRMM KDSPKLNHNV KQSVVASKLA NAGTGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHQN FPMSNFNQPQ MFKDAPPDAE IHAANTSNNA LFGINGDGPL GFPIGLGTDD FLSNGIDAAK YENHISTEID NSYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSTINDGG FLNRSSWPPA APLKRMRTFT KVYKRGAVGR SIDMSQFSGY DELKHALARM FSIEGQLEER QRIGWKLVYK DHEDDILLLG DDPWEEFVGC VKCIRILSPQ EVQQMSLEGC DLGNNIPPNQ ACSSSDGGNA WRARCDQNSE AILKISMMKS KVEDVRYWNT A // ID A0A0E0Q2A6_ORYRU Unreviewed; 1138 AA. AC A0A0E0Q2A6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G28510.3, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI06G28510.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI06G28510.3}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI06G28510.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI06G28510.3; ORUFI06G28510.3; ORUFI06G28510. DR Gramene; ORUFI06G28510.3; ORUFI06G28510.3; ORUFI06G28510. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 994 1078 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 563 593 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1138 AA; 125973 MW; 62E5E300C7D53A7F CRC64; MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQAQTN LGQAQVLVQN QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQQKLLQQQ QQQLLLQQQQ QLSKMPAQLS SLANQQFQLT DQQLQLQLLQ KLQQQQQSLL SQPAVTLAQL PLIQEQQKLL LDMQQQLSNS QTLSQQQMMP QQSTKVPSQN TPLPLPVQQE PQQKLLQKQA MLADTSEAAV PPTTSVNVIS TTGSPLMTTG ATHSVLTEEI PSCSTSPSTA NGNHLLQPIL GRNKHCSMIN TEKVPQSAAP MSVPSSLEAV TATPRMMKDS PKLNHNVKQS VVASKLANAG TGSQNYVNNP PPTDYLETAS SATSVWLSQN DGLLHQNFPM SNFNQPQMFK DAPPDAEIHA ANTSNNALFG INGDGPLGFP IGLGTDDFLS NGIDAAKYEN HISTEIDNSY RIPKDAQQEI SSSMVSQSFG ASDMAFNSID STINDGGFLN RSSWPPAAPL KRMRTFTKVY KRGAVGRSID MSQFSGYDEL KHALARMFSI EGQLEERQRI GWKLVYKDHE DDILLLGDDP WEEFVGCVKC IRILSPQEVQ QMSLEGCDLG NNIPPNQACS SSDGGNAWRA RCDQNSEAIL KISMMKSKVE DVRYWNTA // ID A0A0E0Q4W5_ORYRU Unreviewed; 784 AA. AC A0A0E0Q4W5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G05150.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G05150.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G05150.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G05150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G05150.1; ORUFI07G05150.1; ORUFI07G05150. DR Gramene; ORUFI07G05150.1; ORUFI07G05150.1; ORUFI07G05150. DR OMA; KHVADAW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 497 598 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 497 598 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 784 AA; 85931 MW; 691DD6F2D0EC30D7 CRC64; MAQPPDDAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKKRCR YMLGDLGVND NDGWRGFVKA KRLATRDTVV FMRRGGGDGD GDGDGELLVG VRRAPRARGG HHPRPGVEDN KVVSEVWLAM QGVTPFEVTY YPREGTFEFV VSRDEYIGFS FSPFYPFVPG TTVHLRMNPL QIAQSISGTV RTFDHLRPWR MLEVDWDQAA SPISYRIHRQ VNSWQVLRQP QPAATTSAVR IRDAIVATPQ VQIMAPPRPP PPTTTTGMVP VIDHDIWLAC ATPYSGRLPV VGSAVYYFPQ GHAEQCHTCT TCLIPDNRHR LRCTSDDSYA MISLFPGDCY VTHRPLPAAR DPVGGQREFC FFDKKLSPSD AAANGGGSGA LFVIPKPSAA EHVLPRIPDL RVTNLQGGRW EFGHTWSDAD TDRRSSSHTL AAGWSAFVKA KRLCVGDTVI FMRRRPGGEP LVGVRRKPHG GMPVGIPDKH VADAWLDASS AQPFRVTYCP WQGTAEFVVR REEVEGSPPL APGTRVRLLM NPDDARRRSQ PPVYGTVRDV HCRSEWRMLE VDWDRDSPLA PTMNRRVNSW QVQPVQLALP PQGSDEEAAA ATTSTAHAGD ATTSAPSLAL QLQTMASSSS SSAPIIPSRG SAFRIVNPRD GSQG // ID A0A0E0Q4W6_ORYRU Unreviewed; 644 AA. AC A0A0E0Q4W6; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G05160.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G05160.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G05160.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G05160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G05160.1; ORUFI07G05160.1; ORUFI07G05160. DR Gramene; ORUFI07G05160.1; ORUFI07G05160.1; ORUFI07G05160. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 325 424 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 325 424 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 644 AA; 72207 MW; 8ABAF7A656CC68C3 CRC64; MQSNPVRFLD ADNSDDHRSA NDSVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL PVAVQEVIAA AGRAAAGEQF TATYRTRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA PPPPLSPKRL KSSEDHLPPP KASASAAAAK ASPSSSAQAQ QFSITREMWR ACAAPKSGRL PAVGSFVYYF PDGHAHQCPS RPPEPLPGRV FLCKVTAVRL DATRNELFAT MSLIPVARDQ AIQPQAPADP GPSSPQVQTT LVSFVKPLTC TDAVKNRYRF IVPKRETAMG VLPQLQLNEH VPLYIKDMHG KEWVINYTWK EYTHMLSSGW IKFANANRLV TGDNVVFMRS MDSGERYMGL RRTLKPEPVS VDEVIEAVWR AARLEPFEVT YLSRQDGDEF VVPCGIVHNA LRAKFTPGMV VNFVWAVEED RLPNVGPQGK VIAIENYATS IWRMIQVEWP SCAGMNRYVN FWQIREVLGE SSFEASTCIV RSQDYSPAPQ RNLVNALQLP DGTKQLQQNK KSVSSSSTFR LFGKKMTPGV PPRRDTSGLS GQVSLFSHYL PHDEDDGQVP TMRQRLETLF PDNI // ID A0A0E0Q4W7_ORYRU Unreviewed; 407 AA. AC A0A0E0Q4W7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI07G05160.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G05160.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G05160.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G05160.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G05160.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G05160.2; ORUFI07G05160.2; ORUFI07G05160. DR Gramene; ORUFI07G05160.2; ORUFI07G05160.2; ORUFI07G05160. DR OMA; HRENRAG; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 407 AA; 44578 MW; 613B6242EE556D01 CRC64; MAAAAAPLAD DGDGIVDRAM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAAAAGGQQ LRYFVKTLMI SDFDFRIRFS APMADAKGVF PPLVDAKAVQ PLLVKDLHGS PMTFDYGRKG KRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDDDDGELY VGVRRQRTLE RPLRNTMRRY RPPTPPQAAV QEAVLAAAGH AAAGERFTVA YRSRQDGDEF VVPREAVEEG LRARLTSLAE VEFVWAVEDG APPIVGPRGK VTAIATGQLW RNLEIVWDGN SEMDMSANFW QVRPVEEVDI SPSTPPPKRL KNCEIDDTAS TSVSVDNGDE QVPTMRQRLE ALIPDNI // ID A0A0E0Q4X3_ORYRU Unreviewed; 405 AA. AC A0A0E0Q4X3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G05220.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G05220.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G05220.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G05220.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G05220.1; ORUFI07G05220.1; ORUFI07G05220. DR Gramene; ORUFI07G05220.1; ORUFI07G05220.1; ORUFI07G05220. DR OMA; MEFSNAN; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 217 315 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 217 315 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 405 AA; 43625 MW; D99FF8E2C9A10CC3 CRC64; MRAAPLPHPC WPRFVDGLRG EDDSGGHEYT SVSGIHVPSS SGVAFVSFGQ CPQEVISTDL RLGLGPIAAT APLQPPPPPA AAAAAGSPSA TTPEPGHGEA TPTTSSSAQF QTQAQQVTRD MWMACAAPKS GRLPTVGSLV YYFPDGHAEQ CLSRPQEPLP GRIFLCKVTD VRLGAAATNE ALATISLVPI AADDHAFQLQ APADPDPAPA QSQSLVSFVK PLTYTDVTKN RFMVPKDDAA AGVLPHIQLN DDVPLRIKDL SGKEWAFNYT WKAHTRMFRN GWMEFSNANG LVTGDNAVFM RRGNGEMFMA VRRTRNRPAP FSVEEAIEAV WRAARREPFE VSYCSRQDGD EFVVPRDIVD DGLRARFAPG MAVNFVWAVE DGKLPTIGPQ GEVISIENYA TSIGA // ID A0A0E0Q5V8_ORYRU Unreviewed; 236 AA. AC A0A0E0Q5V8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI07G07980.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G07980.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G07980.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G07980.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G07980.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G07980.1; ORUFI07G07980.1; ORUFI07G07980. DR Gramene; ORUFI07G07980.1; ORUFI07G07980.1; ORUFI07G07980. DR OMA; MTIGWKE; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 26879 MW; E8CF7468AEA71533 CRC64; MHSPTFSMVK IKTASQDYLP IPVAVTKASR LKHGRTLKLM TAHGLKIRVK VAEARDKLYM TIGWKEFIQQ TGLKMGESKS VVFRTLSKSR LNVIIFNKEG YSRCPIPDKA AKALINNRSS SAPSFSTKST APRHPSSTNV EGRVHKTKSH KNQHIQLRFK HHIGSTSTAN TKRIVKDMCC YNKRMKLSSE VKNYVRDIAQ FLDYSSKFYI VTIKNIHEVR QGGKIFHLLS IYSLEK // ID A0A0E0Q6J7_ORYRU Unreviewed; 1463 AA. AC A0A0E0Q6J7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI07G10000.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G10000.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G10000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G10000.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G10000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G10000.1; ORUFI07G10000.1; ORUFI07G10000. DR Gramene; ORUFI07G10000.1; ORUFI07G10000.1; ORUFI07G10000. DR OMA; TSICIFG; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.20.25.80; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR003657; WRKY_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF03106; WRKY; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00774; WRKY; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF118290; SSF118290; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50811; WRKY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1370 1417 WRKY DNA-binding. FT {ECO:0000259|PROSITE:PS50811}. FT DNA_BIND 74 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1463 AA; 165285 MW; 31353262BF28CDF2 CRC64; MEPGSSSREG EQQEPANERL TATGGGGGGG GGSPVSDQEL SDGEEVSDGE YQAGDDFSGY AVRGRGFVEK EHIFDKVVTP SDVGNLGRLV IPWQHAECYF PRDVPANERE GVVLRFEDDA GNSWRFLYRG SSLTLGWSHF FRKNRLDAGD MVSFYRGASE ATRDRLFIHS KRRMHILPTL GYSDPQVHIN RLFQLLVRVR TMVSSFGKSG SPSPPNSLLP TVQNFTYKAL KDCLQDLHYY SLLSMMGRNH KSQSTSAKIR DTIPTLDALI QLRSLSDPVF RIPAAATSHC ILLCRGVLGI MGFLCSDENM KEDHRMLQVP AFDDLNYSAQ DKITRMKEQT MPSSLADPIY LLPTAIRNLL YLDLSNCSDI VQLPPSLGSS LHMLSALNLS CCYSLRALPD SLVCLYDLQI LLLSFCHNLQ NLPVSFGDLS NLRLLDLSGC RSLRLFPSSF VNLGSLENLN LSDCIRLMGI PQNFEDLQKL EYLNFAGCYR VDLPVYCLTN LVNLKCLTLS NHTDIKDFPY SFTDLKRHLY LSRWWKYNWV HTQCNLKSYR CHQQRIINSL LSDGSDEGDI TSEQSLTSIC IFGESGTGKT ELLHEIYNDQ KILEGFHLRI WINMCDKKRL LEKIIEFTAC AYCYDAPSSI LEETVREELN GKRFLLVLND ADIENQCFWT DVWKVSNVGA AGSALIVTTR SKEVASLFGA MKPYYMNPLS KEECFMVFQE HADCGFDINN DHELTKVGWK IVEKCGGNLL CMKALSGLLW HSKTALSEID SLVGGIVPAL RLCYDLLPSH LKQCFKFCSL FPKDYVFVKH HIIQLWISQG FVYPEEDSQP EDTGLQYFNE FLCRSFFQHC PFSNDHEDKF VMHELFHDLA RSVSKDESFS SEEPFFSLPE NICHLSLVIS DSNTVVLTKE HRHLQSLMVV RRSATEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI VDLPGSIGRM KHLRFLAMNN TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL RHLDVQKEPG NIHVGMPSGL GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG LQNITAGDDA KEANLVGKQF LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL AIQNYPGNSF PNWIKDSGLC MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG QRSNSLTTDG KHAPGFPSLE ILNLWEMYSL QFWNGTRYGD FPQLRGLSIS RCPKLSNLPP LISLLYLSFH CGDQLPALSE FPSLKSLKIE GFQKLKSVSF CPEMPLLQKL EISDCKELVS IDAPLLSVSN LKVVRCPKLH FGGSWLEGCL MWEEFKRDKC TIKYLLVNTM KDDGWNWIKY GQKDILGSKY QRSYLRCNQM HSTGCKARKI VEPSNDDLNI WLDQPSKFLH KPKVFVNAAQ RAVTTFLIPR SAQQIVCFSL ANP // ID A0A0E0Q6J8_ORYRU Unreviewed; 1397 AA. AC A0A0E0Q6J8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI07G10000.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G10000.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G10000.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G10000.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G10000.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G10000.2; ORUFI07G10000.2; ORUFI07G10000. DR Gramene; ORUFI07G10000.2; ORUFI07G10000.2; ORUFI07G10000. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.20.25.80; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR003657; WRKY_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF118290; SSF118290; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1397 AA; 157816 MW; 04108828B33438FB CRC64; MEPGSSSREG EQQEPANERL TATGGGGGGG GGSPVSDQEL SDGEEVSDGE YQAGDDFSGY AVRGRGFVEK EHIFDKVVTP SDVGNLGRLV IPWQHAECYF PRDVPANERE GVVLRFEDDA GNSWRFLYRG SSLTLGWSHF FRKNRLDAGD MVSFYRGASE ATRDRLFIHS KRRMHILPTL GYSDPQVHIN RLFQLLVRVR TMVSSFGKSG SPSPPNSLLP TVQNFTYKAL KDCLQDLHYY SLLSMMGRNH KSQSTSAKIR DTIPTLDALI QLRSLSDPVF RIPAAATSHC ILLCRGVLGI MGFLCSDENM KEDHRMLQVP AFDDLNYSAQ DKITRMKEQT MPSSLADPIY LLPTAIRNLL YLDLSNCSDI VQLPPSLGSS LHMLSALNLS CCYSLRALPD SLVCLYDLQI LLLSFCHNLQ NLPVSFGDLS NLRLLDLSGC RSLRLFPSSF VNLGSLENLN LSDCIRLMGI PQNFEDLQKL EYLNFAGCYR VDLPVYCLTN LVNLKCLTLS NHTDIKDFPY SFTDLKRHLY LSRWWKYNWV HTQCNLKSYR CHQQRIINSL LSDGSDEGDI TSEQSLTSIC IFGESGTGKT ELLHEIYNDQ KILEGFHLRI WINMCDKKRL LEKIIEFTAC AYCYDAPSSI LEETVREELN GKRFLLVLND ADIENQCFWT DVWKVSNVGA AGSALIVTTR SKEVASLFGA MKPYYMNPLS KEECFMVFQE HADCGFDINN DHELTKVGWK IVEKCGGNLL CMKALSGLLW HSKTALSEID SLVGGIVPAL RLCYDLLPSH LKQCFKFCSL FPKDYVFVKH HIIQLWISQG FVYPEEDSQP EDTGLQYFNE FLCRSFFQHC PFSNDHEDKF VMHELFHDLA RSVSKDESFS SEEPFFSLPE NICHLSLVIS DSNTVVLTKE HRHLQSLMVV RRSATEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI VDLPGSIGRM KHLRFLAMNN TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL RHLDVQKEPG NIHVGMPSGL GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG LQNITAGDDA KEANLVGKQF LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL AIQNYPGNSF PNWIKDSGLC MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG QRSNSLTTDG KHAPGFPSLE ILNLWEMYSL QFWNGTRYGD FPQLRGLSIS RCPKLSNLPP LISLLYLSFH CGDQLPALSE FPSLKSLKIE GFQKLKSVSF CPEMPLLQKL EISDCKELVS IDAPLLSVSN LKVVRCPKLH FGGSWLEGCL MWEEFKRDKC TIKYLLVNTM KDDGWNWIKY GQKDILGSKY QRGLKMK // ID A0A0E0Q9X3_ORYRU Unreviewed; 788 AA. AC A0A0E0Q9X3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI07G19520.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G19520.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G19520.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G19520.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G19520.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G19520.1; ORUFI07G19520.1; ORUFI07G19520. DR Gramene; ORUFI07G19520.1; ORUFI07G19520.1; ORUFI07G19520. DR OMA; PAGMNQI; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 541 591 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 286 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 788 AA; 87740 MW; 1168569B4B3F2903 CRC64; MCARKSHAAM APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAFE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT QHTTLDPTYA YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDPCSSV STTFKLDSHH PSILKDDPSA VPAGLSSNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ AQLRNGRPRM DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR LVLPKKCAEA YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVLPPPEAN NKVVVPDSSP NAAVPRPIKV NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI KRFHMDSEES MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI KPGAAKKTKG KVDTDNIDVS DGLDTLANLA ILGEGESLPS QPTTRHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCMT VRRRFRTLMM RREKRQQSEK DSGVPRKREP GQSSEPVPQS GSGAHPTSTS SPHQRADTNG EGPEDMSIDN KRTSSPVKNQ IDLNSQPERE DEQSPKSDAT RLLRDNPT // ID A0A0E0QCT2_ORYRU Unreviewed; 949 AA. AC A0A0E0QCT2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI07G27410.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G27410.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G27410.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G27410.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G27410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0QCT2; -. DR EnsemblPlants; ORUFI07G27410.1; ORUFI07G27410.1; ORUFI07G27410. DR Gramene; ORUFI07G27410.1; ORUFI07G27410.1; ORUFI07G27410. DR OMA; MFHSKDS; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 623 673 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 949 AA; 104070 MW; 42E00159DD64FB3B CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK QRQSEREEAE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRD GDVTMFDKVD INKGHIDLNF HPTAVRDEER HGGQPRVSMV SLLEVANRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ PALVESEERT SNNDGGRVAT AEQPESMAVD EAGDNQPDKA AGDSAAALA // ID A0A0E0QCT3_ORYRU Unreviewed; 915 AA. AC A0A0E0QCT3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI07G27410.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G27410.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI07G27410.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI07G27410.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI07G27410.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI07G27410.2; ORUFI07G27410.2; ORUFI07G27410. DR Gramene; ORUFI07G27410.2; ORUFI07G27410.2; ORUFI07G27410. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 329 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 589 639 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 329 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 915 AA; 100533 MW; AAE2BC4B4386E36F CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK VPSPVVPKLF SSQNNQRLFG KSDDLLSGRP LETSSLMVDA RNDDLTIIAK NNLPFMVKNV EAGQSSNILR QKELENGARQ IKWELPTLSI GDMGRIPFLT RSQSALESRR DENKDPTTES TTSESLSEAC LNMSLGIASN GNKLEATSTV ERPMLSPTTG FPEGRELTTA LSPFQHAQRA RHFLTRPPRV GEGAVFDPTK DMLPHLRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGRPLTIQD AKGKEWHFQF RFWPNNNSRM YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG KLVMGFRKAT NTVSLPDSQI SAIANGSILG DTLFSSTNEN LAIVSGYSGF LQSIKGAADL HTSSIYDHHV NSADGDVSWL KTDKFGSRPD EGSLQFLKRG RNIGSKSRRL SMDAEEAWEL KLYWDEVQEL LRPAPTAKPT VVMIEDYEIE EYDEPPVFAK RSIFTIRSTG EQDQWIQCDD CSKWRRLPLN VIVASKWTCA DNTIDSKSCS CSAPEELTPK ELHIVLQQYE DMRRRRNSFG FKQNIPEMDA VSLDAFATAA VYGDVGNQGS PSVATTTKHP RHRPGCTCIV CIQPPSGKGP KHNPACTCNV CMTVRRRFKT LMMRKKQRQS EREEAEASKK IAWMNRDEPE GSSLSRSPQT VDTTRDGDVT MFDKVDINKG HIDLNFHPTA VRDEERHGGQ PRVSMVSLLE VANRPLENYM KQNGLTSLAG EQGSSSTCTG AATVPQPALV ESEERTSNND GGRVATAEQP ESMAVDEAGD NQPDKAAGDS AAALA // ID A0A0E0QD75_ORYRU Unreviewed; 315 AA. AC A0A0E0QD75; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G00070.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G00070.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G00070.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G00070.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G00070.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G00070.1; ORUFI08G00070.1; ORUFI08G00070. DR Gramene; ORUFI08G00070.1; ORUFI08G00070.1; ORUFI08G00070. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 206 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 206 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 34589 MW; 9B7DF27BF6D4DF29 CRC64; MGQMDGGDGG GGGPPYHYQA LLAAVHQQTV PFPNPFPAPS SGFADWSAST SAFTSLAAHS STAPSNAVHY SFSPCYAFWT HYMLNKNAYP TSFPAPHDDH LRLANNNHPR DAPGPASSYG VESFTSPSMA PNICTHMPPI EGPISAKEDK KPEILPRVVK SSDELETRNS NVEFHSETVG TLPESKQGHD SRATKLLNSG EYQVILRKEL TKSDVGNVGR IVLPKKDAEA SLPPLLQRDP LILHMDDMVL PVTWKFKYRY WPNNKSRMYI LDSAGEFLKT HGLQAGDVII IYKNLAPGKF IIRGEKAIHQ QTTNP // ID A0A0E0QD76_ORYRU Unreviewed; 362 AA. AC A0A0E0QD76; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G00070.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G00070.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G00070.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G00070.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G00070.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G00070.2; ORUFI08G00070.2; ORUFI08G00070. DR Gramene; ORUFI08G00070.2; ORUFI08G00070.2; ORUFI08G00070. DR OMA; KFIIRGE; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 253 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 253 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 362 AA; 39902 MW; FBAB30696FDDF75A CRC64; MGQMDGGDGG GGGPPYHYQA LLAAVHQQTV PFPNPFPAPS SGAEPPHPHN HNHNHNHNHN IHNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF TSLAAHSSTA PSNAVHYSFS PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTSPSMAPNI CTHMPPIEGP ISAKEDKKPE ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT NP // ID A0A0E0QEK3_ORYRU Unreviewed; 265 AA. AC A0A0E0QEK3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G03850.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G03850.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G03850.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G03850.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G03850.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G03850.1; ORUFI08G03850.1; ORUFI08G03850. DR Gramene; ORUFI08G03850.1; ORUFI08G03850.1; ORUFI08G03850. DR OMA; FNVECSG; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 34 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 265 AA; 28736 MW; 7C9C3643F83707D0 CRC64; MYMDLTLGGA LLQVEEATEE EEEEEEEEQA LGQEPAPAAA AAALREHMFD KVVTPSDVGK LNRLVVPKQH AERFFPAAAA GTQLCFEDRA GTPWRFRYSY WGSSQSYVMT KGWSRFVRAA RLSAGDTVSF SRAADGRYFI DYRHCHRHGG RDISFASAAT AMPAAAWPLF GRVQTAAPVS YGGGHGSAAA ATMFLDTVAP VAAAGGHRGE VGPSGQRSFR LFGVNVECGG DVDAAAEEED ADDDVDDGDH RRGEEMELVM WTNHR // ID A0A0E0QHC0_ORYRU Unreviewed; 350 AA. AC A0A0E0QHC0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G11760.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G11760.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G11760.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G11760.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G11760.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G11760.1; ORUFI08G11760.1; ORUFI08G11760. DR Gramene; ORUFI08G11760.1; ORUFI08G11760.1; ORUFI08G11760. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 87 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 350 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 87 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39433 MW; 46555937512DC99E CRC64; MMGDFQHEMI IPKEFVQRLK GDIPGEIQLE TRNRNSHTVR VDKTQEKVIF TEGWAQFVKT FDLQMGDSMM FRFNGNSQFD VIIVDQIGRE KACSAVVDDS QNPNVQERRV DATETLNSSR AHSQPMPMQS TTETVNHSHA RPCPMHTAVD CMPLSHAHPQ PMPMQFPTET VNHCHAPTGP MEMPLENVAL SHAHARPLQM QSQPTDRLTQ VQRGYSLSSK DQDCRVGVIP DPIIGQKTIL SRVQVNVVKR KIQNIGSQIP IFVSVIGKNN ASGRISSLSI ANRYVDNYLQ DEKTIRLSRL GDKWNIRLSD SSGNRRMVGG CRKFAEDNDV GVGDICLFEL LKNHKCTMKT // ID A0A0E0QHC1_ORYRU Unreviewed; 359 AA. AC A0A0E0QHC1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G11760.2}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G11760.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G11760.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G11760.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G11760.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G11760.2; ORUFI08G11760.2; ORUFI08G11760. DR Gramene; ORUFI08G11760.2; ORUFI08G11760.2; ORUFI08G11760. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 87 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 87 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 40481 MW; 8ED500A824A28C18 CRC64; MMGDFQHEMI IPKEFVQRLK GDIPGEIQLE TRNRNSHTVR VDKTQEKVIF TEGWAQFVKT FDLQMGDSMM FRFNGNSQFD VIIVDQIGRE KACSAVVDDS QNPNVQERRV DATETLNSSR AHSQPMPMQS TTETVNHSHA RPCPMHTAVD CMPLSHAHPQ PMPMQFPTET VNHCHAPTGP MEMPLENVAL SHAHARPLQM QSQPTDRLTQ VQRGYSLSSK DQDCRVGVIP DPIIGQKTIL SRVQVNVVKR KIQNIGSQIP IFVSVIGKNN ASGRISSLSI ANRYVDNYLQ DEKTIRLSRL GDKWNIRLSD SSGNRRMVGG CRKFAEDNDV GVGDICLFEL LKNHKCTMKV HIIRAKDIC // ID A0A0E0QHC2_ORYRU Unreviewed; 388 AA. AC A0A0E0QHC2; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G11760.3}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G11760.3, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G11760.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G11760.3}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G11760.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G11760.3; ORUFI08G11760.3; ORUFI08G11760. DR Gramene; ORUFI08G11760.3; ORUFI08G11760.3; ORUFI08G11760. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 388 AA; 44037 MW; 65D4AAAA860D1BFE CRC64; MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV QRGYSLSSKD QDCRVGVIPD PIIGQKTILS RVQVNVVKRK IQNIGSQIPI FVSVIGKNNA SGRISSLSIA NRYVDNYLQD EKTIRLSRLG DKWNIRLSDS SGNRRMVGGC RKFAEDNDVG VGDICLFELL KNHKCTMKVH IIRAKDIC // ID A0A0E0QHC3_ORYRU Unreviewed; 406 AA. AC A0A0E0QHC3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G11760.4}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G11760.4, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G11760.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G11760.4}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G11760.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G11760.4; ORUFI08G11760.4; ORUFI08G11760. DR Gramene; ORUFI08G11760.4; ORUFI08G11760.4; ORUFI08G11760. DR OMA; FSENNDC; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 310 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 310 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 45800 MW; 0C34FDA4F24EDFF7 CRC64; MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV QRGNSSKGNM TTMSSSSMSS GYSLSSKDQD CRVGVIPDPI IGQKTILSRV QVNVVKRKIQ NIGSQIPIFV SVIGKNNASG RISSLSIANR YVDNYLQDEK TIRLSRLGDK WNIRLSDSSG NRRMVGGCRK FAEDNDVGVG DICLFELLKN HKCTMKVHII RAKDIC // ID A0A0E0QHD0_ORYRU Unreviewed; 391 AA. AC A0A0E0QHD0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI08G11820.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G11820.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G11820.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G11820.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G11820.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G11820.1; ORUFI08G11820.1; ORUFI08G11820. DR Gramene; ORUFI08G11820.1; ORUFI08G11820.1; ORUFI08G11820. DR OMA; RMGDSMM; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44671 MW; 37174CD560538A39 CRC64; MGTWCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD IPEEIQLETH NRNSYTVRVD KSQEKVIFAA GWAQFVKTFD LHMGDSMMFR FKGNSQFDVI IFDQVGREKV CSVAVDDYLD PNVQEGRTDA TETLNSSRAH SQDDYLDPNV QEGRTNATET LNSSRAHSQP MPMQTPATET LNSSRAHSQD MPMQSPATET LNSSRAHPQP MPMQLPTETV NHFHAPHYPM QMPIENMALS RTQAMPTQMQ SPPTYRWTQV QRDNLRYSLP SEDQGCRVGV IPDPIIGRRT KLNPVQEKVV NFKIQHIHSE IPIFVAVIKR SNVSGVLSTL SVAKRYVDEY LGGERFISLS RLGGKWGIRL LLVGVGVAQG W // ID A0A0E0QLB7_ORYRU Unreviewed; 1148 AA. AC A0A0E0QLB7; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G23260.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G23260.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G23260.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G23260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G23260.1; ORUFI08G23260.1; ORUFI08G23260. DR Gramene; ORUFI08G23260.1; ORUFI08G23260.1; ORUFI08G23260. DR OMA; SHSFGVA; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1148 AA; 126828 MW; EDE3B8B28FA6CBC7 CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ QPHVQHQQIP QQLHHHQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGHQ LLKTDDVPST STSPSTNSNP VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEHRPATGQ DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP QEEMQMRLVG DFGDSFLPNQ ACSSSDGAHS SRRFFVAAGA GAAASPVDSL AGGGWTGRNL RSTLSPRH // ID A0A0E0QLB8_ORYRU Unreviewed; 1116 AA. AC A0A0E0QLB8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G23260.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G23260.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G23260.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G23260.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G23260.2; ORUFI08G23260.2; ORUFI08G23260. DR Gramene; ORUFI08G23260.2; ORUFI08G23260.2; ORUFI08G23260. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1116 AA; 123715 MW; C46060E1FFCBD993 CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ QPHVQHQQIP QQLHHHQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGHQ LLKTDDVPST STSPSTNSNP VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEHRPATGQ DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP QEEMQMRLVG DFGDSFLPNQ ACSSSDGGHP WRITGD // ID A0A0E0QLB9_ORYRU Unreviewed; 1083 AA. AC A0A0E0QLB9; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI08G23260.3, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI08G23260.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI08G23260.3}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI08G23260.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI08G23260.3; ORUFI08G23260.3; ORUFI08G23260. DR Gramene; ORUFI08G23260.3; ORUFI08G23260.3; ORUFI08G23260. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 965 1049 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 99 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1083 AA; 120149 MW; A8A9D61F862ABE3D CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQADPDTD EVYARMTLQP VSNVTQCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPRLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDAK QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTIYYN PRASTSEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK TSHWRNIQVA WDEAAPTERR TRVSLWEIEP IIAPFFIYPS PLFTAKRPRL PGMTDDETEM DGLLKRAMPW VGEEICKKDL NIQNSVVPGL NLAQWMNMQH SSSLPGTVVQ PELLNSLSGK PVQNLAAADL SRQISFHPQF LQQNNIQFNT ALVPQQNQQT EQLAKVIPTP NQLGSVIIPQ KVVQDCNSEQ RQHVVTQPVQ GSQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ LQQTQPSVQS HTVLQGGLQQ IQLLQQQQPH VQHQQIPQQL HHHQQQTQQL QPVQQVQQSV QEHQQIKIQP VHVSMDASMN TQVADHQMKL QLLKALQPQQ PLISEQQKML LDLQQQVINS QSAPQQCVQV TNQAISLHNS NTIQYPTQQK VQSHQVQDLT GNVIPNSKSD IATSMGASSL HVAGGHQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE QDTKPYQNVK QTVMIPKTTE HRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLLA NDIGTDKYMD QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH EKDVLLVGDD PWEDFVKCVR CIRILSPQEE MQMRLVGDFG DSFLPNQACS SSDGGHPWRI TGD // ID A0A0E0QWG5_ORYRU Unreviewed; 138 AA. AC A0A0E0QWG5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI10G02940.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI10G02940.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI10G02940.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI10G02940.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI10G02940.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI10G02940.1; ORUFI10G02940.1; ORUFI10G02940. DR Gramene; ORUFI10G02940.1; ORUFI10G02940.1; ORUFI10G02940. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 67 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 67 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 138 AA; 15180 MW; 5A81BB3A7DD05FDA CRC64; MQHGDSLRLK TSHGLKIKIR IKEAASTLYM TTGWKEFAEA TGLETGETIL FRMSSRSKAR VMLLNRQCLI RCPVKTPSTT SSDKNRSLSP SDQLTRASTS AHPSTSKSIP PLRNGTGSTK RSIADTSFCH QLKLTAEN // ID A0A0E0R0F8_ORYRU Unreviewed; 698 AA. AC A0A0E0R0F8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI10G14150.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI10G14150.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI10G14150.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI10G14150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI10G14150.1; ORUFI10G14150.1; ORUFI10G14150. DR Gramene; ORUFI10G14150.1; ORUFI10G14150.1; ORUFI10G14150. DR OMA; ACGGMEC; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 603 683 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75580 MW; EFEDD3B15F51C3ED CRC64; MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF VVSSAPAHDN ISCLLSIGTP QVAEKSDDRK TTPHIMLFGK AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA // ID A0A0E0R1U8_ORYRU Unreviewed; 314 AA. AC A0A0E0R1U8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI10G18030.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI10G18030.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI10G18030.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI10G18030.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI10G18030.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI10G18030.1; ORUFI10G18030.1; ORUFI10G18030. DR Gramene; ORUFI10G18030.1; ORUFI10G18030.1; ORUFI10G18030. DR OMA; WVEKEHM; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 33329 MW; CD54A2DB6709372A CRC64; MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAERY FPLDAAAGAG GGGGGGGGGG GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGSFM FPPTAAPPSH SHHHHQRHHP PLPSVPLCPW RDYTTAYGGG YGYGYGYGGG STPASSRHLL FLRPQVPAAV VLKSVPVHVA AASAVQEAAT TTRPKRVRLF GVNLDCPAAM DDDDDIAGAA SRTAASSLLQ LPSPSSSTSS STAGKKMCSL DLGL // ID A0A0E0R4F0_ORYRU Unreviewed; 284 AA. AC A0A0E0R4F0; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI11G03500.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI11G03500.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI11G03500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI11G03500.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI11G03500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI11G03500.1; ORUFI11G03500.1; ORUFI11G03500. DR Gramene; ORUFI11G03500.1; ORUFI11G03500.1; ORUFI11G03500. DR OMA; QHAGESQ; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 31642 MW; 58025371C8CA4962 CRC64; MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD VVHFERVRGS FGVGDRLFIG CRRRGDAAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS TSGGGSYPTS PANSYAYRRA ADHDHGDMHH ADESPRDTDS PSFSAGSAPS RRLRLFGVNL DCGPEPEADT TAAATMYGYM HQQSSYAAMS AVPRAIHKKI DYEI // ID A0A0E0R5A8_ORYRU Unreviewed; 402 AA. AC A0A0E0R5A8; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI11G05730.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI11G05730.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI11G05730.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI11G05730.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI11G05730.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI11G05730.1; ORUFI11G05730.1; ORUFI11G05730. DR Gramene; ORUFI11G05730.1; ORUFI11G05730.1; ORUFI11G05730. DR OMA; CVFELVQ; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 294 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 294 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 402 AA; 45332 MW; B03BCEEFFB462C01 CRC64; MVVREKQGGR MGKGKGKEKE GDINCFGRSF FRVLLTLQSL ERMKIPSSFN QCLQNQPTGM VSLVDRSGNK WSAELTSDSE GFFFVHGWKE FVRDNSIQCG QFLVFTYDKR SQFSVTVFEP SGIDKISTFS AHPSKNVIIK TESDEGGMVT AAITTEKMAP ALKENNGITG KRTRDVDYLM EDRVVVFKKS SEANVCESSR RKRAGASAGK SKVTSTSHNS TRGSSCSSDE DNSSSKSPNP PFLMRFLSGE VSRRGVSKGQ RQLTVISQRR PVTEAERDHA LQRAREFKSK NPFAVQIMME SYVYVGFFMN IPCEFVRECL PRTNKRITLW DPQGKAWEVN YVYYSDRSVG SFSGGWGKFA VGNNLEKFDV CVFELVQKDN IKVHIYRVVP EITPHKLRSD PK // ID A0A0E0R936_ORYRU Unreviewed; 782 AA. AC A0A0E0R936; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI11G16290.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI11G16290.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI11G16290.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI11G16290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI11G16290.1; ORUFI11G16290.1; ORUFI11G16290. DR Gramene; ORUFI11G16290.1; ORUFI11G16290.1; ORUFI11G16290. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 643 727 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 67 169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 782 AA; 87234 MW; A5DAB4D5E219AC02 CRC64; MQLYNLPWKI LCEVMNVELK AEPDTDEVYA QLTLLPESKQ QEDNGSTEEE VPSAPAAGHV RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRAMR QQTNVPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPAEFVVPY DRYMESLKQN YSIGMRFKMR FEGEEAPEQR FTGTIVGMGD SDPAGWPESK WRSLKVRWDE ASSIPRPERV SPWQIEPAVS PPPVNPLPVP RTKRLRPNAT ALPADSSAIA KEAATKVVVE SEPNGTQRTF QTQENATPKS GFGNSSELES AQKSIMRPSG FDREKNNTPI QWKLGSDGRM QMSKPESYSE MLSGFQPPKD VQIPQGFCSL PEQITAGHSN FWHTVNAQYQ DQQSNHNMFP SSWSFMPPNT RLGLNKQNYS MIQEAGVLSQ RPGNTKFGNG VYAALPGRGT EQYSGGWFGH MMPNSHMDDT QPRLIKPKPL VVAHGDVQKA KGASCKLFGI HLDSPAKSEP LKSPSSVVYD GTPQTPGATE WRRPDVTEVE KCSDPSKAMK PLDTPQPDSV PEKPSSQQAS RNMSCKSQGV STRSCKKVHK QGIALGRSVD LTKFNGYEEL IAELDDMFDF NGELKGPKKE WMVVYTDNEG DMMLVGDDPW IEFCDMVHKI FIYTREEVQR MNPGTLNSRS EDSHANSMER GSVGREMRGC LSTSFAPVQP DGTGYLSCYL AT // ID A0A0E0R937_ORYRU Unreviewed; 852 AA. AC A0A0E0R937; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI11G16290.2, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI11G16290.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI11G16290.2}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI11G16290.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI11G16290.2; ORUFI11G16290.2; ORUFI11G16290. DR Gramene; ORUFI11G16290.2; ORUFI11G16290.2; ORUFI11G16290. DR OMA; SDGRMQM; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 852 AA; 94081 MW; 5523278068FB68C6 CRC64; MATAEVGGGG AGGGGGGGGG GGEDALFTEL WSACAGPLVT VPRVGEKVFY FPQGHIEQVE ASTNQVGEQR MQLYNLPWKI LCEVMNVELK AEPDTDEVYA QLTLLPESKQ QEDNGSTEEE VPSAPAAGHV RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRAMR QQTNVPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPAEFVVPY DRYMESLKQN YSIGMRFKMR FEGEEAPEQR FTGTIVGMGD SDPAGWPESK WRSLKVRWDE ASSIPRPERV SPWQIEPAVS PPPVNPLPVP RTKRLRPNAT ALPADSSAIA KEAATKVVVE SEPNGTQRTF QTQENATPKS GFGNSSELES AQKSIMRPSG FDREKNNTPI QWKLGSDGRM QMSKPESYSE MLSGFQPPKD VQIPQGFCSL PEQITAGHSN FWHTVNAQYQ DQQSNHNMFP SSWSFMPPNT RLGLNKQNYS MIQEAGVLSQ RPGNTKFGNG VYAALPGRGT EQYSGGWFGH MMPNSHMDDT QPRLIKPKPL VVAHGDVQKA KGASCKLFGI HLDSPAKSEP LKSPSSVVYD GTPQTPGATE WRRPDVTEVE KCSDPSKAMK PLDTPQPDSV PEKPSSQQAS RNMSCKSQGV STRSCKKVHK QGIALGRSVD LTKFNGYEEL IAELDDMFDF NGELKGPKKE WMVVYTDNEG DMMLVGDDPW IEFCDMVHKI FIYTREEVQR MNPGTLNSRS EDSHANSMER GSVGREMRGC LSTSFAPVQP DGTGYLSCYL AT // ID A0A0E0RE10_ORYRU Unreviewed; 277 AA. AC A0A0E0RE10; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI12G03970.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI12G03970.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI12G03970.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI12G03970.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI12G03970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI12G03970.1; ORUFI12G03970.1; ORUFI12G03970. DR Gramene; ORUFI12G03970.1; ORUFI12G03970.1; ORUFI12G03970. DR OMA; HHLAQGH; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31079 MW; 17D06FFE695A2C2B CRC64; MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS YDPTSPANSY AYHRSVDQDH SDILHAGESQ READAKSSSA ASAPPPSRRL RLFGVNLDCG PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSVFFQF // ID A0A0E0RH95_ORYRU Unreviewed; 818 AA. AC A0A0E0RH95; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI12G13110.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI12G13110.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI12G13110.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI12G13110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI12G13110.1; ORUFI12G13110.1; ORUFI12G13110. DR Gramene; ORUFI12G13110.1; ORUFI12G13110.1; ORUFI12G13110. DR OMA; FTCYDEL; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 625 709 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 60 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 818 AA; 90820 MW; DE4BE4830BE9F4B1 CRC64; MNVELKAEPD TDEVYAQLTL LPEKQQDGNG SGNGNVSKDK VEEEEVVPPA ATERPRVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSQHPPTQEL VAKDLHGVEW RFRHIFRGQP RRHLLQSGWS VFVSAKHLVA GDAFIFLRGE NGELRVGVRR AMRQQANIPS SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPSEFV VPRDLYKESL KRNHSIGMRF KMTFEGEEAA EQRFTGTIVG VGDSDPSGWA DSKWRSLKVR WDEAASVPRP DRVSPWQIEP ANSPSPVNPL PAPRTKRARP NVLASSPDLS AVNKEVASKV MANSQQNGLP RAFHSQENMN LRSRFGDSNE LNTSQKLTMW SLGSNQEKNN VSVQRELGSQ SWMQMRRPDG SSEILSGFQP LKDTRNPLSS FTSQISGNRS NTWNTINVHY PDQNANHNMY PGTWSLMPPN TGFGVNQQNY LMTPDITLPQ RSLNAKFGGN GAFTSLRAHG IDQRSSGWLG HIEPSSHIDD ASSSLIKPQP LVIDHNVQKA KGSSCMLFGI SLDSPAKPEL LISPPSVAFD GKLQQDALEE DECSDPSKTV KPLDGAQHDS AREKHQSCPD GTKNIQSKQQ NGSSRSCKKV HKQGIALGRS IDLTKFTCYD ELIAELDQMF DFNGELNSSS KNWMVVYTDN EGDMMLVGDD PWNEFCNMVH KIFIYTREEV QKMNPGALNS RSFVVCKSRR RHIHGRKESF RGVVVVAGAL YVSGKPRSTP FVDGACPGIS CPLFVFDKFW VCFVEVLSYC MICPVVVKGA EAKLPRPVRL LACALPPS // ID A0A0E0RJF3_ORYRU Unreviewed; 1075 AA. AC A0A0E0RJF3; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI12G19400.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI12G19400.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI12G19400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI12G19400.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI12G19400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI12G19400.1; ORUFI12G19400.1; ORUFI12G19400. DR Gramene; ORUFI12G19400.1; ORUFI12G19400.1; ORUFI12G19400. DR OMA; ISDDITW; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 333 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 485 584 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 702 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 821 916 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 974 1072 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 333 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 485 584 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 609 702 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 821 916 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 974 1072 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1075 AA; 122632 MW; A8DD0350943894E2 CRC64; MMNNTPCGHE GSMSYHDNHL QSPSESSSFF NISLPPHSPF QELSGVDSTS LLVSDPPNMQ QFCLRCSWTN PKRLAKPSLA IASLSHQHLA FDKTRCMFIL KIENDTLKTI LKMFAKNVQG LISGVAKLEV PDGKTYDVEI SKEHNELVFR SGWEVFAIAY ELEQGDILAF GYSGNSHFKV QIFNPSNCEK ELSCVVMNRS ISDDNHRQSP RRERMNKPST TCMDCITNHY WLHMDDRERY FFKVMMSVSD IKDELAIPKK FAANVRGKIP EQVRLEVSDD VPSSEDIKDP MSSGGLQKSK KSCYVLPMLY NMTSAQESEV LALEKKIQPQ IPLYITAMDK TSVASGSLVF CKDYAVRYLL DQNRTIKLCQ SGGSKTWDIS LDMDTDDLYA LSTGWLDFFR CNLLQEGDIC VFEASKSKRG VALTFHPFKE SHCPKSSEYT LSTKSPTRRV PKRDYFATNL TNLTDQQERK VKNKIKSIQS DIPIFLSVMR SSNCTRQSSL CFSVKYASKY LPHKDQNMRL RLPETKYKCK AALHIDTSTN LHKLLKGWGK FVNDNKLEIH DICLFQLMKN KKKLTMTVHI IRKGEMEKSH RVCKNCVANH YWLHMDNHGK SFIKVMITDF KNGVTIPAKF ARNFGGQMSG TVKLETRNGK TYEVQVAKEL NNLVLRSGWE RFASAYELEK GDILVFIYSG NSHFKVWIYD PSACEKGLPC IITEQLPRVQ QRSISHNNHT QLKRNAKSAK LYVDSSGHSK ETSEINPANS PSWKPTERVP SSEELDEPVD LANVQKATKS FYSLPRMCNM TSAQKAEVDA LEKRIKPQIP FYITVMDKAS ATDGLLAISK DYAVSYLLDK NETIKLCHSG RSMTWDISLD IDTDDQYALS TGWLDFIRNN HLQEGDICVF EASKNKRGVA LIFHPLKQSH HPKPPGCVPS TKFPRHGVSK PNYIVSRFTT LSGQLKIKVE AKVQAIQSEI PIFVAVMRES FIRGRSRYMC FSAKYAAKYL PREKNKIMRL RLPNKSYKYK AVFKINNKVH KLGGGWGKFV DDNKIKLGDI CLFQLMKNKK KLMMMVHIIR KSEFC // ID A0A0E0RJF4_ORYRU Unreviewed; 354 AA. AC A0A0E0RJF4; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI12G19410.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI12G19410.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI12G19410.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI12G19410.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI12G19410.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI12G19410.1; ORUFI12G19410.1; ORUFI12G19410. DR Gramene; ORUFI12G19410.1; ORUFI12G19410.1; ORUFI12G19410. DR OMA; NFKGQIT; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40499 MW; FE89ACCC695B0394 CRC64; MGEKGCESCR KWQEHYYREH MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL KSPSGETWRV GVAKVADELI LKSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTGKKNSYMC KNFNSIGGQV AGQYLSSDSE DTSTPSVLIG SPHKASTSKK LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL QPGNPVFVVV LQTAHVRRRN ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN TTRGFNCHRW IKFIRENRLR EGNVCIFELM KGARRPTMTV HVIGKADNRF VLLG // ID A0A0E0RJG1_ORYRU Unreviewed; 366 AA. AC A0A0E0RJG1; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORUFI12G19440.1}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI12G19440.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI12G19440.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI12G19440.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI12G19440.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORUFI12G19440.1; ORUFI12G19440.1; ORUFI12G19440. DR Gramene; ORUFI12G19440.1; ORUFI12G19440.1; ORUFI12G19440. DR OMA; TTMVVHV; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41904 MW; 867B280C1CB07DE9 CRC64; MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL KAPSGETWRV SVEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT KTNPNKDDPF STGKEPEDPN SSRSHVKHEM IEEEKSDDDD EHADYEHADY YYSRFANYLT GEEREEIFSL VSLQPGNPVF VTVLQAPQIH RKGLLIVPSG FAADHLDSRS QEILLMRPNK KEKWYVKYYH ASTTRGFNCQ RWIKFIRENR LREGYICIFE LMKGARRVTM TVHVIGKVDD RFVLLG // ID A0A0E0RJZ5_ORYRU Unreviewed; 899 AA. AC A0A0E0RJZ5; DT 27-MAY-2015, integrated into UniProtKB/TrEMBL. DT 27-MAY-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza rufipogon (Brownbeard rice) (Asian wild rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI12G20920.1, ECO:0000313|Proteomes:UP000008022}; RN [1] {ECO:0000313|EnsemblPlants:ORUFI12G20920.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=W1943 {ECO:0000313|EnsemblPlants:ORUFI12G20920.1}; RX PubMed=22408737; DOI=10.1002/ece3.66; RA Waters D.L.E., Nock C.J., Rice N., Ishikawa R., Henry R.J.; RT "Chloroplast genome sequence confirms distinctness of Australian and RT Asian wild rice."; RL Ecol Evol 2:211-217(2012). RN [2] {ECO:0000313|Proteomes:UP000008022} RP NUCLEOTIDE SEQUENCE. RA Zhao Q.; RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:ORUFI12G20920.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; A0A0E0RJZ5; -. DR EnsemblPlants; ORUFI12G20920.1; ORUFI12G20920.1; ORUFI12G20920. DR Gramene; ORUFI12G20920.1; ORUFI12G20920.1; ORUFI12G20920. DR OMA; GSKQPTN; -. DR Proteomes; UP000008022; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008022}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008022}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99862 MW; 18B0C9281D9D9EB3 CRC64; MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRYG DPSKQHPATL QYQQTHNLNS GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE LQQQQRQHVL QEQSSQEMQQ QLPSSDHHVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG NSDPPLHLHN NFHNFSNQEA SNLLILPRSS QLMASDGWPS KRLTLESAVH PEAPSMHPKI EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASVAPLDY // ID A0A0J8B1W5_BETVU Unreviewed; 462 AA. AC A0A0J8B1W5; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS94981.1}; GN ORFNames=BVRB_013540 {ECO:0000313|EMBL:KMS94981.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS94981.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS94981.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS94981.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090624; KMS94981.1; -; Genomic_DNA. DR EnsemblPlants; KMS94981; KMS94981; BVRB_013540. DR Gramene; KMS94981; KMS94981; BVRB_013540. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 194 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 359 462 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 194 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 359 462 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 71 105 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 462 AA; 54009 MW; 783E6CA49A1E16DF CRC64; MNILNDIHDE SVKQGVGLPP NFRLYYKNPR TKQRVELYKD VQMSNMWGGF AGKDAIEIFI EETNQPLRFV FKFVLELREQ AEKEREEERR RQEEEEKILR ELENQEPPLA IEIPVYSVDD LSVMEWYRVY SEEEVVMGES EPQPDATQPE YPPSSPRSSP VTQPPQPPSS PLPSSATQPP RPPSKKRRDK MAPSFYKKMG VCSTQDDKIR IPAKYVKRYY EKQFAKDYVN LRAADGRVWR VELLKVSGTL WLSKGWEVFL ESYSIEYGYL VLFSYKEIED EFHVNIYDKT CCEIVHEFAF ENHTDKAEEV VGFSSEHEDI DRDDDDDDDD DDDCIVPYSE EGPNGSTKEF EEFESLNPHF KSIVRRWSLT SWGLTIPLQY AREHLDGKNR EKIILEGPGK MRYYNVNVNV YLRNCVKEKA LISGSVMRKF FTDNELKLGD CCVFELIHPQ SNTYKATIFR AP // ID A0A0J8B1X4_BETVU Unreviewed; 328 AA. AC A0A0J8B1X4; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95029.1}; GN ORFNames=BVRB_013090 {ECO:0000313|EMBL:KMS95029.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95029.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95029.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95029.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090587; KMS95029.1; -; Genomic_DNA. DR RefSeq; XP_010667920.2; XM_010669618.2. DR EnsemblPlants; KMS95029; KMS95029; BVRB_013090. DR GeneID; 104884916; -. DR Gramene; KMS95029; KMS95029; BVRB_013090. DR KEGG; bvg:104884916; -. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 229 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 229 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 328 AA; 38102 MW; CDC516505A04463C CRC64; MRSSRLMKIQ KTEAPTNCDP KIQFASEDNK PYFFKIIVSP FTQKLNLRIP VEFVKKYGRH LSDIIYLSVP NSEQPWKVQL EKTDNKEMFL GKGWQDLMEF YNMMFGHFLL FRFDGGSQSQ FHVIIFDKSA TEIDYPMRKV SCAMKRKYDL KNKVVEEENE EDDISIEILD EFSPKLKQVK TTVSLDSSAI YDVECSSYKS KGNDKISVDM RQKRLKRKLD AFVSSYPHFK SIMYHSHVTY KYKLAVPSSH ASIYFSSKCK EIILNGPNGK SYSVKVYVGK KITELLNGWK SFVLDNDLQV GDACIFELIN KNSRSKNAYK VSIFRISS // ID A0A0J8B468_BETVU Unreviewed; 391 AA. AC A0A0J8B468; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95979.1}; GN ORFNames=BVRB_003390 {ECO:0000313|EMBL:KMS95979.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95979.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95979.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95979.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090420; KMS95979.1; -; Genomic_DNA. DR EnsemblPlants; KMS95979; KMS95979; BVRB_003390. DR Gramene; KMS95979; KMS95979; BVRB_003390. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44587 MW; 76624E9EF8DB09FE CRC64; MKELKAKLRK FKRNSSTSSS KGLPVPFCKM YLPQNDTYFI LENQYGKKYR VKYLARKTAL SGGWRGFSIA EELSQGDVLV FHLIQPTKFK VYVLRSDLTE NDKPRVIQNL PAEVVQRGLE VGTLEPSIET HRPSSISEDD SLAEMSKSNR KNPSQKDVSK SNSGTPKHVL YPDAVGDGGI ASFDEFVILL EDLLKKEYDL PHNLKHSYYK LCCRNEFLHI HLLEGINPFL IAGIIIETVN VALAMKSCEL HTSKNEFSIW DEKLKSLKIL GMEVGFLVSH LDNLQRVAYD PEATRNRQQY LELCSEHAIS EREINNVEAK LSELIGVFDK RADEIKKLKS EIKNHKSKFL EQVTYNCRCD SVGELNKVGA FPSRESEAFW ARTMGHHPRG H // ID A0A0J8B473_BETVU Unreviewed; 401 AA. AC A0A0J8B473; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95984.1}; GN ORFNames=BVRB_003440 {ECO:0000313|EMBL:KMS95984.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95984.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95984.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95984.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090420; KMS95984.1; -; Genomic_DNA. DR EnsemblPlants; KMS95984; KMS95984; BVRB_003440. DR Gramene; KMS95984; KMS95984; BVRB_003440. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 45959 MW; EDD5993CBD20EB50 CRC64; MIIEHPATIS TMKQLLESHV SGGYNLALPT PFCRAHLPPK DTIMVLETKT GEQYEAKYLA RHFRLSGGWR KFARDNKLEA GDVVVFTLVE ATKFKVYIIR TSANEVTLPV HLLNPVNHVK QSVSSQTTNQ KLIIYRRGKE HQVAEIYNRR SLRLKLKNAG AGSMLYPGEI LFSNITNFED FKAIMHELLQ NHKLPYSTLH DYYELCCSQN AFLHAHLLKG INPTLNYQII TEAIKRIIFE TVSIANALKT CKLSTFLYKC SLWEDTLNAY EGLGMNVGFL LARLHHLRSL VFSLEGAADH RSRYKEASHE RGLAEGEVKK LKLVLAKLRK VSDDMKLKPL EDKYREGNSW LACVQAEITN LEVLLAELQK FFSQYDAHIE SLKLNAKRHE FEFQEELSAP W // ID A0A0J8B5C2_BETVU Unreviewed; 437 AA. AC A0A0J8B5C2; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS96191.1}; GN ORFNames=BVRB_001010 {ECO:0000313|EMBL:KMS96191.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS96191.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS96191.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS96191.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090400; KMS96191.1; -; Genomic_DNA. DR RefSeq; XP_010666268.2; XM_010667966.2. DR EnsemblPlants; KMS96191; KMS96191; BVRB_001010. DR GeneID; 104883436; -. DR Gramene; KMS96191; KMS96191; BVRB_001010. DR KEGG; bvg:104883436; -. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 329 424 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 329 424 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 437 AA; 49831 MW; D1D79CAC83B58B7F CRC64; MDNKRKLSFK RASFMKILED SFINKLPIPP AFAKIFEECI PPWLILEIAG TRKCWRVDIE EDGNGRMYLS CGFDCFVKAH SLEAGNFLLF ELEEPSILQV KIYEKDGSEK AVGTTFETDY EGSAFESPRR TPIIHQEGES SPWYTMPSVQ YEAYEKQQNA IGGNKRKKGI VSATEHGLCF SVTWRNANHF IYYLTIPKAM LSGKILSNKD RVILQNRDGN SWPVELKMRP DGRMDLHKGW RQFVEDNNLT TGDTLILEFV SNNVIQVHVK RAFQVGNPPQ SGQDCQIEDT QFFNMACENE ELAANYTTEN NTPVTVAKTE RFSSELIRSS FAITWTQKTR NSYLHIPKAI ANKQKLEHKD TVVLCDPEGK QWLMEVRTRQ SDGRVGVGRG WADFAKAYGI GVGDTLIFEF VTDHMMKVHV IKASTEGTIK QELLQLD // ID A0A0J8B623_BETVU Unreviewed; 227 AA. AC A0A0J8B623; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95333.1}; GN ORFNames=BVRB_009300 {ECO:0000313|EMBL:KMS95333.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95333.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95333.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95333.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090484; KMS95333.1; -; Genomic_DNA. DR RefSeq; XP_010667517.1; XM_010669215.2. DR EnsemblPlants; KMS95333; KMS95333; BVRB_009300. DR GeneID; 104884539; -. DR Gramene; KMS95333; KMS95333; BVRB_009300. DR KEGG; bvg:104884539; -. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 25391 MW; 0B88A8AFB2B926FF CRC64; MGNLSYEECR QKRVEENKKR LEDLNLFHLS QALKNLSPKS SPMKKVGKPR TVEKKMVAVR RSPRVANSPA PVYAEVSVTR ISSPRKNYGV VRARDLSNRV IATDDVREYA IEEAEKLNAK LNEEGFPTLV RPMLPSHVTG GFWLGLPSDF CRTSLPRNDG MVTLVDEVGE EYPVVYLARK RGLSGGWKGF AETHELVDGD AVIFQVISHS VLKVYIIRGS GQEVGTH // ID A0A0J8B7G3_BETVU Unreviewed; 959 AA. AC A0A0J8B7G3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS97189.1}; GN ORFNames=BVRB_7g178520 {ECO:0000313|EMBL:KMS97189.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS97189.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS97189.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS97189.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090340; KMS97189.1; -; Genomic_DNA. DR EnsemblPlants; KMS97189; KMS97189; BVRB_7g178520. DR Gramene; KMS97189; KMS97189; BVRB_7g178520. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 443 536 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 864 959 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 443 536 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 864 959 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 959 AA; 108036 MW; D8133CA8D81F649B CRC64; MEACVECSRS CLVLHRTKLD PYPIVSSFFK VMFGNEFSEV LIVPPQFANT VKALEGQSTY LEDSTGQKWK VGLCNVNGSL AFQNGWHEFS VDHSIEVGDF LVFHHFKGSH FLVEIFGRSG CEKPVLFGGK NYQKTREKLS RSDPGPPNIV VNRKKDHLQN VKNSPETKRV YVPREDISNK RPKLAPTTDF LVESYFMTNR DVCFTREDDR SDLFDLSVFE MPEMKEDAGK RSYEISSEAD RSTKERAEIL NNTVSTDPMP LNVSMPIKSI ASPQSEVSAP ANSCGRTKIG KQEHNSDENV YVNSVADNLL CASAILSSIE KDPKLRNETL GRHSTSVEED KGQKDMTVNP ETPDLCVSSS AASFKITYPE QKHNEPFLVL PKPLPLNVYK QGEKLGQNLV VLRDPGGRLW PNLMARDVGV CDKCLRNCLL NHKRKHDLAP VVPSFFKVML NESCSEVLIL PPKFSRMFKS LVGKTTYLKD STGQTWEVVL SVVEDSLGFQ KGWRKFYLAH GIEQGDFVVF HYIAGSHFTV EIYDRSAYEK NFPGEESYQN KRPKTTRESD PDLYHERQPP QEYDLSDVCD VPRSHNGISP RQDDLNYASK SLKVVGNVRG RENINKIPQV VPEADLLLEP CFITGRETGF AREDNREHLL DLSAFELPDF STEFDRDHLS DLSTSKMTIK KVDATEDNRE HDHLSDLSIF KMTDKKVDAD HMGKLQVQGK KCSQVSGALH KAQNTDASID IKKRPIIQGN GTVLSTTSQK NEVNSRSECK PVPRSSPRFD MSLNAIGPLK TIRKSDTLEF SAASGYSQPP GGKMRIVKQE PKEFNKEAER NYRDLGVNLN PMENNVNIIN IVKSEPVDSW ESASARITCL VPPDNESFLE LPEPLPIKGR RSSNKKLIYL RNPSGKDWPV LCHIRYGLQI LSSGWNAFTK ANNIRPGDVC AFVVDNIDKG IFRVEVLKA // ID A0A0J8B7N6_BETVU Unreviewed; 442 AA. AC A0A0J8B7N6; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95978.1}; GN ORFNames=BVRB_003390 {ECO:0000313|EMBL:KMS95978.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95978.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95978.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95978.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090420; KMS95978.1; -; Genomic_DNA. DR EnsemblPlants; KMS95978; KMS95978; BVRB_003390. DR Gramene; KMS95978; KMS95978; BVRB_003390. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 442 AA; 50730 MW; 1B5414CBA72D3E23 CRC64; MKELKAKLRK FKRNSSTSSS KGLYYQKREV KRQNIMPSII RQAEELRSRL EANYPCFIKP MLKSHVASCF WMGLPVPFCK MYLPQNDTYF ILENQYGKKY RVKYLARKTA LSGGWRGFSI AEELSQGDVL VFHLIQPTKF KVYVLRSDLT ENDKPRVIQN LPAEVVQRGL EVGTLEPSIE THRPSSISED DSLAEMSKSN RKNPSQKDVS KSNSGTPKHV LYPDAVGDGG IASFDEFVIL LEDLLKKEYD LPHNLKHSYY KLCCRNEFLH IHLLEGINPF LIAGIIIETV NVALAMKSCE LHTSKNEFSI WDEKLKSLKI LGMEVGFLVS HLDNLQRVAY DPEATRNRQQ YLELCSEHAI SEREINNVEA KLSELIGVFD KRADEIKKLK SEIKNHKSKF LEQVTYNCRC DSVGELNKVG AFPSRESEAF WARTMGHHPR GH // ID A0A0J8B8H1_BETVU Unreviewed; 638 AA. AC A0A0J8B8H1; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_5g125780 {ECO:0000313|EMBL:KMS97554.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS97554.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS97554.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS97554.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090305; KMS97554.1; -; Genomic_DNA. DR RefSeq; XP_010695583.1; XM_010697281.2. DR EnsemblPlants; KMS97554; KMS97554; BVRB_5g125780. DR GeneID; 104908192; -. DR Gramene; KMS97554; KMS97554; BVRB_5g125780. DR KEGG; bvg:104908192; -. DR KO; K14486; -. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 526 607 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 638 AA; 71317 MW; 47F7423AA08FC508 CRC64; MANGMAFGQP NMSSGARDSG GVDVLYPELW RACAGPLVEI PRLREKVYYF PQGHMEQLEA STNEELNQRI HMFNLPSKIL CRVLNIDLLA EKETDEVYAQ ITLMPEADQT EPLKPESCEP EPPRPAIRSF SKVLTASDTS THGGFSVLRK HANECLPPLD MTQQTPTQEL AAEDLHRYVW RFKHIFRGQP RRHLLTTGWS HFVTSKRLVA GDSFVFLRGE NGELRVGVRR VARQQSSMPS SVISSQSMHL GVLATASHAV TTHTYFVVYY KPRMSQFIIG LNKYLESVDS GYKVGMRFKM RFEGEDTPER RFTGTIVGVD DLSPQWKDSR WRSLKVQWDE PTSIARPDRV SPWEIEPFGS SAPLDVTDTV VKNKKPRPSI EIPNHAFKSV NDSTPWNSSN DIVQGEVEDC KSATAWSVFP GYTTPTPTKQ SNDLAENGKK TETLASYRLF GIDLMKPSTP TTQEDEYVQE PIGTGDSTEE LGRSSDSGAA DSEQKSDLSK SSQEKRQILQ LSSPRDLQSK QGSSTRSRTK VQMQGVAVGR AVDLTILESY DQLIDELEEL FDLKGELRPR DKWEIVFTDN EGDMMLVGDD PWTEFSSMAK KIVICSSQEV KKMSAGSKMA ASSLEGDGTV VSMESSGN // ID A0A0J8B8P3_BETVU Unreviewed; 581 AA. AC A0A0J8B8P3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS96192.1}; GN ORFNames=BVRB_001020 {ECO:0000313|EMBL:KMS96192.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS96192.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS96192.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS96192.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090400; KMS96192.1; -; Genomic_DNA. DR EnsemblPlants; KMS96192; KMS96192; BVRB_001020. DR Gramene; KMS96192; KMS96192; BVRB_001020. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 251 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 398 492 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 251 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 398 492 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 581 AA; 65936 MW; BC8462B67820CC6F CRC64; MLDISLATMW PRGLINSVKI VNLLLQFNNS FKHKKEGKQK TEMESDGSHK QLHKAISVNM QCEMQNKPMF SCKGASFIKV LGRDFSKQLQ LPEEFTANIT GYVPHRFIIE SGTTNKCWRV EVEKDGDGRM YFRDGWADFV EFHSLEVGNI LLFEYEEQSI FQARIYGRNG CEKTLLLDSK GGQCKPLKTI NDDDGEESEA LDEPVIVKCS RQKTRSLSSR KYGNGIYKKR TVNRDYRRTA KVSVTQNNLC FSVIMHYRKR HQFNQLTVPK AVSLKMKLPS KDELKIQDAQ GKCWTLALGH RRDGRALFSQ GWKEFLKDNN VAPGDKLKFE FMSDEIVQCH VTRASEVNEH QSNEPTRSSD MDCNLDKPNT RIVSRAPKNR AGGISMTSKR RMSCESGSSF SVMWRDSCAR TYLHMPKAIV RDQNLMNKEN IVLRDPEGKC WPHEVKKLTG NRVALAKGWV EFWKGHGLKT GDFLNFEFVS ENLVQVNINR GKPQHEPNVE DTVIYLDAID DEEAAAIEPE AVITQQAGLQ AGIEPEVGIT HEGFDAAFSA EAGITQEGYD AAMETEAFIT LEAFDEATTQ V // ID A0A0J8BA70_BETVU Unreviewed; 791 AA. AC A0A0J8BA70; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS96797.1}; GN ORFNames=BVRB_8g199800 {ECO:0000313|EMBL:KMS96797.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS96797.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS96797.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS96797.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090361; KMS96797.1; -; Genomic_DNA. DR EnsemblPlants; KMS96797; KMS96797; BVRB_8g199800. DR Gramene; KMS96797; KMS96797; BVRB_8g199800. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 309 410 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 537 587 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 309 410 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 87828 MW; 4C573A101210E0BB CRC64; MSSKLCFNSE CKVSNSETWK KGWRLQNHNF ANLCHRCGSI YEEGRFCETF HKYASGWRCC ETCEKRVHCG CIVSLHAFVV LDAGGIECML CANKYVTLTP NQMGTPPPLP DWLAQSPVMN GNQNPGLASN GLWHQGKNLF NITTNDLNSG SRMSFEVGMS TGLERLESNK PRNLSFSNGS LKHNGSEKPG CNSAVVNCKE EPSHMHQSTL KDGQCALLSG KGSSSLREDN DAKDHSVLSQ QLYPQDIARR QLSADDNNAD SSCQSLICNF KPVEVGVRKD LNARYRPKIS GEESKLISGS THSAITPLFE KILSASDAGR IGRLVLPKKC AEAYFPPICQ PEGLPLKVQD INGKEWTFQF RFWPNNNSRM YVLEGITNCL QSLQLRAGDT VSFGRTEPEG KLILGFRKAS CGPQSDQGVQ AVKSGNEMHA GQHAGYQKPK HKEDLTQSHS KVNKAPGASS FIPIKRKNSM LSSKRKRERA DNVDLLGLKV TLEEAQGLFR SPPRHSPCVV IIEDFKFEEY EDAPVIGRPT ITIRDYLGED IQWTQCDNCL KWRKLPYDSL LPANWTCVEN AWDFERSSCE AAQELTVKQL QDLLSINNSE SIGAAAFKKL QDAELDAHGP EDLEALDRFA IEGYCEVSPA STPPTSKHPR HRLGCSCIVC NQPPSGGPKH PQNCGCKVCM TVRRRFQTMM IRRGRNHTER ENVIQEFKSQ GNTRSSVKSD PAIEVLKSSS KVYVNGDRKV ISTSVEGQID LNTQPQREEV STCCNSMALK KQDTPDRGVC KLGDMDPKIS G // ID A0A0J8BDH7_BETVU Unreviewed; 277 AA. AC A0A0J8BDH7; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS99399.1}; GN ORFNames=BVRB_2g045220 {ECO:0000313|EMBL:KMS99399.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS99399.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS99399.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS99399.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090219; KMS99399.1; -; Genomic_DNA. DR EnsemblPlants; KMS99399; KMS99399; BVRB_2g045220. DR Gramene; KMS99399; KMS99399; BVRB_2g045220. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31833 MW; FA5E9BA56EDC66E9 CRC64; MRSSSKFNSS CNNNARFMQP LLDFFLNTFS IPVSFMEHLE MKTKLKDDPP ESVVLTTEDQ PHRHWIVKLE GGRHFKDGWK EFCLHHDLQV GDFLVFTHQL NFIFQVSVYN AATACQRCYS SSNSHQQLKS IHKPTGSKTK KVRLKPNSRD RISGKRKARE AQAQATPTAE GQDIYGQITL TSFAIKRSTI YLPKGFVRSC GLINKNCFVK LIYGDGKAWK VKLSYRKYDG QAYIHGGWKQ LQAANNLRPR DIICFQLLKR GRWPIMKCHK LSSGNES // ID A0A0J8BEI7_BETVU Unreviewed; 147 AA. AC A0A0J8BEI7; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS98478.1}; GN ORFNames=BVRB_4g091730 {ECO:0000313|EMBL:KMS98478.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS98478.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS98478.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS98478.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090251; KMS98478.1; -; Genomic_DNA. DR EnsemblPlants; KMS98478; KMS98478; BVRB_4g091730. DR Gramene; KMS98478; KMS98478; BVRB_4g091730. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 147 AA; 16692 MW; F95FCF2237D6D2D2 CRC64; MMKEEQTSEP VSEKTCSDDE IEPLTGKPFF DIVLCKSHVF PSYHIAVPSE STRLLPTKSV PLTFTRGKRS WKLTYMGNGA HLKRIDSSSW KEFVIDNRLK VGDACVFEIM ERSDTSLKFK VQVLRGDFPS VLLDREHGSS NNPVIIE // ID A0A0J8BES0_BETVU Unreviewed; 160 AA. AC A0A0J8BES0; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS98477.1}; GN ORFNames=BVRB_4g091720 {ECO:0000313|EMBL:KMS98477.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS98477.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS98477.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS98477.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090251; KMS98477.1; -; Genomic_DNA. DR RefSeq; XP_010694213.1; XM_010695911.2. DR RefSeq; XP_010694214.1; XM_010695912.1. DR EnsemblPlants; KMS98477; KMS98477; BVRB_4g091720. DR GeneID; 104907052; -. DR Gramene; KMS98477; KMS98477; BVRB_4g091720. DR KEGG; bvg:104907052; -. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 160 AA; 18032 MW; 0A982F14F71C0C38 CRC64; MSEGLELMQK NEQVCALESA SVPPDSCHDD DIDPLSGKPY FDLILTRSHV GDAYRFQLIL PQPFTRLLPN KTVPVILTCG GRSWETTYLG DNAAYQKKFD QRWRAFAEDN MLKVGDACVF ELMECRDTSL KFKVQVLRGD FPSILLGDQD GTIDNPIVVE // ID A0A0J8BGF7_BETVU Unreviewed; 601 AA. AC A0A0J8BGF7; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_2g047650 {ECO:0000313|EMBL:KMS99122.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS99122.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS99122.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS99122.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090236; KMS99122.1; -; Genomic_DNA. DR RefSeq; XP_010693396.1; XM_010695094.2. DR EnsemblPlants; KMS99122; KMS99122; BVRB_2g047650. DR GeneID; 104906353; -. DR Gramene; KMS99122; KMS99122; BVRB_2g047650. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 601 AA; 67120 MW; BE1CDC2F2B2C0610 CRC64; MNEVECCLDP QLWHACAGGM VQMPVINSKV IYFPQGHIEH AQVNIDLRKY PKIPPLIPCK IIGIKYLANY ESDEVYAKVR LVPLRGNEFD TTCDDGFVGN NEMEEGSEKP VSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG VTWKFRHIYR GTPRRHLLTT GWSNFVNQKK LIAGDSIVFL RTENGDLFVG IRRPKRELLT CGSAYGGFAA FLRNEENNKI MARNLEGMNS GNNTEKVRAE SVVEAAYLAA DGKPFEVVYY PRASTPEFFV KTAAVRAAMR LQWCAGMRFK MAFETEDSSR ISWFMGTVSC VQVVDHVHWP NSPWRLLQVA WDEPDLLQNV KRVNPWSVES VASMPTVHMS PFSPPRKKLR VSQVPEIPFA DQYLLPTFPN SAYNPSGSVF GLAEVPAGVQ GARHAHFRQF LSDHLNKVNY SSLLTNGPEL KSLHCGISAK HKIRENISSF LTMATLKESP KENDMLTPKF MLFGKPILTK QQISQSSSSD SMRTVSDSNL EKTGNNASED SNDTLNKPSG GNFPCKVFME SEDVGNTLSL SSLGTYDGLY KKIAHHIWQG KILEAEQCAL S // ID A0A0J8BH56_BETVU Unreviewed; 278 AA. AC A0A0J8BH56; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS99397.1}; GN ORFNames=BVRB_2g045200 {ECO:0000313|EMBL:KMS99397.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS99397.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS99397.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS99397.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090219; KMS99397.1; -; Genomic_DNA. DR EnsemblPlants; KMS99397; KMS99397; BVRB_2g045200. DR Gramene; KMS99397; KMS99397; BVRB_2g045200. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 168 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 168 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 32088 MW; 7526C7420DE6A62D CRC64; MQKRSSQEKL SSCCNNVRFM QPLIPGFINT FSIPVSFLKR LDEELHGHLL KEVELMTEPQ RRWVVKIEGG RHFKDGWQEF CLHHNLKVGD FLVFTYQTDF LFHVSVFDHA TACQRHYPPS SHQHHLNGVK GSGKKRGLKL NTTCKRRQLE AEVAATEVPS SDQNQFPSCQ VTLTLSSFNR KIIYLPMRFV RSSGLLNRNC NITLVDGEEM SWKAKLNFRK DNSQPYIVQG WKYFQAANCL KPGNVLSFQL LEDGTVPILK CYRLDQQTSD RSQVPPEN // ID A0A0J8BHV4_BETVU Unreviewed; 313 AA. AC A0A0J8BHV4; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT00537.1}; GN ORFNames=BVRB_9g218350 {ECO:0000313|EMBL:KMT00537.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT00537.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT00537.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT00537.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090197; KMT00537.1; -; Genomic_DNA. DR EnsemblPlants; KMT00537; KMT00537; BVRB_9g218350. DR Gramene; KMT00537; KMT00537; BVRB_9g218350. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 208 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 208 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 36058 MW; DB40A3862C121EB3 CRC64; MSSRPYSTRK KSACSPNDTD EIKSWRFLRV MPTSFLQESM QRIPSEFASK FSSEPSTFAS FSVPNHSSWT IKVIKKKNKL QLSTGWDRFV KDNSIHDGDM MIFKYKGNCE FKVNIFDPVG NEIVQCHNYS ESGKRKIGSC SESRQEVTSS INDEKEEKVC KEYHGRNPCS ETKLRNKNLS SPMGSKQKTA TNHEESSSKL ETLLLSLENP FFFAKTIRLR NELLIPSDVI RTFNIHFDEA LSVEDPKGRK WEARIVTWKD GRTRLTGWKQ FCKYNLVRDQ DACVCEFIPS NGTTCYAIKV HIFRDHKMPA TVS // ID A0A0J8BI31_BETVU Unreviewed; 876 AA. AC A0A0J8BI31; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_1g022070 {ECO:0000313|EMBL:KMS99638.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS99638.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS99638.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS99638.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090211; KMS99638.1; -; Genomic_DNA. DR RefSeq; XP_010692716.1; XM_010694414.2. DR EnsemblPlants; KMS99638; KMS99638; BVRB_1g022070. DR GeneID; 104905779; -. DR Gramene; KMS99638; KMS99638; BVRB_1g022070. DR KEGG; bvg:104905779; -. DR KO; K14486; -. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 768 852 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 876 AA; 97074 MW; 42C798A6900FA41A CRC64; MGSVEEKIKS SGGPPPSSLL EEMKLLKEMQ DHSGARKPLS SELWHACAGP LVSLPQVGSL VYYFPQGHIE QVAISTKRPA TSQIPNYPNL PSQLMCQVHN VTLHADKDTD EIFAQMSLQP IKTDKDVFPI PDFGLKASKH PTEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTMQP PFQELVVKDL HDNTWTFRHI YRGQPKRHLL TTGWSVFVGS KRLRAGDAVL FIRDEKGQLM IGVRRANRQT TTLPSSVLSA DSMHIGVLAA AAHAAANKTP FTIFYNPRAC PTEFVIPANK YRKAVYGTQV SAGMRFGMMF ETEESGKRRY MGTLVGISDL DPLRWPGSKW RNLQVEWDEP GCGDKQNRVS AWEIETPESL FLFPSLTSGF KRPFHPGFFG GELEWGNSMK RPFIQIPDMG AANLSYASLP NVWSEQLVKA MMRPENMSYP SMLASCSPSP MLQETKARID TAMLQKPQIA SSQTVPVQNY PLQQFNQREL GDMSGIEQPS KTNQPTNDAD KTKLEPLCEP SQLSQLPSTG HCNEERQTSN PSNPPSQNNF EIKDNSHKLM QPPAMSSVFQ SQLTDIPPTD LSSLNGLFPY LDAPDWLPYP SATIPEVIDP SLSSIGQDLW DQNQNLRYPA QSDQFGSYSQ LSDETNNQSG IYSCIDLDVG NGGNAMVDAS ISNAVLNKLC PSKESSLQYS SDCLVGNFSS SQDLQSQITS ASLADSQAFL QDFPDNNNSG GTSSSNMDFD ETNLLQNNSW QQVVPPMRTY TKVQKTGSVG RSIDVTSFKD YEELRSAIER MFGLEGLLND PRGSGWKLVY VDFENDVLLV GDDPWEEFVG CVRCIRILSP AEVQQMSEEG MQLLNTNAIP GITGTT // ID A0A0J8BKA5_BETVU Unreviewed; 268 AA. AC A0A0J8BKA5; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT00538.1}; GN ORFNames=BVRB_9g218360 {ECO:0000313|EMBL:KMT00538.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT00538.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT00538.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT00538.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090197; KMT00538.1; -; Genomic_DNA. DR RefSeq; XP_010690981.1; XM_010692679.1. DR EnsemblPlants; KMT00538; KMT00538; BVRB_9g218360. DR GeneID; 104904434; -. DR Gramene; KMT00538; KMT00538; BVRB_9g218360. DR KEGG; bvg:104904434; -. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 268 AA; 32234 MW; 3D5985288987EB7E CRC64; MVRVKKRRRE KPPNLLSFSG KPFRFFKIIL HCLQEDRLKI PEKFAKKFSS QLSTVVTLTI PTGLSWKIRL SRCTEDKLYF DKGWPIFMEQ TNIKHGYFLE FEYEGNNHFE VHIFSLSCCE IDYPIHQYDD HQRRKQNRND DFKVKEEQEN EEDEEKNDIH RATTMSKNKC KKPSFTITTR KYCVSYLHMP KSFTNEHMKG KSYKFANLQL GEGKKWRVTC YFHSESFRLI GPGWKKFRQE NNWSEGESYT FVLVDKKRNS VTFKVFKV // ID A0A0J8BL07_BETVU Unreviewed; 799 AA. AC A0A0J8BL07; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_9g208190 {ECO:0000313|EMBL:KMT02090.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT02090.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT02090.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT02090.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090184; KMT02090.1; -; Genomic_DNA. DR RefSeq; XP_010689575.1; XM_010691273.2. DR EnsemblPlants; KMT02090; KMT02090; BVRB_9g208190. DR GeneID; 104903260; -. DR Gramene; KMT02090; KMT02090; BVRB_9g208190. DR KEGG; bvg:104903260; -. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 671 753 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 799 AA; 89067 MW; D5DC33DE85CC62E5 CRC64; MEIDLNHEVS EVEKIAYCYG DCEKGIYGCC VSSSSSSCSS NSSPSAVTSY MELWHACAGP LISLPRRGNV VVYFPQGHLE QVVASSSPYS PVDLPTYDLP PQIFCRVANI QLLANKENDE VYTQLTLFPL PEFGRISLGS KEVEGLGGEE DAAEVLPKST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKLQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSVFVSQK NLVSGDAVLF LRGEDGELRL GLRRAIRPKS GVPDSVIGKQ SMYPNVLSAV VNAVSTKTMF HVFYSPRASH PEFIVPHQRY VKSFSNPISA GTRFRTRIEV DESPERRCRG IVVGVNDIDP YKWPNSKWRC LLVRWDEDIV SDKEERVSPW EIDPSVSLPP LSIQSSPRIK KLRTGLPSSP SNPVDSGGLG NLDFEESVRS SKVLQGQENV SFISPPYGCD KVHSMLDNEP GAAGQQSLSS TRLPPINVSE FRSLAQPMTY TGILESNRFP KVLQGQEICP LRSLTGKMNF NPSAWIKPSL ATSYFNLYQG PKTSFYPLAS EGVRNMYFPF DIYKSDQDSV TVPCKNTMAK ENSVFNLSSF HSNGFRKKDQ NPNIENEDRP AENMYVHNSL NTSRNDQKDA PGNGPRPHSK LFGFPLERET SSTNSEICSR RSCTKVHKQG SLVGRAIDLS KLKSYADLMN ELEHLFGMEG LLQDPAKGWR ILYTDKENDM MVVGDDPWNE FCDVVSKIHI YTREEVEKMT AGMVTDDNQS CLEEAPSMLD ASKSSSVGQP DSSPTETKN // ID A0A0J8BL74_BETVU Unreviewed; 342 AA. AC A0A0J8BL74; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT00794.1}; GN ORFNames=BVRB_9g220730 {ECO:0000313|EMBL:KMT00794.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT00794.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT00794.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT00794.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090197; KMT00794.1; -; Genomic_DNA. DR RefSeq; XP_010691310.1; XM_010693008.2. DR RefSeq; XP_019107628.1; XM_019252083.1. DR EnsemblPlants; KMT00794; KMT00794; BVRB_9g220730. DR GeneID; 104904668; -. DR Gramene; KMT00794; KMT00794; BVRB_9g220730. DR KEGG; bvg:104904668; -. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 329 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 329 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 39781 MW; 19D7E733163D33FF CRC64; MANVCESCKT LERYEYWNEI PSEKQKFFKV MLGNFEHQLR IPRKFIKCFK GDLSSSCTLR GQSGHVWRVE IVETEEDVLF SDGWGNFVRD NGLMMGYFLV FCYAGDSSFE VSIFDTTGCE VEGSHFATNM NLSSRTCRSL LHYENGQSKG KSKVDEMTES KDRKERASTQ EGFTSPMLYK KRGSSQGAQS KKFYISQRRK VTEKEKQCAS NRAIKYKKHK SLRDNMIEII MLPTHVYHGF HLTVPKEWAV EHMLPESHEG ILRVPRVEKS WKVGCRWTPS QCQIIRGWST FVLDNNLEER DVCVFELVQK GDSCIKRNPI FHVHIFRVVR EVVPLTVSRR LV // ID A0A0J8BMW9_BETVU Unreviewed; 934 AA. AC A0A0J8BMW9; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_9g203750 {ECO:0000313|EMBL:KMT02700.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT02700.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT02700.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT02700.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090172; KMT02700.1; -; Genomic_DNA. DR RefSeq; XP_010688801.1; XM_010690499.2. DR EnsemblPlants; KMT02700; KMT02700; BVRB_9g203750. DR GeneID; 104902645; -. DR Gramene; KMT02700; KMT02700; BVRB_9g203750. DR KEGG; bvg:104902645; -. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 799 884 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 532 559 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 934 AA; 104828 MW; 1D53262322F11CF6 CRC64; MRLSSSGFPH QPEEGEKKVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQCLQVAAST NKEVDAHIPN YPSLPAQLIC QLHDVTMHAD VETDEVYSQM TLQPLTLQEQ KDVCLLPAEL GTASKQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LIARDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN EKNQLLLGIR RANRPQTVMP SSVLSSDSMH IGLLAAAAHA ASTNSRFTVF FNPRASPSEF VVPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGISDLDPVR WPSSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPSGLPSFPV LKDGDMGLNS PLMWLQREVG DRCMPSLNFQ GYGLTPWMQP RLDSAMLGLQ PDIFQTMASS ALHDPRGLEK RPNQSLLQFQ PNQNVSCQPS SLIQNQLLQQ AQSQQTLVQS FQENQTVAQN QVHSQLLQQQ LQNCRSYNDH HHHQQQQQQQ QQQQQHQQQQ QQQHQQQQQQ QQQQHHQHQQ LPHFEQLRNQ FSDQQQIAKV ISKTPPFGPS TQSLPTSLET ISSPCPQQLF SNSIMNSVTA ADISPMHSLL NSFSLDGGSR QVTLTDSNPL VSSTPLLSKR VAVEPQLSST APCSLPQVED LAGPQSRISE LSSLLPPLPG RDFSIYHGIG DPQNNLLFGV NVQQNELANL RSHNNENDSL SMQFACSSFP SAAGTDFPPA SDIMATSCVD ESGFLQSSEN DDHVNPPSGT FVKVQKSGSL GRSLDISKFS SYQELRSELA HMFGLEGQLE DPLRSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS PQEVQQMGKE GLNFPNSIPR PKHQNSFNSC DDYTLQQDLR HNSNGMASVT SLDY // ID A0A0J8BNT3_BETVU Unreviewed; 508 AA. AC A0A0J8BNT3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT02942.1}; GN ORFNames=BVRB_8g195160 {ECO:0000313|EMBL:KMT02942.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT02942.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT02942.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT02942.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090171; KMT02942.1; -; Genomic_DNA. DR RefSeq; XP_010688083.1; XM_010689781.2. DR EnsemblPlants; KMT02942; KMT02942; BVRB_8g195160. DR GeneID; 104902101; -. DR Gramene; KMT02942; KMT02942; BVRB_8g195160. DR Proteomes; UP000035740; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 173 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 508 AA; 56971 MW; 5D3472F4BCD1A11B CRC64; MGKCKSAISK KELKLSLVAK RLSMLQDDDH ENQNQLVVSL CPEIPVECES TKPSKDTSDD TLSEDIIISK SSQNRTKYGS HKRGRVISDD ESSEDDRELI VCIQPTNKER SKPKRIKSIA SCNNENRKAT NNPGAQKRQS LDLSDPISTG RKSSPMKRAE EIQANMSTEY PSFVKLMMKS HVSGGFWLGL PKKFCDDHLP MCDCKVVLVD EPGKESSTVY LAGKVGLSGG WRGFSIEHKL LEGDVLVFHL IAPAKFKIYI VREHDFGEVD GALSLLTLDP GLGQQKLEEN TQKVLQIEDN YPMVDYLSQS SSDVDLGSEV LDGLRFSDSD IDFERVESFE NFNIIVDGLI IDSKFSDTTR KKYYELCCCE RSFLHETFLK GLNCNLVVGI ISETINIADA IKSWKNGSTS HEDLQIWEKT LKGFELLGMK VGFLLARINQ LLGRSSELKA DESDRLKESI IKRTLAGERM KAIEDKFTQL KDIMEKINFE MDAEIKMASA RKLGIAAV // ID A0A0J8BRS7_BETVU Unreviewed; 931 AA. AC A0A0J8BRS7; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_9g203750 {ECO:0000313|EMBL:KMT02699.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT02699.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT02699.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT02699.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090172; KMT02699.1; -; Genomic_DNA. DR RefSeq; XP_010688802.1; XM_010690500.2. DR EnsemblPlants; KMT02699; KMT02699; BVRB_9g203750. DR GeneID; 104902645; -. DR Gramene; KMT02699; KMT02699; BVRB_9g203750. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 796 881 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 529 556 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 931 AA; 104483 MW; 0A6C5BE55AAC7862 CRC64; MRLSSSGFPH QPEEGEKKVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPAQLICQLH DVTMHADVET DEVYSQMTLQ PLTLQEQKDV CLLPAELGTA SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAST NSRFTVFFNP RASPSEFVVP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPS SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPS GLPSFPVLKD GDMGLNSPLM WLQREVGDRC MPSLNFQGYG LTPWMQPRLD SAMLGLQPDI FQTMASSALH DPRGLEKRPN QSLLQFQPNQ NVSCQPSSLI QNQLLQQAQS QQTLVQSFQE NQTVAQNQVH SQLLQQQLQN CRSYNDHHHH QQQQQQQQQQ QQHQQQQQQQ HQQQQQQQQQ QHHQHQQLPH FEQLRNQFSD QQQIAKVISK TPPFGPSTQS LPTSLETISS PCPQQLFSNS IMNSVTAADI SPMHSLLNSF SLDGGSRQVT LTDSNPLVSS TPLLSKRVAV EPQLSSTAPC SLPQVEDLAG PQSRISELSS LLPPLPGRDF SIYHGIGDPQ NNLLFGVNVQ QNELANLRSH NNENDSLSMQ FACSSFPSAA GTDFPPASDI MATSCVDESG FLQSSENDDH VNPPSGTFVK VQKSGSLGRS LDISKFSSYQ ELRSELAHMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWQEFVNNV WYIKILSPQE VQQMGKEGLN FPNSIPRPKH QNSFNSCDDY TLQQDLRHNS NGMASVTSLD Y // ID A0A0J8BSF5_BETVU Unreviewed; 509 AA. AC A0A0J8BSF5; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT02944.1}; GN ORFNames=BVRB_8g195160 {ECO:0000313|EMBL:KMT02944.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT02944.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT02944.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT02944.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090171; KMT02944.1; -; Genomic_DNA. DR RefSeq; XP_010688081.1; XM_010689779.2. DR EnsemblPlants; KMT02944; KMT02944; BVRB_8g195160. DR GeneID; 104902101; -. DR Gramene; KMT02944; KMT02944; BVRB_8g195160. DR KEGG; bvg:104902101; -. DR Proteomes; UP000035740; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 174 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 509 AA; 57099 MW; 5D3472F120D80C1B CRC64; MQGKCKSAIS KKELKLSLVA KRLSMLQDDD HENQNQLVVS LCPEIPVECE STKPSKDTSD DTLSEDIIIS KSSQNRTKYG SHKRGRVISD DESSEDDREL IVCIQPTNKE RSKPKRIKSI ASCNNENRKA TNNPGAQKRQ SLDLSDPIST GRKSSPMKRA EEIQANMSTE YPSFVKLMMK SHVSGGFWLG LPKKFCDDHL PMCDCKVVLV DEPGKESSTV YLAGKVGLSG GWRGFSIEHK LLEGDVLVFH LIAPAKFKIY IVREHDFGEV DGALSLLTLD PGLGQQKLEE NTQKVLQIED NYPMVDYLSQ SSSDVDLGSE VLDGLRFSDS DIDFERVESF ENFNIIVDGL IIDSKFSDTT RKKYYELCCC ERSFLHETFL KGLNCNLVVG IISETINIAD AIKSWKNGST SHEDLQIWEK TLKGFELLGM KVGFLLARIN QLLGRSSELK ADESDRLKES IIKRTLAGER MKAIEDKFTQ LKDIMEKINF EMDAEIKMAS ARKLGIAAV // ID A0A0J8BSR9_BETVU Unreviewed; 507 AA. AC A0A0J8BSR9; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT02943.1}; GN ORFNames=BVRB_8g195160 {ECO:0000313|EMBL:KMT02943.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT02943.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT02943.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT02943.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090171; KMT02943.1; -; Genomic_DNA. DR EnsemblPlants; KMT02943; KMT02943; BVRB_8g195160. DR Gramene; KMT02943; KMT02943; BVRB_8g195160. DR Proteomes; UP000035740; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 172 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 507 AA; 56815 MW; 0B170257F7EFAE71 CRC64; MGKCKSAISK KELKLSLVAK RLSMLQDDDH ENQNQLVVSL CPEIPVECES TKPSKDTSDD TLSEDIIISK SSQNRTKYGS HKRGRVISDD ESSEDDRELI VCIQPTNKES KPKRIKSIAS CNNENRKATN NPGAQKRQSL DLSDPISTGR KSSPMKRAEE IQANMSTEYP SFVKLMMKSH VSGGFWLGLP KKFCDDHLPM CDCKVVLVDE PGKESSTVYL AGKVGLSGGW RGFSIEHKLL EGDVLVFHLI APAKFKIYIV REHDFGEVDG ALSLLTLDPG LGQQKLEENT QKVLQIEDNY PMVDYLSQSS SDVDLGSEVL DGLRFSDSDI DFERVESFEN FNIIVDGLII DSKFSDTTRK KYYELCCCER SFLHETFLKG LNCNLVVGII SETINIADAI KSWKNGSTSH EDLQIWEKTL KGFELLGMKV GFLLARINQL LGRSSELKAD ESDRLKESII KRTLAGERMK AIEDKFTQLK DIMEKINFEM DAEIKMASAR KLGIAAV // ID A0A0J8BST3_BETVU Unreviewed; 690 AA. AC A0A0J8BST3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_8g182410 {ECO:0000313|EMBL:KMT04585.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT04585.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT04585.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT04585.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090155; KMT04585.1; -; Genomic_DNA. DR RefSeq; XP_010686391.1; XM_010688089.2. DR EnsemblPlants; KMT04585; KMT04585; BVRB_8g182410. DR GeneID; 104900616; -. DR Gramene; KMT04585; KMT04585; BVRB_8g182410. DR Proteomes; UP000035740; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 171 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 171 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 690 AA; 76782 MW; CAEC5176077BE624 CRC64; MMGVLIDLNT VNEDEEDNYQ NTQNFQDQNF NLSPQNPSSS VCMELWHACA GPLISLPKKG SLVVYLPQGH LEEQQHNNMP EFDFSCGVNS SNNIHNHNTF DSHHNNIPPH VFCRVLDVKL HAEVATDEVY AQVSLIPESQ IEEKMRESET DVEGDEEDFE DVVKSTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG ADGELRLGIR RAVQLKGPAA FPALASRPVN NGVTAAFDAI SSRRVFNVCY NPRASSSEFV VPLRRFLRSM DNSFNVGMRF KMRFEAEDAG ERRYTGVVTG MAELDPIRWP GSKWRCLMVR WDDVEVNRHG RVSPWEIEPT GSFPSPSSMM ASGLKRSRIG LPLTKPDFPV PSGVGMPDFG DSLGFRKVLQ GQEKLGSRSA CDGNDNNPHL SPSEPGRCFP SSIPSGGDFG RTAKGIGFRE SFRFQRVLQG QEIHHLSPAH IDGFTSSANR RHDGGGPLEI FEGVQVPNCG NRWLKAQVSS PSSVLMFPHT SIQQARCFRS PVGQPRLMNM EHMNYSTVPA AYSSLSKGSD ELAPAGKASC RLFGFSLTEG EHRVDKERKH SSFPPPETSF WPLVEGQPCY KSSSATKVVS SCPGVNDLYA VRDMLLDIAL // ID A0A0J8BYC3_BETVU Unreviewed; 695 AA. AC A0A0J8BYC3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_7g161770 {ECO:0000313|EMBL:KMT06252.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT06252.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT06252.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT06252.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090139; KMT06252.1; -; Genomic_DNA. DR RefSeq; XP_010684071.1; XM_010685769.2. DR EnsemblPlants; KMT06252; KMT06252; BVRB_7g161770. DR GeneID; 104898663; -. DR Gramene; KMT06252; KMT06252; BVRB_7g161770. DR KEGG; bvg:104898663; -. DR Proteomes; UP000035740; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 692 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 76649 MW; 69F5FC4E25B04677 CRC64; MITFMDPKEK IKEGDNCLDS QLWHACAGGM VQMPPVNTKV FYFLQGHIEH ANGNVDFRSF PRIPAYVQCR VEDIRYLADQ ETDEVYAKIR LIPVANELDY SDEDIGVHGT EVQENKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST VLNYGAFSAF LREDENRITR NGNGVGLNSG GNPSAKGKVK IESLIEAATH AAKGQPFEVV YYPRAGTPEF VVKAGHVRAA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVSDPVH WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK FRLPHHPDFP MDGQLPVPTF PGNFLGPNSP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG FPALDPTTTL PNRPSSSLSY QKPGNNENIS CLLTMGNSNQ STKKSDVTKP HHFVLFGKPI LTEQQMSLSR SGETVSPVPT GNSSSEGNVD KGGNVSDGSG SALNQDRSSS ERHPWLKDNR PEMDLELETG HCKVFMESED VGRTLELTLL NSYEELCSRL ANMFGIESSD MLNRVVYRDS AGSSKQIGDE PFSEFAKRAK RLTILMDSSS DNIGA // ID A0A0J8BZS4_BETVU Unreviewed; 909 AA. AC A0A0J8BZS4; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT05453.1}; GN ORFNames=BVRB_7g175800 {ECO:0000313|EMBL:KMT05453.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT05453.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT05453.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT05453.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090154; KMT05453.1; -; Genomic_DNA. DR RefSeq; XP_010685978.1; XM_010687676.2. DR EnsemblPlants; KMT05453; KMT05453; BVRB_7g175800. DR GeneID; 104900288; -. DR Gramene; KMT05453; KMT05453; BVRB_7g175800. DR KEGG; bvg:104900288; -. DR Proteomes; UP000035740; Chromosome 7. DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 330 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 593 643 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 330 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 909 AA; 99734 MW; 53F50C8B1E48D2A7 CRC64; MGSRTCMNTS CGAKATVQWK KGWELKSGEI ADLCFKCGSA YENLVYCDTF HAEETGWREC SLCNKRLHCG CSASVTVIEI QDFGGVWCIS CATSAGCHPT KRDGSFSDAQ TSGKYSIAGD VQKSQLNSKL ETNAIGNVNL LSMGNVIETN VPRYLPQSPH DLMNGSFGPI KPDAKSSSIG VGGLGFANIS HSVSGPALHA QPNEDKPNTG VKDVQEPQMP SLNISLRSPS ETPNFGLSFS GGVEEGENSR STGLFQSGQR PRQILPKPPK NNLAKVSDTN KGSFSPMRVA RPPAEGRLRN QLLPRYWPRI TDQELQKLSG DLKTTIVPLF EKILSASDAS RIGRLVLPKA CAEAYFPTIN QSEGLPLKIQ DIKGNEWTFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPG GKLVIGYRKA SNALESQDPQ TSSANPNGAA SGDSCYPDAT DSVSARNGHC GLQSMAGAKD SELSALPEQS NLVNGSTVWG KSEKLKGKGR EDVVEQPKLP SDKKRMRNIK SKRLLMHNDD AMELRLTWEE TQDLLRPPPN VKPNIIMVED FEFEEYSEPP VVGKRTFFTT QLSGGQEQWA QCDNCLKWRK LPADVLLPSK WTCSENIWDS SRSSCSSQEE TSPKELDNVF KGSKDSKKRK VAESPEQGCE PSGLDALATA ATLGDHEEPS AGATTRHPRH RPGCTCIVCI QPPSGKGKHK PSCVCNVCLT VKRRFKTLMM RKKKRQCERE AEMAQQKSNT EHQIKGSHQV IKKTSPNDIM SDKKDYVENE KVQEKSQPEE GESSSKGHID LNAHPIREDD SNVDAQPSMG IMALAQAASA PLDNMYMKPN GLSNLLSKQP MDTDTCLLQK ACDYVDRCLL PKDEHHSSVV NDQEQSKADG EASKKPTLD // ID A0A0J8C046_BETVU Unreviewed; 299 AA. AC A0A0J8C046; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT06867.1}; GN ORFNames=BVRB_6g152070 {ECO:0000313|EMBL:KMT06867.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT06867.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT06867.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT06867.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090136; KMT06867.1; -; Genomic_DNA. DR EnsemblPlants; KMT06867; KMT06867; BVRB_6g152070. DR Gramene; KMT06867; KMT06867; BVRB_6g152070. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010373; P:negative regulation of gibberellin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0010116; P:positive regulation of abscisic acid biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0008284; P:positive regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0010262; P:somatic embryogenesis; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 34222 MW; 6E6FD4FDAD0A72EF CRC64; MMMMVEEREN EKNDVLGFAQ NNGVVVFNSG NSASGNGGLG NSGESTRAIL GCFGEHKIQR KKRMARQRRS SVSLLPFASS HVPTLSLPAR VIDPRRLRFL FQKQLQNSDV SSLRRMVLPK KAAESHLPTL ETKEGIYISM DDMDGVHLWN FKYRFWPNNN SRMYVLENTG DFVSAHRLQL GDFIMVYQDI INLNYVIQAK KTSQQEIYND YTTNAVSDHY YQVHNFEINR YNQLSWNDPG KMEDDNKTCM SFVYETTSFS NDSPFDFLGG SMTNYYSGMG GHGFENFGSV DNLSLDDFY // ID A0A0J8C368_BETVU Unreviewed; 380 AA. AC A0A0J8C368; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT06704.1}; GN ORFNames=BVRB_7g158660 {ECO:0000313|EMBL:KMT06704.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT06704.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT06704.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT06704.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090137; KMT06704.1; -; Genomic_DNA. DR RefSeq; XP_010683640.1; XM_010685338.2. DR EnsemblPlants; KMT06704; KMT06704; BVRB_7g158660. DR GeneID; 104898284; -. DR Gramene; KMT06704; KMT06704; BVRB_7g158660. DR KEGG; bvg:104898284; -. DR Proteomes; UP000035740; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 380 AA; 42570 MW; 74DA2E7757B49BD8 CRC64; MSHFSLNLPS SDTLWYTPTS MDQQQQQQQQ QQSYHTHQKS LPFFYHSSLS LSSSHDVESD NSSSNNNNNN NNTTTITTNV VDRSETTSST SSFDREYMFE KPLTPSDVGK LNRLVIPKQH AEKYFPLANS NTTSDASATV VGGDKSGGGG GGGGVLLGFE DESGKCWKFR YSYWNSSQSY VLTKGWSRYV KEKKLDAGDV VLFDRHRFES DRFFIGWRRR GSPPVHNPGP APPVQFNHNN NNHHQNYGVV QSQGFNGGPH HHQIASFPSY RPDCLHAGTE VRQKGRKSGG GNSKRVRLFG VNLECQIEEE EEDIEEPQTS DGSSLSSQGQ GQVGSGSGFG INPVAYNYFD YVGYPPNNNY NNHMDMNFPQ DVNQMRNRLR // ID A0A0J8C4F1_BETVU Unreviewed; 395 AA. AC A0A0J8C4F1; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT08665.1}; GN ORFNames=BVRB_6g139410 {ECO:0000313|EMBL:KMT08665.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT08665.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT08665.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT08665.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090113; KMT08665.1; -; Genomic_DNA. DR RefSeq; XP_010681098.1; XM_010682796.1. DR EnsemblPlants; KMT08665; KMT08665; BVRB_6g139410. DR GeneID; 104896096; -. DR Gramene; KMT08665; KMT08665; BVRB_6g139410. DR KEGG; bvg:104896096; -. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 395 AA; 45274 MW; 853A359C65413EFF CRC64; MEEQKKNSGT CRSWEEETYW KHFHFVHFFQ ILPTYFHHHL TLPTKFTANE IAKLPEVVIL KGPNEIIWHV NLLKTDSNHV MITGDGWKEF VKAYSLQKKD LIIFKYDRAS KCFEVLIFDP ASSCEREASY FVRQHKQTQT GGFDGQAKST SYEYVICSSD STANTDEDRE SGKDKSKQQK AEKVNVRTQK GVSTSVGAST IIREVPSNYA TKRKAINAHG NPSIKARICS AARGRNRNKE VPLKKQSETR KSYKGPCYIS NRRPVTESEK SKAFAMACKS ATNESFIVIM RPSHVYKRFS LVIPRRWKVE NFSRNTFQEV ILRIQDKTWV VSFCATNNHG HGGFEGGWKK FALDNFLEEF DVCLFVPGGQ ENKSFVLDVN IFRVVNELTP LSPVN // ID A0A0J8C793_BETVU Unreviewed; 659 AA. AC A0A0J8C793; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_6g145940 {ECO:0000313|EMBL:KMT07898.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT07898.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT07898.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT07898.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090131; KMT07898.1; -; Genomic_DNA. DR RefSeq; XP_010682136.1; XM_010683834.2. DR EnsemblPlants; KMT07898; KMT07898; BVRB_6g145940. DR GeneID; 104897022; -. DR Gramene; KMT07898; KMT07898; BVRB_6g145940. DR KEGG; bvg:104897022; -. DR KO; K14486; -. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 535 628 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 659 AA; 73157 MW; 5014CB751FEEB153 CRC64; MALQGTHRSG GRPEQDALYK ELWFACAGPL VNVPREGERV YYFPQGHMEQ LEASTHQGLD QQMPSFNLPS KILCKVANIE LRAEPETDEV YAQITLVPER DQSEVTKPDA PVPDPPRCNV HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHS NEWHFRHIFR GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRLMRQLNN MPSSVISSHS MHLGVLATAA HAIQTGTLFS VFYKPRTSRS EFLVSVNKYL EAKSHKLSVG MRFKMRFEGD EVPERRFSGT IVGVNDTSSS SWENSEWRSL KVQWDEPSSI VRPERVSPWE LEPLVATNAS NTQPTTQRNK RPRPAVMPSS ATDLSALGIW KSPGESPVAA SAEVERTRDQ FSSVTKAGSA GFTANSSLPA ISSQSIYWSN RADNASESLG SVVNKESGEK RKSSGAGCRL FGIQLFDHSN LDESSTGVDE DLPVPSLEAE SDRSNVNRSD VPSLSCDPDK SSQRSPSESQ SKQSRTCTKV HMQDVAVGRA VDLTRFECYE DLLKKLELLF DIKGELCCSS GKWQVVYTDD EDDMMMVGDD PWHEFCSMVK KIFIYTSEEV KRLSPKSKIS VEEDAKPGYV DADLPAASEE QSSAVGPSC // ID A0A0J8C877_BETVU Unreviewed; 399 AA. AC A0A0J8C877; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT08208.1}; GN ORFNames=BVRB_6g142620 {ECO:0000313|EMBL:KMT08208.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT08208.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT08208.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT08208.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090121; KMT08208.1; -; Genomic_DNA. DR RefSeq; XP_010681667.1; XM_010683365.2. DR EnsemblPlants; KMT08208; KMT08208; BVRB_6g142620. DR GeneID; 104896598; -. DR Gramene; KMT08208; KMT08208; BVRB_6g142620. DR KEGG; bvg:104896598; -. DR KO; K09287; -. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 131 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 213 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 131 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 213 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 44193 MW; 71B9EA0336AB0FD5 CRC64; MEASSMDESS STSDSQVSTT LPPMIVRNMM MVPSAPLPTK ASATAGSLCR MGSGTSVIID SENGIEAESR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAQR FRGRDAVTNF KPLSSEDELG AAELRFLNSR SKAEVVDMLR KHTYLDELQQ SRRNFKGDVC NNFGEKGLLH SSSDKSKLSG NNNEGGFGRE QLFEKVVTPS DVGKLNRLVI PKQHAEKHFP LQGSNSTTTT TTTTSNTTNT LVGSGSKGVL LNFEDVNQKV WRFRYSYWNS SQSYVLTKGW SRFVKEKSLK AGDIVSFQRS TGPDRQLYID YKQRSISVEC TPVDVRAAGQ MIRLFGVDIC KLPISVAEVT VNVNGKRLRE MELLAMESSS KKQMVVAAL // ID A0A0J8C8K5_BETVU Unreviewed; 295 AA. AC A0A0J8C8K5; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT08569.1}; GN ORFNames=BVRB_6g138490 {ECO:0000313|EMBL:KMT08569.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT08569.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT08569.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT08569.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090113; KMT08569.1; -; Genomic_DNA. DR RefSeq; XP_010680987.1; XM_010682685.2. DR EnsemblPlants; KMT08569; KMT08569; BVRB_6g138490. DR GeneID; 104896015; -. DR Gramene; KMT08569; KMT08569; BVRB_6g138490. DR KEGG; bvg:104896015; -. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 186 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 186 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 34048 MW; 09B825705B6EE3D5 CRC64; MTNDDIISGF PSFFKLILAP RLDLHKLEIP TVFMKNYGID LTDIVYLNIP TGKIWKVKLV KEKNTRVWLQ NGWPKFVEFY SISHGYALMF RYTGSLRFNV HIFDMSASEI DYPLRTKTCK RVHKRKIREN NNNEDANMNA PTSSSHKAKG MVGPKRCKFW GNTRGATPEE IKNVESYAYQ CGYPSFAVKM RPSYVQYSFV LNVPSAFFKE YTCTEAVNFI LKNVTGKTWP VKANRKHEHV KIYKGWKLFA IDNNLRVGDI CVFELMKKGA QNSFKVGIIR SCDVAKEEAH IKAEV // ID A0A0J8C9B0_BETVU Unreviewed; 151 AA. AC A0A0J8C9B0; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT08568.1}; GN ORFNames=BVRB_6g138480 {ECO:0000313|EMBL:KMT08568.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT08568.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT08568.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT08568.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090113; KMT08568.1; -; Genomic_DNA. DR EnsemblPlants; KMT08568; KMT08568; BVRB_6g138480. DR Gramene; KMT08568; KMT08568; BVRB_6g138480. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 151 AA; 17369 MW; 2DAB2FA8C87EE136 CRC64; MDDKLIISYN RRWPPGLTPE ETKRVRAYYA HNCKHPSFAT KLTPSSVEYT FNTGVPKEFV KTYLDKEPRT CKFHLQTSTG KTWPVVMTAG GDGRVKLTEG WKIFTLANKL QVGDISIFEL INKLKFNVHI LRLANAKENR ENIAINIEEI E // ID A0A0J8CD27_BETVU Unreviewed; 321 AA. AC A0A0J8CD27; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT09863.1}; GN ORFNames=BVRB_6g128370 {ECO:0000313|EMBL:KMT09863.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT09863.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT09863.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT09863.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090109; KMT09863.1; -; Genomic_DNA. DR RefSeq; XP_010679708.1; XM_010681406.1. DR EnsemblPlants; KMT09863; KMT09863; BVRB_6g128370. DR GeneID; 104895011; -. DR Gramene; KMT09863; KMT09863; BVRB_6g128370. DR KEGG; bvg:104895011; -. DR KO; K09287; -. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 93 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 157 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 93 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 157 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 37297 MW; B2BE523D841DFAF5 CRC64; MYHNPSSPTI SSTSTEDSTP TKKQPQPQPQ PQPQPRYKYK GIVPQPNGRW GAQLYQDNKR IWIGTFDCQH VAAHAYDIAA IRFRGTQALT NYPLRHYDKP QLHFLASHSK VRIIDILRNQ TYEEELTRFM RSRTKAIRAR RMAPDFEQNL VARERLFEKV LTPSDVGRLH RLVIPKHYAR CYLPVIVDIR GIMLSFEDER REKIWRFKCC YWKSSQNYVL TKGWGEFVRD KGLRPGDSVV FYTTLVGSDL RFSIDTMFKQ HDVEEISDSG NGSNGDHEVE LVFRSKFLRL FGVDICPFIP TSISSSWCDG KGQRITSSVF L // ID A0A0J8CH85_BETVU Unreviewed; 370 AA. AC A0A0J8CH85; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT11464.1}; GN ORFNames=BVRB_5g107890 {ECO:0000313|EMBL:KMT11464.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT11464.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT11464.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT11464.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090092; KMT11464.1; -; Genomic_DNA. DR RefSeq; XP_010677479.1; XM_010679177.2. DR EnsemblPlants; KMT11464; KMT11464; BVRB_5g107890. DR GeneID; 104893102; -. DR Gramene; KMT11464; KMT11464; BVRB_5g107890. DR Proteomes; UP000035740; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 262 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 262 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 370 AA; 42868 MW; 328108B4460E9FC8 CRC64; MLRRGSSTNA RTREEILYWR NLNPFFKVDL HADFRSGLEI PLYFSENVKG KLHHNVVLKG PSADIDTWDV QLKTNDDTTR FVGEGWQDFV TAFSLEENDS LVFKYKNNSY FKVRIFDGKT SCEKESSHFV IKSVSNRTKE SCSPVQNTQS FKQEIESEGE KIRHNDYYSS IVGGLKEIES DDSDDQPLVF RRREIPKIGG LKEMESNDSD DPPLLFSRRV IPKIEPEGGY MYPLRSREHT AKEIERVRQQ AKEIQRLTKN SFFVALSRSH VSGTMKLGIP KQWWSDFVKA KSSKHLVLRL KDELDYDPQL YFCCYDGSNS SGTITTGWKN FVQKNSLYEF DCCVFSIDKP LEENCVFIPL EVQIIRAMLP // ID A0A0J8CI72_BETVU Unreviewed; 584 AA. AC A0A0J8CI72; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT13395.1}; GN ORFNames=BVRB_4g084290 {ECO:0000313|EMBL:KMT13395.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT13395.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT13395.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT13395.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090075; KMT13395.1; -; Genomic_DNA. DR RefSeq; XP_010675172.1; XM_010676870.1. DR EnsemblPlants; KMT13395; KMT13395; BVRB_4g084290. DR GeneID; 104891209; -. DR Gramene; KMT13395; KMT13395; BVRB_4g084290. DR Proteomes; UP000035740; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 476 573 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 476 573 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 584 AA; 66687 MW; 242089A0800F60AC CRC64; MEENSECKNC STWEEEMYWK HFNSMHFCQT LQQDFHDHLV LPEKFAANMK TQLPDKVPLK GPGGASWEIE LLKCDDLLFV GNEWKDFVKA NDLKENCLLV FKYKRNLGFE VIIIDEGSSC EKESAYFVKK CRHTKSDLEV VKKRSSREAS STEVIEDDGD EDSPFVVSKK SRKEDGLVAC SGEKVNFQTP RKRVVNAAAR RRGRPRRVQP CKSTIKPNVR SSEKNSISDE AAKDLSHASH INVITPDNGE SFPEKDHSHK LESQSKKNLN GDDAAREPNL ISTIELITPE NGENSQAADR SQTLKAQSEN QPSGDVSVIQ PSQIFERNLI ENGELFQVID HSPIMKAQSE KLPSRDDTSN KLKWISDKEL NTPENEKELM ERGTAKKLKQ ISGREMIRPD YKESSAEEDR ACKTRVKRGR GKKQNLPKSS KKLVFKSVSD GKRFSREYIS NRRAVTEMEK EDALQRANTK LTPNSFIAVM RPTGVYKRFF LSVPANWLHK YLPRRNQEIV LRVKDQTWVT SLFYYGSRGG GLSTGWKKFA LENFLEEFDV LVFKLVSKKD EVAVLDVDIF RVVSNIVPPL PMIS // ID A0A0J8CJ31_BETVU Unreviewed; 353 AA. AC A0A0J8CJ31; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT12083.1}; GN ORFNames=BVRB_5g100380 {ECO:0000313|EMBL:KMT12083.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT12083.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT12083.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT12083.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090086; KMT12083.1; -; Genomic_DNA. DR RefSeq; XP_010676971.1; XM_010678669.1. DR EnsemblPlants; KMT12083; KMT12083; BVRB_5g100380. DR GeneID; 104892679; -. DR Gramene; KMT12083; KMT12083; BVRB_5g100380. DR KEGG; bvg:104892679; -. DR KO; K09287; -. DR Proteomes; UP000035740; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 108 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 175 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 108 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 175 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 40978 MW; E06E623CF0AE3735 CRC64; MMEEEIVLST MTKTDASESY SSNSTTQRPN TDNRPNTTNR PKKQNGSCSR FKGVVYQQNG HWGAQIYANH HRIWLGTFKT EAAAAAAYDS AAIKLRHGNS GEAHRNFPWT GITMYEPNFQ AHYATDQVLN MIKDGSYQTK FGEYLSSVCQ VRNAQTSNHN NNQNKQEGYY CQELFRKELT PSDVGKLNRL VIPKRYALKY FPINDRVSRN FSLSEFQEGE DQGGDMELIF YDKKMRSWKF RYCYWKSSQS FVFTRGWNKF VRVKELEAKD IITFYMCELK ENNVEDVKKF WMIDVVKCST NSSHKLDKEV VHGTEIQEEK VYMVEGEATN TKKDAGFRLF GVQIKPIHCD QKS // ID A0A0J8CMX5_BETVU Unreviewed; 526 AA. AC A0A0J8CMX5; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT13393.1}; GN ORFNames=BVRB_4g084280 {ECO:0000313|EMBL:KMT13393.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT13393.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT13393.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT13393.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090075; KMT13393.1; -; Genomic_DNA. DR RefSeq; XP_010675170.1; XM_010676868.2. DR EnsemblPlants; KMT13393; KMT13393; BVRB_4g084280. DR GeneID; 104891208; -. DR Gramene; KMT13393; KMT13393; BVRB_4g084280. DR KEGG; bvg:104891208; -. DR Proteomes; UP000035740; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 412 511 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 412 511 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 526 AA; 60698 MW; 85AB97A148FFD59B CRC64; MEQKSGCEHC KTWEEEMYWK HFNAMHFCQI LPRNFHDHLV LPEKFAAHVT TQLSDKVSVT GPSGTIWEID LQKNDNLLFV GDGWKEFVKA YDLQANYLLM FKYKRNSSFE VLIFDQESFC EKEAAYFVKK CRHNKSEYEN HKKRSIEREG SSIEAIEDDT SDDDSALVVS KKSKKDVEEE VGCLGHEKGT HSPVSHTSNA AVKRRGRPRK KVVPCNSLSE PKAQSKHKSD RNEATQELSQ TSLSDMNIPE NGENSHEKDH SDKLRDQSEK NQSGNDVPQE PNLISGKDRS TPDNFSEMKR SHRLSALYGK EPSENGNAKI PSQISSRDLM TYDTIDSSPE ADYSQKPRRK RGRPRNVSVP LVPVSSTKRV SRSVPAGTKY TEEYMSNRRE VTQMEKQNAL QRAKQQQTEN SFIVVMRPTC VYRRFYLSIP AEWMNAHLNL HHQEIVLRID DKTWLTMFYY YEKRGVGGIC PGWKKFVLEN SLEEFDVLLF KLDNQKDNAK IVFDVEIFRV IPKILPPLLL TSSSMK // ID A0A0J8CMZ3_BETVU Unreviewed; 587 AA. AC A0A0J8CMZ3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT13394.1}; GN ORFNames=BVRB_4g084290 {ECO:0000313|EMBL:KMT13394.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT13394.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT13394.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT13394.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090075; KMT13394.1; -; Genomic_DNA. DR RefSeq; XP_010675171.1; XM_010676869.1. DR EnsemblPlants; KMT13394; KMT13394; BVRB_4g084290. DR GeneID; 104891209; -. DR Gramene; KMT13394; KMT13394; BVRB_4g084290. DR KEGG; bvg:104891209; -. DR Proteomes; UP000035740; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 479 576 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 479 576 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 587 AA; 67014 MW; D108B93D621FECDB CRC64; MEENSECKNC STWEEEMYWK HFNSMHFCQT LQQDFHDHLV LPEKFAANMK TQLPDKVPLK GPGGASWEIE LLKCDDLLFV GNEWKDFVKA NDLKENCLLV FKYKRNLGFE VIIIDEGSSC EKESAYFVKK CRHTKSDLEV VKKRSSREAS STEVIEDDGD EDSPFVVSKK SRKEDGLVAC SGEKVNFQTP RKRVVNAAAR RRGRPRRVQP CKSTIKPNVR SSEKNSISDE AAKDLSHASH INVITPDNGE SFPEKDHSHK LESQSKKNLN GDDAAREPNL ISTIELITPE NGENSQAADR SQTLKAQSEN QPSGDVSVIQ PSQIFERNLI ENGELFQVID HSPIMKAQSE KLPSRDDTSN KLKWISDKEL NTPENDLVEK ELMERGTAKK LKQISGREMI RPDYKESSAE EDRACKTRVK RGRGKKQNLP KSSKKLVFKS VSDGKRFSRE YISNRRAVTE MEKEDALQRA NTKLTPNSFI AVMRPTGVYK RFFLSVPANW LHKYLPRRNQ EIVLRVKDQT WVTSLFYYGS RGGGLSTGWK KFALENFLEE FDVLVFKLVS KKDEVAVLDV DIFRVVSNIV PPLPMIS // ID A0A0J8CPT1_BETVU Unreviewed; 110 AA. AC A0A0J8CPT1; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT15785.1}; GN ORFNames=BVRB_3g057610 {ECO:0000313|EMBL:KMT15785.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT15785.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT15785.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT15785.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090059; KMT15785.1; -; Genomic_DNA. DR RefSeq; XP_010672241.1; XM_010673939.2. DR EnsemblPlants; KMT15785; KMT15785; BVRB_3g057610. DR GeneID; 104888839; -. DR Gramene; KMT15785; KMT15785; BVRB_3g057610. DR KEGG; bvg:104888839; -. DR Proteomes; UP000035740; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12735 MW; 154B73DA263F72F4 CRC64; MEKVTFNFRG HPFCQTTVKS YCLKWGGIIL PMNFAKENDL ANKWCDITLI DQSGKAWQLQ LRYTNRKWAS VYIGGWSKFH LENGLKEGDH VVFELIAVGE NPTMNFYKLG // ID A0A0J8CQD1_BETVU Unreviewed; 256 AA. AC A0A0J8CQD1; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT15782.1}; GN ORFNames=BVRB_3g057580 {ECO:0000313|EMBL:KMT15782.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT15782.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT15782.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT15782.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090059; KMT15782.1; -; Genomic_DNA. DR EnsemblPlants; KMT15782; KMT15782; BVRB_3g057580. DR Gramene; KMT15782; KMT15782; BVRB_3g057580. DR Proteomes; UP000035740; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 256 AA; 29204 MW; C7F7A82538B68CA6 CRC64; MPPPTSKRLR TTAHPRFFQP LCRDFLSNFK IPVSFLKFLG GDEDEIGGAK IAKLRDKTRS HVWNVKVGCD RRRLEDGWVK FCKDHNLQMG NFLVFKHLGN FVFDVIILDG IGCESELPII TEDEESQATR GNRKLGDGDG QGLQEKICAS LRSNNGRPYF SSIVTPSNLT SGITAIPKQF AIKNGLTRRW CDIELRDDKG QSRRMKLRFS KESGCSYIYS RPTLYEPYDL VRGDIIIFEL IDNGKNPAMK FYSKLQ // ID A0A0J8CS54_BETVU Unreviewed; 647 AA. AC A0A0J8CS54; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT14879.1}; GN ORFNames=BVRB_3g063950 {ECO:0000313|EMBL:KMT14879.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT14879.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT14879.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT14879.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090065; KMT14879.1; -; Genomic_DNA. DR EnsemblPlants; KMT14879; KMT14879; BVRB_3g063950. DR Gramene; KMT14879; KMT14879; BVRB_3g063950. DR Proteomes; UP000035740; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 647 AA; 73670 MW; 18FBA87B3B3DC26F CRC64; MEGSEGQQEG IQKTEQFFCK KLTKNDVLRS LSVPESHSDV FFEAQDENGE VAVFDLHSGE EWRFCLSFSK SNRQCTFLNG WLQYVKTKDL VAGHSVVFHR RVGLESTEKL HHQLFIECIA KSQRPSESGK PESSSSDRSG QRYTRNKRAF HAMLDCLHTL EDNMHLFVRE KCMNQSRLPV SQNKSRVSRN YKSDSLIIIS QIYAECENCI LYLSLFPKDY EIDRDTLVQL WLVAGLIKEP FAHDIAVAYL EALQSTGCIS CLMEDHRTGR VWYKINEFTI SSILSKRFNH LSVDKMGDAI IDRFVRAPDH VTVQGLPQNL GVLKNLPWMT TLWFLRGYES HIECLPYNFF MSLRVLKVLS LSRLRTLSEF PVSPKYGCSI TELKNLEDLQ GSLCLSRLQN VSSLAEVDQA NLRQKKGLSR LELRWSPRQQ KDSKLDDEII AYLEPYSYLT HLRILYYGGS AFPSWIANPS FKNLVSMTLF KCEQCQLLPS LGQLLSLESL NLNGLSGVKV IDLDFCGDNT PSGDGTPNVA FPKLQNFALT SMLNLEEWRD MGEFYFSSLH KLAIKNCPKL ASLCSLSNVL SLQVLEISYC PLLPSLPMGP LPASVGKLLI EDCPLLKSSC SELHGQDWYK MEHIPSIWID YEEISAP // ID A0A0J8CUY7_BETVU Unreviewed; 145 AA. AC A0A0J8CUY7; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT15783.1}; GN ORFNames=BVRB_3g057590 {ECO:0000313|EMBL:KMT15783.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT15783.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT15783.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT15783.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090059; KMT15783.1; -; Genomic_DNA. DR EnsemblPlants; KMT15783; KMT15783; BVRB_3g057590. DR Gramene; KMT15783; KMT15783; BVRB_3g057590. DR Proteomes; UP000035740; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 145 AA; 16472 MW; 7144D2E6095E4C9F CRC64; MSKASTSNAC PITSTDGIHK NGKRGLKRIE DIHKACSATK ATFKPRGHPY WRTFVQPSTL KWGGMAIPTD FAKEHDLANN CGEVIILDER GKTWQLSLRK YKRSVYIGRW SHFHRQNDLS AGDCLTFELI NTGELPVMKF YRTVS // ID A0A0J8D0J1_BETVU Unreviewed; 1082 AA. AC A0A0J8D0J1; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_2g035870 {ECO:0000313|EMBL:KMT17638.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT17638.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT17638.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT17638.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090043; KMT17638.1; -; Genomic_DNA. DR RefSeq; XP_010669598.1; XM_010671296.2. DR EnsemblPlants; KMT17638; KMT17638; BVRB_2g035870. DR GeneID; 104886784; -. DR Gramene; KMT17638; KMT17638; BVRB_2g035870. DR KEGG; bvg:104886784; -. DR Proteomes; UP000035740; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 970 1054 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1082 AA; 119553 MW; AD390F432C907135 CRC64; MKTTVTSNSV SQPTNSPSEG EKKTINPELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA SLKKDVDTQI PNYTNLPSKL LCLLHNVSLH ADPETDEVYA QMTLLPVPSF DKEALLRSDL SLKAHKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELVARDLHDT LWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQHLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVYGQQVSLG MRFRMMFETE ESGTRRYMGT ITGISDLDSV RWKSSQWRNL QVGWDESAAG ERRNRVSVWE IEPVTAPFFI CPPPFLRPKR PRIPGMPDDD PDADNPFKRT MPWLGDDPNA LTGLNLMQWM NMPQNSSLAN SMQANFLNTL PGSTAFQGLP GSDLSRQLGF TAPQIPQQNN SQYNAQRQVQ SVQQLDQLQK SSGSSNPLNS LIQSQQQLCD VTQQPRQSLI NQTLTSSQVQ SQLLQSQGLV QHQNSLQQSS PLQNHQFLGN LPLQQQQTSG SSQQQSLHQL QQVTDNQYQL HLLQRLQQQQ QSLLTQQSAM QQTNQMNQLQ EPQRPLLDVS QSFSRSLPSS RMLDMPQVQM TSLPQSQITP EQMIRSNSQT NLHFSQTPPI PKLSQQQSGV MPELQSQPGV ARNLMSNHPS TAASSSFTGA AAGGQSALTD DIPSCSTSPS TNNDPNGPQT IMNSRSHRSF ALGEGINQPS ANLMSCNGLE AMAAQNSFKE LHQKADVKPS VNITKVETQG HLTRQTYPNI PMDYLDTSSA NSASLSQNDM LSQTNLLSNP QSSFLGDTVQ DLEVQADVRN NIHTGASING QLGASLVPDA MLTKNVPSSD KKYSNNVSSG CMLSTYENSK DAQQELSSSM VTQSFGVPDV AFNSIDSAIS DSSFMNRGAW APATQYQRLR TYTKVYKRGA VGRSIDVTRY SDYEELKQDL ARMFGIEGQM EDRGRVGWKL VYVDHENDVL LVGDDPWEDF VNCVRCVKIL SPQEVQQMSL DGDFGNASLH NQACSSSDGG NV // ID A0A0J8D1J3_BETVU Unreviewed; 267 AA. AC A0A0J8D1J3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT19687.1}; GN ORFNames=BVRB_1g007440 {ECO:0000313|EMBL:KMT19687.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT19687.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT19687.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT19687.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090030; KMT19687.1; -; Genomic_DNA. DR RefSeq; XP_010674926.1; XM_010676624.2. DR EnsemblPlants; KMT19687; KMT19687; BVRB_1g007440. DR GeneID; 104890992; -. DR Gramene; KMT19687; KMT19687; BVRB_1g007440. DR KEGG; bvg:104890992; -. DR Proteomes; UP000035740; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 31388 MW; 476B01EFDA980DB7 CRC64; MRPPSSKKFS KKSRFFQPLV PNFKTNFVIP KSFHTHLQVD ETNRDKRKCV ILYDSKSTQP WFIEVEFPRF NFKSGWEIFC EDHNLQIGDF VVFKHQGNWV FDVLIYDPSG CEREFPAFDV DLSKAKVKPS KIPRDCDIGT SRDYIKGLEM MGNEEDPKST VTFEPTRRPY FRDVVNKTSL ASGDIEIPRE IAYEIGIGRR RFNFMLVDEE GKQWKMGLRY SLKCQKHYIY RWPSLYKAYG LKIGQSVGFE LIKSNGNTNT TMKFYSK // ID A0A0J8D2B4_BETVU Unreviewed; 668 AA. AC A0A0J8D2B4; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_1g002880 {ECO:0000313|EMBL:KMT20285.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT20285.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT20285.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT20285.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090029; KMT20285.1; -; Genomic_DNA. DR RefSeq; XP_010696146.1; XM_010697844.2. DR EnsemblPlants; KMT20285; KMT20285; BVRB_1g002880. DR GeneID; 104908672; -. DR Gramene; KMT20285; KMT20285; BVRB_1g002880. DR KEGG; bvg:104908672; -. DR KO; K14486; -. DR Proteomes; UP000035740; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 552 644 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 668 AA; 74885 MW; B47629A61808712D CRC64; MAQCQRTHSN ERLTGGESYA LYAELWRACA GPLVDVPQSG ERVFYFPQGH MEQLEASTNQ ELNHQIPRFN LPPKILCHVM NIELKAELET DEVYAQITLI PEKDQDEFKG SDSCLPEPPR PKVHSFCKIL TASDTSTHGG FSVLRKHANE CLPPLDMSQT TPTQELVARD LHGYEWHFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRDDKGDL RVGVRRLVRQ QAPMPSSVIS SQSMHLGVLA TARHAVNTST MFTVYYKPRS SQFIVGVKKF LEAVNHRFSI GMRFNMRFEG DDTPERRFTG TIVGVEDVCP HWSGSKWRSL KVQWDEAATF QRPDKVSPWE IEPFSASIPV NPTPPPISKT KRSRPSDLSI SETTGVSAGS NFWYGPAHTQ DFCSPGNQQD NIWTPTHGRN SFRFFADNKD ESKTSSVQSC STPSAFSCLV VPTKLSSDHP EQVNNGGKSA GGIRLFGFEL RNSSHIVPTL EKMTACPENL LDGDKILETS ARKSDEVQNT EVGEALKEQN QANSDSSLRE SQTKQSSQSS TRSRTKVHMQ GVAVGRAVDL TILEGYDELI SELERMFDIK GELQTRNKWA VVFTDDEGDM MLVGDDPWQE FCKMVRKICI YSSEEVKKVS CNKRLSSLST DEGTVLSLGT EQKSEACD // ID A0A0J8D4N9_BETVU Unreviewed; 632 AA. AC A0A0J8D4N9; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT19279.1}; GN ORFNames=BVRB_1g012860 {ECO:0000313|EMBL:KMT19279.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT19279.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT19279.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT19279.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090034; KMT19279.1; -; Genomic_DNA. DR RefSeq; XP_010683984.1; XM_010685682.2. DR EnsemblPlants; KMT19279; KMT19279; BVRB_1g012860. DR GeneID; 104898577; -. DR Gramene; KMT19279; KMT19279; BVRB_1g012860. DR Proteomes; UP000035740; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 262 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 508 601 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 262 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 508 601 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 632 AA; 70675 MW; 01B34D695A0485BB CRC64; MMSGRRPHFL EVFLPNLSSN RLKVPSKFVK HLGGRTSGSL SLVGPSGNIW HVNLFEYNGH LFFQDGWSTF VKDHSIECGD SLVFEYDGDS NFTVQIFDQS SCEKDEAFYA NCTQLASECC ENLGKKRERD VEAPKLKIVA EKKMRGSWLP VNLYVPAENK EHKLKTRTKN CQDFRKTVTS GHDITTKNFA QSSDRTVVLA IAAPRGPDGM ANSVDFRVRK IASKVKKVLK KTIKTHTQNI PSISKFIESK AAQYFTSTFP YFVRVMCYSN ISGNSTLKIP THFSRLHFPN CRIKVTLMNL DGKCWIVNSI PSAKQHMTTH TLCGGWIAFV RGNSIKIEDV CIFELVGNFE MRVRVIRLGL EGMECQIGSI PVDDDGVTSG RQCLGTVENV AQATGVHPSK DLEQTIEPCT FQDNKHEKKT YKRPYMLQEA ASSIGTVAGS IFVKGPAYAS KSSIETDDLL VCNAGETISY QTSANNQLDL QAVPTKNMQP RAEEASEAVA FNSPFPSFMK VMMSSNVGGS FTLAVPRKFS TAYLPCYKTE VILRNLRGES WNVTSGRYGY QTKFYGGWMS FARMNGLKVG DTCVFELIDE RVLQVRVFEG RQKALKNLND EAVADDLTVS IESIQFRDLP EL // ID A0A0J8D535_BETVU Unreviewed; 638 AA. AC A0A0J8D535; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT19278.1}; GN ORFNames=BVRB_1g012860 {ECO:0000313|EMBL:KMT19278.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT19278.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT19278.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT19278.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090034; KMT19278.1; -; Genomic_DNA. DR RefSeq; XP_010683976.1; XM_010685674.2. DR EnsemblPlants; KMT19278; KMT19278; BVRB_1g012860. DR GeneID; 104898577; -. DR Gramene; KMT19278; KMT19278; BVRB_1g012860. DR KEGG; bvg:104898577; -. DR Proteomes; UP000035740; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 262 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 514 607 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 262 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 514 607 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 638 AA; 71237 MW; 299F3E9F705D8749 CRC64; MMSGRRPHFL EVFLPNLSSN RLKVPSKFVK HLGGRTSGSL SLVGPSGNIW HVNLFEYNGH LFFQDGWSTF VKDHSIECGD SLVFEYDGDS NFTVQIFDQS SCEKDEAFYA NCTQLASECC ENLGKKRERD VEAPKLKIVA EKKMRGSWLP VNLYVPAENK EHKLKTRTKN CQDFRKTVTS GHDITTKNFA QSSDRTVVLA IAAPRGPDGM ANSVDFRVRK IASKVKKVLK KTIKTHTQNI PSISKFIESK AAQYFTSTFP YFVRVMCYSN ISGNSTLKIP THFSRLHFPN CRIKVTLMNL DGKCWIVNSI PSAKQHMTTH TLCGGWIAFV RGNSIKIEDV CIFELVGNFE MRVRVIRLGL EGMECQIGSI PVDDDGVTSG RQCLGTVENV AQATGVHPSK DLEQTIEPCT FQDNKHEKKT YKRPYMLQEA ASSIGTVAGS IFVKGPAYAS KSSIETGDDS TSDDLLVCNA GETISYQTSA NNQLDLQAVP TKNMQPRAEE ASEAVAFNSP FPSFMKVMMS SNVGGSFTLA VPRKFSTAYL PCYKTEVILR NLRGESWNVT SGRYGYQTKF YGGWMSFARM NGLKVGDTCV FELIDERVLQ VRVFEGRQKA LKNLNDEAVA DDLTVSIESI QFRDLPEL // ID A0A0J8DVU3_BETVU Unreviewed; 144 AA. AC A0A0J8DVU3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 12-APR-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS94980.1}; GN ORFNames=BVRB_013530 {ECO:0000313|EMBL:KMS94980.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS94980.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS94980.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS94980.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090624; KMS94980.1; -; Genomic_DNA. DR EnsemblPlants; KMS94980; KMS94980; BVRB_013530. DR Gramene; KMS94980; KMS94980; BVRB_013530. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 138 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 144 AA; 16842 MW; A673FF67E3226266 CRC64; MTSNGLMKIQ KTQAATNDDV VQRSFHNFQS ENPHFKVPIR SWNLAKLGLT IPLEYARAYL EGKHKQKIFI IGSGDEKRCY KLTLYVYLHN CHKVKAEIFG RSEMRKFYRD NNLKLGDGCV FELLDPQNNI YKFTIFRAPC LVKH // ID A0A0J8DW25_BETVU Unreviewed; 192 AA. AC A0A0J8DW25; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95030.1}; GN ORFNames=BVRB_013090 {ECO:0000313|EMBL:KMS95030.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95030.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95030.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95030.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090587; KMS95030.1; -; Genomic_DNA. DR EnsemblPlants; KMS95030; KMS95030; BVRB_013090. DR Gramene; KMS95030; KMS95030; BVRB_013090. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 192 AA; 22021 MW; 620AC3591EA3CF0A CRC64; MRKVSCAMKR KYDLKNKVVE EENEEDDISI EILDEFSPKL KQVKTTVSLD SSAIYDVECS SYKSKGNDKI SVDMRQKRLK RKLDAFVSSY PHFKSIMYHS HVTYKYKLAV PSSHASIYFS SKCKEIILNG PNGKSYSVKV YVGKKITELL NGWKSFVLDN DLQVGDACIF ELINKNSRSK NAYKVSIFRI SS // ID A0A0J8DYM3_BETVU Unreviewed; 315 AA. AC A0A0J8DYM3; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95980.1}; GN ORFNames=BVRB_003400 {ECO:0000313|EMBL:KMS95980.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95980.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95980.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95980.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090420; KMS95980.1; -; Genomic_DNA. DR EnsemblPlants; KMS95980; KMS95980; BVRB_003400. DR Gramene; KMS95980; KMS95980; BVRB_003400. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 36095 MW; A3CFB710202D74D7 CRC64; MPKRFRLNDN QENAQGKIQS VFSQAEEIRS KLDPRYPSFI KVMLKSHVTG GFWMGLPASF CEKHLPLNDT SITLETQSKK LYKAKYLVRK AGLSGGWKGF AICERLFVGD VLVFHLVSAA KFKEPARICD VTAPSSNTLS TFENFSIVIN NLLDYELADN IQWSYYELCC SQNGLLHDHL PKWMNHILVQ GIIIETVTIA DALRQCELST SKDTFVLWDK TLNALELLGM NIGFLRAHLD RLQKIVHDPE VATFRQKCLE LCSENARSKD KIRCLKEKLA EMKIMHNKRG ADIENLKAKV ENHELKFQEQ VHALW // ID A0A0J8DYM8_BETVU Unreviewed; 460 AA. AC A0A0J8DYM8; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS95985.1}; GN ORFNames=BVRB_003440 {ECO:0000313|EMBL:KMS95985.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS95985.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS95985.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS95985.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090420; KMS95985.1; -; Genomic_DNA. DR RefSeq; XP_019102987.1; XM_019247442.1. DR EnsemblPlants; KMS95985; KMS95985; BVRB_003440. DR GeneID; 104883781; -. DR Gramene; KMS95985; KMS95985; BVRB_003440. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 460 AA; 53132 MW; 2C399D8F115475B7 CRC64; MRNPVKKNKL RDEKINKENR GKLKRLRANK IRRKYLRLYQ PGQVLGKCRM VQVKRVQSKM IIEHPATIST MKQLLESHVS GGYNLALPTP FCRAHLPPKD TIMVLETKTG EQYEAKYLAR HFRLSGGWRK FARDNKLEAG DVVVFTLVEA TKFKVYIIRT SANEVTLPVH LLNPVNHVKQ SVSSQTTNQK LIIYRRGKEH QVAEIYNRRS LRLKLKNAGA GSMLYPGEIL FSNITNFEDF KAIMHELLQN HKLPYSTLHD YYELCCSQNA FLHAHLLKGI NPTLNYQIIT EAIKRIIFET VSIANALKTC KLSTFLYKCS LWEDTLNAYE GLGMNVGFLL ARLHHLRSLV FSLEGAADHR SRYKEASHER GLAEGEVKKL KLVLAKLRKV SDDMKLKPLE DKYREGNSWL ACVQAEITNL EVLLAELQKF FSQYDAHIES LKLNAKRHEF EFQEELSAPW // ID A0A0J8E489_BETVU Unreviewed; 340 AA. AC A0A0J8E489; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMS97935.1}; GN ORFNames=BVRB_4g097270 {ECO:0000313|EMBL:KMS97935.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMS97935.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMS97935.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMS97935.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090285; KMS97935.1; -; Genomic_DNA. DR RefSeq; XP_010695063.1; XM_010696761.2. DR EnsemblPlants; KMS97935; KMS97935; BVRB_4g097270. DR GeneID; 104907772; -. DR Gramene; KMS97935; KMS97935; BVRB_4g097270. DR KEGG; bvg:104907772; -. DR Proteomes; UP000035740; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 228 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 228 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38776 MW; 0D97A7797619D5D9 CRC64; MAEDGNDGDC TRFQEMTYWT NFKSFRFFVF LPADFLSQIM IPKIFSEKLK DILPQMAVLK SPGGATWDVQ LVRNNETLYF REGWKEFAEA HNFKENDLLI FKYERDSCFN VWVFDSRSLC EKAGSYFVWK SASRKNEAGE NSQLKRKKHT GDSVDAAVHN ENPELEGSDS ELDPAGASMK KSRRKTMCGL RTSDAEASTP YTDKSPPSAA EKERPVPIAD RELTKESFKV VMKNNNVSNY YRLSIPAPWS REYLAPKNQD VELRTDDKKW TARFNLEPRC GGGVLVSGWS KFVKDNSLKE FDVCVFQLVS QKDEPAIFDV LISRATPQVA NQPSSKPFSV // ID A0A0J8EBY6_BETVU Unreviewed; 318 AA. AC A0A0J8EBY6; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT00536.1}; GN ORFNames=BVRB_9g218340 {ECO:0000313|EMBL:KMT00536.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT00536.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT00536.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT00536.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090197; KMT00536.1; -; Genomic_DNA. DR EnsemblPlants; KMT00536; KMT00536; BVRB_9g218340. DR Gramene; KMT00536; KMT00536; BVRB_9g218340. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 313 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 313 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 318 AA; 37707 MW; 50E63476BAC4337B CRC64; MIPSAFEDKI TGNIPNRVIL KNSLGKIWLV KVGNIEDHLY FQGGWSKFVL ENFLKFGEFL VFTYIGQRIF DVMILGRDGC ERTLVHEEEE EIEVNEEEQV EDECEYENEE EDEDEDEDED EDEDEDEDED EDEDEEEEDE EMGNKKLRKF LPKKKTPKYN AHNDKDEHED EDYMPKRKFT NVLKKRNEYK YAAREDKEST GILKYLPKKN PFFITRLKRS EYERNRLMIP RDVSAKINVK YSEIIDLQDP KGEKWVAKRS IWESGQVCIQ GGWKKLCDSN KVKEDDTIIL EFLPRTKQSC ETINIKVQII NSDSVRSN // ID A0A0J8EC25_BETVU Unreviewed; 251 AA. AC A0A0J8EC25; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT00576.1}; GN ORFNames=BVRB_9g218740 {ECO:0000313|EMBL:KMT00576.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT00576.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT00576.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT00576.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090197; KMT00576.1; -; Genomic_DNA. DR RefSeq; XP_010691035.1; XM_010692733.2. DR EnsemblPlants; KMT00576; KMT00576; BVRB_9g218740. DR GeneID; 104904477; -. DR Gramene; KMT00576; KMT00576; BVRB_9g218740. DR KEGG; bvg:104904477; -. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 29060 MW; D89DFC88A721AAEC CRC64; MVTTAANYEE KRKQRLEENK KRMEQLNLHK LSQALKPSPT KNIKQSPAKK IKCRLDDLGV HFPIRRSSRM ADKPPPNYKE NAVEPFREGR RVFSYKRRDL LNRVYASDEH RLYAIDRAEK LESSLGSEFP AFVKPMLQSH VTGGFWLSFP LPFCKTYLPD EDEMFTLIDE SGDEWQSKYL ARKNGLSGGW RGFSIDHELV DGDALVFQLI EPSIFKVYII RVNSLEEDEE ESSDENVKAA VSEGKKDSRK K // ID A0A0J8EGI6_BETVU Unreviewed; 788 AA. AC A0A0J8EGI6; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_9g208190 {ECO:0000313|EMBL:KMT02091.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT02091.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT02091.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT02091.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090184; KMT02091.1; -; Genomic_DNA. DR RefSeq; XP_010689577.1; XM_010691275.2. DR EnsemblPlants; KMT02091; KMT02091; BVRB_9g208190. DR GeneID; 104903260; -. DR Gramene; KMT02091; KMT02091; BVRB_9g208190. DR Proteomes; UP000035740; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 660 742 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 788 AA; 88000 MW; D6FDF6F4B3DF69B5 CRC64; MEIDLNHEVS EVEKIAYCYG DCEKGIYGCC VSSSSSSCSS NSSPSAVTSY MELWHACAGP LISLPRRGNV VVYFPQGHLE QVVASSSPYS PVDLPTYDLP PQIFCRVANI QLLANKENDE VYTQLTLFPL PEFGRISLGS KEVEGLGGEE DAAEVLPKST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKLQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSVFVSQK NLVSGDAVLF LRGEDGELRL GLRRAIRPKS GVPDSVIGKQ SMYPNVLSAV VNAVSTKTMF HVFYSPRASH PEFIVPHQRY VKSFSNPISA GTRFRTRIEV DESPERRCRG IVVGVNDIDP YKWPNSKWRC LLVRWDEDIV SDKEERVSPW EIDPSVSLPP LSIQSSPRIK KLRTAGGLGN LDFEESVRSS KVLQGQENVS FISPPYGCDK VHSMLDNEPG AAGQQSLSST RLPPINVSEF RSLAQPMTYT GILESNRFPK VLQGQEICPL RSLTGKMNFN PSAWIKPSLA TSYFNLYQGP KTSFYPLASE GVRNMYFPFD IYKSDQDSVT VPCKNTMAKE NSVFNLSSFH SNGFRKKDQN PNIENEDRPA ENMYVHNSLN TSRNDQKDAP GNGPRPHSKL FGFPLERETS STNSEICSRR SCTKVHKQGS LVGRAIDLSK LKSYADLMNE LEHLFGMEGL LQDPAKGWRI LYTDKENDMM VVGDDPWNEF CDVVSKIHIY TREEVEKMTA GMVTDDNQSC LEEAPSMLDA SKSSSVGQPD SSPTETKN // ID A0A0J8EK74_BETVU Unreviewed; 1142 AA. AC A0A0J8EK74; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 18. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_8g190650 {ECO:0000313|EMBL:KMT03376.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT03376.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT03376.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT03376.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090170; KMT03376.1; -; Genomic_DNA. DR RefSeq; XP_010687536.1; XM_010689234.2. DR EnsemblPlants; KMT03376; KMT03376; BVRB_8g190650. DR GeneID; 104901644; -. DR Gramene; KMT03376; KMT03376; BVRB_8g190650. DR KEGG; bvg:104901644; -. DR Proteomes; UP000035740; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1017 1110 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 512 569 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1142 AA; 127712 MW; 3B4FFCB41E097045 CRC64; MKAPSNGLMA NSGEEGRVIN SELWHACAGP LVAVPPVGSL VVYFPQGHSE QVAASMQKET DGIPSYPNLP SKLICMLHNV TLHADPETDE VYAQMTLQPV NKYDRDALLA SEMALKQSRQ PTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELMAKDL HSQAWTFRHI YRGQPKRHLL TTGWSVFVSS KRLFAGDSVL FIRDEKSHLL LGIRRANRQQ PALASSVISS DSMHIGILAA AAHAAANNSP FTIFYNPRAS PAEFVVPLAK YNKAMYTQVS LGMRFRMMFE TEECGVRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERPSRVSI WDIEPVVTPF YICPPPFFRP KFPKQPGMPD DESDMESIFK RGMPWLGDDF GMKDVPNSIF PGLSLVQWMS MQQNNQFPGA QSAGFPSMLT ASALHGGLGT DDPSKLLNFQ APSLSVPNFQ FNKAVQQNQV GQLQQQPAAW SQQQQLQQLL QNNSQQQQQP LQQQLQKQQL QQQQQQQQLQ QQQQQQLQQQ QQQQQQQLQQ QQQQQVHQQQ QQQQQQQQQQ QPQQPPAPQK QQIPQLTSVN SGLVSPNQNL NPNLSQSPMY SQLHHQQMVG GNNQAPQNVS ANKDPVHITS LPPDMQFQQQ TEQQSNVLQR LQQQHQHQQQ AQLQQSSQQL FQESLSQRPP VLQNLSEHQL QFQLMQKLQQ QPQTQQQQAQ QHQHQPQQSH PLLSPVTSQV QHQVTTQQHA GQQNQVLQQR SLSQYQPQVS VSTISTTQLM SSPPMSAVQL QGMQKTSGIA RSLSGPTDGD APSCSTSPST NNCQIPHSSF LNRNQQVRNM LVEHSVVEPN SNMLQDVQEK SDIRIKHEIP SSKVIEPSRI NGIITDPLEA SSSVTSYGLD ASGLQQNLSL PSFGLDGDVQ SHPRNSIPLS TAMDGLTPDT LLSRDFDSGK ELHNLLSNYN GAPRDIETEL SAAAMSSQSF GVPNMPFKTG CSNDVAAIND PAVLGGGMWP SQTQRMRTYT KVQKRGSVGR SIDVTRYKEY DELRRDLARM FGIEGQLEDP QRTDWKLVYV DHENDILLVG DDPWDEFVNC VQSIKILSSI EVQQMSLDGD LGSGPIPNQA SSGSDSGNAW RYDDHSAASF NR // ID A0A0J8ERA0_BETVU Unreviewed; 799 AA. AC A0A0J8ERA0; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT05596.1}; GN ORFNames=BVRB_7g167370 {ECO:0000313|EMBL:KMT05596.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT05596.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT05596.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT05596.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090152; KMT05596.1; -; Genomic_DNA. DR EnsemblPlants; KMT05596; KMT05596; BVRB_7g167370. DR Gramene; KMT05596; KMT05596; BVRB_7g167370. DR Proteomes; UP000035740; Chromosome 7. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 657 759 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 657 759 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 799 AA; 87319 MW; 292EA6987083F263 CRC64; MNEGMKNLEL HGEDLQEFGV FHTPQEGMKD EEEIWFETAS LQQENIDNSV KNNNEINTDN EFLDVDVSDP CSLFCADFPA LPDFPCMSSS SSSSSTPVGT TKPFGACSTA TSSSASTASS GAASWAVLKS DADHDPSSST AVSVDIVAPP PMDHRREVSQ EGVGMVLDDV DQCMDIMQNF GCIDLLENTD ICWDPSPLFE ENGDGDERED NHYRFLQSAE VIENKIVDDD DDDRVFEKFM QQQQQQCGGS ITTSHTTSGG VVDVVFGQSS GGGEDGGVNF GSGSSPDDLA MVFFEWLKSN KEMISAADLR NIKIKKSTIE NAAKRLGGGK EGMKQLLKLI LQWVQNHHLQ NKRMTTAVED EIQVASVNNS HNPSYSIQEH ANNENNNNKN STTPSEPSGN PSGQTEQQCF SPTTWLQPTP APSSFVSDSA PMVSLPAPPP PAGFGPGVGY MGGDLYSGGT PMASYPPPMP PSDYHHSWGP TPMQYGLGPH YGSFGDATQF GGYGNPPAYP GFYYHPGPAE GLVRLGSSAT KEARKKRMAR QRRFFSHNHR SSHTNSQNNN NSNGVVNQQM INQMAEQHAA GIGNGNCGVA PHGNWVYWPP PPPSHVPPPQ VNRSGPMVGQ MMPPQPAIER SGNGFSKQVG IEKKQGWKTE KNLRFLLQKV LKQSDVGNLG RIVLPKKEAE THLPELEARD GIPIAMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGDFVR SNGLQEGDFI VIYSDVKCGK YMIRGVKVRS QQQSMKAETT NKKSNKTQKT EGTSSPAGRL SSSPNIMQS // ID A0A0J8ETM4_BETVU Unreviewed; 912 AA. AC A0A0J8ETM4; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT06526.1}; GN ORFNames=BVRB_7g157000 {ECO:0000313|EMBL:KMT06526.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT06526.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT06526.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT06526.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090137; KMT06526.1; -; Genomic_DNA. DR RefSeq; XP_010683488.1; XM_010685186.2. DR EnsemblPlants; KMT06526; KMT06526; BVRB_7g157000. DR GeneID; 104898157; -. DR Gramene; KMT06526; KMT06526; BVRB_7g157000. DR KEGG; bvg:104898157; -. DR Proteomes; UP000035740; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 311 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 576 626 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 311 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 912 AA; 100270 MW; 385F113E7F93EADD CRC64; MGLKTCMNIL CGTTSSAEWK IGWNLRSGEL ANLCDKCGYA FEQRIYCEEF HSDDSGWREC VTCGKRLHCG CIASLTLIEL LDGGGVRCIG CARNLDPSLS SNAGKCDGSG ACNVTEYNAG MKHLGNYKEI NKSNQLSVIQ NPNSNIAFGF LKQEELLLPP AQAGSSWVSN LPQSSMGYFQ KARLEVSTSG MQTKDNYGPV GHPNLNIALG VQTGNLQATS NAIVDEREQR KISDTFHQGY VSPNLLPTPP KLAFSPASDT NPSVIPQMRV ARPPVEGRGR HQLLPRYWPR ITDQELQQIT GDSNCTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPIKI QDVKGKEWLF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ASNSASLQDA ASSAIRNAPL SSESFFSGVI ENLPVISGSS GLIQSMKGST DTHMNALSRH LDSAGGNVRW HNSEKCNERT EEGMLPTSIQ MLDRKKSRNI GSKSKRLLID DQDVLALRLT WEEVQGMLRP PQSARPSVVV IEDYEFEEYE EPPVFGKTSI FTARSSGAVE QWTQCDNCSK WRRLPGDILL PSKWTCADNV WEQSRCFCSA AEELGPKELE NFRHLSKDAT KRRMVMANRM AQEQESSGLN ALASAAALGD NSNDPGTSSV AATTKHPRHR PGCSCIVCIQ PPSGKGKHKS TCTCTVCMTV KRRFKTLMMR KKKRQSEQEA EIALKNYQKQ NPNRNADKTD PENDNRSQLE HRHRTEDDDL QQVGPTQIND DRVETPISLL AESGKSLDLN CQPDREEDSR TRASEASLTN LLQLASLPLD AYMKQNGLTS LSSEQLAGSK SLLGQATGEA AGKAVDDHSG GQGPQEHVNH SNGSCEPEVK QQSDPLLDSP PL // ID A0A0J8EZB8_BETVU Unreviewed; 350 AA. AC A0A0J8EZB8; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT08566.1}; GN ORFNames=BVRB_6g138460 {ECO:0000313|EMBL:KMT08566.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT08566.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT08566.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT08566.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090113; KMT08566.1; -; Genomic_DNA. DR RefSeq; XP_010680983.1; XM_010682681.2. DR RefSeq; XP_010680985.1; XM_010682683.2. DR RefSeq; XP_019105783.1; XM_019250238.1. DR EnsemblPlants; KMT08566; KMT08566; BVRB_6g138460. DR GeneID; 104896014; -. DR Gramene; KMT08566; KMT08566; BVRB_6g138460. DR KEGG; bvg:104896014; -. DR Proteomes; UP000035740; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 329 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 329 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 160 190 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 350 AA; 40701 MW; B89B87D6D1ADCCA2 CRC64; MVDVCVQCKA WRKQQYWDAS SGNKHHFFKI MLGEFRSFLR IPRKFIAESR VKLSEKVTLR GPSGNIWTTY LARRGEDYVL ENGWQDFVKD HSLNEGDFLV FRHVEDSMFN VLIFDTTGCE REGSYFIEGS GQLCADSCCA MRNNTNPQTH TTFKSADEGK EKLDEEGLVE EEEEEEEEEE EEESGGEQNE PDNQGTRYLK YYESSRREIT KKDMERAFHL ASKHLTKQPS CKIRMKMTHV HHLFILTIPR EFADNCLPRK SQVIRLRVGS KTWRVRLNRR NAQCTLTGGW AQFVFENNLE TEDMCVLELV DAGTSQRPTI LDVHIFRAVE EIVPLKVVKS FQSPMNSQMS // ID A0A0J8F2P8_BETVU Unreviewed; 612 AA. AC A0A0J8F2P8; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT09946.1}; GN ORFNames=BVRB_5g121620 {ECO:0000313|EMBL:KMT09946.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT09946.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT09946.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT09946.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090108; KMT09946.1; -; Genomic_DNA. DR EnsemblPlants; KMT09946; KMT09946; BVRB_5g121620. DR Gramene; KMT09946; KMT09946; BVRB_5g121620. DR Proteomes; UP000035740; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 189 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 335 428 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 504 602 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 189 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 335 428 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 504 602 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 612 AA; 70493 MW; 9117868B07D6EF57 CRC64; MLSPSSQFKK LRIPKNFAGK LRNEDCNVAI LNVPTGETRK VELVEEENEL WFGNGWQEFV EYFSIGFAYF LVFKYEGNSN FLVHIFNLTA CEITYPCNAS NNVSKVRHEP CVKGNEYDKE EKPEISQKKS DVEVQQLDSE DDQYISDNEE VFNARKGVRP VGNPLWFKKH EELLKVAIAA GISMPKNPFF VADMKPYVLN KGFLNIPLHF GRRHLRCKLN ECKLVKLEAY DGRQWEVNCF LDYRKMAFRQ GWMMFARHIG LEAGDICAFE LINAKKTKKS TIIVVSKKRK SKHTFITFTP ITYILYMKKS SMNPKTNKEE EKIIHRNYGV IKPRSFFKLI LTPISQSKKL RIPDNFARIY SNELSTTSIL KVPTGETQEV TLLKEDNQLW FHNGWQEFME YYSISYAFFL LFNYDGNSKF SVLIFNPTAC EISYQRNPSN SISKEQCEIC PEKMNGDNEE ITSDTKEDTL FGHGYSMSRA SKNYEALMKD VVAAGISRPK RPFFVTDIKS YALDTGLYLN VSLAFVRDHL GCKGDVTKSV KLEAYDGRQW KVRCIKGQYR CTFGSGWIIF AREVGLEVGD ICVFERTRAE ECLLKVHIAK KSQINAASIS SA // ID A0A0J8F4Y4_BETVU Unreviewed; 840 AA. AC A0A0J8F4Y4; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 17. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_5g113390 {ECO:0000313|EMBL:KMT10926.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT10926.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT10926.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT10926.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090103; KMT10926.1; -; Genomic_DNA. DR RefSeq; XP_010678349.1; XM_010680047.2. DR EnsemblPlants; KMT10926; KMT10926; BVRB_5g113390. DR GeneID; 104893911; -. DR Gramene; KMT10926; KMT10926; BVRB_5g113390. DR KEGG; bvg:104893911; -. DR Proteomes; UP000035740; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IEA:EnsemblPlants. DR GO; GO:0010047; P:fruit dehiscence; IEA:EnsemblPlants. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0008285; P:negative regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0048481; P:plant ovule development; IEA:EnsemblPlants. DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants. DR GO; GO:1903288; P:positive regulation of potassium ion import; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 714 807 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 840 AA; 94147 MW; 898A75F2652D7DD9 CRC64; MSSSEISIKA TDEGGAIKAG QQHHRHHQVP GAGKVDPETA LYTELWHACA GPLVTVPRLN ELVYYFPQGH IEQVEASTNQ VADQQMPVYN LPWKILCRVI DVQLKAEADT DEVYAQVMLL PQREENSLEK EPQPPPQPHF HVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELVAKDL HGNEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQQ GIVPSSVISS HSMHLGVLAT ALHAISSGTM FTVYYKPRTS PAQFIVPYDQ YMESVKNQYS IGMRFKMRFE GEEAPEQRFT GTIVGIEDAN PNRWQDSKWR CLKVRWDETS TIPRPDRVSP WQIEPALTPP TINPLPVTRA KRPRANVMTQ SSESSVLTRE GFSKVAADAS PVGGFSRVLQ GQEYSTLRPS LADSNESETV EKPHVWPNSV DEEKFENANA SRKYVPENWI SATRPEPTYA DLLSSFGVHN ETASGFHSPY QTAASSPMKK HILDQDGRFS MLGSSWSIMP TSLSLNMSES TMKIHPQSGN VSNQAPGNTR YGGFNEMSVL RGHRIDHHNG SWRMPPPGQS CFESREIATR PSQIEQEPIK SKDGNYKLFG MSLISSPTNQ EPSTFSRRNV DEPATNLPPM LHHHNSEPDR SLEQSKGSKQ MDNLPACSEQ DKKMPCSQSL SRDAQAKVQG GSSRSCTKVQ KQGIALGRSV DLSKFSDYDQ LVEELDHLFD FNGELKIPEK NWLIVYTDDE GDMMLVGDDP WQEFCSMVRK IFIYTKEEVQ KMTPRTLNAR IEENTPAAGG SDSKEAKQSL PSSASNAESH // ID A0A0J8F9G8_BETVU Unreviewed; 457 AA. AC A0A0J8F9G8; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT12506.1}; GN ORFNames=BVRB_5g104330 {ECO:0000313|EMBL:KMT12506.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT12506.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT12506.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT12506.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090086; KMT12506.1; -; Genomic_DNA. DR RefSeq; XP_010676939.1; XM_010678637.2. DR EnsemblPlants; KMT12506; KMT12506; BVRB_5g104330. DR GeneID; 104892653; -. DR Gramene; KMT12506; KMT12506; BVRB_5g104330. DR KEGG; bvg:104892653; -. DR Proteomes; UP000035740; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 457 AA; 50095 MW; E105B561E0700997 CRC64; MDYPYKGWML SNHSSATTAT ATKMEVHVDD EEDDKIVIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSNNEKG LLLNFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDVVSFQ RGVGEVGKDK LFIDWRRRPD ASGLHQHLQY HHHHSHNRTA LPAAAAAAAG GCWTSNTGPT FVLRSHPHPH SHPHPHPYSQ PYPYPLLQGG GGGGGGVWDH QGNTTTHLSL MNVLPSQSHT PPLRRGMGLG GGGGGGSYGY GYGNVVNPYP VTGSLIFLRS SSVPTTTSVG GGGTTSLTQQ IVEDQGASSM MQVQRGEGGV EAMPMVYESV PVVQGKAAAK RLRLFGVNMD CPISHQTHDF DILSSSLASS STPNYHHHHH HHQHHQHEQQ QHHTTGSISM GPPSSSSFST PTSHQHSLRS FYNGTTHPEK GKSSSTSSPS MSLDLDI // ID A0A0J8FBZ0_BETVU Unreviewed; 813 AA. AC A0A0J8FBZ0; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_4g084470 {ECO:0000313|EMBL:KMT13356.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT13356.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT13356.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT13356.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090076; KMT13356.1; -; Genomic_DNA. DR RefSeq; XP_010675199.1; XM_010676897.2. DR EnsemblPlants; KMT13356; KMT13356; BVRB_4g084470. DR GeneID; 104891238; -. DR Gramene; KMT13356; KMT13356; BVRB_4g084470. DR KEGG; bvg:104891238; -. DR Proteomes; UP000035740; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 716 800 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 813 AA; 90362 MW; FF43A307BD29A55A CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVCLPTAG SRVVYFPQGH SEQVAATTNR DIDGQIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD IYLPADFGIP SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELVA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAANT NSCFTVFFNP RASPSEFVIP LSKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDTVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHA GTSSLSDNID DAANSLMWLR GQGGEQGLNS VNFQSLGMYP WMQTRVDSLL PLSNQNQQYQ ALLSSGFQNL RGGDIINPQM MQFQQPMQYL QQSNSQIPML QQQQQLIHPS IAQQLLQGQS QVSKDNLPQR VLPQEYFKHN EGLANQQLCS PEAFSLPNNE VQSRQQLSMS SSHGKTDSNA ANAELSSSTH SSMQNMLSSA RTEGIGNLSD ISNVNHTLLN EQTSQHPLVS LNSYTPINAF GDAVSLPPYP GKDASLETGN CSLDVQNHNV FGANLDSSGL VLPMTMPTNY RASSNDTDLC SIPSGASGFH NSMYGCNSNS PELHSEGQGD LQNPTRTYVK VYKSGSVGRS LDISRFSSYH ELREELGQMF GIEGMLDDPL RSGWQLVFVD RENDVLLLGD DPWEAFVYNV SYIKILSPED VQKLGKHGTE AYS // ID A0A0J8FD58_BETVU Unreviewed; 281 AA. AC A0A0J8FD58; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT13751.1}; GN ORFNames=BVRB_4g081300 {ECO:0000313|EMBL:KMT13751.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT13751.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT13751.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT13751.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090070; KMT13751.1; -; Genomic_DNA. DR EnsemblPlants; KMT13751; KMT13751; BVRB_4g081300. DR Gramene; KMT13751; KMT13751; BVRB_4g081300. DR Proteomes; UP000035740; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 32551 MW; FC8F2BFE853C6FDE CRC64; MHSRNSDTQD FPEFFKVYLP EHNSNQLVIP PDFVKNFEGK TMTKVILKNM QGEGWKVELE KAECKLLMTK GWESFVIDNS LARGEFLIFT YEGSGVFFVK IFSTNGCEKD ESTAIVDQPY AKLKQEANLD KNYSCHAGAC EKTYSERCME VKQVSEDSCE LKNIRFKKVH DAKPYHLHIP AGIFSEYNIK PPLVNFPEII LLRDQRGVSQ EVKVYKTKDR RVLLTSGWRN FQLESKLVKG EAYEYEIILG EGRKIKEIVL LNRPTKTVTQ GRHTLLRLRS R // ID A0A0J8FH15_BETVU Unreviewed; 285 AA. AC A0A0J8FH15; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 07-JUN-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMT15186.1}; GN ORFNames=BVRB_3g062990 {ECO:0000313|EMBL:KMT15186.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT15186.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT15186.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT15186.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090064; KMT15186.1; -; Genomic_DNA. DR RefSeq; XP_010673028.1; XM_010674726.2. DR EnsemblPlants; KMT15186; KMT15186; BVRB_3g062990. DR GeneID; 104889494; -. DR Gramene; KMT15186; KMT15186; BVRB_3g062990. DR KEGG; bvg:104889494; -. DR Proteomes; UP000035740; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 181 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 181 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 33217 MW; F4B7A63E529DD253 CRC64; MTSNSTFSSP TKKGPSFFKV MDVPSTKNHM LRLPKNYVKS YYKEQFAKDN VQLRVIGDCR NWRVELLKES GKVWLSKGWE NFVKTYSLKY GYLLLFSYDE KDSEFHVRIF DTTCSEVDYD FVFNHHTNKD KEVIELSSQD EYMSTDEVID DDISSEDDVA MDGNTSSIPC HAHGFQSPNP HFKVCIGCWS STSRGLTIPL DYAKVHLKDK HKKAIILKGP NNKKRCYKLK LYVYLENCYK VKAQIYGTAW RKFVLDNELK IKDDCVFELI HPKSNTYKVI IFRAP // ID A0A0J8FWK2_BETVU Unreviewed; 577 AA. AC A0A0J8FWK2; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=BVRB_1g000500 {ECO:0000313|EMBL:KMT20031.1}; OS Beta vulgaris subsp. vulgaris. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta. OX NCBI_TaxID=3555 {ECO:0000313|EMBL:KMT20031.1, ECO:0000313|Proteomes:UP000035740}; RN [1] {ECO:0000313|EMBL:KMT20031.1, ECO:0000313|Proteomes:UP000035740} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Taproot {ECO:0000313|EMBL:KMT20031.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ090029; KMT20031.1; -; Genomic_DNA. DR RefSeq; XP_010672559.1; XM_010674257.2. DR RefSeq; XP_010672606.1; XM_010674304.2. DR RefSeq; XP_010672677.1; XM_010674375.2. DR EnsemblPlants; KMT20031; KMT20031; BVRB_1g000500. DR GeneID; 104889090; -. DR Gramene; KMT20031; KMT20031; BVRB_1g000500. DR KEGG; bvg:104889090; -. DR Proteomes; UP000035740; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000035740}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000035740}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 577 AA; 64061 MW; 433A5CB48450E714 CRC64; MASDHRQRHC FYQQRREIKR EIWKACAGSL IQTSMVNSIV YYFPEGHIQQ ASSPVSISGV MNLKNYYVCR VLELSFLADP DTDEVFVKYR LQPLENITNF VLQNSEKNNV VENKKNDVVS FAKVLTPSDA NNGGGFSVPR FCADKIFPPL DFTADPPVQK ITITDMHGEG WDFRHIYRGT PRRHLLTTGW SKFVNSKKLI AGDSVVFIMD ESNGGLFVGI RRAVKMSNED VSGWGLIPKP PSTSGSGGGF SRAHRGRVPA EAIVEAVQKA ENGMEFEVVY YPRAGLPEFV IGVEKVQMYQ WDIGMRVKMA QESEDGSRLT WYNGTVSGFL CNKNPALGGP LWRVLQVTWD EPEILQNMTN VSPWQVEFIA PAPPIHAPLP PMKRLKGVQD SELLADREGD LPLPPMRFSS MMGHVNPPYF SHETFPAGMQ GARQIPFLLT SLPNINNDST HKGCPDDKVD STMQKTEAVS TDLNIGSIPS ETPSPDSQNS VHFFSMAATK PHSCNVTKIG STSFHLFGAF IQVEPRLANT NDISTEYDDS STKCARKDVD KSLLDPDKKS DDGLSAQRFS GVDGDAL // ID A0A0K9NIQ0_ZOSMR Unreviewed; 655 AA. AC A0A0K9NIQ0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_94G00330 {ECO:0000313|EMBL:KMZ56508.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ56508.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ56508.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ56508.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ56508.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01002171; KMZ56508.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 558 639 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 655 AA; 72601 MW; D002BA4F62636ECC CRC64; MKEPDKCLDS QLWHACAGGM VQMPPVNSKV CYFPQGHAEH AQGNVDFGST RRIPSQILSR VTSIKYMADP DTDEVFSKIR LIPITASNKL NNEMDIVEDD DDDDDLGLGV EAPEKLASFA KTLTQSDANN GGGFSVPRYC AETIFPTLDH SADPPVQTVL ARDVHGEQWK FRHIYRGTPR RHLLTTGWSS FVNTKKLMAG DSIVFLRAEN GELRVGIRRA KRGIGVGPDS PSGWNTPSNI YAPHYSTGFS VFLREEENKL VKNNGIHGTG GGLGKGKRRV TTESVIEAAN LAANGHPFEV VYYPRASTPE FCVKASAVKA ANRMHWAPGM RFKMAFETED SSRISWFMGT IAGVQYSDPI RWPHSLWRIL QVSWDEPDLL QNVKRINPWL VEIVSNLKPM HLSSFVPTLQ PRKKLRMNNH PDFSFDGQYP TPVFSVGSPI NNNNLYLPFR SFTKNITAGS TPSSIQGARH AQIGISLSDK LHPRISTNHQ QDNNISCLLT IGNSSPETTK SSSSLSSPTS PSSFLLFGKT ILTEKQMRTV SNGVDVGDNL LAKLSLETGH CKVFMESEDV GRTLDLSSLS SFDEMCSKLA DMFDIKKSDM RADHVHYRDS SGSVKLAGDV PFGDLKKSAR RLMILLDANT TRLVENSNNQ MQMHI // ID A0A0K9NJB0_ZOSMR Unreviewed; 503 AA. AC A0A0K9NJB0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ56698.1}; GN ORFNames=ZOSMA_92G00610 {ECO:0000313|EMBL:KMZ56698.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ56698.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ56698.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ56698.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ56698.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01002147; KMZ56698.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 341 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 392 490 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 341 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 392 490 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 503 AA; 57446 MW; 0458AA5E60D7C60E CRC64; MTIGNRMPSD EQNKHFFKII FPETIDKLTI PPAFITQIDC VRSNSLASLK GPSGVTMTVD LVRDANGMCS SNGWKSFIED NCISIHDFLL FRYEGNMSFA VSVFDTTGCE KKYDFTSLAR RMAVDDNQGG LAVGNGLASA LDFSNEIHQH EEIVVKQEEV DYPSVLSHTD HPQTPSQIVK GQSILKLPKI SMKASRNQHW NSSNKTRGKF MIKVRKLSVV SNRREVTDDE VKNAYDKAIS FTSKNPTMMV VMRECYVYRG FYMNIPVAFI RDHLPAKTCD IILCDPKNIE WTVKFVCYMG RGGFSANWGS FSQANYLELH DVCMFELIQP NKFRVHIFRV VEELTLSSQV RNDVDDSVSL PDFEGKLDAT EGNGNNMVLS PTPMKLKNPY FVITIKKYNI SSSQPYWRIP TTFELFDYLM EKTSVTLVDL KQHSWKINLR QYHLSSNKSL RSTGGWLQFI RDNELEIGDV CSFELKKKDI SPIFTIIVHK SRRDSCNMSP PLR // ID A0A0K9NJZ2_ZOSMR Unreviewed; 775 AA. AC A0A0K9NJZ2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_8G00830 {ECO:0000313|EMBL:KMZ56938.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ56938.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ56938.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ56938.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ56938.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01002110; KMZ56938.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 678 762 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 775 AA; 87496 MW; 698597C336C194B5 CRC64; MKASTVCSSG EPSQEQQGSR KNCLNSELWH ACAGPLVSLP NSGTRVLYFP QGHSEQVVAS TNKEVEGHIP NYPNLPPQLI CYLHNVTMHA DTDTDEVYAQ MTLQPLSAEE QKDNYLPIEI GIQTKQPMNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFTMQPPAQE LIARDLHDVE WKFRHIFRGQ PKRHLLTTGW SVFVSAKKLI AGDSVLFIWN ENNQLLLGIR RANRTQTSIP SSVISSDSMH MGLLAAAAHA IPTDSQFTIF YNPRVSPSEF VIPLSKYVKS VFHTRISIGM RFRMLFETEE SSVRRYMGTI TDIGDLDPVR WPNSHWRSVK VGWDESTTGY RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WYPGASSLQD DGNSLMWLRG ETGDHDLQAL GMSQWMQRTV EPPMLNIEHN YYQEMAAAAL QDIRSSDGLK QQFLQQHPLQ FTHQGLTNSD NNQVPLQQII PQAHQLRQIS SNLQLHGITE NNHSCNSPHP TFLQSFPEHA NQQVQMQQVY HESFQIPNNQ IQQKTVFPDA TTNFSQASNP IQQNMMATLL KFSKSSPPSS IMNDPTFTTN SVSLTPEITE HGNIDPQNHT LFGVNLDNQS PLITGPMPSL AITSSLKNNV NGNGSGSTLP YGNSCFQNNM YGCTDESPSL LHSVDKTETF VKVYKSGSVG RSLDITRFND YNELREELGQ MYGIEGLLED PLRSGWQLVF VDRENDVLLL GDDPWESFVN NVWYIKILSP EDVHKMGKQC FESFS // ID A0A0K9NLT1_ZOSMR Unreviewed; 317 AA. AC A0A0K9NLT1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ57701.1}; GN ORFNames=ZOSMA_82G00130 {ECO:0000313|EMBL:KMZ57701.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ57701.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ57701.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ57701.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ57701.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01002027; KMZ57701.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 317 AA; 37342 MW; C3912D4F906C378F CRC64; MGFYRELQKT MRNKKSETSS STVTENVRRT VFPRFFKVFL PDLCSHRLGI SPAFIKHIDD RNFPWTCSMK GPSGHIWNVE VVSEEKDGVF FDRGWKEFAK DHSLELGNFM VFEYIGDRRF SMLLFDSSAC EKVEALSAKP SGCSKEVVLS SLKRREDRPN FRYLNRRVLL SHRRSVTSSE IRRAMEAARS FKSDFPFFIR SIRRSDIYLH NKMYIPKQFA AHYLPNASVD FILQNQAGKL YNVRVYWNKK DQYITSGWRV FVFENNIEED DACVFELVKE RQFNIYIHRV VKELAPPTWA IEREDSSAIK TMIEISE // ID A0A0K9NLZ7_ZOSMR Unreviewed; 137 AA. AC A0A0K9NLZ7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KMZ57809.1}; GN ORFNames=ZOSMA_81G00260 {ECO:0000313|EMBL:KMZ57809.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ57809.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ57809.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ57809.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ57809.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01002015; KMZ57809.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 137 AA; 15487 MW; C8105552422EA57D CRC64; MGKKDSDETS LVVYRSQIEF PVVPLSGNPF FTCIVTKSNI KSPFQLVIPR SFQDYLPPTT VPTTLFCRNG IWELNYFGDK GRLKRFDQGW KTFALENDLK IGDACVFELL QSGEDLLIFA VQILDGTVPI FSIVVDE // ID A0A0K9NMT9_ZOSMR Unreviewed; 225 AA. AC A0A0K9NMT9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KMZ58066.1}; GN ORFNames=ZOSMA_7G00960 {ECO:0000313|EMBL:KMZ58066.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ58066.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ58066.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ58066.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ58066.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001978; KMZ58066.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 26210 MW; 4037A20E93A4FA3B CRC64; MADYEKLRQK KLEENKRKID ELKLNQLSVS LSGSVLKPSP NKQFKRRLVD HVPKLLSLRR SNRLANLPEP VKYKEDQLYY LMEKPRRRTR SYTSTRKDLI NRVYASEESR DLTERKAYKL MDEKQSGFPS FVKPMSQSHV TGGFWLSPPK SFSVYLPKSN EYLTLIDEDG NESKSLYLAR KNGLSAGWRG FSIEHGLVDG DALIFELINS NTFKIYIVRV RDHCS // ID A0A0K9NPL0_ZOSMR Unreviewed; 221 AA. AC A0A0K9NPL0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ58704.1}; GN ORFNames=ZOSMA_74G00450 {ECO:0000313|EMBL:KMZ58704.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ58704.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ58704.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ58704.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ58704.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001898; KMZ58704.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25198 MW; 2A2DC3FF38772465 CRC64; MNTDHARGKD LAGMKLLSNA AVVMEETADS KNRGTTCSSS SSSLAAVVMN YPCFNFFPLT YDAMFQPAIT DHTSFVKFLI AAEHPPAAAA RELFKKELTP SDVGKLNRLV IPKKYAVRYF PDMQCAFSSS SSSTYNNDGM MLEFHDREGK LWIFRYCYWR SSQSFVFTKG WNKFVNTKKL CSGDTVAFYK SDEKQSENMC FVIDTHYTSQ EEWVQAIWHV H // ID A0A0K9NV12_ZOSMR Unreviewed; 592 AA. AC A0A0K9NV12; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=B3 domain-containing transcription factor ABI3 {ECO:0000313|EMBL:KMZ59912.1}; GN ORFNames=ZOSMA_63G00240 {ECO:0000313|EMBL:KMZ59912.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ59912.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ59912.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ59912.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ59912.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001699; KMZ59912.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 448 550 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 448 550 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 41 64 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 592 AA; 66524 MW; 9E124655045F8A5B CRC64; MSHLGNQIAT TLQSPKYCRS RSRKQGEGRG GRTDGNMQEV MERMKVEEEG EEEEEHNKKE EERESLTTTS IELDYGNHVS SSPLSCADGV VDLTMADIDN ADLIFSDVDG FPSLPDFTNL SDPENAAILQ DERGREPGES EVGGTSGGGG SDDLAVVFFE WLKSNKETIS PEDLKNIKLK RSTIECAVRR LGGGKEGMKQ LLKLILSWVQ NHHLEQKRRL RTDAGFGTNI NYQQLPHLMI PVSPPASVPF SDEFCNWVCP IDPIVSGFNY GAGGVEMSSP VGNNEQLHAA SESIPIWPTT TRPPQFPLFP VSSGGFQTQS FFGQQYPIPT TPSFFRHNPN SESYVRFGSS ATKEARKKRM ARQRRFISLH NHRQNQNLHH HHQFHQQQQE QCSSSSLTQD SGMGVNSWPV KGLMSNIPAA PNSSQQQVMQ QIQQQQGWNS EKNLRFLLQK VLKQSDVGSL GRIVLPKKEA EIHLPELEAR DGIPITMEDI GTSRTWNMRY RFWPNNKSRM YLLENTGDFV RTNNLQEGDF IVIYSDVKCG KFMIRGVKVR NATDSKALKD TGENLKRDDD SVEVCCDENS SQIDDVSAQW SK // ID A0A0K9NWH4_ZOSMR Unreviewed; 510 AA. AC A0A0K9NWH4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_54G00300 {ECO:0000313|EMBL:KMZ61101.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ61101.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ61101.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ61101.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ61101.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001529; KMZ61101.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 510 AA; 56606 MW; B2CB6E6ED11021C8 CRC64; MTVSDLPHTH SHFIDHRLWK AIAGNVVVIP TVGSRVYYFP QGHAEHSHPV PDVSHFPLWK PWSMCRVTDV NLLANLDSDE VYYKALLLPT ISTDDRIACQ DLDEKQLQGD SLKFESFSKT LTQSDANNGG GFSVPRFCAD TILPPLDYNQ DPPVQTISAQ DVHGRNWDFR HIYRGTPRRH LLTTGWSRYV NYKRLIAGDS IVFAKNSEGS IFIGIRRGND VLRRNSRYRV TPENAMHAAG MATMEAPFEV VFYPRRSTEY VVKASMVEES MRIPWESGMR VRMPVEGDDN AGVRTSWHQG TITYVNSNNN PIISPWRMLQ VAWDEPEICH NNCVSPWQVE IVPGTHIMSP YSSSFMRFSR GGAGCNHNHN STVVSGMTMS LLNDEIPVGM QGARQNLSTC MFAIKPENDS GQSWYSSGNL SPYVSTELNI YSPPDGSSES LSPESQSSVL ESITTPKSAS AAAAASAGTG TRSFLLFGKL IQLEDPSSPT TSSACCKTCE NLTVCSCERC // ID A0A0K9NWY3_ZOSMR Unreviewed; 1130 AA. AC A0A0K9NWY3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_59G00400 {ECO:0000313|EMBL:KMZ60480.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ60480.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ60480.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ60480.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ60480.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001622; KMZ60480.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1002 1086 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1130 AA; 126826 MW; 42332D73422B684B CRC64; MKAPGNGIAP DVGDGEKKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAATMHKE TDTVPNYTSL PSKLICVLHT VTLHADAETD EVFAQMTLQP VNKYDKESLM ASNIGVKQNK QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD LHDATWTFRH VYRGQPKRHL LTTGWSVFVS TKRLLAGDSV LFIRDETSQL LLGIRRANRQ QPSLSSSVLS SESMHIGVLA AAAHAAANNS TFTIFYNPRA SPSEFVVPLA KYNKAMYTQL SLGMRFRMLF ETEESGVRRY MGTITGISDL DPIRWKNSQW RNLQIGWDES TAGERQSRVS IWEIEPVATP YYICPPPFFR PKLPKHPGDE SEPDSSFNRE LPWLGEEIGL KDAQNPLYHG LNLVQWMNMQ RSSQLMTSAS QSPYFPSMMP PTMQNNIVTD DPSKMLNFQT STLPMSSSHL NIPKTNQIQQ FDGFQQTHLS WPQQQQLLLL QQQIPVHPPQ QQIPVHPTQP QISVHLPQQY IQQASGLSQQ QLQQQQQQVA MLPQLHQKQQ QPNICTQQMV QHQQNQQQTE PLQHMRQQQH ELPMQQQSQQ QQIRPSIISP VIADQQQRQP QHFVGQSSPQ QYQSPRAQQQ IQQQSILPQN SGVHQMAHSS NHNLQTSTPQ NMQFQQQIEL QQGLSLRQQQ VTPCQPQLQF QLLQKMQQQQ MLSQMTPYVQ SQLLQQNVGV GAQQNAGVGV QQIAGVQQNP KLPQQQVNGT TLSHSQKELQ SYPNHIDWQI KSGLPITEPS SLANTDLPSC SNSPFNNNQV CSMSLLNNRN SGSAIFSEER EVQTPNNSIV QDINCKSDTR VKHEFHSTKD HDNLTYRNSM VDQLEASSSA NSFCMDRSGE ENYLLPPICL EGEVQPGPRN SIPFGSHVSE LRPDTLLSRG FDAGKDLQNL LSGYGNQKDI ETEISTAGIS SQSFGASDMP FKPGCSNDAV LNDNGVLNRG SWVTTNQPQR MRTYTKVQKR GSVGRSIDVT RYKGYDELRH DLACMFGING QLEDPHRSEW KLVYVDHEND ILLVGDDPWE EFVGCVQSIK ILSAAEVQQM SLDGDLGSLP PQQNQAGSGS DNVNLWRGNY DNNSASSFDR // ID A0A0K9NXE6_ZOSMR Unreviewed; 743 AA. AC A0A0K9NXE6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_52G00090 {ECO:0000313|EMBL:KMZ61358.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ61358.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ61358.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ61358.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ61358.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001488; KMZ61358.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 637 729 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 743 AA; 82981 MW; 9CC0E1E4135D8FD0 CRC64; MRIDLNTIDE KDAAAVALEE EEAKKHTMMS LCLCPELWHA CAGPLVSLPK KGSVVVYFPQ GHLEQICADS AAGHLRFDLP PRVFCRVVDV KLQADASTDE VYAQLSILAD NEVKNHLNHV ESPKDEQDDL PGTTNSPAIP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYIQQRPS QELIAKDLHN KEWRFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL RGLDGELRLG IRRASQFKNN MPFSVPYGRN LTPQSFVDVA NAILTKKVFD IYHNPRSSSS EFVVPYWKFL NSLNRSFSIG MRVKVPLECE DTSERRYTGL ISGICDLDSI RWPGSQWRCL IVRWDDDVDP NRQDRVSPWE IQPSSSFSGS SNLSVPGSKR AKMVITSSNP DISVNCGGRG YPDFGGSTRF HRVLQGQEIL GCRTPYDWSD PPNPHHQSDV EGMHHRFSEL ERSVPDVNNC MLGILSSRNV DRVPLGKSKF MYKSMGFDES MSRFNRVLQG QEIVSSKTSA YDGVDDGGNP VSGFFDTNSW NMRAMPRSFN ATAMQQPYYL NSNQPSFSNS NVGNGVQTVL MSDFSERQKD FSDAKTCCRL FGFPLNITAP LGNKQDLSAS SANVLKIDTN QVKPMGRNCT KVYKEGSVVG RPIDLSKLDG YDNLICEIEQ LFGMEGLLND PQNGWHVVYT DVKDGYVMVV GDDPWQEFCR IVSKIMVYAN GDKDSMTNTV TGDGGPGAGV FVH // ID A0A0K9NXZ0_ZOSMR Unreviewed; 487 AA. AC A0A0K9NXZ0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KMZ61646.1}; DE Flags: Fragment; GN ORFNames=ZOSMA_50G00660 {ECO:0000313|EMBL:KMZ61646.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ61646.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ61646.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ61646.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ61646.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001452; KMZ61646.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 406 487 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 406 487 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 487 487 {ECO:0000313|EMBL:KMZ61646.1}. SQ SEQUENCE 487 AA; 53250 MW; E4643B792EC2FBB6 CRC64; MTEPSSSSLS VVAVVGGAGG GGGGGAKICI NTFCKETTKS KKGWRLRSGE DADLCDRCFA SYEQGSFCDT FHSENDGWRK CVTCQKRVHC GCIVSVASFV LLDVGGIDCV SCAQKCCVLP VSAPNLMWSS LIYVSPESER PKEPPGKNWN QLTASSQVPG QWRPAPNAWS SSIAARSELH QRLSFEFDRP NSIEKLLSTG RSSLSEKRKV DDLHERKVSN GLNRITTDRS SNGNSGVKSP GFTVFHREDG SLDKLQESNI LMVDSDPIAT RKGIIHGSRF SSSSGVKIEK GHLQASSLKD DPTTYLASLS PPFSPSLDAN NQARGTTNKT QGQTASGPMA KQLYHNSNHN SGIDPTNETH TQMRNGRLRV DARSRNQLLP RYWPRITDQE LQQISGDSNS IIIPLFEKML SASDAGRIGR LVLPKKCAEA YFPAISQPEG LPLKVQDATG KDWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDT // ID A0A0K9P059_ZOSMR Unreviewed; 374 AA. AC A0A0K9P059; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ62451.1}; GN ORFNames=ZOSMA_461G00020 {ECO:0000313|EMBL:KMZ62451.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ62451.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ62451.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ62451.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ62451.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001354; KMZ62451.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 374 AA; 42911 MW; 29DB15EB07FDE25A CRC64; MSFITDDVLP KNGGNVLPNR PRFFKPLLHG FSEKLSIPRK FLKHGIQKKT AKLSNYIGKT WPVKIQGNVP DLYFGKGWKQ FTEDNDLHIG YFLVFCHEGD INFSVMVLDI TQCQKSYMAT QIAIDENIVN SPDYPTKSEP YKRTTTKICE PPKYTVTLQL RNLKGHYYIY VPVDFKEDTG ITRKSKLFLK DPKSELWPVE ITHSSNNRTV LTRGWKEFCL SNKLRPGDDV EFQLAPNENG NIILLVRIIR KSKRQRLEAI KSRQKCGCNI KDMTFWCTGR ILDQPYLNIP NAFVAAAGLL EKPKAATLRN KNGELFDVNL SHQTRNRIHM IGGWKSFVAS NRLKASDVCH FKLKTGSVGN SLFDVRIKKK NPRS // ID A0A0K9P134_ZOSMR Unreviewed; 356 AA. AC A0A0K9P134; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Auxin response factor 24 {ECO:0000313|EMBL:KMZ61925.1}; GN ORFNames=ZOSMA_4G02160 {ECO:0000313|EMBL:KMZ61925.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ61925.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ61925.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ61925.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ61925.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001430; KMZ61925.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 356 AA; 39478 MW; 8394A3E449087560 CRC64; MDYSGGGAGE QEEDNSTRLR STFMLTPLTH LHPSPPQHPS SSSTSSSSPT TSNRDPAALL MPSQQNVEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDAAANEKEL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFGR GVGESGRDRL FIDWKRRPES HHHHNHNLQN PPTIPRFPIQ QQHPYNSMMP WSRLYTPSSA LGGPSMSGYN PYLYLRSPVS SGPSSSSSSF AGHSNLGVQM QYPSAGNAPS TQMRTVLPIV YDSVPVRQYS ENVPPVTNSK RVRLFGVNLD CSSSAAASSS SQVRSPVLSL QLCLGDGATN VADEEDKQTM SLDLDI // ID A0A0K9P1K3_ZOSMR Unreviewed; 347 AA. AC A0A0K9P1K3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 12. DE SubName: Full=Auxin response factor 17 {ECO:0000313|EMBL:KMZ62085.1}; GN ORFNames=ZOSMA_48G00040 {ECO:0000313|EMBL:KMZ62085.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ62085.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ62085.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ62085.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ62085.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001410; KMZ62085.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 93 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 93 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 39087 MW; 6ECE2E65455A97A1 CRC64; MEEVMIGNHR RGSVDSVVLD SPESCSAEAE SRKLPSSRFK GVVPQPNGRW GAQIYEKHQR VWLGTFNEEV EAARAYDVAA QRFRGRDAVT NCKLLSDSVD ADMTELLFLN THSKTEIVDM LRKHTYQDEL QQSRRYHGSS VDRLTYGTTC TGINGFRNPL PSSSIQKESL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ ITGDVTAACK GILLNFEDVG GRVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDVVSF QRSIDPDGQL FIDWKPRFFV GAGIGSSNLC YMSFHPVQPV KPVQKVRLFG VNIFKLPDSA GSAAGEIDST DASNGKRRRE MDLFPHD // ID A0A0K9P443_ZOSMR Unreviewed; 911 AA. AC A0A0K9P443; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_39G00250 {ECO:0000313|EMBL:KMZ63754.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ63754.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ63754.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ63754.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ63754.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001212; KMZ63754.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 782 866 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 101333 MW; 5515FECA161A0F01 CRC64; MRLSSSGNSG IPPNTPEGEK RCLNSELWHA CAGPLISLPA VGSRVVYFPQ GHSEQVAAST NKEVDCHIPN YPNLPPQLVC QLHDVTMHAD VETDEVYAQM TLQPLSPQEQ KESYLPTELG ISKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEN NQLFLGIRRS NRPQTVMPSS VLSSDSMHIG LLAAAAHASA TNSRFTIFYN PRASPSEFVI PLVKFAKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG VSDLDHVRWP NSHWRSVKVG WDESTADERQ PRVSLWEIEP LTTFPMYPSS FPLRLKRPWP SGLPSLNGRE DVMMGLNSSS PLMWPRDCTD WRVQSLNFQG SGMTPPLMLP RLDPSLLGLQ PPDIYQAMAA AALQEIRGVD HSKQMMPPSI LEFQQAQQNI PGRAVSLLPG QVLQQVQSQP LSPQGSFPTI SENLGQAQSH SSLLQQQQKQ FIQQHQSQQQ QLYHQQFPPE NHHQQQLPKQ HQQNHELGQH HLSNQQMPPV VVSSLSQLVS SSQPHPTTMS AIPSYIQQQN YPDNTSSHAT TSAASASPLH SILSSFSPEE TSQLFNMQRS NPSGNNWVPK RIGVDSSSPL NSGVPCVLPQ MGSPNTNMSP FSGRECSVEQ DVGGNNNVQN NLLFGVNIDS SSLLEQNGIV NLRTDPTTMP FSAVDFLNDP QNDFPLSTTS NCLDDFPLKS PTDNIIDNVN NGTFVKVSKS GSFGRSLDIT RFSSYPELRG ELGRMFGLEG QLEDPLRSGW QLVFVDREND ILLVGDDPWQ EFVNNVWCIK ILSPTEVLHM GKQGLDPSSN PNPIRCDGFV SSRRDSRSLS TGITSVGSLD Y // ID A0A0K9P4T1_ZOSMR Unreviewed; 657 AA. AC A0A0K9P4T1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_41G00710 {ECO:0000313|EMBL:KMZ63227.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ63227.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ63227.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ63227.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ63227.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001258; KMZ63227.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 569 648 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 657 AA; 73332 MW; 47FDFA1E714CC830 CRC64; MKDSANYLDS HLWHACAGGM VQMPPVNTKV FYFPQGHAEH AHGNVDFGIA PKFPSQILCR VLAINFLADP GTDEVFAKIH LAPVKLNDFG DLNLVNDGVD IREEVQEKLA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDHSVDPPVQ TVLARDVHGE QWKFRHIYRG TPRRHLLTTG WSTFVNQKKL MAGDSIVFLR AENGELRVGI RRAKRGIAGE CCEPPSGWNT STMANCRPTP YGNLSGFLTE EDNFSKVLGS NVNNTGRGKE RITAATVIEA ANLATNGQPF EVAYYPRAST PEFCVKASTV RKSTRIQWTA GMRFKMPFET EDSSRISWFM GTISGVQFSD PIRWPQSPWR VLQVTWDEPD LLQNVKRVSP WLVELVSTLP PIHISPFSPP RKKLRHHPNF DAHHPTPTFV GKLVGPPPVN NNTSLYCLSN RTPAGIQGAR HGHFGSSFSD LHFNKLQSSP MGIIPSTGFH HYIERSGPMN RNHDYFSNSF TNTATECGSN TKIQPASFLL FGKTIRTTEI SSETPSPVGM GNSWTDDSFP NQSWMKERHQ AVEMNSPEMG HCKVFMESED VGRTLDLSVL DSYEELCLKL TDMFGLPESN RKTHVCYRNS TGAVKYAGDE PFGEFKMSAR RLMIVMDSGG ESARARW // ID A0A0K9P6M3_ZOSMR Unreviewed; 324 AA. AC A0A0K9P6M3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ63892.1}; GN ORFNames=ZOSMA_390G00060 {ECO:0000313|EMBL:KMZ63892.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ63892.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ63892.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ63892.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ63892.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001194; KMZ63892.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 36923 MW; E1C71AEEF913971F CRC64; MEGGELCRYN NGSSKFYFPE DPRDVEGRMR IRRRKRRMRM MGNGGFSKTV VGFPGGGRGK RSVRQRRLFV QPFKCFVSAI PPAPLVSSGV PPLPPPPIRR GFPFPGKTWS GVRFVLQKEL RNSDVGSLGR MVLPKKEAEL YLPGLTAREG IMINMDDMST LQEWTFKYRF WPNNRSRMYV LENTGEFVKI HGLQVGDFIM VYRDDCRDRY IIRARKAKST KEVEVAEEEE EEEVAPLPQV DDLFVAQVTQ TTTDLSGTNY TDLYLPLSDE MSSISFNMTD ADSTAFSTDF AFCFDNDIMG NNHPRVLESV PSLDSIDNLS LDDF // ID A0A0K9P713_ZOSMR Unreviewed; 658 AA. AC A0A0K9P713; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_34G00620 {ECO:0000313|EMBL:KMZ64784.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ64784.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ64784.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ64784.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ64784.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01001099; KMZ64784.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 635 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 658 AA; 73449 MW; 280BBD4E0FF7632C CRC64; MSSMAPEGPT SGQSNEMLLR ELWHACAGPL VTVPREGERV YYFPQGHMEQ LEASTQQGLE VDQQVPLFNL PSKILCSVVH VQLQAETETD EVYAQITLQP ELDQGEITSP DPPLPEPERC MVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSQQP PSQELVASDL HGNEWHFRHI FRGQPRRHLL TTGWSVFVSA KRLVAGDAFI FLRGDNGELR VGVRRLMRQL NNMPSSVISS HSMHLGVLAT ASHAVSTGTL FSVFYKPRTS RSEFIVSLNK YLEARSQKLS IGMRFKMRFE GEEDPERRFS GTITGLGDNA SSHWEGSEWR SLKVQWDEPS SISRPQRVSQ WELEPLVTSN TPTAQLVSRT KRARSPTLNS IASDLSSAFG MWKPSTDAGN PVSYSPMYRH QEPYSSHSFT PRFSPLSKAN SIAFSVNSNQ PPKSTNQMHW PILKEPHADL FSGSFNNETS EKKQDTGNGY RLFGVQLIEN TTTEETSPLV AMSGFVEDDH PVFSLNAESD RLSQPSTINR SDGLEIEAKQ TRSCTKVHMH GMAVGRAVDL TRMEGYDELL GKLEEMFNIE SELTGSVKKY TIVYTDDEGD MMLVGDDPWS EFCSMVKKIC IYTNEEAKRL SPRKKLPDIT TAMKLGCSSS KSAPSDAA // ID A0A0K9PCR4_ZOSMR Unreviewed; 703 AA. AC A0A0K9PCR4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ66848.1}; GN ORFNames=ZOSMA_287G00110 {ECO:0000313|EMBL:KMZ66848.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ66848.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ66848.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ66848.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ66848.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000955; KMZ66848.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 87 104 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 56 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 301 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 316 416 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 489 560 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 600 702 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 301 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 316 416 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 489 560 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 600 702 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 82143 MW; 77C4C3C53F57D06F CRC64; MVNVEEENLM FFKVLLGDFK DKLYLSGKFA ALPKKWPELK LKTALGDETK KKKKKRVWSV DIRNSDGMFY LTGDGWRRFI DDHDLRFGYF LIFIYCSDVT FYVIPFDLSG FRIAYNGVNK PIGIENNADM DVDEDDVKSK IRVTDNDNRL KLQKIRKQNM KVKNKPQFKK IRRPTRCFEM EKWKKTNEGT RLKDGKNHLL KCTLRQSSIQ KGILNLSTRF CQENNLLSVN QAVLTTEIGS WTVKICHCPR KYSFGRSTSS FFSAGITSFF RENNLKTRDV CIFELLSVDE NRANFCVTKE DGDTLMMAAK EKNTVENRPQ FKIILRPVNR LNFPTSFRNS NDLSRIDEVT LLTKESIGRH HWPVRFRHYL TENRSSFTFG WTTFKRESGF KEGDVCIFEL FSKKGNTATF LVSKEDDFSR EKDTGSRLIR PHFEATEEVE FYRKNDTGSP LIPSHFDVTI KRRYLCSSRF EVHVPVKFGL HHLINKSSIT LKRNGKSWEV RVVGRTNGTK TNTVYRKLTT GWKRFCFDNE LKEGDVCSLK LVSIEAAKNL EMVVDIKRKY PILRRNNAYM EPESSFNRPH FQSTITNTHI FGKISELNVF SCSVSSYLLF FGILQHIPVS FNAVYYLHNK SMVTLTNSVN DSWEVTVTRR LRNGYMSVYY RFSNGWKEFC IENRLENGDI CTFELVSEQN AAKIEMRVTF HKK // ID A0A0K9PCZ1_ZOSMR Unreviewed; 330 AA. AC A0A0K9PCZ1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ66849.1}; GN ORFNames=ZOSMA_287G00120 {ECO:0000313|EMBL:KMZ66849.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ66849.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ66849.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ66849.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ66849.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000955; KMZ66849.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 38083 MW; 94436F696F8668CB CRC64; MVNVKEESFV FFKVLLGDFK KKLILSEKFA ALSGKWPELK LSTALGDNND GDKNKKVWRV EIQYFGGTFN LTGDGWRSFV KDHDLRFGYF LVFLHCSDVN FYVVPFDLTG FRIAYAQITT INHLKSKEIM DVDDYDDKLK KQKIEKNPNL AGTPEMEQNK NKMVNEDHLK VANRPQFKII VQPTYIERSE IHFPNLFRVA NNLAKTTEAN LTTAIGSWTV KFRHTHNRKR MIKRSAFSLG TFDFLRANNL KQGDVCIFEL LSKDENRASF LVTKEDNALE KRSLREVANV GVATSTRSDT QASRRFTSTD QVPIQTYQRR NRQINGCNTT // ID A0A0K9PD48_ZOSMR Unreviewed; 226 AA. AC A0A0K9PD48; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KMZ66993.1}; GN ORFNames=ZOSMA_27G00400 {ECO:0000313|EMBL:KMZ66993.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ66993.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ66993.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ66993.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ66993.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000932; KMZ66993.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 226 AA; 26470 MW; BD8FC7B3907644C5 CRC64; MADYEKLRQK KLEENKRKID ELKLNQLSVS LTRSVLKPSP NKQFKRRLVN QRPKLVSLRR SNRLANLTEP VTYKEDPLYY FLENPRRRMR SGTSTRKDLL KRVYASNESR ALTENMAIKF MEEKESIFPS FVKPMTQSHV TGGFWLSLPK SFSSTYLPKS NEYLTLIDED GNEFQSLYLA PKNGLSGGWR GFSMEHDLVD GDALIFELIN PKTFKIYIIR VRDYSK // ID A0A0K9PDM4_ZOSMR Unreviewed; 877 AA. AC A0A0K9PDM4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:KMZ67138.1}; GN ORFNames=ZOSMA_278G00240 {ECO:0000313|EMBL:KMZ67138.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ67138.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ67138.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ67138.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ67138.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000930; KMZ67138.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 401 502 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 630 680 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 401 502 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 877 AA; 97233 MW; 69F893D0383D0CA2 CRC64; MTSPPISAAV TDLVAGVGSG GGRICFNTHC KEPKSEGFST RRKGWRLRSG ELADLCDCCS NSYEQGTFCE TFHLDEDGWK KCASCAKRVH CGCIVSATSF ALLDAGGVEC ISCAQKNFLL GSNQMWSSPN FLSSERLKEL PSKSWSQLSA STAVPGQWRQ APSAWRSAVS SQSEIHQRLS FEFDRPSNRP LVSEKRKVDD LHERPVPTVP NRITIDRHAS GSTGPKPSGF STFHRDDVIV NADRLQESSL LVGDSDHMPT RKGVIQSSRL SSSVGIKIEK VPNACSIAPH RPPLSKDGSK SPVIGLTTPL LPSLEPNDQI RVSTNHLHNK TSSSSMTKQL YPNLNSTNDS INESQAQLRN GRTRVDSRTR NHLLPRYWPR ITDQELQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPSI YQPEGLPLKV QDSTGKEWIF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DIVTFSRIDP DGKLVMGFRK ASNTQNEQAP KSGNGFSSTS EIGNGNNKQD RTILSKNDKV EFIKKERPVS KGQLVPSKRK NSTVVSKSKR LLIENEESIE LKLTWEEAQD LLRPAPNHVP SIVVIEGHEF EEYEEAPVLG KPTIFTTNED GGKDQWAQCE DCLKWRKLPL DAPLAPRWTC LDNIWDPDRS SCLSAQEISK GLAADFVPFN NANSKKRQVK VESVEGSEGL DTLANLAIMS ESESVPQSSQ ATTKHPRHRP GCSCIVCIQP PSGKGSKHKQ SCACNVCLTV KRRFHTLMLR KEKRLSEKEA ETSRKKHLKQ QNVSPETSSQ QESDKGGVGE QNMDNNSTPN DAEGEEEEDS DTKKEVMLSQ MKTEIDLNMQ PEKEEENNNN TSVIPTS // ID A0A0K9PF54_ZOSMR Unreviewed; 919 AA. AC A0A0K9PF54; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ66850.1}; GN ORFNames=ZOSMA_287G00130 {ECO:0000313|EMBL:KMZ66850.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ66850.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ66850.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ66850.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ66850.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000955; KMZ66850.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 471 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 640 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 685 782 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 818 914 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 370 471 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 542 640 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 685 782 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 818 914 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 919 AA; 107046 MW; D365F43BDF7D7D0F CRC64; MVDIEEESFV FFKILLDDFK NKLILSEKVA AMSEKWSELK LRTALGDMKK KVWEVEIRDS DGMFYLAGDE WRGFVDDHDF QFGYFLVFFY CSDVTFYVVP FDLSGYRIAY DRPIIDYGHA LVLVDDDDED DDDGSKVVVA QKPTGNEKKR RNLKLQNKPR FKFDLQSSYH QFDTIAGRIK MMKKMTVKKP QFEITIQPSY ISKRLLNFPS LFCVANDLIS INEVQISTNI GSWTVKFYHS QLKKGGIQNF LSTGLISFFR ENNLKQGDVC IFKLLSKHED RANFYVTKEG SKEVEFSRKE DSSNVSRRNI SRKRDDDHIL KMDKKKNTVE NNLKIQKRAQ FKINIKPTNG GNDRLKEQKM TKKMILLKPQ FKIIIQPSYV KKGIMYFPNH FRDANDLQSI NEVHLSTTIG SWTVNFCHSR MKSGGLQSFF SAGWASFRSE NNLKQGDVCI FDLSSKQKNI ANFYVEVSRS GNNSNVFERN IRRKLDDDGN QMCEKKNTAE KNLKVQKRPQ FKKNIKSTNG GDDDGRMRVQ KMRKEMIVKK PQFEIIIQPS YISRKKMNFP IAFRDENGLR NTDEANLTTT IGRWTVRFCH YPSSNGIRSF FAAGWPSFCK ENNIKSGDVC IFKLLSKLDN IANFVVTKQV KFSRMEDNST VPKRNLARKI RNGGEITFDD KPKMDIKIKH KSQKNPRFKI HMQTSYSRYM HFPSEFRDSY DLSGIDEVIL NRKGRLWLVS FRHYKRTYNL RSFFTLGWET FKRENNLKTG DVCTFELLLK KANKAIFLVK KKVIFSRKED NSSDVQSRNA NQPNYATGSR SLASRPHFEV KLKNSHFVKT NCMHIPVSFG TYFRGRSKVI LTNSLSESWE VGISEEKRGT CVYHRLSKGW KEFCHDNKLE KDDVCSFELI SEEGAEKLEL IVTFAIHIS // ID A0A0K9PFF6_ZOSMR Unreviewed; 249 AA. AC A0A0K9PFF6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=B3 domain-containing transcription factor ABI3 {ECO:0000313|EMBL:KMZ66987.1}; GN ORFNames=ZOSMA_27G00340 {ECO:0000313|EMBL:KMZ66987.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ66987.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ66987.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ66987.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ66987.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000932; KMZ66987.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 28998 MW; 85BAD7703F15C9C5 CRC64; MDGEDGSSSF PFPQIGFHGE IRRRKRSARQ RRVFQTNSEE FPRSESKLVY PFRFLLQKEL RNSDVGSLGR MILPKKEAEA HLPALTAREG MMLCMDDMET LQPWTFKYRF WPNNRSRMYV LENTGDFVKA HRLQLGDFIM LYKDDCRDRY IIHGRKIGAP VAAAAADEEE ATEEEEATRP LEAAETEETA SFCRDMYHPW AGYDDNMQHD AAYSLDFSFF FSNDIIDNRR VLKSFPSLDS IENLSLDDF // ID A0A0K9PFI0_ZOSMR Unreviewed; 859 AA. AC A0A0K9PFI0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_27G00270 {ECO:0000313|EMBL:KMZ66980.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ66980.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ66980.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ66980.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ66980.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000932; KMZ66980.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 733 826 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 859 AA; 96004 MW; 60A4F15E2B0CFB2C CRC64; MTPTSGASQK GNYADGRGES FSSGSSEMND GVKNTVVSDV NRGLSDACPP PVSGKDFDSA FYDELWHACA GPLVTVPKQG EKVYYFPQGH IEQVEASTNQ VANQQMPMYN LQPKILCRVM NVVLKAEPDT DEVFAQITLL PEEDDNTGEK EPPPVVHPRT RVRSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMGKQP PTQELVAKDL HGVEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMKHQ ANVPSSVISS HNMHLGVLAT AWHAVSTGTM FIVYYKPRTS PSEFIVPYDQ YMESLKNNHS IGMRFKMRFE GEEAPEQRFT GTIVGISDAD SGRWSGSKWR SLKVRWDENS SISRPERVSP WKIEPASTPP LNPVPAPRNK RARANHVFPL SNSSSFVTTR DGTKTFVDSH MHEISKVLQG QETKSLHSVF AHDVESEISQ RPTSWIGESK NDGNCQSRLG KTSWKSGARN EPMYSNMLTG FNVSGDTQGL SSVLRRTHED NGPSKNHHQE QDGKFTLLSK PWLMQSNVLD VDRRWESSNQ INVLPNQKID SSRYGGHGYL SLQSYGIDHS TNWSSPKLPP NHIIEGPIKP ILRRPQPCIL KKSELPKVKG SGNCRIFGFQ LNSNPEILDL ETTHINAAHV SDSHSHPASI HQGSGFEIDQ HTDECKGNNS TDSDLVRKEQ VHRLQSSTPT SKDASKPCHG SARSCTKVHK QGIALGRSVD LTKFIDYDQL IDELDLMFDF KGELKPPNKN WVIVYRDNEN DMMLVGDDPW QEFCCIVRKI CIYTPEEVQR MNPGTLSPKI EDGEADISEE RNTATNGTWE SSPSPMADS // ID A0A0K9PGC7_ZOSMR Unreviewed; 257 AA. AC A0A0K9PGC7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ68034.1}; GN ORFNames=ZOSMA_24G00550 {ECO:0000313|EMBL:KMZ68034.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ68034.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ68034.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ68034.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ68034.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000864; KMZ68034.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 29011 MW; 4A00FAF2C0B964EA CRC64; MTAFRNTTEM TEEGSNSNRR TPTVVPVCQV GSSMYRYGSC DGTKFKDYIL PTRYCMIFGN GTYGNAGDGH EGVIFPRELF RKELTPSDVG KLNRLVIPKK YAVQYLPPIL RPEKTTGGEG DGSEGMMLEF KDRHGRVWEF RYCYWKSSHS FVFTKGWNKF VKANELTTDD TVLFYRCEEY CAAGEDRLKA NIAIKDYYFM IDVKRTCQED GDGVFREVPE TAVEIGPVAE GGGGRDGNKD VKNGFKLFGV HIAPINI // ID A0A0K9PGD7_ZOSMR Unreviewed; 686 AA. AC A0A0K9PGD7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_24G01260 {ECO:0000313|EMBL:KMZ68103.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ68103.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ68103.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ68103.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ68103.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000864; KMZ68103.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 573 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 76695 MW; 4B84BF527FDE74BF CRC64; MANGSENGDG GDELYQELWK ACAGPLVEMP FVGQKVFYFP QGHMEQLEAS TNQDSDQQIP SFSLPSKIPC RVLDTHLRAE RETDEVYAQI TLLPLPENEL LTTEPNSSEA SRSKKVHSFC KILTASDTST HGGFSVLRRH ASDCLPPLDM TQQTPTQELI AKDLHGYEWR FKHIYRGQPR RHLLTTGWST FVTSKRLVAG DAFVFMRGEN GELRVGVRRL ACQKSVMPSS VISSQSMHLG VLATASHAFM THTFFTVYYK PRTSQFIIDV NKLFDTVKNG FSVGMRFKMR FEGDDTPERR CTGTITGVGD ASTQWVNSDW RSLKVQWDEA TSMQRPERVS PWEIESVDPS TITVAQKPSL TKAKRTRTST CLPISESSSQ FWHPGSILTQ PNNSGGGAVS TEARNCKAQV SAVWSSNPAN DKSNALVFDD GFLNEQRHGQ LSSSTADTSL KLFQGFGREI ETQSFTPWPS FTGSAAENSQ LSNTGIGLEV CKKFENSGGS GLRLFGFELM ADTPISMEEK LVHATAIATG MMDTNNKQIA FTKQSSSELK PRTQHQIYPN EILSKQSCCS STRSRTKVHM QGIVVGRAVD LTILESYEEL ITELEKMFDI KEGELQHRNK WELVYTDDED DMMLVGDDPW LEFCKMVRKI FIYTCDEVKK MKPRSKLHQT ECKVDGDCAT VPASSS // ID A0A0K9PGM5_ZOSMR Unreviewed; 411 AA. AC A0A0K9PGM5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_24G01320 {ECO:0000313|EMBL:KMZ68109.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ68109.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ68109.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ68109.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ68109.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000864; KMZ68109.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 46148 MW; 9097F0325B6C6309 CRC64; MEIDLNTMEE EEEEGDREVG VAVCLELWHA CAGPMVWLPR KGNSVVYLPQ GHLELSGASA VGGDFRFDLP AHVFCRVVGV QLLAETATDQ VFARLSLVPH DQHEEGDTAE TEEFVTAGFK SSTSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKLQRPSQEL IAKDLHGMEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGV DGELRLGIRR AGQLKDANFN CSLYGETFNP GTFATISNTV RTSGVFHINY NPRATSSEFL VPKWKFLKSI RHSFSSGMRF KTQLDSEDTS ERRSTGVITG IDDLDPVRWP SSKWRCLTVS DGMMGQTAIG IIGSLHGKLS LMQVQITCPH QFQRETRSVL QQSWMLQFLT EERQALRNLQ ATTRSCKVKK F // ID A0A0K9PGY8_ZOSMR Unreviewed; 497 AA. AC A0A0K9PGY8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ68239.1}; GN ORFNames=ZOSMA_246G00310 {ECO:0000313|EMBL:KMZ68239.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ68239.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ68239.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ68239.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ68239.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000857; KMZ68239.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 266 365 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 388 490 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 266 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 388 490 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 497 AA; 57312 MW; BAD1CA18295AC745 CRC64; MSDMTGTRFN SHTKPMFFCI LKPDFLSKMD IPPAFIWNLI PEKIAKVWDS LGHSWLFKIR GTHPNFYFDE GWKKFAKTFN LEVGYMLLFC YEGNMNFSVI IFGNNSCLKE YALEFIDKSK KNTIERLYTR DDLDKSIDHK KIKLEAPNPS SLTEIHNAQF QQGCGNQRLE HLVKMPEKFI ATTIVADNGS AFSLTLDSSS RTKEEQRHEH ACLPLKIPLC NHTDTDGTVL NTVQPYDHDD EQQAAQASNT INDGSMICAE NAPPSYRITL MPSHLQGRYY LYIPVRFREQ TGISDEHTLF LKDPNNNLWE TQLSHSTKNR LLVSRGWKEF CLNNKLKLGD DCEFKFCSEL KDNKKILQVE IFKKPQRERL KAIKIKKTCG TNLSSTPSFW ITVTSYCLVQ NNIAIPNAFV TATDLLHKNT VELKDDTDGY ICPVDLRHST RNRVIFGNSS WKKFCSRYNF KEGDILAFQF ESKSGSNGID TFHFRILQEP PLQDEIE // ID A0A0K9PHG1_ZOSMR Unreviewed; 473 AA. AC A0A0K9PHG1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ67642.1}; GN ORFNames=ZOSMA_25G00280 {ECO:0000313|EMBL:KMZ67642.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ67642.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ67642.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ67642.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ67642.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000889; KMZ67642.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR CDD; cd00162; RING; 1. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001841; Znf_RING. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS50089; ZF_RING_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}. FT DOMAIN 65 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 426 461 RING-type. {ECO:0000259|PROSITE:PS50089}. FT DNA_BIND 65 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 473 AA; 53877 MW; C6BDFA74D979461C CRC64; MQTKPCGVQK GKMALNPKEA TLDKQTMKRK RILDNRVYAS EEARIYAIER AREIQTGLDS KYPSFIKSMS QSHVTGGFWL GLPSHFCVKY LPDEDTRFSL IDENFKESTS LFLPNRSGLS AGWRGFSIEH GLVDGDAVVF HLIKQTTFKV YIVRSGDLVS CITETKKTPT LPKKEDQHLK TVKKASSPLE STQKEKNDSS CPSSIPLKYA NYERINSDKI SFHEDQINNS DSDKSLLNQP NHPSKLKKEM EKKAKGFQSK LDEAFPSFIK LMQHPKDVKS WLELPHSFCK ENLPKENTKM ILIDDTSNSF KTVFIFSTTG EGLLTLGWQE FCAFHGLIED DALIFHLVNS TTFKVHILRA KDDFSSTAPN DNKIKSEIEE PTIIGHLSSS DKNYSCDIYM KLEEELKQKT MEVERTTELF HSFKSCKVCM EREMAMLLLP CMHLCLCKNC EPRFNICPIC NTGKVSSVQV FLS // ID A0A0K9PKH2_ZOSMR Unreviewed; 287 AA. AC A0A0K9PKH2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 12. DE SubName: Full=Auxin response factor 17 {ECO:0000313|EMBL:KMZ69459.1}; GN ORFNames=ZOSMA_214G00470 {ECO:0000313|EMBL:KMZ69459.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ69459.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ69459.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ69459.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ69459.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000769; KMZ69459.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 60 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 126 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 60 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 126 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 32501 MW; 896DFE388402A146 CRC64; MASSQYKGVV AQPNGRWGAQ IYEKNHRVWL GTFTEQVDAA KAYDIAAQRF RGGDAVINFS PLTDTAEMVF LNSHSKPEIV DMLQKHTYDD EFQQNQRAMT SHLTNPSSFL NGRPIDHQPP VQLLMFEKVL TPSDVGKLNR LVIPKQYAEK HFLLKPLLSA GDNTAPASSS KGTLLNMKDS SGKAWRFRYS YRYSSQSYVL TKGWSRFVKD KNLNAGDAVG FYQSGTGLDR KLYIDWKTGN FQGAEITRNG DDQYFPYPYP LLPDVPIPNR PVQVMRLFGV NIFKTTN // ID A0A0K9PL86_ZOSMR Unreviewed; 413 AA. AC A0A0K9PL86; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ69005.1}; GN ORFNames=ZOSMA_223G00020 {ECO:0000313|EMBL:KMZ69005.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ69005.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ69005.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ69005.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ69005.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000794; KMZ69005.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 310 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 310 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 48149 MW; 9A857224843087F3 CRC64; MVDVEKQNFV FFKVLLGDFK HKLRMSEKFV ALPEKYPELK LSTALGGKQK VWSVEIGKDP DGMFHLTGDG WRCFVEDHDL RLGYFLVFIY SSDVSFYVIP FDLSEFRIAY KPIQVQDTTT TPTTIDDSEP VVVVIDDDHD EDITLKDVED YHDKQKLPQN LHESRKKNTN FRGKLGMEKM VNVSSRPQFK MIVHPSYIKK KKMHIPKEFC DTNHLVDTKE ANLTTINGTW TVRFYHRTSN SRNVRSLFSS GSHDFLQANN LKQGDTCIFE LLSNDEKRAN FLVTKHIKCS RDEFRRNLNR NKFIVRSHFQ AIITKNQLFG KFSAMHIPVS FSRGLYLRDK SKATLTNSLN KSWEVAIITK RSIYKGTIYY SFSKGWKEFC YDNRLEEGDV CSFEPISEKG AAKLEMRVTF RKN // ID A0A0K9PLA9_ZOSMR Unreviewed; 285 AA. AC A0A0K9PLA9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ69848.1}; GN ORFNames=ZOSMA_205G00240 {ECO:0000313|EMBL:KMZ69848.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ69848.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ69848.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ69848.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ69848.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000744; KMZ69848.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 149 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 149 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 33438 MW; 71287A1B2D9A3F36 CRC64; MVVGAREVID REFFKVLLDG FDEKLRIPDK FVEECLPRGQ EKVNLNSSIL GKVWTVKIRC HSDGFYFSGD GWKEFVRDHD LHFGYFLVFV YCWENINNFF VKPFDHSGCR KFYAPIDQED KTMNQHAAVN VEQCVNKATA IDDDQNQIQN QFKIVMASSY IQYMHFPSGF RDSNNLSSIS EVTLTGKDGR RWLVKFRHTP RKNRLSSAFS IGWKAFKNEN NLQKDDVCIF YLSSKDENTA NFFVIFQQKR RKQDNSKVVG RKKNRKARNQ SESIKKKPIL QTVQR // ID A0A0K9PLV8_ZOSMR Unreviewed; 682 AA. AC A0A0K9PLV8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_202G00360 {ECO:0000313|EMBL:KMZ69949.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ69949.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ69949.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ69949.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ69949.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000736; KMZ69949.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 602 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 76133 MW; F03BE6D8F4203E0A CRC64; MKHQQQQPEK QVLDARLWHA CAGGLVQIPP VNSRVCYFPQ GHAEHALGNV DFGMGTRIPA LVLCKVTNIN YMADPNTDEV FVKIRLLPVK SNGLDFDDNN NEEEGEENNG GVEDLLPEKL SSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSVDPPV QTVLARDVHG EQWKFRHIYR GTPRRHLLTT GWSTFVNQKK LMAGDSIVFL RAENDELRVG IRRAKREIGE ESSDAALSRW NIPTTGNTTY IPFHQYGRFS VFTREEESSL TRKNSVEDVN HVRGRVRVRI RAESVVEVAN LAATGQPFDI VYYPRTSTPE FCVKVSAVKA ANRIQWTPGM RFKMAFETED SSRISWFMGT ISGVQFADPI RWPHSPWRIL VVAWDEPDIL QNVKRVNPWL VELISNLPPI PLSPFSPPRK KLRVPQPFPD LSFARQQQQF PPPVFAGNYN NPLGSCSNPP AGIQGARHTR FGISLSDLHS SSIFTRQFVN STPRISTGGL VIGNHNFRHR RSGPDNVSCL LTMGNSNWSP EKNGKSSPSP PSSSSSFLLF GKTIQTEKQI SSGNYGEFSP VGNRNSWSDC TCPPASLLKD HHEFSELSLG NSGMCKVFME SENMGRSLDV SVLDSYDELR AKLAEMFGSD TKAQLLYRDS TGAVRVAGEE PLIEFKKSAR RVTILMDSGT GV // ID A0A0K9PLZ7_ZOSMR Unreviewed; 264 AA. AC A0A0K9PLZ7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Auxin response factor 12 {ECO:0000313|EMBL:KMZ69237.1}; GN ORFNames=ZOSMA_21G00910 {ECO:0000313|EMBL:KMZ69237.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ69237.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ69237.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ69237.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ69237.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000785; KMZ69237.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 264 AA; 29369 MW; 059AC2D792DB7968 CRC64; MEFAATQDMR SMEHMFNKIV TPSDVGKLKW LVIPKQLAEK YLPVVSSKND KGLLLNFQDR NGKPWIFRYS YWNSSQTYVM TKGWIRFVKE KQLSAGDTVS FGRGVGGQAA RDLLYIDWNR GPETRTTTPT SRQLQTTYIN SMPVLEPWND HLRQIQTPHR PYNVNNGCGY GYSNTNSFLY FASSVAGASP THSNLGTGVR EDAIVFESAP SSKNITKFVR LFGVNLDCPS SSSSSSSTPA VSLQLSLGDS GTSTSGAWYD RSNT // ID A0A0K9PMZ9_ZOSMR Unreviewed; 453 AA. AC A0A0K9PMZ9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ70448.1}; GN ORFNames=ZOSMA_19G00300 {ECO:0000313|EMBL:KMZ70448.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ70448.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ70448.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ70448.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ70448.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000728; KMZ70448.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 336 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 453 AA; 50925 MW; CB03539975F18316 CRC64; MEKGGEGEFH RFSHFLNTFP HLKGSFSTVP TTTSPDWPPP LPSPSPSRGV FLNDKTTITN VDHSFRSLED VGGVHQTNGD GLTNTFLSNF QSQSGGAYDP SGSEQVRNPY TLQSFFSENV RSSGTVPGRS VDMANGGRKQ SCINESDFFS LKEPNSPGFP IKTPENGNLL VGGSHQKIST TSSSSLELFH GEESNEIHNI NRQLNTTWFQ TYDYDCNYNC NCNYNFNYNS SVVSEDTPMI LPTRKKKFVP VQQNHVRSGW NFIPYGVNTT NLSQIVMDPV LHFWQQRVLE TSQIYQKNSP SPSPSTSGGN QILSSTSVCI DTDDKELERR GLSIVLKKEL RRSDVSSLGR IVLPKKQAEG YLPYLTQKEG IQLQMRDFTY SGVWTFKYRY WPNNKSRMYI MENTGDFVRI HGLKTGDFFA VYLEHCSGTF IVRGMKHDGG AERSQSQGNE NVQ // ID A0A0K9PNP1_ZOSMR Unreviewed; 104 AA. AC A0A0K9PNP1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ69847.1}; GN ORFNames=ZOSMA_205G00230 {ECO:0000313|EMBL:KMZ69847.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ69847.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ69847.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ69847.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ69847.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000744; KMZ69847.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 104 AA; 11772 MW; 1033F988A1FF146A CRC64; MVTLKRYNLL IKSMSYLNIP GSANLTGIIS EPQNIMLKDA KGRAGMARIY QNGNLKNQFR VRGKGWLQMV KDNTLKNGDV CKFKFIVSKT KDHVLCLLSK NNLI // ID A0A0K9PRR6_ZOSMR Unreviewed; 334 AA. AC A0A0K9PRR6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 12. DE SubName: Full=Auxin response factor 17 {ECO:0000313|EMBL:KMZ71661.1}; GN ORFNames=ZOSMA_178G00500 {ECO:0000313|EMBL:KMZ71661.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ71661.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ71661.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ71661.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ71661.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000667; KMZ71661.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 88 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 159 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 88 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 159 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 38155 MW; 7177D0F16D79202A CRC64; MSDSTTGAGR DGGRSTTVVQ VQGGEIRKLP SSQYKGVVPQ PNGRWGSQIY EKHHRVWLGT FNDEVDAAKA YDIAATRFRG RDVVVNFGQL STAEDDDYNM ELVFLNSHSK TEIVDMLRRH TYYDELQQSR RREVGNSTTM VFGHRYSLQQ PPQARQLLFE KAVTPSDVGK LNRLVIPKHH AEKHFPIKTA DKGLLLNFED TGGKVWRFRY SYWNSSQCYV LTKGWSRFVK EKNLNAGDLV GFYRSVGSDD KLYVDWKHKN TSTSGYYPYV VLPMPLPVPV PPPPVQVMRL FGVNIVKEPN TTTIDVAVGN DWDEKRRRDI EAQFLYKKQC IGSL // ID A0A0K9PT29_ZOSMR Unreviewed; 301 AA. AC A0A0K9PT29; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ71400.1}; GN ORFNames=ZOSMA_181G00350 {ECO:0000313|EMBL:KMZ71400.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ71400.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ71400.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ71400.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ71400.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000676; KMZ71400.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 180 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 180 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 93 135 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 301 AA; 35054 MW; E043484495E2F1BE CRC64; MDKSTTSNNP PDPLDCNTFL PPPVPQPFAN IDGFGADHTI YQHQRQYQVE QPNVYLYPNI SMENVAGVDP QYYYNNSNIS NNGVMWPLNN RILDESRTRM QQQEQQRQEH QLEQLQRQIE KLQKLQKEQD QLHSSGTSYH ALFPMTQPNS SIGITLQFSP YTQDFSLFPS LVHLGYKFLF QKELKNSDVS NLGRIILPKR ESEGNLPYLM VKDGIYLNIK ELFNTTVWRM KYRFWPNNKS RMYVLENTGE FVKVNELKSG DFISFYQDIN SQLYICCRNV DKLLQETRSV PTANAGNRSS S // ID A0A0K9PVQ3_ZOSMR Unreviewed; 242 AA. AC A0A0K9PVQ3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=B3 domain-containing transcription factor NGA1 {ECO:0000313|EMBL:KMZ72327.1}; GN ORFNames=ZOSMA_166G00220 {ECO:0000313|EMBL:KMZ72327.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ72327.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ72327.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ72327.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ72327.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000636; KMZ72327.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 242 AA; 28298 MW; 21B17DFBDC119D9D CRC64; MENAMAGEDT RWGNWEREHL FEKLLTPSDV GKLNRLVIPK QHAERHFPLD AESGEKGLLL NFEDEGGKSW RFRYSYWTSS QSYVLTKGWS RYVKEKQLDA GDVVLFDKRK RRRGDRSDFD GYGDGDGDRL YIGWKRREIQ IPNAEHVVMW NTTLYGVDPL LQNYQHHHHH PRRLLPPSTP VAGTMRRESQ FYAIEEQRGS SIHQSTTSTW KKQLRLFGVN LECEMSSATV DDPRELQLLP HS // ID A0A0K9PWQ8_ZOSMR Unreviewed; 813 AA. AC A0A0K9PWQ8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ72657.1}; GN ORFNames=ZOSMA_160G00330 {ECO:0000313|EMBL:KMZ72657.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ72657.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ72657.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ72657.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ72657.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000621; KMZ72657.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 180 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 315 413 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 445 545 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 579 678 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 712 810 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 315 413 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 445 545 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 579 678 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 712 810 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 813 AA; 94778 MW; 03DA503C3E3134FF CRC64; MVDFTGNFFR VLLDNFTEEL RLPIKVTIGG RKWEKMKLVS ALGGEKKVWY VDVKKDDKDS GVLYLTGDGW SSFVKDHDLR FGYFLVFNYS AQMNYKVIPY DLSTFEKPYQ QSVHDDTHQC LKRKWKSSQE ATDDNRLKKK KKAVIFPPRF PANSEKNEEE NNIEKMKNVG GNFGVSKPRF KITMTYSYVR RATGMVLPAR FRDANNLSSV NEAILTTTNG RSWTVKICHR RIRDGKKKNS YFSVGWSIFL RENNLKEGDV YVFELLSKSR DRVDFSVTKK LEFSRKTVPG RTQSPRMTND GNRAYFDVKM VEKPQFEITM TDSYIRRSLM HFPAGFGDAN NFSTVNEAIL TATNGCSWTL KNCYSRIGNK INNYLSVGRS VFLRENNLKE GDVYVFDRAN FSFTKQLEFF RKTAPRRTYS PRMTNGFSMD GNESYFDVKM ADKPWFEITM TGSYIQRPIM HFPAEFRNAN NLSSVNEAIL TATNGRRWMV KIHHRRLANK IIISSFSAGW PVFVRENNLK EGDVYVFELS SRNENQAVFS VTKQLEFSRK VVPRRMHSPR MTNSRGFSTD ENRAMVEKPQ FEIKMTSTYI KRLMHFPVAF RNKNNLSAVN EVTLVNANGC WKVKLCHIPK GNQILTSFFS AGWPVFVREN NLKEGDVYVF ELSSRNENQA VFSVTKQLEF FRKAVPRRMH SPRMTNRRRF STDENRAMVE KPQFKISIAP YIHMNFMYFP SRFCDANNLS SIDQAILTYN NVNWPVKICH TPQRDRYIFS TLSTGWISFV RENNLEVDIY NFELSSTDET RAYFIVTKEV DLC // ID A0A0K9PWV3_ZOSMR Unreviewed; 366 AA. AC A0A0K9PWV3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Auxin response factor 24 {ECO:0000313|EMBL:KMZ72670.1}; GN ORFNames=ZOSMA_15G00060 {ECO:0000313|EMBL:KMZ72670.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ72670.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ72670.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ72670.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ72670.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000620; KMZ72670.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 83 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 40882 MW; 8005149741D498F0 CRC64; MAFAYYSEGK DDEDNSSRRR LSSFTHTSHT PALSHLLPPS SSSTCSSSPT AISRNVSQAD ANDDQPGSSS GADPQPIPKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSKNEKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFGR GVGEAVRDRL FIDWKRKPEI PNRPDFSHLP MQNPYIPMMS FAHSVMPWNH SHTQPIPPYN VYMRSPQPYS HYSHPQHSRL GVQMQYSDND TNAADNGGGD TYAARRSAVL DFDSVPVGHS SLSSTNSKHV RLFGVNLDCS PSSSYIDPCA PLTTSQVRPL LSPPLSLQLG LSNSTADVVD QSPRKDKQPM SLDFDI // ID A0A0K9PX58_ZOSMR Unreviewed; 904 AA. AC A0A0K9PX58; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Putative Transcription factor {ECO:0000313|EMBL:KMZ73524.1}; GN ORFNames=ZOSMA_147G00360 {ECO:0000313|EMBL:KMZ73524.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ73524.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ73524.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ73524.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ73524.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000574; KMZ73524.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 380 481 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 629 679 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 380 481 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 904 AA; 100261 MW; FE8707C3A1B2144A CRC64; MEEIDSGGNK CMNVVCGLQL PDGQWNKGWM LRSGSFAALC NSCGMAYDKM VFCDIYHSLE TGWRECHSCS KRLHCGCIVS KSSMELLDSG GVQCTNCVNF KQTPKLHGQC LQSSIHTALP VPNHQQIMHT SEPSPISADF LQQWVSTSPT KVVISVPLES NASLRQRDSC DGNMYNGTNG KIKCVSRNTE VNRQSRSNNS HGHTKREPSM PSVGDCGTLG ISSTNQALNV PSDISRIDET KYDSTDNVTS EAQPHASLVM TLGTSIQHNH QSMDSFCNSG NSNNPLPASN TVVDEREHNN LLPTISQIQR SRHLISKPSK TCHSPSLDTS NDMLSHMRVA RPPGDGRGRS QLLPRYWPRI TDEELQQMTG DSNSTIVPLF EKILSASDAG RIGRLVLPKA CAEAYFPPIS HPEGVPLKIQ DVKGNNWVFQ FRFWPNNNSR MYVLEGVTPW IQSWQLQAGD TVTFSRMEPM GKLIMGFRKA TSSVQMQDSQ ISAMTNGTDF NENCVNTENL PIISGYPGPH QSLKVSIASQ LCNFSEADGD KSSYKVNKRA SSIEQLQKKG SHIGSKSKRL HIDHGDALEL KLTWEEAQDL LRPPLSEKPS IVVIENHEFE EYEEPPVLGK RTIFTSQTSG VYDQWAQCDS CYKWRRLPAD VLLASKWTCA ENLWDSQRSS CDISSEMKKK DIQNLLQMNK DLRKRNIGAK LKVSTEEEAS SGLDALASIA TFGDDTTILL PPSTAKTTKH PRHRAGCSCI VCIQPPSGKG PKHKSTCTCN VCTSVKRRFN TLMLRKKKRQ SGEHDEEQSL KILSWTPSSS EDLSKNASGS SLDTHLSKSV SEFSRAVILE NFDKSNGHLN LNSHPMQVEG NIVHSKMVDH SQQMKFTEDS VDGQKNPDQS TSPDVGYIGS EKRH // ID A0A0K9PXA6_ZOSMR Unreviewed; 1067 AA. AC A0A0K9PXA6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_144G00340 {ECO:0000313|EMBL:KMZ73673.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ73673.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ73673.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ73673.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ73673.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000555; KMZ73673.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 931 1015 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1067 AA; 119401 MW; 1ED64BD6B8FE4336 CRC64; MKGQQGNNVF VAPTVTPTSG EGGGGEKKST INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK DVKAPIPNYP NLPSKLICLL HSVTLHADAE TDEVYARMSL QPVNPQQQNT TLLSTDYGLK SNNKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPVQEL QARDLHANLW TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSILFIRDE NSQLLLGIRR ANRQPTNISS SVLSCDSMYI GILAAAAHAA ANSTPFTIFY NPRVSPSEFV IPLAKYNKAI YSNQLSLGMR FRMMFETEES GTRRYMGTVT GISDLDPVRW KNSQWCNLQV GWDETSVGER RNRVSLWEIE PVSAPFFICP PPIFRSKRPR QPGMPDDEPS DMDNLFKRAM PWLGDEICIK DSQFQNAGGM PGLSLVQWMN MQQNAQNPPV VIKNTQPDYF CPTSVTRGPD LQNQILQQNQ FNGDSNNKPP QPPSQQRQQD VLQLNQNLQA STLNQQINQT QNNHHLQSPS LVHHNFQSSQ STALQNQKLQ APLQQQQYIL QQKQQQQQKC QIPTQIPPQV NQQFDLPEQH IHFQILQKIQ QQQKQQQSLI IQTPPQHRVH ENQHKTILEN PEVSQHHKII TQQQSSATNV YNVVGSSHIS QSTQHPILKS PQLQRNMTEE LTGNLIMPPT SGGEQLTTFV NDVLQPETNN GSSNSTTFMH NTDRVKSVAS MQILSPGNLK ANTTVDEVEK SEKHSKSSSM FIPSEEQIPG TFGTQIDHLE SSNSGTSVCL SQTDVQMQHQ TCIPMSPFNH SFLFRDTTGL DEIQTGDLRN NVLFGVNIDD SPLCAPDTTD NFLIKGIDSD KDFQNNISID NLLAEANYNT TKEAQQEISS SIVSQSLGVP DAAAFNSIDS SLNDNCFLNK WSSAPKIQRL RTYTKVYKRG AVGRSIDISR YSGYNELKQD LSRMFSIEGQ IEDKQRIGWK LVYVDHENDV LLVGDDPWEE FVICVRCIRI LSPQEVEQMS LDGDLGGNAC VSNQACSSSG GGNAWRDQQQ FDQNSGNLPY AGFYDQL // ID A0A0K9PXU0_ZOSMR Unreviewed; 595 AA. AC A0A0K9PXU0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ73734.1}; GN ORFNames=ZOSMA_141G00040 {ECO:0000313|EMBL:KMZ73734.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ73734.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ73734.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ73734.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ73734.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000537; KMZ73734.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 595 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 534 595 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 595 AA; 66929 MW; 11A7C60258A0D1EC CRC64; MNHVECDACI VKCMTDHERS SGSFFFFTLM FKNFETKLII PMEASRKILN LVNQTTSIED SLGKSWNVEI SEFEGRLVFQ EGWEIFVKAH GIEFGNFLVF QYIVEKSSFV VRIFEKSGCE RLEFPSKSNS NGRNYTSKQK QGDDGDYCGL KSSIPNEDPT KVKNLNMEWN QVDNDGGGIN ISIPKEDLAT HKKTDFKRKR DDDCGGFKSS IINEHLSKPQ KSNVHASGEA KLPKPIDYNH LLESMKRPIY NSSKKMAENK QRQDDDIGDP KTSITNQDLT KIQKTNVDAS GQAKVPKKID NNDLLEIMTC HLRMAQNLRS LQDDHDCIIV VEEDGTCHIY KQEPDSSIQF KSNASAGTIC GDTFTMDGNN AARCIQPGSD MNFLNKFHEK PESTKQANPC KDSSAVDEIK NGNNDEIHIH ATCDDVKSCN ITKSEKVDVE GGGGGNNICC SMGVDSAVKE NNDEHNKKEK SLAIVTTIKK TESNLFLLVP VASSTNNDLS NRFIFRVTGN PHRPWLKLSE EPLPLPKKKE RKVVLFRDSK LNVWPILYVE SKSFIGFLGG WQAFASTQDI QKGDLCSLNM ASEFYSLFDV RISRM // ID A0A0K9PYV7_ZOSMR Unreviewed; 778 AA. AC A0A0K9PYV7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 12. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZOSMA_133G00360 {ECO:0000313|EMBL:KMZ74186.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ74186.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ74186.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ74186.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ74186.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000391; KMZ74186.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 681 765 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 778 AA; 87961 MW; 34C177DEA6CC09D5 CRC64; MKVSTVGLGQ LSQEVNEKRC LNSELWHACA GPLVSLPNIG TRVVYFPQGH SEQVAVSTSK EVEGQIPSYP NLPPQLICQL HDVTMHADVE TDEVYAQLTL QPLSVEEQKD NYLPLDMGIP SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFT QQPPAQELIA RDLHEVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRIN RSQTVMPSSV ISSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSRYAKAVFH TRISVGMRFR MLFETEESSV RRYMGTITGI GDLDPVRWSN SHWRSVKVGW DESTAGNRQP RVSLWEIEPL TTFPMYPSMF PLRLKRPWHP GASSLQEDGN AFMWLRGDSG DRGLQTLGMS PWVQQRLEPL LVNNENDQYQ SMASAALHDI RNSDDLKQQF LQLQHPFQYS QQPFRNNPLT LQQIIPQMQP QQIQNTQMHC ISESQSQGSS HQDQLQQTYR ESFQIPNNQI QQNQIALSSP LSQKTIFPDT GTNFPQSLPT MQNVMGNLCP EGNANLLTFS RTEPIVSEGQ HQSWDPKFSA SNATTFSNTV PPFLGKDTSL ETEHCNVDSQ NHTLFGVHID PSPFLPTAVP NIDNDITIPY GNPCFQNSLY GCVDETTSLL HSTGETDQQN RTFVKVYKSG SVGRSLDITR FSNYNELRES LGHMFSIEGL LEDPLRSGWQ LVFVDRENDV LLLGDDPWDS FVNNVWYIKI LSPDDVQKME KQCLESFC // ID A0A0K9PZN8_ZOSMR Unreviewed; 535 AA. AC A0A0K9PZN8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ74491.1}; GN ORFNames=ZOSMA_127G00120 {ECO:0000313|EMBL:KMZ74491.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ74491.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ74491.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ74491.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ74491.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000304; KMZ74491.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 285 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 432 532 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 285 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 432 532 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 535 AA; 62162 MW; 3FD7AB381FF0B6C1 CRC64; MIDVGETNEF FKVLLDGFNE KLRIPDKFVS SFFREQGKVN LCSSILGKIW CVEIRQHSDG LYFSGDGWIE FVQDHDLHFG YFLVFVCHQN INFFVKSFDH SGCRKLYTPI NDHVEQSNFS EERNNLSEAR CAAFTRENNF KEGDVCNFKL VSRVDLSVKE ENSNVPGRNI TQRGRNKSET VTLKPKVMKK EKTNVEKFLK AMKKPQFKIS TQPSYIDKKL MHFADRFHDT DINETTCSTT DERFSAKFRK EGDSSFSRRN FSRKTTGDQL KKSVANILNV IKKPQFKKSM ARSYIYKNFM SFPSSFRDAN NLFDINEVIL TNNNGCWAVK FCHCFRKNGI LYSFFSGGWS VFKLENNLKE GDVCIFELSS TYENRANFIV TKEMNLSRNY DHSNVSRQKK CRKVNISETT TLKLMATKKR IVEKSLKVKQ KPNFKINMTH TSINNYLHFP QAFRDANNLS TINEVILTNT NGYWPVKFYQ RISRKNGYVR SVFSSGWVIF TRENNLKIGD VCCFELSSTN ESKAIFSVTK LSAFD // ID A0A0K9Q3M4_ZOSMR Unreviewed; 401 AA. AC A0A0K9Q3M4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KMZ75779.1}; GN ORFNames=ZOSMA_10G00470 {ECO:0000313|EMBL:KMZ75779.1}; OS Zostera marina (Eelgrass). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zosteraceae; Zostera. OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ75779.1, ECO:0000313|Proteomes:UP000036987}; RN [1] {ECO:0000313|EMBL:KMZ75779.1, ECO:0000313|Proteomes:UP000036987} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Finnish {ECO:0000313|EMBL:KMZ75779.1, RC ECO:0000313|Proteomes:UP000036987}; RA Olsen J.L., Schmutz J., Jenkins J., Grimwood J., Amirebrahimi M., RA Tice H., Chovatia M., Van de Peer Y., Rouze P., Verhelst B., RA Lin Y.-C.; RT "The genome of the seagrass Zostera marina."; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KMZ75779.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LFYR01000113; KMZ75779.1; -; Genomic_DNA. DR Proteomes; UP000036987; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0009289; C:pilus; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 2.60.40.1090; -; 1. DR InterPro; IPR000259; Adhesion_dom_fimbrial. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000036987}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000036987}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 184 283 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 401 AA; 44896 MW; 209621E67048FE92 CRC64; MSNPPHSNIP PRSFGCSSLA TVPPLQYSSD ELNVEFISHV GSSSSSSPFP LSLDECYNIQ QTPYTFTSSS SSSAPASTYV FTNMTAPVEE SGTGVQQYLM NNNYDQMIGV PSWWPLHGGD EMGNTEVQQQ TYSATTTTCS SAPTCLASWM DQNQSMPLTL QYSPYTQDLS LFPSLEHMGY GFVLQKELRN SDVNNIGRIV LPKRESESTL PFLSVKEGIQ LSIMELFNPC VWRMRYRFWP NNKSRMYVLE NTGEFIRRHG LKCGDYIAIY QDMSKQLYIC SRRVERPLLE ENPTPSSTTT PVVTAAQMTS NAVVDMQTME EQGQATRDSF EMGSGFFDTS LESGDNSFQF TDPSTSLFDT ARGDHYSTRH LESLPNIEDC DLSIYDVVPE KTTGGDHRVL K // ID A0A0K9Q8H6_SPIOL Unreviewed; 892 AA. AC A0A0K9Q8H6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA03570.1}; GN ORFNames=SOVF_207850 {ECO:0000313|EMBL:KNA03570.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA03570.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA03570.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA03570.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ216532; KNA03570.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 311 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 571 621 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 311 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 892 AA; 97952 MW; D869D407F0E81C07 CRC64; MGSKTCMNIL CGTTSSAEWR TGWNLRSGEL ANLCDKCGST FERQIYCEEY HADDSGWREC VTCSKRLHCG CIASLALIEL LDCGGVRCIG CARISDPSLS LNAGKCEGSG PCDVTEKSAG PKQLGNYKEN NWSNQLSIMQ NSNSNLAFGL LKQEELSLPP AQAGTTWISN LAQSSMGSFQ KTRFDVSTSS MQAKDNYGAI THPNLNIALG IPTGNLQATS SAIVDGMEQR KMSDTFHQGF TSPNLLPTPP KLAFSPVPDT NPVVIPQIRV ARPPVEGRGR HQLLPRYWPR ITDQELQQIT GDSNCTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPIKI QDVKGKEWLF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ASNSGSVQDA ASPAIRNASL SSESFFPGVI ENLPVMSGCS GLLQSMKGST DAHMNALSRQ LDSSGGNVPW NNSEKCNERT EEVTLTLERK KSRNIGSKSK RLLIDNQDVL ALRLTWEEVQ GMLRPPQSAR PSVVVIEDYE FEEYEEPPVF GKSSIFTARP SGAVEQWAQC DNCSKWRRLP GDILLPPKWT CADNAWDQSR CFCSASEELG PRELENLRHL SKDSAKRRMV MASRMAQEQE SSGLNALASA AVLGDNTNDP GTSSVAATTR HPRHRPGCSC IVCIQPPSGK GKHKSTCTCT VCMTVKRRFK TLMMRKKKRQ SEQEAEIALK NYQKQIPKED VKADVENNDK SHLEDRNKTE DELHVGPTQT NNDGGQNPMS LLAESGKSLD LNFHPEREED LRMRSAPSSL TNLLQLASLP LEAYMKQSGL ASLSAEQQAS SASLLGQTGE KAIDEYPVGP EQVNTSNGSC ESSEHKQHCD PL // ID A0A0K9Q9G1_SPIOL Unreviewed; 902 AA. AC A0A0K9Q9G1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA03328.1}; GN ORFNames=SOVF_210260 {ECO:0000313|EMBL:KNA03328.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA03328.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA03328.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA03328.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ220771; KNA03328.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 329 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 594 644 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 329 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 902 AA; 99153 MW; 4B9555ED68D75E3D CRC64; MGSRICMNTS CGAKTTVQWK KAWQLKSGEI ADLCYNCGSA YEKRVYCDTY HAEETGWREC SLCNKRLHCG CCASVPLIDI QDFGGVWCIS CAKSAVCHSV KRDVISGDAQ NSGKVSNAGD LQNTPLSNKL ETNVISNGNL FSLANIIEPN VSRFLPQSPP DLTNGPFGQI KPEAKTSSIG VAGLGFSKFS HSINGPTLCA PPKEDKPNTG VKDVQESHMP SLNISLRLPS ETSSFGLTFS GGVEEGENSR SPLFQSGQRP RQILPKPPKT NTAKVSDASK SSFSPMRVAR PPAEGRLRNQ LLPRYWPRIT DQELQKLSGD LKTTIVPLFE KILSASDASR IGRLVLPKAC AEAYFPTINQ SEGLPLKIQD IKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRIDPGG KLVIGFRKAS YTHEMQDPQT PSANPNGAAY GESCYPDVPD NLPARNDNFG PQSMGGAKDN QPSVLPEQSN LVNGNTVWGK SEKLKSMVKD DVLEQPKPSS DKKRMRNIGS KSKRFLLHNE DAMELRLTWE EAQDMLRPPP SVNPSIIMVE DFEFEEYSDP PVFGKKTFFT TRLSGGQDQW AQCDNCSKWR KLPTEALLPS KWTCSENFQD SARSSCSSPE VMIPKELDNV IRGSKDSKKR KGAESLEQRG EPSGLDALAT AALGDNEEPS AGATTKHPRH RPGCTCIVCI QPPSGKGKHK PSCVCNVCLT VKRRFKTLMM RKKKRQCERE AEIAQQKSNE QQMKGPQLLK KASGNDVMSS KNHLEKVQAE EGESSSKGHI DLNCHPIREE DATAVDAQSS IGIMALAQAA TTTPLDMYMK PNGLSDLLRK QPMETDSCLL QKACDYADKC LLNKEEGHVS VVKEQEQCKA DGDGSSKKPA LD // ID A0A0K9Q9T3_SPIOL Unreviewed; 152 AA. AC A0A0K9Q9T3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA04030.1}; DE Flags: Fragment; GN ORFNames=SOVF_203370 {ECO:0000313|EMBL:KNA04030.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA04030.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA04030.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA04030.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ208560; KNA04030.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 152 152 {ECO:0000313|EMBL:KNA04030.1}. SQ SEQUENCE 152 AA; 17385 MW; 1C05EAA5250B3BD5 CRC64; MNEVGFDQPK SELEPESERE GEPVFPTDSC EEVDVDIEPL SGKPFCHVVL KKSHVGDAHS VCQLKLPAHF SRVLPNKRVP IILTRGERSW ETTYHGTHKK FDIRWKVFVK DNKLKVGDVC VFEAMECNDS ALKFKVQVLR GDFPCMLLDK ED // ID A0A0K9QAR9_SPIOL Unreviewed; 287 AA. AC A0A0K9QAR9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA04382.1}; DE Flags: Fragment; GN ORFNames=SOVF_200280 {ECO:0000313|EMBL:KNA04382.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA04382.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA04382.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA04382.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ203844; KNA04382.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 173 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 287 287 {ECO:0000313|EMBL:KNA04382.1}. SQ SEQUENCE 287 AA; 32257 MW; 77490600D1F897E4 CRC64; MKNSAVSKAE LKMALVTKRL AMLQDHHEIV PVLSQVSPLQ VLPNESHPLQ CESAKLLMDP SDDTLSEDVL IPKSSKNRIK FGSHKRARII SDDESYEDEE HMVSVPPPRK KGRTKQKMIK INDPSNDENV AIDNPRRQKR MDLIEPSSMG EKSSSMKRPE EVQANLAAES PSFIKPMLKS HVSGGFWLGL PRNFCDDHLP IRDCTIVLVD EAGKEFDTVY LSRKAGLSGG WRGFSIYHSL LEGDVLVFHL ISRMTFKIYI IREQNFGEVD GALGLLTLDS RVGQHKS // ID A0A0K9QAX0_SPIOL Unreviewed; 363 AA. AC A0A0K9QAX0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA04410.1}; GN ORFNames=SOVF_200060 {ECO:0000313|EMBL:KNA04410.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA04410.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA04410.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA04410.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ203619; KNA04410.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 352 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 352 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 363 AA; 42051 MW; D5D1307F9F1C5E7B CRC64; MCYNQTLPKK FTEYMKSKLP EQIVLKVNRV SWNVNLKKEE DDIMFHGDGW EEFVKAYSLK KADILVFKYN RRESFEVLLF DRASLCEQEA SYFVRKVQQN SDDDKEDHDR SEKTRKDLTG DKSQEDYDSE SSAPRNRRKK NPASTPKSNS GRTARAKEDL DDEDESDESS DEEDSISEEA KTTPNKTATA IARESPPSSS RKRKRNGDKK ITGNESSFSL HQMCYRSNRR EITEEEKANA LTKAKMASVQ FKDSFIVVMR PTCVYKRFYL TIPSDWKPRI RYRKGQQVCL IVKEKTWDCR VSFSRNNIGF QGAGWKKFAR ENLLEEFDVC VFVPCGAKNE RSILDVSIFR VVPEAVPPTL VTP // ID A0A0K9QC35_SPIOL Unreviewed; 227 AA. AC A0A0K9QC35; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA04832.1}; GN ORFNames=SOVF_196040 {ECO:0000313|EMBL:KNA04832.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA04832.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA04832.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA04832.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ197959; KNA04832.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 25741 MW; EFBBE2A1B01649F7 CRC64; MGKVSYEERR QKRVEENKKR LDDLNLTHLS QALKNLSPKS SPIKKVWKPR TVENRMVAVR RSARVAKHPA PVYIQVHLPR SSSPRKSYGV VRGNYGVARD EERASTIEKA EKLVGKLEEE GFPTVIRPML PSHVTGCFWL GLPSEFCRTR LPNNDATVTL VDEEGDEYPS VYLARKTGLS GGWRGFALAH ELVDGDTVVF QVISHSIFKV YIIRRSDELN KVLTSED // ID A0A0K9QCT3_SPIOL Unreviewed; 295 AA. AC A0A0K9QCT3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA05060.1}; GN ORFNames=SOVF_193850 {ECO:0000313|EMBL:KNA05060.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA05060.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA05060.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA05060.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ195210; KNA05060.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 198 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 198 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33174 MW; DCB7956481892363 CRC64; MLMMYEHFPV REMNGEPQPM TDNDQASKHK HEHEHEDKVI DESEPEPQGV VPTDSCLQED VDIESLSGKH FCHVILDKSM SKNDQASKHE PQAQVEVVPT DSCLQDDHDV DIGPQPLTKN DQASKPEPEP EPEPEPEPEA IHESEPQAEA EVEVVLPTDS CLQEDDDVEV ESLSGKPVCH VSLGKSHLGR GATCTCLLAL PIHFTRILPN KRVPVILTHG PKSWEMAYHG DAKEVKHKRF DTRWRVFVED NKLNIGDVCV FELMECNHTS LNIKVQIRRG DFPSQLSTIT HYGPG // ID A0A0K9QCY4_SPIOL Unreviewed; 326 AA. AC A0A0K9QCY4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA04563.1}; GN ORFNames=SOVF_198550 {ECO:0000313|EMBL:KNA04563.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA04563.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA04563.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA04563.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ201632; KNA04563.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 326 AA; 36167 MW; 4F08D8039282C956 CRC64; MGSSEEKLPE FFKTFRPDNH SETMKIPDAF LEHLSAKIPK KVVLKNRFDD CWPVGIVETE DGLFFQEGWS KLVSDYPLLG GEFMVFKFDG YCTFEIRTPN TSHFKKQPVT GCFAGQEEAK TPTEEDNEEE EDLVMDQAEN SATKKNLGRG GNYSFTGYHV KNLGKGITDL FPSNNPFFVT KIRKNDCRND LIIPHDIRKD SGVKFRDRVK IQEPNGRVFQ GKIVADRMAS EQPASTSGRR PGKEPVNDDI DMATGEYSDG DSIFEDSAGK DFDDHRGGDG DDAGVSGRND TDIGDDGIGS DDDDPADVIV ADVLADEAKE QXHGCS // ID A0A0K9QEU5_SPIOL Unreviewed; 176 AA. AC A0A0K9QEU5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA05061.1}; GN ORFNames=SOVF_193860 {ECO:0000313|EMBL:KNA05061.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA05061.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA05061.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA05061.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ195210; KNA05061.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 176 AA; 20073 MW; C9F65350F63F132A CRC64; MSDGPKPLVK NEVKVEPENK FEVDPVLETK DELVLPTNSC DDDDTDIEPL SGKPFFHITL LRSHVGGGTN KYQLILPKTF TQKLANKTIP VILTRGKRSW EMAYLGQNAA HYKKFDQRWK AFVHDNKLKV KDVCIFELME CSDNALKFKV QVLRSDFPSI LLEKEDGTIN NPIVVE // ID A0A0K9QGH9_SPIOL Unreviewed; 188 AA. AC A0A0K9QGH9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA05666.1}; DE Flags: Fragment; GN ORFNames=SOVF_188220 {ECO:0000313|EMBL:KNA05666.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA05666.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA05666.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA05666.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ189259; KNA05666.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KNA05666.1}. SQ SEQUENCE 188 AA; 21855 MW; 97EF1A59B68EAA00 CRC64; HPQFFKVFQP QTSSENLMLP PAFESKLSGE IPSRVVLKKN KKIWLINVVR IDGRLHFEGA WSKFVLDNSL SFGEFMVFKY NGQRTFDVLI LGRDGCEKES GNTEETEDSE EEPVVKHVDD DDDDYGNAEE TEESEEEHVK HVDDDYEEDE DDEDEDEDDD DDDYTMPKHF LPKYNYNSVQ GKTNSIWG // ID A0A0K9QIC1_SPIOL Unreviewed; 971 AA. AC A0A0K9QIC1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA06326.1}; GN ORFNames=SOVF_181860 {ECO:0000313|EMBL:KNA06326.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA06326.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA06326.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA06326.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ183587; KNA06326.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 494 586 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 857 956 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 494 586 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 857 956 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 971 AA; 110527 MW; 6E9D8E94D1FAC871 CRC64; MTENSECSYC KTWEEEMYWK HFNLMHFLQI LTPNFHDHLV LPEKFTAHMK AHLPDKVSLK GPSGAKWEIE LLKAADDILF VGDGWKDFVK VNKLKENYVL VLKFNRNSSF EVLIFDQETS CEKEISYFVK KCSHVKSDNE VQKKTIAREA STEIIGDDEG EKDSGFEVSK KSKKDDQVVA FSEQVNTQAS RKRGPSKARG KPTRILPCRL PVKRKFQSGK KSLGNETAKE PIEISQRDML TPENGESIPA KGHSDRLVSH SKKSVNIAKK VSQNSRTELI PPENGENSAT ADHSEKSKGQ SEEHVAEEQP SGNHIANEPK LISEMDFDTT ENEESFRARD HLPKLKPQSE MRPSSNGTSK EPRQVVEKEL IAPENGKNFP ETDCSNGFKG QAEKEPSGRR GIVKEPSPVS GRKVIRPNYK DNSSEEDHSS KSRGKRGRPK KQVLPISSKK LEFRSVSDER KFSKEYMSNR RPVTEEEKEQ AVQRANQIQT ENSFIAIMRP SSVYNRFFLN IPAKWMQQHL PYRKQRVILR VGERKWHTSL FVYAKGAGIS AGWKKFALDN FLEEFDVLVF NVVSQEDEII VVMDVDICRV VQKVKSKKDV DREVNCAERE ENTQNPKSQL STDIRRRLRK VQPRKHPFTC VHESRIFLAQ SGELVERPIA EEKQPSINVA TQEPTQISLR EMTTPQNGET SPTKDHSDKF KDQIVDLAEK SPGGNDIGQE LSPNSGRDWS TPGPEDEEDS SETNHPHKVN SLSGKEPTEN GTAKKMSRFL SKGPIVLNFR ECSPEADDSH KSIRKRGRAG RPKKLALPKS LIKQAPRSVS AGRKGTPEYV SNRREVTLME KEDALQRANQ ERTENSFVVV MRPSSVYRRF YMSIPAEWMN KNLALQSQEF VLGVEDKTWV ISFYYNFKRG TGGLCGEGWK KFVRDNSLEE FDVLLFKLPN PNNATIVFDV EIFRVVPKIL PPLLVNSSIL A // ID A0A0K9QLP1_SPIOL Unreviewed; 315 AA. AC A0A0K9QLP1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA07511.1}; GN ORFNames=SOVF_170880 {ECO:0000313|EMBL:KNA07511.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA07511.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA07511.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA07511.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ175660; KNA07511.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 299 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 37009 MW; A749E084C4F1764B CRC64; MANICETCED LKKYKYWHDL QNIKHQFFKI MLGDFEHHLR IPRHFIGCFM GDLSHSSVLK GPSGNEWEVQ IIKTKEDVLF SNGWEKFVKD HGIKEGCFLV FRSLLHLEND EGCSQTTKFA ATKLSESKLM KKKLDISSDE EMEMGDRPSR RSRRTSQGKQ SQMHYISKRR EVTEEEKDHA KDMARNHNKS SSKSSRKRMF EIVMRPTHVY DGFHLTIPKE WALEHMHPKD HEVKLRVPGG KEESWVVGCR WTSQRQCQIR PRWSTFVLDN NLEEHDVCVF ELLQKGESGK NRLPIFDVHI FRVVSEVVPL TVLRA // ID A0A0K9QPU4_SPIOL Unreviewed; 283 AA. AC A0A0K9QPU4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA08718.1}; GN ORFNames=SOVF_160120 {ECO:0000313|EMBL:KNA08718.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA08718.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA08718.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA08718.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ169392; KNA08718.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 70 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 70 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32269 MW; 5F6A5048977B26CF CRC64; MRDKLPHKVI LKSPGGAAWE VRLMRDNNDT FFSGDGWKEF AKAHNFKEND LLVFKYIRES CFKVLVFGGG NLCEKADSYF VKKSVLGKND AGENSQLKRK STNERTDKVV GNDEELLLET DDSDNEKDAA EASRRKSRRR HSICSLRNNG ADVEPHTPNN VPLSAADKAR AMQLASQETT NESFTVVMKA SNVSFYYRLR IPSPWARTYL TRKNQYMDLR ADGRKWTVRF NTEPRYGGGV LVTGWYKFAI DNLLQEFDVC LFKLVSQKGE PVVFDVSIYR AAP // ID A0A0K9QR87_SPIOL Unreviewed; 270 AA. AC A0A0K9QR87; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA09046.1}; GN ORFNames=SOVF_157210 {ECO:0000313|EMBL:KNA09046.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA09046.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA09046.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA09046.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ167916; KNA09046.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 166 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 166 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 30836 MW; 48B6ED3BDBAF17B4 CRC64; MRETEISEEP KSKNLSHGAK FMQPLSPGFL NTFSIPESFL DRFKADGYEP EIMVLVVDDK RNWPVKLKGG RHFGDGWKEF AVHNDLGVGD FLVFTHVFNF IFNVTVYDPT TASARQYSPF SNDSNFEGTQ KTDGLNFNDR FTHKRNPVED DAATAQVPSV ESQYPSCRVT LCPSGFKNSQ ANFPKEFIRS TGLFRRCCYM KLVDGEGKTW KVKLNSKKRS GQSYIGEGWK DFQVAKSLKP GDVIIFQMLK NGERPVLKCY RLCSRKRHRG // ID A0A0K9QSD3_SPIOL Unreviewed; 880 AA. AC A0A0K9QSD3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_146820 {ECO:0000313|EMBL:KNA10174.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10174.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10174.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10174.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ163230; KNA10174.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 772 856 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 880 AA; 97053 MW; 5BD9EAF5AD552BB3 CRC64; MAAASVEEKV KTGVGNCGPP STTLLEEMKL LKEMQEHSGA RKPLHSELWH ACAGPLVSLP QVGSLVYYFP QGHIEQVAIS TKRPATSQIP NYPNLPSQLM CQVHNVTLHA DKDTDEIFAQ MSLQPVKTEK DVFPIPDFGL KAGKHPTEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLD YTMQPPFQEL VVKDLHDNTW TFRHIYRGQP KRHLLTTGWS VFVGSKRLRA GDAVLFIRDE KGQLMIGVRR ANRQTTTLPS SVLSADSMHI GVLAAAAHAA ANRTPFTVFY NPRACPTEFV IPAGNFRKAV YGTQVSAGMR FGMMFETDES GKRRYMGTIV GISDLDPLRW PGSKWRSLQV EWDEPGCGDK QSRVSAWEIE TPESLFLFPS LTQGFKRPFH PGFFGGELEW GNSIKRPFIQ LPDIGAANLS YASLPNVWSE QLVKALIRPE SMSYPSMLAS CPPPSILQET KAKVEAAMLH KPHILSSHNV SVQNYPSQQL NQRDVGNVSG MEQASKANQP SMDADKTRPE PLCEPNQLSQ HASAGHCNEE RETSNPSNPP SLQNIETRDI NQKLMQPPAM SSVFQSQLTD APPSDLSNLN GLFPYLDTSD WLPYSSATNS ELIDHSLPSI GQDLWDQNQN LRYPAQSDQF GSYSQLSDET NNQSGIYSCI DLDVGNGGNA IVDASISNAV LNKLCPSKEA SLQYSSDCLL GNFGSSQDLQ SQITSASLAD SQAFLQDFPD NNSGGTSSSN VDFDESSLLQ NNSWQQVVPP MRTYTKVQKS GSVGRSIDVT SYKDYDELRS AIERMFGLEG LLNDPRGSGW KLVYVDFEND VLLVGDDPWE EFVSCVRCIR ILSPAEVQQM SEEGMQLLNS NAIPRISGAA // ID A0A0K9QSK2_SPIOL Unreviewed; 480 AA. AC A0A0K9QSK2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA10220.1}; DE Flags: Fragment; GN ORFNames=SOVF_146300 {ECO:0000313|EMBL:KNA10220.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10220.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10220.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10220.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ163082; KNA10220.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 429 456 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:KNA10220.1}. SQ SEQUENCE 480 AA; 53753 MW; 4E066AEF1E148EDE CRC64; KREKTVISKK DMKMALVAKR ISMLQDDHED EVHPVLCLEN PVQCESTKLL KDISDDTDTL SEDVVLSNLS KNRTQVGSHK RARVVSDDES SEDKELVVWA PLQKKGSQRM DPLCDKPSSM KRAEEVQANL PAEYPSFVKL MLKSHVSGGF WLGLPKKFCD QHLPICDSIV VLVDEAGNES RTKYLVAKAG LSGGWKGFSV AHDLLPGDTL VFQLITPTKF KIYIVREQTF CEVDGALGLL TLDAGAGHQK SEVSNQKFLQ TEDDYIFTED LSRSNSDGEL GSEVLDGICF SDSDIKFEQV KGFEDFHIVV DGLIIDSKFT ANTRKKYYEL CQSQSSFLHE NFLKGLNCNL VVGVISETIN IADAIKSCKR GSSISHEDLQ TWEKTLKGSE FLGMKVDFLR VCINQLLGIA VESSTTNESN KLKERITRRA LAGERMKKLE VKLTQLKQTM EKIDLEMDDE IKMANAWKQE GSIIMEIPAV // ID A0A0K9QT12_SPIOL Unreviewed; 287 AA. AC A0A0K9QT12; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA10404.1}; GN ORFNames=SOVF_144670 {ECO:0000313|EMBL:KNA10404.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10404.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10404.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10404.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ162299; KNA10404.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 33024 MW; 22C67A5CD47CF4C1 CRC64; MSLYRPTKPH FFQPLIPGFQ SNFSIPKSFH KYLGVGSEKG EKTALLIDKR QKIWDVKIDL GDNLQFKQGW VKFCEDHDLQ IGDFLIFRHQ GFWVFDVFVF DPTSCEREFP TLDDESTTTV VQALSSNGKD DTICFELTKN GDKPVITFYR VSIAEGDKKL LEQDFASFNS TCCRYFRSIV SRSNLSRGLI IIPKHFARKN GLTRRKCDMV LTDIKGRSHM MKLGYEGNKD CGSDFLHGKR SLYKSYGLEK GDIVIFELIC NGDKPIMKIY CCTKPVRKGK WSNNNMV // ID A0A0K9QU55_SPIOL Unreviewed; 664 AA. AC A0A0K9QU55; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_141030 {ECO:0000313|EMBL:KNA10794.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10794.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10794.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10794.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ160794; KNA10794.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 548 640 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 73713 MW; 0914991039DA428B CRC64; MAERRNNEAF AGMGGEALYT ELWRACAGPL VDVPQIGERV FYFPQGHMEQ LQATTNEESD EQIPRFNLPS KILCQVLDIV LKAEPETDEV YAQITLVPEK DQDVELKSSD SSLVDPPRPK VQSFVKILTA SDTSTHGGFS VLRKHANECL PPLDMSQPTP TQELVATDLH GYEWHFKHIF RGQPRRHLLT TGWSTFVTSK RLAAGDAFVF LRGDNGDLRV GVRRLVRQQS PMPPSVISSQ SMHLGVLATA RHAVNTCSMF TVYYKPRSSQ FIVGVNKYLE AVNHKFSIGM RFNMKFEGED TPERRFTGTI VGVEDVSAQW SGSKWRSLKV QWDEAAAFHR PDKVSPWEID PFAASIPVNP TPPPTQKTKR SRPSDLPITD ITGGSAASNF WYGSAHTNDF SSPRNQRDNI WTPTYGGNSL RFDKKDDSKA SSVQSCSTPS TYPYLAPSRL GADNSVQVNN GGKSPGSCRL FGIELRNSSY IAPTLEKVTV CPENLSNGAK VTDDTSAGKA DEVQNTQVAE PLKELNEAIS DASQKETPTK QLSQSSTRSR TKVQMQGVAV GRAVDLTMLE GYDELICELE KMFDIKGELQ TRNKWAVVFT DDEGDMMLVG DDPWEEFCNM VRKILIYSSE EVKNMSSKSR LCSPSAEEGT VLSLGTEQKS EAHD // ID A0A0K9QUC1_SPIOL Unreviewed; 620 AA. AC A0A0K9QUC1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_140590 {ECO:0000313|EMBL:KNA10850.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10850.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10850.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10850.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ160596; KNA10850.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 68617 MW; D79E1A6318D80E58 CRC64; MKEVESCLDR QLWHSCAGGM VQMPEINSKV IYFPQGHIEH AQVNTTDLKN YPKIPPLIPC RISGIKYLAN QENDEVYAKI RLIPLRKNDF DFNDDDDGFI GSNYDMEGSS EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTILAKD VHGVTWKFRH IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRSENGDL FVGIRRPKRD ILYCGGSSYG GGEGGGCGGG GFGAFLRNDE NRMVRSFEGM GSNNSSSSNN EKMRAESVVE AANLAANGRP FEVVYYPRAS TPEFFVKTGA VRAAMQVQWC PGMRFKMAFE TEDSSRISWF MGTVSSVLVL DPIHWPNSPW RLLQVAWDEP DLLQNVKRVN PWSVESVPNM PPIHMSPFSP PRKKPRLHQV PDQIPFADHL PIPTFPSRLY GPNGSGPGSL FGFAEVVPAG IQGARHANFR QFLSDHIINN KVNYSSLLSN GPDLKFHHGS SFSSKKPIVR ENLSSFLTMA TTLQEETPKE NDTMTPKFML FGKPILTQQQ ISESCSSDSA KTGSNSSDHD NCNDTSMNRS SSSGGEFPSL DSDAGRSLSL SGLSSCDGLY KKIAQHVWQG KILEAEQCAL // ID A0A0K9QUD7_SPIOL Unreviewed; 385 AA. AC A0A0K9QUD7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA10884.1}; GN ORFNames=SOVF_139930 {ECO:0000313|EMBL:KNA10884.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10884.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10884.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10884.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ160446; KNA10884.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 126 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 200 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 126 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 200 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 385 AA; 42659 MW; 98B3A7E2B40FF575 CRC64; MDLSSMDESC STTDSLIPQM IPDIMKIAAA PFSGKASATA GSLCRMGSGT SVIIDSENGI EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAAQRFRGRD AVTNFKPLSI EDQSGAAELR FLNSRSKAEV VDMLRKHTYL DELHQSKRNF KVVDVHKLGI GSTLSSDKSK PSDCGQEQLF EKVVTPSDVG KLNRLVIPKQ HAEKHFPLQG GNGTGTGTYS SSSKGVLLNL EDVNEKVWRF RYSYWNSSQS YVLTKGWSRF VKEKCLKAGD IVSFQRSTGP DRQLYIDYKQ RTIINESLGQ IVQAPLEIRS TGQMLRLFGV DICKVPTTMV EVPPGNGCGN GKRYREVELL AMDSTSKKQM VVAAL // ID A0A0K9QUI8_SPIOL Unreviewed; 642 AA. AC A0A0K9QUI8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA10957.1}; GN ORFNames=SOVF_139420 {ECO:0000313|EMBL:KNA10957.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10957.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10957.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10957.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ160154; KNA10957.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 642 AA; 74227 MW; 61909624A530FDFA CRC64; MRNPGKQKEV KPENFNNISK KQKKLRADRI RKKYFRLSRA LRKCDSVQDK KNHPKLNVEY PATVKMMVKG NVSGGFFLRL PLPFCKAHIP VKNPTIMVLE TDTGERYEAK YLPHCYGLSG GWRRFAIDMK LEQGDTLIFQ LVQPTKFKIF FIRVNSTNEV HFPVYLLNLV NRVKERVSSK AGRNQQSFYN RGEVHHNYLQ RKIKELRAKK FWRKDLVVPQ VLGKGDLVHA KNIQSELDFE HPVTVKWLMK GNISRGGTLA LPAPYCRAHL PVIVTNMVLE TETGEQYTTK YLPQSCRLSA GWFRFVTKMR LEEGDAVVLH LIEAAKFKVY IIRANAKEVN LPNHLLDLLS HVKQSIPCKA DSRQLIVYTR KVDRIEQQLR WKSARLKSRN GEGSILVGQG VLFSNITSFE EFKAVMNKLI QNHQLPHYAL HDYYQLCCNQ NAFLHAHLFR GFNPRLNNQI IAGAITRIIL DTVNIANELS TCKLSTFLQK YELWDQSLKT YEAYGMNVSF ILARLQHLKN LAVSSEGATD RSRYEEACHE NERAKGEVRK LDLILAKLQT LELKLGEETY RQGYSLAKCV KAEIGSLEVL IQELGEFLSQ YDAHIQELKL KVKAHEYKFH EKVSTPWLHL YSPTFESLEP SN // ID A0A0K9QUK5_SPIOL Unreviewed; 368 AA. AC A0A0K9QUK5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA10398.1}; GN ORFNames=SOVF_144750 {ECO:0000313|EMBL:KNA10398.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA10398.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA10398.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA10398.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ162308; KNA10398.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 296 315 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 147 170 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 368 AA; 43112 MW; A2D9CB665CFB2CB2 CRC64; MVEEKKKRRR EEEGKPNDEL KFKINPNKFF KLILPHILEQ NSSLRIPETF AKKFTPQIRT FATLATRTGL PFKIVVERIE NGLYFTERWA KFMEYNHIKY GYFLEFAYEG NSHFKVYIFD LSCTEIEYPV VELDQHANQK VPRNRNRDGK SKENQEAVEE EEEAEKDKHK DGVVLESNRH NINPSFSIVV RNCSLLRGGA YLHIPTNFTK EHMEGGHLFK YVMLEGDDGR DWCIDCYFCH GVGLRLNGPR WRKFVLRYDW EEGDTYTFEL VDKKQDYATF KISPGRINKL IDHRRVVHLF YIFTLLIPLS LSLSVSPVTL LSSHFSVLTQ PRNQPNWPTP ATPANHRPPQ ATAHPPTAIT QPQHTYQI // ID A0A0K9QVV9_SPIOL Unreviewed; 538 AA. AC A0A0K9QVV9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA11404.1}; GN ORFNames=SOVF_135450 {ECO:0000313|EMBL:KNA11404.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA11404.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA11404.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA11404.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ158779; KNA11404.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 458 536 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 458 536 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 538 AA; 60463 MW; ABBECF1799C28E57 CRC64; MLFNRLSTVC NRRIMGGKME ACAECSRSCS SLHRSKLDPY PIVSSFFKIM FGIQFSQLLI VPPRFAKTIM AMEGKNTYFE DSTGQKWEVN LSNVNGSLAF QKGWNEFCVD HAIELGDFVV LHYFKGSHFI VQIFGRSGCE KPMIYSGMNY QNKRTKLADP CDSTDKETPA TECLDSFKDA SPAVNVTQRK DDLCNVEKSA DIGVNVDNVT RQGNTNKRPK VVPATDFLLE SFFMTNRNTS SGKEDDRSDL YDLSVFEKPG NRVDTDKMSM LIGNTCSKVC TALQETQIEE ASPDVVKYQM TENTFELSNE ADWSRKECVV VALPNNRVDM PLNFSMPLDS LTFPNPNEFS ALASPFEPPG ERMRIVKQEP QPGDVICALN ANTLSRDSAV LFGNKGHKAK NKYIGSHSTA IVEYKGNTDM SLKKEAPELC DSSSVPDIKI TCLVQQDSEY FLELPKPLPV KIHRQDENLE QNLVLLRDPV GRLWPVVHHL RKGFEVLGSG WKEFRKSNSI QPGDECTFEV ENKDEGIIRV QIVSPLSE // ID A0A0K9QVW8_SPIOL Unreviewed; 584 AA. AC A0A0K9QVW8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA11405.1}; GN ORFNames=SOVF_135460 {ECO:0000313|EMBL:KNA11405.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA11405.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA11405.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA11405.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ158779; KNA11405.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 489 584 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 489 584 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 584 AA; 65951 MW; AC54A80039C081F6 CRC64; MDYEVKACGE CSRKCLLFHR GKCGLPPKIP PFFKVMFGKG FAECLFVPPK FSKILTSEVG RKAYLEDSTG KQWEVNLSKV NGSLSFNTGW YKFTKDHDLE QGDFLLFRYT MDSCFFVEIY GRSGYEKTHT GVHSFKNKIP KTTRNSITRK SPSDPLYEKQ KPSQGNDCCN TYAVPQSEVD MSDIIWTHDD VNDVQKSVVV AEKVGRQEYG IERPQLVPEV DFLMEPCFMT DRESSLARED DRERLLDLSA LEFSGMEPSF TSNKTGKAHT GNASIDTKKY PLSQGAFHEA HNGDPSIDTN KFPLIQGNVV PSKNNQEKLP NSVNKPFPSV SPRLSMPSSL VRPSKTIRES HTWKPSATSD FSQTPENYEE KLSGSVNQPF PSVYPSLNMP SRPVPPSKTI HESRTWDASA ASGFSQPPPG GKLRVVKQEP KEFKQEISGN VSPDTSFDSN MSLKRKVKGN ANPMKDDDEA NRVVKQEPAD FCDLEAAAAF RMTCLASPEN ASYLELPGEL PMMWRQRLYV KQKLVILKDP SGRDWPVLYH KRNNINVLTD GWKEFQYANN ILPQNECVFL ADDLDMGEFR VQFS // ID A0A0K9QX95_SPIOL Unreviewed; 973 AA. AC A0A0K9QX95; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA11116.1}; GN ORFNames=SOVF_138170 {ECO:0000313|EMBL:KNA11116.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA11116.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA11116.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA11116.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ159677; KNA11116.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF13855; LRR_8; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 315 419 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 315 419 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 973 AA; 108681 MW; B89794F0CCFAACE5 CRC64; MDSSGAGKFP EKNRTNFPWE MINSSSSSSS DDEVSSDVLP ERSSDCRSTL TFATAFPGVV AESSVSIQTP QRNWVQLLKS EEVLSERSSV SIDNLKANWN HTTEPSVAES SVSVQNPLRS SSVVMSARSS GSRSTSTSIV NNPKATPYFP VAESSGVSQM SIENTQRSGY SPGHDSWDEI TQGFSTMENE YAFIEDAPTA IPTRSPPLPP VTPQLSPLCF ATVSPPQFPM SSAPVSPESN VGCVADPFAQ ADTSIEEVLA AAEELMMHLK VSGSENDFVA AGITERLMLT TRRAKKLLHF GGCSDSLAVR KDLMFHKVLI PSDVGKMKCF VIPKVFADKY FPKISSIKNH QLLGFKDLTG KLWTFLYTYS YDYQSYILAE GWSRFVEEKQ LAAGDAVYFY HGVGGEDKYK FFIHWNRRDD AAANKDLTTI ADDFTANALP YCALFPHSYE FDKDTIIQLW MAHGVFVNEP MEKIAGLIFE KCVIGGYLLF CQTNLVTGKA MYKSGRVGSL ISSVSDKIVH IEGNSNLNDV SVEVSHMSIR CYRQENSCNL QELRRFKQLR TLMFLHGRES SFKQVPRDMF LSMKLLHVLD LSQTHLMELP SSIGNMKCLR YLNLSETLIT RLPEAVDCLE NLQTLKLRGC SNLSSLPKGM RKLVNLRHLD LDVRRQLRLM PPWLGNLFNI QTLSAFLVGL GEECNIRQLK NMNNLSGNFC ISRLENVLTE DEAAEAHLCY KPQLKKLELQ WSDTQDDVLG NREVVSSLKP NTNLEELHIS CYGGFELPRW ICDPAFTKLV SVTLFKCENC SVLPSLGLLL SLRFLNILDF YKLEVIDHNF SGGVGIQGFN AFPKLKKLAI ENMLSLEEWT GMGKSDFPCL VTLTIKNCPK LSSLCTLSYL HSLKNLEISH CDTLESWTDG RLPASVETLI IEDCPMICVE SLQNGGPDWH KVAHVQNVWV DNQEISFGGS SLIENPFTDY FVP // ID A0A0K9QXY4_SPIOL Unreviewed; 424 AA. AC A0A0K9QXY4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA12124.1}; GN ORFNames=SOVF_128700 {ECO:0000313|EMBL:KNA12124.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA12124.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA12124.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA12124.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ156295; KNA12124.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 182 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 182 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 367 394 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 424 AA; 48346 MW; 1166575E6C0C5CB7 CRC64; MSSPSSPHPI PVPFQAESSK LLKNKRSNRN SIKRTWSHLI PCFETGLRHQ HRKPKRRRPT GLESADKIFK SAVINQAEEF QSKLDPEYPS FVKALVKSHV TGCFWMRLPA PFCQTHLPVI DTFFTLETHS KKLYKAKYLA SRQGLSGGWK GFAVSERLLE GDALVFHLIS DTKFKVYVIK ENNLTEVDGT LSSINLNTHE IQSDPGIVDQ TSMQPPQNSE SNSTGNSGRV VDGFPIYEEA TLSPNTVSTF ENFSIVINDL LKDYELPRHI KWSYYKLCCS QDALLHEQLP QWMNHILVGG IIIETVTIAD ALRQCELSTP KEEFAVWDKT LSALELLGMN VGFLRTHQHR LQRIVHDPEV AIVKQKCLEL CAENSRAEDE IRSLTARLVE MKKVHIKRAT DIDNLKSKLS NHEIRFQELV HTPW // ID A0A0K9QY04_SPIOL Unreviewed; 429 AA. AC A0A0K9QY04; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA12125.1}; GN ORFNames=SOVF_128700 {ECO:0000313|EMBL:KNA12125.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA12125.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA12125.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA12125.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ156295; KNA12125.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 372 399 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 429 AA; 48971 MW; DC9D4462F2EEB9FD CRC64; MSSPSSPHPI PVPFQVFHLQ AESSKLLKNK RSNRNSIKRT WSHLIPCFET GLRHQHRKPK RRRPTGLESA DKIFKSAVIN QAEEFQSKLD PEYPSFVKAL VKSHVTGCFW MRLPAPFCQT HLPVIDTFFT LETHSKKLYK AKYLASRQGL SGGWKGFAVS ERLLEGDALV FHLISDTKFK VYVIKENNLT EVDGTLSSIN LNTHEIQSDP GIVDQTSMQP PQNSESNSTG NSGRVVDGFP IYEEATLSPN TVSTFENFSI VINDLLKDYE LPRHIKWSYY KLCCSQDALL HEQLPQWMNH ILVGGIIIET VTIADALRQC ELSTPKEEFA VWDKTLSALE LLGMNVGFLR THQHRLQRIV HDPEVAIVKQ KCLELCAENS RAEDEIRSLT ARLVEMKKVH IKRATDIDNL KSKLSNHEIR FQELVHTPW // ID A0A0K9QZL0_SPIOL Unreviewed; 94 AA. AC A0A0K9QZL0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA12123.1}; GN ORFNames=SOVF_128690 {ECO:0000313|EMBL:KNA12123.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA12123.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA12123.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA12123.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ156295; KNA12123.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 94 AA; 10800 MW; 7571F418BDF5FB88 CRC64; MRTHGSNLSN VIYLNIPSGK VWEFDLVREN GKTFLQKGWP EFVKFYSLND GHCLLFKYEG ESRFDVVIFD TSTSEIEYPL GPKACPKLTS CDIM // ID A0A0K9R051_SPIOL Unreviewed; 593 AA. AC A0A0K9R051; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_121260 {ECO:0000313|EMBL:KNA12888.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA12888.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA12888.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA12888.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ154327; KNA12888.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 593 AA; 64964 MW; BC76A5831B459643 CRC64; MESDGQRRCH YQPQQQQQQL QPKEVDPGMW LCCAGSLIQT SNVNSRVYYF PQGHIEQASG PVSLSERVTS QPFVHSRVLE VLFLADPITD EVFVNYRLQP LNPTGITYEG PATADGGGGG GGGVNGFVSF GKVLTPSDAN NGGGFSVPRF CADSIFPPLD FAADPPVQNI RIVDVQGIVW IFRHIYRGTP RRHLLTTGWS KFVNGKKLIA GDTVVFIRKK LTGELFVGIR RAYKTPPVLT GAYAALAARP KPSPPVGGFS RTKKGRVPPE AVVEATERAL KGLPFEVVYY PRPGMFECVV AAGKAEAACS KHWAPDVRVK LAQETEDGSR MTWYNGKVAS LVVGPDPGSW RGSCWRMLEV TWDEPELLKN MKTVSPWQVE YVADAPIHGV FPLTKRFKGA QEGVRLTDGE GEISFSSIAF SSMMDKYTPS SYINYNNIPA GMQGARQIPF PLPSSSPIII NDGSSRQRCP DDNVDISQKV VEAQASTDPN VASSYETSSP ESSSSVQLPS KGFTSFQLFG KVIQTELPLL EAPHIELPHI ELPHMGPPFV NRDDISCTEC DDYTTEGARN TVDNSLSETT QSQKLPMRKN YAL // ID A0A0K9R0A2_SPIOL Unreviewed; 695 AA. AC A0A0K9R0A2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_121730 {ECO:0000313|EMBL:KNA12938.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA12938.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA12938.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA12938.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ154234; KNA12938.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 692 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 76666 MW; 12DBE2FCFF15A5A0 CRC64; MITFMDPKEK IKEADNCLDS QLWHACAGGM VQMPPVSSKV YYFVQGHIEH ANGNVDFRSF PRIPSYVLCR VEDIRYLADQ ETDEVYAKIR LSPVTNEVDY SDDDIGVHGT EVQENKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST VLNYGAFSAF LREDENRIGR NGNGVGLNSS GNPSAKGKVK LESVLESATY ASKGHPFEVV YYPRAGTPEF VVKAGHVKAA LQICWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPMH WSDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPPRKK FRLPHHPDFP MDGQLPVPTF PGNFLGPSNP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG FPALDTTNTL PNRPSSSLSY HKPGSNENIS CLLTMGNTNQ SVKKSDVTKP HHFVLFGKPI LTEQQMSLSR SVDTVSPVPT GNSSSEGNVD KAGNVSDGSG SGPNQDRSSM ERLPWLKDNR PELDLELETG HCKVFMESED VGRTLELTLL NSYEELCTRL ANMFSIETSD MLNRVVYRDS AGSSKQIGDE PFSEFAKRAK RLTILMDSSS DNTGA // ID A0A0K9R1E5_SPIOL Unreviewed; 909 AA. AC A0A0K9R1E5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_123070 {ECO:0000313|EMBL:KNA12754.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA12754.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA12754.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA12754.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ154678; KNA12754.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 773 858 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 909 AA; 101265 MW; 6B0825F87A0DFAD0 CRC64; MRLSSSGFPH QPEEGEKKVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPAQLICQLH DVTMHADVET DEVYAQMTLQ PLTLQEQKDV CLLPAELGTP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELMA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAST NSRFTVFFNP RASPSEFVVS LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPARWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPS GLPSFPVMKD GDMGLNSPLM WLQREVGDRC MPSLNFQGYG LTPWMQPRLD PALLGLQPDI FQTMASAALQ DSRGLEKRPN QSLLQFQPNQ NMSCQPSSLT NQLLQQAQSQ QTLVQNFHEN PTVAHNQVQG QLLQQQLQNC RAYGDHQQQQ QLPHFEQLRN QFSDQQQIPK IVSKTPPFGS STQALPTSLE SISSSCPQQI FSNSIMNTAS DISPMHSLLN SFSQDGGSRQ NLFSQDAGSR DSRQINIPNS NPLASSSPLL SKRVAAEPQH SSSTAPCSLP QVEELGGPQT RISDLSSLLP PLPGREFSMY HGIGDPQNNM LFGVNVQQNE LANIRSNNNE NDSLSMPFAC SSFSSAAGSD FPPASDMMTS SCVDESGFLQ SSENDDIANP PSRTFVKVQK SGSLGRSLDI SKFSSYQELR SELAHLFGLE GQLEDPVRSG WQLVFVDREN DILLLGDDPW QEFVNNVWYI KILSPQEVQQ MGKEGLDLPN SILRAKHQNS FNSCDDYTIQ QDLRHNNSNG MASVTSLDY // ID A0A0K9R263_SPIOL Unreviewed; 420 AA. AC A0A0K9R263; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA13590.1}; GN ORFNames=SOVF_115280 {ECO:0000313|EMBL:KNA13590.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA13590.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA13590.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA13590.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ152590; KNA13590.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 47725 MW; DBDCF4AC572F3A60 CRC64; MKELKTNIRN FKKKLSASPS KGLNYQQKQA KRGNIKSSVL RQAEELRSRL EAIYPSFTKP LLKSHVAGCF WMGLPNPFCK MYLPQRETYF TLEDENGNKY GAKYLAAKTA FSGGWRRFSL AKKLSEGDVL VFQLVKPTKF KVYILRKCNV TEKTVTRVIQ NLPTEVVRND QEVGTLEQAI EAQRPSSLSA IAQDKDQEAP SKEHPQILQQ EKTSEIERTE LNSGKSKHLL FSASVDGNGI ASFEEFLIVI DDFLKNKYDL PHNIKCSYYE LCCSQGALLH NNNLMKGINP VLVAGSIIET VNVATAIKSC NLQTFNDEFS VWHVKLKSLK ILGMKVEFLV SRLEHLQRAA SDAEAAKNKQ QYLDLCSEHD VSESEIKDVE EKIRELVSVF DKCFDEIEGL KLEIENHESR FQKQVSALTF // ID A0A0K9R6S2_SPIOL Unreviewed; 228 AA. AC A0A0K9R6S2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA14502.1}; GN ORFNames=SOVF_107060 {ECO:0000313|EMBL:KNA14502.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA14502.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA14502.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA14502.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ150234; KNA14502.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 26448 MW; B595C624FEDDA601 CRC64; MQSIPKAFLE KELKGYKPIE SVVLTTDYQP HRHWLVKVEG GRAFKEGWNE FCSHYGLKAG DFLVFAHQLN LMFQVSVFDP LTACHRSFSS SNHIIGSNTK RRGSKKLRSS YEISGKRRSS KANPSVKDQQ LSCRITLSFY AFTSTNVYLP KWFVRESGLE NRCCVIKLIG GEGKAWEVKL RYRKYDSQAF IKGGWKEFQA ANSLRPRDII CFQLLERGRW PIMNCYRK // ID A0A0K9R8I5_SPIOL Unreviewed; 1137 AA. AC A0A0K9R8I5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_094480 {ECO:0000313|EMBL:KNA15863.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA15863.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA15863.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA15863.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ147047; KNA15863.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1069 1137 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 542 601 {ECO:0000256|SAM:Coils}. FT COILED 687 714 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1137 AA; 127111 MW; FFF711B975D1F25D CRC64; MKAPSNGLVA NPGEEGRAIN SELWHACAGP LVAVPPVGSL VVYFPQGHSE QVAASMQKET DGIPSYPNLP SKLICVLHSV TLHADPETDE VYAQMTLQPV NKYDRDALLA SEMALKQNRQ PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PCQELMAKDL HNQTWTFRHI YRGQPKRHLL TTGWSVFVSS KRLFAGDSVL FIRDEKSHLL LGIRRANRQQ PALASSVISS DSMHIGILAA AAHAATNNSP FTIFYNPRAS PAEFVVPLAK YNKAMYTQVS LGMRFRMMFE TEECGVRRYM GTITGINDLD SARWKNSQWR NLQVGWDEST AGDRPGRVSI WDIEPVVTPF YICPPPFFRP KFPKQPGMPD DDSDMDSIFK RGMPWLGDEY GMKDVPSSIF PGLSLVQWMN MQHNNQVPGA QPGIFPSMLT ASAMNGGLGT DDPSKLLNFQ APNMSMPNLQ FSKAVQQNQV GQLQQQSANW SQQQQQQLQQ LLQNPLNSQQ QQQQQQPQQQ PQQQQSLQQQ LQKQQIQQQQ QHQQQQHHHQ QLQQQQQQQQ QQQLQQQQQH QQQLQQQQQH QHQQQQQHQQ HQQQQQQQQQ QQHQQQQAQP ASHPAPQKQQ IPQSTFVNSG LISPNQNINQ NLPQSPMFSQ LHHQQLLGGN TQGPPNLPAD SLHLTSLTPD MQFQQQTEQQ SNVLQRLQQQ QQQQQAQMQQ SSQQLLQESL SHRSSPALQS LSEHQLQLQL LQKLQQQPQQ HSQQQQHQQH SQQSHPMLSP ISSHSHPQVT TQQHTAQSNQ HLQQRPSSQY QPTQQVGVGV GVGVGVGVSS ISTSPLMNSP AVSAVQLQGM QKTGGIVRSL SGPTDGDAPS CSTSPSTNNC QIPHSNFLNR NQQARNMLVE HSITEPSSNM VQDLQQEKSD MRIKNEISTS KVIEPPRING GIITDPLEAS SSVTSYGLDA SGLHQNLSLP SFGLDGDVQS HPRHNSLPIS TAMDDLTTDS FLSRGFDSGK ELHNLLSSYN GAPTPRDIET ELSAAGMSPQ SFGVPNIPFK SGCSNDVAAI NDPAGLGGGM WPSQAPRMRT YTKVQKRGSV GRSIDVTRYK GYDELRLDLA RMFGIEGQLE DPQRTDWKLV YVDHENDILL VGDDPWE // ID A0A0K9R8S6_SPIOL Unreviewed; 648 AA. AC A0A0K9R8S6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_094090 {ECO:0000313|EMBL:KNA15895.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA15895.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA15895.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA15895.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ146985; KNA15895.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 523 616 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 648 AA; 71855 MW; 6B5C672E66312688 CRC64; MALQGIQQSG GQQEQDALYK ELWYACAGPL VNVPREGERV YYFPQGHMEQ LEASTHQGLD QQMPSFNLPS KILCKVAHIE LRAEPETDEV YAQITLVPER DQSEVSTPDP PVPDPPRCNV HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHR SEWHFRHIFR GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRLMRQLNN MPSSVISSHS MHLGVLATAA HAIQTGTLFS VFYKPRTSRS EFLVSVNKYL EAKSHKLSVG MRFKMRFEGD EVPERRFSGT IVGVNDSPSS TWANSEWRSL KVQWDEPSSI VRPERVSPWD LEPLVATNSS NSQPTQRNKR PRPAMMPCSA TATDLSGLGI WKSTSESPVA ACSEIERARD QFSSVTKVGS VGFTANSSLP AISSQSIYWS QRADNVSESL GSVVNKESGE KRKSSAAGCR LFGINLDETS TRVGEDQPVP SLEAESDRSN VNRSDVPSSG GDPDKSSPSK QSRTCTKVHM QGVAVGRAVD LTRFDCYEDL LKKLEELFDI KGELCCSSGR WQVVYTDDED DMMMVGDDPW EEFCSMVRKI FIYTSEEVKR LSPKSKMSVE EEAKPGYTGD AGLPAASEEQ SSAVGPSS // ID A0A0K9RB30_SPIOL Unreviewed; 216 AA. AC A0A0K9RB30; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA16214.1}; GN ORFNames=SOVF_091120 {ECO:0000313|EMBL:KNA16214.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA16214.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA16214.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA16214.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ146357; KNA16214.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 120 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 216 AA; 25043 MW; 9A7F7F803D26D447 CRC64; MLMEFYSLGY GHFLVFRFDG CLPSQFHVLI FNKTATEIDY PLRRTPPLNS NRKLKKEYRT QEANDDDDDE SVINNLDSSD SDNNVKCSSI KEKGYDRISP EARKNLKKKL SVIKSEYPNF KTIMYPTHVR YRYNLGVNFS HASTYFARDK SDKVILKGPN GKNYRVGLYL NQTTAKFTDG WKDFVVDNGL NVGDGCMFEL VKRPPNNVYQ VSIFRI // ID A0A0K9RBF7_SPIOL Unreviewed; 505 AA. AC A0A0K9RBF7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA16344.1}; GN ORFNames=SOVF_089920 {ECO:0000313|EMBL:KNA16344.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA16344.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA16344.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA16344.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ145978; KNA16344.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 345 439 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 345 439 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 505 AA; 57698 MW; FCD08E97B6B5B371 CRC64; MESDGSHKQL NKPSSVTRSE MGNKPKHSSN KASFIKVLGR DFAKQLQLPE EFTANMNGYV PHRFIIESGM TRKCWRVEVE KDEDGRMYFR DGWADFVEAH SLGVGNFLLF EYEEQSIFQA RIYGRNGCER TITADNNKGG QSQPPKPIDV DDGEESEALE YEPVLEKCHR KKPSRLAPRK YGRGIYKKKL GVPRPYRRTA QVSLSEKNLS FSIIIHYSKN HQFYQLTIPK IVSLKMKLPS RDDLKFQDAE GKCWTVTLGH RRDGRAILCH GWKEFMKENK ISHGDKVQFE FVSDELVRFH VTKASEADKH QSDEETGSLN MDSKHNDKPI EARMSAKKNS SESGTSFSLI WKEACNRSYL YMPKSVVRAQ NMKNKESVVL RDPEGKCWPL EVKKITGDRI VVARGWAEFW KGYGISNGDL LEFKFASEYL IHLNIKPSTM TPLEPDVEDA VVCYNEEALA IEPGAVITRE EFDAAIQPTE EAVVMQEEFA AATTTNQPEV NDIIY // ID A0A0K9RET4_SPIOL Unreviewed; 401 AA. AC A0A0K9RET4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA17993.1}; GN ORFNames=SOVF_074780 {ECO:0000313|EMBL:KNA17993.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA17993.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA17993.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA17993.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ142902; KNA17993.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 287 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 287 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 251 278 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 401 AA; 46228 MW; 49D5E7CED2033912 CRC64; MLGGEGSNNA RTREENMYWR SFTPFFKVNL HADFRSGVEI PLYFSENVKK KLPQKVALKG PGVDFDTWEV QLKMHNNATW VVGEGWEDFA AAFSLEENDT LVFKYKNNSY FKVRIFSGKT SCERESSHFV IKSVSQQTKE SRSKVEKPCT VKKQETEIGL AISGSEREKK INDDQESILR ESVEKTVLIE VDDDSDDDAP TSTRIFKRKV DSGICNKSSK ETKLAFQRAV KPKIETEGEY ISPLRGPPEC NQEKEREIQR ASQRLKEIRK TWQQAKETQR FTEKSFCVSL SRTHVSGKTV KLGIPKQWWT EVIKSKGSPT HLRLRVKGND EYDPRLYGCR YDNSNCSGRI TTGWKKFVED NSLCQHDCCV FSLAEPFEDN NEIVYLEVEI IRVITLYEDS D // ID A0A0K9RF49_SPIOL Unreviewed; 509 AA. AC A0A0K9RF49; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA18098.1}; GN ORFNames=SOVF_073880 {ECO:0000313|EMBL:KNA18098.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA18098.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA18098.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA18098.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ142711; KNA18098.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 175 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 466 493 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 509 AA; 57178 MW; 848832CDEDECA569 CRC64; MKNSAISKAE LKMELVTRRL AMLQAHHHDI VPVLSEVNPI RVISNAESHP LQCESAKPFM DTSDDTLSEE VLIPKSSKNR ITSESHKRAR VISDDESSED EEHMVTIPPR KKGRTKQERI KMNDSSNSKN VKGIDNPTRR KIMDLTEPSS MGDKSSSMKR AEEIQANLAA ENPSFVKSML KSHVTGGFWL GLPRKFCDEH LPNCDCTIVL VDEAGKEFNT VYLARKTGLS GGWRGFSIYH TLLEGDVLIF HLIAPMKFKI YIIRDQNFGE VDGALGLLNL ELGVCEQKSD DLTQRVLQIE DNYTSVDHLS QSSSDLDLGS EVLDGICFAH SSINFEGVNS FKNFNIVVDG RIIDSKFSDS TRQKYYELCC SQKSFLHEHI LKGFNCHLVV GIISETINIS DGIRSYKAGS ISHEDLQIWE KTLRGFEVLG MKVEFLCARI NKLLGHVVES DAADESNMLK ESMIKRAIVG ERMKALENKL TQLKETMEKI DLEMDAEITD NGKCMKTEG // ID A0A0K9RGX5_SPIOL Unreviewed; 511 AA. AC A0A0K9RGX5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA18097.1}; GN ORFNames=SOVF_073880 {ECO:0000313|EMBL:KNA18097.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA18097.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA18097.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA18097.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ142711; KNA18097.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 175 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 468 495 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 511 AA; 57364 MW; 12B0DB885EE7D378 CRC64; MKNSAISKAE LKMELVTRRL AMLQAHHHDI VPVLSEVNPI RVISNAESHP LQCESAKPFM DTSDDTLSEE VLIPKSSKNR ITSESHKRAR VISDDESSED EEHMVTIPPR KKGRTKQERI KMNDSSNSKN VKGIDNPTRR KIMDLTEPSS MGDKSSSMKR AEEIQANLAA ENPSFVKSML KSHVTGGFWL GLPRKFCDEH LPNCDCTIVL VDEAGKEFNT VYLARKTGLS GGWRGFSIYH TLLEGDVLIF HLIAPMKFKI YIIRDQNFGE VDGALGLLNL ELGVCEQKSV SDDLTQRVLQ IEDNYTSVDH LSQSSSDLDL GSEVLDGICF AHSSINFEGV NSFKNFNIVV DGRIIDSKFS DSTRQKYYEL CCSQKSFLHE HILKGFNCHL VVGIISETIN ISDGIRSYKA GSISHEDLQI WEKTLRGFEV LGMKVEFLCA RINKLLGHVV ESDAADESNM LKESMIKRAI VGERMKALEN KLTQLKETME KIDLEMDAEI TDNGKCMKTE G // ID A0A0K9RH15_SPIOL Unreviewed; 375 AA. AC A0A0K9RH15; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA18770.1}; GN ORFNames=SOVF_067720 {ECO:0000313|EMBL:KNA18770.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA18770.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA18770.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA18770.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ141489; KNA18770.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0022891; F:substrate-specific transmembrane transporter activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR020846; MFS_dom. DR InterPro; IPR005828; MFS_sugar_transport-like. DR InterPro; IPR003663; Sugar/inositol_transpt. DR Pfam; PF02362; B3; 2. DR Pfam; PF00083; Sugar_tr; 1. DR PRINTS; PR00171; SUGRTRNSPORT. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS50850; MFS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 247 268 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 288 310 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 317 336 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 340 MFS. {ECO:0000259|PROSITE:PS50850}. FT DOMAIN 4 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 43876 MW; D0D579B898DFB4C5 CRC64; METYFYKIMV CPSTQTKELK IPKEYVTKYG KQFAKSDVKL QVSDGSVWRV KVLKENDKVR LTKGWEKIVE TYSLKYGNFL LFKFDKRDSM FHLTIFDPPG YEIEFDQQLV QISSESEQME IDHITDYDDD IVSSDIYEEG DSVDLDEMNV RKRYEAFEPK NPHFKLVMTP NTVSKGYRIS VPIKHVREHL KPWNRELILK AGGREKRFHV KLLMYPNNNQ APLGRGWKLF VWENALRVGD ATNLPQWYAI VVVLFICIYV AGFAWSWGPL GWLVPSEIFP LEVRSAAQSI NVSVNMIFTF IIAQAFLPML CALKFGLFIF FAFFVVIMTI FIYFLLPETK NVPIEEMNLV WKNHKFWGHF IPEDVVTPEM PVLKA // ID A0A0K9RLB1_SPIOL Unreviewed; 348 AA. AC A0A0K9RLB1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA20298.1}; GN ORFNames=SOVF_053590 {ECO:0000313|EMBL:KNA20298.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA20298.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA20298.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA20298.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ139116; KNA20298.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 200 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 200 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 38782 MW; 5701993265D180E4 CRC64; MNHFSLNLPS SDTLWYTPTT MEHHPKSLPF FYHSSLSLSS KHDDVDSDNS STNNIAATNA IDRSETTSSS PSSADQEYMF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLAG SSTVDSSTSS VGDKSTGGVG GGGVLLGFED ESGKCWKFRY SYWNSSQSYV LTKGWSRYVK EKKLDAGDVV LFQRHRLESD RFFIGWRRRG SAPLSQSNPV RYNNNNNNNN NNNNGQNYGV VQSQSYNGAP QQHQIASFPS YRPDVLHTGT EVRQKGRKSG GGNSKSVRLF GVNLECQIDG EQEEDEEAQT SDGSSQGQGQ VFGVGPPAYN YFDYVNNNHY PSSHMDMNYP QDVNQMRM // ID A0A0K9RMQ1_SPIOL Unreviewed; 488 AA. AC A0A0K9RMQ1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA20800.1}; GN ORFNames=SOVF_048930 {ECO:0000313|EMBL:KNA20800.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA20800.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA20800.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA20800.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ138260; KNA20800.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 157 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 157 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 488 AA; 54001 MW; B408C842705D8B7D CRC64; MDYTPSSSTI WNGSPTQIEA TTTTSAMMRN VEEEDDEGNN KSVVIIEREH MFDKVVTPSD VGKLNRLVIP KQHAEKHFPL DSSNNEKGLL LNFEDRTGKS WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGEVGKDKLF IDWRRRPDNS SPGLLSYPLQ SYHHQYNHRS AAAGWGSSSN SNSPSSTFVL RSHPHSHPYP QPYPYPSPQG STVWDHQGTP HLSNMSLMNV LPSQSYPPRR GTGNNNTSGL GLGHYGYGYG YGNVVNPYPV TGSLIFLRSS PSSITTSSTS AVGAAAATSS VLLPVPESEV NHPYFHHHHH RQQGGGGTVM EVQREEPMVY ESVPVVQGKA AAKRLRLFGV NMECPISHQT HDFDILSSPL ASSSTPNHPS SHHHHHYHHP QQQKQQQQQQ QQHPTTMAIS MGPPSSSSSS SFPSSPSNQL LPLQLRSLQY HGTTSPTTPP EKGKSPTSSS SMSLDLDI // ID A0A0K9RMW9_SPIOL Unreviewed; 809 AA. AC A0A0K9RMW9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_048190 {ECO:0000313|EMBL:KNA20865.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA20865.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA20865.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA20865.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ138143; KNA20865.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 712 796 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 809 AA; 90399 MW; C08E767719839236 CRC64; MKLSTSGLGQ QGNEGGEKKC LNSELWHACA GPLVCLPTAG SRVVYFPQGH SEQVAATTNR DVDGQIPNYP SLPAQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD IYLPADFGIP SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELVA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAANT NSCFTVFFNP RASPSEFIIP LSKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHA DNIDDAANSL MWLRGQGGEQ GLNSMNFQSL GMFPWMQTRA DNLLPLGNQN QQYQALLSSN FQNLRGSDVL NPQMMQFQHP VQYLQQSTGQ IPMLQQQQQQ QQQLFHPSIA QQLLQGQSQV SKDNLPLPQR ILPQEYFKQN EGLANQQLCG SEAYSLSNNE MQSRQQHHTM SSSLGKADTS TANAELPSQS PVQNMMSSTR TEGISSLSDM SNVNHTMLNE QTSQHPMVSL NSYTPINAFG DAVSLPPYPG KDASLETGNC SLDVQNHNVF GANLDSSGLV LPMTMPTTYR NSSHDTDLCS IPSGFHNPMY GCNSNSPELH SEGQGDLQTP TRTFVKVYKS GSVGRSLDIS RFSSYHELRE ELGQMFGIEG KLDDPLRSGW QLVFVDREND VLLLGDDPWE AFVYNVSYIK ILSPEDVQKL GKHGTETYS // ID A0A0K9RN02_SPIOL Unreviewed; 815 AA. AC A0A0K9RN02; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_048190 {ECO:0000313|EMBL:KNA20863.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA20863.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA20863.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA20863.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ138143; KNA20863.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 718 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 815 AA; 90931 MW; C4CA7D8FDC622DC4 CRC64; MKLSTSGLGQ QGNEGGEKKC LNSELWHACA GPLVCLPTAG SRVVYFPQGH SEQVAATTNR DVDGQIPNYP SLPAQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD IYLPADFGIP SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELVA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAANT NSCFTVFFNP RASPSEFIIP LSKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHA GTSSLSDNID DAANSLMWLR GQGGEQGLNS MNFQSLGMFP WMQTRADNLL PLGNQNQQYQ ALLSSNFQNL RGSDVLNPQM MQFQHPVQYL QQSTGQIPML QQQQQQQQQL FHPSIAQQLL QGQSQVSKDN LPLPQRILPQ EYFKQNEGLA NQQLCGSEAY SLSNNEMQSR QQHHTMSSSL GKADTSTANA ELPSQSPVQN MMSSTRTEGI SSLSDMSNVN HTMLNEQTSQ HPMVSLNSYT PINAFGDAVS LPPYPGKDAS LETGNCSLDV QNHNVFGANL DSSGLVLPMT MPTTYRNSSH DTDLCSIPSG FHNPMYGCNS NSPELHSEGQ GDLQTPTRTF VKVYKSGSVG RSLDISRFSS YHELREELGQ MFGIEGKLDD PLRSGWQLVF VDRENDVLLL GDDPWEAFVY NVSYIKILSP EDVQKLGKHG TETYS // ID A0A0K9RNC1_SPIOL Unreviewed; 1813 AA. AC A0A0K9RNC1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA21015.1}; GN ORFNames=SOVF_047100 {ECO:0000313|EMBL:KNA21015.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA21015.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA21015.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA21015.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ137967; KNA21015.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR021325; CCB2/CCB4. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR017451; F-box-assoc_interact_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF11152; CCB2_CCB4; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR TIGRFAMs; TIGR01640; F_box_assoc_1; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 337 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 337 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1813 AA; 204195 MW; 7AB04AD8628D956C CRC64; MGILTGNQLV PLSLAFPIRA NPNYHLHDIV RLVTPLKTRR NSRKSLKLSA KLDDSSSPTN SQQQLNLSVL RFTFGISWLD ESYLPRWIGY GFGSLVILNH FVGSSSPVTS AQLISEALGL SLAAFSVTLP YMGRFLKGAA PEELASLPQR AEQVFVMSHN VSDTLKEDLA WTTYILLRNT KSVSVLISLQ DVICVRGYWN LPENLSKDEI LNWFMGKIRK NGLSDVKETL YFPQSTGSVL KEAIPEETGS ILVQPLCSSE AQGKGNENDV GFVLVASGVS YAYDEKDKLW IKAIANKFKV RCLQLCQMDC KVDPSGECSR NGLLIHREKH GLSPRIPPFF KVMFGKNFSQ HLFVPPKFSE LLRSSVGEKA YLEDSTGQKW AVALSDVLGS LAFQKGWDEF TKDHGLELGD FLLFRYTTES CFFVEIYGRD GYEKTYPGVQ SFKNKIPKTT SNSITRKSPS DPLYEKRKPS QENDRSNVCA VSRSKVDISD NIRIHDDVND VQNSLVVEEN VQSQEFSIER PQLVPKVDFL VEPCFLIDRE TSFSREDDRE RLFDLSALEL PGIKPSFTSK KAGAFHEAHT GDASIDTKNS PLIGALHEAH TGDASIDTNK SPLIQGAFHK AHTGDATIDT KKSLLIQENV VPSKNYEDKS EVQINEDEPK SGDPILEQPS KASSSSKEVE DDEGNQIPYR DNDNMMPSSS NNVELTFMMG PHIKPSTTTE VTRTNDIPSF LEENDNVIPE SMNNDEETLI PHGKPSSIIP PSKKWGRLKS TISKIVAKKK TGGKWVPGGP SKPSLAEGDS RAKKKAYPVL VKELVDELCS IRRDWIADAG FWSISDPKVE FRVEPCFPTN RETSFAGKDD RERLFNLSAL ELPDMKPSFT SKKAGAFHGT HTGDASINKK QSPLIISAFH EAHTGDSSID TNKSALLQSA SHNAHTGDAS IDKNKSPISL GAFHEAHTGD ASIGTMKTPL IQENVVPSKN NEEKLPSSVS KPFLSVSPSL NLCSRSVPPS KTIRESHTCE PSAASGFSQP PGNSEENSEV EMQINEDEPK SRDPILEQSS KVSSSSKEVE DNEGSFHGDN DNVRLSSSNI AEQTFVMRPH IKPSTTKEVT NTHDISSFPE ENDNVIPVSM KNDEETLIPH GKPSTTAQDL ATPLNGGPVI HNNPPSKKRG RPKKIISEIE AKNKTPGKWV PGGPGRPPLG QGESKAKMQH SALRTYPGLV KELVDELCPI RRDWVVGAGF GSILDLKITK VNRYFMTWLE GRWDWKRQVL RIREDYEIVI DEKMISWITG VPIGSYNFPK RRTENKELTQ LEKEYYGKKG IDYVRVYNKC LLELDDKDVF LRHFVLLTFG SLFCMNKCNF ITPKLLSILK KEYITDPSEW NWCGFLYDWI AGHGKEQGKA SALILLIAYL DRIKYTATSR SWKTDSPRIG AWQTEDLIEV IAQDMGPDGS FGHSEVVRDV VYGEPYPVGK PLTPPPWFNR RGQNKVGKPI PSSNEALKVD NRPRILRNLR QRHHKIKTRF RQPEFFSLRY DQTNYDVEDF VPLAYEIGDR RPRLVGSCNG LVCLIVYPHN FQEFLTISNP ATHRDRKIML PDGKQRAWRS WCQFYYDSST DEYKIFGVFS ASRRDSNIMV PDDDYFYVNF HVFSGNTGIW TRVDNLDKRF RVREIRKTVL VHDTIYLLVW KSPVDVFAFD LITDQLKPFP LMNCLRKYKG VEMLELRGCL SLICSPKRFD FDVWMLKQPS DENSWQKSFS FSSKIIKPYS ISKTGMCLVH TDGRFYVCDP SRETLQLSQR GIAFENNDFY VSVDYIESLV SPF // ID A0A0K9RPH0_SPIOL Unreviewed; 633 AA. AC A0A0K9RPH0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA20732.1}; GN ORFNames=SOVF_049650 {ECO:0000313|EMBL:KNA20732.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA20732.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA20732.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA20732.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ138361; KNA20732.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 264 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 602 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 264 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 509 602 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 633 AA; 70485 MW; 5C6169D16E28CDF6 CRC64; MMTKRMPHFL EVFLPNLSSE RLKVPSKFVE HLESRTSGSF TLIGPSGNIW HVDLIEINGH LYFRDGWSTF VNDHSLQCGD TLIFRYNWDS NFNIQIFDQS SCEKDEAFYA NCSQEASECN ENLGRKRERE TEASMLNLVA DKKIKGSWMP VHLELPAGNR EQKSNMSTKK SQKFKETTSG CDNMTKIIAK ASDNEIVLAM PSLNGPDRMT SAVNFKVMNI SSKVKKSKKS SKKDQRTDIQ KMASISKFVQ SRVAHHFTST FPYFARVMCY SNISGNGTMK VPTHFSTAHF PKSRIKVTLM NLNGDCWMVN SIPTMKRQTT LHTLCGGWLA FVRGNSIKIE DVCIFELMGD FEMRVHVQRH GLEGLGCQIE SNSVDVEGFG LGGRHLETAE NVAQDTGARL LKDTDQTNEP CTTPNEKYRN ITDELPYMQQ EAASSACTVD DSTAVQVPAC ASASSTGTSY DFTPDKHLVC HAGGTMSYQT SGNNQVMHMQ PTAGEGSYAP SFTSPFPSFM KVMTSSNVGG SFTMAVPNKF AAEYLPSCKA EVVLCNLRGD SWNVIAARYG QRTKFYGGWM SFVTMNDVKL EDICVFELLD ERVLQVRVFK GSHKGPECVY DEVIADDSTA SVESTECGVL PDT // ID A0A0K9RPP2_SPIOL Unreviewed; 812 AA. AC A0A0K9RPP2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_048190 {ECO:0000313|EMBL:KNA20864.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA20864.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA20864.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA20864.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ138143; KNA20864.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 799 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 812 AA; 90631 MW; DAD3352589CEC633 CRC64; MKLSTSGLGQ QGGEKKCLNS ELWHACAGPL VCLPTAGSRV VYFPQGHSEQ VAATTNRDVD GQIPNYPSLP AQLICQLHNV TMHADVETDE VYAQMTLQPL SPQEQKDIYL PADFGIPSRQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDYSQQP PAQELVARDL HDVEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAANTNSC FTVFFNPRAS PSEFIIPLSK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWHAGTS SLSDNIDDAA NSLMWLRGQG GEQGLNSMNF QSLGMFPWMQ TRADNLLPLG NQNQQYQALL SSNFQNLRGS DVLNPQMMQF QHPVQYLQQS TGQIPMLQQQ QQQQQQLFHP SIAQQLLQGQ SQVSKDNLPL PQRILPQEYF KQNEGLANQQ LCGSEAYSLS NNEMQSRQQH HTMSSSLGKA DTSTANAELP SQSPVQNMMS STRTEGISSL SDMSNVNHTM LNEQTSQHPM VSLNSYTPIN AFGDAVSLPP YPGKDASLET GNCSLDVQNH NVFGANLDSS GLVLPMTMPT TYRNSSHDTD LCSIPSGFHN PMYGCNSNSP ELHSEGQGDL QTPTRTFVKV YKSGSVGRSL DISRFSSYHE LREELGQMFG IEGKLDDPLR SGWQLVFVDR ENDVLLLGDD PWEAFVYNVS YIKILSPEDV QKLGKHGTET YS // ID A0A0K9RQ26_SPIOL Unreviewed; 1785 AA. AC A0A0K9RQ26; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 15. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA21014.1}; GN ORFNames=SOVF_047100 {ECO:0000313|EMBL:KNA21014.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA21014.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA21014.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA21014.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ137967; KNA21014.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR021325; CCB2/CCB4. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR017451; F-box-assoc_interact_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF11152; CCB2_CCB4; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR TIGRFAMs; TIGR01640; F_box_assoc_1; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 337 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 337 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1785 AA; 201236 MW; 912FF0D3B1BE2A2C CRC64; MGILTGNQLV PLSLAFPIRA NPNYHLHDIV RLVTPLKTRR NSRKSLKLSA KLDDSSSPTN SQQQLNLSVL RFTFGISWLD ESYLPRWIGY GFGSLVILNH FVGSSSPVTS AQLISEALGL SLAAFSVTLP YMGRFLKGAA PEELASLPQR AEQVFVMSHN VSDTLKEDLA WTTYILLRNT KSVSVLISLQ DVICVRGYWN LPENLSKDEI LNWFMGKIRK NGLSDVKETL YFPQSTGSVL KEAIPEETGS ILVQPLCSSE AQGKGNENDV GFVLVASGVS YAYDEKDKLW IKAIANKFKV RCLQLCQMDC KVDPSGECSR NGLLIHREKH GLSPRIPPFF KVMFGKNFSQ HLFVPPKFSE LLRSSVGEKA YLEDSTGQKW AVALSDVLGS LAFQKGWDEF TKDHGLELGD FLLFRYTTES CFFVEIYGRD GYEKTYPGVQ SFKNKIPKTT SNSITRKSPS DPLYEKRKPS QENDRSNVCA VSRSKVDISD NIRIHDDVND VQNSLVVEEN VQSQEFSIER PQLVPKVDFL VEPCFLIDRE TSFSREDDRE RLFDLSALEL PGIKPSFTSK KAGAFHEAHT GDASIDTKNS PLIGALHEAH TGDASIDTNK SPLIQENYED KSEVQINEDE PKSGDPILEQ PSKASSSSKE VEDDEGNQIP YRDNDNMMPS SSNNVELTFM MGPHIKPSTT TEVTRTNDIP SFLEENDNVI PESMNNDEET LIPHGKPSSI IPPSKKWGRL KSTISKIVAK KKTGGKWVPG GPSKPSLAEG DSRAKKKAYP VLVKELVDEL CSIRRDWIAD AGFWSISDPK VEFRVEPCFP TNRETSFAGK DDRERLFNLS ALELPDMKPS FTSKKAGAFH GTHTGDASIN KKQSPLIISA FHEAHTGDSS IDTNKSALLQ SASHNAHTGD ASIDKNKSPI SLGAFHEAHT GDASIGTMKT PLIQENVVPS KNNEEKLPSS VSKPFLSVSP SLNLCSRSVP PSKTIRESHT CEPSAASGFS QPPGNSEENS EVEMQINEDE PKSRDPILEQ SSKVSSSSKE VEDNEGSFHG DNDNVRLSSS NIAEQTFVMR PHIKPSTTKE VTNTHDISSF PEENDNVIPV SMKNDEETLI PHGKPSTTAQ DLATPLNGGP VIHNNPPSKK RGRPKKIISE IEAKNKTPGK WVPGGPGRPP LGQGESKAKM QHSALRTYPG LVKELVDELC PIRRDWVVGA GFGSILDLKI TKVNRYFMTW LEGRWDWKRQ VLRIREDYEI VIDEKMISWI TGVPIGSYNF PKRRTENKEL TQLEKEYYGK KGIDYVRVYN KCLLELDDKD VFLRHFVLLT FGSLFCMNKC NFITPKLLSI LKKEYITDPS EWNWCGFLYD WIAGHGKEQG KASALILLIA YLDRIKYTAT SRSWKTDSPR IGAWQTEDLI EVIAQDMGPD GSFGHSEVVR DVVYGEPYPV GKPLTPPPWF NRRGQNKVGK PIPSSNEALK VDNRPRILRN LRQRHHKIKT RFRQPEFFSL RYDQTNYDVE DFVPLAYEIG DRRPRLVGSC NGLVCLIVYP HNFQEFLTIS NPATHRDRKI MLPDGKQRAW RSWCQFYYDS STDEYKIFGV FSASRRDSNI MVPDDDYFYV NFHVFSGNTG IWTRVDNLDK RFRVREIRKT VLVHDTIYLL VWKSPVDVFA FDLITDQLKP FPLMNCLRKY KGVEMLELRG CLSLICSPKR FDFDVWMLKQ PSDENSWQKS FSFSSKIIKP YSISKTGMCL VHTDGRFYVC DPSRETLQLS QRGIAFENND FYVSVDYIES LVSPF // ID A0A0K9RQW4_SPIOL Unreviewed; 692 AA. AC A0A0K9RQW4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_038740 {ECO:0000313|EMBL:KNA21930.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA21930.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA21930.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA21930.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ136475; KNA21930.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 692 AA; 76787 MW; D42E5A68035F56B7 CRC64; MMGVLIDLNT VNEDEEDNNS NISNNNYNYQ NTLQNHLQNS SSSVCMELWH ACAGPLISLP KKGNLVVYLP QGHLEEHHQQ NNLPGFDFSR GINSNNHNFD SHQSNIPPHV FCRVLDVKLH AEVATDEVYA QVSLIPESQI EEKLKESEAD IEGDEEDFED LVKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL VAKDLHGLEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD DGELRLGIRR AVQLKGSGSF PALPTRPMSN NSVSAALDAV SSGRVFNVCY NPRASSSEFV VPIRRFLKSL DTSFNVGMRF KMRFEAEDAG ERRYTGVVTG MAELDPVRWP GSKWRCLMVR WDDVEVNRHG RVSPWEIELT GSFPSPSSIM ASGLKRSRIG LPLSKPEFPI PSGVGMADFG ESMGFRKVLQ GQEKLGCRSA CDGNDNPHLP PSDPGRRFHS SVPPGEFGRT AKGGIGFRES FRFQKVLQGQ EIHHLSPAHL DGLTSSLNRG GHEGCGGPLE IYEGVQVPNS CGTGWLKAQV SSPSSILMFP HPSIQQQARS SFRPPMSQPR LMNYSGVPAA YNFLSKASDE LVPSGKASCR LFGFSLTEGE HDHRVDNERK HSNSFQPPES SFWPLVEGQP CYKSPSVNKV GSNCPGTNDL YAVRDMLLDI AL // ID A0A0K9RS36_SPIOL Unreviewed; 223 AA. AC A0A0K9RS36; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA21719.1}; GN ORFNames=SOVF_040840 {ECO:0000313|EMBL:KNA21719.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA21719.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA21719.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA21719.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ136787; KNA21719.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 223 AA; 25708 MW; D42165A4C0CE2040 CRC64; MAKGANYEDG RKKRVEEIKK KMAELNLHKL AQSLKPSPKK THHSAPVKRK ARLSDFGAEI VRRSSRMADK PPPNYKESAM EPLREGRRTY SYQRRDLLNR VYASDKDRVH AIERAEELEQ DLGTEFPAFI KPMLQSHVTG GFWLSFPNSF CKTYLPDSDE MFTLVDEEGD EWQAKYLARK NGLSGGWRGF SIEHELVDGD ALIFQLIEPT IFKVYIIRVN SSD // ID A0A0K9RU71_SPIOL Unreviewed; 201 AA. AC A0A0K9RU71; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA23086.1}; GN ORFNames=SOVF_028090 {ECO:0000313|EMBL:KNA23086.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA23086.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA23086.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA23086.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ134752; KNA23086.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 201 AA; 22925 MW; E0CB71708F527AD4 CRC64; MGSSEEKLPE FFKTFRPDHY SETMKIPDAF LEHLSTKIPK KVILKNCFDD HWPVGIVENE DGLFFQEGWS KLVSDYPLLG GEFMVFKYDG YSTFEIRTPN TSHFKKQPVT GCFAGQEEAK TPTEEDNEDE EDLVVDQAEN SAIRKNLGRG GNYSFTGYHV KNLGKGITDL FPSNNPFFVT KIRKNDGRKD LVLFFSPCNL A // ID A0A0K9RV24_SPIOL Unreviewed; 229 AA. AC A0A0K9RV24; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA23323.1}; GN ORFNames=SOVF_025870 {ECO:0000313|EMBL:KNA23323.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA23323.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA23323.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA23323.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ134419; KNA23323.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 229 AA; 25866 MW; CA786ECDA5C54FE1 CRC64; MGIGTTSYEK SREKRVEENK KRLDDLNLIH LSQALKNLSP KPTPMKKASK PRIMDKQIIQ VRRSPRVANN PAPVYAEISL PRFSSPRKNY GVVKARDFSN RVIASDDVRE YTIEEAEKLN AKLEEEGFPT LVRPMLPSHV TGGFWLGLPS WFCRKSLPRN DGMVRLVDED EIEYPVVYLA RKCGLSGGWK GFAECHQLVD GDAVVFQVLS HSIIKAYIIR GSSYDSGTD // ID A0A0K9RWT2_SPIOL Unreviewed; 276 AA. AC A0A0K9RWT2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA23971.1}; GN ORFNames=SOVF_020420 {ECO:0000313|EMBL:KNA23971.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA23971.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA23971.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA23971.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ133596; KNA23971.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 156 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 156 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 31973 MW; DD1A86230F69558D CRC64; MQPSFVEHNY SLGIPKEYVK RYLNKERPFN HAFNLQTDDT RKTWEVVIVA NSTHVKLREG WKCFALDNKL NVGDVCVFEL INKHEFKVRV FGVVNDMGKV EADEVKGVLT NVTQARVQTS MDDKVILARG CSLTPEEDKR VRAYASQCKK SKNPLFVTKM QPSFVEYHFR VSIPKEFGKK YLHKKNGHLI DRKFSLKTNT GRKTWPVTIG GIDQRARLKV GWKKFAIENK LKVDDICVFE LINKQEFQVG ILRVGNAKEN RRESDNHIIK TELMNS // ID A0A0K9RYJ9_SPIOL Unreviewed; 327 AA. AC A0A0K9RYJ9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA24596.1}; GN ORFNames=SOVF_014220 {ECO:0000313|EMBL:KNA24596.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA24596.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA24596.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA24596.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ132828; KNA24596.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 97 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 164 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 97 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 164 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37487 MW; 74148CACE2955F43 CRC64; MVSSIMTKTE ASDSNSSNSS QKRPNTVNKP SKQMGGSSRF KGVVYQQNGH WGAQIYANHH RIWLGTFKTE AAAAAAYDSA AIKLRHGNSS DAHRNFPLTT LTIHEPNFQA YYNTDQVLNM IKDGSYQIKF GEYLSSISQV SNAQTNNCYI NQNKQEGQYC QELFRKELTP SDVGKLNRLV IPKRYALKYF PVRDDNGRKF GVCEGEEGGD QAGDMELKFY DKKMKSWKFR YCYWKSSQSF VFTRGWNKFV RVKELEAKDI VSFYMCQFRE NDVGDVNKFW MIDIVKCTTT DENVDPKKKG EAVETKKEKG FKLFGVQVVP VNCHEDI // ID A0A0K9RYM0_SPIOL Unreviewed; 638 AA. AC A0A0K9RYM0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_019820 {ECO:0000313|EMBL:KNA24029.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA24029.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA24029.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA24029.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ133546; KNA24029.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 526 618 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 638 AA; 71308 MW; EA85FA584E08BE86 CRC64; MANSMAFGQP NLSPAFRDSA GGGDVLYPEL WRACAGPLVE IPRLGERVYY FPQGHMEQLE ASTNEELNQR IHMFNLPTKI LCRVMNILLL AEKETDEVYA QITLMPEADQ TEPRKPDPCQ PEPQRPAIRS FSKVLTASDT STHGGFSVLR KHANECLPPL DMTQQTPTQE LAAEDLHGYV WRFKHIFRGQ PRRHLLTTGW SHFVTSKRLV AGDSFVFLRG ERGELRVGVR RVARQQSSMP SSVISSQSMH LGVLATASHA INTNTFFVVY YKPRMSQFIV GLNKYLESVD NGFKVGMRFK MKFEGEDTPE RRFTGTIVGV DDLSPQWNES RWRSLKVQWD EPTSIARPDR VSPWEIEPFG SSSPSEVIDP VVKTKKPRPT IEIPGHASMS VNDSTPWNSS IDFAQGEIED CKSATAWSIF TGYTTPQSTK QNGDVTENGK KIETTASYRL FGIDLMKTST PTTIEEESMQ ELNGTGGCTE ENGRSLDSPV DSEQKSDLSK VSQEKKQVLP LASPRDMQTK QGSSTRSRTK VQMQGVAVGR AVDLTTLESY AQLIDELEEL FDIKGELQPR AKWEIVFTDD EGDMMLVGDD PWPEFCSMAK KLYICSSQEV KKMSARSKLP ASSLEGDGTV LSMESSGN // ID A0A0K9S097_SPIOL Unreviewed; 1069 AA. AC A0A0K9S097; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_009550 {ECO:0000313|EMBL:KNA25133.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA25133.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA25133.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA25133.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ131991; KNA25133.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 957 1041 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1069 AA; 118137 MW; 238840F2670DA45E CRC64; MKGTAANSAS QPSNNSPTEG EKKTINQELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA SLKKDVDAQI PNYTNLPAKL LCLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL SLKVHKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELVARDLHDT VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQHLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AIYGQQVSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERRNRVSVWE IEPVTAPFFI CPPPFLRPKR PRLPGMPDDE SDVDNLYKRT MPWLGDDPHA LSGLSLAQWM NMPQNQSFAN SMQGNYLNTI PGSTLPSLPG ATAELSRQLG FTAPQQNNLQ YNAQRPVQSV QQHDQLQKQS GALNPLSSLI QSQSQQQLYD VSQQNLNQNL SSSQVQSQLL QSQGLVQNHS SLQQPSSLQN HQLLGNLPPQ QQQTSGSSQQ PSLLQMQQVN NDNQMQFQLL QRFQQQQSLL SQHSVLQQTN HINQLQEPQH RSLLDVSQSF SRSLSSSQML DMPMASLPPS QIIPQQLSRS NSQTTLHFSQ TPQLPKLPEQ QSGIMPEMHG VALNPMSNHP STAVSSSFVR ATAGGQSAVT DDIPSCSTSP STNNGPNIPQ TTMNYRSYAL GEGINQSSAN VLSSNSLDTM SAHNSFKELH QKVEVKPSVN ISKVENQGHL TYQNIPMDYL DTSSATSVSL SQNDIINQNS SLCNPQSSLL GDTTGHDVEV QAADVRNNIH NGASINGQLG TSLVSDAILT KNVQRPDKNY SNNVSSGCML TTYENSKDAQ QELSSSMVTQ SFGVPDVAFN SIDSAISDGS FMNRGAWAPP PQFQRLRTYT KVYKRGAVGR SIDVTRYSDY EELKQDLARM FGIEGQMEDR GRVGWKLVYV DHENDVLLVG DDPWEDFVNC VRCVKILSPQ EVQQMSLDGD FGNASLQNQA CSSSDGGNV // ID A0A0K9S0M5_SPIOL Unreviewed; 307 AA. AC A0A0K9S0M5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA25273.1}; GN ORFNames=SOVF_008010 {ECO:0000313|EMBL:KNA25273.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA25273.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA25273.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA25273.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ131794; KNA25273.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 186 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 186 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 307 AA; 35880 MW; 58901FBAB3BB3326 CRC64; MARPVKRRRG RPFKYSASQL PPEFFKVYLP EHNSKQLVIP PDFIKNFMGK IPMEVILKNL KGEVWNVELE KAECKLLIKK GWEDFVIGNS LARGEFLIFT YKGNSMFTVK IFSINGCVKD DEPVVTNEQP HVKVKQEPNS DQIYSHETGA CEKTHLERSS TNNERLSQDL HEAVTKDVPE RTVESNKIRF TRVHKGKMYE LHIPSSIFRK YKIERPEIKR PEMVLLKYRR GISQTVKILG GRDRVLITSG WKEFKLKNKL VKGDEYEFEI SVGEGRKIKE IELLKILPRK TVTTRKRKKI TLRPRNS // ID A0A0K9S1S2_SPIOL Unreviewed; 1081 AA. AC A0A0K9S1S2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_009550 {ECO:0000313|EMBL:KNA25134.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA25134.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA25134.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA25134.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ131991; KNA25134.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 969 1053 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 144 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1081 AA; 119340 MW; D74DF8366E2D537B CRC64; MKGTAANSAS QPSNNSPTEG EKKTINQELW QACAGPLVNL PAAGTHVVYF PQGHSEQGFP DPPFPSSSSV AASLKKDVDA QIPNYTNLPA KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS DLSLKVHKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQHLLL GIRRANRQPT NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAIYGQQVS LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSV WEIEPVTAPF FICPPPFLRP KRPRLPGMPD DESDVDNLYK RTMPWLGDDP HALSGLSLAQ WMNMPQNQSF ANSMQGNYLN TIPGSTLPSL PGATAELSRQ LGFTAPQQNN LQYNAQRPVQ SVQQHDQLQK QSGALNPLSS LIQSQSQQQL YDVSQQNLNQ NLSSSQVQSQ LLQSQGLVQN HSSLQQPSSL QNHQLLGNLP PQQQQTSGSS QQPSLLQMQQ VNNDNQMQFQ LLQRFQQQQS LLSQHSVLQQ TNHINQLQEP QHRSLLDVSQ SFSRSLSSSQ MLDMPMASLP PSQIIPQQLS RSNSQTTLHF SQTPQLPKLP EQQSGIMPEM HGVALNPMSN HPSTAVSSSF VRATAGGQSA VTDDIPSCST SPSTNNGPNI PQTTMNYRSY ALGEGINQSS ANVLSSNSLD TMSAHNSFKE LHQKVEVKPS VNISKVENQG HLTYQNIPMD YLDTSSATSV SLSQNDIINQ NSSLCNPQSS LLGDTTGHDV EVQAADVRNN IHNGASINGQ LGTSLVSDAI LTKNVQRPDK NYSNNVSSGC MLTTYENSKD AQQELSSSMV TQSFGVPDVA FNSIDSAISD GSFMNRGAWA PPPQFQRLRT YTKVYKRGAV GRSIDVTRYS DYEELKQDLA RMFGIEGQME DRGRVGWKLV YVDHENDVLL VGDDPWEDFV NCVRCVKILS PQEVQQMSLD GDFGNASLQN QACSSSDGGN V // ID A0A0K9S2S2_SPIOL Unreviewed; 604 AA. AC A0A0K9S2S2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA26040.1}; GN ORFNames=SOVF_001070 {ECO:0000313|EMBL:KNA26040.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA26040.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA26040.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA26040.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ130758; KNA26040.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 498 594 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 498 594 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 68535 MW; 8658579B681579B1 CRC64; MEANRAMKPR RIEESSKKSP TFFYKLMVSP CQQSKKLRIP KKFTKAHRNE LCSQSILTVS NGETWKVKFI KEDNELSFSN GWKDFVEYFS ISLGYFLLFE YKGNSNFKVN IFDLTGFEIS YPCKKPEMLI TPSSSSKTGY GEVMQLSSED EDCVGDGDGD GDGDGEEEMD NARECNILGY PQWLKKCKGL INSLTAAGIS LPKKPFFVAS VKLYNLEGYL RIPEKFVRKF RKELSTTSIL KVPSGEAQKV AIVKEGNKLW FQNGWQEFVE YFSINYGFLI LFKYEGNSNF SVHIFDPTAC EISYQRHEPF PQELDDDDDD DDFDDDFDDG DDDDDKNSTE ILPSSAVNLR NSDAEVIQLD SDDEETNDVK EGNLFGCQNA YQTGKYNGIT NVVSTAAGIS SPERPSFVTD VRSYFVHGFK NDSKKPEILH TPSISSKTGY VEVIQPSSED EECVGDEEEM DNTRECTRLG YPLWLKKYEG LINVVTSAGI TLPKNPFFVA AMKVYNLKGG AYLNIPMGFG RVHIECEAMQ RKQIMLEASD GTQWEVDCVR NGRKCMFSRR WIIFARQIGL EVGDFCVFEL KGAKKKYVVI KVHVVKKLDI KSST // ID A0A0K9S375_SPIOL Unreviewed; 795 AA. AC A0A0K9S375; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SOVF_005380 {ECO:0000313|EMBL:KNA25587.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA25587.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA25587.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA25587.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ131391; KNA25587.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 669 751 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 795 AA; 88587 MW; 73B10AA99632ABC4 CRC64; MEIDLNHEVM SEVEKIAYGN GHYEGGTYGC SYSSSSSCSS NTSPSAGTSY MELWHACAGP LIFLPRKGNV VVYFPQGHLE QAVALSLFPP YPPMELPTYH LRPQIFCRVA NIQHLANKEN DEVYIQLTLF PLPELGRTYL GSKAEGLGDE EDATKLLPKS TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKLQR PSQELVAKDL HGVEWRFRHI YRGQPRRHLL TTGWSIFVSQ KNLVAGDAVL FLRGEDGELR LGLRRTLRPK SGLPDSVIGK HSMYPNVLSA VVNAVSSKTM FHVYYCPRAS HPAFIVPYHR YVKSISDPIS TGTRFKMRFE VDDSPDRRCS GVIIGVNDIN PYKWPNSKWR CLMVRWDEDI VSDGQERVSP WEIDPSVSLP PLSIQSSPRI KKLRLGLPAS LSSPVDCGGL GILDFEESVR SSKVLQGQEN VTYISPPYGC DKVNSMLDNV PGASGQQSLS SSRIPRINMS EFRSLAQPVN YTGFLESNRF PKVLQGQEIC PLRSFTGKMN FNPGAWLNPT LASTYFNGPK PSFYPLASEG TRNMYFPFDV YKSDLDSVTI PCENTMEKEN SAFGSSSFRT NVLSQKFMTP NVDNEHTSAK NLSLLNSLNA SDKDQKDGLD DGPRPNCKLF GFSLEQETSG TNSEIRSRRS CTKVHKQGSS VGRAIDLSKL KSYADLIIEL ERLFSMEEVL QDPAKGWRIL YTDKENDVMV VGDDPWNEFC DVVSKIHIHT REEVEKMTVG MMTDDNQSCL EEAPATLDAC KSSSVGQPDS SPSAT // ID A0A0K9S443_SPIOL Unreviewed; 297 AA. AC A0A0K9S443; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KNA26039.1}; GN ORFNames=SOVF_001060 {ECO:0000313|EMBL:KNA26039.1}; OS Spinacia oleracea (Spinach). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; OC Anserineae; Spinacia. OX NCBI_TaxID=3562 {ECO:0000313|EMBL:KNA26039.1, ECO:0000313|Proteomes:UP000054095}; RN [1] {ECO:0000313|EMBL:KNA26039.1, ECO:0000313|Proteomes:UP000054095} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Viroflay {ECO:0000313|Proteomes:UP000054095}; RC TISSUE=Leaf {ECO:0000313|EMBL:KNA26039.1}; RX PubMed=24352233; DOI=10.1038/nature12817; RA Dohm J.C., Minoche A.E., Holtgrawe D., Capella-Gutierrez S., RA Zakrzewski F., Tafer H., Rupp O., Sorensen T.R., Stracke R., RA Reinhardt R., Goesmann A., Kraft T., Schulz B., Stadler P.F., RA Schmidt T., Gabaldon T., Lehrach H., Weisshaar B., Himmelbauer H.; RT "The genome of the recently domesticated crop plant sugar beet (Beta RT vulgaris)."; RL Nature 505:546-549(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ130758; KNA26039.1; -; Genomic_DNA. DR Proteomes; UP000054095; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054095}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000054095}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 189 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 189 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 34208 MW; 53DA5F137BA5ABD6 CRC64; MNQIKQQLQQ QQQQNIIHAN SGERKPCFSF FKLFLSPISQ SNKLRIPDKF TRKFRKELSI TSILKVPSGE TQKVSIVKED NKLWFQNGWQ EFVEYFSIDY AFLLLFNYEG NSNFSVHIFD PTACEISYPL NLRNSDSEVI QLDSDDEDID DASEVNPFGC QKTYWIGKYA EMVNVVAAAG ISLPERPSFV TEIKPYALFR GLHLNISLPF ARDHIKCMEM GSKLIKLEVY GGKQFTVKCR RSYRRCTFGT GWIIFAREVG LAVGDVCVFE LIDAKNYVLY VHVAKKDHKS RLPLNKA // ID A0A0L9T3D3_PHAAN Unreviewed; 701 AA. AC A0A0L9T3D3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan48s001000 {ECO:0000313|EMBL:KOM25077.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM25077.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ258253; KOM25077.1; -; Genomic_DNA. DR Proteomes; UP000053144; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 77434 MW; 437395F52D9B538C CRC64; MITFMDSKEK SKEAEKCLDP QLWHACAGGM VQMPAVNSKV YYFPQGHAEH ACGPVHFRTC PKVRPLVPCR VTAIKYMADP DTDEVYAKLR LAPLSVNEAD YDREVVGPET QDKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGLEGSS GWNPAGGSCP MPYGGFSPFL REDDNRILRN GNSNGLNPSV SMTGRGKVRP EAVVEAANLA ANKQPFEVVY YPRACTPEFC VKAPLVEAAL QIRWCSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHL SPFSPPRKKL RLPQHPDFPL EGQIPLPTFS GNLLGPSNTN QFGCLPESTP AGMQGARHGH YGLPISDLHF SKLHSGLFPA GFPPIDHAAT PMRISNNQPL QKPSISENVS CLLSMANSTP SSKKTDEGKT PQLVLFGQRI LTEQQISLSS SVDTFSPVLT KICCSDGHAD KVPNISDCSG SALHQQQGLQ EQRSSCERFQ WYKDNPQETE AGLEAGHCKV FMESEDVGRT MDLSLLRSYD ELYRRLADMF GIEKSEMLSQ VLYRDSNGAV KHIGDEPLSD FIKSARRLTI LTDSGSNNVG V // ID A0A0L9T8T4_PHAAN Unreviewed; 757 AA. AC A0A0L9T8T4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM26791.1}; GN ORFNames=LR48_Vigan317s001200 {ECO:0000313|EMBL:KOM26791.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM26791.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ258341; KOM26791.1; -; Genomic_DNA. DR RefSeq; XP_017406886.1; XM_017551397.1. DR GeneID; 108320059; -. DR Proteomes; UP000053144; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 609 711 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 609 711 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 757 AA; 83676 MW; AFE252F7F96E62E1 CRC64; MECEVKLQGG DLHPEVVTEP NPVGFDNMEE EHSLSVAERE MWLNGDQDEI LGVNEASMFY ADFPTLPDFP CMSSSSSSSS APPLPLKTMT SSTTTTATTT TSSSSSSSSW AVLRSDVEED VEKNHGNGYM HDQFDATALS STASMEISQQ QNPDPGLGGS VGECMEDVMD TFGYMELLEA NDFFDPASIF ENEESENPLI EFGTLEEQVS LQEGQQEMMH QRENIEDDRK VPVCEEIKGE EEGGEGGGGV VDDEMSNVFL EWLKSNKDSV SANDLRNVKL KKSTIESAAK RLGGGKEAMK QLLKLILEWV QTSHLQNKRR KENSDNVNDP LQAQIQDPSA QNNQNTHTSG SFAPESNSCF NNQTPWLSPQ TFGTDQGPIM VPNQPYSQPM VGYVGDPYTT GSPSNNITAT HNHNNNPYQP GTDQYNMMES AHSWPHSQFN VPSPYSQSYG DNGLFTPGSF GGYGNNQYPY QFFHGPGDRS MRLGPSATKE ARKKRMARQR RFLSHHRNHN GNHHQNQGSD PHTRLGSDNC TTGLVAPHQA NSAAANWMYW QAMAGGPAGP MAPVVPTDPL AGQTVVDRST MHTQNSHQNR AASDRRQGWK PEKNLRFLLQ KVLKQSDVGS LGRIVLPKKE AETHLPELEA RDGISITMED IGTSRVWNMR YRYWPNNKSR MYLLENTGDF VRANGLQEGD FIVIYSDVKC GKYMIRGVKV RQQGLKPETK KAGKSQKNQN GTNASNTAGT AANNGRSSPP KPKAEKK // ID A0A0L9TFB6_PHAAN Unreviewed; 458 AA. AC A0A0L9TFB6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM29116.1}; GN ORFNames=LR48_Vigan635s004100 {ECO:0000313|EMBL:KOM29116.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM29116.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ258467; KOM29116.1; -; Genomic_DNA. DR RefSeq; XP_017409735.1; XM_017554246.1. DR RefSeq; XP_017409736.1; XM_017554247.1. DR RefSeq; XP_017409737.1; XM_017554248.1. DR RefSeq; XP_017409738.1; XM_017554249.1. DR GeneID; 108322224; -. DR KEGG; var:108322224; -. DR Proteomes; UP000053144; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 458 AA; 50707 MW; 7B5E840BE9B69BAE CRC64; MDLIRQVKGT YSDSREEEEE EEVTEIIGIT REAESSRLHH QDAASNFGKK LDLMELSLGS SKEEEGEGNL QGGGGGGGGG PLHHHHQHHH HQQHEHHHHH DGHGTCSNAK EVVEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS SNEKGLLLNF EDRNGKVWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGLGD MYRHRLYIDW RRRTDHGHPP SDPSASPLFL PSIRWYSLPA TSPIVPPRYH HDHHFHHLNY NNLFTFQHQH QYLGHAHGAA TSAAAAAHHH NNYGEHNSGS GTGSLYYLRS SMPMGGGADQ NLAGRGNSIV PMIIDSVPVN VGHRNHRHGH GGMSSGGGSS TTSSGKRLRL FGVNMECASS GEDSKGLSLG SAAHVTVGNS LPSSSSLQQR LRMPHEDPLS SSARFGDHKG GSGTSLLFDL DPSLQYHQ // ID A0A0L9TIW1_PHAAN Unreviewed; 969 AA. AC A0A0L9TIW1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan01g003400 {ECO:0000313|EMBL:KOM30480.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM30480.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003371; KOM30480.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 276 378 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 845 927 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 276 378 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 969 AA; 107150 MW; A4860579CE262D58 CRC64; MHPRCKCISL PVHSKTTPFP NKNSATFPPP SRQTALHASS NNSSASVNAA RTYVFHCPRS RQGDRAALPG KTIPPGVAGS QRGSTGKSRF CNSEEKRRLR SCHVVCERSV RSFNGKKMAS SEVSIKGNSV NGKAENSSGG FNGCNDVRNA GGELQNASSS SSARDAETAL YRELWHACAG PLVTVPREGE RVFYFPQGHI EQVEASTNQV AEQHMPVYDL PPKILCRVIN VMLKAEPDTD EVFAQVTLLP EPNQDENAVE KEGPPAPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSKQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNVPSSVIS SHSMHLGVLA TAWHAILTGT MFTVYYKPRT SPAEFIVPYD QYMESLKNNY TIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DQKRWPNSKW RSLKVRWDET SNVPRPERVS QWKIEPALAP PALNPLPMPR PKRPRSNVVP SSPDSSVLTR EASSKVSVDP LPASGFQRVL QGQELSTLRV NFAESNESDT AEKSAWSSAA DDEKIDVVST SRRYGSESWM SMGRHEPTYP DLLSGFGVHG DQASHPSLVD QNGPVANLSR KHFFDREGKH NVLSPWPVVP SSLSLNLLDS NTKVSAQGGD QVRGNLRFSS AFGDYTVLHG HKVDHSHGNF LMPPPLSTQY ESPRSRELLP KPISGKPSEV SKPKDSDCKL FGISLLSSPI ALDPSVLQRN VAIEPVGHMH TTHQQRTYEN DPKSENSRGS KPADGVLIDD HEKPAQTSQP QLKDVQPKSN GGSARSCTKV HKKGIALGRS VDLTKFSAYD ELIAELDELF EFGGELTSPQ KDWLIVYTDN EGDMMLVGDD PWQEFVAMVR KIYIYPKEEI QKMSPGTLSS RNEENQSASE GADAQQENKC QLNHSASEA // ID A0A0L9TKF5_PHAAN Unreviewed; 404 AA. AC A0A0L9TKF5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM31025.1}; GN ORFNames=LR48_Vigan01g058000 {ECO:0000313|EMBL:KOM31025.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM31025.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003371; KOM31025.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 169 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 169 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 404 AA; 45088 MW; D6162250B667EFC0 CRC64; MDNFPVPFSA ATTNPLIPNV SGTTSFSSNI IIPAQQNMAE LTNFNFPVDK TGEIGFPDPY FGPYDQNMHF QQMNPYPLHT LPTPQRNGIY GPPNSEVQTS VGPLTSKVAR DKRKKVRQKS KNVAPTAPLV PTKGTKEKPV SGRGKLTINL DRTTTVFCSP DGKKLEQVFT KQLKNSDVSV LGRIVLPKRE VEAKLPPLTD KEGKDIIVKD VYSEKIWSLK YKYWSNNRSR MYVLENAGDL VNHYELRLGD YITIFTDEMK NLRKQYVWAR KMRNLETPVC SSNMESSKTC ETDNLNDMKQ STNEDAYLEF FTKLNRKKDV EEANKLLTSF NGGGSSSSGA KSDMNIAQHD LSNTAGKGAP NQTTAEATPT APTTPLDGNN MPISDEDVYG GLDNIFEIEN SSWF // ID A0A0L9TLD1_PHAAN Unreviewed; 914 AA. AC A0A0L9TLD1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan01g091500 {ECO:0000313|EMBL:KOM31360.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM31360.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003371; KOM31360.1; -; Genomic_DNA. DR RefSeq; XP_017440490.1; XM_017585001.1. DR GeneID; 108346054; -. DR Proteomes; UP000053144; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 781 865 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 914 AA; 101298 MW; 91EE4BFEDB4AD709 CRC64; MKLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NVTMHADNET DEVYAQMTLQ PLSPQEQKEA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSIR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG MPSFNGLKDD DFGLNSSLMW LRDSDRGLPS LNFPGIGVSP WMQPRLDPSM VNYQTDVYQA MAAAALQDMW SSDPSKQHPT SLLQFQQPQN FLNRTSPTVQ TQILQQSQSQ QSFPNSQEIP HPSQSQAQTL THFQQHLQHQ HSFNNQNQHH LLQQQQQQQQ SQQPQQQQQQ LQQQQVIDHQ QISSAVSTMS QFVSAPQSQS PPMQAISSLG HQQSFSDSNG NPVTNAIVSP LHSILGSFPQ DETSHLLNLP RTSWVPVQPS TAWPPSKRVA VDPLLPSGAS QCVLPQVEQL GQPQSTMAQN AITLPPFPSR ECAIEGSSDP QNHILFGVNI EPSSLLMHNG LSSLKGVSSN CGPPTIPFQS SNYLNTTSTD SSMNPGMAHN IGESGFLQTP ENGGQGNPPI KTFVKVYKSG SFGRSLDITK FTSYHELRGE LARMFGLEGE LEDPVRSGWQ LVFVDQENDV LLLGDGPWPE FVNSVGCIKI LSPQEVQQMG NNGLELLNSV PIQRLSSGVC DDYAGHEDPR SISTGITTVG SLNY // ID A0A0L9TLW5_PHAAN Unreviewed; 735 AA. AC A0A0L9TLW5; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan01g110000 {ECO:0000313|EMBL:KOM31545.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM31545.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003371; KOM31545.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 101 128 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 735 AA; 80700 MW; E3C567F70A6ADC83 CRC64; MPALIDLNSA TEDHETPSSR PSSVCLELWH ACAGPMISLP KKGTLVVYFP QGHLEQHLHD FPLPASANIP SHLFCRVLDV KLHAEEGSDE VYCQVVLVPK SEQVHQKLRE AEIDADGEEE DAEAVMKSTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLEYSQQRP SQELVAKDLH GQEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL GIRRAAQLKS GSAISTFAAE QLNLSSLLDV VNALSARRAF SVHYNPRVSS SEFIIPIKKF LRSLDYSYSV GTRFRMRFET EEAAERRFTG LIVGITDVDP VRWPGSKWRC LMVRWDDLEA SRHNRVSPWE IEPSGSASTS NKLISAGLKR TKIGLPSTML DFQVSNAIGS SDFGESLRFQ KVLQGQEMLG VNTTFDSISG QNHQLSDLRR CYPGSNCPRI AATGNSIGIP QVSSNVSCNG IGFRESFIFQ KVLQGQEILP SQPYGRALSV DEACGNGSFG PFDGYRTLGP SNGWSSHLSN NSSHLHPPVP SGQVSSPSSV LVFQQAVNPV SNSDYNSKIS LMMEGKVHQQ LSYTSEAKGG KFLSVPYEPL RGLVQEGTSS CGVSNLHNQL ESSRSHDSIS ALRASQELVP TCKSRCRVFG FSLTEGAPVA STEVAGANQS AVTCSGPSFA RHGEDSFHPM HLHRSKAVGS YCTKVSNLYP LRHGILHSIL LEFSLIESAV SLSWN // ID A0A0L9TNL7_PHAAN Unreviewed; 105 AA. AC A0A0L9TNL7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM31764.1}; GN ORFNames=LR48_Vigan01g131900 {ECO:0000313|EMBL:KOM31764.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM31764.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003371; KOM31764.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 105 AA; 12051 MW; 2FFB3DBF00F1AE66 CRC64; MWPAISVRLE LPFCEVPTIL TYMGKSWDMV YCGQNKLQVF SAAGWKKFAV ENCLRVGDAC IFELMESSDK KVIFEVQILR GDIPYEILKN EMIMGQNPEM PIVLN // ID A0A0L9TU97_PHAAN Unreviewed; 436 AA. AC A0A0L9TU97; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM33759.1}; GN ORFNames=LR48_Vigan01g331500 {ECO:0000313|EMBL:KOM33759.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM33759.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003371; KOM33759.1; -; Genomic_DNA. DR RefSeq; XP_017434213.1; XM_017578724.1. DR GeneID; 108341071; -. DR KEGG; var:108341071; -. DR Proteomes; UP000053144; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 309 407 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 309 407 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 436 AA; 48351 MW; 5965D0B17BD55766 CRC64; MGVQSCNGCR SWEEDIYWSH FQFLHFVQFL RTGYDQHLAL PKTFSDNLKK KPPANVTLKG PSGVAWNVGI ITSGDTLYFA CGWEQFVKDH CLKENDFLVF KYNGESQFDV LVFDGGSLCE KASSYFVRKC GHTEAEDVGG SLNKKRDNAE DPMKEGHIPL KAGVQCASPG KSVHANGTKE PINVPFETPT PSEEAFNADV ESAGAEQITS DGVPLSAVPK ETVNGKRIRK LASVVKHVQT KRRGRGRPAK VSTVIERALD WVSGLDAEPV SAVRSAAQEA FISNRRPVTD DEIKNALALA QAGRTDDSLV VVMRPSHVYK RFFVSMPNKW IGEHIPPMSQ DVILRMDKGE WVARYSYHNI RHTGGLTGGW KHFVLDNNLE EYDVCVFKPA GQMNDNLVLD MSIFRVVEEI VPLSVMSPTG KRGRKPAAQN AILTET // ID A0A0L9TWH2_PHAAN Unreviewed; 341 AA. AC A0A0L9TWH2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM34509.1}; GN ORFNames=LR48_Vigan02g065900 {ECO:0000313|EMBL:KOM34509.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM34509.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM34509.1; -; Genomic_DNA. DR RefSeq; XP_017414019.1; XM_017558530.1. DR GeneID; 108325454; -. DR KEGG; var:108325454; -. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 193 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 193 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38645 MW; 01AD95BBCA2EFBD9 CRC64; MSINHYSMDL PETTLWWPQQ QHHQQQPILM EATPNPSSTS WPSADPLGLN LNHQNDDVEE DEEEEDQTTT TTQQEETEDE KEPMFEKPLT PSDVGKLNRL VIPKQHAEKY FPLSGGGGGD SGECKGLLLS FEDESGKCWR FRYSYWNSSQ SYVLTKGWSR YVKDKRLDAG DVVLFERHRA DAHRLFIGWR RRRHGDTSPV HVSGRAVGHG KSGDGSSKNE GGGATGVGLG WTRGFYSAHP YPTHQQQLHN HQPLPYQYDC LHAGRGSQGQ RERSIAEGNS PSSSSSSRVL RLFGVNMECQ TEHDSGPSTP QSSYNTTNMP STQGTQNHHH FYHRHQPYYY Y // ID A0A0L9TYR4_PHAAN Unreviewed; 599 AA. AC A0A0L9TYR4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan02g188300 {ECO:0000313|EMBL:KOM35733.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM35733.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM35733.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 599 AA; 65649 MW; A971E69A048C0B3B CRC64; MERGSERCLD SQLWHACAGA MVQMPPLNTK VFYFPQGHAE HANGKVDFGQ TRVPPLVPCR LSAMKYMADP DTDEVYVKMR LIPLREHELD LEDDCFLGNT VEGQEKPPTS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSAEPPVQT IIAKDMHGQC WKFRHIYRGT PRRHLLTTGW SNFVNQKRLV AGDSIVFLRA ENGDLCVGIR RAKKGIGGGS EFSSGWNPLF GGGSGFLCGS ESNLVGGAKG GGDEMVGRVA AESVVEAVAC AVNGRPFEVV YYPRASSPEF CVKASVVKAA MQIQWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPIR WPDSPWRLLQ VVWDEPDLLQ NVKCVNPWLV ELVSNMPTFN LSAYSPPRKK QRFLHDPYFQ VINQLPMPSF SSNLLNYTNS LCNIENNSSA GIQGARHAQF GLSPSDFPFN KLPTDMLLGG FSRLDHATKP VRPPCGTYKN STSNTTTKTN VDISCLLTVG NPIPNFKESN ATKAPHILLF GKLIHTEQKS SNTSSASTTG NSVSEGNSLK TSNASDGLGS ALHQNSPIEN NSDGGSPWYK DQHKADLGSD NVNTLCIAL // ID A0A0L9TYU0_PHAAN Unreviewed; 329 AA. AC A0A0L9TYU0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM35671.1}; GN ORFNames=LR48_Vigan02g182100 {ECO:0000313|EMBL:KOM35671.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM35671.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM35671.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 76 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 141 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 76 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 141 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 36387 MW; FB0B28CB57B920CD CRC64; MLDVHKIILI KGLHRVSNGN AILGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD IAAQRFRGRD AVTNFKPLAG AGDDAESEFL NSHSKSEIVD MLRKHTYDDE LQQSTRGGRR RRDAEAASCG AYDVKAREQL FEKTVTPSDV GKLNRLVIPK QHAEKHFPLS SGSGSGVSPR TVAAAAAKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKDNNL RAGDAVRFFK STGPDRQLYI DCKARSGGGI CELNNNNAGG LFVPVGPVVE PVQMVRLFGV NLLKLPGSDG VRVGYEGKRK EMELFAFECS KKLKVIGAL // ID A0A0L9U081_PHAAN Unreviewed; 378 AA. AC A0A0L9U081; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM36243.1}; GN ORFNames=LR48_Vigan02g239300 {ECO:0000313|EMBL:KOM36243.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM36243.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM36243.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 43085 MW; D6CC27B6C2D6A4E0 CRC64; MIPKEFTRKY GGRLLNPLFL KVPDGIEWEL CWTKDGTGNV WLEKGWKEFA TYYSLGYGHL VTFKYQQTCT LEVHIYNTCA VEINYPSNNT QNSSSNVLFE VAPTSPSLPG LSKKPRKHPI GPGSSLPQHV QVKVDLLQEN SGATRSETPS FMVTLKDTNV NGYILVIPSI FTKKYLKETG KQDILLQVLD GRTWHVTLKN GKFFKGWRAF VSHNYLNVGD VCIFELTESQ APCFKVSIIP ISQDKCSSSQ DREYVDLTKI QDFRCIDTFS IKAMQEAAKF TSVNPFFTLK IRANHRGDFR SRVPLDFVRE YFHKKQVTLQ FGNKSWRVKL VGAVPTKLSQ GWSPFAKECK LQPGNVCVFE LTNEEDLVLD VHIFRGQS // ID A0A0L9U0N8_PHAAN Unreviewed; 382 AA. AC A0A0L9U0N8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM36393.1}; GN ORFNames=LR48_Vigan02g254300 {ECO:0000313|EMBL:KOM36393.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM36393.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM36393.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 191 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 191 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 382 AA; 44410 MW; A392F3CEA27AC970 CRC64; MASQILRTDA TLPIFFFKVI LKTNLERLKI PNKFTRKYGD GLPNPLLMKL SNGTAWEVKW AKHNREVWLE KGWKEFVQHY SLDHGHLVCF KYEGTSQIHV IIFDQSAVEI DYFCGTDDEN DNLVQTEDTA DENDNLVQTE DKPNMILDEE TQQKAEQIGG ENYAQRTSSL NWPTQTRARE IASNFVSCNP FFTVFIKPCH ERQYRLKIPN IFTANYGGGL PNPLFMKLPN GTEWKVIWEK DSGEIWLREG WKEFVEHYSL DHGHFVFFKY EGTSEVHVNI CDQSGVEIDY LCGTGDGNYN LDQNEEEPII ILDEEEDPEQ IRGETSVQRT SSLNRPSQTR AREVACNFVS CNPFFTVFIK PSHGKDYRLR VKCNREMFVY LN // ID A0A0L9U0S7_PHAAN Unreviewed; 827 AA. AC A0A0L9U0S7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM36395.1}; GN ORFNames=LR48_Vigan02g254500 {ECO:0000313|EMBL:KOM36395.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM36395.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM36395.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0016616; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR006139; D-isomer_2_OHA_DH_cat_dom. DR InterPro; IPR029752; D-isomer_DH_CS1. DR InterPro; IPR006140; D-isomer_DH_NAD-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00389; 2-Hacid_dh; 1. DR Pfam; PF02826; 2-Hacid_dh_C; 1. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS50863; B3; 3. DR PROSITE; PS00065; D_2_HYDROXYACID_DH_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 318 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 340 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 318 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 340 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 827 AA; 93573 MW; A33C0DA3E9F61F74 CRC64; MSSGDGNAVH FFKKIHEDTL RNGDLRIPRS FVIKYWQDIS NPLHLLLPKG AEWEVKWRKV GADIWLFDKW KKFAEFYSLD ENDLLMFKYV GMSRFELVIL HQAGLEIMYP LKEATLDNAE NGNGNSSLHF KKTKSSLPRC RFSKKVKTNC RNPPNISEDV TNRSGPSHSI KEELDEQNAN GFHSTKFQKR VTKRKPSACN FSTRSGTAME RAESFRSKNP FFIRKMQPSY IQRHMMTVPN SFITEDEEDE HDGVTLWTSE SRPWHVEFYR NNSSNQINFT TGWKNFVKDN NLRLGDVCVF EKIKKSGISF KVIIFRHREE SSSPRFSDHS IPECKERELE NHFSVCIKPK DFNSVNLPRD FLKNHGIRHS NAVILEVGKK SWNVKLDSYC RSTSGWREFI RECQLKSGDI CLFELIDKKK MVFEVTIVPL HTFAAFMAKP VSIEVWNPNG KYRVISTKSM PGTRWINLLI QNDCRLEICT EKKTILSVED IIALIGSKCD GVIGQLTEDW GEELFSALSR AGGKAFSNMA VGYNNVNVDA ANKYGVAVGN TPGVLTETTA ELAASLTLAA ARRIVEADEF MRAGLYDGWL PHLFVGNLLK GQTVGVIGAG RIGSAYARMM VEGFKMNLIY FDLYQSTRLE KFVTGMFLPT YGAFLKASGE TPVTWKRAST MDEVLQEADI ISLHPVLDKT TYHLVNKERL AKMKKEAILI NCSRGPVIDE AALVEHLKEN PLFRVGLDVF EDEPYMKPGL AELKNAIVVP HIASASKWTR EGMATLAALN VLGKIKGYPV WFDANRVEPF LNENAQPPAA CPSIVNAKAL GLPSSKL // ID A0A0L9U102_PHAAN Unreviewed; 285 AA. AC A0A0L9U102; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM36367.1}; GN ORFNames=LR48_Vigan02g251700 {ECO:0000313|EMBL:KOM36367.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM36367.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM36367.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 84 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 84 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32797 MW; 0A6EBECBDAA433B3 CRC64; MLGSLQKVPS KFTRKHGSFL PNPVSLRPPD SKEWVVYWTQ ENGEVWLDKG WKEFVENYSL SYGYFVMFKF KGTSQIDVTI LDPSAVELDY FSSGKESVNT MNVTQMEQEP RPMSSMVPSQ PCGKTQNVER DANVQQQVYA DKGGPSHQGT NVQKIIKQQP NWVKSTLSGK CLNKPRSLKA QKITKNFKSK YPYFTSLIVQ AKLEENATKH VPKFLNCMRG QKDVMLQMEN REWWVKLICC REKYDVFSSG WSKFAKESNL EVDDVCIFEL IDPAIPMLRV HVVKS // ID A0A0L9U1E2_PHAAN Unreviewed; 302 AA. AC A0A0L9U1E2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM36600.1}; GN ORFNames=LR48_Vigan02g275000 {ECO:0000313|EMBL:KOM36600.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM36600.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM36600.1; -; Genomic_DNA. DR RefSeq; XP_017413266.1; XM_017557777.1. DR GeneID; 108324850; -. DR KEGG; var:108324850; -. DR KO; K09287; -. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 91 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 156 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 91 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 156 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 34560 MW; A8D81BC4D5D5E818 CRC64; MTNRNRECYS DCSEINFAAF GAMQEENNAA GPLLQKFKGV VPQQNGNWGA QIYANHQRIW LGTFKSEREA AMAYDSASIK LRNGDSHRNF PWNDQTVQEP QFQSHYSTET MLSMIRDGTY PSRFATFLST RQQGGVLKHV TLKDDGKEQL CCTQLFQKEL TPSDVGKLNR LVIPKKHAVT YFPNVCDGGA ESHEENVSAD VEVAFYDRLM RQWKFRYCYW KSSQSYVFTR GWNRFVKDKK LKAKDTIAFF TCEPVDCRKG GEGEAFGLID VIYSSDEDTK DEHTLKDLNA EKGLKLFGVL IK // ID A0A0L9U1V2_PHAAN Unreviewed; 432 AA. AC A0A0L9U1V2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM36394.1}; GN ORFNames=LR48_Vigan02g254400 {ECO:0000313|EMBL:KOM36394.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM36394.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003372; KOM36394.1; -; Genomic_DNA. DR RefSeq; XP_017414132.1; XM_017558643.1. DR GeneID; 108325555; -. DR KEGG; var:108325555; -. DR Proteomes; UP000053144; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 318 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 357 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 318 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 357 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 50434 MW; 928884B8A1576864 CRC64; MSTGDGSAIH FFKKIDEDTL RNGDLRIPRS FVSKYWQDIS NPLHLLLPKG AEWEVKWRKV GADIWLFDKW KKFAEFYSLD ENDLLMFKYV GMSRFKVTIL HQTGLEIMYP LKESNLDNAE NVNGNSSLHF KKTKSSLPRC RFSKKVKTNC RNPPNISEDV TNRSGPSHSI KEELDEQNAN GFHSTKFQKR GTKRKPSACN FSTRSGTAME RAESFRSENP FFIRKMQPSY IQRHMMGVPS SFVTEAEEDV HDRVTLWTSE SRPWHVEFYR NNSSNQINFT TGWKNFVKDN NLRLGDVCVF EKIKKSGISF KVIIFRDTEE SSSPRFSDHS IPECKERELE NHFSVCLKPK DLYYVNLPRD FFKNHGIRHS NAVILEVGKK SWDVKLDPYC RFTVGWCEFI RGCQLKPGDV CRFELMDKKK IVFEVTIVTC ME // ID A0A0L9U5J9_PHAAN Unreviewed; 661 AA. AC A0A0L9U5J9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan03g142300 {ECO:0000313|EMBL:KOM38041.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM38041.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003373; KOM38041.1; -; Genomic_DNA. DR RefSeq; XP_017419413.1; XM_017563924.1. DR GeneID; 108329619; -. DR KEGG; var:108329619; -. DR KO; K14486; -. DR Proteomes; UP000053144; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 632 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 74099 MW; 3E369F007361F3D9 CRC64; MSLHRGEGDE LYEQLWKACA GPHVEIPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK LPSEILCRVV NVHLLAEPET DEVYAQITLV PENNQTEPTS PDPCPSEVPR PRVHSFCKVL TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGSNGEL RVGVRRLTPV QSSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRLKMRLEG DDSTETDKRI SGTIIGVEDI SPHWVNSKWR SLKVQWDETP SFPRPDRVSP WEIEPILASV PTTMSSQPVV LKNKRPRQAT EVPDLGDTPL IAPTFWDPGL TQSDITQLGV ITESKRSEST AHMWHHNNNS SSNISMNQRK ASWLSSPSHL YLDTSDDSKS ISASPISKIH SERLNNDHCL DQVDKEISNV EPATGCRLFG IDLIDHTRSN SLSVDNASAV TSEGRTDANH ESDISKASKE WKQEQLQVSP KETQNKQICS RSCTKVQMQG VAVGRAVDLT TLDGYEQLVD ELEKMFDIKG QLQHRNKWEI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVHKLSS GSKLPISSME DSVISSDTAE T // ID A0A0L9U669_PHAAN Unreviewed; 289 AA. AC A0A0L9U669; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM38318.1}; GN ORFNames=LR48_Vigan03g170000 {ECO:0000313|EMBL:KOM38318.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM38318.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003373; KOM38318.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 33477 MW; 2C374161D38EBC91 CRC64; MTSTLNQGDD SHGGSASKPI HFFRIILSNN LQHGKLKLPA KFVSKYGNHL PNTMFLKLPN DAEWEVKLEK SDGSVWFQQG WKEFVEYHCL AHGHLLVFRY NGTSHFHVLI CDMSCMEIDY PVNKANHKRV RIKSENIQPP KTKKTTENKK RCCSNLQDTA SDELVRDHKG MLKNLNEGKR NMEALENTFM VIMKPTFFTT GYMYLPRAAV RSQNKRREEF VTLVVGDRRW RVKLVRYPND SAYFTNLLDF ARDNNLKEGD ACFFKLMNMG DNMVIKVSFV ARNSSLRGQ // ID A0A0L9U6C2_PHAAN Unreviewed; 338 AA. AC A0A0L9U6C2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM38340.1}; GN ORFNames=LR48_Vigan03g172200 {ECO:0000313|EMBL:KOM38340.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM38340.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003373; KOM38340.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 37821 MW; 3EA29AAB13715083 CRC64; MMDQRQREKL LRKTEACAFV AGVAADLRLV AAPGDIPNTN NVNSITNTTS TTSNVSKSHG SGRIHDANHL GLVAAFTNLG TVHRKKRLPR QRRSTVTTTP TLFLPSKQHD PNLPSSTPSA SSSLQSVKPS TPLRLAAREI DHRNLRFLFK KELKNSDVSS LRRMVLPKKA AETFLPPLDS KEGILLKMDD KDGTHAWSFK YRFWPNNNSR MYVLENTGDF VSTHGLRFGD TIMIYQHIEN NNYVIQARKA SEEDEFVEQS SETMNDMFPS DLEVNKPGCF NINYPAVNDA GMSFIYETTF SNDSPLDFLG GSMTNFSRIG PADETFGSVE NLSLDDFY // ID A0A0L9U8E1_PHAAN Unreviewed; 309 AA. AC A0A0L9U8E1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM39080.1}; GN ORFNames=LR48_Vigan03g246200 {ECO:0000313|EMBL:KOM39080.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM39080.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003373; KOM39080.1; -; Genomic_DNA. DR RefSeq; XP_017417793.1; XM_017562304.1. DR GeneID; 108328437; -. DR KEGG; var:108328437; -. DR Proteomes; UP000053144; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 34539 MW; A2C00163465A9130 CRC64; MSINHYSPEA RLYWTDQQQA STWLGNSHTP RFNLNDNQEE VDEEDEEVME KATAAGAGGE AAAEEEEKEA MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL ESSSSSSCGD SAKGVLLSFE DESGKCWRFR YSYWNSSQSY VLTKGWSRYV KDKRLHAGDV VFFHRHRTHP QRFFINSSRR QANPPAHVTT TATPSFYSAH PYPAHQLPFP YQPQSLHAPP GGGSQGQNQT TPGGNSSGGR VLRLFGVNME CQPDKDSQNS TPLSSYTLSS TTTTTLSHHH LLHPHTTTPF SSSSSSSNPH HHHMLRQQP // ID A0A0L9U9U9_PHAAN Unreviewed; 645 AA. AC A0A0L9U9U9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan03g289500 {ECO:0000313|EMBL:KOM39513.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM39513.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003373; KOM39513.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 645 Auxin response factor. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5005595538. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 568 645 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 645 AA; 71975 MW; 5D5E7CD7B5B38950 CRC64; MDRFCGLILI FCYGLVGGTD DLYTELWRAC AGSSVYVPRV GERVFYFPQG HLEQVAAFTQ HQQDGHMEIP VYDLPPKILC RVACVLLQAE TYTDEVFAQV TLVPEPRQNH FGLENEDNHV PSRTTTYSFG KVLTPSDTST HGGFSIPKRH ADECFRPLDM THQTPSQEIV AKDLHGFEWH FRHIYRGQPK RHLLTSGWST FVNAKKLVAG DSCIFVSGEY GEVRVGIRRA IRHHSNASPS SSLISGHSMQ LGILASASHA VATGSMFTVY YHPWTNPFEF IIPLKNYLKS TVPDYSIGTR VQMQCDVEES LRRYAGTIIG NEVIDSIRWP GSEWRCLKVQ WDAIVDAFMH PERVCPWWIE PLESGMEKHI PVLPNPKKAH VLHQRPLPGL NVFAMDDAAA QSSARPVADR DLQGQDYSGL STSRALQRPP STDVIHPSKF SIRGSQFGKE NLNQLPFLMQ DILHKSLGRS TSLPHEDLSI SSSNLSSLCS ESLGWPPSES RNENDAPLGH LGSCSKYKLF GVNLIDRQPE LPSPQLAGFS KTSSLLSSPP MCVTSGKTCK KCRSVNNRSC TKVLKLGTAL GRAVDLTRFR GYDELIAELD SMFNFGGSLV NGSSGWHVTC IDDDGDMMFL RDYPWQLSTK TNNII // ID A0A0L9UB68_PHAAN Unreviewed; 1118 AA. AC A0A0L9UB68; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan04g017100 {ECO:0000313|EMBL:KOM39973.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM39973.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003374; KOM39973.1; -; Genomic_DNA. DR RefSeq; XP_017421936.1; XM_017566447.1. DR GeneID; 108331633; -. DR KEGG; var:108331633; -. DR Proteomes; UP000053144; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 991 1084 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 672 696 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1118 AA; 125293 MW; BC2F04268684FA66 CRC64; MKAPPNGYLP NSSEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFVPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VTKYDKEAIL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPLLDFSMQ PPAQEIVAKD LHDSTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALFNQA SLGMRFRMMF ETEESGVRRH MGTITGISDL DPVRWKHSQW RNLQVGWDES TAGERPSRVS LWDIEPVVTP FYICPPPFFR PKFQVCRLSK NDDSDIENAF KRAMPWLGDD LGMKDASSSI FPGLSLVQWM SMQQNNQFSA AQSGFMPPSM LSSNTLHGNL PTDDPSKLLN FQAPVLSAPN LQFNKPNLPN QVNQLQQPQT SWPPQHQQQQ KVQSLMPTTL NPLQQQQQRQ QQLPVLQNLS QPQQQQPQMP QQRPQQPQQQ QSCQQTIMNN EAVSSNQIQN QCVQQPVTYS QLQQQQLLSG NIPPQQSFQS PNKNALLMTS LPQDSQFQQI DQQASLLQRQ QQQTQLQSSP LQLLQQSMSQ RTPQQPQMTQ MSQQNSSEQQ PQLQLLQKLQ QQQQQQQQQQ KQQQLLSTSS PLLQSHLLQQ QNTHQQNQQL PQLPLSQCHQ PQQLGNNAFS MEKLFNGNNY SSSALMQTQQ FPMNQSQNTQ KSLTNTRAPS TLTDGDAPSC STSPSTNNCQ ISPSNLIKRN QQLPTTLGGP SVVEPTNHLI QELHRKSEMQ IKHELPCVRG PDQLKCKGTI ADQMEASSGT SYSIDPNNIH QNFPLPSFCM DGDVQSHPRN NLPFTSNLDG LTPDTLLSRG YDSQKDLQNL LSNYGGAPRD IETELSTAAI SSQPFGVPDM PFKPGCSSDI AINDPGVLND GLWASQTQRM RTYTKVQKCG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSSAEVQQMS LDGDLGHVPV PNQACSGTDN GNAWRGQYDD NSAASFNR // ID A0A0L9UC96_PHAAN Unreviewed; 418 AA. AC A0A0L9UC96; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM40530.1}; GN ORFNames=LR48_Vigan04g072800 {ECO:0000313|EMBL:KOM40530.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM40530.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003374; KOM40530.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 418 AA; 46959 MW; 096AA61D91BBEF10 CRC64; MGSDLVYYCS KSIKLQCIPP AFSGIVASMV NKKINLNDST GQQWKVKVSE VNGSFVFGEG WSRFSSGHGL KVGYLLVLNY IKDLHFDVKI YDTSACEKLG LPEKRNQKKR SRGKIGSPVR DGILVRQELD APRQCSKVDL VVPQKAKESG QHVLILDHSE EDPCRSKSLE FDQSHEDDGT MKSQNGDLIV SNVDYESNIV EKDAMICSKD TMFEGVLSTE VALDISELRI YGRSASLEAD TYTYDKTFNS KIEENKAILS NREAQECQFS KALGKMKKFP VDMTPNLDSS MDEFHLTGVF YSVTAVEIFY HFKSRYTCVH VLVCIVVHGQ VLSLYVFPPR NPLLYLPESI DSIMITGEVS KKLKKELVTL NEMEATGLPK EINGLLNSDI FNEDNASHFK PTQLSCVVPH DNVFLVQY // ID A0A0L9UEW9_PHAAN Unreviewed; 929 AA. AC A0A0L9UEW9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan04g147400 {ECO:0000313|EMBL:KOM41276.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM41276.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003374; KOM41276.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 230 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 801 883 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 230 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 929 AA; 103373 MW; FAEC877D01DAD165 CRC64; MASSEVTMKG NCLNHNDGGA VEAQAPATAK DAEAALFREL WHACAGPLVT VPREGERVFY FPQGHIEQAL YDYARTVADE RSVVRSVEMA SSEVTMKGNC LNHNDGGAVE AQAPATAKDA EAALFRELWH ACAGPLVTVP REGERVFYFP QGHIEQVEAS TNQVADQHMP VYDLPPKILC RVINVQLKAE PDTDEVFAQV TLLPEPNQNE NDVEKEPPLP PPPRFHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSKQPPTQEL AAKDLHGNEW RFKHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI LTGTMFTVYY KPRTSPAEFI VPYDQYMESL KNSYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDSDPKRWR ESKWRCLKVR WDETSNTPRP ERVSPWKIEP ALAPPALNPL SMPRPKRPRS NAVPSSPDSS VLTREASSKV SVDPSPANGF PRVLQGQEFS TLRGNLGESN DSDAAEKSVV WPPAALDDEK IDASTSRRYG TESWMSMGRN EPTYSDLLSS FGAGGDLSHS SLMDQISPVV YPTRKQSSDH EGKLHMPQPW PVMPSSLSLN ILDSNTKVPA HGGDPTYQAR VNLRYSAFGE YPSLHHKVEH SHGKLMPPPP APLNQYQTPC SREVMSKPVS TKTFEAVKSK NGDCKLFGFS LISGPVVPEP SVSQRNVNEP TGQMHLTPHQ QRTSENDEKS DHSKGSKTGD DLIVDDHDRP LQTSQLHVKD GQAKPHSSSA RSCTKVHKKG IALGRSVDLT KYTGYDELVT ELDQLFEFEG ELLSTKKDWL IVYTDNEGDM MLVGDDPWQE FCAMVRKIYI YPKEEIQKMS PGTLSSKNEE NLSGSEGADA KDVKRLPLQK FNYEYCLDA // ID A0A0L9UFX2_PHAAN Unreviewed; 555 AA. AC A0A0L9UFX2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan04g184100 {ECO:0000313|EMBL:KOM41643.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM41643.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003374; KOM41643.1; -; Genomic_DNA. DR RefSeq; XP_017420833.1; XM_017565344.1. DR GeneID; 108330793; -. DR KEGG; var:108330793; -. DR Proteomes; UP000053144; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 61000 MW; 22C78D7FF009ABAD CRC64; MPRQSPPSQP QQPSELEPAI WQACAGPSVE IPKPNSMVYY FPQGHFDQAS SAPKNLSSHL LAKPFIICSV VSVNFLADPL TDEVFTKMVL QPVGNNLPVE SFHTPAFAPP AVAPPPNDDN EVVSFAKILT PSDANNGGGF SVPRFCADSV FPKLNFGADP PVQNLSVTDV HGFTWEFRHI YRGTPRRHLL TTGWSTFVNN KKLVAGDSVL FMKRAERLFV GIRRATRFSS ERANCPKLML IEEEEDEEED EEKMKRVFKR DGKGKLTAKV VVEAAELAAR QMKFEVVYYP KAGWSEFVVK IEVVDAAMRI AWSEGMRVKM SVETDDSSRM TWFQGTVSAV SSHDNGQWCS SPWRMLQVTW DEPEGPRNGK WVSPWQVELV SPPPALHPAF PPAKRLRTAN GYGVLTNGEG GTFSVAGVTN SAMVQLNPAY LGYSTFPAGM QGARHDVFSA SSFPSYPRDL SHLCIDNSFG NNTFSRQKNL PTELHVGGNS QSDELSPDSS FHSCVTDTLG NTNNSIKPAP DSFQLFGAVI RKEQPVQNDL TGTGCAITGD KAPGR // ID A0A0L9UIT4_PHAAN Unreviewed; 115 AA. AC A0A0L9UIT4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM42601.1}; GN ORFNames=LR48_Vigan05g020500 {ECO:0000313|EMBL:KOM42601.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM42601.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003375; KOM42601.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 115 AA; 12772 MW; 8532ADDF266CF8E4 CRC64; MRVVDVVGLD VQKLQPRYPL NSPLDLQSEF GNLIKSKGLT QVMLLGQKDV IMCSVLVSVT RNSTKFGKGW KEFCTEYGLK EGDVLLFEVN NLGNDIIVEV YINGCPCTLI HPISV // ID A0A0L9UJ03_PHAAN Unreviewed; 225 AA. AC A0A0L9UJ03; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM42880.1}; GN ORFNames=LR48_Vigan05g048400 {ECO:0000313|EMBL:KOM42880.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM42880.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003375; KOM42880.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 26376 MW; 471ACF5DECF663F3 CRC64; MQGEKDPKKW HENIFDNKRG KKSQNFEEGS SKSLKSKDGK VVEKHDSLAI LHQKDQLSIE VSSSKVCFSS QEHLTSSSQE HLTSSLQEQL TSDDHSYLTF MENFQEHIFQ HGKPLEKQLT LSDVNSNLNR LLLNKKDVEK SFLPFLRNGE NIEKGIEVCV FDIRKNSYTL TFKKWTNKYY VLNGGWKDFF KDHKLDKNDT IKVWMFRLSN HSNLCFAFDY KKIKS // ID A0A0L9UJK9_PHAAN Unreviewed; 245 AA. AC A0A0L9UJK9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM42881.1}; GN ORFNames=LR48_Vigan05g048500 {ECO:0000313|EMBL:KOM42881.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM42881.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003375; KOM42881.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 29053 MW; E759D77CDDD5391A CRC64; MKRSWSYMEK EIIEEFSKNE LEILELLEIM QGEKDPKKWH ENIFGNKRCK KSHNFEERPS KSEDGKVVEK HDSLAILHQK DQLSIEVSSS KVCFSSQEHL TSSSKEHLTS DDHDHSYLTF MENFQEHIFQ DGKPLEKQLT LSDVNVNLNR LLLNKKHVEK SFLPFLRNGE DIEKGIEVCV YDICKNNYTL TFKKWTNKYY VLNGGWKDFC KAHKLEKNDT IKVWMFRHSN HSNLCFALDY KKIES // ID A0A0L9UJY3_PHAAN Unreviewed; 113 AA. AC A0A0L9UJY3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM42879.1}; DE Flags: Fragment; GN ORFNames=LR48_Vigan05g048300 {ECO:0000313|EMBL:KOM42879.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM42879.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003375; KOM42879.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KOM42879.1}. SQ SEQUENCE 113 AA; 13577 MW; 4FAD1646AC6879F8 CRC64; KPLEKQLTLS DVNANLNRLL LNKKHVEKSF LPFLGNGEDI EKGIEVCVYD IRKNSYTLTF KKWTNKYYVL NGRWKDFFKD HKLEKNDTIK VWMFRHSNHS NLCFAFDYKK IES // ID A0A0L9UK16_PHAAN Unreviewed; 245 AA. AC A0A0L9UK16; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM42909.1}; GN ORFNames=LR48_Vigan05g051300 {ECO:0000313|EMBL:KOM42909.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM42909.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003375; KOM42909.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 49 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 181 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 49 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 181 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 28002 MW; 6A9B6A80708C9BA6 CRC64; MRLKKYGKDV FFGSTWREFV NYYSLGYGSH LIFRYVGNSK FRVLIFDITA AEICYPLQTR GTNKPNWKRS KFENEQHHGH ETKKKKRMVG NGVETKDEDD VNLIRPSETK GRKKKGDCSH GKQVKSGCRG NHSSWKIGKD VATASDRLMP RNPFVTCTIK SSRLYVSTEF ACKYLKPGVG MMLQNSNGEQ WDVSCSCHSR CRALIISRGW AKFMRDNDLS EGDQCLLELI KRDPIVLKCT VPGEA // ID A0A0L9UNQ6_PHAAN Unreviewed; 811 AA. AC A0A0L9UNQ6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan05g181700 {ECO:0000313|EMBL:KOM44212.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM44212.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003375; KOM44212.1; -; Genomic_DNA. DR RefSeq; XP_017425708.1; XM_017570219.1. DR GeneID; 108334395; -. DR KEGG; var:108334395; -. DR Proteomes; UP000053144; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 683 765 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 89962 MW; D520F1D90029FF3F CRC64; MEIDLNYAVT EPEKTASCNG DCDKGAACVC SLSSPTCSSS GSSSARVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQASSFSPFS PMDMPTYDLQ PQIFCRVVNI QLLANKENDE VYTQVTLLPQ AELAGMYMEG KEIEELGADE EGNETTPTKS TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HNVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRGENGELR LGIRRAARPR NGLPESIVGS QNYYPNFLSS VANAISSKSM FHVFYSPRAS HADFVVPYHK YVKSIKNPVT IGTRFKVRFE MDESPERRCT SGIVTGMSDL DPYKWPKSRW RCLMVRWDED IEINHQDRVS PWEIDPSASL PPLSIQSSRR LKKLRPGLQG ASPSHLITGV AAGGSGFMDS EESVRSSKVL QGQEKSGFMS LYYGCDTVTK QPEFEIRSPS HPNFASSTGV RKIAAGEFMR VHPPSYAGFT EPNRFPRVLQ SQEICQLRSL TGKVDLNFGA WGKPSVSFTN YNLQQATKPN FHSLGPEVIQ TAYFPYGDIH KAGQGSGTSM LCSKPTNFQR ENVPFNSPSS QSGIMRNEVG RAEVTIQNEQ KLQDNISGAA SLGTNVRIPN DDNFNGKVNA CKLFGFPLSG EATTQNLQNS AKRSCTKVHK QGSLVGRAID LSRLNSYSDL LIDLERLFSM EGLLRDPNKG WRILYTDSEN DIMVVGDDPW HEFCEVVSKI HIHTQEEVEK MTIGMMNDDT QSCLEQAPVM IEASKSSSVG QPDSSPTVVR I // ID A0A0L9UNR3_PHAAN Unreviewed; 694 AA. AC A0A0L9UNR3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan05g178400 {ECO:0000313|EMBL:KOM44179.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM44179.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003375; KOM44179.1; -; Genomic_DNA. DR RefSeq; XP_017425546.1; XM_017570057.1. DR RefSeq; XP_017425547.1; XM_017570058.1. DR GeneID; 108334298; -. DR KEGG; var:108334298; -. DR Proteomes; UP000053144; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 581 661 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 76525 MW; D6C16ACA4C7493E7 CRC64; MKETEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNLDFGAS RIPIPPLVLC RVAAVKFLAD PETDEVFAKL RLVPLRNTEL DHEDSDKVDG NGPEGSEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG WSSFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGVGG PEAPCGWSSG GGGIGPYGAF SAFLREESKV VRNGCGRPKV SGESVREAIT LAANNQTFEV VYYPRANTPE FCIRTSAVRG AMRIQWCSGL RFKMPFETED SSRISWFMGT IASVQVLDPI RWPNSPWRLL QVTWDEPDLL HNVKRVSPWL VELVSNIPVI HLAPFSPPRK KLRFPQHPEF PLDVQFPIPT FSGNPFGPST SSPMCCLSDN APAGIQGARH AQIGISLSDL HLNHNKLQLG LLPTNVRQLD LQNGISNVNI TNHGKSKESL SCLLTMGSPR KSLEKSDQVK RHQFLLFGQP ILTEQQISRS SSDVLSQNGT ATDDENKEKK ETGFLSDSQS SVSPGKSSST AEFSWQLGSD TSHCKVFMET EDVGRTLDLS CLGSYEELYM RLATMFGIER SEMLSHVLYR DATGALKQTG EEPFSEFTKT AKRLTILSDS SSKDSRRVWI TGTRNAEHGL DATSNKTGPM SIFA // ID A0A0L9UT17_PHAAN Unreviewed; 390 AA. AC A0A0L9UT17; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM45990.1}; GN ORFNames=LR48_Vigan06g129600 {ECO:0000313|EMBL:KOM45990.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM45990.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003376; KOM45990.1; -; Genomic_DNA. DR RefSeq; XP_017426030.1; XM_017570541.1. DR GeneID; 108334646; -. DR KEGG; var:108334646; -. DR KO; K09287; -. DR Proteomes; UP000053144; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 129 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 207 315 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 129 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 207 315 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 390 AA; 42488 MW; 0AC813E0134A5541 CRC64; MDCMDESTTT ESLSISLSPT VSSEDKLLLL SSNNPSPPPP STTLCRVGSG ASAIVDPDGG GNTEVESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDIAAQRFR GKDAVTNFKP VSGGAGEGDD EDGEAEFLNS HSKSEIVDML RKHTYNDELE QSKRSRGVVR RRGGAAAAGN GNSIAGACFV KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLHSANG VSATAAKGVL LNFEDVAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDTVCFHRS TGPDKQLYID WKARNNNVNE VGLFGPVGPV VEPIQMVRLF GVNILKLPGS EPNGNNNASG TIPGFCNGKR REMELFSLEC SKKPKIIGAL // ID A0A0L9UT49_PHAAN Unreviewed; 365 AA. AC A0A0L9UT49; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM45901.1}; GN ORFNames=LR48_Vigan06g120700 {ECO:0000313|EMBL:KOM45901.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM45901.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003376; KOM45901.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 41300 MW; 90336080889AAFF4 CRC64; MTSCPGIDPL PSEFCFFKII RDTTLQEGKI MIPKEFTQKY GGRLLNPLFL KVPNGIEWEL CWTKDGVGNV WLDKGWKEFF TYYSLGYGHL VTFKYQQTCT LEVQIYNTNV VQRNYLSNNA QNNFSNVSFE VAPTSPSLPG PSKKPRTHPS GVDGQSFSLP HVQVKVDQLQ GNSSGAIRSK TPLSCVKACK GVKIKKTFGL NRRRRRQKQP RRPGSSNQEE ETAKELRVGG AMRPGRRGGE SVSDSDSANG EKERGKVKIK KKLTESQEDM RRLLEWGANR VREIASSTPF SNLNSNESSF ILLDDFKTEA PSLDLNFPPN GRNIHTAVEI LYIYGHVQVP KRSRQQSLHF YPISYFNRVS PKDSL // ID A0A0L9UTV9_PHAAN Unreviewed; 414 AA. AC A0A0L9UTV9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM46188.1}; DE Flags: Fragment; GN ORFNames=LR48_Vigan06g149400 {ECO:0000313|EMBL:KOM46188.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM46188.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003376; KOM46188.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 278 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 278 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KOM46188.1}. SQ SEQUENCE 414 AA; 46821 MW; DE4E01A9449CA2BE CRC64; RIPDIFLRKY GTQLSTVATL TVPDGSIWRI GLKKADSKIW FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EINYQSAMRN HMEGPCFVNY NHIFEEMEDI DSIDLSDLSP SYLTSGAMQN KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL NRVNWGDGGS SYSSKSANSQ GSQSTRDIGV QFNAVEFKRS TDELKLRYSN EEAVNKTAKK KRKSESQGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKA FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTVENNLGEG DVCVFELLRI KEVVLQVTVF RVTEDASLLN SPPVQQLSQN MSHTKLLNPH LQHRVSSTVK LIRN // ID A0A0L9UVK3_PHAAN Unreviewed; 927 AA. AC A0A0L9UVK3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan07g030600 {ECO:0000313|EMBL:KOM46602.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM46602.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003377; KOM46602.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 791 877 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 927 AA; 102309 MW; EF85EE4F9F2E3FA3 CRC64; MKLSSSGFNQ PGEEEGSGSF FNSFVFVQIV FGLNVLITDM PLVDWTIGEK KCLNSELWHA CAGPLVSLPP VGSRVVYFPQ GHSEQVAAST NRAVDAHIPN YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPQEQ KEVYLMPAEL GTPSKQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYSQQPPAQE LIARDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN EKNQLLLGIR RANRPQTIMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGISDLDPVR WPNSHWRSVK VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SPFPLRLRRP WPTGLPSLYG LKDGDMGIGS PFMWLQGGLG DQGMQSLNFQ GLGVTPWMQP KLDSSMPGLQ PELYQAMASS AFQEMRTIDP SKSSQPLLQF QQTSNVPSAH TSEVQRQVLP QSQPQSTLLQ NFQENQVPAQ SQLLQQQLYR YHPYGDQRQQ HQQLKNLPVQ QQLPNVISPL SNFASGTQSQ SPPMQALATH CQQQSFPEPI RNHISGSDVS PIQSLLGTFS HDGTSQLLNL SGSNSVISSA SILPKQMAVE PQLPSASAQC VLPQVENLGT SQSNVSELAV LPPFPGREHS AYHGAADPQS NLLFGINIDP SSLMLQNGMS NLRNMGSVND SLSLPFSASN CGGTTGTDFP LSSNMTTSSC VDESGFLQSS ENVDQANTPT GTFVKVHKSG SFGRSLDISK FSSYDELRSE LARMFGLEGQ LEDPKTQRSG WQLVFVDREN DILLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKGVSPSTS APGHKLSTSG NSCDNYASQQ ELRSSRNGMA SMGSFHY // ID A0A0L9UW76_PHAAN Unreviewed; 725 AA. AC A0A0L9UW76; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan07g081400 {ECO:0000313|EMBL:KOM47110.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM47110.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003377; KOM47110.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 725 AA; 80672 MW; 756150769AE821E8 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSFHDGSY EATNGLMWLR GGPGDQGLNS PSFQGSGLLP WMQQRMDPTL LGIDHNQQYQ AMFTSGLQNL GSGDLMRQQM MNFQQPFNYL QQSGNPNPSL QLQQPQAIQQ SVTSNNILQP QAQVLAENLS QHLLQKSHNR EDQTQQQQQQ HAYQDTVLLQ SDQLHQRQHS GLPSPSYSKP DFLDSSMKFP ATVSPGQNML SSLCPEGSGS LLNLSRSGQS MLTEQQLPQQ PWAPKFTPLQ VNTFGNSMPH VQYSGKDTAM VSPHCNSDTQ NPILFGVNID SSGLLLPTTV PRYTTASADT DASAMPLVES GFQTPLYPCV QDSSELLRSA GQVDPQNQTR TFVKV // ID A0A0L9UWM3_PHAAN Unreviewed; 360 AA. AC A0A0L9UWM3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM47131.1}; GN ORFNames=LR48_Vigan07g083500 {ECO:0000313|EMBL:KOM47131.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM47131.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003377; KOM47131.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 104 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40869 MW; 91F76EC263F9FBAB CRC64; MLWSHVYRGF WLDHVPKLKS KKSNAEVEPR RSSRVRNPVP SYREDVSVHL PALRKRSRSN SSTWGSYIAR PLDEIKEASK EERLCALEAA EELQINLNSS NPSFIKSMVR SHVYSCFWLG LPSKFCEEHL PKTVHDMVLE DENGSEYQAV YIGNRAGLSG GWRAFALDHK LDDGDALVFE LIEASRFKIY IVRAFPNLVE EKGNDILVEE GNKHATKVPK TKCNLESESK TKKPRQETYE TSESESSQEH IDKEVKPQGA NPLKQTKISK KKTQKKSILL ATTDSKGKVQ LKTEEPMLSL VLSKTRKSKG INGIDDSDKL EKKICVHDAD SKLEKVEEAS KCVVQTARKK PGPKYFRKKA // ID A0A0L9UX49_PHAAN Unreviewed; 716 AA. AC A0A0L9UX49; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM47147.1}; GN ORFNames=LR48_Vigan07g085100 {ECO:0000313|EMBL:KOM47147.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM47147.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003377; KOM47147.1; -; Genomic_DNA. DR RefSeq; XP_017428427.1; XM_017572938.1. DR RefSeq; XP_017428428.1; XM_017572939.1. DR GeneID; 108336469; -. DR KEGG; var:108336469; -. DR Proteomes; UP000053144; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 318 419 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 318 419 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 79617 MW; E5F53EC2CA5FE44B CRC64; MELDVCMNGA CKNGYAREWK KGWPLRSGGF ARLCDKCGSA YANSIFCEKF HLHQTGWREC NFCNKSIHCG CIISRFSFEY LDFGGIGCST CLRASPFPLI QETGNSIRSI RSVKNHASDR HTEHIDDRLF LDGSSKRKPM HMRRIVDGRE SSRWPQVKRD DIHSCIDLSR EEMRFSNVMK PSNHSLKFTA LENNRPTWEN RSMHRSSSLN ISLGASSGNP VLPSASAVAA EGRFDGKTSS SSFHQGQRSL SIMPKPLMNA ININMESSNG MISQERVARP PTDGKGKNML LSRYWPRITD QELQQLSGDL KSTIVPLFEK VLSASDAGRI GRLVLPKSCA EAYFPPISQS EGLPLHMKDV KGNEWTFQFR FWPNNNSRMY VLEGVTPCIQ ALQLNAGDIV IFSRIDPGGK FVLGFRRASD STDTQDASAA HSNVLSTKET TFSGATAGNS YHDLLQTRKG NGDPYLNKCS EHFRLGTAGI AERLRTENSE IVNKDLVQLP ISVSEKTQNI GPMCKRLLIH NEDAMELRVT WEEAQDLLCP APSIKSNIVT VEDQEFEEYE EPPVFGKRTT INARSSGSLS FASEEMSPKE LDNIPVIRKG VLEDDVADRG DSSAGATTKY PRHRSGCTCI VCIQASSGKG RHSPPCITVE RRLDTLLTRK KQRLGTQKDE DEGDGACLSE KEGNINKGCL KKGELSAGQI DLNCRPNLDE DMQVDI // ID A0A0L9UY25_PHAAN Unreviewed; 540 AA. AC A0A0L9UY25; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan07g117600 {ECO:0000313|EMBL:KOM47472.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM47472.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003377; KOM47472.1; -; Genomic_DNA. DR RefSeq; XP_017430846.1; XM_017575357.1. DR GeneID; 108338460; -. DR KEGG; var:108338460; -. DR Proteomes; UP000053144; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 540 AA; 59441 MW; 25D8CC48ADADC5E6 CRC64; MPLPQSPPNP RRVDPKIWRA CAGAAVHIPK LHSRVYYFPQ GHMEHASPSH SLSPPFRSLP FVPCLVSSRD LLADPFSDEV FARLLLTPLP HPFHRNNQND DSNIQSDDEE RECQNGVVSF SKILTPSDAN NGGGFSVPRF CADSVFPPLD FRADPPVQLL SVTDIHGVAW RFRHIYRGTP RRHLFTTGWS KFVNHKKLIA GDSVVFVKDS DGNVSVGIRR ATRFVSSSSP VEEEQPPAQG EGFPLYATGR VSPKAVKAAA ECVSRNAPFE VVYYPRAGFA DFVVSAEVVE DAMRCAWAGG MRVKIGMETE DSSRMTWFQG TVTSAYASDN GPWRMLQVNW DEPEVLQNAK RVSPWQVELV SPSLALHTAF SPSKRFRADQ GSGLFSDREG DPFFPMIGFP NSTMANMDKK LLSYDTFPAG MQGARHDLFS ASSFSNFLND NSYLYMGSSS FGNNTVQSLG IVSTDLNISS SQSDDTSPHS QSSLHSFDTE FTGTRHCNTK VGSGSILLFG KIIQPAESPH DAADYIERDG SGGSKEIEDS // ID A0A0L9UYN3_PHAAN Unreviewed; 953 AA. AC A0A0L9UYN3; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan07g136300 {ECO:0000313|EMBL:KOM47659.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM47659.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003377; KOM47659.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 826 909 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 953 AA; 105822 MW; ACA65927D808B27F CRC64; MKVPSNGFLP NSGEGERKPI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPTLDYSMQ PPAQELVAKD LHDSTWPFRH IYRGQPKRHL LTTGWSVFVS TKRLLAGDSV LFIRDEKKHL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNIQVGWDES TADEESDMEN AFKRGMPWLG EEFGMKDASS SIFPGFSLVQ WMSMQPNNQL SATQSGCFPS MLPSNTLQGQ FVQPPMAYGQ LQQQQLLSGG IQTQQGIQSA SKNTFPLTSL PHDSQFQQQL DQQANLLRQQ QQQTQLQQSP LQLLQQNLPQ IASQQQPPAT QMLQQNPSEQ QLHLQLLQKL QHQQQQLLST STPLLQSQLL PQQNPHQQNQ QLPLPPPPIS HHQPQQLANN VCSTEKLLNS NNFSSSSLMQ SQQNPMSQSQ NTQKSLTTTR APSTLTDGDA PSCSTSPSTN NCQVSPPNLL KRNQQLPAPL GGSLMVEPTS NLLQDLHSKP DMQNKHELLN LKGPDQLKYK GAITDQLEAS SSGTSYCLDP GNVQQNLPLS NFCMEGDAQS HPRNSLPFDT NLDDLTPDTM LLRGYDSSKD LQNLLSNYGG APRDIETELS TADISSQSFG VPNMPFKPGC SSDVVINETG VLNNSGLRGN QPPRMRTYTK VQKRGSVGRC IDVTRYRGYD ELRHDLAKMF GIEGQLDPQR TDWKLVYVDH ENDILLVGDD PWDEFVSCVQ SIKILSHSEV QQMSLDGDLG GNVPIPNQAC SGTESGNAWR GQYEDNSAAS FNR // ID A0A0L9V2F9_PHAAN Unreviewed; 903 AA. AC A0A0L9V2F9; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan07g283500 {ECO:0000313|EMBL:KOM49131.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM49131.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003377; KOM49131.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 807 889 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 141 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 903 AA; 99795 MW; D893E7114340554A CRC64; MMASVEEKLK TGGVGVGVGA GAGGGMVVGR VRKTLNSELW HACAGPLVSL PQVGSLVFYF PQGHSEQVAA STRRTATSQI PNYPNLPSQL LCQVQNVTLH ADKETDEIYA QMSLQPLNSE KEAFPISDFG LKPSKHPTEF FCKTLTASDT STHGGFSVPR RAAEKLFPPL DYTIQPPTQE LVVRDLHDNT WTFRHIYRGQ PKRHLLTTGW SLFVGSKRLR AGDSVLFIRD EKSQLRVGVR RVNRQQTTLP SSVLSADSMH IGVLAAAAHA AANRSPFTIF YNPRACPSEF VIPLAKYRKA VLGTQVSVGM RFGMMFETEE SGKRRYMGTI VGISDVDPLR WPDSRWRNIQ VEWDEPGCGD KQNRVSVWEI ETPESLFIFP SLTSSLKRPL QSGFYGKPFM RVPENGTMEL PNSMPNLYSE HLMKMLFKPQ IINNNGALFS AMQQESAAAR GPLQEMKTTL AADSMPLRNL HTQSIPDQPI PLNMQSLLKS DQPEKLHTLA KIELPSGIVA DKPKLEPEVL PPDHMLDYAS TSMEGCNMEK VPTNPVNQQG LANQLTFHNQ NQTPLTQSTP WPMQAQIESS LPHPQMIDMA QAETAMVNSL LPQLDIDEWM AYASSGPFAT PNRPTGPLPE LQEHTSLQPQ VVNPPLPNHE VWDHYVKSLK FLSQTDQLAS ICQPGTFNGI NGLPSPNSLR GLSAESNNQS EICVNVDVSN SVGTTVVDPS TSSTILDEFC TMKEREFQNP NDCMMGNLSS NQDVQSQITS ASLTESHAFS FRDIPDNSGG TSSSHVDFDE NSFLQNNSWQ QVPAPIRTYT KVQKAGSVGR SIDVTTFKNY EELIRAIECM FGLDGLLNDT KGSGWKLVYV DYESDVLLVG DDPWEILSPT EVQQMSEEGM KLLNSGALQG MNV // ID A0A0L9V475_PHAAN Unreviewed; 233 AA. AC A0A0L9V475; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM49860.1}; GN ORFNames=LR48_Vigan08g068700 {ECO:0000313|EMBL:KOM49860.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM49860.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003378; KOM49860.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 233 AA; 26127 MW; ECC2EEB0F6502311 CRC64; MAASTSALTL RVLWKFGSIH FSHSDIGYVD RHFAAAFQNE LGPTWSLLDN NGHTHVVTYN MDTVNPRITN GWGQMRNIYP ERLNDSHISF DYVGNNNFHI TIYFGACSQE RRESFIYDGT NYPDTSLFSV KLTKSQARGS HLDLQIAFGN LIRSKGLTQV MLLGQKDGVM CSVLVSVTRN STKFGKGWKE FCTEYGLKEG DVLVFEVNNL GNDILVEVYI NGCPCTVIHP ISV // ID A0A0L9V6J7_PHAAN Unreviewed; 695 AA. AC A0A0L9V6J7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan08g149800 {ECO:0000313|EMBL:KOM50671.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM50671.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003378; KOM50671.1; -; Genomic_DNA. DR RefSeq; XP_017433571.1; XM_017578082.1. DR GeneID; 108340596; -. DR KEGG; var:108340596; -. DR Proteomes; UP000053144; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 583 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 105 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 76107 MW; 1FE654367D5BCD97 CRC64; MKEGEKVLDP QLWHACAGGM VQMPKVNSKV FYFPQGHAEH AHTNIDLRVP PHILCNVEAV KFMADPETDE VFAKLSLVPL RNSEPGPDAE GGADVAEASE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVVAKDV QGETWRFRHI YRGTPRRHLL TTGWSSFVNQ KKLVAGDSVV FLRSENGELC VGIRRAKKGI GFEVWNSASG SGSGSIGGSG NCGIGPYGPF SFFLREENKS LRNGGGGGGG GGNLSGRAKV RPEAVVEAVT LAAANKPFEV VYYPRASTPE FCIKASSVRA AMRIQWCSGM RFKMAFETED ASRISWFMGT IASVQVLDPI RWPNSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNLPVI NFTPFSPPRK KLRFPQHPEF PLDVQFPIPP FSGNQLGPNH PLCGFSDNAP AGIQGARHAQ IGTSLSDLHL NSKLQLGLLP SNIQQHGLYS GISSGNTTNH DKSKESLSHL LTIGKSSKTL EKSDDVKKHQ FLLFGQPILT EQQISGDLLS RGKKSPDDVK DKEKCFVDDS QSALFSSGKA SAAEFSWQLG LDTGHCKVFL ESEDVGRTLD LSRLGSYEEL YRRLSYMFGV ERSEIPNYVF YYDAKGAVKQ TGEEPFSDFM KTAKRLTILT DSGSKNVTRA FITGTRNGEH GLDASNKTGP LSIFA // ID A0A0L9V6M1_PHAAN Unreviewed; 791 AA. AC A0A0L9V6M1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan08g154200 {ECO:0000313|EMBL:KOM50715.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM50715.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003378; KOM50715.1; -; Genomic_DNA. DR RefSeq; XP_017433556.1; XM_017578067.1. DR GeneID; 108340585; -. DR KEGG; var:108340585; -. DR Proteomes; UP000053144; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 747 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 87890 MW; 2E640E1D6844ECD5 CRC64; MEFDLNHEVT EVEKNAFGDR EREKDAGVSC WSSSTSSSSS SSSARVSSSY LELWHACAGP LTSLPKKGNV VVYFPQGHLE QVASFSPFTP MEIPSYDLQP QIFCRVVNVQ LLANKENDEV YTQVTLLPQP ELEGMNSEGK ELEEFGAEEE GDERSPTKST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK NLVSGDAVLF LRGENGELRL GIRRAVRPRN DLPESVIGSQ NCYPNVLSSV ANAVSTKSKF HVFYSPRESH ADFVVPYQRY VKSIKNPVSI GARFKMRLEM DESQERRCNS GTMIATSDLD PYRWPKSKWR CLMVRWDEDI ETNHQDRVSP WEIDPSAPLP PLSIQSSPRL KKLRTGLQVA SPSQLITARG SGLVGFEESV RSPKVLQGQE NAGFVSLYYG CDTVTKPLGF EMSSPSHPNL GSAEVRKATS SEISSVHPFS YAGFVETNRF PRVLQGQEIC PLKSLTGKID LNLGTWGMPN LGFNLHQATK PNFQPTLFPY GDIHQAVQPS LFCSKSTTFQ RENVPFNKPS TQAGIIVNEV GQPELPNEHK LQDNLSAAAA LGAANMGVPN DNNVQGKVNA CKLFGFSLSG ETTAQNLQNS AKRSCTKVHK QGSLVGRAID LSRLSSYNDL LIELERLFGM EGLLKDPNNG WRILYTDSEN DIMVVGDDPW HEFCDVVSKI HIYTQEEVEK MTIGIISDDT HSCLEEAPII TEASKSSSVG QPDYSPTAVR V // ID A0A0L9V700_PHAAN Unreviewed; 299 AA. AC A0A0L9V700; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM50841.1}; GN ORFNames=LR48_Vigan08g166800 {ECO:0000313|EMBL:KOM50841.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM50841.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003378; KOM50841.1; -; Genomic_DNA. DR RefSeq; XP_017432963.1; XM_017577474.1. DR GeneID; 108340237; -. DR KEGG; var:108340237; -. DR Proteomes; UP000053144; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 34277 MW; F825264B3625631F CRC64; MAGGVKKYPL FFTIFVPEQH SQTMKVPKEF LKKLNEDLSS NEVLSSSSSG DKWQVSVLKK GNEVYMQNGW PKFVTDNSIV LHDVLLFTYH GENCFHVQIF DKNGVERLCL KETTQEKKDM PCRNKGFIFT GSETMKTGQK QTATPSLART KKKKERHFSP GKSHQEDLSL PKDFPAPQHS VEIESSEALK LAESFTSSKP YWKHLMTKCH VEGRCILPIA TKFARKYIPE EVKQIHIGNS EGTLWKVHVS WSKGYAHFST GWANLVRDNK LMRGDTCIFE LEENLHLRVH IFRTRCAPS // ID A0A0L9V776_PHAAN Unreviewed; 245 AA. AC A0A0L9V776; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM50843.1}; GN ORFNames=LR48_Vigan08g167000 {ECO:0000313|EMBL:KOM50843.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM50843.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003378; KOM50843.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 29282 MW; C1824B410C0B543C CRC64; MTGAERYPDF FKVFLQEQHL ERILIPNAFV KLERLQGKIP EDVLLRNSSE RVWHVKTRFF GDRLYFDEGW KIFHEENCLR NVDFLIFRYD GVNEFRVKIL ERSTQCEKTL VKMEEEEGNE EEKAATQEVE ETVITQEEQA DDCDIEDEED SEDQDYDDDD NDDSDFDENT EMEEQSEEEI FVDPVGYTSQ SYRKTCRRDT ASNSYPQTED PFKEDEFDPE TCIQPENNFF EAKLYRSRPN ELVRT // ID A0A0L9V7C2_PHAAN Unreviewed; 408 AA. AC A0A0L9V7C2; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM50842.1}; DE Flags: Fragment; GN ORFNames=LR48_Vigan08g166900 {ECO:0000313|EMBL:KOM50842.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM50842.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003378; KOM50842.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KOM50842.1}. SQ SEQUENCE 408 AA; 46397 MW; 2713B3361DA1D787 CRC64; RLPDDFMRKY GGELSPIVTL SVPDGSVWRV GLKKADNKYW FRDGWQEFIQ HYSIGVGYLL VFRYEGKSGF NVHVFNLATS EINYQSAIRC SNEGPHFANL LKFFEEIDDE DSIEILDSSP SHLAPSSLQN RVLACSVDKM SPAKSYTPPA LQNLFNGSKL NSINWGEGGD AHCSKSANSL DDRFTRDIGV QFNAVEFKRS TEELKLRASM EERMKKTARK KRKSDGQEAS AEQEEEVEMR FRFYESASAR KRTVTAEERE RAISAAKAFE PANPFCRVVL RPSYLYRGCI MYLPSCFAEK HLNGVSGFIK LQISNGRQWP VRCLYRVGRA KLSQGWFEFS LENNLGEGDV CVFELLRMKE VVLQVTIFRI TEEVGMLKPP PSQQNQNMSS AKLLSTPLQQ HLSSTQMV // ID A0A0L9V955_PHAAN Unreviewed; 221 AA. AC A0A0L9V955; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM51518.1}; GN ORFNames=LR48_Vigan09g017700 {ECO:0000313|EMBL:KOM51518.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM51518.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM51518.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25051 MW; 7A9479FB21C31198 CRC64; MVAASAYEET RRKRVEENRK RMEALNLPLL SRALHKCPSP KSSPLKSIKK SRTTEKELVV VRRSGRLAKL CSPVYKEMPI DRISIPRRCV SNRHRDLSNR VYASDEARME ALEQAENLMS GLKSDIPNFI KSMLQSHVSG GFWLGLPVHF CKSNLPKGDE VMTLIDEDGN EYPTIYLKRK TGLSGGWKGF AVAHDLADGD ALIFQLIKRT TFKVTHHTLV F // ID A0A0L9VCI6_PHAAN Unreviewed; 825 AA. AC A0A0L9VCI6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan09g143500 {ECO:0000313|EMBL:KOM52776.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM52776.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM52776.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 695 783 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 825 AA; 91421 MW; 84015D3275D5CB21 CRC64; MKLSTSGLGQ QGLEGEKKCL NSELWHACAG PLVSLPTAGT RVVYFPQGHS EQVAATTNRE IDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT FLPMELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSIFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYIKAVYHT RISVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG SSSLHDGRDE ASNGLMWLRG GAVDQGLNSL NFQGAGMLPW MQQRMDPTLL GSDQNQQYQA MLAAGLQNLG SGYLMKQQMM NFQQPFHYLQ QSGNSNSPLQ LQSQQSVQQS VSSNMLQPQA HVLTENLSQH LLQKPHNNQE VQAQQQQHSY QESLLIPSDQ LHQRQHSGVP SPSYSKPDFL DSSMKFPVSV SPGQNMLSSL CPEGSGNLLN LSRSAPSLLS EQQWTQKYAP VQVNAYGSTV SQTQYSGKDS AMVLPHLNSD AQNSTLFGVN IDSSGLLLPT TVPGYSTSSA DTNSSTMPLG ESGFQGSLFG CMQDSSELLQ SAGHVDPQNQ TQTFVKVYKS GYHELREELA QMFGIEGKLE DPPRSGWQLV FVDRENDVLL LGDDPWESFV NNVWYIKILS PEDIQKMGEQ AVESLALGSG QRLNGTGAES QDIVSGPPSI GSLEY // ID A0A0L9VCS1_PHAAN Unreviewed; 921 AA. AC A0A0L9VCS1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM52722.1}; GN ORFNames=LR48_Vigan09g138100 {ECO:0000313|EMBL:KOM52722.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM52722.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM52722.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 347 448 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 659 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 347 448 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 921 AA; 101706 MW; 3E93B74614A3202A CRC64; MVRALMNGER GGFCDLVDSP NCAASAGCSN SSAMFLVYLG KLLFLLYRSI LLLDSVGSAY ENSVFCSKFH HQQTGWRECN FCNKPIHCGC MVSRSLFEHL DFGGIGCVSC VNTSQLSTMR NIENPNGPVS LKKNNSSDRP SRSEGRLFAR GVDEGKLMQF CKIIEASESS RWNNAQKDGT ISRHGHNNQE AKCSFGEGDI GFSNVVKPSV QSLTFATLEN NRSPWEIKNI HEANVQPSLS MYLGNASGKN SVLPSAGEAV EGRLEGKTSP PFHQGQRSRP IFPKPVKSGL TMNVEIDKGT ISQSRVARPP ADGRGKNQLL PRYWPRITDQ ELERLSGDLK STVVPLFEKV LSASDAGRIG RLVLPKACAE AYFPSISQSE GVPLRMQDVK GNEWTFQFRF WPNNNSRMYV LEGVTPCIQA MQLRAGDTVT FSRIDPGGKL VMGFRRASNS ADTQETSTSA QSNSAKGATS AGTENLPSGS NNANLLLSMK GNVETNFNGQ REHPLLATGT SGLLITETNG IMTNNTSLQR KVSVSEKKKT RNIGPKSKRL LIDNEDAREL KLTWEEAQDL LRPPPSVKPS IVTIEDQVFE EYDEPPVFGK RTIFSTCSSG VKEQWAQCDD CSKWRKLPVD ALLPANWTCF DNAWDSRRCS CTVPEELSSG ELESLLKTDK DFKKRRSDEK SMSIQEHMAS GLEALASAAA LGDNLVDTAE SSAGATTKHP RHRPGCSCIV CIQPPSGKGR HKPTCACNVC LTVKRRFKTL MLRKKKRQSE REAEAAQKDQ VLPKEESDTN ETSRDDATQL EKEVVGLSRS QAEVGESSAA GQIDLNSDPN REDMVVDLSA IFFCESDPTA EHEYMNQNDP RSYTNELQNG ENSSLHTPQS NGEGQRHFSD LRSFASIMWN QERRDEEDSE PNQNQNQNNL C // ID A0A0L9VDB1_PHAAN Unreviewed; 736 AA. AC A0A0L9VDB1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan09g164200 {ECO:0000313|EMBL:KOM52983.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM52983.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM52983.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 614 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 736 AA; 81749 MW; B4B7CB53FF6D2AA8 CRC64; MAHLEAPVRT VSTSQPETGQ WLMLRGDFLD LALLGCLESV GDGDLYTQLW KLCAGPLVDV PCEGERVFYF PQGHMEQLQA STNQGPNQEL SQQIPHFNLP SKILCRVVHI QLLAEQETDE VYARITLLPQ SNQEEPTSPD PSPPETQKQS FHSFSKILTA SDTSTHGGFS VLRRHATECL PPLDMTQTIP TQELAAKDLH GFEWKFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF LRGENGELRV GVRRVARQQS PMPSSVISSQ SMHLGVLATA SHAFLTSTMF VVYYKPRTSQ FIIGLNKYLE AVNKFSVGMR FKMRFEVEDS PERRFSGTIV GVGDVSPGWR NSQWRSLKVQ WDEPAIIPRP ERVSSWEIEP FVASTALNVT QPVVKSKRSR PEVSSSEIGP NSPGAGLWYH GPSLSHDPTA LGGTSEVQSN ESPVIWCTRM KEINVNPMNG NKSSSSRVRV EGMWPSSPHL SVSSNLFPDP KNSKAVTAQS TVSGYAPVSS RPNDDLAHDP VECGKRSENP MDCWVFGVNL TNNFTNVALP DKELGCPPII IPSGPKDSIP VAACETQPGQ NHNYSLSNKL QKQIISDGSP SERHAKQTTV PSTRTRTKVQ MQGVAVGRAV DLTVLKDYEA LVDELEKIFD IKGELRMQTK WVITFTDDEN DMMLAGDDPW PEFCSMAKRI FICSREDVKK LKSKHSGCSS EGEETLLSQD SQNREETQQI SCDLTA // ID A0A0L9VEW0_PHAAN Unreviewed; 907 AA. AC A0A0L9VEW0; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan09g225500 {ECO:0000313|EMBL:KOM53596.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM53596.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM53596.1; -; Genomic_DNA. DR RefSeq; XP_017436490.1; XM_017581001.1. DR GeneID; 108343007; -. DR KEGG; var:108343007; -. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 774 858 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 907 AA; 100719 MW; 3218EAF593DE6617 CRC64; MRLSSAGFSP PPQEGERRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPALDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRQWPPG LPSFHGMKDD DFGLNSSLLW LRDGDRGLQS PTFQGIGVNP WMQPRFDPSM LNMQTDMYQA AAAAVQEMRG LDPSKQHSAS ILQFQQQQNF PNRTAAFVQA QMAQQPQHQQ IFGNNQENQH SPQSQLQTQA HLQQHLQHQH SFNSQHHHQH QQQLRQTQQQ QQQQQVVDNQ QISSAVSSMS QFVSAPPPQS PPMQAISSLC QQQNFSDSNG NSGPTIVSPL HSILGSFPQD ETAHLLNLPR TSSWIPVQNS TGWPSKRVAV DALLSTGVSQ CVLPQVEQLG QPQSTVSQNA ITLPPFPGRE CSIDQEGSND PQNHLLFGVN IDSSSLLMPN GMSTLKGVSS NNDSSTMPYQ SSNYLNTATG TGSSLNHGIT PSIGGESGYL QSPENAGQGN PLNKTFVKVY KSGSFGRSLD ITKFSSYHEL RSELAQMFGL EGELEDPVRS GWQLVFVDRE NDVLLLGDGP WPEFVNSVWC IKILSPQEVQ QMRNSGLELL NSVPIQRLSN GICDDYVSRQ DPRNLSTGIT AVGSLDY // ID A0A0L9VFJ7_PHAAN Unreviewed; 854 AA. AC A0A0L9VFJ7; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM53836.1}; GN ORFNames=LR48_Vigan09g249500 {ECO:0000313|EMBL:KOM53836.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM53836.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM53836.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 347 411 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 588 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 347 411 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 94332 MW; 27F8727D5B04B525 CRC64; MASASSSTKL CFNSDCKELR PERPKKGWRL RSGELAELCD RCGSAFEEGR FCEIFHSNAS GWRSCETCRK RVHCGCIVSS HSFMLLDPGG IECYACARKN IIMPSNLPWP QSFSLQNRLS DRLRDLSAKG WNQLAGSGPV PWKQAPSLFN SASSTDLIPD VPSLAELSNS FDKMYCNERL PASALEKKSE DYTGLPVHWN VTICPREMKL MNGMRNEDKA SSCLNMCQQP SSLKEESSTQ PFGLPVPNSC QNERNGQLGV TGSHPQQTPP PPGKHFNGTM HLAPDSSGEA QVRNGRPRAD ARGRNQLLPR YWPRCTDLEL QQISIEYPSN RIITYFPPIS QPEGLPLKIL DAKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRLEPE GRLVMGFRKA SSAVPSDQDN ETNKSGNGFS AHGEVELADP NSWSKVDKSG YIAKEALGSK SLISRKRKSG ILGSKSKRLR IENEDLIELK ITWQEAQGLL RPPPSHIPSI VVIEGFEFEE YEEAPVLGKP TIFTSDNVGE KIQWAQCEDC LKWRKLPASA LLPSKWTCAD NSWDPERSSC SAAPELTAEQ LENLLPPCNS AVPKKMKAAK QDPDNAEALE GLDTLANLAI LGEGEALPAS AQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCL TVKRRFRTLM LRREKKQSEK EAETTRKKQQ QQHSQPLPSS EILLDEDSLP CSNTGDSSPN HNKEGNDGSD DDPNRIKSSV SPFKGQIDLN IQPEREEELS PGSDSGGMMK LLHDATERYL KQQTVNSGTG DSAGSQSQLV GDAMREDKLS NGVTHGSSSH STDKEHAQSL SMNV // ID A0A0L9VFP1_PHAAN Unreviewed; 733 AA. AC A0A0L9VFP1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan09g239600 {ECO:0000313|EMBL:KOM53737.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM53737.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM53737.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 733 AA; 80479 MW; 466F31244490BED7 CRC64; MGLIDLNTTE DDEAPLSASS SSAASSSSSH SGISTSASTL VGPPPPPPPP PSSVCLELWH ACAGPLISLP KKGSVVVYLP QGHFEHVQDF PVTAYDIPAH IFCRVLDVKL HAEEGSDEVY CQVLLVPESE QVEQRLREGQ IEADGEEEDT EAMVKSTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHGL EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGI RRAAQLKGSG SFAVPTGQQL NPGTFMDVVN ALSTRCAFSV CYNPRFSSSE FIIPVHKFLK SLDCSYLVGM RFRMRFETED AAERRFTGLI AGISDVDPVR WPGSKWRCLL VRWDDMEAAR HNRVSPWEIE PCGSASSSSN MMAAGLKRTR IGMTSTKMEF PSPNGIGTSD FGESLRFRKV LQGQEILGVN PPFDGINAQS PRLYDLGRYY IGPNCPGIPP TGNNIRMQHA ASDFSCNGTG FSESFRFQKV LQGQEILPSQ PYGRALSIEE ARANGRLGHF DGYQLLNSRN GWSVQMHDNA PHLHASVTPS QVSSPSSVLM FQQAVNPVSN SDYNNKKHSK MYQGLCASEV KARTFASPPS DDLTFSRRAP ERASSLGMFD VRNQLGSSQS HNSVSALRNN QELVSSCKSS CRLFGFSLTE NTHVATKEVD ASTITLPINA GPSFTRIVED EFHPSRTLQS KAVGSNCTKV SYL // ID A0A0L9VGA6_PHAAN Unreviewed; 389 AA. AC A0A0L9VGA6; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan09g275500 {ECO:0000313|EMBL:KOM54096.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM54096.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003379; KOM54096.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 210 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 389 AA; 43808 MW; A86002105B995A31 CRC64; MCFHCFIGST NDALYKELWH ACAGPLVTLP REGVRVYYFP QGHMEQLEAS MNQGLEQQMP SFNLPSKILC KVVNVHLRAE PETDEVYAQI TLLPEADQSE VTSPDDPLPE PPRCTVHSFC KTLTASDTST HGGFSVLRRH ADDCLPPLDM TQQPPWQELV ATDLHGNEWH FRHIFRGQPR RHLLTTGWSV FVSSKKGENG ELRVGVRRLM RQQGNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAKSH KLSVGMRFKM RFEGDEVPER RFSGTIVGVG DNKSSVWTNS EWRSLKVQWD EPSSILRPDR VSPWELEPLV STPPTNSQPS QRNKRSRPPI LPSTLADSSL QGDLSTHNLP IKLFCLCLL // ID A0A0L9VGN4_PHAAN Unreviewed; 158 AA. AC A0A0L9VGN4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM54206.1}; GN ORFNames=LR48_Vigan10g009800 {ECO:0000313|EMBL:KOM54206.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM54206.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003380; KOM54206.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 158 AA; 18795 MW; E6DF79EED215F188 CRC64; MAEGSSNDAG KGKNIVEDKD YEREFQYKDE MQLEFVFNVG HVKDFELSMP YRAQLTNDKW NLFLRGPYFE DILLQFLKEE EDVKEGLPVT VYDKGGHEFP MMLKKFDKDS ITYYVLNRGW FNFCDQKRLQ ENDVVALRTF RHAITDELSF VVTFTKMR // ID A0A0L9VH07_PHAAN Unreviewed; 184 AA. AC A0A0L9VH07; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM54207.1}; GN ORFNames=LR48_Vigan10g009900 {ECO:0000313|EMBL:KOM54207.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM54207.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003380; KOM54207.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 114 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 184 AA; 21346 MW; 99F4348952AB2F15 CRC64; MAGSSSNSGR AKSVVEGNKH AKEIQFNDEL HLEFILDAGI VKDCELSLPY GVQLTNDKWN LFLPLLGFEE TLIGFLREEE NVRKGIEVKV YDKGCHEYEM MLLKEEEDVR KGIEVKVYDR GGHEFEMMLK KWVIDSNQFY VLNRGWFSFC NEHGLGQGDL VALRAFRHSI TDMLCFVVTF RRMR // ID A0A0L9VP08_PHAAN Unreviewed; 261 AA. AC A0A0L9VP08; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM56637.1}; GN ORFNames=LR48_Vigan10g252900 {ECO:0000313|EMBL:KOM56637.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM56637.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003380; KOM56637.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 155 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 29718 MW; B73FC43FCBD7DF55 CRC64; MAASTSAQTL RILWKFGSIY FSHSDIGYVD RHFDAAFQNE LGPTWSLVDN NGHTHVVTYN MDTINPRITN GWAQMRNIYP ERLNDSHISF HYVGNNTFHI TIYFGACSRE SRESFIYDST NYPDTSLFPV KLTKSQSQGS HLVRGYFNLF FVYTFHKFHN VNYLIFVTAQ DLQIAFGNLI RSKGLTQVML LGQKDGIMCS VLVSVTRNST KFGKGWKEFC TEYGLKEGDV LVFEVNNLGN DILVEVYING CPCTVIHPIS V // ID A0A0L9VQS8_PHAAN Unreviewed; 414 AA. AC A0A0L9VQS8; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM57227.1}; GN ORFNames=LR48_Vigan11g025900 {ECO:0000313|EMBL:KOM57227.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM57227.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003381; KOM57227.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 157 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 157 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 414 AA; 46211 MW; 8E27DCE01263A4C8 CRC64; MDLTLGSSKD EGNLQGSGGA ASSVFGHHAS GSSSADGNVN NLQQPSEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSANEKGLL LNFEDRNGKS WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGDLYRHRLY IDWRRRPDHH HHHGPDPSAT LFTPFFLPNQ QHFIRWGATG RFYSLPSPNP PRHHDHLQQH LNYNTMYHQH HHPFHHQLQG AAGAGGNGTH HYNNYHDMSS SGSGSVYYLR STPPPMPFTD HQTLNTRQQQ QEGGNVSHPP IIIDSVPVAH HHHHHQHHRG GKSGGSSTST SPSTAGKRLR LFGVNMECAS STSEDPNCFS LLSSSSMAHA TMANSNSPPS SSLPPLQLLR EDSLSSPSSA RFGDQRGEQP SMLFDLDPSL QYRQ // ID A0A0L9VRB4_PHAAN Unreviewed; 906 AA. AC A0A0L9VRB4; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 07-JUN-2017, entry version 13. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM57473.1}; GN ORFNames=LR48_Vigan11g050600 {ECO:0000313|EMBL:KOM57473.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM57473.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003381; KOM57473.1; -; Genomic_DNA. DR RefSeq; XP_017442385.1; XM_017586896.1. DR RefSeq; XP_017442386.1; XM_017586897.1. DR GeneID; 108347567; -. DR KEGG; var:108347567; -. DR Proteomes; UP000053144; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 906 AA; 100305 MW; 7C8E6984D6537150 CRC64; MESRSCMNVT CATLTTIRWR KGWALRSGEF ADLCDKCGSA YEQSAYCDTF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI AINEKPNLSG TSKVIDISAQ QCTSLANQLN VRGMQGGNYA ENDGLRCWFK PHKIETDVPS TEMKPEILPS VGELGSTLIS QFHFESNGSS KASKAESCKA DTEIRDIYES LAQTNLSMTL ATPIGNSNPF HSSVVDEREQ SKTSSLLLGS RSRHLLPKPP RSSSGTGLEV NAGMVSQIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK ATNSTAIQET LPSNMPNGSH SSETSYSGVY ENLPILSGYS GLLQSQKGCS ETHLNVLSKK WNSAGGDMNW HNIDIPESRK REGLPLPPVL VPEKKRTRNI GSKSKRLLID SQDALELKLT WEEAQDLLRP PPAVKPSIVM IEDQVFEEYE EPPVFGKRSI FVVRSAGVNE QWTQCDSCSK WRKLPVDVLI PPKWTCVENL WDQSRSSCAA PNELNPRELD NLLRLNKEFK KQRLAASQRP ALDHESSGLD ALANAAILGD DASDSGRTPV VTTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQLTW RTKDESEVDS TSRHLTPVDG LENEVRAPSE LDPRTQDQVA EAAKGQLDLN CQPDREEAQT GPNNVSMTSL LEEANLPLET YLKQNGLTSL ISEQQTNSAS NVQAQTTNES EGRQNEDCGT ASVIHEQDSS HEDNSGQDKD QNNSLS // ID A0A0L9VS56_PHAAN Unreviewed; 233 AA. AC A0A0L9VS56; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KOM57911.1}; GN ORFNames=LR48_Vigan11g094400 {ECO:0000313|EMBL:KOM57911.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM57911.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003381; KOM57911.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 233 AA; 25955 MW; 36AB3CE174C47C80 CRC64; MAASTSALTL RVLWKFGSIH FSHSDIGYVD RHFAAAFQNE LGPTWSLLDN NGPTHVVTYN MDTVNPKITN GCGQLRTIYP ERLTDSHISF HYVGNNNFHI TIYFGACSQE RRDSFIYDGT NYPDTSLFSV KLTKSQARGS HLDLQIAFGN LIRSKGLTQV MLLGQKDGVM CSVLVSVTRN STKFGKGWKE YCTEYGLKEG DVLVFEVNNL GNDILVEVYI NGCPCTVIHP ISV // ID A0A0L9VTH1_PHAAN Unreviewed; 620 AA. AC A0A0L9VTH1; DT 11-NOV-2015, integrated into UniProtKB/TrEMBL. DT 11-NOV-2015, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=LR48_Vigan11g118600 {ECO:0000313|EMBL:KOM58152.1}; OS Phaseolus angularis (Azuki bean) (Vigna angularis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Vigna. OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM58152.1, ECO:0000313|Proteomes:UP000053144}; RN [1] {ECO:0000313|Proteomes:UP000053144} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144}; RX PubMed=26460024; DOI=10.1073/pnas.1420949112; RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., RA Sun Y., Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., RA Ma Y., Wu B., Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., RA Li Y., Wang J., Varshney R.K., Wang J., Ling H.Q., Wan P.; RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight RT into high starch and low fat accumulation and domestication."; RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003381; KOM58152.1; -; Genomic_DNA. DR Proteomes; UP000053144; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000053144}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000053144}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 590 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 59 161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 69166 MW; 1214873217DF3735 CRC64; MLSRASNVSA EEASTNQELN QRIPLLHLPT KILCRVVNVH LLAEQETDEV YAQITLVPES NVLTASDTST HGGFSVLRKH ATECLPALDM SQPTPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DTFVFLRGNN GELRVGVRRL ARQASSMPSS VISSQSMHLG VLATASHAVA TQTLFVVYYK PRTSQFIIGV NKYLEAVSTK FGVGMRFKMR FEGDDSAETD KRFSGTIVGI EDISPHWENS KWRSLKVQWD ELAAVPRPER VSPWEIEPFV ASSTPSVQPT IVKTKRPRPS SEVPDVDATS AASVFWDTDL PQPDTTQINV LAESKQNDNT GTWHHMQTDM NSKSNSNNTM LRNQTEGSWL SSPHSSCPSQ LFQDTTDDSK SVSAWPVSKP HPSRLNNEHV LDQVDKESKV ETATSYRLFG IDLIDHSRNS YAVEKASPHA VNVPKVTTEG CTSTLSQTDA GHMSEVPKAS SKERKQEQQQ VSPKESQSKQ ISRSRTKGVA VGRAVDLTML DGYNQLINEL EEMFDIKGQL QHRNKWEIVF TDDEGDMMLV GDDPWPEFCS MVRRIFICSS QDVKKMNCGS KLPISSVEDG TVISSDTTET // ID A0A0N7KHN5_ORYSJ Unreviewed; 143 AA. AC A0A0N7KHN5; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os03g0621900 protein {ECO:0000313|EMBL:BAS85313.1}; GN Name=Os03g0621900 {ECO:0000313|EMBL:BAS85313.1}; GN ORFNames=OSNPB_030621900 {ECO:0000313|EMBL:BAS85313.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS85313.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS85313.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014959; BAS85313.1; -; Genomic_DNA. DR EnsemblPlants; OS03T0621900-00; OS03T0621900-00; OS03G0621900. DR Gramene; OS03T0621900-00; OS03T0621900-00; OS03G0621900. DR OMA; LKSGWGT; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 143 AA; 15888 MW; 2CF03F5AFF2895C6 CRC64; MSKSGGRCSK EGDDAYFDWN RTNGEDKHFF KVMLGDFHER VTIPNEFLHN FGGKIPKSIK LETRSGLTFD VQVTKNSGRV VLQSGWASYV SAHDLKIGDF LVFKYSGDSQ LKTLIFDSSG CEKVCEKPVD INGSKGISQG RGQ // ID A0A0N7KJD5_ORYSJ Unreviewed; 392 AA. AC A0A0N7KJD5; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=Os04g0519700 {ECO:0000313|EMBL:BAS90113.1}; GN ORFNames=OSNPB_040519700 {ECO:0000313|EMBL:BAS90113.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS90113.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS90113.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014960; BAS90113.1; -; Genomic_DNA. DR UniGene; Os.8374; -. DR EnsemblPlants; OS04T0519700-01; OS04T0519700-01; OS04G0519700. DR Gramene; OS04T0519700-01; OS04T0519700-01; OS04G0519700. DR OMA; FMRRTAN; -. DR Proteomes; UP000059680; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 392 AA; 42878 MW; 31E6F0E15999E654 CRC64; MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL SSIPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR LLQVHLHGTN MRQPQLDHDR VVEFLINWPP RR // ID A0A0N7KJV7_ORYSJ Unreviewed; 920 AA. AC A0A0N7KJV7; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 16. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=Os04g0664400 {ECO:0000313|EMBL:BAS91489.1}; GN ORFNames=OSNPB_040664400 {ECO:0000313|EMBL:BAS91489.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS91489.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS91489.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014960; BAS91489.1; -; Genomic_DNA. DR UniGene; Os.48513; -. DR EnsemblPlants; OS04T0664400-01; OS04T0664400-01; OS04G0664400. DR Gramene; OS04T0664400-01; OS04T0664400-01; OS04G0664400. DR OMA; DYDPMRW; -. DR Proteomes; UP000059680; Chromosome 4. DR ExpressionAtlas; A0A0N7KJV7; baseline and differential. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 852 920 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 920 AA; 101292 MW; 0E024A8568DC1F7D CRC64; MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRATRQQTM LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVIPVARYN KATYMQPSVG MRFAMMFETE ESSKRRYTGT VVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVSVP GMEIGSANMS SFPRAQGNPY GSLQHIPAVG SELAIMLLNQ SGQTLGSPLS FHQSSYSSII QNVKQNYIPP LTVSTSACLT KQESLPSDDA QHQFHMANMQ NGDLEGSEVQ PVIDSISESK LNATSRDPRN TDSYTSRSTS EQNSKGEPRG KTRRSKKGLP HKTVSEKSDL SSAPSWICDN QQVGLESKLV GCDEQVNCGN IEDSSGALTQ GNFVGQPHGH QVEQKGVLSP PKVESSKSPD GGKSVNSFPN QGCFSQFIDG LDWMTQPSYY QDSNVIQPAG VSENIFSSSA DIPPSMIADT METFQASCLS DCLPNSIQEF ISSPDLNSLT FLSPDMQNLE VQLQHDGSNL PSTSNSFVQM SFSEESASQS ANLSGLHMES THRSINTTSC SQPMSTGGFD AGMYSKLPRL KESQILSLPE IHTNSMGTSA CSMDATEYSL DRSAKPMKPP VRTYTKVQKQ GSVGRSIDVT GFRNYHELRS AIACMFGLQG KLEHPGSSEW KLVYVDYEND VLLVGDDPWE // ID A0A0N7KN90_ORYSJ Unreviewed; 1339 AA. AC A0A0N7KN90; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 15. DE SubName: Full=Os07g0273700 protein {ECO:0000313|EMBL:BAT00954.1}; GN Name=Os07g0273700 {ECO:0000313|EMBL:BAT00954.1}; GN ORFNames=OSNPB_070273700 {ECO:0000313|EMBL:BAT00954.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT00954.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT00954.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014963; BAT00954.1; -; Genomic_DNA. DR STRING; 39947.LOC_Os07g17230.1; -. DR EnsemblPlants; OS07T0273700-00; OS07T0273700-00; OS07G0273700. DR Gramene; OS07T0273700-00; OS07T0273700-00; OS07G0273700. DR OMA; TSICIFG; -. DR Proteomes; UP000059680; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1339 AA; 151158 MW; 2EBC7FDE7B53D77A CRC64; MEPGSSSREG EQQEPANERL TATGGGGGGG GGSPVSDQEL SDGEEVSDGE YQAGDDFSGY AVRGRGFVEK EHIFDKVVTP SDVGNLGRLV IPWQHAECYF PRDVPANERE GVVLRFEDDA GNSWRFLYRG SSLTLGWSHF FRKNRLDAGD MVSFYRGASE ATRDRLFIHS KRRMHILPTL GYSDPQVHIN RLFQLLVRVR TMVSSFGKSG SPSPPNSPLP TVQNFTYKAL KDCLQDLHYY SLLSMMGRNH KSQSTSAKIR DTIPTLDALI QLRSLSDPVF RIPAAATSHC ILLCRGVLGI MGFLCSDENM KEDHRMLQVP AFDDLNYSAQ DKITRMKEQT MPSSLADPIY LLPTAIRNLL YLDLSNCSDI VQLPPSLGSS LHMLSALNLS CCYSLRALPD SLVCLYDLQI LLLSFCHNLQ NLPVSFGDLS NLRLLDLSGC RSLRLFPSSF VNLGSLENLN LSDCIRLMGI PQNFEDLQKL EYLNFAGCYR VDLPVYCLTN LVNLKCLTLS NHTDIKDFPY SFTDLKRHLY LSRWWKYNWV HTQCNLKSYR CHQQRIINSL LSDGSDEGDI TSEQSLTSIC IFGERGTGKT ELLHEIYNDQ KILEGFHLRI WINMCDKKRL LEKIIEFTAC AYCYDAPSSI LEETVREELN GKRFLLVLND ADIENQCFWT DVWKVSNVGA AGSALIVTTR SKEVASLFGA MKPYYMNPLS KEECFMVFQE HADCGFDINN DHELTKVGWK IVEKCGGNLL CMKALSGLLW HSKTALSEID SLVGGIVPAL RLCYDLLPSH LKQCFKFCSL FPKDYVFVKH HIIQLWISQG FVYPEEDSQP EDTGLQYFNE FLCRSFFQHC PFSNDHEDKF VMHELFHDLA RSVSKDESFS SEEPFFSLPE NICHLSLVIS DSNTVVLTKE HRHLQSLMVV RRSATEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI VDLPGSIGRM KHLRFLAMNN TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL RHLDVQKEPG NIHVGMPSGL GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG LQNITAGDDA KEANLVGKQF LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL AIQNYPGNSF PNWIKDSGLC MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG QRSNSLTTDG KHAPGFPSLE ILNLWEMYSL QFWNGTRYGD FPQLRGLSIS RCPKLSNLPP LISLLYLSFH CGDQLPALSE FPSLKSLKIE GFQKLKSVSF CPEMPLLQKL EISDCKDCQV PKTSFWRQLA RRLSHVGRV // ID A0A0P0V6C9_ORYSJ Unreviewed; 631 AA. AC A0A0P0V6C9; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=Os01g0670800 {ECO:0000313|EMBL:BAS73614.1}; GN ORFNames=OSNPB_010670800 {ECO:0000313|EMBL:BAS73614.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS73614.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS73614.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014957; BAS73614.1; -; Genomic_DNA. DR UniGene; Os.6367; -. DR EnsemblPlants; OS01T0670800-01; OS01T0670800-01; OS01G0670800. DR Gramene; OS01T0670800-01; OS01T0670800-01; OS01G0670800. DR OMA; READPMW; -. DR Proteomes; UP000059680; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS73614.1}. SQ SEQUENCE 631 AA; 69978 MW; 1038E6D88EFD2AE5 CRC64; CCLQADAATD EVYAQVSLVA DNEEVERRMR EGEDGAACDG EGEDAVKRPA RIPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSLQ RPFQELVAKD LHGTEWRFRH IYRGQPRRHL LTTGWSGFIN KKKLVSGDAV LFLRGEDGEL RLGVRRAAQL KNASPFPALH NQISNTSSLS EVAHAVAVKS IFHIYYNPSC THRLSQSEFI IPYWKFMRSF SQPFSVGMRF KLRYESEDAS ERRRTGIIIG SREADPMWHG SKWKCLVVKW DDDVECRRPN GVSPWEIELS GSVSGSHLST PHSKRLKSCF PQVNPDIVLP NGSVSSDFAE SARFHKVLQG QELLGLKTRD GTVNTASQAT EARNFQYTDE RSCSINMSNN ILGVPRLGVK TPSGNPGFSY HCSGFGESQR FQEVLQGQEV FRPYRGGTLS DACIRGSGFR QPDGNHAPGA AFKWLAPQGC DHHGITTSVL PQASSPSSVL MFPQTSSKMP GLEYIYGCLD RNENSRHFKI GPTQDMTRTD QTLRLWPHLI SGKVLDECTR NEKLHSPVSG AEHESNNKCL NTNGCKIFGI SLTEKAQAGD EVDCGNASYH SRLQSLKPQM PKSLGSSCAT VHEQRPVVGR VVDISAVNTM I // ID A0A0P0V7F2_ORYSJ Unreviewed; 289 AA. AC A0A0P0V7F2; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 14. DE SubName: Full=Os01g0713600 protein {ECO:0000313|EMBL:BAS74002.1}; GN Name=Os01g0713600 {ECO:0000313|EMBL:BAS74002.1}; GN ORFNames=OSNPB_010713600 {ECO:0000313|EMBL:BAS74002.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS74002.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS74002.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014957; BAS74002.1; -; Genomic_DNA. DR UniGene; Os.8988; -. DR ProteinModelPortal; A0A0P0V7F2; -. DR EnsemblPlants; OS01T0713600-01; OS01T0713600-01; OS01G0713600. DR Gramene; OS01T0713600-01; OS01T0713600-01; OS01G0713600. DR OMA; SMDMANP; -. DR Proteomes; UP000059680; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 31858 MW; 2813DD52530B6C38 CRC64; MAGVTSKRRS SSASTSSSSG DGAAVSDRPR GVTRKRRSGG RCPRPAASLR PAAPRPSSHH TAGLRVILQK ELRYSDVSQL GRIVLPKKEA EAYLPILTSK DGKKSLCMHD LQNAQLWTFK YRYWPNNKSR MYVLENTGDY VRTHDLQLGD SIVIYKDDEN NRFVIGAKKA GDQQAATVPQ VDEHISTLFP IFPIAQVDDY LSPMAPQVDI SAFVPHADEN HEIFDGILNS LPEIPVANVR YSDFFDPFDD GMDMANTLNA NANQSASLHV TDDKSGHSLI PNPKSGPHM // ID A0A0P0VEL8_ORYSJ Unreviewed; 1116 AA. AC A0A0P0VEL8; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 14. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=Os02g0141100 {ECO:0000313|EMBL:BAS76922.1}; GN ORFNames=OSNPB_020141100 {ECO:0000313|EMBL:BAS76922.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS76922.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS76922.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014958; BAS76922.1; -; Genomic_DNA. DR EnsemblPlants; OS02T0141100-00; OS02T0141100-00; OS02G0141100. DR Gramene; OS02T0141100-00; OS02T0141100-00; OS02G0141100. DR OMA; TEEMPSC; -. DR Proteomes; UP000059680; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 983 1067 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 568 602 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS76922.1}. SQ SEQUENCE 1116 AA; 124266 MW; F9DB4103299AE8FB CRC64; RGGCGGAGER KAAAINSELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKDVDAHV PSYPNLPSKL ICLLHGVNLH ADPDTDEVYA QMTLQPVNTY GKEALQISEL ALKQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELQARDIHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVIVVR DEKHQLLLGI RRANRQPTNI SSSVLSSDSM HIGVLAAAAH AAANSSPFTI FYNPRASPTE FVIPFAKYQK ALYSNQISLG MRFRMMFETE ELGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESAAG ERRNRVSIWE IEPVAAPFFL CPQPFFGVKR PRQLDDESEM ENLFKRAMPW LGEEVCIKDT QNQNSTAPGL SLVQWMNMNR QQSSSLANTA AQSEYLQALG NPAMQNLAAD ELARQLYVQN NLLQQNCIQF NSPKLPQQMQ TMNDLSKAAI PLNQLGAIIN PQDQKQDAVN HQRQQNSIQV IPLSQAQSNL VQAQVIVQNQ MQQQKPSPTQ NPQRINGQRL LLSHQQKDQN LQLQQQLLLQ QKQQLQQQQQ QQQQNQQQLN KSLGQLVNLA SQQSKLFDEE LQLQILQKLQ QQSLMSQSTS TLSQPPLIQE QQKLITDMQK QLSNSHSLAQ QQMMPQQEIK PSLQATPLLP TVQQEQQQKL LQKQVSLADV SGVAFQPISS TNVIPKTGGA MIISGATQSV VTEEMPSCST SPSTANGNHF TQSTKNRHCI NTERLPPSTA PMLIPTSIDA VTATPLMTKE LPKPNNNVKQ SVVNSKLPNV APGPQNCINH ALQTDNLETS SSATSLCPSR TDGLVHQGFP SSNFNQHQMF KDALPDVEME GVDPSNSGLF GINNDNLLGF PIETEDLLIN ALDSVKYQNH ISTDVENNYP MQKDALQEIS TSMVSQSFGQ SDMAFNSIDS AINDGAFLNK NSWPAAPLLQ RMRTFTKVYK RGAVGRSIDI GRYSGYEELK HALARMFGIE GQLEDRQRIG WKLVYKDHED DILLLGDDPW EEFVNCVRCI RILSPQEVQQ MSLDGDLGSN VLPNQACSSS DGVNGWRPRC DQNPGNPSIG PYDQFE // ID A0A0P0VG04_ORYSJ Unreviewed; 110 AA. AC A0A0P0VG04; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Os02g0197750 protein {ECO:0000313|EMBL:BAS77474.1}; DE Flags: Fragment; GN Name=Os02g0197750 {ECO:0000313|EMBL:BAS77474.1}; GN ORFNames=OSNPB_020197750 {ECO:0000313|EMBL:BAS77474.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS77474.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS77474.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014958; BAS77474.1; -; Genomic_DNA. DR EnsemblPlants; OS02T0197750-00; OS02T0197750-00; OS02G0197750. DR Gramene; OS02T0197750-00; OS02T0197750-00; OS02G0197750. DR OMA; MSAMLNE; -. DR Proteomes; UP000059680; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS77474.1}. SQ SEQUENCE 110 AA; 12205 MW; ACFF82866FEEF1A3 CRC64; TSRSISKNVP VEFQEAHGYA AREKVVLRMR GRSWTVRLKH TKGRRPRRER AVLRYGWHRF CADNGLAVGD TCFFRALRSA GSGAGDVDDG DGDHVLSVTV HKADGGDPLE // ID A0A0P0VL79_ORYSJ Unreviewed; 485 AA. AC A0A0P0VL79; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Os02g0598200 protein {ECO:0000313|EMBL:BAS79571.1}; DE Flags: Fragment; GN Name=Os02g0598200 {ECO:0000313|EMBL:BAS79571.1}; GN ORFNames=OSNPB_020598200 {ECO:0000313|EMBL:BAS79571.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS79571.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS79571.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014958; BAS79571.1; -; Genomic_DNA. DR UniGene; Os.50593; -. DR EnsemblPlants; OS02T0598200-01; OS02T0598200-01; OS02G0598200. DR Gramene; OS02T0598200-01; OS02T0598200-01; OS02G0598200. DR Proteomes; UP000059680; Chromosome 2. DR ExpressionAtlas; A0A0P0VL79; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 375 468 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 375 468 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 485 485 {ECO:0000313|EMBL:BAS79571.1}. SQ SEQUENCE 485 AA; 56212 MW; F520C5FA222A7927 CRC64; MDGAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK YSHHDMKNNL RNDANEEKRK SSDDMRDGDF EEKKKCSRHD MKKNLRNDAN EEKRKSSDDM RDGDDEEKKC SRQDMKKNLR NDADEEKRKS SDDMRDGDDE EKKKRSRHDM KKNSRNDADE EKRKRKRKCS DDLKKSVVND ASKEATSHSD WRKNRKAGSD AEQRGKKLLN GDKKAKSRKV TTPFFEKMRK IKMQRTSNQN GEKNMKSDGD SYKKTVPLSV NKGKMEKDGT NKRTLSNTLV AKERKMRPSD SMEMKMKKKK RDASFVQPDE RTAQTFSTKN KEKKRKAPST PLKREQKERV ASSDNKKETK KACIVAIGNE KKNCRDGKKK KRKAAFAFFK FVRDEFEELL FIPPAVAPSL KDLIDRHVYL EDSEGKCSKI RLSVVDGSLA FYEGWNSFVS EHCIKWGEFL LFEYTPESTF SVRVFGIDSC ERLHFSVKSG GKGAV // ID A0A0P0VLE6_ORYSJ Unreviewed; 968 AA. AC A0A0P0VLE6; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Os02g0598200 protein {ECO:0000313|EMBL:BAS79570.1}; GN Name=Os02g0598200 {ECO:0000313|EMBL:BAS79570.1}; GN ORFNames=OSNPB_020598200 {ECO:0000313|EMBL:BAS79570.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS79570.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS79570.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014958; BAS79570.1; -; Genomic_DNA. DR UniGene; Os.50593; -. DR EnsemblPlants; OS02T0598200-03; OS02T0598200-03; OS02G0598200. DR Gramene; OS02T0598200-03; OS02T0598200-03; OS02G0598200. DR Proteomes; UP000059680; Chromosome 2. DR ExpressionAtlas; A0A0P0VLE6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 295 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 906 968 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 295 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 906 968 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 968 AA; 109003 MW; B0E9B88427F9CB96 CRC64; MKKNLRNDAN EEKRKSSDDM RDGDDEEKKC SRQDMKKNLR NDADEEKRKS SDDMRDGDDE EKKKRSRHDM KKNSRNDADE EKRKRKRKCS DDLKKSVVND ASKEATSHSD WRKNRKAGSD AEQRGKKLLN GDKKAKSRKV TTPFFEKMRK IKMQRTSNQN GEKNMKSDGD SYKKTVPLSV NKGKMEKDGT NKRTLSNTLV AKERKMRPSD SMEMKMKKKK RDASFVQPDE RTAQTFSTKN KEKKRKAPST PLKREQKERV ASSDNKKETK KACIVAIGNE KKNCRDGKKK KRKAAFAFFK FVRDEFEELL FIPPAVAPSL KDLIDRHVYL EDSEGKCSKI RLSVVDGSLA FYEGWNSFVS EHCIKWGEFL LFEYTPESTF SVRVFGIDSC ERLHFSVKSG GKGAVKKRKE RHTLSDDLIS HYNGQYQDSE DIHDGPNVSG ESPRSKEPKI TVDAEIGTRN LVAKSINAAS ETQDSERVES GIGYGSLGAL GNKVRNLSNG ECDTRSDSVF CIQEKTRRSE VIIISDEAYS TQVDEDTMKQ TAPSEASEIH HVTINTQKDL ERVVDGVCCE SSVALNNKMG NLILGEPKNK NISPACSTEK TNGSEITPTT GVIPLTQENI DTVKLNTLSC FEEDRSTTRE SELAAAIPTT SETHDSDKDL GQKHQRNSVQ VNSIIAVDKY PNDSEMNISG NIFRIYEAPA GTRCLEKWKR GIVNGRAALD DIGQVRPEKT QKAGEKLVGN CGAMGESPVD LRIESDVTDT CLKPILNIPI EELSILDSVS ISKCGRSRTE VNHLFNQKGA TVQLQTKKEP LKPTGSSGNR KGDKIAVSVN RVFAHQSELQ IPQQENGNFT SCVTPVALLP AKAELLDLDD HSLQFCIPST IQKWLELPKS LPITCRQKGR YDRNVVILKD PMRRLWPVFY HDKPVFVGFT AGWKPFAAAN NLQAGDVCKF VKEMDEDELA FQVYITRK // ID A0A0P0VQ12_ORYSJ Unreviewed; 253 AA. AC A0A0P0VQ12; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Os02g0764100 protein {ECO:0000313|EMBL:BAS81053.1}; DE Flags: Fragment; GN Name=Os02g0764100 {ECO:0000313|EMBL:BAS81053.1}; GN ORFNames=OSNPB_020764100 {ECO:0000313|EMBL:BAS81053.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS81053.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS81053.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014958; BAS81053.1; -; Genomic_DNA. DR EnsemblPlants; OS02T0764100-01; OS02T0764100-01; OS02G0764100. DR Gramene; OS02T0764100-01; OS02T0764100-01; OS02G0764100. DR Proteomes; UP000059680; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 120 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS81053.1}. SQ SEQUENCE 253 AA; 27449 MW; 077D1E4B1FAAFC22 CRC64; FSPPFLFPVR TPRRQRRPGA GVATATAPPP ALSPSWPTIA QAPPGAPPGA RHGRPRAAHA VVGAGATVRE GRDAQRRRQA QPPAGAQAAR GEALPAAADE LRRLRHRRRG HLQLCKGVLL NFEDGEGKVW RFRYSCWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSGSA YGPDKLLFID CKKNNTAAAT GDEKPITSGE ATRVVRLFGM DITGGGGDCR KRERAVEMGQ EAFLMKRQCV VHQRTPALGA LLL // ID A0A0P0W088_ORYSJ Unreviewed; 515 AA. AC A0A0P0W088; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Os03g0619800 protein {ECO:0000313|EMBL:BAS85299.1}; GN Name=Os03g0619800 {ECO:0000313|EMBL:BAS85299.1}; GN ORFNames=OSNPB_030619800 {ECO:0000313|EMBL:BAS85299.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS85299.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS85299.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014959; BAS85299.1; -; Genomic_DNA. DR EnsemblPlants; OS03T0619800-00; OS03T0619800-00; OS03G0619800. DR Gramene; OS03T0619800-00; OS03T0619800-00; OS03G0619800. DR OMA; MAGGNTH; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 264 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 447 508 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 264 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 447 508 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 515 AA; 58769 MW; 4C6E3DEEEDD05AA0 CRC64; MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGNIF YIIWKCASNF GLLYMQFTQE IEPLGKFCTG EDSPSGYEFH ESVEPQTPSG SDYVLSRRTY LSEAQKERVV THIQDIQPEI TVFVAVMKKC NLQSPAPYLV ISSRYASVHF PRETATITLQ RPSKRKKWYP RFYKRIDKSD HMLRGQWQNF VHDNCLQEED ICLFVPTKGG RNFAFTVHLL QAESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS EIPICVATIS KLAGSGGKGK FRGLLSSRYA ASYLPDKNHQ TLVLQCKGMI WQINLVVRRR YTKGKRWFLT AGWRKFAHDN RLRVGDFCLF ELKKKKKLTM EVHIISNLQR YPEVE // ID A0A0P0W094_ORYSJ Unreviewed; 547 AA. AC A0A0P0W094; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os03g0621600 protein {ECO:0000313|EMBL:BAS85310.1}; GN Name=Os03g0621600 {ECO:0000313|EMBL:BAS85310.1}; GN ORFNames=OSNPB_030621600 {ECO:0000313|EMBL:BAS85310.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS85310.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS85310.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014959; BAS85310.1; -; Genomic_DNA. DR EnsemblPlants; OS03T0621600-00; OS03T0621600-00; OS03G0621600. DR Gramene; OS03T0621600-00; OS03T0621600-00; OS03G0621600. DR OMA; GRFLTIR; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 334 427 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 334 427 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 547 AA; 62146 MW; 81AD886FD12EA5BD CRC64; MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQTSKNFTP TGLHHRGSVE NYLHGLSEEV AGVTLCGQKM RKLNTRSTAR DDQEKYFFKV MIGDFHKRMT IPDKFARHFK GVISKTIKLE PRSGYTFDVQ VTKKLNILVL GSGWESFVNA HDLNMGDFLV FKYNGDFLLQ VLIFDPSGCE KSTSCSMENA IDHVGQGWKE HNDISTSYHD QPKGNKHWMQ KDSSSKGNKI GNTRSSNTPS KFSGCILPRG TCLPVVQEKK MKEKIQAIHS KTPMYGNVMT KCNVSGSPCV LVSNSIS // ID A0A0P0W0A3_ORYSJ Unreviewed; 165 AA. AC A0A0P0W0A3; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os03g0621650 protein {ECO:0000313|EMBL:BAS85311.1}; GN Name=Os03g0621650 {ECO:0000313|EMBL:BAS85311.1}; GN ORFNames=OSNPB_030621650 {ECO:0000313|EMBL:BAS85311.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS85311.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS85311.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014959; BAS85311.1; -; Genomic_DNA. DR EnsemblPlants; OS03T0621650-00; OS03T0621650-00; OS03G0621650. DR Gramene; OS03T0621650-00; OS03T0621650-00; OS03G0621650. DR OMA; MEEPPGN; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 165 AA; 18959 MW; 537BFB2F89EE1424 CRC64; MCSYKMRRPG ARCREGHAHF NGNHIDGQYK NFFKVMIGRF RERMIIPNEF LQYFRGKIPR TIKLQLRDGC TYDVQVTKNL GKISLQSGWK AFVTAHDLQM GDFLVFSYDG ISKLKVLIFG PSGCEKVHSR STLKNATHCG EKWEEPLHIS SNSHDLPVKS PQNVL // ID A0A0P0W132_ORYSJ Unreviewed; 253 AA. AC A0A0P0W132; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os03g0619850 protein {ECO:0000313|EMBL:BAS85300.1}; DE Flags: Fragment; GN Name=Os03g0619850 {ECO:0000313|EMBL:BAS85300.1}; GN ORFNames=OSNPB_030619850 {ECO:0000313|EMBL:BAS85300.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS85300.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS85300.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014959; BAS85300.1; -; Genomic_DNA. DR EnsemblPlants; OS03T0619850-00; OS03T0619850-00; OS03G0619850. DR Gramene; OS03T0619850-00; OS03T0619850-00; OS03G0619850. DR OMA; ANSTEMS; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 253 253 {ECO:0000313|EMBL:BAS85300.1}. SQ SEQUENCE 253 AA; 28186 MW; 338853D7D61A25FC CRC64; MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTTDSMHS MIIPDRFVNH FGGKIPGTIK LESPNGILYV VEVTECMNKT VLQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG SENVSLKSNR NGVSDESQES EDSEGPAGPP YILSWKSKSR LSSLQKKIIK EKVRSIQSEV PIYVAIMNKS NIGLTSSPCQ LELGARYAAA VHLPDRRQAV VLQRGAAMGH RDADQERQMH HQAVPDQWLE QVR // ID A0A0P0W8T7_ORYSJ Unreviewed; 239 AA. AC A0A0P0W8T7; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Os04g0347400 protein {ECO:0000313|EMBL:BAS88696.1}; DE Flags: Fragment; GN Name=Os04g0347400 {ECO:0000313|EMBL:BAS88696.1}; GN ORFNames=OSNPB_040347400 {ECO:0000313|EMBL:BAS88696.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS88696.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS88696.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014960; BAS88696.1; -; Genomic_DNA. DR EnsemblPlants; OS04T0347400-00; OS04T0347400-00; OS04G0347400. DR Gramene; OS04T0347400-00; OS04T0347400-00; OS04G0347400. DR Proteomes; UP000059680; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS88696.1}. SQ SEQUENCE 239 AA; 27471 MW; 9A8B94BCAF6C2F3A CRC64; DFGARPAVVT TRSGRARDAS NKPQFLRVLL PGFMEKMRIP AKFVQHYIAE EHLNIHMASI LSPLGKFWRI ELEKDELGMF FKGGWLQFLS FHGISPGDVV LLRHEGNLVF KIKVFGINGC KKDLKTKDDI TIQQNCKNQL QEIPCSIKGS RKKGRETKRP KKSKSIYEIG PPSWIKKEIS NYMLENGNIT KPIHCTSTVF ARDLLQVDRA RRRNHHHSND QQLERKKQQQ QQQVMGGGL // ID A0A0P0W8Z4_ORYSJ Unreviewed; 169 AA. AC A0A0P0W8Z4; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Os04g0346900 protein {ECO:0000313|EMBL:BAS88694.1}; GN Name=Os04g0346900 {ECO:0000313|EMBL:BAS88694.1}; GN ORFNames=OSNPB_040346900 {ECO:0000313|EMBL:BAS88694.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS88694.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS88694.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014960; BAS88694.1; -; Genomic_DNA. DR EnsemblPlants; OS04T0346900-00; OS04T0346900-00; OS04G0346900. DR Gramene; OS04T0346900-00; OS04T0346900-00; OS04G0346900. DR OMA; KIWRVEI; -. DR Proteomes; UP000059680; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 169 AA; 17253 MW; 93099464F199C302 CRC64; MITPDSSQHH RPAEKAPRVV VSPAAAMGSR GDHGGGGGGR GAARATQLKV LVPSSFRKMR ICDELAAQLG VGVGGGGAPR AATARVASPL GKAWDVGVVR DGDGRAFLGR GWAEFAAAHG LGVGWFVVLR HGGGVLAVEA FDTTCCLRVF GAPPAAMTFR SGQGNRHFT // ID A0A0P0W9E4_ORYSJ Unreviewed; 189 AA. AC A0A0P0W9E4; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os04g0386900 protein {ECO:0000313|EMBL:BAS88935.1}; DE Flags: Fragment; GN Name=Os04g0386900 {ECO:0000313|EMBL:BAS88935.1}; GN ORFNames=OSNPB_040386900 {ECO:0000313|EMBL:BAS88935.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS88935.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS88935.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014960; BAS88935.1; -; Genomic_DNA. DR UniGene; Os.50181; -. DR EnsemblPlants; OS04T0386900-01; OS04T0386900-01; OS04G0386900. DR Gramene; OS04T0386900-01; OS04T0386900-01; OS04G0386900. DR OMA; HERVEFR; -. DR Proteomes; UP000059680; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS88935.1}. SQ SEQUENCE 189 AA; 20086 MW; 116836A96BCF4FAA CRC64; TELRCSSPES SGDAGAEDPA AVDAAEESGG EGGSGHIAAG TEAAPPRPPE PEPEKVARHG VLPLLGKPYF TCIMCKSHVQ PPFQVVVPRS FAPLLPSRTT PATLSWRGRS WGMRFTGGRL IQRLEAGWRG FAVDNDLRLG DGCVFELLVG GGGEQERVEF RVQVLRAEIP ARIRGRAGGY TSATPIVID // ID A0A0P0WDY0_ORYSJ Unreviewed; 293 AA. AC A0A0P0WDY0; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Os04g0581400 protein {ECO:0000313|EMBL:BAS90655.1}; GN Name=Os04g0581400 {ECO:0000313|EMBL:BAS90655.1}; GN ORFNames=OSNPB_040581400 {ECO:0000313|EMBL:BAS90655.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS90655.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS90655.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014960; BAS90655.1; -; Genomic_DNA. DR UniGene; Os.73736; -. DR EnsemblPlants; OS04T0581400-01; OS04T0581400-01; OS04G0581400. DR Gramene; OS04T0581400-01; OS04T0581400-01; OS04G0581400. DR Proteomes; UP000059680; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 31788 MW; 3FDEB56C4050F16E CRC64; MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA SSCRPRRPPR STSITAFARA STSATSTPLC RRGSSSSSAP QGRGFISTRP CHRRRRHLRL LTNSTLRCTT RAP // ID A0A0P0WG28_ORYSJ Unreviewed; 736 AA. AC A0A0P0WG28; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=Os04g0664400 {ECO:0000313|EMBL:BAS91490.1}; GN ORFNames=OSNPB_040664400 {ECO:0000313|EMBL:BAS91490.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS91490.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS91490.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014960; BAS91490.1; -; Genomic_DNA. DR UniGene; Os.48513; -. DR EnsemblPlants; OS04T0664400-02; OS04T0664400-02; OS04G0664400. DR Gramene; OS04T0664400-02; OS04T0664400-02; OS04G0664400. DR Proteomes; UP000059680; Chromosome 4. DR ExpressionAtlas; A0A0P0WG28; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 736 736 {ECO:0000313|EMBL:BAS91490.1}. SQ SEQUENCE 736 AA; 81023 MW; A65463E0C1865EEA CRC64; MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRATRQQTM LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVIPVARYN KATYMQPSVG MRFAMMFETE ESSKRRYTGT VVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVSVP GMEIGSANMS SFPRAQGNPY GSLQHIPAVG SELAIMLLNQ SGQTLGSPLS FHQSSYSSII QNVKQNYIPP LTVSTSACLT KQESLPSDDA QHQFHMANMQ NGDLEGSEVQ PVIDSISESK LNATSRDPRN TDSYTSRSTS EQNSKGEPRG KTRRSKKGLP HKTVSEKSDL SSAPSWICDN QQVGLESKLV GCDEQVNCGN IEDSSGALTQ GNFVGQPHGH QVEQKGVLSP PKVESSKSPD GGKSVNSFPN QGCFSQFIDG LDWMTQPSYY QDSNVIQPAG VSENIFSSSA DIPPSMIADT METFQASCLS DCLPNSIQEF ISSPDLNSLT FLSPDM // ID A0A0P0WPL8_ORYSJ Unreviewed; 622 AA. AC A0A0P0WPL8; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=Os05g0515400 {ECO:0000313|EMBL:BAS94880.1}; GN ORFNames=OSNPB_050515400 {ECO:0000313|EMBL:BAS94880.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS94880.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS94880.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014961; BAS94880.1; -; Genomic_DNA. DR UniGene; Os.50772; -. DR EnsemblPlants; OS05T0515400-01; OS05T0515400-01; OS05G0515400. DR Gramene; OS05T0515400-01; OS05T0515400-01; OS05G0515400. DR OMA; HICFNPR; -. DR Proteomes; UP000059680; Chromosome 5. DR ExpressionAtlas; A0A0P0WPL8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS94880.1}. SQ SEQUENCE 622 AA; 67243 MW; 630412495DBBE815 CRC64; PEHGGGGSGG GGGGGGADAA TDEVYARLAL VAEGEMLQRN FREGGGEDGA GEMEGCDAEK KPRMPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK TVRPSQELIA VDLHGTQWKF RHIYRGQPRR HLLTIGWSSF VNRKKLVSGD AVLFLRGDDG QLRLGVRRAV QLRNEALFEP VNSSDSKLRI LSSVASSLEN KSVFHICFNP RSGASEFIVP YWRLLKSLNH PFSIGMRFRV CYESEDANER SAGLISGISE VDPIRWPGSR WKCLLVRWDD STDSSHQNRV SPWEIERVGG SVSVTHSLSS GSKRTKLHFP QGSLDTPFLN GNGHPDSMGT ENFHRVLQGQ EFRGSRSHGV VCSESPGVPN FQSPDNRRFS ADMRGYMMPA SGPPQRNTEF TYQPIGFSES LGFPEVLQGQ EMSQVVPLFR GATFGARTQN DRVVSANSVH RSAAQSGLLA STLGHPISQF TLSSSKVSSP SSVLMFNQAT APNHETVSGT NNKGMHVSQF ASQEMLSETV TWPGTQRQTP SEITSNQFAL ARIPAPPSGA ESGLPKRDAG RSSCRLFGFS LTGNMLGEDG EGLDDGAIEA GCENPPVLEL FGHSHSTPGA LHALCAAAPL GM // ID A0A0P0WPQ8_ORYSJ Unreviewed; 343 AA. AC A0A0P0WPQ8; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os05g0549800 protein {ECO:0000313|EMBL:BAS95202.1}; DE Flags: Fragment; GN Name=Os05g0549800 {ECO:0000313|EMBL:BAS95202.1}; GN ORFNames=OSNPB_050549800 {ECO:0000313|EMBL:BAS95202.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS95202.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS95202.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014961; BAS95202.1; -; Genomic_DNA. DR UniGene; Os.9064; -. DR EnsemblPlants; OS05T0549800-01; OS05T0549800-01; OS05G0549800. DR Gramene; OS05T0549800-01; OS05T0549800-01; OS05G0549800. DR OMA; KHTYLEE; -. DR Proteomes; UP000059680; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 72 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 142 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 72 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 142 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAS95202.1}. SQ SEQUENCE 343 AA; 36628 MW; 98BCC88370A4FC3C CRC64; SGGERRGGGG GKLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGEAE AARAYDVAAQ RFRGRDAVTN FRPLAESDPE AAVELRFLAS RSKAEVVDML RKHTYLEELT QNKRAFAAIS PPPPKHPASS PTSSSAAREH LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL QLPPPTTTSS VAAAADAAAG GGDCKGVLLN FEDAAGKVWK FRYSYWNSSQ SYVLTKGWSR FVKEKGLHAG DAVGFYRAAG KNAQLFIDCK VRAKPTTAAA AAAFLSAVAA AAAPPPAVKA IRLFGVDLLT AAAPELQDAG GAAMTKSKRA MDAMAESQAH VVFKKQCIEL ALT // ID A0A0P0WRZ6_ORYSJ Unreviewed; 120 AA. AC A0A0P0WRZ6; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Os06g0107800 protein {ECO:0000313|EMBL:BAS95766.1}; GN Name=Os06g0107800 {ECO:0000313|EMBL:BAS95766.1}; GN ORFNames=OSNPB_060107800 {ECO:0000313|EMBL:BAS95766.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAS95766.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAS95766.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014962; BAS95766.1; -; Genomic_DNA. DR UniGene; Os.36672; -. DR EnsemblPlants; OS06T0107800-01; OS06T0107800-01; OS06G0107800. DR Gramene; OS06T0107800-01; OS06T0107800-01; OS06G0107800. DR Proteomes; UP000059680; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 120 AA; 13329 MW; C5214E4125F4F57B CRC64; MADARGGDST WRFRYSYWSS SQSYVITKGW SRYVRDKRLA AGDTVSFCRA GARLFIDCRK RAASVSSSSL VPPALIKVQL PPSRPVVDEE EAACGRRCLR LFGVDLQLRA DASPALDLQL // ID A0A0P0X2W6_ORYSJ Unreviewed; 358 AA. AC A0A0P0X2W6; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 13. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=Os07g0183100 {ECO:0000313|EMBL:BAT00340.1}; GN ORFNames=OSNPB_070183100 {ECO:0000313|EMBL:BAT00340.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT00340.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT00340.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014963; BAT00340.1; -; Genomic_DNA. DR EnsemblPlants; OS07T0183100-00; OS07T0183100-00; OS07G0183100. DR Gramene; OS07T0183100-00; OS07T0183100-00; OS07G0183100. DR Proteomes; UP000059680; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 39679 MW; F110C9FC00BC3F67 CRC64; MAQPPDAAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKKRCR YMLGDLGVND NDGWRGFVKA KRLATRDTVV FMRRGGGDGD GDGELLVGVR RAPRARGGHH PRPGVEDNKV VSEVWLAMQG VTPFEVTYYP REGTFEFVVS RDEYIGFSFS PFYPFVPGTT VHLRMNPLQI AQSISGTVRT FDHLRPWRML EVLISSSHHP LPTQSDLFID QFDRCMLR // ID A0A0P0XIX0_ORYSJ Unreviewed; 637 AA. AC A0A0P0XIX0; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN Name=Os08g0520550 {ECO:0000313|EMBL:BAT06294.1}; GN ORFNames=OSNPB_080520550 {ECO:0000313|EMBL:BAT06294.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT06294.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT06294.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014964; BAT06294.1; -; Genomic_DNA. DR UniGene; Os.48218; -. DR UniGene; Os.89284; -. DR EnsemblPlants; OS08T0520550-01; OS08T0520550-01; OS08G0520550. DR Gramene; OS08T0520550-01; OS08T0520550-01; OS08G0520550. DR OMA; AYRFMRE; -. DR Proteomes; UP000059680; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 637 637 {ECO:0000313|EMBL:BAT06294.1}. SQ SEQUENCE 637 AA; 71164 MW; F9A2F697309129F1 CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ QPHVQHQQIP QQLHHQQQQT QQLQPVQQVQ QSVQEHQ // ID A0A0P0XZ58_ORYSJ Unreviewed; 270 AA. AC A0A0P0XZ58; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 12. DE SubName: Full=Os11g0156000 protein {ECO:0000313|EMBL:BAT12757.1}; DE Flags: Fragment; GN Name=Os11g0156000 {ECO:0000313|EMBL:BAT12757.1}; GN ORFNames=OSNPB_110156000 {ECO:0000313|EMBL:BAT12757.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT12757.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT12757.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014967; BAT12757.1; -; Genomic_DNA. DR UniGene; Os.53019; -. DR EnsemblPlants; OS11T0156000-02; OS11T0156000-02; OS11G0156000. DR Gramene; OS11T0156000-02; OS11T0156000-02; OS11G0156000. DR Proteomes; UP000059680; Chromosome 11. DR ExpressionAtlas; A0A0P0XZ58; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAT12757.1}. SQ SEQUENCE 270 AA; 29940 MW; 9D4C303022556FD0 CRC64; QEQPQSWPWG VAMYANFHYH HHYEKEHMFE KPLTPSDVGK LNRLVIPKQH AERYFPLGAG DAADKGLILS FEDEAGAPWR FRYSYWTSSQ SYVLTKGWSR YVKEKRLDAG DVVHFERVRG SFGVGDRLFI GCRRRGDAAA AQTPAPPPAV RVAPAAQNAG EQQPWSPMCY STSGGGSYPT SPANSYAYRR AADHDHGDMH HADESPRDTD SPSFSAGSAP SRRLRLFGVN LDCGPEPEAD TTAAATMYGY MHQQSSYAAM SAVPSYWGNS // ID A0A0P0Y2Y4_ORYSJ Unreviewed; 366 AA. AC A0A0P0Y2Y4; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 05-JUL-2017, entry version 15. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=Os11g0523800 {ECO:0000313|EMBL:BAT14229.1}; GN ORFNames=OSNPB_110523800 {ECO:0000313|EMBL:BAT14229.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT14229.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT14229.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014967; BAT14229.1; -; Genomic_DNA. DR UniGene; Os.10817; -. DR EnsemblPlants; OS11T0523800-01; OS11T0523800-01; OS11G0523800. DR Gramene; OS11T0523800-01; OS11T0523800-01; OS11G0523800. DR OMA; TAWHANL; -. DR Proteomes; UP000059680; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 40376 MW; 3F069DD5033ECE20 CRC64; MATAEVGGGG GEGDAAAAAV ARGGGGGGGG GGGEDALFTE LWSACAGPLV TVPRVGEKVF YFPQGHIEQV EASTNQVGEQ RMQLYNLPWK ILCEVMNVEL KAEPDTDEVY AQLTLLPESK QQEDNGSTEE EVPSAPAAGH VRPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG ELRVGVRRAM RQQTNVPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPAEFVVP YDRYMESLKQ NYSIGMRFKM RFEGEEAPEQ RFTGTIVGMG DSDPAGWPES KWRSLKVYFF RHFPFK // ID A0A0P0YC05_ORYSJ Unreviewed; 311 AA. AC A0A0P0YC05; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os12g0591300 protein {ECO:0000313|EMBL:BAT17883.1}; DE Flags: Fragment; GN Name=Os12g0591300 {ECO:0000313|EMBL:BAT17883.1}; GN ORFNames=OSNPB_120591300 {ECO:0000313|EMBL:BAT17883.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT17883.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT17883.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014968; BAT17883.1; -; Genomic_DNA. DR UniGene; Os.70079; -. DR EnsemblPlants; OS12T0591300-01; OS12T0591300-01; OS12G0591300. DR Gramene; OS12T0591300-01; OS12T0591300-01; OS12G0591300. DR OMA; REGHICI; -. DR Proteomes; UP000059680; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 209 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 209 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:BAT17883.1}. SQ SEQUENCE 311 AA; 35524 MW; 9F43FABA0E300603 CRC64; QRPDVPSSED IKDPMSSGGL QKSKKSCYVL PMLYNMTSAQ ESEVLALEKK IQPQIPLYIT AMDKTSVASG SLVFCKDYAV RYLLDQNRTI KLCQSGGSKT WDISLDMDTD DLYALSTGWL DFFRCNLLQE GDICVFEASK SKRGVALTFH PFKESHCPKS SEYTLSTKSP TRRVPKRDYF ATNLTNLTDQ QERKVKNKIK SIQSDIPIFL SVMRSSNCTR QSSLCFSVKY ASKYLPHKDQ NMRLRLPETK YKCKAALHID TSTNLHKLLK GWGKFVNDNK LEIHDICLFQ LMKNKKKLTM TVHIIRKGEC S // ID A0A0P0YC10_ORYSJ Unreviewed; 186 AA. AC A0A0P0YC10; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 14. DE SubName: Full=Os12g0592300 protein {ECO:0000313|EMBL:BAT17888.1}; GN Name=Os12g0592300 {ECO:0000313|EMBL:BAT17888.1}; GN ORFNames=OSNPB_120592300 {ECO:0000313|EMBL:BAT17888.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT17888.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT17888.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014968; BAT17888.1; -; Genomic_DNA. DR EnsemblPlants; OS12T0592300-00; OS12T0592300-00; OS12G0592300. DR Gramene; OS12T0592300-00; OS12T0592300-00; OS12G0592300. DR OMA; RFANCLT; -. DR Proteomes; UP000059680; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 186 AA; 20821 MW; 099BFD60965C138A CRC64; MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL KAPSGETWRV SVEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT KTNPRA // ID A0A0P0YD97_ORYSJ Unreviewed; 347 AA. AC A0A0P0YD97; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 13. DE SubName: Full=Os12g0591500 protein {ECO:0000313|EMBL:BAT17884.1}; GN Name=Os12g0591500 {ECO:0000313|EMBL:BAT17884.1}; GN ORFNames=OSNPB_120591500 {ECO:0000313|EMBL:BAT17884.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAT17884.1, ECO:0000313|Proteomes:UP000059680}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAT17884.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP014968; BAT17884.1; -; Genomic_DNA. DR EnsemblPlants; OS12T0591500-00; OS12T0591500-00; OS12G0591500. DR Gramene; OS12T0591500-00; OS12T0591500-00; OS12G0591500. DR OMA; EYLPRES; -. DR Proteomes; UP000059680; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 39314 MW; A2308D14BFE6C24E CRC64; MEKSHRVCKN CVANHYWLHM DNHGKSFIKV MITDFKNGVT IPAKFARNFG GQMSGTVKLE TRNGKTYEVQ VAKELNNLVL RSGWERFASA YELEKGDILV FIYSGNSHFK VWIYDPSACE KGLPCIITEQ LPRVQQRSIS HNNHTQLKRN AKSAKLYVDS SGHSKETSEI NPANSPSWKP TERVPSSEEL DEPVDLANVQ KATKSFYSLP RMCNMTSAQK AEVDALEKRI KPQIPFYITV MDKASATDGL LAISKDYAVS YLLDKNETIK LCHSGRSMTW DISLDIDTDD QYALSTGWLD FIRNNHLQEG DICVFEASKN KRGVALIFHP LKQSHHPKPP DKDYGNL // ID A0A0Q3NU91_SETIT Unreviewed; 285 AA. AC A0A0Q3NU91; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96765.1}; DE Flags: Fragment; GN ORFNames=SETIT_0100262mg {ECO:0000313|EMBL:KQK96765.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EMBL:KQK96765.1, ECO:0000313|Proteomes:UP000004995}; RN [1] {ECO:0000313|EMBL:KQK96765.1, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|Proteomes:UP000004995}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96765.1; -; Genomic_DNA. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 233 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 233 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK96765.1}. SQ SEQUENCE 285 AA; 31898 MW; EF9AD8017E573BFF CRC64; VTSPTEATGA TFYEETEGYT RGSLLLSLGT GGIRFSNLSP IELIEATVSS RDDARKQQFI SAHPTNFMEK MLIPAKFVQQ YLPKEHLNNQ SAIVLGPIGK VHSIKLEMGQ SDLFFAGGWS QFLAFHDITE ANALLLRYEG NMVFTVKIFG PNGCPIESKH KEVRVPQNIE EQQEAPSASI QKCCENDLPI SDGEKKPQGS ITSLKKASPR VKCIYKIGPP AWIRKEMSTK TIRKYIVHVL PYKGSSHQLG SGWRRFCQEN KIKEGDVCTF NIIDSTLWHV VIARR // ID A0A0Q3PMI2_SETIT Unreviewed; 359 AA. AC A0A0Q3PMI2; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 07-JUN-2017, entry version 12. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL06536.1}; DE Flags: Fragment; GN ORFNames=SETIT_004045mg {ECO:0000313|EMBL:KQL06536.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EMBL:KQL06536.1, ECO:0000313|Proteomes:UP000004995}; RN [1] {ECO:0000313|EMBL:KQL06536.1, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|Proteomes:UP000004995}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL06536.1; -; Genomic_DNA. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 135 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 214 323 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 135 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 214 323 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 359 359 {ECO:0000313|EMBL:KQL06536.1}. SQ SEQUENCE 359 AA; 37240 MW; DD93C4CE98487D37 CRC64; MDSASSLVDD TSSGGGASTD KLRALAAAAA SAGAPLERMG SGASAVVDAA EPGAEADSAA AAAAGAGAGV GVGGKLPSSR YKGVVPQPNG RWGAQIYERH QRVWLGTFAG ETDAARAYDV AAQRFRGRDA VTNFRPLADA DPDAAAELRF LVSRSKAEVV DMLRKHTYFD ELAQNKRAFA AAASAPTTSA LANAHSSPSP SPAAAAAAAR EHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLQLPSAGGE SKGVLLNFED AGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLQAGDVV GFYRSAAAAG ADSKLFIACR LRPNGDVAAL TSPVVEVEPS SAPVAKAVRL FGVDLLSAP // ID A0A0Q3RBD6_SETIT Unreviewed; 317 AA. AC A0A0Q3RBD6; DT 20-JAN-2016, integrated into UniProtKB/TrEMBL. DT 20-JAN-2016, sequence version 1. DT 10-MAY-2017, entry version 11. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96764.1}; DE Flags: Fragment; GN ORFNames=SETIT_0100262mg {ECO:0000313|EMBL:KQK96764.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EMBL:KQK96764.1, ECO:0000313|Proteomes:UP000004995}; RN [1] {ECO:0000313|EMBL:KQK96764.1, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|Proteomes:UP000004995}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96764.1; -; Genomic_DNA. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 222 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 222 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK96764.1}. SQ SEQUENCE 317 AA; 35315 MW; AFE856B902F409C0 CRC64; VTSPTEATGA TFYEETEGYT RGSLLLSLGT GGIRFSNLSP IELIEATVSS RDDARKQQFI SAHPTNFMEK MLIPAKFVQQ YLPKEHLNNQ SAIVLGPIGK VHSIKLEMGQ SDLFFAGGWS QFLAFHDITE ANALLLRYEG NMVFTVKIFG PNGCPIESKH KEVRVPQNIE EQQEAPSASI QKCCENDLPI SDGEKKPQGS ITSLKKASPR VKCIYKIGPP AWIRKEMSTK TIRKYIQPLP AAFCNAIGFQ EACTITFKTS LSSTSSWQVH VLPYKGSSHQ LGSGWRRFCQ ENKIKEGDVC TFNIIDSTLW HVVIARR // ID A0A0U9HKF6_KLEFL Unreviewed; 1543 AA. AC A0A0U9HKF6; DT 16-MAR-2016, integrated into UniProtKB/TrEMBL. DT 16-MAR-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:GAQ88004.1}; GN ORFNames=KFL_003930070 {ECO:0000313|EMBL:GAQ88004.1}; OS Klebsormidium flaccidum (Filamentous green alga) (Ulothrix flaccida). OC Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; OC Klebsormidiales; Klebsormidiaceae; Klebsormidium. OX NCBI_TaxID=3175 {ECO:0000313|EMBL:GAQ88004.1, ECO:0000313|Proteomes:UP000054558}; RN [1] {ECO:0000313|EMBL:GAQ88004.1, ECO:0000313|Proteomes:UP000054558} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=NIES-2285 {ECO:0000313|EMBL:GAQ88004.1, RC ECO:0000313|Proteomes:UP000054558}; RX PubMed=24865297; DOI=10.1038/ncomms4978; RA Hori K., Maruyama F., Fujisawa T., Togashi T., Yamamoto N., Seo M., RA Sato S., Yamada T., Mori H., Tajima N., Moriyama T., Ikeuchi M., RA Watanabe M., Wada H., Kobayashi K., Saito M., Masuda T., RA Sasaki-Sekimoto Y., Mashiguchi K., Awai K., Shimojima M., Masuda S., RA Iwai M., Nobusawa T., Narise T., Kondo S., Saito H., Sato R., RA Murakawa M., Ihara Y., Oshima-Yamada Y., Ohtaka K., Satoh M., RA Sonobe K., Ishii M., Ohtani R., Kanamori-Sato M., Honoki R., RA Miyazaki D., Mochizuki H., Umetsu J., Higashi K., Shibata D., RA Kamiya Y., Sato N., Nakamura Y., Tabata S., Ida S., Kurokawa K., RA Ohta H.; RT "Klebsormidium flaccidum genome reveals primary factors for plant RT terrestrial adaptation."; RL Nat. Commun. 5:3978-3978(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DF237342; GAQ88004.1; -; Genomic_DNA. DR Proteomes; UP000054558; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054558}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000054558}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 634 742 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1122 1213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 634 742 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1122 1213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1543 AA; 160685 MW; 19FAF1C3D06D6EA9 CRC64; MPSSGRRMVA LFHPLIVKQE PLDEAPQTSH DPSFARPPFL EVKLEVFKES SQSRPTPTSS QSSTPASPQR SALIDPSKGP EGLHEAKEGE FRGVRETKDV ASDKASAVEA ENSVRDLDPW GRQMHSQSAT AGSVDALGGE ATDGALHAAA QDECSPLAPC EYPPPAQAAA ADEAERLRED LRKMSVMMAR LQDKVLATCG QTTEEFAEVQ RLLDKNQSLL HQPLALEQGF GSRIEPSEGA LVEWKSGVID REGSEGERGG GSGASETEQN GTANEKGAPG EADAPDMFGS SVTGVRSTDS ENRQGALGRS SPSEAGPRRA TMSADVDSAG GPCTPGKDGP VVAPQRGNES ICDIEERVLA ALGDEPRVRS SKGSVSEDDL TAGGVTGGES GTPSAKTGAT EGLHSAPRFG ESPLGDPFSP TTPAKTATKT GGEMAESLTP PGGETSPGAS EVLSTAGADE HEHSGVNGHL SETVRLGLDC PPALDPFDGD VGSGLEDNDD GFDSEPEETP LIEEERIAIV PMVMPLLFAE SEEEEEGGLR EPDGVAVEPV GGNLAVPEED VCEPEVVKKK AKKPAKGPGR KHVAGGSKGR KSKGGKVGKG GGVADKGSNT TRGEATPDEQ RAWKSYDRVF KRSFMRVMLP SHVGGGYWLG VPIPTANRFM KRGQCAVTFE SGGSKHSVVW LWRAPDRPPR NGEKSQKTKS DSRGFSGGWK GFARDHGLVT GDAVVFEKVG NRRFRLHLFR RSALGGSVEK AAKAANELAE RLDGEGGGKG LELSGGQKKR AAGGDETEVG DGRSVAKQAK PANVSGDGTT GGTTGTGVPG GVANKQRRGL DEGMDGVLTE KRRKVGVDER GGKRAEKNGI SLIGSSAPGV ELQTAAERRV RASGSSVGTA DAVKGAVIDE LTDKKKRPKV EDSTKPEKGP LAERPSTGER MDMEWNKEKR GLVGQPPAQG DPPVGTRQAK VTEIFPVVKR AKVGVSKDSA KREEGRSGTK VNGAEAQSSP AGNADVTAVT TAGRKPERTG GSGGAKRIKH TPKRGVSQVL GGKKRARDEG KEPPKKLQKG ARGGVVPEER NGGTTEEPEA EYEGGRLVHY VDGGHRYVEA SEADKGAAKV AMERCASAFP TFRVALSKSQ TDKGFRLGGM TDFFRQNGLE PFRMTALADD GGRLWHAKIN SQAAALSGGW RGFALDHRLE VGDALVFALV LPYVFAVRIF KASRGGKEDD CVAAGGASEG QPVRGEERIL SGDQKKRLAT IRGLPGGLPS RNQKPPRSAP TLPSPQNGNK RPTSKPAQGS SLARADVAPK DKGGALEKAF SGGTKTTKSA LSGGSNGAPP SAARKPAVNR TWPVIPRTAT AVKRAVGLGP SGPQTSEHAG PSRKSDEPCK VEASGKVVVF GSAEASGMAE TSGKAEVSGG SGPSDKRERS EKAGVSGILG PSRKAETLER TRASGNSVLS GEAETSGKAG VIGNGGATEP FGLSAELGAS AFPKAGTSDR GGSAKPEANA SALVSTVVQI KHSKVAVAFR VDRKKKGGLK SNAELMAERL NML // ID A0A0U9HN27_KLEFL Unreviewed; 1323 AA. AC A0A0U9HN27; DT 16-MAR-2016, integrated into UniProtKB/TrEMBL. DT 16-MAR-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:GAQ88008.1}; GN ORFNames=KFL_003930120 {ECO:0000313|EMBL:GAQ88008.1}; OS Klebsormidium flaccidum (Filamentous green alga) (Ulothrix flaccida). OC Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; OC Klebsormidiales; Klebsormidiaceae; Klebsormidium. OX NCBI_TaxID=3175 {ECO:0000313|EMBL:GAQ88008.1, ECO:0000313|Proteomes:UP000054558}; RN [1] {ECO:0000313|EMBL:GAQ88008.1, ECO:0000313|Proteomes:UP000054558} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=NIES-2285 {ECO:0000313|EMBL:GAQ88008.1, RC ECO:0000313|Proteomes:UP000054558}; RX PubMed=24865297; DOI=10.1038/ncomms4978; RA Hori K., Maruyama F., Fujisawa T., Togashi T., Yamamoto N., Seo M., RA Sato S., Yamada T., Mori H., Tajima N., Moriyama T., Ikeuchi M., RA Watanabe M., Wada H., Kobayashi K., Saito M., Masuda T., RA Sasaki-Sekimoto Y., Mashiguchi K., Awai K., Shimojima M., Masuda S., RA Iwai M., Nobusawa T., Narise T., Kondo S., Saito H., Sato R., RA Murakawa M., Ihara Y., Oshima-Yamada Y., Ohtaka K., Satoh M., RA Sonobe K., Ishii M., Ohtani R., Kanamori-Sato M., Honoki R., RA Miyazaki D., Mochizuki H., Umetsu J., Higashi K., Shibata D., RA Kamiya Y., Sato N., Nakamura Y., Tabata S., Ida S., Kurokawa K., RA Ohta H.; RT "Klebsormidium flaccidum genome reveals primary factors for plant RT terrestrial adaptation."; RL Nat. Commun. 5:3978-3978(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DF237342; GAQ88008.1; -; Genomic_DNA. DR Proteomes; UP000054558; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000054558}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000054558}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 486 591 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 825 883 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1149 1248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 486 591 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 825 883 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1149 1248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1323 AA; 142397 MW; 87868D440EB1C6F5 CRC64; MVCFLCSRAA KGAVRPAMHN NLDASAVPFI TTIRRMDALR SRPSLLVVKH EPLDAPLNTP QEPPLITPAK LVTVPPLCGP DTPVQSTPPP KLDQLAEQVR RTSEMLARLQ NMVQGVHEGR EEFTAAEATQ PLGKDSTLSS ESVAPPLGAC SDPRAGGAGF AVGSRKRLFG ERGGEVERGA NSNAEGQGVV EKVVCEKRVP GIVEAAEVLL GAPDGQSLVL DITPVPEMAG QEESRGGEGA AENVGFELLP GTEASASPTP EANQMQELGS LLAEGSLFGT ERVPVARTPS PYAQSGGPAE GPTPPPKADE VAPQNPRTLF NGVCVKTEWV DEPLGLETRG SAVNGHPGSS GNSGMNEQLA VNGHTGLYAG RSGVNGHSKV DDFPPSEPID DDSGSGLEDN DHGFDSEPEE AAAEEPSFGE PVEGPRFFAE SEEEKSESER ETGDIGGWLK AGWQEQESKT GSARDAITPA EKQEWLSYEG RFQTCFMRVM LPSFVTSGCW LGLPATVADQ FMKRGEYSVT FRSEGTAHTV NWLFRPPEKK AKRTAPSSKG KPGFSGGWKG FAEDHGLVPG DSVLFEKNHK YKFSLHLFRR CEYGGSVKRA AEAANRKGAE LDATAAGGSD GGQVGGVMEM EETRAGFVSD LKLNGGERRH SETDGHHTRQ KKLTEDFPVV KRQPRIIRKG TGKKRRGKGD GGNLRGEETK AVDGADVTAD GAGGSSGEPG GPKRVKRRRD GPGRVLTSAG RIMTSRAPGG AGSEHFVTNK DTVHYRYEEA SENGQRRAKK AMEECLTAYP NVKMVMSKSH VDKGFWLGGF TYLSCETHLQ TDQPVALVDS RGGVWHALLL HDASGLSGGW RGFSIDHRLE VGDALVFEMV FPYVFHVRIF KASRGGKEED CTGATGTRER RIRAAGRVQV GEKRKVNEAQ LKVLAALLNL PDGLPPERDY SQGIPLPELG PAPPRKVAKL SDLAPNAKAP NSSTKARADE SGPNLASTFG NGRPRIQPVR GGPVVKLEKV ERTPLEETQG VERDLVGGEE IRVGEGPGAK RRRGSETEVS LASPAPKQLK KTAKAKTSKA KTGAGTPPRS LGAAPGKTKK GELHFEKNPK NRDPESGRRR HLEEVTGRVY VEPSKEQIAA AAAAAQKAAK RIPAERLPFV LDMKTSHVDR VFWRGLPPAF LDALDLPRDC KVYLQNARGF VWEATLLIEQ QKGLSGGWRK FAVDHQLEFG DHVILDVREK VAVPNGSDAV GVTILVRIFR AKWDGREDDC RAFAFVPVEG KVVGKTTAYE GKRENGVKRE PGVKKVKKVK KELRVTSKGG VKKESGVKKE KRG // ID A0A151QN84_CAJCA Unreviewed; 308 AA. AC A0A151QN84; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Auxin response factor 4 {ECO:0000313|EMBL:KYP31736.1}; GN ORFNames=KK1_047793 {ECO:0000313|EMBL:KYP31736.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP31736.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP31736.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ485707; KYP31736.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34126 MW; A9E3AA1FA1C4A1BB CRC64; MEIDLNDAVF EADEKSASYD GECEKGAPCV CSLSSPTCSS SGSSSARVSS SYLELWHACA GPLTSLTKKG NMVVYFPQGH LEQAASFSPF SNYTRGVLEI LGCVQLAGLY LEQKDREELR ANEEGNETTP AKSTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLRPS QELVANDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVNQKN LVSGDAVLFL RGENGELRLG IRKAARPRNG LPESIVGSQS YYPNFLSSVA NAIFAKSMFH VFYSPRYYIN GSDFLFCKMF ELHTLIIGPL ISILSWKL // ID A0A151QT37_CAJCA Unreviewed; 65 AA. AC A0A151QT37; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Auxin response factor 4 {ECO:0000313|EMBL:KYP33479.1}; DE Flags: Fragment; GN ORFNames=KK1_045661 {ECO:0000313|EMBL:KYP33479.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP33479.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP33479.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484875; KYP33479.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 65 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 65 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP33479.1}. SQ SEQUENCE 65 AA; 7806 MW; 07F16ACB6F8BBAB4 CRC64; DYKQQRPSQE LVAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SIFVNQKNLV SGDAVLFLRC VYMFK // ID A0A151QTB7_CAJCA Unreviewed; 694 AA. AC A0A151QTB7; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_045624 {ECO:0000313|EMBL:KYP33515.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP33515.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP33515.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484864; KYP33515.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 76462 MW; D13ECBA1EEAEDCA6 CRC64; MAAFIDLNSA TEDDETPSSA SASASASSSV CLELWHACAG PMISLPKKGS LVVYFPQGHV EQFRHFSLPV SANIPSHVFC RVLHVNLNAE EGSDEVYCQV VLVPETEQVQ QKLREEGMNA AGEEEDAEAG MKSTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGQEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGED GELRLGIRRA AQLKSGITFS SLPCQQLNLG SLVEVVNALS TRCAFTIHYN PRVSSSEFII PIHKFLKSLD YSYSVGMRFR MRFETEDTAE RRFTGLIVGI TDVDPVRWPG SKWRCLMVRW DDLEAARYNR VSPWEIEPFG SASTANNLMS AGLKRTKIGL PSAKLEFPVP NAIGTSDFGE SLRFQKVLQG QEILGVNTTF DSINAQSHQL SDLRRCYPGS ICSRIAATGN SIGIPQVSSN VSCNGIGFGE SFRFQKVLQG QEILPSQPYG RRALSVDEAC GNGRFGLFDG YQALRSRNGW SSHMSNKSSH LHSPVPSGQV SSPSSVLKFQ QAVNPVSNSD YINKVSQVME AQEGTNCFGL PSFHNQLDSS HSHDSISVLR TSQELVPSCK SRCRVFGFSL TEAIANKEAI DPSAVTCSGP SFTRHVEDDF PPGHSLRSKA VGSYCTKVSS NLYPPRDMVF DKVF // ID A0A151QW16_CAJCA Unreviewed; 879 AA. AC A0A151QW16; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription repressor VAL1 {ECO:0000313|EMBL:KYP34494.1}; GN ORFNames=KK1_044537 {ECO:0000313|EMBL:KYP34494.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP34494.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP34494.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484582; KYP34494.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 313 414 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 575 625 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 313 414 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 879 AA; 97179 MW; E90563B773CF446D CRC64; MGSDICVVNG SCTHEWRKGW TLRSGGFAQL CCKCGSSQDN SVFCNKFHRQ QNGWRECNFC NKPIHCGCVV SRSLFEYLDF GGIGCVSCVN TTQLSMMRNT ENPNGSVSSI KSNASDRHSA HFDGRLFAGS VDEGKLMQFC KIVEASESSR WNHGQRDGII PREGDVGFSN VMKPSVQSLT FATLENNRST WEIKNMHESN SQPSLSMYLG NASGSNSVPP SVGEALEGRL DGKTSPPFHQ GQRSRPIFPK PLKSGLTISV ETDKGRISQS RVARPPADGR GKNQLLPRYW PRITDQELER LAGDLKSTVV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP HISQSEGVPL RMQDVKGNDW KFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI DPGGKLVMGF RKASNSTDTQ DASTSAPSNS TKGTSSSAGT ENLPSGSNHA DLLHSVTGNV EPHLDEHTEH LHLGTGTAGL LKTENNEMTN NSLVQQQISV SEKKRTRNIG PKSKRLLIDN VDAMELKLTW EEAQDLLRPP PSVKPSIVTI EDQIFEEYDE PPVFGKRTIF SACSSGGKEQ WAQCDDCSKW RKLPIDALLP PKWTCSENVW DSIRCSCSAA EELSSRELEN LLKTNKDFKK RRVVESSKSI QEHEPSGLDA LASAAVLGEN LVDTAESSAR ATTKHPRHRP GCSCIVCIQP PSGKGKHEQT CTCNVCTTVK RRFKTLMLRK KKRQSEHEAD AAQKEQVLQK DESDTNGASR DDASLLEKAE VGESSGGQID LNSHPNREDM MQVDVTGLDM STPLETTTTN HSVREFMNQN DLRSFDNEVQ GGQNSSLHTQ SNGEGQRFFS DGRCFSSIVW NQERDEVYSQ SNQSQNNLP // ID A0A151QXE6_CAJCA Unreviewed; 166 AA. AC A0A151QXE6; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP34984.1}; DE Flags: Fragment; GN ORFNames=KK1_044000 {ECO:0000313|EMBL:KYP34984.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP34984.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP34984.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484466; KYP34984.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP34984.1}. SQ SEQUENCE 166 AA; 19425 MW; 6B4FDDCAA261801D CRC64; QMFPERFVER YGEGLPNSLF LKTPNGAEWR LNLEKRNGKI WFEEGWKEFA EHHSLAHGHL LVFRCQRTSL FQVFILDMSA LEIDYPSERV EGEKASNNHG NRPPNDENLE YHRPGQKRKY NLAVDFLPLY HLRSSTSIKV ENTVILSKEA LHHTDTKCKG IRFCCP // ID A0A151QXF0_CAJCA Unreviewed; 531 AA. AC A0A151QXF0; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP34933.1}; GN ORFNames=KK1_044057 {ECO:0000313|EMBL:KYP34933.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP34933.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP34933.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484479; KYP34933.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 259 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 526 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 259 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 526 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 60851 MW; 655079C32E2DAD8C CRC64; MASPGNKLSL STAIHFFKII LTRSLTDGKL KLPNNFTRKY GDGMPNPVFF KPPDGTEWKI YLTEHDGEIW FQDGWKEFAA HYSLDHGHLL FFEYEETSHF DVHIFDNSAL EIDYLSHGTR DGKDNDVQIS GDSVKILDEQ CHDGKDIVVQ ISDDSVEISD EEQCSRRKTR VKSTASSSQP DKKMKNSITP DVERSPNGVN LHQHVKSRST SFQDVKFMQQ KLDEDEEGKG IFNNKCPKVE QLTPTALDKA RAFKSKHPSF LLVIKPSFID VDYLEIPAIF SEKYLKKTHA VVLLEILDEG SWPVICSAPR ITGGWQNFAS ENNLNVGDVC VFEMIQKIQS LAFKVSIFRG AEEPSRPISQ GCRVGSSSQR TLQLENHFKS EILKSTALRE ARKFTSENPF FMVTLKMQGN TTRCPVSLQV LFFFHEFFGL VLRVMNIYIH NLMQQVPKEF VTKYFVNMNQ KVMMIKFRKK LWPVTFVFNE SWGTGVLSAG WPLFSRENEL QRGHVCIFEI VNREDAKLDV HVFKGHTKVI L // ID A0A151QXG3_CAJCA Unreviewed; 144 AA. AC A0A151QXG3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At3g18960 family {ECO:0000313|EMBL:KYP34932.1}; GN ORFNames=KK1_044056 {ECO:0000313|EMBL:KYP34932.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP34932.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP34932.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484479; KYP34932.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 144 AA; 16652 MW; 53A94C22A9629E17 CRC64; MLIENSLQKI PNRFTREYGG NLSNAVFLKP PDGIKWGIYW TKHDADIWFQ KGWKEFATYY SLSHGHVLFK YQETCHLKVH IFDRSSLEVS YPFCGTQIEH DNLDYVSNDS VEVLDNSVNV LDEVAPSQKT ELKSTIPCPQ PLKN // ID A0A151QXI3_CAJCA Unreviewed; 525 AA. AC A0A151QXI3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP34986.1}; GN ORFNames=KK1_044002 {ECO:0000313|EMBL:KYP34986.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP34986.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP34986.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484466; KYP34986.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 375 478 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 375 478 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 525 AA; 60941 MW; 677CD83EF4EF8B78 CRC64; MATQPQVKPI HFFRIITLQN LHQGKLMFPE KFVEKYGEGL STNTLFLSTP NGAEWKLNLE KCDGKIWFQK GWKEFAEYHS LAHGHLLVFR CQRTSHFQLR IFDWSALEIE YPSKRIECET GSNNQGNTST NVGKFEYHRP GQKRKDNSSL EFVQRYQLRS RNCLKVEKTE ILPKEILHHT GTKCKEKSKA TANQVSALDR ASSFKPCNPF FLVVMHPYNV GSRCLLGLPC EFCRSYIDLH DQQRHINLQE LNGRVWPSRY LITKNNRNTK PRYRLKSGWK AFVKHNNLKV GDVCTFELIC RTKLTLLVHI FRETDSSNCS TPQGRIDFYF SIQNNSLYLK VGLIFNFAEK SKATTNQVTA LDRANSFKPC NPFFLAVIHP SYLGSSAGHL GLPCEFCRSY IDLHDQQRHI NLQELNGRVW PSRYLITKNN RNTKPRYRLK SGWKAFVKHN NLKVGDVCTF ELICRTKLTL LVHIFRETDS SNCSTPQGRA GIPRQSRDGF GYYLRVRVYL PSLQLAFTKY TSQRS // ID A0A151QXP1_CAJCA Unreviewed; 171 AA. AC A0A151QXP1; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At1g49475 family {ECO:0000313|EMBL:KYP34985.1}; GN ORFNames=KK1_044001 {ECO:0000313|EMBL:KYP34985.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP34985.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP34985.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484466; KYP34985.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 171 AA; 19894 MW; 801BC5B30A0A9733 CRC64; MFPERFVEKY GEGLPNSLFL KTPNGAEWKF NLEKRNGKIW FEKGWKEFAE YHSLAHGHLL VFRCQRTSLF QVHIFDLSAS EIDYPPRRKQ GKTVSNNHGN RPPIVKILEL ECHRSGQKRK DNSAVECIQP YQLRSRKSVK VDYNLILPKE ALHHTGRKGR GIRFCVSSSI S // ID A0A151R1N3_CAJCA Unreviewed; 996 AA. AC A0A151R1N3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_042365 {ECO:0000313|EMBL:KYP36508.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP36508.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP36508.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484206; KYP36508.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 869 962 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 996 AA; 111068 MW; A987391F64E305A2 CRC64; MKAPPNSYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALYNQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSI FPGLSLVQWM SMQQNNQFSA AQPGFIPPSM LSSNTLHVAS NQIPNQLTYS QLQQQQLLSG SIPPQQSFQS PSKNTLLMTS LPQDSQFQQQ IDQQASLLQR QQQQQQQQTQ LQPSPMQLLQ QSLSQRAPQQ SQLTQMSQQN SSEQQPQLQL LQKLQQQQQQ QQLLSTSSPL LQSQLLQQQN THQQNQQLPQ LPLSQCHQPQ QLGNNAFSME KLLNGNNYSS SALMQTQQLP VTQHHNTQKS LTNTRAPSTL TDGDAPSCST SPSTNNCQIS PPNLMKRNQP VPTTLGGPSV VEPTNHLIQE LHSKSEMQIK HELPSVRGPD QLKYKGTIAD QLEASSGTSY CIDPNNIPQN FSLPNFCMDG DVQSHPRNNL PFASNLDGLT PDTLLSRGYD SQKDFQNLLS NYGGAPRDIE TELSTAAISS QPFGVPDMPF KPGCSSDIAI NDTGVLNNGL WANQTQRMRT YTKVQKCGSV GRCIDVTRYK GYNELRHDLA RMFGIEGQLE DPQRTEWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS SAEVQQMSLD GDLGHVPVPN QACSGTDNGN AWRGQYDDNS AASFNR // ID A0A151R4N8_CAJCA Unreviewed; 667 AA. AC A0A151R4N8; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_041283 {ECO:0000313|EMBL:KYP37530.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP37530.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP37530.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484094; KYP37530.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 557 638 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 106 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 74944 MW; C726D8F013A7834D CRC64; MSFNRAAATA GEEDELYEQQ WKACAGPHVE VPRAGQRVFY FPQGHMEQVK VSTNQELNQR IPLFKLPSKI LCRVVNVHLL AEQETDEVYA QITLLPDSNV RIVHSFCKVL TASDTSTHGG FSVLRKHATE CLPALDMSQS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGNDGDL RVGVRRHAPV QSSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRFKTRFEG DDSPEAEKRF SGTIVGVEDI SPHWVNSKWR SLKIQWDEPA SFPRPDRVSP WEIEPIFASV PTSSSQPAVV KNKRPRQANE VPDLGDTPLP ASNFWDAGST QSDMTQLSVM AENKRSDNST HMWHHKQIDN SKSISNGISM NQTETSWLAS PHSSGPPHLY HDTTDDSKSI SAWPISKTHS ERLNNDHLLD HVDKEINKVE AATSCRLFGI ELIDHARNNS LCVENASVHA TNAFGVSSEY RTDVKHESDI SKASKEWKQE NLQVPPKETQ IKQVCSRSCT KVQMQGVAVG RAVDLTTLDG YDQLVDELEM MFDIKGQLQH RNKWEIVFTD DEGDMMLVGD DPWPEFCNMV RRIFICSSQD VHKLSSGSKL PLSSVEETVI SSDTTET // ID A0A151R6Y9_CAJCA Unreviewed; 408 AA. AC A0A151R6Y9; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein REM16 {ECO:0000313|EMBL:KYP38266.1}; GN ORFNames=KK1_040501 {ECO:0000313|EMBL:KYP38266.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP38266.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP38266.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ484019; KYP38266.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 45559 MW; 562FE33C343ABF6A CRC64; MGSQNCDGCR SWAEDIYWSH FQFLHFVQFL RTDYEQRLAL PKTFSDNIKK KLPENVSLKG PGGVVWNIGL TTRDDTLYFA HGWEQFVKDH LLKENDLLVF KYNGGSLNKK KETANSLDEG NSPSNVAVEC ASHDRTVNVN GMKEPMDVPF ETPIEKTFNA GVESAGAEQV MPGGVTIAFS PDAVPSETVN GKRVRKLVSA VRHVQTKRRG RPAKVSHVVR ERALDWVTVD AAEPASAVKS AVKSGTGTYE LYTSNRRPVT EAETKRAHDL AQAARTNDSL VVVMRPSHVY KRFFVSMPNR WIGDYVSPTS QDVLLRMGNG EWIARYSYHA IRHTGGLTGG WKHFALDNNL EEFDVCVFKP ASKENDTLVI DMTIFRVVEE IVPLTAVSPA GTGRRGRKPT MKTILTET // ID A0A151R7I1_CAJCA Unreviewed; 425 AA. AC A0A151R7I1; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os02g0598200 family {ECO:0000313|EMBL:KYP38580.1}; GN ORFNames=KK1_040170 {ECO:0000313|EMBL:KYP38580.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP38580.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP38580.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483988; KYP38580.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 425 AA; 47163 MW; 02A534B620510CFB CRC64; MGSKGHPVCA VCTNNCLLFH RPKQTPPSPT CFFKVIAKQE HLTTLYIPPA FSSIVSHLVN KKVILNDSSG KQWNVEVSEV NGSFVFEEGW NTFSLDHGLK VGYFLVFNYI KDLHFDVKIY DTSACEKLDF SKKRNQKKRS RGKSGSPVKD GKLVRQGPNA VVVSQLHVPK MQNQRSKVDS VVPQNSKESG QLMCISEHCE DPYYSTSLEF DQSHGVDGTT RFANGDSKVP DVDCGTHIYQ NDAIVCSKNP MFEVGMGAYL DISELEMSGG NTSLGEANKS TYDKTSTLEL EANKGIKAIM YNREAQECQI AESLESDQAA MSKEEHDLHI GGFHNTQQKS NGISNYLDAE LVNMITGEMK KVPVDMAPEL GSSMDELNVT GLPEETKGEL GHSSDMFNQH NESHFKTALT FSCVVPNDDV YLVRY // ID A0A151RBX0_CAJCA Unreviewed; 175 AA. AC A0A151RBX0; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP39895.1}; GN ORFNames=KK1_038791 {ECO:0000313|EMBL:KYP39895.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP39895.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP39895.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483873; KYP39895.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 20617 MW; FF1A7C66F72D8A52 CRC64; MIPNKYVEKY GEDLSTSFVF LKTPNGAEWK LNLEKCYGKI WFQKGWKKFA EYHSLAHGHL LIFRCERTSH FKVHIFDPSA LEIKYPSQTI ERETVSNSRG NESTNVENLE YHRPGPKRKD NSSLEFLQQY QLTSYNCVKV ENNEILPEEA LHRTDTKCKG IRFCVFKHFI KSFTS // ID A0A151RDE0_CAJCA Unreviewed; 347 AA. AC A0A151RDE0; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=AP2/ERF and B3 domain-containing transcription factor RAV1 {ECO:0000313|EMBL:KYP40405.1}; GN ORFNames=KK1_038254 {ECO:0000313|EMBL:KYP40405.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP40405.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP40405.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483838; KYP40405.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 139 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 201 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 139 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 201 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 37706 MW; 0B2C35DA61797F84 CRC64; MDAISCMDES TTTESLSMSL SPTMSSKKAF VSASPTTSSK KTYVSPPPLS GTLCRVGSGA SAVVDSDSGG GGTEVESRKL PSSKYKGVVP QLNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDVAAVRFR GKDAVTNFKG LAAAEDDDGE AEFLNSHSKS EIVDMLRKHT YNDELEQSKR SRGVSVNGVN VSATAAKGVL LNFEDVGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDTVCFHRS TGPDKQLYID WKARNVVVNV NVNVNVNKEV GLFGPVAEPV QMVRLFGVNI LKLPGSECIA NSNNTSGAIP GCCGGKRREM ELFSLECSKK PKIIGAL // ID A0A151RF19_CAJCA Unreviewed; 170 AA. AC A0A151RF19; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At1g49475 family {ECO:0000313|EMBL:KYP41228.1}; DE Flags: Fragment; GN ORFNames=KK1_037392 {ECO:0000313|EMBL:KYP41228.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP41228.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP41228.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483786; KYP41228.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP41228.1}. SQ SEQUENCE 170 AA; 20117 MW; 0C4AD65C6EB17BFC CRC64; SAQQRIPAKF VRKYGKHLSN TVFLKLPNGA EWRVNLEKRD DSVWFQKGWK EFVAYHSLAH GNLLVFRYDG TPHFHVLICD MSATEIEYPV SKPNHKRAKI SSQEIQPRKT RRTNRKDEKS NSNLQDVVAF DQKVKNHKGK FLESYFLIYL FVRFLAIELE GYKEFCFVYV // ID A0A151RFA9_CAJCA Unreviewed; 215 AA. AC A0A151RFA9; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP41310.1}; GN ORFNames=KK1_037330 {ECO:0000313|EMBL:KYP41310.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP41310.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP41310.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483782; KYP41310.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 49 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 123 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 49 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 123 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 215 AA; 24784 MW; EBC4369A9B52A1F2 CRC64; MRLKKCDKHV FFCTQWRHFV NYYSLSYGSH LVFRYEGNSK FRVLIFDITS AEICYPCKTR GTNSNRKRSK VDDEDSNVNL KSESKTKKEE SDFSDRKQVQ SGYNENHSSN SSEISKDSAN TFKPKNPFVT STIKLDRLYV GSKFASKYLK ANVGMMLQNC NGEQWDVSCV CHSGSRAKII FRGWSKFVRD NDLSEGDACM LELIKRDPIV LKLTT // ID A0A151RGB2_CAJCA Unreviewed; 578 AA. AC A0A151RGB2; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_037147 {ECO:0000313|EMBL:KYP41465.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP41465.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP41465.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483771; KYP41465.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 450 532 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 65001 MW; B46098B0C2197CD1 CRC64; MFCKTLTALD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVNQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV FYSPRASHAD FVVPYQKYVK SIKNPVTIGT RFKMKFEMDE SPERRCTSGL VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE IDPSASLPPL SIQSSRRLKK LRPGLQAASP SHLITVGGSG FMDSEESVRS SKVLQGQENT SFMSLYYGCQ EICPFRSLTE KVDLNFGAWG KPNVNCTNYN LHQATKPNFH SLGPEVIQTA YYPYGDIHKA GQGSNMLYSK PTNVPFNIPS TQPGMMRNEV GRSDVTIPNE QKLQDNIPGA ANMRIPNDDN LKGKVNACKL FGFPLSGETT TQTLQNSAKR SCTKVHKQGS LVGRAIDLSR LSSYNDLLIE LERLFGMEGL LRDPNKGWRI LYTDSENDIM VVGDDPWHEF CDVVSKIHIH TQEEVEKMTI GMMNDDTQSC LEQAPMVMEA SKSSSVGQPD SSPTVIRM // ID A0A151RGH5_CAJCA Unreviewed; 126 AA. AC A0A151RGH5; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At1g49475 family {ECO:0000313|EMBL:KYP41676.1}; GN ORFNames=KK1_036959 {ECO:0000313|EMBL:KYP41676.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP41676.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP41676.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483758; KYP41676.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 126 AA; 14550 MW; 5188F6532FF31E66 CRC64; MIPRSFVKRY GEELLNPVML KLPNGAKWEV HWTKCDHDDI YFEKGWENFA KHYSLSNGHF LVFRYEGGSQ FQVLIFDGSA LEIDYPTSNS STHHAEGTNT SHEDVEEIDD DSPLPRKQKA NPGNFF // ID A0A151RGW3_CAJCA Unreviewed; 332 AA. AC A0A151RGW3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP41675.1}; GN ORFNames=KK1_036958 {ECO:0000313|EMBL:KYP41675.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP41675.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP41675.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483758; KYP41675.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 271 288 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 309 326 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 65 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 65 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 39110 MW; 1A73E6C1FF5C679C CRC64; MLNPVILSLP NGAKKKVYWL RHDGDVWFCN GWKEFATYSR LEASHFVVFR YEGNSSFNVI IFGKSAVEVE YPLSSDSNEE VEETHGTDKN VEERSSHKGK RKKSPSPLSR TSKKIQISPK IEVEEEDQLN HWKKKAGLDN SKYIHNGSFK RSIRNFHEKV KTMFHSENEH FTCAIQKTYI ERDLLILPME FSKHYLHKDG ATLFIEDGRT WDVELKVNYC GQLTFSIGWK KFSQDNELKV GDVCGFELHK YKGFSFKVTV FRFEEDSSTP LFIGIIYLLT IISNYELLHR NNFSYNIFTK DHITFICQIL NEFLLFPLYM FIYIFPHNFH LF // ID A0A151RI60_CAJCA Unreviewed; 399 AA. AC A0A151RI60; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os01g0234100 family {ECO:0000313|EMBL:KYP42163.1}; DE Flags: Fragment; GN ORFNames=KK1_036448 {ECO:0000313|EMBL:KYP42163.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP42163.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP42163.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483730; KYP42163.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 342 369 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP42163.1}. SQ SEQUENCE 399 AA; 45253 MW; 1A541953D2DCC02C CRC64; KAATEGTSSR GEVMSSAVLQ AEEIQSNLQS EFPSFVKSLV RSHVASCFWM GLPVSFCKKH LPDKDTTIIL EDESGKEYNT KYIACKTGLS AGWRQFSAVH KLQEGDVVVF QLIQPTKFKV YIIRANNTRE LDGAFLSLDN CIKQKMGGKT CKGNTDIDVV TCNASKRKHG KSIPLDVRKK KKSSMSRMRP KARPPVEQSE NDSDEALSEV MEGYKMLEFK DVKGFENFSI IVDGMPIDVE LSTEVRNKYY NLCCSQHAFL HDNLIKGMNY KLIAGIISET VNIADAIKVS VICTPRFEFT NWDKTLLAFE HLGMNVEFLR VRLRRLVSIA YETNDALEAR KYLACRNEYT RADDEIKNME AKLEELKGAC YEFGAYLESL KCKAESYHVK FKKEVATPW // ID A0A151RLE1_CAJCA Unreviewed; 392 AA. AC A0A151RLE1; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Putative B3 domain-containing protein At5g58280 family {ECO:0000313|EMBL:KYP43369.1}; GN ORFNames=KK1_035186 {ECO:0000313|EMBL:KYP43369.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP43369.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP43369.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483669; KYP43369.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 392 AA; 44303 MW; 5F05195A5722D5A7 CRC64; MLVNMMFYSV SNFDDQSIYL VSPFAFKDLG ISRISKNLTE ITSSAKKTLH HLPKLKPKKT NGEVEPRRSS RVRNPVPSYR EDVSIDLPPL RKRSRSNSST WGSYVARPLD EIKEATEEER LRALQAAEAL QINLNSSNPS FIKSMVRSHV YSCFWLGLPS KFCEEHLPRT VYGMVLEDEN GSEYEAVYIG NRSGISGGWR AFALDHKLDD GDALVFELIE GSRFKIYIVR AFPDSVEEKG MDILEKEGNM HETKVSKAAC NIESESKTKK PKQAAVYKTT EPEFSQEHLP DGVNPTKKSK SSQKEMQKTS KGKVQIKTDK SKAAVKLSNK TRKRRQGITN EIGDLGKLEK NGFVQDAADC KLEKLELIQE ATKCVSQKAR KKPAPKYFRK KA // ID A0A151RM90_CAJCA Unreviewed; 140 AA. AC A0A151RM90; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os04g0386900 family {ECO:0000313|EMBL:KYP43656.1}; DE Flags: Fragment; GN ORFNames=KK1_034884 {ECO:0000313|EMBL:KYP43656.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP43656.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP43656.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483658; KYP43656.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 58 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 58 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP43656.1}. SQ SEQUENCE 140 AA; 15978 MW; C04D100C41805A06 CRC64; PTTNLEWDEV KPLSGKPHYE HLLSRSNLSP RYNMGPSSNI LSELPSHEVP TILIYGDKSW DLVYNGQSNR QQKTFGTTGW KKFAVDTCLK VGDACIFELI QSSDKKIIFQ VQILRSDIPS KFLENEKLRG QIREMPIVLS // ID A0A151RMQ9_CAJCA Unreviewed; 554 AA. AC A0A151RMQ9; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os01g0723500 family {ECO:0000313|EMBL:KYP43793.1}; GN ORFNames=KK1_034773 {ECO:0000313|EMBL:KYP43793.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP43793.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP43793.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483653; KYP43793.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 447 543 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 447 543 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 554 AA; 62096 MW; A703858F8D626C54 CRC64; MGCECGGKLN VRRPHFYEVF SSAFSSHRLK IPNGFVCRME GRTYGSVSLT GPSGNTWVVQ LIKQDNDLFF HHGWSAFVAD HRLECGDLLV FRYEGQLHFT VQVFDNDACE KEAAFHSECS QNSCDFDNIR GQKRDTQENA SLDIVGESAS KKMRGSTNEN QEIELGIVVK ELPRYDVVRP INASTMYRSG KEDDHYVLSG VSLSNVSAHD EKKVAQSFTS SFPYFVRIMK SFNVSGSYTL NIPYQFSMAH LPNCKIKVIL HNLKGEHWTV NSVPTTRVHT SHTLCGGWMA FVRGNNIKVG DICIFELVHE CELRVHIAGV GKDGLDCQVG KVDISRFSAG HAVTSRYMAT NPKVTPKCIR KVDLSEKKWS KIGQETVLSV DMKKSVRASN TSKKMGLSKA AHKKLAVQRR HRVEDELSSQ AKAGLRMLFA LDEQRVAQAF TSPFPSFVKI MKKFNVSGSY TLKIPYQFSA AHLPTYKTEV MLRNSRGECW TVNSVPDAKG RTVHTFCGGW MAFVRDNDIN FGDTCIFELV AQCEMQVYIS GVGKEGLDHQ VAKT // ID A0A151RRB3_CAJCA Unreviewed; 377 AA. AC A0A151RRB3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os01g0234100 family {ECO:0000313|EMBL:KYP45083.1}; DE Flags: Fragment; GN ORFNames=KK1_033365 {ECO:0000313|EMBL:KYP45083.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP45083.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP45083.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483602; KYP45083.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 320 354 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP45083.1}. SQ SEQUENCE 377 AA; 42313 MW; CF2C8676156C8F27 CRC64; RKRDGIVIDG PCNTTQAHST TYQRAKEVQA TLSPLFPSLI KSMLPSHVTG GFWLGLPTKF CQLHMPKVDT IFSLEDESGQ LYETKYLTQK AGLSGGWRGF SMAHNLLEMD VLIFHLVQPS KFKVYIIRSQ GSDEVDGALG LLKLDECRKQ TDEVNGVLDT TEGNDHKNSE MVFGANVSQL DEVENTSEDL VSGIKFSESV VSFKQVNGVE NFRIVVNGLV IDSELSQYDR GKYYELCLSQ GSFLHEQLFE GLNSKLAAGI ISETINIADA IKGSNLTTSP DGFAIWDKTL KAFGTMGMNV GFLLNRLDQL MKLALKLMRY KEVILERDRA EEELKALEAK LVQVKQTINR LDQETDIQRM HPDRLKTMFQ QLAHAPW // ID A0A151RRL8_CAJCA Unreviewed; 792 AA. AC A0A151RRL8; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_033301 {ECO:0000313|EMBL:KYP45168.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP45168.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP45168.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483600; KYP45168.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 747 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 87859 MW; 047824E9D16DE976 CRC64; MRLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWQNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPP GLPSFHGMKD DDFGMNSPLL WLRDTDRGLQ SLNFQGIGVN PWMQPRFDPS MLNMQTDLYQ AAAAAAVQDM RSLDPSKQHS ASLLQFQQPP NFPNRNSALM QAHAVSTMSQ FVSAPQPQSP PVQAISSLCQ QQNFSDTNGN PVTTVVSPLH SILGSFPQDE TSHLLNISRT SSWIPVQNSS AWPSKRVAVD PLLSSGAPQC VLPQVDQLGQ PQSTMSQNAI SLPPFPGRDG NNDSSTLPYQ SSNYLNTTTG TDSSLNHGMT HNIGESGFLQ SPENTGQGNP LNKTFVKVYK SGSFGRSLDI TKFSSYHELR RELARMFGLE GELEDPVRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI KILSPQEVQQ MGNSGLELLN SVPSNGICDD YVSRQDPRNL STGITTVGSL DY // ID A0A151RY77_CAJCA Unreviewed; 491 AA. AC A0A151RY77; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_030848 {ECO:0000313|EMBL:KYP47512.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP47512.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP47512.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483525; KYP47512.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 491 AA; 54081 MW; 7C0B1679E0FC0A18 CRC64; MEHASPSHSP SLEPLLRSLP FVPCHVSSID LLADPYSDEV FAKLTLTPFP FHHNNANDHQ NDHQSDVVSF SKILTPSDAN NGGGFSVPRY CADSIFPPLD FRADPPYQYL SITDVHGVAW RFRHIYRGTP RRHLFTTGWS KFVNHKKLVA GDSVVFMRDS EGRVSVGIRR AARFAMKSEA VEVEAAEGAG FSRSTTGRVS PKAVAAAAEA AARNEPFEVV YYPRAGFADF VVSAEVVDEA MKYAWVGGTR VKIGIETEDS SRMTWFQGMV ASACATDNGP WRMLQVIWDE PEVLQNAKRV SPWQVELASP TLALHTVFPP TKRFRADQGS GLLGEREGDP FPMSGLFPNS TMGHLNKKMF CYDTFPAGMQ GARHDLFSAT NFSNFLNDNS YLYLGSSSLV NNTVQRLETV STELNIGSSQ SDDLSPHSQS SLHSSCTEFT GTHNSNTKVG SGSILLFGKI IHPVEYDLHD ADCVEEGDRS KETEGSDNLL E // ID A0A151S0U2_CAJCA Unreviewed; 801 AA. AC A0A151S0U2; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription repressor VAL2 {ECO:0000313|EMBL:KYP48378.1}; GN ORFNames=KK1_029909 {ECO:0000313|EMBL:KYP48378.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP48378.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP48378.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483501; KYP48378.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 251 352 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 516 566 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 251 352 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 801 AA; 89171 MW; CCED96D68A41729F CRC64; MESRSCMNVA CATLTTTRWR KGWTLRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDIGGVSCIN CARNSGLQPI ASNEKPSGSG TSKVNNVGAQ QYTSLANQLN VRGMQVGHYA ENDGLRCWFK PHNVETDGPS TEMKPEILPS TNLSMTLAAP LGNSNHFQSA VVDEREQSKT SPLLLGPRPP AEGRGRNQLL PRYWPRITDQ ELQQISGEYP AFSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK ATNSTAVQET LPSNMPNGSH SSETSYSGVY ENLPILSGYS GLLQSQKGCS ESHLNALSKK WNSAGGDMNW HSIDMPESRK REGLPLPPVL VPEKKRTRNI GSKSKRLVID SQDALELKLT WEEAQDLLRP PPTVKPSIVM IEDHVFEEYE EPPVFGKRSI FVVRSTGINE QWVQCDSCSK WRKLPIDVLI PPKWTCVENL WDQSRCSCAA PNELNPRELD NLLRLNKEFK KQRLAASQRP ALEHASSGLD ALANAAILGD DANDSGRTPV VTTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQLSW RTKDESEVDS TSRQLTPVDE DMQAAPNSMS MTSLLEEANL PLETYLKQNG LTSLISEQQT NSASNVQQAH TTNESEGRRN EDCCTASVIH EQESSPEENS GQDKDQNNSL S // ID A0A151S0V3_CAJCA Unreviewed; 797 AA. AC A0A151S0V3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_029988 {ECO:0000313|EMBL:KYP48374.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP48374.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP48374.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483502; KYP48374.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 676 760 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 797 AA; 88438 MW; 0DFD7D4DEB3CBFC0 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLICQL HNVTMHVDVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSFHDGRD EATNGLMWLR GGPGDQALNS LSFQGSGLLP WMQQRMDPTL LGNDHNQQYQ AMFSSGLQNL GTGDLMRQQM MNFQQPFNYL QQSGNPNPPL QLQQPQAIQQ SVSSNNILQP QAQRQHSGLP SPSYSKPDFL DSTMKFSASV SPGQNMLGSL CPEGSGNLLN LSRSGQSMLT EQLPQQSWAP KFTPLQVNAF SNSMPHVQYS GKDTAMVPPH CNSDTQNPII FGVNIDSSGL LLPTTVPRYA TASADTDASA MPLGETGFQG ALYPCVQDSS ELLQSAGQVD PQNQTRTFVK VYKSGSVGRS LDISRFSSYH ELREELAQMF GIEGKLEDPL RSGWQLVFVD RENDVLLLGD DPWESFVNNV WYIKILSPED IQKMGEQAEE SGQRLNSTGA DSHEIVSGLP SIGSLEY // ID A0A151S1A8_CAJCA Unreviewed; 239 AA. AC A0A151S1A8; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At2g36080 family {ECO:0000313|EMBL:KYP48592.1}; GN ORFNames=KK1_029744 {ECO:0000313|EMBL:KYP48592.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP48592.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP48592.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483496; KYP48592.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 27422 MW; F4C64A0EC80D5549 CRC64; MSINQYSCWN QQQQQQQQAA TWVADSNSPR FNLNKEEVVA AEQEEEKEAM FEKALTPSDV GKLNRLVIPK QHAEKHFPLE SSSKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKDKRLNAGD VVLFHRHRIH PHRFFISSTP RQTPPSYPHS HSLGGGSQAQ AQAQGQKETT AASSGRVLRL FGVNMECQPQ PQPHHDSQNS TPQCSYSFSP YSSSNPHPRH HMLHQQQPY // ID A0A151S2E6_CAJCA Unreviewed; 854 AA. AC A0A151S2E6; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_029307 {ECO:0000313|EMBL:KYP49005.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP49005.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP49005.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483486; KYP49005.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 731 813 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 94431 MW; 1A0F94B9A87B88DF CRC64; MASSEVSIKA NSVNGKGENN SGGYNNGNDV RSGGGDGQNA SSSSTARDAE AALYRELWHA CAGPLVTVPR EGERVFYFPQ GHIEQVEAST NQVAEQHMPV YDLPPKILCR VINVMLKAEP DTDEVFAQVT LLPEPNQDEN AVEKEAPPAP PPRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SKQPPTQELV AKDLHANEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIL TGTMFTVYYK PRTSPAEFIV PYDQYMESLK NNYTIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPKRWPK SKWRSLKVRW DETSNIPRPE RVSQWKIEPA LAPPALNPLP MPRPKRPRSN VVPSSPDSSV LTREASSKVS IDPLPASGFQ RVLQGQELSA LRGGNFAESN DSDTVEKSGV WPPAADDEKI DVVSTSRRYG SESWMSMGRH ESTYPDLLSG FGAHGDQLPS FADQNGSVAN LGRKHLLDRE GKHNVLSQWP VVPSSLSLSI LDGNVKGSAQ GVDTTYQVRG NLRYGSAFGD YPVLHGHKVE HSHGSFLMPP PPTQYESPRS RELLPKPIAG KPCEVSKPKD SNCKLFGFSL LSSPMAPEPS VSQRNVASEP VGHMQTTSHQ QRTIENDPKS EHSRGSKPAD DLLIDDHEKL LQSSQPNPKD VQPKSHGGSA RSCTKVHKKG IALGRSVDLT KFSDYDELIA ELDQLFEFGG ELTSPQKDWL IVYTDNEGDM MLVGDDPWQE FVAMVRKIYI YPKEEIQKMS PGTLSSKNEE NQSANEGADA QDVKCQLNHS ASDT // ID A0A151S3Z0_CAJCA Unreviewed; 887 AA. AC A0A151S3Z0; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_028765 {ECO:0000313|EMBL:KYP49484.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP49484.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP49484.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483475; KYP49484.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 781 865 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 887 AA; 98376 MW; A701C34D81479935 CRC64; MMASVEEKIK TGGVGVGVGG GMVVGGQSLV AEMKLLKEMQ EHSGFRKTLN SELWHACAGP LVSLPQVGSL VFYFPQGHSE QVAASTRRTA TSQIPNYPNL PSQLLCQVQN VTLHADKETD EIYAQMTLQP LNSEKEVFPI SDFGLKHSKH PSEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTIQP PTQELVVRDL HDNTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL FIRDEKSQLR VGVRRVNRQQ TTLPSSVLSA DSMHIGVLAA AAHAAANRSP FTIFYNPRAC PSEFVIPLAK YRKSVFGTQV SVGMRFGMMF ETEESGKRRY MGTIVGISDV DPLRWPGSKW RNIQVEWDEP GCGDKQNRVS VWEIETPESL FIFPSLTSSL KRPLQSGLLE NEWGMLRRPF IRVPENGTME LSNSMPNLYS EHLMKMLFKP QLMNNNGAFL SVMQQESAAS RAPLQDMKAT LAAESLKAQL ASTENMPLKN LHSQSIPDQA LNMQSVLKKC EVLPDHIVDY PSMEGCILEK VAANPVNQQG LPSQFTFHNQ NQSPLLPQSS PWPMQPQLES SLPHPQMIDM AQADSALANG MIPQLDIDEW MAYASSQPFV GQNKSTGPLS DLQDHASLQP QAMNPPLPST NQEVWDHYVK NLKLLSQPDQ ITSITQPGMY GLNGIPSSNS TTMVDPSTSS TILDEFCTMK DREFQTPQDC MVGNLSSSQD VQSQITSASL AESHAFSLRD NSGGTSSSHV DFDESSFLQN NSWQQVPAPI RTYTKVQKAG SVGRSIDVTT FKNYEELIRA IECMFGLDGL LNDTKGSGWK LVYVDYENDV LLVGDDPWEE FVGCVRCIRI LSPSEVQQMS EEGMKILNSG ALQGMNV // ID A0A151S4J0_CAJCA Unreviewed; 243 AA. AC A0A151S4J0; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At1g49475 family {ECO:0000313|EMBL:KYP49709.1}; GN ORFNames=KK1_028577 {ECO:0000313|EMBL:KYP49709.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP49709.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP49709.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483471; KYP49709.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 74 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 74 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 243 AA; 28095 MW; 3C4A5C5BDAFFAB08 CRC64; MFVSKYGKYL SSTMFLKLPN GAEWRVNLEK INGSVWFQKG WDEFVKHHSL AHGHLLIFRY DGASHFHVLI CDMSGTEIEY PINKANHKRA RIKSEEIQHN KIRRTNGYNK KGKRKIEGSS ISKYGVLEAV NTSFTVIMKA SHLIRQCMLM HVMQYLPKGP LKSFIKSGEQ YVMLLVGDRS WRVKLSHYHN KSSSYFTAQW PAFARDNDLK EGDACLFQLL NSSDDLVMKV SISRYSSLKR PIT // ID A0A151S5K5_CAJCA Unreviewed; 617 AA. AC A0A151S5K5; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_028176 {ECO:0000313|EMBL:KYP50021.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP50021.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP50021.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483463; KYP50021.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 506 586 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 100 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 617 AA; 67440 MW; 323F49435D84E624 CRC64; MKETDKTLDP QLWHACAGAM VQMPPVNSKV FYFPQGHAEH AHSNVDFTSS PLRVPPLILC RVAAVTFLAD PDTDEASEKP ASFAKTLTQS DANNGGGHLL TTGWSSFVNQ KKLVAGDSIV FLRADNGDLC VGIRRAKRGG VGGPEVGSGW SGGGGGGLGP YGAFCAFLRE ESKGARNGSG RPKVSAESVR EAIMLAAGNQ AFEVVYYPRA STPEFCIRTS AVRAALRIQW CSGMRFKMPF ETEDSSRISW FMGTIASVQL LDPIRWPNSP WRLLQVTWDE PDLLHNVKRV SPWLVELVSN VPIIHLAPFS PPRKKLRFPQ HPEFPLDVQF PIPTFSGNPL GSSASSPLCC LSDNAPAGIQ GARHAQIGIS LSDLHLNLNH KQLQLGFLPT NFRQLDLHTG ISNGNITNHG KSRESLSCLL TMGNSNKSLE KSDHVKRHQF LLFGQPILTE QQIARKSSSD VLSQNCTATD DENKEKGFLS DSQSSVSPGK SSSTAEFSWQ LGSDTSSHCK VFMESEDVGR TLDLSCLGSY EELYMRLANM FGIQRSEMLS HVLYRDATGA LKQTGEEPFS EFMKTAKRLT ILTDSSSKDR RVWITGTRNA EHGLDASNKT GPLSIFA // ID A0A151SA86_CAJCA Unreviewed; 459 AA. AC A0A151SA86; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP51698.1}; GN ORFNames=KK1_026466 {ECO:0000313|EMBL:KYP51698.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP51698.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP51698.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483434; KYP51698.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 86 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 189 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 357 454 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 86 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 189 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 357 454 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 459 AA; 52429 MW; C236526B3D53C77B CRC64; MLTIGSLQKL PKAFTRKYGD GISNPVFLKS PDGTEWEIHW NKHDGEICLQ KGWKEFATFY SLDHGHLLLF EYKGTSHFDV HIFDNSALEI DYPSHNGKDN ITVEYVEIFD DQKTRVKSTL SSPQPCKKMK TSITTNVERS TNGVNLHQRV QTRSTSSQKA KLDEDEIKMV QLTSTSLNKA TAVRSEHPSF KLVMKPPYIN GYYLDIPPQF SKQYLKKTHA VVLLRVLDGR SWPVIYSAPR INGGWQKFAL ENNLNVGDVC VFELIQEIHS IAFTVSIFPG AEKPSCPISQ VKAKTEFNEN AKIDHSKCRI VRPSTNWTGG SSSQRSSLLQ SHTKPKILTT RARKKASEFT SENPFFTVTL TNQKRLKTPR CPYVPSEFVR KYFVKMKQNV MMIQFKKKVW PLKFAFHSCA VSGMLAGGWS SFATENELQH GDVCIFELVN REDTILDLHV FRNHCKVMH // ID A0A151SAP2_CAJCA Unreviewed; 673 AA. AC A0A151SAP2; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_026232 {ECO:0000313|EMBL:KYP51876.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP51876.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP51876.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483431; KYP51876.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 73641 MW; F3C135D2DE534895 CRC64; MGLIDLNTTE DDETPLSSSA SSSSSSSHHS GISTSASTVV PPPSVCLELL HACAGPLISL PKKGTVVVYL PQGHFDHAQD FPVTAYNIPP HVFCRVLDVK LHAEEGSDEV YCQVLLVPES EQVEQSLREG EIDADGEDGD TEAMVKSTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYSQQRPS QELVAKDLHG LEWRFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL RGDDGVLRLG IRRAAQLKSA CSFAVPSGQQ LNPATLMDVV SALSTRCAFS VCYNPRVSSS EFIIPVQKFL KSLDCSYSVG MRFRMRFESE DAAERRFTGL IAGISDVDPV RWPGSKWKCL LVRWDDIEAA RHNRLSPWEI EPSSSASSSS NLMAAGLKRT RIGMTSAKLE FPAPNGIGTS DFGESLRFRK VLQGQEIMGV NTPFDGINAQ SPRIYELGRC YPGSNCSGIP AMGNIRMPPP ASDFSGNGIG FSESFRFQKV LQGQEILPSQ PYGRALSIEE ARANGRFGLY DGYQMLNSRN GWSAAQMHDN APHLHASVTP SQVSSPSSVL MFQQAVNPVS NCDYSNKRNK EMEGRVHYKG GLYTSEVKVS ALRNSQELVS SCKSSCRLFG FSLTEDTHGT NKAAESSTIT CPLNPGPSFT RLVEDEFHSG GWK // ID A0A151SBC1_CAJCA Unreviewed; 614 AA. AC A0A151SBC1; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_026006 {ECO:0000313|EMBL:KYP52096.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP52096.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP52096.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483428; KYP52096.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 490 583 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 614 AA; 68552 MW; DAEA294F9875ED4B CRC64; MEQLVASMYE GLEQQMPSFN LPSKILCKVV NVHLRAEPET DEVYAQITLL PEADQSEVTS PDDPLPESPR VKVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ PPWQELVATD LHGNEWHFRH IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRQGENGE LRVGVRRLMR QQSNVPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSV NKYLEAQSHK LSVGMRFKMR FEGDEIPERR FSGTIVGVGD NKSTVWPDSD WRSLKVQWDE PSSILRPDRV SSWELEPLLS TTPANPQPTQ RNKRARPLIL PSSMADSSMQ GVWKSPIMES TSFSYCDPQL GRGLYPSPKF NSTATNFLGF SGNSSVGHPS NKSIYWSNRM ENSMESISAI ALKEAGEKRQ GTGNGCRLFG IQIHENSNAE GSLQPVTLDA ESDQNSEPSN ANRSDIPSVS CDAEKSSLQS PQESQSKQIR SCTKVHMQGM AVGRAVDLTR FDGYEDLLRK LEEMFDIKAE LCGSQKKWQV VYTDNEDDMM MVGDDPWNEF CTVVRKIFIY TAEEVKKLSP KIGLPINEKD KPSKLDSEAI VNPEDQSSIV GPSC // ID A0A151SDV8_CAJCA Unreviewed; 220 AA. AC A0A151SDV8; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=AP2/ERF and B3 domain-containing transcription repressor TEM1 {ECO:0000313|EMBL:KYP53015.1}; GN ORFNames=KK1_025012 {ECO:0000313|EMBL:KYP53015.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP53015.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP53015.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483417; KYP53015.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 220 AA; 24521 MW; 1D2F4B81D9B6F330 CRC64; MLRKHTYHDE LHQSRRGTSA AWRRRRDGEM ASSGACEAKA REQLFEKTVT PSDVGKLNRL VIPKQHAEKH FPLGGSGDGV LACTAAAKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDAVRFFK STGPDRQLYI DCKARTGDTN ASALFIPVGP VVEPVQMVRL FGVNLLTLPV SEGVNGYGKR KEMELFALEC SKKLKVIGAL // ID A0A151SE28_CAJCA Unreviewed; 794 AA. AC A0A151SE28; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_025199 {ECO:0000313|EMBL:KYP52991.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP52991.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP52991.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483418; KYP52991.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 661 745 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 794 AA; 87798 MW; 1CD3B0A7FC34F2DF CRC64; MKLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NVTMHADTET DEVYAQMTLQ PLSPEEQKEA YLPADLGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELVAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHAGLKD DDFGMNSSLM WLRDADRGLQ SLNFQGIGVN PWMQPRLDPS MVNYQTDMYQ AMAAAALQDM WTSDPSKQHP PSLIQLQQQQ QQVMDHQQIS SAVSTIAQFI SAPQSQSPPM QAISSLGHQQ NFSDSNGNPV TTAIVSPLHS ILGSFPQDET SHLLNLPRTT SWVPVQPSTA WPPAKRVAVD PLLSSGASQC VMPQVEQLGQ PQSTLSQNAI SLPPFPGRDN SDSPTIPFQS TNYLNTTGTD SSLNPGMTQN IGESGFLQTP ENGGQGNPPN KTFVKVYKSG SFGRSLDITK FTNYHELRGE LARMFGLEGE LEDPVRSGWQ LVFVDQENDV LLLGDGPWPE FVNSVWCIKI LSPQEVQQMG NNGLELLNSV PIQRLSNGVC DDYAGRDDPR NLSTGITAVG SLNY // ID A0A151SE65_CAJCA Unreviewed; 531 AA. AC A0A151SE65; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_025090 {ECO:0000313|EMBL:KYP53086.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP53086.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP53086.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ483417; KYP53086.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 57858 MW; 4F2D32E22E396A7D CRC64; MERGSERCLD SQLWHACAGA MVQMPPLNTK VFYFPQGHAE HARGKVDFGQ TRIPPFIPCR LSAMKYMADP DTDEVGVEGQ EKPPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPRRHLLT TGWSNFVNQK RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGAEFSSGWN PLFGGGSGFL SGAKGGGDEM VGRVAAESVL EAVTCAVNGR PFEVVYYPRA SSPEFCVKAS VVKAAMQIQW CSGMRFKMPF ETEDSSRISW FMGTISSVQV ADPIRWPDSP WRLLQVVWDE PDLLQNVKCV NPWLVELVSN MPTFNLSAYS PPRKKQRFIQ DPYFQVINQL PMPSFSGNLL NYTNSLCNIE NNSSAGIQGA RHAQFGLSPS DFPFNKLQAD MLLGGFSRLD HAAQPIRPPC GTYKSNPATK ANVDISCLLT VGTPGQNYKE SNETKAPHIL LFGKLIHTEQ KSSNTSSAST AGNSVSEGNS LKTSNASDGI GSALHQSSPI ENNSDGGSPW YKDQHKSDLE TETVNTLCMA L // ID A0A151SI77_CAJCA Unreviewed; 581 AA. AC A0A151SI77; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 7. DE SubName: Full=B3 domain-containing transcription factor ABI3 {ECO:0000313|EMBL:KYP54554.1}; GN ORFNames=KK1_000745 {ECO:0000313|EMBL:KYP54554.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP54554.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP54554.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003613; KYP54554.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 433 535 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 433 535 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 581 AA; 64057 MW; 5F5872F3D595CD0B CRC64; MECEVELQGG DLHAGVVTEP NSLGFSTMED AHTLAVAERE MWLNSDQDEF LGVNEASMFY ADFPPLPDFP CMSSSSSSSS APPLPVKTMT CSTTTTTTTT TSSSSSSSSW AMLKSDFEED AEKNHCNPYM HDHLDATALS STASMEVFLE WLKSNKDSVS ANDLRNVKLK KATIESAARR LGGGKEAMKQ LLKLILEWVQ TSHLQNKRRK ENNGSINTAL QAQFQDPGGQ NNQTTQTASF APESNSCFSN NTPWLSPQAF GTDQAPIMQF PQHMVGQSFG ENGIFPNGGF GGYGNNNQYP YQFFHGPGDR LMRLGPSATK EARKKRMARQ RRFMTHHRHH NSNNHQNNHG SDPRLGSDNC TTVMAAPHAN PAANWMYWQA MTGGTAGPLA PVAPAESPAA DRSAMQTQNG HQGRAASDRR QGWKPEKNLR FLLQKVLKQS DVGSLGRIVL PKKEAETHLP ELEARDGISI TMEDIGTSRV WNMRYRYWPN NKSRMYLLEN TGDFVRANGL QEGDFIVIYS DVKCGKYMIR GVKVRQQGLK PETKKAGKSQ KNQHGTNAAT TAVTAANNGT PSSPKQKAEK K // ID A0A151SIK3_CAJCA Unreviewed; 684 AA. AC A0A151SIK3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=KK1_000825 {ECO:0000313|EMBL:KYP54630.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP54630.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP54630.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003613; KYP54630.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 564 645 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP54630.1}. SQ SEQUENCE 684 AA; 76021 MW; 142C3198999871B1 CRC64; GLKDDDLYRE LWKLCAGPLV DVPRTGDRVF YFPQGHMEQL QASTDQELNQ EIPHFNLPAK IFCRVVNIQL LAEQDTDEVY ACIALLPESD QTEPTNPDPN VSETPKQKFH SFCKILTASD TSTHGGFSVL RKHATECLPP LDMTQATPTQ ELAAKDLHGF EWKFKHIYRG QPRRHLLTTG WSTFVASKRL VAGDAFVFLR GEHGKLRVGV RRLARQQSPM PSSVISSQSM HLGVLATASH AVMTRTMFLV YYKPRTSQFI VGLNKYLEAV NNKFSVGMRF KMRFEGDDSP ERRFSGTIVG VGDVSAGWSN SQWRSLKIQW DEPATIPRPD RVSCWEIEPF VASTTLNVTQ PAVKGKRSRP NEVSSSAASG FWYHGSSQSH ELGQLGAAAV VEVQSKENQV TCSLRQKDVI NSNPINANSR VRVEGVWPCS PHVNVSSKNF SDPNINNCVS ARSSISGYPN VPSRSSDGPT CEGGEDGKRS ENSLDCWLFG VNLSNNCSNV VISPSERGGS LSIVGSGPKE SIPAAACETE RVQTPNYSLS NKQIISEASP NEWQNKQATV PSMRTRTKVQ MQGVAVGRAF DLTTLSGYDD LIDELEKLFD IKGELRSQNK WAVTFTDDEN DMMLVGDDPW PEFCNMVKRI LICSREDLKK MKCCKLPASS SEIEETLLSP DSQNRDETQQ SHMA // ID A0A151SNI2_CAJCA Unreviewed; 359 AA. AC A0A151SNI2; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP56396.1}; GN ORFNames=KK1_002634 {ECO:0000313|EMBL:KYP56396.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP56396.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP56396.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003613; KYP56396.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 218 313 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 218 313 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 40402 MW; 130BD4DE101971D6 CRC64; MYEGNSSFIV HMFNLSTSEV NYQSAMRNHN EGPCFANYHH IFDEMEDVDS LDLSDSSSPF LTPGALQNKV FAGSVDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSAF SSKGANSQGN QSTTRDIGVQ FNAVEFKRST DELKLRYSTN EEAANKTAKK KRKSEPNGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINAAKA FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTLENNLGEG DVCVFELLRV REVVLQVTIF RVTEDAGLLN SPPMQLQQQQ QQSSQNMSHT KLLNPHLQHR VSPTKLVRN // ID A0A151SSJ9_CAJCA Unreviewed; 987 AA. AC A0A151SSJ9; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_004093 {ECO:0000313|EMBL:KYP57814.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP57814.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP57814.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003613; KYP57814.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 859 952 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 608 632 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 987 AA; 109682 MW; A134B7DC123AABCF CRC64; MKAPSNGYLP NSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSQLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQSR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVAKD LHDNTWAFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDAV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMFTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKNSQW RNIQVGWDES TAGERPGRVS IWEIEPVVTP FYICPPPFFR PKFPRQPGMQ DDESDVENAF KRAMPWLGDD FGMKDASSSI FPGLSLVQWM SMQPNNQLSA AQSGCFQSML PSNTLQGNLT TDDPSKLLSF QAPVLSAPNL QLNKPNLPSQ IKQLQHSPVQ HATIMNNGVV ASNQFVQQPM AYGQLQQQQL LSGGIPPQQG IQSGSKNTFP LTSLPQDTQF QQQIDQQASL LQRQQQQQQT QLQQSPLQLL QQNLPQRAPQ QPPATQMLQQ NPSEQQLHLQ LLQKLQQQQQ QQKQQQQQIL STSTPLLQSQ LLQQNQQLLQ PLPPISQHQP QQLSNNAFST EKLLNSNNFS SSGLMQSQQL PMNQPQIMQK SLTITRAPST LTDGDAPSCS TSPSTNNCQV SPPNLLKRNQ QLPAALGGSL MVEPTGDVQS HPRNSLPFDS NLDGLTPDTM LLRGYDSQKD LQNLLSNYGG APRDIETELS TADLSSQSFG VPNMPFKPGC SSDVGINDTA VLNNNNNNGL RTNQTPRMRT YTKVQKRGSV GRCIDVTRYK GYDELRHDLA RMFGIEGQLE DPQRTDWKLV YVDHENDILL VGDDPWDEFV ICVQSIKILS SAEVQQMSLD GDLGGNVPIP NQACSGTDSG NAWRGQYEDT SAASFNR // ID A0A151T2S3_CAJCA Unreviewed; 990 AA. AC A0A151T2S3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_015850 {ECO:0000313|EMBL:KYP61363.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP61363.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP61363.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003610; KYP61363.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 878 962 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 45 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 990 AA; 109986 MW; A8D3370C495FE983 CRC64; MRVADPETDQ VYAQMTLQPV PSVDKDALLR SDLALKSTKP QPDFFCKQLT ASDTSTHGGF SVPRRAAEKI FPPLDYSMQP PAQELVARDL HDTVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP ANISSSVLSS DSMHIGVLAA AAHAAANNSP FTVFYNPRSS PSEFVIPLAK YYKSVYSHQP SLGMRFRMMF ETEDSGTRRY MGTITGISDL DPVRWKNSQW RSLQVGWDES TAGEKRSRVS IWEIEPVTAP FFICPPPFFR SKRPRQPGMP DDELSDFDNI FKRTIPWIGD DMCMKDSQGL PGLSLAQWMN MQHNPAMASS LQPNYRLLQT AQQLDHLQKL PSTSSALGTV MPPQQQLGDI TQQPRQKSAN QTIPQSQVQA QLLHPQNIVQ SNNILQQPQP SIQNHQLHRS LSQNPSQQQQ QTIIGQNQQQ NLIQSPVPDH VQQLQMSDNQ IQLQLLQKLQ QQKQTLLAQQ TALQQPAQFS QIQDQQRQIL DKTHNLSRAL APGQVLEIPT ILQNSLPEAN SISNQMTKAN CQNNIQYSQQ PKLQQQQPGL LSEMSGHVAL LPTPTTNQLS TAGSSILTGA AGAGQSVITD DVPSCSTSPS TNNCATALQP LINSRFQRST IVGDDMAQST ATLLSSSALE TISSNANLLK DLQPKSEVKP SLNISKIQNQ GHFGPQTYLN VSAAHTDCLD TSSSTTSVCL SQSDAHMHQN NNPLSYNPQT MLFRDNSQDG EVQADPRSNI PYANNIDSQM GMPLNPDSLL TKSTLGLGKD LSNNFSSEDM LGNYENNRDT RQELSSSMVS QTFGVPDMTF NSIDSTIDHS NFLNRGAWAP PPAPPPPPLP PAQFQRMRTY TKVYKRGAVG RSIDIARYSG YEELKQDLAR RFGIEGQLED RQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFANGGLPNQ ACSSSDGGNT // ID A0A151T756_CAJCA Unreviewed; 630 AA. AC A0A151T756; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_017449 {ECO:0000313|EMBL:KYP62889.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP62889.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP62889.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003610; KYP62889.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 518 599 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 77 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 630 AA; 70056 MW; 37A47BB0CE912DC3 CRC64; MEQLEASTNQ ELNQRIPLLK LPTKILCRVI NVHLLAEQET DEVYAQITLV PESNQDEPTS ADPCTAEPPR AAPVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPALDLSQ PTPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDT FVFLRGANGE LRVGVRRLAR QASSMPSSVI SSQSMHLGVL ATASHAVSTQ TLFVVYYKPR TSQFIIGVNK YLQAMDNKFS VGMRFRMRFE GDDSAETDKR FSGTIVGVED ISPYWVNSKW RSLKVQWDEP AAVPRPDRVS PWEIEPFVAS ASTPSVQPAI VKTKRPRPPS EIPEVDTTSA ASVFWDAGLP QADNMAQINV LAESKRNENT GTWHHLQTDM NSKSNSNNTM LRNQTEGSWL SSPHSSCPPH LFQDTTDDSK SVSAWPVSKP PSSRLNHDHA PDQVDKESKV ETATSYRLFG IELIDHSRNS PALEKASAHA VNVPKVTTEG SASTLSRADA GQNLIRIFSN MNLQLMFKTC QKVQMQGVAV GRAVDLTMLD GYKQLINALE EMFDIKGQLQ HRNKWEIVFT DDEGDMMLVG DDPWPEFCNM VRRIFICSSQ DVKKMSSGSK LPISSSVEDG TVISSDTTET // ID A0A151T7I8_CAJCA Unreviewed; 945 AA. AC A0A151T7I8; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os07g0563300 family {ECO:0000313|EMBL:KYP63006.1}; GN ORFNames=KK1_017567 {ECO:0000313|EMBL:KYP63006.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP63006.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP63006.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003610; KYP63006.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 409 510 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 659 709 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 409 510 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 945 AA; 105239 MW; D2F3633747D28C92 CRC64; MNSNNNNYCY FLKPRFFSHL KNTHCYSLLS LSKTLFLFSL YFHSFSLIAD QAVALVDSFR FGFAMASASS SSSKLCFNSD CKELKPERPK KGWRLRSGEL AELCDRCGSA FEEGRFCEIF HSSASGWRSC ETCRKRIHCG CIVSSHAFVL LDPGGIECFA CARKNFILVI TIFCYLSQPS NLPWPQSFSL QSRISDRLRD LSAKGWTQLA GSGPVPWKQA PSLFNSASSS DMLPDVPSLV ELSNSFDKMY CNERLPSSTL EKKNEDLSGM SVNWSVKLGS REMMLMNGMR NEDKSSSCLN MCPQPPLKEE SSPQPFGLPV PNSCQNERNG QLGVTGSQPQ QTPPPPGKQF NGNMHLAPDS SCEAQIRNGR PRADARGRNQ LLPRYWPRCT DLELQQISID SNSVITPLFQ KTLSASDAGR IGRLVLPKKC AETYFPPISQ PEGLPLKILD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRLEPEG RLVMGFRKAS SAVPSDQIFN TSHIYLLSGE NLNLCAYFSV CRTMKPIRLE MDFLHMVELA DPNSWSKVDK SGYIAKEALG SKSLISRKRK SSILGSKSKR LKIENEDLIE LKITWQEAQG LLRPPPSHLP SIVVIEGFEF EEYEAPVLGK PTIFTSDNVG DKIQWAQCED CLKWRKLPAS ELLPSKWTCS DNSWDPERSS CSVAQELTAE QLENLLPPCN SAVSKKMKAA KQDPDNAEAL EGLDTLANLA ILGEGEALPA SAQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFRTL MLRREKKQSE KEAETTRKKQ QQQHPQPLPS PEILLDEDSL PCSNTGQIDL NIQPEREEEL SPGSDSGGMM KLLHDATERY LKQQTVNLGT GDSSGSQSQL VVDGMREEKL SNGVAHGSSS HNADKEHVQS LSMNV // ID A0A151T857_CAJCA Unreviewed; 613 AA. AC A0A151T857; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_017807 {ECO:0000313|EMBL:KYP63240.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP63240.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP63240.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003610; KYP63240.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 489 582 PB1. {ECO:0000259|PROSITE:PS51745}. SQ SEQUENCE 613 AA; 68465 MW; 3090390BBB092382 CRC64; MEQLEASMNQ GLEQQMPSFN LPSKILCKVV NVHLRAEPET DEVYAQITLL PEADQNEVMS PDDPLPEPAR CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMTQQ PPWQELVATD LHGNEWHFRH IFRGQPRRHL LTTGWSVFVS SKKLVAGENG ELRVGVRRLM RQQNNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM RFEGDEVPER RFSGTIVGVG DNKSSVWADS EWRSLKVQWD EPSSILRPDR VSSWELEPLV STPPTNSQPS QRNKRSRPPI LSSTMPDSSL QGVWKSPVES APFSYRDHQH GRDVYSSPKF NSTATGFLGF GGNCSASNKS IYWSSRMENS TESFSPVALQ ESGEKRQGTG NGCRLFGIQL LENSNEESLP MVTLSGRVGD DGPLPSLDAE SDQHSEPSNV NRSDIPSVSC DAEKSCLRSP QESQSRQIRS CTKVHMQGMA VGRAVDLTRF DGYEDLLRKL EEMFDIKGEL CGSTKKWQVV YTDNEDDMMM VGDDPWLEFC SIVRKIFIYT AEEVKKLSPK IGIPINEEVK PSKMDSEAVV NPEDQSSIVG PDC // ID A0A151T946_CAJCA Unreviewed; 373 AA. AC A0A151T946; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor FUS3 {ECO:0000313|EMBL:KYP63568.1}; GN ORFNames=KK1_018147 {ECO:0000313|EMBL:KYP63568.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP63568.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP63568.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003609; KYP63568.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 185 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 185 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 41767 MW; 026D537D4281BD58 CRC64; MFPLSSPSIR HSLLGHSLTT TTTSTNPYAQ TKPFPLTLTE KEVVQSQKTK STVCECLMMM DERQREKVLH KTEACGFVAG VGSDLGHVTV PGDNTNNVSH SHGSGRIHHF GLVPAFGTVH RKKRMPRQRR SSNPSLLMHQ PNHPRFLPPP PPSSSASASA SSHVPLSATL LPAREIDHRR LRFLFQKELK NSDVSSLRRM ILPKKAAEAF LPALDSKEGI VISMNDIDGL HVWSFKYRFW PNNNSRMYVL ENTGDFVNTH GLRFGDSIMV YQDSQNNNYV IQAKKASDQD EFIEETSDTI NDIFLNDYEV NKPGCFDVTY PAVNDTGMSF IYETTFSNDS PLDFLGGSMT NFSRIGPVET FGSVENLSLD DFY // ID A0A151TBU3_CAJCA Unreviewed; 214 AA. AC A0A151TBU3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At5g42700 family {ECO:0000313|EMBL:KYP64522.1}; GN ORFNames=KK1_019122 {ECO:0000313|EMBL:KYP64522.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP64522.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP64522.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003609; KYP64522.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 24381 MW; 074AB2790403ECD1 CRC64; MVAAYEESRR KRLEENRKRM EALNLPLLSQ ALHKSSPSKS SPLKQHAKSR TIEKEVVVVR RSSRVANLPS PVYKEVVIDR VTIPRRTYSK HRDYANRVYA SDEAREEALE KADKLMSDLE SQYPTFIKTM LQSHISGGFW LGLPVHFCKS NLPKGDEVMT LIDEDGNEYP TIYLARKTGL SGGWKGFAVA HDLADGDALI FQLIKRTAFK VIKY // ID A0A151TG38_CAJCA Unreviewed; 359 AA. AC A0A151TG38; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein REM21 {ECO:0000313|EMBL:KYP66012.1}; GN ORFNames=KK1_012290 {ECO:0000313|EMBL:KYP66012.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP66012.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP66012.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003608; KYP66012.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 107 137 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 359 AA; 41986 MW; 1869A85DA42B2E16 CRC64; MTTGAKKHPD FFKVFLPEQS SERLLIPNSF VRLINMQGRI PEDVILRNCG GRVWHVKTGR IGEKLYFDDG WKVFQEENCL GKADFLVFEY DGSNEFKVLI LEISTQCEKT VVKMEEEENV EEEAEAQEVD EMEVREEEEH EQVEEGKIED EEDSEDEDYD SDDEDDSAYD NGSDEDSGME EEIEEEHSAG SIGRSYLRAC KRETESSSTP RVEGPLEVYE FDPEMYIQPE NPYFEAKLYK SRRNELHIPG NVIKDFSLTF HEKVTLFCCG CCQRRDFQEI ELREYHLSLA QHAPIRKRYL EVSGEVCRWL DGRVCVKGWL SFCRRNKMTK YDTCLCEIIS GEDQIVRMFR VHVLCSRRG // ID A0A151TG40_CAJCA Unreviewed; 416 AA. AC A0A151TG40; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os11g0197600 family {ECO:0000313|EMBL:KYP66010.1}; GN ORFNames=KK1_012288 {ECO:0000313|EMBL:KYP66010.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP66010.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP66010.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003608; KYP66010.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 318 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 318 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 416 AA; 48023 MW; D7AC44D501A1649A CRC64; MRDPSFHPNP KCFALVQRNN PECWHMDFHH QHTPLFFIII NNTKLLKVPK EFLKHLNEDL SSDAILIGTS GGQWQVTILK KGNEIYMQNG WPQFLTDNSV VLDEFLLFRY LGDKCFHVQI FGKNGCERPC LTETRQEEAA TPNLAFSNKC SLSNGCKTKK TRQKQAATPS LVRTNKSKQR KTCASSFRPH ESKSCQEDMP FNNKDTLSNG CFREIRQEQT ATPCLERAEK CKQQKTFAGS LHLHESKSYE EGKYDVSNIH INVVTISKDD KFNLTKYLVF SNKGLLSKNF SKPRNSIKFE SSEACKLAET FTSGKPHWKH LLRKSNVENP CILHIATEFA RMYIPEAVTE IILWNPEGKF WEVTVNSQSK RYTQLTTGWG RFVRDNKLMR GDTCIFELEE GNEVSVHIFR TRCAKY // ID A0A151TG43_CAJCA Unreviewed; 423 AA. AC A0A151TG43; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP66011.1}; GN ORFNames=KK1_012289 {ECO:0000313|EMBL:KYP66011.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP66011.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP66011.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003608; KYP66011.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 290 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 290 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 423 AA; 48164 MW; 14520575FC835C88 CRC64; MPHPSFHKLL LPSTLQPNQL RLPDNFMRKY GGEISPIVTL SVPDGSVWRV GLKKADNKYW FIDGWQEFIQ RYAIGVGYLL VFGFEGKSSF NVRIFNLATS EINYQSATRS SNEGPYFANR VKIFEEMEDE DSIEILDSSP SHLASQNKAL AGSVDKMTPG KSYTPALQNL FNGSKLNSIN WGEGGNAHSL RSASDNRMTR DIGVQFNAVE FKRSTEELKL RASIEERIKK TARKKRKSEG QDPSAEHEEE VEMRFRFYES ASARKRTATA EERERAINMA KAFEPPNPFC RVVLRPSYLY RGCIMYLPSC FAEKHLNGVS GFIKLQISTG RQWPVRCLYR GGRAKLSQGW FEFSLENNLG EGDVCVFELL RMKEVVLQVT VFRITEDVGL LSPPLQQNQN MNTPKLLNNP LQQHLTSTKL IRN // ID A0A151TGC4_CAJCA Unreviewed; 338 AA. AC A0A151TGC4; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Transcription factor bHLH63 {ECO:0000313|EMBL:KYP66088.1}; GN ORFNames=KK1_012372 {ECO:0000313|EMBL:KYP66088.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP66088.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP66088.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003608; KYP66088.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd00083; HLH; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 4.10.280.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR011598; bHLH_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR Pfam; PF00010; HLH; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00353; HLH; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF47459; SSF47459; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50888; BHLH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 145 BHLH (basic helix-loop-helix). FT {ECO:0000259|PROSITE:PS50888}. FT DOMAIN 251 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 251 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38180 MW; 4B7596442D9CE017 CRC64; MLHCLNTSGN IDTTLLERQK CHQPHFSATE LNAVFSSKKR KAETNCKSKV DKRLKVSARE QENNNNGTTS ADTSKGSEVQ NQKPQYIHVR ARRGHATDSH SLAERVRREK ISERMKYLQD LVPGCNKIAG KAGMLDEIIN YVQSLQRQVE FLSMKLAAVN PRLDFNIDEL FAKEVFPSCA QSFPNIEMAS DVTNNPAYLQ FNSSQQLVSC CGGLINNMGI SPANLGIRRN ISTNTTTTIP VPLLPETSFD SSCFANVLVI LIISVLQIDL NYVDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVNQK NLVSGDAVLF LRCVYMFK // ID A0A151TKI8_CAJCA Unreviewed; 1033 AA. AC A0A151TKI8; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=KK1_023890 {ECO:0000313|EMBL:KYP67547.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP67547.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP67547.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003607; KYP67547.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 921 1005 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP67547.1}. SQ SEQUENCE 1033 AA; 115170 MW; 747BFA8385E4ACD8 CRC64; ERSINSELWH ACAGPLLSLP SPGTHVVYFP QGHSEQVAAS LKKNVDAQVP NYTNLPSKIP CLLHNVKLHA DQDTDEVYAQ MTLQPVTSFD TDALLRSDIS LRSSKSQPEF FCKQLTASDT STHGGFSVPR RAAEKIFPPL DYSVQPPAQD LVARDLHDNT WRFRHIFRGQ PKRHLLTTGW SLFISRKRLL AGDSVLFVRD EKQQLLLGIR RANRQPSNLS SSVLSSDSMH IGVLAAAAHA VANHSPFTVF YNPRASPSEF VIPLAKYYKA VYSHHISSGM RFRMMFETED SGTRRHMGTI IGVSDLDSVR WKNSLWRNLQ VGWDESIAEE RQSRVSVWEI EPVTAPYFIC PPPLYRSKRP RLPDDEPDFN NGLKRTVPWL GDDTCMKDLQ ALPGLNLIQW TNIQQNPALA SSLQPNYNIL QTSWQLDHIQ KLPSTPSALG MVTQPPQQLG DITQQQRNLT NQTLSQNQVH TQLLNPQSLV QTDNILQQQQ SSIQNHQLLT SVSQNPPQQH QQSTMGQNQR KNSFQPSMPD HFNQQLQMSD NQVRLQLLQK LQRQQQTLLA QQSALQQPAQ IQSQDQWRQI LDVAHNSSVR TPGQVPENLP TLQNSLPEAN TITHRITMPS SQKNIQFSHL SQQPALLFET SGHVGLPPTV KSNPLSASGG SVLTGAGQSI ITDDVPSCST SPSTNNCAST LPPVISSQIH KSTTIGDDMA QSSVTILSPS ALETMSSANK LKDVQPKYEV KPSLNISKSL NQGNVAPETY LNGVVQTDYL DSTSSTTSLF HFQSDTRIHQ NNNQFSYNPQ SMYFRDNSQN AEVQADDRSN VPYFNNLNGQ MELPPNLGTV GLGNDLSNNF SSGGLLGDYE NNRVVQPELS SSMVSQTFDV PDMSFNSIDS TINGSSFLNK DAWALPPPPP PPPQHQFQRR RTYTKVYKRG AVGRSIDIAR YSGYEELKQD LALMFGIEGR LEEQQRIGWK LVYVDHENDV LLVGDDPWKE FVDCVRCIKI LSPQEVQQMS MDGDFGHGGL PYPAGSSSDG GNT // ID A0A151TN67_CAJCA Unreviewed; 740 AA. AC A0A151TN67; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_022115 {ECO:0000313|EMBL:KYP68489.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP68489.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP68489.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003606; KYP68489.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 696 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 740 AA; 81713 MW; 77BF9196DB6CAE1F CRC64; MEIDLNHEVT EVENNALCDG ECEKGGGAGG WSSSTCSSSS SSSAHVSSSY LELWHACAGP LTSLPRKGNV VVYFPQGHLE QVASFSPFTP MEIPTYDLHP QIFCRVVNVQ LLANKENDEV YTQVTLLPQA ELEGMHSEGK ELEELGAEEE GDERSPTKST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK NLVSGDAVLF LRGENGELRL GIRRAVRPRN ELPESIIGSQ NCYPNVLSSV ANAISTKSKF HVFYSPRASH ADFVVPYQKY VKSINNPVSI GTRFKIRLEM DESQERRCSS GTLIGTSDLD PYRWPKSKWR CLMVRWDEDI ETNHQDRVSP WEIDPSAPLP PLSIQSSPRL KKLRTGLQVA SPSHLITARG SGLVGFEESV RSPKVLQGQE NAGFVSLYYG CQEICQLKSL TGNVDLNLGA WGMPNLSCST FNLHQATKPN FQSALFPYGD IHQPGQTSLF CSKPTGFQRE NAPFNKPPTQ GGIIVNEVGR SDLPNEHKLQ DNISAAAASL GAPNMGVPSD NNAQGKVNGC KLFGFHLSGE AATQNLPNSA KRSCTKVHKQ GSLVGRAIDL SRLSGYNDLL SELERLFGME GLLKDPDKGW RILYTDSEND IMVVGDDPWH EFCDVVSKIH IYTQEEVEKM TIGMISDDTH SCLEEAPVIM EASKSSSVGQ PDYSPTAVRV // ID A0A151TNB1_CAJCA Unreviewed; 683 AA. AC A0A151TNB1; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_022168 {ECO:0000313|EMBL:KYP68538.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP68538.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP68538.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003606; KYP68538.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 571 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 103 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 683 AA; 75471 MW; 7CDBDE1D937FC6B4 CRC64; MKEAEKLLDP QLWHACAGGI IQMPQLNSKV FYFPQGHAEH AHTTLDLKVP PLIPCTVAAV KFMADPETDE VFAKLSLLPN SDLARDSGAA DSAPEAAEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTAEPPP PVQTVVAKDV HGEMWKFRHI YRGTPRRHLL TTGWSSFVNQ KKLVAGDSVV FLRAENGELC VGIRRAKKGI GGSEACSSVW SSASGSGNCG IGPYGPFSFF LREENKHLRN GGGRVRVSPE AVVEASTLAA SNKPFEVVYY PRASTPEFCI KASSVRAAMR IQWSSGMRFK MAFETEDSSR ISWFMGTIAS VQVLDPIRWP NSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPVINFT PFSPPRKKLR FPQHPDFPLD VQFPIPAFSG NHLGPNSPFS DNAPASIQGA RHAQFGISLT DFHLNNKLQL GLLPTNIQQL ELYSGISNGN IANHDKSKEN LSCLLTMGKS SKSLEKSDDV VKKHQFLLFG QPILTEQQIS SEVLSHRKNS LDDDKDKEKC VLDDSQSALS QQFSPGKASA AEFSWHLGLD TGHCKVFLES EDVGRTLDLS HLGSYEELYR RLANMFGIER SEILNHVLYR DATGAVKQTG EEPFSDFMKT AKRLTILTDS GNKNIKRVWI TGTRNGEHGL DASNKTGPLS IYA // ID A0A151TQ28_CAJCA Unreviewed; 231 AA. AC A0A151TQ28; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Putative B3 domain-containing protein Os03g0621600 family {ECO:0000313|EMBL:KYP69175.1}; DE Flags: Fragment; GN ORFNames=KK1_008362 {ECO:0000313|EMBL:KYP69175.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP69175.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP69175.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP69175.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP69175.1}. SQ SEQUENCE 231 AA; 26904 MW; 957125C8AE2A4EDC CRC64; KIPNKFTRKY GGALPNPVFI KPPDGTEWEV YWVTKNGEVW LEKGWKQFVE HYSLDQGHLI FFEYQGTSHI DVLIHDQSAL EIRYPSSDEK DNLDHTDEEQ MRDEKPSQRA SSLNRPIQTR AREVASSFIS INPFFTVFLK PAHVLESYLA VPDMKGIFEK KEKYVHVKLQ LGERSWNVKL LLSQRFSFGR LSAGWSLFAS ENELQPGDVC VFELISRDDP VFKVHVFKRQ D // ID A0A151TQ45_CAJCA Unreviewed; 274 AA. AC A0A151TQ45; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP69178.1}; DE Flags: Fragment; GN ORFNames=KK1_008365 {ECO:0000313|EMBL:KYP69178.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP69178.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP69178.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP69178.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 244 272 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 160 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 160 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP69178.1}. SQ SEQUENCE 274 AA; 31735 MW; D724D290C2A7BF26 CRC64; IPRSFVNECW EGIISNPVLL LLPNGAKWNL RCKKHDADVW LTNKWKKFAE FYSLDQDHLL VFKYVGKSQF HVIILDQTGL EIRYPLMEVT SDGEENGSNS LRQSKRAKPP LPFSRSTKKL KTNPRKEPKS FPRQDVETRG TQSRRTHVHQ FDNGMPKIRV ILRTSDNRTW DAKLCVNRCN GQLYLSTGWK DFVKDNNLEI GDVCIFEQMK SGGTISYTVL LFHGEEESSS PIIIPGDMQF AILWIHYFIF IIIIIIIIII IIIIIIIIFM LISL // ID A0A151TQ63_CAJCA Unreviewed; 260 AA. AC A0A151TQ63; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein REM9 {ECO:0000313|EMBL:KYP69179.1}; GN ORFNames=KK1_008366 {ECO:0000313|EMBL:KYP69179.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP69179.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP69179.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP69179.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 149 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 149 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 260 AA; 30446 MW; F7EECF7D26CE254B CRC64; MSYTMLTKSL WQRIPRNFVN KCWEGISNPI LLLLPNGAKW EINWKTLDAD VWLVDNWKKF VLFYSLDQNH LLVFRYVGMS RFQVVILNQS GLEIGYPLME ETLHGRKRIM DADSRCLKSK AIQREKLLEK SESSVALRSA MAFHSENPFF IREMHPSYIN NYFLAMPRNF ITAEELEEYD SIILWNSEGK SWHVKFSLNR SSGQIFLKGR WKNFVEDNGL KVGNVCVFEQ MQKLGISFRV FIFRNPEESN PGPSMLSGKL // ID A0A151TQ65_CAJCA Unreviewed; 141 AA. AC A0A151TQ65; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At1g49475 family {ECO:0000313|EMBL:KYP69177.1}; DE Flags: Fragment; GN ORFNames=KK1_008364 {ECO:0000313|EMBL:KYP69177.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP69177.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP69177.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP69177.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP69177.1}. SQ SEQUENCE 141 AA; 16555 MW; 9738D00E1B00AD1F CRC64; YSQKIPNKFT QKCGRGLSNP VFIKPPDGTE WKVHWTNQNG EVWFKKGWKE FVENYSLDHG HLVLFKYEGT SHMDVLILDQ TELEIHYPLC DTPQENDNLN QSDDDESSVV VLDEWPHQNA VTQSRPRKKM RCMDPIVCLF F // ID A0A151TQC8_CAJCA Unreviewed; 128 AA. AC A0A151TQC8; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At1g49475 family {ECO:0000313|EMBL:KYP69176.1}; DE Flags: Fragment; GN ORFNames=KK1_008363 {ECO:0000313|EMBL:KYP69176.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP69176.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP69176.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP69176.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP69176.1}. SQ SEQUENCE 128 AA; 14926 MW; 10CA41115609B210 CRC64; LQKIPNKFAM RYGSGLPNPV FIKPPDGTEW KVYWTTQNGE VWLEKGWKQF VEHYSLDQGH LIFFEYQGTS HIDVLIHDQS SLEIEYPYCD EKDNIDDNND DVILDEWPDQ KSKHITGNGS SFLSFLIS // ID A0A151TVY4_CAJCA Unreviewed; 869 AA. AC A0A151TVY4; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Auxin response factor 4 {ECO:0000313|EMBL:KYP71171.1}; DE EC=1.4.3.1 {ECO:0000313|EMBL:KYP71171.1}; GN ORFNames=KK1_010416 {ECO:0000313|EMBL:KYP71171.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP71171.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP71171.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP71171.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0008445; F:D-aspartate oxidase activity; IEA:UniProtKB-EC. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 2.40.70.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR021109; Peptidase_aspartic_dom. DR InterPro; IPR005162; Retrotrans_gag_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF03732; Retrotrans_gag; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50630; SSF50630; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Oxidoreductase {ECO:0000313|EMBL:KYP71171.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 783 869 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 783 869 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 274 297 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 869 AA; 100032 MW; 931D8A3A5F8C3131 CRC64; MRLFPFSLNR KAKAWLHSQP NQSLTTWRDV ETKFLARFFP PSKNTEARTA IATFAQGADE PLCEAWERYK SLLRRCPNHG FKVELQVQTF CNGLQPQTKM ILDASFGGSV MFRTAEEAIT IIESMASTDF RSQHGRSSSH KRGVLELNFS QHPYPQNSNQ GWRNNYGGNK PDMNASSSSR PPHQHQHPPL YERTTNLEDT LQQFMQLSMS NQKITDASIK NMEIQVGQIA KQLAEQQKGS FSANTEQNSK GHLNVVSTRS GVWRRSEGRE LVDKNKMKKE NDKKNEKEKE IEREKEGVSR GKKKASMEER SIVKVPPTKS LPYPHAPSRR DKERQYARFL EIFKTLQINI LFSEALEQMP TYAKFMKELL TKKRKYFEEE TITLEAGCSA IIQKMLPTKS KDPGSFTLPV TIRSLAIGKA LLDLGASINL MPLSMLQRIG DLEVKPTRMI LQLADRSVKY AHGIVKDVLV KVDRFLFPSN FVVMDIEEGI DVPLILGRPF MKTARVLIDV DDGKLKVTVN DEEVKFDVFD AIHYPKDKSS CFRVDVIDGL IEDTRKHVSF STPLEKVLIN VVEYLHEEMS SHSLMLDAPR QDRGADTDRP PQRICPKVPS FQRRTRRART WKRMRTPLLQ WLDLWSMLFH HANVVLVKKS SGKWRMCVNY TDLNKACPKD AYPLPSIDRL MDKVFHQQIG KNMEVYIDDM VRKTTSTGSH IVNLAEVFGE IRRHNMRLNP EKCAFGVQGR KFLGFMITNR GIEANLEKCE AIINMKSPQT LKLAGWLASL SRFIPDLVEK AKSIINLLRK PKEFDYKQQR PSQELVAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVNQ KNLVSGDAVL FLRCVYMFK // ID A0A151TX85_CAJCA Unreviewed; 658 AA. AC A0A151TX85; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_010895 {ECO:0000313|EMBL:KYP71628.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP71628.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP71628.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP71628.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 559 642 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 658 AA; 73444 MW; 31C3F61987F711B0 CRC64; MYDCIGVESC DELSRELWRA CAGTPVYIPR DGEKVYYFPQ GHLEQVAAYT QHQQDGQMEI PVFDLPSKIL CRVMYVHLKA EPFTDEVFAQ ITLAPMCKQG DLRLEEEGND GRPKIYSFSK TLTPSDTSTH GGFSIPKRHA DECFRPLDMT HQTPAQEIVA KDMHGFEWHF RHIYRGQPKR HLLTSGWSTF VTSKRLVPGD SCVFVSGENG GHRVGIRRAV NHSHAPPSST LISGHSMQLG ILTNVSHAIA TGTIFTVYYH PWMNPFEFVV PLKHYLNSTV PNYSIGTRVQ KHYELVEEPF RRYAGTIVGR EDIDSIRWPG SEWRCLKVQW DTILDAYNHP ERVCPWWIEP SGSAKETHVP VLPSPKRAHI LNQRPLPGLS GFAMDGAVQN SAKPASQAQR VGRDLQGQDY NGRCSPQPLQ TPPSTDGMRP SKVSASGSRF GKESQNQLPY LIQDPLRKSL GRPKSFAHED LSSSSLSSIG SESLGWPSSE SRNENEVPFD KLGGCSKYKL FGVSLIDRPP ELPSRQFDVF NKFSSLVTSP PMSVASGKTC NKCRSVNNRS CTKVLKLGTA LGRAVDLTRF LGYDELVAEL DSMFDFGGSL INGRSGWHVT CIDDDGDMML LGDYPWQDFL GMVQKMIICP KDGVNNFNPS TSADPPTL // ID A0A151TXL1_CAJCA Unreviewed; 273 AA. AC A0A151TXL1; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Putative B3 domain-containing protein At5g66980 family {ECO:0000313|EMBL:KYP71813.1}; GN ORFNames=KK1_011086 {ECO:0000313|EMBL:KYP71813.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP71813.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP71813.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP71813.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 31794 MW; 87C5579A4E8817F8 CRC64; MSNNSIILKE KKLPTSFTKF FNGITPCKTI LVDHDRNFWD IYLEKIEGRL VFKNGWQQFA KEKGLEEEDF LVFQYDGKST FNVKIFSRTG CRKVAAPSSC EKIVPSVILN KDSDLRSNKI QRGCKRKHSS PSLKTNEKLV VAEENDNHHE KKPCLTKCVP LQNPHFQIYF DAAWRLKKVE LPRRVLRKMN IKLMPNRIIN LRDENDTLWP VIITAGFGDR YFLGSGWSVF QRSNNIQEGQ QCDFQFVVDK ANVVQEMLVR VHSKCTMSWV DCK // ID A0A151TY55_CAJCA Unreviewed; 678 AA. AC A0A151TY55; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=KK1_011230 {ECO:0000313|EMBL:KYP71948.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP71948.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP71948.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003605; KYP71948.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KYP71948.1}. SQ SEQUENCE 678 AA; 75328 MW; 0B7167CDBC15ACA2 CRC64; VGGGDLYRQL WKLCAGPLVD VPREGERVLY FPQGHMEQLQ ASTNQGLNQE LSQQIPHFNL PPKILCRVIH CQLLAEQETD EVYARITLLP DSVQGEPMDR DPIPPETQKQ TFHSFSKILT ASDTSTHGGF SVLRRHATEC LPQLDMSQTT PTQELVAKDL HGFEWKFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGENGELR VGVRRVAQPQ SSMPSSVISS QSMHLGVLAT ASHAVLTRTM FVVYYKPRTS QFIIGVNKYL DGINRNVSVG MRFKMRFEVE DSPERRFSGT IVGVGDVSPG WPNSRWRSLK VQWDEPATIP RPERVSPWEI EPFVPSTALN VAQQVPKSKR SRPAEASSSE IGPSSPAPAF WYHGPQPHDP TPLGGTAEVQ SNESAVVRSL RLKEINGNPM NGKNNSSKVP VEGMWPSSPH LNVVSSNFLA DAKAVAAQSP ISGYAPVNDD SAPDPTECGK RSENPMDCWL FGVNLTNNFT NPALPDKELG CPTSGPKDSV PVAPCETDAP HNSNKEHKQI ISDERHTKQA NVPSTRTRTK VQMQGVAVGR AVDLTVLKDY DDLVDELEKV FDIKGELRVQ TKWAITFTDD ENDTMLVGDD PWPEFCTMVK KIFICAKEDV KKMKNKHCAS SSEGEETLLS QHSHNRDETQ QNSCDLTA // ID A0A151U151_CAJCA Unreviewed; 601 AA. AC A0A151U151; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os07g0679700 family {ECO:0000313|EMBL:KYP72991.1}; GN ORFNames=KK1_005598 {ECO:0000313|EMBL:KYP72991.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP72991.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP72991.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003604; KYP72991.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 2. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 415 435 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 274 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 274 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 601 AA; 67029 MW; 2BE2E82C7430CD60 CRC64; MCRSVCCRSA YANSIFCETF HKHQAGWREC NDCGKPIHCG CIVSRSLFEY RDSGGIDCVT CAQASQLRLM RATENLNAVR SIKNNANDRH TEHIDGRLMV DGAGKGKMVQ LCRIVEASEP SRWPQSEREV IDSCNGLNKQ DDTRFSNVMK PPSHSLAITT SENNGPTWVT GSMDKSHPLN ISIGTSSGNS VLTSALESLE ERLEGKALSS PFHQGQRSLS MKMEGLIPPQ ERIARPPADG IGKSLLLSRY WPKMTDHELE KLSECMKSIV VPLFEKTLSS SDASRIGRLV LPKSCAEVYF PPITQSEGLP LQMLDVMGNE WIFQFRFWPN NNSRMYVLEG VTPCMQALQL NAGDTVIFSQ MHPGGKYVFG FRRASENMSL LNQDAMPLEL YIQVSVSWLI NLCDLILLRN PRQTMMVFVL FWIHLFYPLM IQLLFNKFII SALAVIPQSL NSASKEMSPK ELDNILTTSK DLKKRRSIRK PDTAQEHEPH GLNALASAAA LGDDLVEPVG ATTKHPRHRL GCSCIVCSQP PSGKGKHKPT CTCIACVTMK RRCNTLMARK RKRGQSDDDA LARDEGDTNG APRDQIDLNS HPYPEDMQVD A // ID A0A151U1G3_CAJCA Unreviewed; 340 AA. AC A0A151U1G3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein REM21 {ECO:0000313|EMBL:KYP73101.1}; GN ORFNames=KK1_005714 {ECO:0000313|EMBL:KYP73101.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP73101.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP73101.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003604; KYP73101.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 40042 MW; 843073511E24F1BE CRC64; MLIPNVFVKW TRLKERIPED VILRNGSGRV WCVKTRRIGD KLFLDEGWKA FREENCVGKA DFMVFKYNGN KEFKVIVLEL STQCEKTVIK SEVEEEENMD EGKVAAEEDE EEHEGKTDDE DGEEEEDDDN NSDNDYNDND EFTEMEEESE EEHNFQYMKA SRSQSNSRAC KRETATSSTP KIEDPQIEDY EFDPEMYIQS GNPYFEAKVY KSRRNEMHVP ANVLRNSSLT FPEKITLLPC QCSQRQDIQR NELRKYHLSL SQQTPICRRY WEATKVSKWN DGRVCVRGWG NFCRRHKIKE KDVCICEIIS GEDQVIRTIR VHVLERMNRL RNCTSSKIGH // ID A0A151U213_CAJCA Unreviewed; 805 AA. AC A0A151U213; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_005936 {ECO:0000313|EMBL:KYP73316.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP73316.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP73316.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003604; KYP73316.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 669 755 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 805 AA; 88751 MW; C6939726C1AE9E0F CRC64; MKLSSSGFNQ PPEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SLQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLRRPWP PGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL GVTPWMQPRL DASIPGLQPE LYQAMASSAF QEMRTMDPSK SSQSLDQRQQ QQQLKSLPVQ QQLPNVISPL SNFASGTQSQ SPPLQALASH CQQQSFPEPI RNHISGSDVS PIQSLLGSFS QDGTSQLLNL NGSNSVISSA AIISKQITVE PQLPSAASQC VLPQVENLGT SQSNVSELAA LPPFPGREHS AYHGNVNDSL SLPFSASNCG GATGTDFPLS SNMTTSSCVD ESGFLQSSEN VDQANTPTGT FVKVHKSGSF GRSLDISKFS SYDELRSELA RMFGLEGQLE DPKTQRSGWQ LVFVDRENDV LLLGDDPWQE FVNNVWYIKI LSPLEVQQMG KVLSPSTSAP GHKLSTTDNS CDNYVSQQEL RSSRNGMASM GSFHY // ID A0A151U3H1_CAJCA Unreviewed; 309 AA. AC A0A151U3H1; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein At5g06250 family {ECO:0000313|EMBL:KYP73879.1}; GN ORFNames=KK1_006537 {ECO:0000313|EMBL:KYP73879.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP73879.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP73879.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003604; KYP73879.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 36047 MW; 48063577C02798C1 CRC64; MSVNHYSMDL PETTLWWPHQ QEQQQEQEQE QQPFHGNLNK EEEEEEYEAK ETTTTKQEET EEEKEAMFEK PLTPSDVGKL NRLVIPKQHA EKYFPLGGGD SAECKGLLLS FEDESGKCWR FRYSYWNSSQ SYVLTKGWSR YVKDKRLDAG DVVLFERHRA DNHRLFIGWR RRPHADNATA PAHVSRTLPH ATPPPAVPLD WTRPSFYSAH PYPAHHHPFP YQHAGRGTQG QNQRTSPSSR VLRLFGVNME CQAEHDSGPS TPQCSYNSNN MPTTQGTDTH HHHFYHHHHH HQPSSNPSPH MVRHQPYYY // ID A0A151U7N3_CAJCA Unreviewed; 135 AA. AC A0A151U7N3; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein REM19 {ECO:0000313|EMBL:KYP75312.1}; GN ORFNames=KK1_008034 {ECO:0000313|EMBL:KYP75312.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP75312.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP75312.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003604; KYP75312.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 135 AA; 15099 MW; 79C950254CCD453A CRC64; MGEDRGGATK SVKVEQVTSK VVETSRSKAP SFFIVLKASY VNGHSVVIPS KFVKKYLKEK RSDDILLRVL DGRTWTVNFR NGRFCAGWNK FASDNHLKEG DVCAFGLTKS QGHCFEVTII RISEETHLSG NNSWS // ID A0A151U856_CAJCA Unreviewed; 323 AA. AC A0A151U856; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=AP2/ERF and B3 domain-containing transcription factor At1g51120 family {ECO:0000313|EMBL:KYP75506.1}; GN ORFNames=KK1_008245 {ECO:0000313|EMBL:KYP75506.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP75506.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP75506.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003604; KYP75506.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 83 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 147 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 83 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 147 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 37282 MW; 99C062F305B8CF99 CRC64; MESSSGSSEI MFALDAAKRA RHEENVHKFK GVVPQQNGNW GAQIYANHQR IWLGTFKSER EAAMAYDSAT IKLRSGECHR NFPWNDQTVQ EPKFQSHYSA ETVLSMIRDG TYPSNFATFL STHQPQQSLA KHISLKGDEQ FCCTQLFQKE LTPSDVGKLN RLVIPKKHAV TYFPYANDES VDMEVVFYDK LMRLWKFRYC YWKSSQSYVF TRGWNRFVKD RKLKAKDVVA FFICEPMSWA KGEAFSMIDV VYNNNNNNNN NAVDHERSQC FGESKKDTKQ ILGCEDEDED EDEDEDENEN RDGNIGKDLS SQKGLRLFGV CIS // ID A0A151U8D9_CAJCA Unreviewed; 389 AA. AC A0A151U8D9; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os03g0120900 {ECO:0000313|EMBL:KYP75557.1}; GN ORFNames=KK1_019747 {ECO:0000313|EMBL:KYP75557.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP75557.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP75557.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003603; KYP75557.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 389 AA; 43676 MW; A0346A90C1050B50 CRC64; MELMQEVKGY SDSREEEEEE EAAEEIITRE ESSRLLHQHQ DAAASNFIIN NHQHHQTTNQ LDFMDLSLGS SKDEGNLQGS SGGGVYGHHH GSATASSSAN GNNLQQQPAE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRN GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGELYRH RLYIDWRRRF YSLPSPTPPR HHHHDHLQQH LNYNTTMSTP PSMPISDHQT LGTRQQQEGG NASLSPMIID SVPVAHNHHH HPYHGAKSGS SASTSPSTAG KRLRLFGVNM ECASSTSEDP KCFSLLSSSS SVAHSPSLPP LQLLREDTLS SSSSSARFGD QRGEPSMLFD LDPSLQYRQ // ID A0A151U9P4_CAJCA Unreviewed; 754 AA. AC A0A151U9P4; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=KK1_020265 {ECO:0000313|EMBL:KYP76045.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP76045.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP76045.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003603; KYP76045.1; -; Genomic_DNA. DR Proteomes; UP000075243; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 632 714 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 754 AA; 83658 MW; E6CB54BFC291233A CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EIDGHIPNYP SLPPQLICQL HNVTMHVDIE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSIF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSLHDGRD EAANGLMWLR GGHVDQGLNS LNFQGAGMLP WMQQRLDPSL LGNDQNQQYQ AMLAAGLQNL ANMMTENLSQ HLLQKPHNNQ EVQVQQQQHT FQDTLLIPGQ NMLSSLCPEG SGSLLNLSRS GQSLLTEQLP QQQWTQKYAP GQVNAYGSTM SHAQYSGKDS AMVLPHCNSD AQNPTLFGVN IDSSGLLLPT TVPGYTTSSA DTNSSTMPLG ESGFQGSLYG CMQDTSELLQ SVGHVDPQNQ SQTFVKVYKS GSVGRSLNIS RSYHELREEL GQMFGIEGKL EDPLRSGWQL VFVDRENDVL LLGDDPWESF VNNVWYIKIL SPEDIQKMGE QAVESLALSS GQRLNGAESQ DIVSGPPSIG SLEY // ID A0A151UHX6_CAJCA Unreviewed; 198 AA. AC A0A151UHX6; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing protein Os11g0197600 family {ECO:0000313|EMBL:KYP78926.1}; GN ORFNames=KK1_049116 {ECO:0000313|EMBL:KYP78926.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP78926.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP78926.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KYP78926.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AGCT01065047; KYP78926.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 198 AA; 22592 MW; C0218425C04D0A56 CRC64; MTIVKSTLSS PPPCKKMKNS ITTNVERSTN GVNLHRRIQT RSTSSQKTKF IKQELDEDES KGVFNTECTK VEQLTSTALT KATAFRSEQP FFTLVMKPTY IIGYYLDIPR EFSKQYLKRT HAVVILEVLD GRSWPVIYSA PRINGGWQKF ASENNLKVGD VCVFELIQKI QGLTFKVFIF PAISQGNPLF HFICTMRI // ID A0A151UI03_CAJCA Unreviewed; 69 AA. AC A0A151UI03; DT 08-JUN-2016, integrated into UniProtKB/TrEMBL. DT 08-JUN-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:KYP78925.1}; GN ORFNames=KK1_049115 {ECO:0000313|EMBL:KYP78925.1}; OS Cajanus cajan (Pigeon pea) (Cajanus indicus). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Cajanus. OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP78925.1, ECO:0000313|Proteomes:UP000075243}; RN [1] {ECO:0000313|EMBL:KYP78925.1, ECO:0000313|Proteomes:UP000075243} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243}; RX PubMed=22057054; DOI=10.1038/nbt.2022; RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., RA Schlueter J.A., Donoghue M.T., Azam S., Fan G., Whaley A.M., RA Farmer A.D., Sheridan J., Iwata A., Tuteja R., Penmetsa R.V., Wu W., RA Upadhyaya H.D., Yang S.P., Shah T., Saxena K.B., Michael T., RA McCombie W.R., Yang B., Zhang G., Yang H., Wang J., Spillane C., RA Cook D.R., May G.D., Xu X., Jackson S.A.; RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume RT crop of resource-poor farmers."; RL Nat. Biotechnol. 30:83-89(2012). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KYP78925.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AGCT01065047; KYP78925.1; -; Genomic_DNA. DR Proteomes; UP000075243; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000075243}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000075243}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 64 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 64 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 69 AA; 7987 MW; 957643FDD9491B33 CRC64; MMIQFRKNLW PVKFAFHSSG VSGMFSVGWH SFARENELQI GDVCIFELVN GEDGILDLHV FRDQCEVMH // ID A0A161X435_DAUCA Unreviewed; 349 AA. AC A0A161X435; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM87193.1}; GN ORFNames=DCAR_024327 {ECO:0000313|EMBL:KZM87193.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM87193.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM87193.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM87193.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM87193.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM87193.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 250 347 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 250 347 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 40878 MW; E78F41232A13625F CRC64; MNFPKFVPDF FKYLTCEDCS SMYMEIPQKF CNMQQNTLQG NWILNIRNGY TMHVTYDHQN LRLEGMSDLF TDFQLVDGEV LIFQFVDGTN FNVYIMCEDG SEMEYPSVLH ASQLLSPNPV SVSENKEGQK FLKFISNADP TFDEVVLLIA FWRKFGAKIP EWFAYVLKNH FRFGGHFEFT KRKQSGLKKI CEGLKLSKFE KFELLVFTYD SGRLFTLTLF DGSSVEVCLD VQAITLGTLF LTLRYPCAFK VQVMPSHMLA HCPRVTVSVQ FKRITNEWKN SDNISIYKGN LSWKFEIKKY RASNRTTIYG GWIQFRDDMQ LNVGDLCYFR WINESYHHFR VEIIRAASD // ID A0A161X459_DAUCA Unreviewed; 444 AA. AC A0A161X459; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN05735.1}; GN ORFNames=DCAR_006572 {ECO:0000313|EMBL:KZN05735.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN05735.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN05735.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN05735.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN05735.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN05735.1; -; Genomic_DNA. DR RefSeq; XP_017232321.1; XM_017376832.1. DR RefSeq; XP_017232322.1; XM_017376833.1. DR RefSeq; XP_017232323.1; XM_017376834.1. DR RefSeq; XP_017232324.1; XM_017376835.1. DR GeneID; 108206511; -. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 444 AA; 49975 MW; F33A7155E505383C CRC64; MMMIDNNGGE NDVDEVIIEG RRRDGHVIVE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRS GKQWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDVVSF QRGMGEIGRD RLFIDWRRRP DAPSSSASSH YHHLLGTGLV PSASSLALQP QYYSSFQRAS NAPWSPSLFL QQQQQQPLSS TPQYYPNYPH NYRDQYSSHL LLPPPPNVTG HHNPHSHFYH PTNYMSATRS TAHHHPLVSP AGPCSGSVIY YNRSAPFSQE QEQQHEEDVE MAQAQRAGWG EFEPNVVFES VPVVHGKTAP KRLRLFGVNM ECPINTSGSS NSDDNIIVEC DNNMTILSSS STASAMNIPN IRTSQGPYPY NFCSSAPPQP LPPLMSNPYD TSSSNIPYVQ LSPQTATTST TSTLHDLMNK GKMSMSFDRN EGHS // ID A0A161X7Y2_DAUCA Unreviewed; 329 AA. AC A0A161X7Y2; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM88603.1}; GN ORFNames=DCAR_025678 {ECO:0000313|EMBL:KZM88603.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM88603.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM88603.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM88603.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM88603.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM88603.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 37076 MW; 332317650F579CA0 CRC64; MEASFTSHHH AKARCFFKII LCEISSKSKL TIPEKFVRKY GGELQGGVLL KAPGAPPWSV DVQREEGKVW LRNGWPQFAK FYSLCFGHFI FFEYQGNCNF KVVIFDTSTT EIDYPVQFEE RSGSDQLQVF KKKQVHSGCD AACYLGESLK GRLLKEKIAE ALSETSISDE NEHGGIEKPS HANGTPHDIP MRQHIVKAGG VSSPAEEKDR AHARAKALKS IHPSFKVVMQ PSYVGKTYGL YLRKSCLKSY IRKGVDVLIL RIARRSWVVK CRVVRSNRLK LGCGWQQFAE DNALAVGDVC VFELVSPSKK LIDVVIHRAV KEEEEEDIN // ID A0A161XD41_DAUCA Unreviewed; 78 AA. AC A0A161XD41; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM90603.1}; GN ORFNames=DCAR_022032 {ECO:0000313|EMBL:KZM90603.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM90603.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM90603.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM90603.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM90603.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM90603.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 64 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 64 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 78 AA; 8809 MW; AE37F772E27F0CC9 CRC64; MPSEDAKVVL VDEAGQERDT TYLAKHHGLS AGWKRFAMEH ELVKGDVLVF HMITHYIFKA IKKSSPPARA KVVKFKTS // ID A0A161Y330_DAUCA Unreviewed; 346 AA. AC A0A161Y330; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM86549.1}; GN ORFNames=DCAR_023683 {ECO:0000313|EMBL:KZM86549.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM86549.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM86549.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM86549.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM86549.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM86549.1; -; Genomic_DNA. DR RefSeq; XP_017215350.1; XM_017359861.1. DR GeneID; 108193272; -. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 346 AA; 39142 MW; C0ADF9DDAED7C61E CRC64; MDGSCLDEST STETLSTTLT ASIFTSSPTL FPKSPESLCR MGSGTSIILD SESGIEAESR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEHEA AKAYDIAAQR FRGRDAVTNF KLLSQDDDVE IMFLDAHSKA EIVDMLRKHT YIDELEQSKK TNGYKKRMDK NDPSVKSMDR LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL QNGNTSKGVL LNFEDFGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLN AGDIVSFQRS NGVDKQLYID WKPRDGADSG IRVGSDFAPI QPVPMVRLFG VNIFKVPEDG VDGNGKRARE MELFQVPNNN KKHKDR // ID A0A161Y7W7_DAUCA Unreviewed; 655 AA. AC A0A161Y7W7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_006434 {ECO:0000313|EMBL:KZN05597.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN05597.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN05597.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN05597.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN05597.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN05597.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 569 652 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 655 AA; 72292 MW; A108B22A284E1F81 CRC64; MNRPLNEQEK CLDSQFWHAC AGGMVQMPQV NSKVYYFAQG HIEHAQEINV DFKNLPRVPP LVLCRVSGIK FMADIETDEV YAKVRLVPLR SSEIKYDEEG FVGFDKSQGE EKSASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTILAKD VHGQVWKFRH IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKRG IGGGLESPCG WNTSNCAPRY GGFLGHASGA FDGGESGTRK VSGESVSEVA ARVAEGQAFE VVYYPRASTP EFFVKASSVK AAMRIHWCSG MRFKMPFETE DSSRISWFMG TISSVHVDDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNMPA IHQSPFSPPR KKLRVPQPPD CSLLGQLSMP SVLSNPLNIP AGIQGARHAQ YGLFTQDPHF HKLQSGLFPF GFQQLDYAAA LPSKIPIHEF NKPPENNENI SCLLTIGNSS PSSNNNGKSK ATHSFYLFGQ PILTEQQISQ SCSGDTVGSS SLNGIANPSD GSGSAVIQNG TLDSSSDEQK SGFSETDTTG HCKVFMESED VGRTLDLSAL GSYDELYRKL LNMFSLEKSE MLSNVLYRDE AGAVKHTGDE PFSNFTKTAR RLTILMDSSS DNMGR // ID A0A161YNH9_DAUCA Unreviewed; 452 AA. AC A0A161YNH9; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM95379.1}; GN ORFNames=DCAR_018621 {ECO:0000313|EMBL:KZM95379.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM95379.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM95379.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM95379.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM95379.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM95379.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 212 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 325 415 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 212 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 325 415 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 452 AA; 51175 MW; 6A23BB6C295FFBCD CRC64; MCTASGCSPY ILSVAAPAIL QHVHSHNCLG NKTLQFLLIL HLDLYWQLLF ASSAWRVLLR VNFNMKWGER GSTFVCPNFG SDYIAGILIL PKEFPIENSG PIPERLLLHV APGVVWNGKY SVERNWIEGL EKMMLYYCIK PYYLIAMEYI GGPSFNLQIY NPYGVEVNYT VTDKSETLSS MDRSFFNFSD IEVDKLCGTM FSNVYNSGLH VYDLLISSSH LLKKDHTKIL NRYACKQLGL LEEMKSVTLF FKNMSWVVNL KWDNGKAYMD RTWYDFARAS RLKEGDICAF MLSGPPGKFR VCVYEPDLLT KCNEKGIGHA SKVTNWFKIV NDVVLYAGQM EIPRVFMEMN GGVLEETVNL IMGDGRSVAV NFSRSQSFLH GLKTLVDTYS IKLNDVMVFH FLSDSTFAVS LFKATGMEYK LNSRHDAATK KTGGIREEEI IILSDSSGEG SL // ID A0A161ZIU8_DAUCA Unreviewed; 896 AA. AC A0A161ZIU8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM86842.1}; GN ORFNames=DCAR_023976 {ECO:0000313|EMBL:KZM86842.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM86842.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM86842.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM86842.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM86842.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM86842.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 329 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 329 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 896 AA; 98502 MW; C7C7E8AAB0F9C454 CRC64; MGSKVCMNGL CGATFGDGKR GWPLRSGGFA VLCHSCWTLY EQLAFCDMFH SDDSGWRECI SCGKRLHCGC VASSSLLEIL DSSGVICIRC AKGSGDQPKG FESPTGFGTS VEKYVGETHF ASTDNQINVD CIHGINLKQF NNLADGDGPK QFLPSQDGNI VGSHCQMKQE GSIPPSADTG ITCFSNFGRL SAGSSYDAKT KVCEGKEYSD VKDIYGSAVQ TNLTISLATP SLIQHSSPTA VCEVVKSTKT VSSFQSESRT SHVLPKASQP DVTERLDPNA NMISPIRVAR PPVEGRIKNQ LLPRYWPRIT EQELQKISGD SNSTIIPLFE KILSASDAGR IGRLVLPKAC AEAYFPPISQ PEGIPVRIQD VKGEEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG KLLMGFRKAS NNLMQDTHFS GKHTGSFASE PFLSGVIENL PAMSGYSGLL QSMSGGTDPH LKVFSKNLSS SSGDVIWHVT DKPGGKRIID SLPPTLLAPE KKRSRNIGLK SKRLLIENQD ALELKLTWEE VQEMLQPPAS VRPTTVTVED HEFEEYEGPP VLGKRSIFTV RSTGEQEQWT TCDGCSKWRR CSCSAPDELS PWELEQLFKL NNDFKRRRIT VFDQMSTHNH DSNFPGVLAS SSVQGEVTDL GATAVATTTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMLRKKKRQ SDREAEIAQR NQFLWGPKEE VEVDSTSQGR RLLNLSENGS RSGSEPQAYD ERNNQVDRAI NANTDKLDLN FQPNSGEDLP IKSTQVSMIS LVQVATRPLE MYLKQNGLTS LIPEQQTSSG SHVPPQDITE SEGHPHQDQS LAQEDPPGSD DKVSEAGQTG TNLDQP // ID A0A161ZKS4_DAUCA Unreviewed; 329 AA. AC A0A161ZKS4; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM86620.1}; GN ORFNames=DCAR_023754 {ECO:0000313|EMBL:KZM86620.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM86620.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM86620.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM86620.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM86620.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM86620.1; -; Genomic_DNA. DR RefSeq; XP_017217523.1; XM_017362034.1. DR RefSeq; XP_017217524.1; XM_017362035.1. DR RefSeq; XP_017217525.1; XM_017362036.1. DR RefSeq; XP_017217526.1; XM_017362037.1. DR RefSeq; XP_017217527.1; XM_017362038.1. DR RefSeq; XP_017217528.1; XM_017362039.1. DR GeneID; 108195101; -. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 37054 MW; EED3E667E1F75D3D CRC64; MKNLLNVTAH MLGQASGSDD MRHNLSCTKR ARQDRNIFSS GPKGVVALLS GNWAAHVYLN HNWICIGIFK TENEAVRAYE SSTAKILVDC LNINLQKRSN TAQELNILKQ ARIDGTGSCR SVNTSQVHGT QKFTRTQLFE KVLTPSDVGK LYRIVIPKMY ANCFSSISDG NKSSSEVLPF NDEIAFYDRS MTLWKFRYCY WKASKSYVFS SGWINFVRAN KLNSKDKVIF FKCEHVETAV VHTYFAIDVE YYADRGGVEE ASSNSGKYVT NGEQFHLKEG VQNINDEQND CGTACTRHKR NIEVDNDLER TGSGKAPQTS FKLFGVKIA // ID A0A161ZML6_DAUCA Unreviewed; 303 AA. AC A0A161ZML6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM88602.1}; GN ORFNames=DCAR_025677 {ECO:0000313|EMBL:KZM88602.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM88602.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM88602.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM88602.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM88602.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM88602.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 34287 MW; 7003AD4A6C5920AE CRC64; MKNRRIVRGA PMDPLRSSSA VKPRCFFKII ISHITPHSTL TIPRRFIAQG YDLADKVFLK APESSVWVVD LERTTGEAVL RNGWPEFAAY YSISIGHVIL FKYEGNSQFH VTILDNSCTE IEYPMSASHN EQANRSGGFR KRKEQALITS KEGRKIKGTG IVKPDTVIPS QAKGASESAI EEGKARALAL AKAFKSNKPF FFRRVYPSHV DGTQHGMHVT TAFKEAYENW KDNEQLTLQI AERTWQAECR WTSIGYKIGK GWCKFARDTS LATGDVCVFE LVNSSQKLFE VIIYRATVKN ENW // ID A0A161ZQ58_DAUCA Unreviewed; 753 AA. AC A0A161ZQ58; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_025655 {ECO:0000313|EMBL:KZM88580.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM88580.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM88580.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM88580.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM88580.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM88580.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 176 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 176 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 753 AA; 83226 MW; D0389DA2D0149AA2 CRC64; MTSTEVLSKG ANNPRGASLY NDRNDVGAAP ANSGGGKGKF RLFSGDGDRD LVAYMFVRVF VGVVDADTAL YTELWKACAG PLVTVPRQHE LVYYFPQGHI EQVEASTNQV AEQQMPMYNL PSKILCRVVN VNLKAEPDTD EVFAQVTLMP EPNQDENTAR KDPVPPPQPH FNVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMTRQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGDL RVGVRRALRQ QTNVPSSVIS SHSMHLGVLA TAWHAIQTGT MTSPSEFIVP YDQYMESVKS NYSIGMRFKM RFEGEEAPEQ RFTGTIVGTE EADPKSWPGS MWRFLKVRWD ETSSIPRPDT VSPWKIEPAL SPPALNPLPV PRQKRPRSNL LPYSPDSSVL TREGSSKVAT DPLPSIGFSR VLQVQEISTL GGNFAESIES DLSDKPVVWP RSTDDEKTDV PTSQRYRSEK WSPLGRGESS FTDLLSGFGS QTNSSHDLVV PSSVQTTATA NSKKLQLHEE EGNFNSVSSR WPMMSSNLSL NLGSGSNGHM QGSDAYQTRR DTRYGNYNNC LVQPGHMGDQ NQGLMPPPHS YYHSMPVHSR EAMPRSSPTG QEANKPKDRN CKLFGIPLVS STVTTETVAA QRNTMIEAAG DMHLGLQPHR SPIFESDKWS EHLKGSKVAI NSIAHDEQEK SLPSCQPTVK DGQSKVPGGS TRSCTKVIAC VNT // ID A0A161ZUS4_DAUCA Unreviewed; 484 AA. AC A0A161ZUS4; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM90560.1}; GN ORFNames=DCAR_022075 {ECO:0000313|EMBL:KZM90560.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM90560.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM90560.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM90560.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM90560.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM90560.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 383 482 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 383 482 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 484 AA; 55537 MW; 32F9F87811F5C0A7 CRC64; MPAAQISVSL KYLKPAKMAS AFSDNGPSFF TLLHHRRIPA VFKGMIGERY PCVIYLKVSS GPWFKIVVCD DDNEKMAMKE GLKGFLLSNN ITMSNFLVFC FDGVSSFHVQ VFEPSGLERV PENKEQLETI GTPNGKRKPG RPRKYGKDNH VLRGKKEQQY QDYGKEPSKK IPAFFKAFIT EEAHRRLNIP LAFTEYLEGK IAHTAFLRNR KSYVWTVTTT KSRNQYSFDN GWPEFVEQND VHLGDFLVFQ YDGKCTFDFK HFGTSMCEKE AKILSFKIEE EYGEGFDREA ETSEKKYADS DNSFSDVNDE NDGDEDDEGD NDVVLEDEKD VGEDAGYDYD DDNFDGDEDV EGEDVDEEVS VKDVETNEED AIFKSGIVER PKNPYFVAKI LPSRRSDLFV PSDVIKDFNL KLPKDLCIFV KHGRRWKTEV KVWKDGRTVL SKGWRPICKW NNLQLDDRCI CEFVPGDGEE GLFLQMTIVR AGSW // ID A0A162A332_DAUCA Unreviewed; 701 AA. AC A0A162A332; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_017703 {ECO:0000313|EMBL:KZM94460.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM94460.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM94460.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM94460.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM94460.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM94460.1; -; Genomic_DNA. DR RefSeq; XP_017249350.1; XM_017393861.1. DR GeneID; 108220171; -. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 77236 MW; 5DD2AEE6E81E2EDB CRC64; MITFMDSNEN LREIEKCLDS QFWHACAGSM VQMPPVNSKV YYFPQGHFEH SCQNVDFVNR VPPYVVCRVL SNRFMADPET DEVYANMRLV PVSGNEVNCD DDESLSDAQD KPTSFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTILAKDV HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRAENGDLC VGIRRAKRGI GGNPESTSGW NPAGGNCAVP YGGFSAFLRD DENKLTRYGD GGSPCGSGSG MNKGKVRAES VIEAATLAAN GHPFEVVYYP RASTPEFCVK ASQVKSAMQI RWCSGMRFKM PFETEDSSRI SWFMGTISSV QVADPMRWPD SPWRLLQVTW DEPDLLHNVK SVSPWLVELV SNMPSIHISP LSPPRKKLRL PQHPDFPLDW QLPVPTFSGN LLGHTSPFDH FSDITPAGMQ GARHTQYGLP LPEFHFNKLQ SGLFPPGFSP FGHGCIPTRP SINPSFNKSR SSENISCLLS IGNSAHAAKK ADDQKPQQFL LFGQPILTKQ QISVSSSGVT VSPVCAGNSS SEGDVDKVSN LSDGDGSASG SGFALRQHAI RERPSCEGHL QYKGNPQEAD ANLEIGHCKV FMESEDVGRT LDLSLLSSYE ELCRKLATMF GIESSDMLNH VLYRDIRGAV KHIGDESFSE FTKTARRLTI LTDASSNSIG I // ID A0A162A4M5_DAUCA Unreviewed; 375 AA. AC A0A162A4M5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM96142.1}; GN ORFNames=DCAR_019384 {ECO:0000313|EMBL:KZM96142.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM96142.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM96142.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM96142.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM96142.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM96142.1; -; Genomic_DNA. DR RefSeq; XP_017252209.1; XM_017396720.1. DR RefSeq; XP_017252211.1; XM_017396722.1. DR RefSeq; XP_017252212.1; XM_017396723.1. DR GeneID; 108222808; -. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 41568 MW; 97207F47CD5D1B1A CRC64; MGDLLNFTAF ILGLPSGLNS RRDDQSSNER ARHNRNISGS SSVGVIKLPN ENWEAYTYDN NNWSSIGIFE TEKKAAIAFE SRTIEKYIEF WNGYLQRISN GEQEPLTLEL ASTRRTLSSS SGNISQGNSN RECIRTKLFD KVLTSSDVSK INRLVIPKTF SGFFPCISNE NGSSSRRLPV NNVELNFYDE SKKLWQFRYC YWKKSRTYSF SKGWSKFVEE KDLRPKDKII FLKCEYIEAG SIVGTRFIID VEYDPSRVQV EEVGDDLGDP VVLSPSQEVQ NLQNEENGGE VRRGSADGRS AKRTKADKDS KGAGPGEAAG RGAKRTKADK NSEGAGPGEA AETGAKRTKV DKNSEGAGPG EAAETGFKLF GVRIA // ID A0A162A6W9_DAUCA Unreviewed; 422 AA. AC A0A162A6W9; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM97062.1}; GN ORFNames=DCAR_015576 {ECO:0000313|EMBL:KZM97062.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM97062.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM97062.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM97062.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM97062.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM97062.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 387 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 387 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 49386 MW; C86FE37BE7F3234A CRC64; MPCSWKMFYP MILWWNTLKK YHVMFGYTCH QVLYGGGVYS NSHKWIEGLS NFMITYGVRP YYMLSLEYVG GGHFNVKVFS PTAVEINYET KYSDEDLEGM SRGSLIKTDE ILNLGIDDNV KWLEIGFKYF SWLVKLKWKN GYIYFDKEWY KFAKAAELNE GDICSFVRTN YPKRFEICVY TADYLEKCNI KGLGSDTGVM KWFKCLDKKC CLNGQLEIPR LFVEQYANLV NDIVTVVMAD KRTFTLSYYN KLCYLYGVEK IVQTYSLNVN DVMIFSYVAL STFEVSVYKS NGGMDLFFKG RNFHVSNQLS NGADPEEHDE LNTMVNNSNN AIVLKKSHVD KRGHGVFLPR DLLPIYKSWK SLTTVKLVCE DEEFQMKVWR AQNMCRLAKG WTKFTIKKEL KEGDKLVFVY RNRRTFDVTV EE // ID A0A162A9K2_DAUCA Unreviewed; 245 AA. AC A0A162A9K2; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 12-APR-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM97500.1}; GN ORFNames=DCAR_015138 {ECO:0000313|EMBL:KZM97500.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM97500.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM97500.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM97500.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM97500.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM97500.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 157 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 245 AA; 27810 MW; 3144CA0B3417BF90 CRC64; MAGDQENATA ILSNSSGTDT SNCSGSLNKK RKARVLMPEA PVPREVNESM VELQFEKKLT RSDVEGRQHR IIIPKAYGEI LFPETATRAC FYFMDDMAAA KVWTFLIRSW TKGASKTYVL EGTEEYIQEH GVKEGDYIKI YKDHETSRFA IGWRKNDQDT DKSLADGLKK VDSPATSSEI ASDQKNGIPA NSSRVAFAND YHPYFSPHDE TYDISINDVV DPEYVQKNFN MTWDEFQGFN PFEFP // ID A0A162AA99_DAUCA Unreviewed; 591 AA. AC A0A162AA99; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_014788 {ECO:0000313|EMBL:KZM97850.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM97850.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM97850.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM97850.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM97850.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM97850.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 591 AA; 65644 MW; 7F98D21586D6955A CRC64; MATNRQLLKV EPAIWRACAG TSVHIPAVNS RVYYFPQGHS EQSASTPTFS PLVFARPYTL CCVRGVGFFA NPETDEVFAK MHLVPVPSDQ SVLLRNEQGD VEDENDVVSF SKILTPSDAN NGGGFSVPRF CADSIFPALN FEADPPVQNL GVRDVHGVLW EFRHIYRGTP RRHLLTTGWS KFVNNKKLVA GDSVVFMRNR RSGEISVGIR RAVKANADCN GRWNYYEDKR EREGFSRDVR GRVAVEAVEE AAELAAKGLG FEIVYYPGAG SADFVVKAEK VERSFSVFWT VGMRVKMAVE TEDSSRMTWF QGTVSSAVLP DIVFIVAILI FHCLFTIPSR VICANYTQFA QVTWDEPEAL QNVKRVSPWQ VENVVATPSL HSEFHPTKKC KLSQDPGLLS AGDGELLFPM PFLSHSLMGH LNPSWMNYNS FPAGIQGARQ DQICVSGVPN NILENSQQIC SKFFVGDMSP MAETTELNIG SAQVDNLSPD SRSSVHFFGN EQVGKQRVSK CSQKVGISSF QLFGKIIHIN NPIEGGLDDV KCTGEDGSKI YREGRVDHPL KRSLTYPFTE FFGTVDVQCQ RDSASEDVYS E // ID A0A162ABF0_DAUCA Unreviewed; 519 AA. AC A0A162ABF0; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_014278 {ECO:0000313|EMBL:KZM98360.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM98360.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM98360.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM98360.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM98360.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM98360.1; -; Genomic_DNA. DR RefSeq; XP_017245681.1; XM_017390192.1. DR GeneID; 108217357; -. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 106 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 519 AA; 56744 MW; FF3469DA9E8C53FC CRC64; MAAQSEFRPV DPTVWRACAG NFVHVPAVGS RAYYFPQGHA NAINTSASLI QSQPFVVCRV LGVDYLADME TDEILAKIQL FPVESESAES TQSESPELTQ PEFASVVKVL TPSDANNGGG FSVPKSCAET VFPPLDFAAD PPVQTLMVKD VLGAVWEFRH IYRGTPRRHL LTTGWSKFVN AKKLVAGDSV VFMQSKRSQQ NFVGIRRAAK AKNVASTSRW NYLDLKEGEE DKSAENAVKQ VMEKAVKGLG FEIVYYPKID VSDYVVQAER VESATFGVDW MIGTRVKMAM ETEDLSRMTY IQGTVSKIHQ VGGVQSPWKM LQVTWDDPEV VKNVMNVSPW QVECVSLLEQ SEVPAAKRSK LSVDAGSPLH REGAVIPGDG EIFEDAGLLP GRDGELFPVT RSSSSVAEPF NADLNPLLMN AGSYPGGIQG ARQDHICVSG ISNFFHENTH QFDITFSVCN RSPVTEAVYT EGDTVSSSSA DPPKEIQFFD NEAVGTQGCS DSPKVGINSF QLFGQIIHL // ID A0A162ADG7_DAUCA Unreviewed; 274 AA. AC A0A162ADG7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM99220.1}; GN ORFNames=DCAR_013418 {ECO:0000313|EMBL:KZM99220.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM99220.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM99220.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM99220.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM99220.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM99220.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 58 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 58 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 30830 MW; 0E09D45AEBDF18C9 CRC64; MSMNHLSSEK LWWMESPTKG AVPQNTLFDF NQNHQENHQS NQDGEDREGI VAEREAMFEK PLTPSDVGKL NRLVIPKQHA ERYFPIGGAS SGGAGESVEK GLILSFEDEL NKIWRFRYSY WNSSQSYVLT KGWSRFVKEK QLQAGDTVVF ERFRDDGDRF FIGWRRRSTA VAPPAGGWTP GLYSGHPYPS QNSRPNGPPL PYQPHCPHAE RAEASAGVQN QTSSGSSRTL RLFGVDLECQ LEEPSPDGPS QLAARIQDMH IQKATVEILL EDLN // ID A0A162AH50_DAUCA Unreviewed; 577 AA. AC A0A162AH50; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_001722 {ECO:0000313|EMBL:KZN09066.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN09066.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN09066.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN09066.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN09066.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN09066.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 496 575 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 577 AA; 64626 MW; 6D59F2CCF6509D66 CRC64; MVQDAANHPS KKARSGEASN ALFKELWHAC AGPLVTVPQE GERVYYFPQG HMEQLEASTH QGSDQQLPLF NLPAKILCKV MNVQLRAEPE TDEVYAQITL LPEQDQNEVM SPDPPPPEPP KYTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRQVLGE NGELRVGVRR LMRQLNNMPS SVISSHSMHL GVLATASHAI ATGTHFSVYY KPRTSRSEFI VSLNKYLEAQ SQKLSVGMRF KMRFEGEEAP ERRFSGTIVG VGDGTTSRWR DSEWRSLKVQ WDEPSSVLRP DTVSPWELEP LVAATTPNSQ PPQRNKRARP PVLPTQTTDI PTLGLWKAPA DRPSAVGYCD PSRGQDLFSS PKFSSGAIES ISPVVSKGTV EKRPGNGYRL FGIDLVDPST VEDTPMIVSG AVVDDLSLTL QVESDLHSEP YDADQSDLPS VHMQGIAVGR AVDLTRFNKY EDLLRKLEDM FEIEGELCGS EKKWQVVYTD DEDDIMMVGD DPWQLSFVIL FFFHTKY // ID A0A162AQX7_DAUCA Unreviewed; 663 AA. AC A0A162AQX7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_005400 {ECO:0000313|EMBL:KZN04563.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN04563.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN04563.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN04563.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN04563.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN04563.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 550 641 PB1. {ECO:0000259|PROSITE:PS51745}. SQ SEQUENCE 663 AA; 74104 MW; 4AC65958FD74441C CRC64; MEKNDLYTEL WRACAGPLVE VPSRGERVYY FPQGHMEQLR ASTNQELDQH IPKFNLPPKI LCHVVHVQLM AEQETDEVYA QITLHPEVEQ AEPTSPDPCV PDPPNPPIHS FVKILTASDT STHGGFSVLR KHANECLPPL DMAQATPTQD LVAKDLHGFE WRFKHIFRGQ PRRHLLTTGW STFLMISSFA LRDDVGELRV GIRRLAGQQS SMPPSVISSL SMHLGVLATA SNAITTHTLF VVFYKPRTSQ FIIRLNKYLE AVSHKYSVGM RFKMKFEGED PPERSFAGTI IGVGSISPQW SDSQWRSLKI QWDEPASIHR PEKVSAWDIE PYTASNSIDL PPPAMKIKRP RPIEIPLTDA TSCAATAPFW YSGSNTTVEH CNLGGAPESE RSESQAVCPP KQKDNNGTCI ISGGLTDGSW KSSMNLFREP VGDKKYVIHP SVMPEYNSAV SSRASNNLFK DQLELDTRTE PSNSCRLFGI DLRNSNIPSP AKEVKDSSAA ADSGKKTFSA AQLEANTAAD LDLNKENEKV LLETIEEENM NKHGTCASKR TRTKVQMQGI AVGRAVDLSL LEGYAELVTE LEKMFEIKGE LKERKKWQVV YTDEEGDMML MGDHPWPEFC TMAKKIFIYT GEEVKRMCPN SKVSSLDGDR RTVSIEPAIK SDI // ID A0A162ARD2_DAUCA Unreviewed; 638 AA. AC A0A162ARD2; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE RecName: Full=Casein kinase II subunit beta {ECO:0000256|RuleBase:RU361268}; DE Short=CK II beta {ECO:0000256|RuleBase:RU361268}; GN ORFNames=DCAR_005590 {ECO:0000313|EMBL:KZN04753.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN04753.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN04753.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN04753.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Plays a complex role in regulating the basal catalytic CC activity of the alpha subunit. {ECO:0000256|RuleBase:RU361268}. CC -!- SUBUNIT: Tetramer of two alpha and two beta subunits. CC {ECO:0000256|RuleBase:RU361268}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the casein kinase 2 subunit beta family. CC {ECO:0000256|RuleBase:RU361268}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN04753.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN04753.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005956; C:protein kinase CK2 complex; IEA:UniProtKB-UniRule. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0019887; F:protein kinase regulator activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.1820.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016149; Casein_kin_II_reg-sub_a-hlx. DR InterPro; IPR000704; Casein_kinase_II_reg-sub. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR PANTHER; PTHR11740; PTHR11740; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF01214; CK_II_beta; 1. DR PRINTS; PR00472; CASNKINASEII. DR SMART; SM01019; B3; 1. DR SMART; SM01085; CK_II_beta; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF57798; SSF57798; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 638 AA; 70885 MW; C95DDC381DC5B261 CRC64; MAGGEACDEC KSKCLLLHQR KKDPSPLITT FYKVLYGGYD YWKYLCLPQK ISQTIPVLGA GKVYDLEDTN GQRWQVTLGN KDGHLAFNKG WDKFYADHGL REGYSLVFHF MVKSHFVVQI IDKTGLEKRM FPLENGKKRK RSEIDVNSNA VGECQNHSNK QGSVFPGVPD SEARIHGQPM SKNNSSSVKP GDGMYQHVAL GDSDIEQVFT INRDSGYKCE EGRSPILGFI NLEMRGVDPD GSSDKRTHPS NTSAACNAAA RILDENPVSA KVVSGEPPAK VTAPTFFSNS NVSLKKENVA EVGNDHLGDY QSGLGKQSAK VAAPTYCDNN NVYLKRENVA ELPAKATAPT FSNNNNLYLK RENMAEVGND RHGDHQSVLP TGNRAQSHSE CRIKSSTTSL NRVQIEEVTG SKKHSKKYPK FKERSDQIIG GDEKSNEIHK AVKAEPVDSY NDERLDASAL TFTVMVGSKE LLTDIAYACL VEESETDSED SDVSGSDGED TSWISWFCNL RGNEFFCEVD DDYIQDDFNL CGLSSQVPYY DYALDLILDV ESSHGDMFTE EQNELIESAA EMLYGLIHVR YILTTKGQAA MLEKYKNAEF GRCPRVYCCG QPCLPVGQSD IPRHCTLEFG PENRSIED // ID A0A162AX02_DAUCA Unreviewed; 940 AA. AC A0A162AX02; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_007870 {ECO:0000313|EMBL:KZN07033.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN07033.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN07033.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN07033.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN07033.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN07033.1; -; Genomic_DNA. DR RefSeq; XP_017235181.1; XM_017379692.1. DR GeneID; 108209014; -. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 807 891 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 535 578 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 940 AA; 104678 MW; 04056D94783D9613 CRC64; MRLSSVGFNQ QSPEGESRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDTHIPNYPS LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLNPQEQKEA FLPSDLGSAS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPVQELIGR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRASR PQAFMPSSVL SSDSMHLGLL AAAAHAASTN SRFTIFYNPR SSPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFNGMKDD GLGMNYPLAW IRGDSGAQGF QSLNFQGIGV SPWLHPRLDA SMLGTETADV YQAMAVAALQ DMRAVETSKQ TVPSLLQLQQ AQGGSSRSDS LLSNEMMRQS LPQPQYLQNL GENLSVAQTQ SHLLQQQNSF INQLQQQQQQ DHQQQQHYRQ QLQQQQQQQQ QQQQQHQQQQ QQQQQHQQQQ QKQEQQQQPH IRSQQQQFAD GRQVSGVVPL LSQFTSHTQS PSFQTISSMQ QSFSDSSTNP VPNSVVSPLH SLLGSFPQDD TSQLISFPRS SSLLTSSGWP PKRVAVDPIL SSGTRQGAMP PADHLAPLHS NITQCNVSLP PFPARDCSIE QDGSNDPQSH LLFGVNIDST SLLQNGISSL REVGSDGDST TIPFASNYMT TAGTDYSLNT MTPTNCIDES SFLQSPDDAG QANPSSRTFV KVYKSGSFGR SLDIAKFSSY NELRSELAHM FGLEGQLEDP LRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPQ EVQQMGKQGI ELLNSVPVQR LSSTSCDNYA SQQDSRTLNA GIASVGSLDY // ID A0A162B817_DAUCA Unreviewed; 306 AA. AC A0A162B817; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN11183.1}; GN ORFNames=DCAR_003839 {ECO:0000313|EMBL:KZN11183.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN11183.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN11183.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN11183.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN11183.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN11183.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34716 MW; B30F77DA65373A7E CRC64; MDPSFFKPLV GDFSRKLLIP PAFVERMEGK LGSELALKYE CERVYTVQVE KLEEGRFFFV NGWPQFVADH GLDYGDFVVF RLVQDSTFQV TVYDPSMCEK DCCDSHRNKN GDRTAGKVIK EEARTSLDQN TSLDSLSRXL PLSGSLPLPL PLSLALSLSI SYQMFHYQGS RVDLTEDDEE TDAKMEIDDE PKEATSNDDA PSFRLLLTEA NKIWIPLPLL FVRESGLADK EQIKLRDPDG KKWLVKVINE GKKAALTVGW TRLFVAHRLK RGDTCIFTYV RREGSSGIIQ VDMKRGRGRP PKKESS // ID A0A162B8M5_DAUCA Unreviewed; 716 AA. AC A0A162B8M5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_004039 {ECO:0000313|EMBL:KZN11383.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN11383.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN11383.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN11383.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN11383.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN11383.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 78677 MW; B640F4A862A2C5FC CRC64; MCGMIDLNTV NEDDADTTPS EFDSAPVKSP AVCLELWHAC AGPLISLPKK GSCVVYLPQG HLEYVVCDYG DDVASRLPPH VFCRVVDVKL HAEAATDEVF AQVSLIPDSQ IELNWKEGKS EVVVEDEDVE IAAKAMTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV CGDAVLFLRG GDGELRLGIR RAAQVKSGAK VAVAYNEHMN DIASVVNAVS MKSVFNLCYN PRSSSSDFVI PFSKFSKSLA NSFSPGIRFK MRIETEDATE RRCTGLIVGT GDVDPLRWPG SKWRCLMVRW DDMEATRHNR VSPWEIELSS SVPGASGLLS PSMKRSRIGF TTQPDFPISR ANVFVLLTDG TGISDFRESS RFQKVLQGQE ILGFHASFDG VDARKNHPPD PRGCFPGSMN WDSAVGNGVR SVMGSSEISY DGVNFSESLR LNKVLQGQEI LSKRPYGGCP TVNQMLEHND PRFIEGARAV SGGTEWPSVM QGYSTCMRPS APLVRKSPMS SVPVFQQPSN PDPKCGAVAS RGNLTSSSPY GRNRFEMESQ QNLASSGLLN SHKQLGSFNL PLETQASNMG SSNLVSSCKS SCRLFGFLLT EESPAISKES NPSRIQSAYV HKAPHHPRGD EQFNSKPSSM TKIVGGSCTK AKDLYNVRDM LLDIAM // ID A0A164T5R3_DAUCA Unreviewed; 529 AA. AC A0A164T5R3; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM87091.1}; GN ORFNames=DCAR_024225 {ECO:0000313|EMBL:KZM87091.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM87091.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM87091.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM87091.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM87091.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM87091.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 219 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 219 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 438 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 529 AA; 61261 MW; B2E067E75D14B3FB CRC64; MSSSSSRRIA SACAMGNLQM EKSTNDLSFV CNTNNSKLKK GILVLSNAMA RNVGKFLYGP VGLHLPDGAV WLARYNRELK IIEGLEELIK QYNVKNFHLL VFKYYGGTEF VLEIFNQYAV EICYSPRGDN LGGNVVCDND SSLHYETTMD VTEYEKDKMH ACFSLNAYTT FTAEYVLVIK DEHLIQTDWT MVLSRDACAE LDLDAKIEWL EFGFKKFMWR IDLKWEDGNL FFDRQWNTFA KAGKLAVGDK LMLMRDKHWQ IFEVAVFERD ACALFNKFVD KQKGQPKWFK IMNWESAVIG DVEVPFLFAK QYSHKLKEDV SLFLPDGGKF HAYFSIEGNL LYGLKDLMRT YAVKEQYVMF FEFVGLSSFY VTIYNEEGED LFNKLPDKLM LRTLLKGIEE TEKLDGLNYG TAGHCNADDC TNEHKRKKFR ADLLTEFEVD LLKSHVDQNG HGVFLPRYLT HIFKKWNKST LINLVMKGKT WRVAVLRRNK TCRFGVGWNS FTLDNKLRIG QKLVFSFVED NTFQVNIVS // ID A0A164T8Z5_DAUCA Unreviewed; 321 AA. AC A0A164T8Z5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM87217.1}; GN ORFNames=DCAR_024351 {ECO:0000313|EMBL:KZM87217.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM87217.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM87217.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM87217.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM87217.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM87217.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 268 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 268 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 37225 MW; 1E1297976AD1EB95 CRC64; MTIEDFQGLK FFKVAMPSTF MTGEMTFPRR FSNYLNQIPS RGKFVLRDGH EWEITICKER KSVLGLKPIL KFFECNKGAF FFMQYKGGGQ FMCDVFPLIR GSPQETVEVD FQGRYIMKIV TSNGHNFDDV VLPPSVLAQF KSHIPNTLRL RLKNGVEYVA KYEKEKRAIS GFKQLQQSIE IEFGDTIVLS CDIYPTYHVT LFGTDGIEKN PASCEMNEDL AVKTFEITVR PSHLQKYSQG VLVPAKYQNI TASWQAFQFI EVTDGLNKWK IEVKKRNNMT ELHRGWEVLW KDMKLKAGDT CVFESLGSNF KFNLRVFYRI R // ID A0A164TNW8_DAUCA Unreviewed; 426 AA. AC A0A164TNW8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM87787.1}; GN ORFNames=DCAR_024888 {ECO:0000313|EMBL:KZM87787.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM87787.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM87787.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM87787.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM87787.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM87787.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 339 426 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 339 426 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 426 AA; 46842 MW; 64F7152F5F909581 CRC64; MASLSCSLPK LCFNSNCNQL LHHNSRRGWR RRTGDFADLC DRCATAFEEG NFCESFHLNA SGWRSCETCG KKIHCGCIVS SHMFVLLDAG GIECITCTNK SHVLTPNPAW PPPSLILPVL PERVKDLSVT NWSSIAASGP KPCRQAPTFF DQDLHPKMPV EVDISTGINR HIGSKKLTNS PIEKRNNLDA SGRLVNGSLK HGASLLLENG TSVSKCDEQP SAYGNDKPLS AVSKDETSSP HIHLAHNHAS KSKTGDHFKV SVSYAQRSTP PTAAVKNFGS PNGVGSSGES RTCNERPQGR NQLLPRYWPK ITDKELQQMS GEYPNFLYVS TNCVITPLFE KTLTASDAGK IGRLVLPKKC AEVYLPSISN SEGIPLLVQD LKGQEWVFQF RFWPNNNSRM YVLEGVIPYI QSMQLRAGDT GKTSIL // ID A0A164TZ04_DAUCA Unreviewed; 666 AA. AC A0A164TZ04; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_025262 {ECO:0000313|EMBL:KZM88187.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM88187.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM88187.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM88187.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM88187.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM88187.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 632 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 103 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 666 AA; 75138 MW; E674EEA3EACD8F8D CRC64; MIFMQSYGSH VQALWLRFPV GMRECITSLR LQASTNQELD QHIPKFNLPS KILCRVVNVQ LLAELDTDEV YAQITLHPEV EQAEPTSPDP CIADPPKPPI HSFVKILTAS DTSTHGGFSI FRKHANECLP PLDVTQATPT QDLVAKDLHG FEWRFKHVFR GQPRRHLLTT GWSTFVSSKR LIAGDSFVFL RDDGGEMRVG IHRLAQHQSP MPPSVISSQN MHLGVLATAS HAITTRTLFV VYYKPRTSQF IVRLNKYMEA VAYGFSLGMR FKMKFEGEDS PERRFSGTIV GVENLSPQWS DSKWRSLKIQ WDEPASIHRP LRVSAWDIEP FVASKSSDLA LAMKIKRPRP VGNHLSDTTA WYAATPFWYA GSNTTVEQSS LGGTTEFEYI AKQVVWPPKK KEQHDNFINH FSRGLTDESW KDSVNLFRES AQDKPYVTTP PVMPEYDSPA SSRAHNGLVH DQVEQVRRTE TSASCRLFGI DLRNSNSIQS PTKKVTDSFI ATDGGLQASS DTLLEVDRAR NLDLRKVKEQ VLAEAPKKET DSKHGSNTSK RTRTKVQMQG IAVGRAVDLA LVEGYDDLIT ELERMFEIKG ELKERKNWQV VYTDREGDMM LVGDDPWLEF CGIAKKIFIY TTEEVKKMSG NCKLPGSASD GEEKIVSIES ETKCEV // ID A0A164U9M6_DAUCA Unreviewed; 827 AA. AC A0A164U9M6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM88604.1}; GN ORFNames=DCAR_025679 {ECO:0000313|EMBL:KZM88604.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM88604.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM88604.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM88604.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM88604.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM88604.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.40.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR004146; DC1. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001965; Znf_PHD. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 2. DR Pfam; PF03107; C1_2; 4. DR SMART; SM01019; B3; 2. DR SMART; SM00249; PHD; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|SAAS:SAAS00592111}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; Zinc {ECO:0000256|SAAS:SAAS00592111}; KW Zinc-finger {ECO:0000256|SAAS:SAAS00592111}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 827 AA; 95169 MW; 5BB2F6958A790BDD CRC64; MKLASGSIHP AKAQRFFKII VSEISPQSKL MIPKEFVKNH EEELRGRVHL KAPGSAAWPV DVVRTQGEVW LQNGWPEFAK FYSLSFGSLL VFEYLEHFNI RVRVFDTSAT EIDYSLTCDP NLDDGESVPR VRKRDSSRRC ELVRACKKTR ASTEETFHNG FKLKQEKANG DRGSAKEEIE RAVNLAASFK SEKPFFIIHM RPTYVSGVSV EVRKSFLETF RKWKNKGKGQ VIFQIGRRSW LVGYTFSAGD RCTLTAGWKT FRTDNSLKVD DVCVFELINP STKLFKVIIF QAKSRPDEYI CDVCSRLVKF AYACEECTVD VCVFCGLEQR VLCHEGHQQH KLTLMNREAL FKCDACGEED KDSSYVCTTC EFWIHKTCAL SPYIIPTQAY HHHPLFLIYS IPQMHRQFER ECNICHEVVY NINWMYYCHK CTYFVHMRCA MSSDTVPIVT DTEAADIDDE TVLLQFPLPH EESLFDLIIT QCGKFQVDLQ GEGESSTPIP DNPHIIEGHW SHENHQLEQL QFATSNDDND DNDDDRRVMI CNGCIQPITD THPSYYACVQ CGFFLHSFCA TKLPPELPRG ASSFHPSHSL VLYMSDQFYG YVDCEVCGYC TNGFYYKCED CDIKIDIRCA FLPKRIKHRS HKRHSLVQRP FSNSICSVSN LKITNGVEYA CETCSSFQIH IDCVIYPSRM NHRYDLHAVT LREPPFFYEG VFYCEICEEQ VNNQRLLYHC DECDHSFHHY CLRWYESFKF GGIINRIIQE QPHALALVLK RTARDKSPLY ICGICEEGYN FLFFFECGGC GFLVCCNCFG EITDSTNSTS GSGSVSC // ID A0A164U9N7_DAUCA Unreviewed; 261 AA. AC A0A164U9N7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM88605.1}; GN ORFNames=DCAR_025680 {ECO:0000313|EMBL:KZM88605.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM88605.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM88605.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM88605.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM88605.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM88605.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 162 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 162 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 29923 MW; 1700D3883A079BB9 CRC64; MIPKEFVKNH KEKLRGRVHL KATGSAPWPV DVVRTKGEVW LQNGWPEFAT FYSLSFGSVL VFESFKKSKF RVRVFDQSAT EINYPLNRDL SLDDGESVPQ VRKREAEIGG SSKKTRSSTE EAFHDELNLK QEEANGDGGS ASKEEIERVV NLAAAFESEN PFFVINIRPS YVIRSGVDVR RSFLETYTKW EKRGQVIFRV GNETWPIGYT LCGERCTLNT NWKKFLKDNS LEVDDVCVFE LIDPARKLFN VIVYQPKREA A // ID A0A164UB47_DAUCA Unreviewed; 694 AA. AC A0A164UB47; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM88654.1}; GN ORFNames=DCAR_025729 {ECO:0000313|EMBL:KZM88654.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM88654.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM88654.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM88654.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM88654.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000007; KZM88654.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 7. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR006461; PLAC_motif_containing. DR Pfam; PF02362; B3; 1. DR Pfam; PF04749; PLAC8; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR TIGRFAMs; TIGR01571; A_thal_Cys_rich; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 604 623 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 148 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 148 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 464 505 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 694 AA; 77468 MW; B59306D60B21846E CRC64; MKLKVVSRGV VSVSLPLPNP GPDNTNVTNN DNNNIGCDEE FIKKEAPDNE QGLVLALFTP DLDKSLPSSS TTPPCQGKAI VKSRDLNDLR LTLPAKRKTK PSSKSKLALS DMPIRIVREK ATPPQFKSAT VIRAEEMQAG LGSEFPSFVK LLVRSHVSSC FWMGLPMPFC KFHLPNRDVV LILEDENGDR AELKYIAEKT GLSAGWRKFA VGHKLLEGDV LLFHLVEPLK FKVYVVRQNE LTDVDGALSL LNLDVKTKQP QPEGGSFSRL KTLLIRKRKR PSASALIQKK NKKMLVSRSV RDLGQLREQS GNDSEEFGSE VLEGSKLSKT LVPFKDVKSF EDFHIVVNDL CIDSELPEHI RLKYYELCCK KNAFLHSRFL PGLYSKLAAG IIGETVNIAD AIKSCKLTTS WDEFAVWEKS LKSFELLGMK VGFIRHRMHT LRGLAFETQG ASDFKNYLGA ISKRIHAEDE IRNLEAKLVE LKAACENYDA DIEMLRSKAE KHESEFQEES ITAKDMHPPN DYTKYAAPGY PSAPMSIPPA QLYPSFGVHV PTPTPNTLGK WSTNLCHCFD DPVNCLVTCI CPCVTFGQIA EIITQGETSC LASGGIYGVL LGVTGFACLY SCFYRSRMRG QYELEEAPCE DCVLHLCCET CALCQEYREL KNRGFDMGIG WEANMNRQQG RATTVAPFQG TMRR // ID A0A164V3H6_DAUCA Unreviewed; 283 AA. AC A0A164V3H6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM89761.1}; GN ORFNames=DCAR_022876 {ECO:0000313|EMBL:KZM89761.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM89761.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM89761.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM89761.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM89761.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM89761.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 86 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 86 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32610 MW; EAE16A9D7986E4C8 CRC64; MQLWCYQLIP SVFMMNLKGK IANAVTLKDL SGRCWQADIK QTKEGFFLYN GWERFVSDKS VELGSFFVLR YVESSSSFVV KIFGPNGIKT EDLARVKIED EGAEMQTDSM QNHRETIPAR HEQSPEGIRQ SMSPSRGSRI GKKQKFVQSA EHACTKNPCF PANYRPSTPY TLYVPKPLLD QHGITLNKSV EMQDHNGKVW QLSITHLRDG RTVITQGWRD FLEQYNLNTQ KDELELEIIR GRGSDCKDLK VRIIKRVTPR GRGRPREPKD IRPRGPGRPR KMK // ID A0A164VCF1_DAUCA Unreviewed; 231 AA. AC A0A164VCF1; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM90127.1}; GN ORFNames=DCAR_022508 {ECO:0000313|EMBL:KZM90127.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM90127.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM90127.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM90127.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM90127.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM90127.1; -; Genomic_DNA. DR RefSeq; XP_017256383.1; XM_017400894.1. DR GeneID; 108225944; -. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 220 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 231 AA; 26648 MW; FB4D1994B977C999 CRC64; MNMKIDTMKS PNEIPEESRK RRLEDLDAGS LRLSTPSCYT NCDAAVFEKP ENSTFDSALN IRIAKNISGF RSYTHEEEAR ERFLGVSTKL KLWIDGSEGN DPWKIKKTLK HSDCDRLYRL TLCKDMVQNH IIKVWEEAGK VDEIEKVVSD EGVAVKVWDY EREREYELKL KKQSSSKSYV VSGAWRKEFV KERRLKKGDI IGLYWSTSKS RFVFSVLARA PPVAVSERGG E // ID A0A164VDX2_DAUCA Unreviewed; 939 AA. AC A0A164VDX2; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_022437 {ECO:0000313|EMBL:KZM90198.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM90198.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM90198.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM90198.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM90198.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM90198.1; -; Genomic_DNA. DR RefSeq; XP_017257770.1; XM_017402281.1. DR GeneID; 108227235; -. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 827 911 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 939 AA; 104025 MW; 237A3F87C100401B CRC64; MSCVEDAHKP AGLINGAHTL LDEIRLLKEM QDHPGVKKPI SSELWHACAG PLVSLPQVGS LVYYFPQGHS EQVAVSTNRT ATSHIPNYPN LPSQLLCQVH NVTLHADKET DEIYAQMSLQ PVNSEKDVFP IPDLGLKTSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK LFPQLDFSMQ PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLKAGDAV LFIRDEKSQL LLGLRRAKRQ QAALPSSVLS ADSMHIGVLA AAAHAAANRT PFTIFYNPRA CPSEFVIPLA KYRKSVYGTQ LSVGMRFGMM FETEDSSKRR YMGTIVSISD LDAIRWPSSK WRNLQVEWDE PMCGDKQNRV SPWEIETPES LFIFPTLTSS LKRPFQSGFL GTQNEWEMLN RPIMRVPEPI NPDFSNLPIS GQWSEQLIKM LMKPQAAGYS GSLASAAHDS ANNGVPSQRT KFLTQATVDQ KTQATEHMLT QAENCAQFHR IQPEGIDSNS LQSRLQERLQ SQNVIETKAP HISDEMTKPE IAISPEQLHR FNSERQCSEN IAEIRQSNPN ILVNEPTHVS ESHNSAQLQS NSWLMQSQFN SNPFQPSQIE AATLNALLPN LDNSEWISNS SNSQNISGCL RSPGSAGLFS ETTNPTLPSS SHEMWDQQIN DSKPLSETSQ FQSSCPQDLC KAYSISSTYN LKNISEESNT QSDLYSCLNF ETSNGGSTVL DPSVSVLDPS VSSTAIDEFC SFKSGHFQNP SAYLVNNFGS NQDLQSQITS ASLAESQAFS LQEFPDSSGG ASSSNGEFDE SSLLQNSSWQ QVAPRVRTYT KIQKAGSVGR SIDVSSFKNY DELCCEIERM FGLGGLLSDT RGSGWKLVYV DYENDVLLVG DDPWEEFVGC VRCIRILSPS EVQQMGEEGM QYLNSTAAQG INGSEGGHA // ID A0A164VF79_DAUCA Unreviewed; 1114 AA. AC A0A164VF79; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM90256.1}; GN ORFNames=DCAR_022379 {ECO:0000313|EMBL:KZM90256.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM90256.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM90256.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM90256.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM90256.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM90256.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 466 560 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 614 708 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 753 847 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 466 560 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 614 708 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 753 847 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1114 AA; 129047 MW; A0B82A6FBA186CE7 CRC64; MGRRPPERKP AFSKILVKDF SKKLMIPSKF VSLHRGTLAR KCVLRPTGTQ DAWRVKTKQI NDSLYFKKGW KKFARHYSLG FGDLLVFRYA QDCEFYVDMF DQSCCLKELA VTSHNVKSRK HSHLEEANPG EKEALDKAEK LMSSSKFPAF LKIMQWAYVR PGGYLPLTTD FARKYFKDST REVKIEVSGK TWTAGVRKDC ATYRLTRCWS YLVTEQALKV GDVCAFELIN TEDYTLKLTI FSSTRKNKIC KTKARPFSSF EARSCQAPKK RSSHALEAQS RKAIKAANRF SSLSKYPSSP YVMRHTYLRA RYLIIPPKFA RLHLGTLARK CILRPTGTQD AWLVRTKQIN DSLYFKRGWK KFAQHYSLGF GDLLVFRYKK DCEFHVDVFD KSCCLKELAV KSPHVGSQMD TTSKFPRKKK KLQTKARPGK ALEAKYPSCP CVMNTSYLHG RYLEYKRMGR SPPPRKPSFM KILVTDFSKK LMIPPQFVRL YRETLARKCI LRPTGTRDSW CVRTKWIKDS LYFKKGWKKF ARHHSLGYGD LLIFRYAKDC KFYVDMFDKS CCFKEPVNSQ NVGSQRDTTP ILPGQEAKVD LETSALDAAL DAEEFMAGSE FPAFNRIVRP AYLKANGYMP IDPNFGRWYL EDSIRDVKID VSGKIWTVGV IEHGSSGRLS RCWSSLAKEH ALKAVHGSSI LLHSDNSPSF TGSVECVEDR ENCQTKARSG KALEARSSQA LEEDSSQVIE AAYEFASQSK HPSYPCVMSF NYIRRGNLLI PSKFVRLHCG TLPRKYMIRP TGTRDSWGVR TKQINNLLYF KKGWKKFARH HLLGFGDLLV FRYAQDCEFH VDIFDKSCCH KDPVTSQDIE SRRDTTLILP RENKNIQSKT RSGQALETHS SQALEAKSNE EFEARVNQAR ETAYKFSSLS KYPSYSCVMQ YSYVRQKFLF ERWDANQKSR MKAQSDLQKM QRKNIRGLCE KFAVTKLEFK FVIEAWQQIV KCRRTLKWSY VYGYFIPEDE PAKTALFEYL QGEAEAGLER HHHCAEKELF MVLNDVNATA DQFHSFRVKL EELTRVTRTY FANLVTALEN NLYESEIRGP PKEKTRKIVK KFTKQRGERR KVQK // ID A0A164VWN7_DAUCA Unreviewed; 369 AA. AC A0A164VWN7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM90968.1}; GN ORFNames=DCAR_021667 {ECO:0000313|EMBL:KZM90968.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM90968.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM90968.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM90968.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM90968.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM90968.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 275 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 275 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 369 AA; 41725 MW; F01F03EE9CDFFD66 CRC64; MTSSAISQGV FKDFRTEPQG QYNVEYFYSI SFGYLLVFEY KGDSKFQVLI FDPSASEIDY SLARKDKPGS VKSAQVKVRQ IDIDDSSSSD DLIRPCKKTK AEPSSEASPK LGQEKAKEAS KVDKDRALAV ANAFKSKNVS FIHVMKESHM VGGGWPNVYI PKSFKEAYTW QSNQKLILVV EGRSWVVFCN MNSKCNQCRI SRGWTIFAGD NSLRVGDVCV FELISSSSKK FKVFISRASK ETNCEENERL PRVRSEADKA RVLQSLKAYK PNRPFFSVEV HRSYLYGGSM TVPLDFIESN ITKDSCRVVL QLPDGRVWSV KCYINKKCAK FSAGWKNFAT ENNLAAGDFC VFELVKERLL NVVIFRVES // ID A0A164WKJ8_DAUCA Unreviewed; 337 AA. AC A0A164WKJ8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM91903.1}; GN ORFNames=DCAR_020732 {ECO:0000313|EMBL:KZM91903.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM91903.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM91903.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM91903.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM91903.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM91903.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 37631 MW; 58D6D829FBD34636 CRC64; MSINQELPSD TLWWTQQQHH TPIMEQTPAN THFHQRQNTH TTPLSFNLNQ ETETEEMDRD QEESVEQVVY VQKDSMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLAANGG GESVEKGLLL SFEDESGKTW RFRYSYWNSS QSYVLTKGWS RFVKEKRLDA GDVVVFERSR NESDRFFVGW RRRNATPPQS ENTVAQSGSS GGAGWTRVYY SGYPYPTVVS NGQAVANYQP QCLHAPGLAV LYIRYSSRIP GGGGLGGMQN QTTAGGGNSK TVRLFGVNLE CQSDEPPGVG ADGSNQSEDQ AQTQVHHQHY NYSNGGGAAH VSKHHSSLHM VSHCSFD // ID A0A164WS30_DAUCA Unreviewed; 1090 AA. AC A0A164WS30; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_020464 {ECO:0000313|EMBL:KZM92171.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM92171.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM92171.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM92171.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM92171.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000006; KZM92171.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1003 1090 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1090 AA; 121011 MW; 676CF3A90B197038 CRC64; MKTPANAAGA SMANPSEGAE KKSIINQELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA SMKKDVDAQI PNYPNLPSKL LCLLHNVTLH ADPETDEVYA QMTLQPVPSF DKDSLLRSDL SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPPNL SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSSQISLG MRFRMMFETE ESGTRRYMGT ITGISDLDSV RWKNSQWRNL QVGWDESTAG ERRNRVSVWD IEPVTAPFFI CPSPPFFRSK RPRQPGMPDD ETSDLDNIFR RTMPWLGDDF GMKDPQALPG LSLVQWMNMQ QNSSQGNSMQ PNYMNSLPGS VLQNFTGTDL SRQLGFQTPQ IPLQNNIQFN AQRTAQQTQQ LDQLQKLAPS SLNSLNSIMQ SQQQQQQQQM TDITQQQRQN CSNQMLPATQ VQAQTMQSQS LAQNQMLQQQ PSIQNHQQHR SVSQSLQQQP QHQQQVATQT QQQNMVSSQQ PDQVNQQLHM SENQIQMQLL QKLHQQQQSL LAQHSGLQHP SQLSQLQDQQ RQMLDSSQSY SRSTSTSQMQ EMPQMVTSSL PQAHVIPQEM PRNNSQTNFG FTHPSQQSKL QQQSGLLPEF SGQLGHNQPP IVNQLSTGGS SLLTGAAVGG QSGITDDVPS CSTSPSTNNS PNLITSTLNN RARGSTVGDE LVQSSAMLLN YGGLETFSAH ANLAKDLHQK PDIKASLNMS KSPSQGFLAP QTFLNAAGTQ MDYLDSSSSA TSGRISQNDA HLQNSNTLCF NSQTMPFRDS SHDGEVHVDP RNNIPYEANI ASHLNMSMIS DTMIGKELTA SGKDFSNNLS SDGGMLSNYE NPKEAQPELS TSIVSQSFGV PDMAFNSIDS TINDSSFLNS GAWAPAPQFQ RMRTYTKVYK RGAVGRSIDI ARYSGYEELK RDLARRFGIE GQLEDRHRIG WKLVYVDLEN DVLLVGDDPW ETGYILLSHP GLSLKFGSKT // ID A0A164Y5R8_DAUCA Unreviewed; 279 AA. AC A0A164Y5R8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM94024.1}; GN ORFNames=DCAR_017269 {ECO:0000313|EMBL:KZM94024.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM94024.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM94024.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM94024.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM94024.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM94024.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 221 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 221 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 31742 MW; 809C25874658E5F0 CRC64; MGHRLQPHFS LKFRNGYELL VVLNAEHSTV CGLSTLYDDF ELRGGEMLVF EFDGVSGFIV HVIGNDNSEI EYPNLVHHMQ RKQPRVVSLR NDGLKFVNFV KEENPICDEL VPPVSFKRAC GLILGYQNFG FSNEKQIQGG YANKIYVFDD NFVEVLFAGT PLSPGLNLHN PSVGGRIEIT VQPFHMYQYA YGVDIPSEYG GVTIFWCQKD YVYIYTAKNA WKLQVKKRRG NSNRTALKDG WLEFRDDMGL SVGDVLVLEY AKYCSHHFVV HVIKNGGDN // ID A0A164YAZ9_DAUCA Unreviewed; 1184 AA. AC A0A164YAZ9; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM94241.1}; GN ORFNames=DCAR_017484 {ECO:0000313|EMBL:KZM94241.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM94241.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM94241.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM94241.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM94241.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM94241.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 513 565 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1084 1182 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 290 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 513 565 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1084 1182 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1184 AA; 135982 MW; 947583F70F6AE204 CRC64; MKMASSNRFP QFIKYICCDE SSSDEIRVPQ KFTNEHSKRL SENWILSLRN GYKIPVRYDS TKSTLVGVRD LLVDFGVMGG EVLVFEQVDK GNFKLYIIGV DGCEMKYPVI MHASQQTAAV EVQSANGELT FLKFVSFEKP KFDKIDVPLS FAIEFATRMP SSVKYVLNNA AQIEGSYDEF KRTLGCLRKV RKVLGLRTFT AFDCLLFKYD GRRNFKLSFF DGRNVEILLD TVVMRSGNLC FSLRCPSHFS VQVMPCHMMH YSHGVDVSTD FFRTSVFWKK DTITAYNGVE SWKLEVRKRK FGKRATINRG WIEFMDDLGL NVGDKCWFKW IDESYHCFRV EVVRAVPILP KDFCLEVSAN VPEKILLHVP PGLVWSAIYS KEMNCIQGLH NFMIYYSVKP YYLIALEYMG GLDFNMQIYN PYGVEINYIV RSPCKSCYAD EFFFNFSDIE VDRLGGIMSC NVYSTGLVVY DLVITKKHLT NKEYTKVLKR SACKTLGIRQ SMEFVDLSFK DFSWTVKLKW ENGKAYMDRK WYDFAKAGNL NEGDICAFHL TREPGKYRIC IYETVLLSRC NEKGFGHRTG VHNWYKVVDD IFLSGGQMEI PRVYTEITCG GMKKIVKLIM ADGKSVFGRF FAGKNLIYGL ENLVNSYSIE LNDILVFTYA SDSTFSVSCF KYSGIEYHHN SEELDALIEE AQETIMLSDS SDASDNNVVL DHAPQEVEEM VMEVSDEEQH NNSFLVTLKK SHVDKKVHGV RFSLKFAAWV VEINNNVVAK EVQQIIIASL GLILHLQSEV KSLSRGFKDY AVMAFHDNEV PRIFKVALKD TCLSGVMALL EYYGCSTGAF LLMEYNGGGR FMCDIFPAYE GCERWTDECD LLGKYIMKIV VYQGDDFDEL FLSDRVLEKF EKALPNIVRL RIKNGKEYVA KYRRNENKLT GFKQLQDEIE IKFGDVVILS CCGDAMYTVS VFGPDGMEKI PRSADIVKGD VVYKFEICVK PSHLQQYSQG VEPPISFKRA CPMLRGFQEF VFSNGKKIVG CYNHGTGRFH GFRQFASILG IKNFAKFNLV LINYEEKWEN TVSFFDDNFV EVFFSGTPLS TGYNLHNPID IPAEYVQLTT FWRKTEYINV YSGDTVWKLQ VKSRRKNSRR NTINDGWIKF RDDLGLAEGD VVVLECADYS SRYFAVRVIK NITP // ID A0A164YBB0_DAUCA Unreviewed; 938 AA. AC A0A164YBB0; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_017496 {ECO:0000313|EMBL:KZM94253.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM94253.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM94253.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM94253.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM94253.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM94253.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 176 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 176 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 938 AA; 103724 MW; 7E2B411DCB30117B CRC64; MGSVEERAKS AGLISGAHSI IEDIKVLKEM HQDHSGHKKH ISSELWHACA GPLVTLPQVG SLVYYFPQGH SEQTARPAVA APWSYSGVVE SEKEIIIWCT FMVAVSTNRT ATSQIPNYPN LPSQLLCQVH NVTMHADKET DEIYAQMSLQ PVNSEKDVYP VPDFGIKGSK HPGEFFCKTL TASDTSTHGG FSVPRRAAEK LFPQLDYSMQ PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVS AKKLAAGDSV LFIRDEKSQL LLGVRRASRQ QKALPSSVLS ADSMHIGILA AAAHAAANGS QFTVFYNPRA CPSEFVVPLA KYRKSVYSTL MSKGTRFGMM FETEDSGKRR YMGTIVGISD LDPVRWPGSK WRNLQVEWDE PVSRDKQNRV SPWETETLES LFIFPSLTSG LKRPAQSAFW GSQNEWEEMM HRPFVRGNDN LNAEFPNPVM SSVWSEQLIK TLLKPQNSNC PGSIAHVQQD SSANGFNLQG AKTWLQGMVN QKAPPIASEH KHTQTEDPSQ CQRINPISAE PNLLQSDMPL KLEPQNVCGN QAQQRSESGL TKGEPEFASG QLSQYTYSGQ CNEEKQVSRA TNPQNVGNSV LPINQSHDSP QFQSSPWLIQ AHMDPIQSSQ ADASNLSSLI PYPDANDWNS SPFNCQPVAG FIKPPGPGLL TDATDPVLPS MGHEVWDHRM SNIESLAETR LYDMLPQEDS CKRHCSTNSF GLKDISDESN KPSEFYHCLN FENSNGGSTV VDPSVSSTAI DDFCSLKDGE LQNQSDYLVS NFSSCQDMQS QIMSASLAES HVFSLQEFPD SSGGASSSNT EFTDSGLLPN ASWQQVAPRV RTYTKIQKAG SVGRSIDVSS FRNYDELCSE IERMFGLEGL LNDSKGSGWK LVEFVGCVRS IRILSPSEVQ QMGEEGMQLL NSAAASLL // ID A0A164Z9A8_DAUCA Unreviewed; 704 AA. AC A0A164Z9A8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_018803 {ECO:0000313|EMBL:KZM95561.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM95561.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM95561.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM95561.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM95561.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM95561.1; -; Genomic_DNA. DR RefSeq; XP_017253294.1; XM_017397805.1. DR GeneID; 108223505; -. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 592 672 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 704 AA; 78393 MW; 9C128C2CC6DF8882 CRC64; MKEVEKGLDS QLWHACAGGM VQMPPVNSKI FYFPQGHAEH TLSHVSFGTL PRIPALILCR VAAIKFMADT ETDEVYAAIR LIPIGQNEFD YNENNGVMES NGIESVEKSN SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVVARDVHGE IWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFMR TENGDLCVGI RRAKRGSLGS PETPTGWTSA SGNCPSPYGG FSVYLMEDEN KRMRSSSNGN GNSSGGIKGK GKVRPESVIE AATLAMKGQP FEVVYYPSAG TPEFCVRASS LSAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPILWPNSPW RLLQVTWDEP ELLQNVKSVS PWLVELVSNM PVINMSPFSP PRKKSRLPHY PDFLHDDQFP VSSFTGNPLR PSSPFYYLSD SITAGIQGAR QAQFGTPLSG LQVSNKVQMG LFPNSTKQLN PQSKISNGTR PSSTHGTETV SCLLTMGHSN QNLEKTDTKK APIFILFGQP ILTEQQISHD CSRDSVSQVS HGESPEKRKR PSHDNMDLSE KLTDSRFLWN QGFRKTEPEL ETGHCKVFLE SEDVGRTLDL SVLESYEQLH ERLANMFRIE RSVAMTRVLY QDATGSVKQI GNEPFSEFRR TAKRLTILMD SGLNTVGRIW NKIMPNADRR LDSSSQTGPL SIFA // ID A0A164Z9W3_DAUCA Unreviewed; 539 AA. AC A0A164Z9W3; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_018826 {ECO:0000313|EMBL:KZM95584.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM95584.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM95584.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM95584.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM95584.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM95584.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 539 AA; 60159 MW; 69FD4933F06159E7 CRC64; MDIDLNHVVS EVEEAAVCCL SSLTSLSSST ISTTMTDGGA AAAPMFMELW HACAGPLITL PKRGDLVVYF PQGHLEQAAS DLSFPHIEAS NFGLSPQIFC KIMDVQLLAN KDNDEVYTQL TLLQVPEPEF PATNSDEKQN EYLGLDNEER GATPTKTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFAP LDYTQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WTNFVSQKNL VSGDAVLFLR GENGELRLGI RRTVRPRNEL PDSVLGNQKS YHTVLSSVAN AISTNSPFHV FYNPRASHAK FVVSYQDYVK SIASQIPIGA RFKKKFVKDD SSERRFGGVV YGIQDLDPYK WPNSKWRCLL LSAWGKAIGY DVLDMHQRSK TNFYPLASEG TRNIYFPHND AHKAVDNYNM GAYTNYANEN VLLNPYCHQT GVTNHEAEKL NSSKEPRSEC IISSSPKYKA NSKIEKDGSL QSTVTDCKLF GFSLTGETST ANSQFSCKRI CTKIHIYTQE EVAKMMGGMI SDDTPEALQ // ID A0A164ZGA1_DAUCA Unreviewed; 382 AA. AC A0A164ZGA1; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM95885.1}; GN ORFNames=DCAR_019127 {ECO:0000313|EMBL:KZM95885.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM95885.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM95885.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM95885.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM95885.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM95885.1; -; Genomic_DNA. DR RefSeq; XP_017251713.1; XM_017396224.1. DR GeneID; 108222305; -. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 304 352 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 382 AA; 44056 MW; 3412EF030FDF933B CRC64; MERAREIQAN LPSRFPSFVK YMLRSHVTGG FWLGLPKNFT CNHLPEKNDI VVLVDETGVE HETNYLWEKN GLSGGWRKFS LDHQLREGDV LIFHLIDECK FKVYIVRVKS EALIETDIDL SLVNLGARAT EMVGDYQERD PKITVLAREE HLEQYPEKDM VALLNDEDAA ENYFEMDVDD YDSGIRFSQP VIDFKDVKTF SHFNIIVYGF SIDHRISQHL RVKYYELCCS QKSYLHDQLK DGLNLQLVVG VISETISIAD AIRSSMPTSS ENLISWDKIL EGFEILGMKV GFLRARINKL VTISSDAKDA LERKILEKVN AEEELRALIL EKVKAEKEVK ALQIKLIDVK KVIANSDHKI EYMKKRAERL EAVFLQESKA PW // ID A0A164ZPN9_DAUCA Unreviewed; 571 AA. AC A0A164ZPN9; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM96217.1}; GN ORFNames=DCAR_019459 {ECO:0000313|EMBL:KZM96217.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM96217.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM96217.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM96217.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM96217.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000005; KZM96217.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0050662; F:coenzyme binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001509; Epimerase_deHydtase. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF01370; Epimerase; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF51735; SSF51735; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 464 555 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 464 555 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 571 AA; 63168 MW; 3B693C8E2067C48F CRC64; MKKMKVLVTG ASGYLGGRLC HALLAQGHSV RAFVRPTSDV SSLPLDENIE FSYGDVTDYS SLLVAASGCQ IIFHSAAIVE PWHPDPSIFI AVNVGGLKNV LKAFKETGTI EKIIYTSSFF ALGSTDGYVA DESQIHSGNY FCTEYEKSKV IADKMALDAA SEGVPIIPLY PGLIYGPGKV TTGNIVARLI IERFNWRLPG YIGQGADKVS FSHVDDVVQG HLAALNKGRP GERYLLTGEN ASFMQVFDIC ATISGTGKPR FSIPLLVIEA YGWLSVFASK IMGTLPIISP PTVNVVRHQW AYSCDKAEKE LDYKPRSLKE ASSAVKMVMP KAKNESKSAA SGSAYEELRR KRMEENRKKL EELKLPRLSL ALKPSPKPPK SSPMKRVKKT EVVEVRRSGR FVNKPAPVYR EVVTYERPDL PRRYFKYSRK DLANRVYASD EARAAATYKA EELEVSLGND YPTFVKPMLQ SHTTGGFWLG LPNSWCRTHL PKNDATITLI DEEGEECLTV YLARKAGLSG GWRGFSIDHG LVDGDALVFQ LIRPLTFKVY IIRVNAYEKG DNMEALDAAD I // ID A0A164ZZY8_DAUCA Unreviewed; 196 AA. AC A0A164ZZY8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 12-APR-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM96691.1}; GN ORFNames=DCAR_015947 {ECO:0000313|EMBL:KZM96691.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM96691.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM96691.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM96691.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM96691.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM96691.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 144 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 196 AA; 21994 MW; FA5DFC8DFB22CCCB CRC64; MIGDFSCAAD SLGPWDVNYK GLLADEPMCC VFRPGAKANI VISLDIKTET EEGNAGGCWA LFAKAFCFVV NQFEETYKKW KDSDQVLQVA GKSRPVNCNM NGNLFRLSSM WDRFAQDNLL FVGDVCVFEL INNSTKLLQA EIFSAAKEAN GFGAKVCKEI YYQNTVAMLP FEYRMEESGW LSAMFTTPVF ILYDLL // ID A0A165A1H8_DAUCA Unreviewed; 313 AA. AC A0A165A1H8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM96757.1}; GN ORFNames=DCAR_015881 {ECO:0000313|EMBL:KZM96757.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM96757.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM96757.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM96757.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM96757.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM96757.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 216 311 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 216 311 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 35936 MW; 67488B8F596B0B2B CRC64; MIPEKFARKY RKYLNVRVCL KASKGEIWPI DLVGYGGELW LQNGWPEFAS CYSLRFGHFL IFKYQGNSHF DVFIYDKSGI EIDYPFVSTL TVRDEQDSFN QARSTQVGKR TMIDINELKA CKKTRANSAC IEPCHIGDCW MRKLQHQKIE KVTSDKDLEV KLDDNAQPLG MIDQTKLELN LYNPMHQDRV TKGASAKDEQ NSTALSKVSE SSKPSFVLTV PSNQGASDRR VVIDKAFALR YMRRTRNFEV SLQVEERIWA VRCTVSGKRH RFCKGWSKFA HENSLCGGDV CVFELINEAQ MLLKVCIHRA AKS // ID A0A165A1I5_DAUCA Unreviewed; 317 AA. AC A0A165A1I5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM96758.1}; GN ORFNames=DCAR_015880 {ECO:0000313|EMBL:KZM96758.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM96758.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM96758.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM96758.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM96758.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM96758.1; -; Genomic_DNA. DR RefSeq; XP_017245175.1; XM_017389686.1. DR GeneID; 108216839; -. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 317 AA; 35387 MW; 89465C49FB80A3B1 CRC64; MEMSDSAGKG RSFGKIMFSE ICLHDKMMIP EKFVRKYGKQ LHVGVSLKVP GGAFWHVDLV GDGDKVWLQN GWPKFARFYS LAFGHFLVFK YQGNSQFDVF IYDQRGVEVD YPVDSSLHMN EQKNLNLGEF SQVRKRVAID VDGLKACKKT RANSACAEAC HFGECLIRKL QHKKALVSRL DGNIQPPEQG EIDIYTQQQG FDMHEMVLES SDDETDSSGE DMATQNGGTS ATRRGLSGGF RMSTKSRLTK TMVIGLSAAA HEEKDRHASC SRNGSEAEAX GQVKERLNLT IFTSILSINL DSIPPICAIQ REARPHF // ID A0A165A882_DAUCA Unreviewed; 759 AA. AC A0A165A882; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_015554 {ECO:0000313|EMBL:KZM97084.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM97084.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM97084.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM97084.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM97084.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM97084.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 177 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 653 735 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 177 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 759 AA; 84645 MW; 653E5C39DF0E1DBC CRC64; MEIDLNHVVS EVEEPNACNG ECNKKGDASV VCCLSSSTSS CSSTISSPMA AAAAAAASPM FMELWHACAG PLITLPKKGD LVVYFPQGHL EQAASASPFP HIQVSNFDLN PQIFCKILDV QLLANKENDE VYTQLTLLPV PEPEFPDTNL EEKQHECPGM DDEEGGATPT KSTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFAPLDYTQ QRPSQELAAK DLHGVEWKFR HIYRGQPRRH LLTTGWTIFV SQKNLVSGDA VLFLRGANGD LRLGIRRAAR PRNGLPDSVI GSQNTCRDVL SSVANAISSN SPFHIYYNPR ASHAEFVVNY QEYVKSIRSQ IPIGVRFKTK FDKDDSSERR FGGVVTGIQD LDIYKWPNSK WRCLRVRWDD KDAIGRHDRV SPWEIDLSVS LPPLSIPSSP RLKKLRTSLQ ATPPSNPIPA RVGFLDFEES SRSSKVLQGQ ENVGLVSSHD RGDKLNYPSE FEMQSIMHQR IASHRMSNTG ANNFTRAQPS NTYTGFLESN KFPKVLQGQE ICSLKFLTGK SDVKLSAWGK TIGYDLLDMH QTPKANFYPL ASEGTRNMYF PSNNVNKAAQ DHGMLAYTNF PKEKLPLISS FNQSGYTNHE ATKFNSSNES RSDSVISSFP EVKVNSKYEK DDILNGMVHK QGNLVGRSID LSKLNGYDDL LIEIESLFSM EGLLRDPAKG WRILFTDNEN DMMVVGDDPW NDFCKMVSKI HIYTQAEVEK MMIGMINDDT QSCLEEAPQ // ID A0A165WTS8_DAUCA Unreviewed; 694 AA. AC A0A165WTS8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_014984 {ECO:0000313|EMBL:KZM97654.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM97654.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM97654.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM97654.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM97654.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM97654.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 688 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 76581 MW; 03C50BB6CDE45DB3 CRC64; MDSKEKFKDT EKCLDSQFWH ACAGSMVQMP PVNSKVFYFP QGHSEHACQN VDFMNCPRLP PYVACRVSSI RFMADPDTDE VYANIRLVPI SGNEINCDDA GIPGNNGSGE QDKPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGNPDSTS GWNPAGGNSV VPYGGFSAFL RDDENKLARY GNGGSPPGCG NGTSKAKVKA ESVIEAATLA AEGQPFEVVY YPRASTPEFC VKASLVKSAM QIRWCSGMRF KMPFETEDSS RISWFMGTIS SVQVADPIRW PDSPWRLLQV TWDEPDLLQN VKSVSPWLVE LVSNMPSIHI SPFSPPRKKL RLPQHPDFPL DGQLPVPTFS RNLLGHNSPF ARFPDNTPAG MQGARHTQYG LPLADFHLQK LQSGLFPPGF SPFRHCSIPA RPSINPDINM SSSSENISCL LSIGNSAHNE KKIEDQKPRQ FLLFGQPILT KQQTMLSSSS FTSSGGDIDK VARMSAGDSY ASGSGFALRQ CTIREPSSSE GLLQCKGNLQ EAETSLEIGH CKVFMESEDV GRTLDLSLLS SYEELYRKLA TMFSIKSSDM LKHVLYRDIR GAVKHIGDEQ FSDFVKTARR LTILTDASSN DIEI // ID A0A165X0B4_DAUCA Unreviewed; 324 AA. AC A0A165X0B4; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM97823.1}; GN ORFNames=DCAR_014815 {ECO:0000313|EMBL:KZM97823.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM97823.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM97823.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM97823.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM97823.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM97823.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR017392; AP2/ERF-transcript_factor. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PIRSF; PIRSF038123; PTI6; 2. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 78 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 146 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 78 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 146 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 37506 MW; 4480776006C49B73 CRC64; MERKASLIRT KRARSDNNTY SSRFKGVVAL LNGHWGAQIY ANHQRIWLGT FNSENEAAMA YDSAAIKLRN YDSHRNFSWS SINAEEPKFQ RQFSTEEVIC MIKDGSYPSK FSDYLKLRGQ SKDSESGELN FSVEQKKGEF LCSKLFEKEL TPSDVGSLNR LVIPKKHAVT YFPRLSRGNE ASGEIDDLQL VFYDSSMRQW RFRYCYWKSS QSYVFTRGWN EFVREKKLKY KDRVIFFTYS YVGATDKLVQ KCLMIDVAYY SDSVVDETSD DLERSMHFGQ ENVELQKNGV DNDAEKNADK VLLKSKGAAD EQKIGFKLFG VQII // ID A0A165XTJ2_DAUCA Unreviewed; 834 AA. AC A0A165XTJ2; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_014129 {ECO:0000313|EMBL:KZM98509.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM98509.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM98509.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM98509.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM98509.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM98509.1; -; Genomic_DNA. DR RefSeq; XP_017247344.1; XM_017391855.1. DR GeneID; 108218761; -. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 708 792 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 834 AA; 92756 MW; 7C45F1CBDA7077E5 CRC64; MKLSTSGLGQ QSHEEEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE IDGHIPNYPN LSAQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFNIFYNPR ASPSEFVITL SKYFKAVLHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWYPG ASSFQDSRDE GVNSMAWLRG EMGEQGLNSL NFQSAGMIPW MQQRVDPTFA RNDLNQQYQA MLAAGLQNSG GGDSLRQPFM QFQQPVQYLQ AVGSHNPLLQ QQSLQQSGPH LHGQSHLLPE SHHRQLQQQS SNRPTEEHHS AYPEAYLIQS ELLQQRQQAN VPSPSYPKSD FSDANSKTSA SISPNMQNML GSLSSEGSGN LMNFTRNGQS MIAEQPAQQS WVSKFASSQV HTSASLSLPP YPGKAAAVEQ ESSSLDAQNQ ALFGSNIDSS GLLLPTTVSS HNTSSIDADI PSIPLGTSGF HNSLYGYMQD SSELLHSAGH VDPPTPSSTF VKVYKSGSVG RSLDITRFNS YNELREELGQ MFAIEGFLED PQRSGWQLVF VDRENDVLLL GDDPWEAFVN NVWYIKILSP EDVQKLGKQE LESFNQNAGE RMNSNGNDDR DLLCGLPSLG SLDY // ID A0A165ZCQ1_DAUCA Unreviewed; 511 AA. AC A0A165ZCQ1; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM99878.1}; GN ORFNames=DCAR_012760 {ECO:0000313|EMBL:KZM99878.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM99878.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM99878.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM99878.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM99878.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000004; KZM99878.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 386 482 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 386 482 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 511 AA; 57120 MW; 277941B4492DCACE CRC64; MEGYTCGTVS LEGPSGDFWH ASLIKHDNDL CIYEGWQSFV RDHFLEDGDT LLFGYEGDLQ FVVQVFDQSS CEKEAASTAR CSQDQSKCNN LNAKKRESVE NTVGYPRKKM RSSQVPSDIA VKERRLQGIV ASMGMTSETS RLSTLAEYVS GPSKNSVAVA GPSGKNSVNH ALLSATEADR IAQAFTSLYP TFTKVMKRFN VSGSYTLNIP YQFSMAHLPK CKVQLILRNE DGKSWVINSI PNTRVQTSHT FCGGWLSFVR DNTINMGDIC IFELVQNCEF LVRILRVQTE GVDNHSNKSV CKMTNNSCAT QKTPGYMTTS KGNSRESHAK PKSKAEKSGC NKNQGSNRRK NKQLQQSPQI RSFMSMKSAP EEKIAAESFL SNLPHFVRIM KKFNISGSFT MKVPCKFSME HLPSCRTEIV LRNIKGDCWT VNSVPTMKVQ TLHTFCGGWM AFVRDNDIQM GDICIFELIG KCEMRVHISS YGRKDQEYQG GRVASNELAL MVNSRPLLQG T // ID A0A165ZET6_DAUCA Unreviewed; 241 AA. AC A0A165ZET6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM99946.1}; GN ORFNames=DCAR_008701 {ECO:0000313|EMBL:KZM99946.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM99946.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM99946.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM99946.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM99946.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000003; KZM99946.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 27115 MW; E001D72B8F85AFF0 CRC64; MATSSSSKTS CFQCEDSISD SFKHGWRLRS GDVARLCNRC GSVYEDGRFC ETFHSNDDGW RDCESCGKLV HCGCVVSYNA YLLLDFGGVI CMDCSKRNFI TARNRCLSLE SQAGTANLSI DFGKKIHVEP CNLPWVNNTE LQQISRKPRS IITPLFEKML TASDVDHKLA RLVIPKKYAE AYFPVVTAPQ GGPVEFQDTD GKEWVFKFRY WPCSSSRTYV LEGLRDYMSA MKGQVGDMGK I // ID A0A165ZSM1_DAUCA Unreviewed; 249 AA. AC A0A165ZSM1; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN00375.1}; GN ORFNames=DCAR_009129 {ECO:0000313|EMBL:KZN00375.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN00375.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN00375.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN00375.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN00375.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000003; KZN00375.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 29114 MW; 64D6AD8CC10A6748 CRC64; MMCYDTSLNS DARLSPPHKR KRLEKDVVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII PKRFAIQHFP SIDVNARIED CVFHIDFYDA RKNLWTFRYC FWKCSRSYVF TGGWNKFVKA YKLQAGDNVL FYKNYSGDES FFGIEVRYAG ARNVVGSLAN NLYNGEELMN DDTVRVKEEH EVSASQLKEK DVMLFGVRIK RASKDFQGGR SNDVIKEEED YSVRRADCWR VKEEEEEFEG LKLDLNLSL // ID A0A165ZSN3_DAUCA Unreviewed; 198 AA. AC A0A165ZSN3; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 12-APR-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN00376.1}; GN ORFNames=DCAR_009130 {ECO:0000313|EMBL:KZN00376.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN00376.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN00376.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN00376.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN00376.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000003; KZN00376.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 92 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 198 AA; 22761 MW; 03DC84EC97F3EC72 CRC64; MMCYDTSLNC NACLSPPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGSRSYVFT GAWNKFVKAY ELQAGDSVLF YKNYSGDECF FGIEVRYAGA RNIVGSVTKN LNNVEEFMND DTIRVKEERE VSASEPKEKD FQLFGVRIKR ASTDFQGGRS IDVIKEEEDY LVHKADCRRV KEEEEEFEGL KVDLNLSL // ID A0A166B0C0_DAUCA Unreviewed; 248 AA. AC A0A166B0C0; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN02184.1}; GN ORFNames=DCAR_010938 {ECO:0000313|EMBL:KZN02184.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN02184.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN02184.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN02184.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN02184.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000003; KZN02184.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28685 MW; ED0BCE6D7A61B14C CRC64; MTKTLNRSRR NPSFMKLLFS DFSKKLLIPP KFARLHPGTL PKKCTLKPTG TQSSWPVRTI LIDNHLYFKE GWKAFAKHHS LQYGDMLVFR YAQDSEFYVD MFDNTCCLRE PVATSPALIL PGQGNKNHPE TAADELILSS EFPSFKRTMQ KTNVKSNGYL QIPLQFGRMY MKKITNYTSK LVSLDKGWVV QLLRGDKRVF KKGWSNFAKE NSLELDDVCV FQLINAKDNT FEVTIFKKPV EYSLFSRC // ID A0A166B0D3_DAUCA Unreviewed; 1193 AA. AC A0A166B0D3; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN02186.1}; GN ORFNames=DCAR_010940 {ECO:0000313|EMBL:KZN02186.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN02186.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN02186.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN02186.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN02186.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000003; KZN02186.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 8. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 8. DR SMART; SM01019; B3; 8. DR SUPFAM; SSF101936; SSF101936; 8. DR PROSITE; PS50863; B3; 8. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 306 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 681 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 732 829 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 876 960 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 966 1043 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1098 1192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 306 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 587 681 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 732 829 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 876 960 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 966 1043 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1098 1192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1193 AA; 136189 MW; B544B8DCE15D4ADA CRC64; MARRPNRPAR IRPYFVKVIC KRFSKKLLIP RKYVSLHRET LGKECVLWPS HTRESFRVRT KNIDDELYFK KGWKVFARTH SLKFGDLLIF RHVRDSEFDV DVLDMNGTPR EPVLSENDHI LGEVARAPPS HIGRQKNITE TAALTGADAL ISSSDAPFFK KIMKAAELKP GGYLYVPARY AKDYMKDGTN DVKIEYSDKV WIAKVLRRRA GDRRTFLDSG WSYLARESNI QEGDVCVFQL ISTEDNTLKL TIFKNNNAGG PKTSTSQTGR SKMSTLQTGR SKKSILQTEA ISSAEALAAS SEYHSFIKIM KPAYVRSNGC LHVPEHFAKK YLRNSSRDVK IKFLDDVWIL RRQPSEVRTF LGGWSDLARK NSLQVNDVCV FQLINTKDCT LKLTIFKQTS GENQGHKQCQ AKLKSRSSYS VKSKKYSKRA FEEAKESEAL PNKSFKCGED QKHGHLAEVK LESSDLDLEI TLVSKGPSPS DKALEDAKKF QSESKNTSFV AVMRPAYINY SYLHVPKTFV DEMDKKASGS QLKLQSSNCE MNAKLIFMKL PGMLGAKIRM LLFMLLSTLA APLLDMARRP KSSTTTKRVF IKVLFSGFMK KLLIPRKYVM LHGETLGKEC VLRPTHTSDS WRVRTKCIDD ELYFKKGWKK FAKHHSLQFG DLLIFRHVQN SEFDVDVVDK SGIPRKTLAF RTDQVMKDSA PVPTSRKKKA ILQTAALTAA EALIASSEYP SFYKIMKSAY VGSGGYLHVS FDFSKEHMKD YSGYVKIRLS ESKAWMIKVL RQASEGRTLL SAGWSNLARE NSLQVNDVCV FQLINKKDYT FQLTIFKHIS GGNQKHKNCK VKLKSSDSEP IPKSKKNSDK AFEEAERFKS MSKHHSIITV MHPAYVKRAF LHVPSAFHNY MCKEEGENEV RLQCLGKERK VIMRNVREQC RISKGWGAFV KENSIEVDDV CVLELISKED ALIKMIPPKF VRLHRGTLPR KCLLKASHTQ YSWPVRVKQM NNFLYFKKGW GKFAQFHSLK SRDLLVFRYD QDSVFSVDMF DESCCSKKLV TTSQNEKPRT KSSPAIESSK FKTFVNHKKP GGLIAAEELM ASSEFPKFIL VMQPIYVKSG GYMHVPQEFA NMHLEESPRE LKIEVGDKTW SIGIVKDRRS RRLTKGWCPF VRENGLKLGD VCVFQLTNAQ DFTLKLSIFS STT // ID A0A166C1W5_DAUCA Unreviewed; 1111 AA. AC A0A166C1W5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_011930 {ECO:0000313|EMBL:KZN03174.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN03174.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN03174.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN03174.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN03174.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000003; KZN03174.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 984 1077 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1111 AA; 124010 MW; 25078EC3A1F94FAA CRC64; MEAGERKAIN SELWHACAGP LVSLPPVGSL VVYFPQGHSE QVAASMQKET DGIPSYPNLP SKLVCMLHNV TLQADAETDE VYAQMTLQPV NKYDQDALLI SDMGLKQSRQ PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFTMQP PAQEIVARDL HDQTWTFRHI FRGQPKRHLL TTGWSVFVSS KRLFAGDSVL FIRDEKSQLL LGIRRANRQQ PALSSSVISS DSMHIGILAA AAHAAANNSP FTIFYNPRAS PAEFVIPLAK YNKAMYAQVS LGMRFRMMFE TEESGVRRYM GTITGISDLD AARWKSSQWR NLQVGWDEST AGERPSRVSI WDIEPVVTPF YICPPPFFRP KFPRQAGLPD DESDMENAFK RGMPWLDDYG MKDASNSILP GLSLVQWMSM QQNQRFPGTQ PASFSPVVSS TALQSGLGTD DPSKLLNFQA PALSIPNLQF NKANQQNQPG GQMQQSSLAW HQQQQMQQLL QTSANQQQQQ QQQQQQQQSH QHSQQQQQQQ QQQQSNQPQQ QHQQKQSIQQ SQPLQLPQQQ QQPLVQVQQP IQQVQQPRPQ QLHQQQQILQ SSLVNSGGVS SNQIPIQSSM LPINYSQLQQ QQLLAGNTQL QQTNPINSRN SIQMTSLPQD LQFQQSMEQM SRPQQQQHPQ LQQAQMQLLQ QSLSQRPQMQ HTLQQSLSEQ QLQLLQKLQQ QQQQQLPTPV SPRLEPQLPL QQQAFQQNRQ SQQMPMSQQQ LSGNSFSTSM LLPSAQFPMN QLLSQHKPLG INRAHSGITE GDAPSCSTSP STNNCQVAPS SFLNKNQQGS GGFLDETVVG PATNSIQELQ SRPDIRMKHE IMNPKGPDQP KYKGIASDQL EASSSATSYC LDVGGLQNFS LPGFTLDSDV QSHVKSNLPF AVNMDGLTPD ALLSRGFDSQ NVLSNYGGTP RDIETELSTA IDSQSFGVPN MSFKPGCSND VDIAMNETGV VSSGLWGNQT QRMRTYTKVQ KRGSVGRTID VTRYKGYDDL RHDLARMFGI EGQLQDPQRN EWKLVYVDNE NDILLVGDDP WEEFLGCVQS IKILSSAEVQ QMSLDGDLGN VAVLNQTCSG SDSGNAWKGQ YDDNSAASFN R // ID A0A166CKJ8_DAUCA Unreviewed; 786 AA. AC A0A166CKJ8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_004816 {ECO:0000313|EMBL:KZN04018.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN04018.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN04018.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN04018.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN04018.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN04018.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 653 737 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 786 AA; 87299 MW; 7F380AF556986A0C CRC64; MRLSSASFNR QSPEGEKSCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVVASTNRE VDAHIPNHPN LPPQLICQLH NITMHADAET DEVYAQMTLQ PLNAEEQKEP FLPADLAAHS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHENEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LFLGIRRAIR PQTVMPSSVL SCDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFNGKLIL HSYYDNGNPH DYILPTRIKD ESLGMNSPLM WLRGDNGEQA FQSLNFQGLG VSPWMQPRVD ASMLGMQTAD IYQAMAAAAL QEMRTVDTSK HSNPSAMQFQ QTQDEDSQLN FSRSAALLTS AGWPPKRVAV DPLLSSGVSQ SFLPQLQQLG SLHTNSSQDA FPLLPYNGRD CSIDQGGDND SHRPLLFGAN IDSTSLLVQN GISGLGGVGS DGNSTSVPFT SSNYMSNAGV DFSLNPSITA SSCIDETNFL QSHENLVQKD TPPTFVKVYK SGSFGRSLDI AKFSSYIELR SELAHMFGLE GQLEDPIRSG WQLVFVDREN DVLLLGDDPW PEFVNSVWCI KILSPQEVQE MGKQGLELLN SVPVQRLSSN NCDNYPSQHE SRNLSNGIAS VGSLDY // ID A0A166DG18_DAUCA Unreviewed; 365 AA. AC A0A166DG18; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_006053 {ECO:0000313|EMBL:KZN05216.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN05216.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN05216.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN05216.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN05216.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN05216.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 40934 MW; 2260A4D18E8DA2C9 CRC64; MEIDLNQVVD EVGRAADCNG DCNKSDGAVS PTYVELWHAC AGPLITLPKK GNVVVYFPQG HLETSPFPHT QMPNFDLRPQ IFCRVMDVLL LANKESDEVY TQLSLLPVPE LLGMNLEGKQ NDDLWVDKED EEGAGLMPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFAPLDYREQ RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLISGDAV LFLRGESGEL RLGIRRAARP KNGLPDQVTG NQSSSYNILS SVANAVSTKS VFHLFYSPRA THAEFVVPQQ KYMKSIKSQI LVGTRFKMKC DVDDAPERRF SGLVTGIGDL DPYKWPDSKW RCLKIMIFDI SSNSK // ID A0A166DLL9_DAUCA Unreviewed; 537 AA. AC A0A166DLL9; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN05399.1}; GN ORFNames=DCAR_006236 {ECO:0000313|EMBL:KZN05399.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN05399.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN05399.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN05399.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN05399.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN05399.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0008519; F:ammonium transmembrane transporter activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR018047; Ammonium_transpt_CS. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR024041; NH4_transpt_AmtB-like_dom. DR Pfam; PF00909; Ammonium_transp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF111352; SSF111352; 1. DR PROSITE; PS01219; AMMONIUM_TRANSP; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAAS:SAAS00010892, ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAAS:SAAS00010892, KW ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00010892, KW ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|SAAS:SAAS00724533}. FT TRANSMEM 237 260 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 266 284 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 296 316 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 328 352 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 359 377 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 383 404 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 416 438 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 472 501 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 42 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 537 AA; 59645 MW; CB2873EAABFD3580 CRC64; MMCNTSLNCN ARLSPPHKRQ RLEKDAVIAI HDGEYHAREF LFKKVLAKSD VGRLSRLIIL KKFAIQNFPS IDVNAPIEDC VFHIDFYDAR KNLWTFRYCF WKCSRSYVFT GGWNKFVKAY QLQAGDTVLF YKNHCGDESF FGIEVRYAGA RNIVGSLANN LYNGEEFMND DTVRVKKEHE VSASQLKEKD VMLFGVRIKR ASKDFQATMV GLQSVPGLII LYGGAVKKKW AVNSAFMALY AFASFSIWSL EGWLALKGII DYSGGYVIHL SSGVAGFTAA YWVGPRLTKD RERFPPNNII LMLAGAGLLW MGWTGFNGGD PYSVSTDASL AVLNTHICAA TSLLTWLFLD IIFFRKASVI GAVQGMITGL VCITPAAGVV EGWAAIIMGI CSGSIPWFTM MVVHKRSELL QRVDDTMAVF HTHAIAGCLG GILTGLFAKP SLCNLFYAKY AHYVGLFYGF REGRVHAGFR QIGIQLLGIL FVVVVNVVVT SLVCLLVQLI FPLRMSDEDM EVGDDAIHGE EAYAIWGDGE KLDAASY // ID A0A166DU43_DAUCA Unreviewed; 797 AA. AC A0A166DU43; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 10. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_006517 {ECO:0000313|EMBL:KZN05680.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN05680.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN05680.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN05680.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN05680.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN05680.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 606 687 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 797 AA; 89052 MW; 4D670AAF4CD630FE CRC64; MANLGCISQP HLLSQGNNGG MEDMYTELWK ACAGPLVDIP RNGERVYYFP QGHMEQLEAS TNQELNQSIP LFELPNKILC RVVHVQLKAE QETDEVYAQI TLLPEPRQNE PISPDSCHPE PPRTAVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM TQATPTQELV AKDLHGTEWR FKHIFRDITS MAESVYKTPG QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GENKELRVGV RRHAQQQSSM PSSVISSQSM HLGVLATASH AVATQTLFVV FYKPRTSQFI IGLNKYLEAV KNGYTVGVRF KMRFEGEESP ERRFTGTIVG VEDVSSQWKC SKWRSLKVQW DEPASIARPE RVSPWEIEPF VASVPPSLSQ TAPVKNKRPR PPSEISALGK TTVPVIQSNP KRSISIILDS IVHDSCTTGV VEPTSTAVSA AWNPSHDSSQ LNVSLEGQRT DSNVYRQPMQ SAKYSNLTTE SSHVRAPWSK ISDENEDSKS ASAWSVQRSF TNQNPTYQYN EQLPLPVEEK KSDAVTTCRL FGFDLKSSTD AAKKVTPLTP VNVFIKAADG GDSEEKSELS KDSKMKHQGL QVSPKEVQSK QNCSTRSHTK VQMQGIAVGR AVDLSVLRGY DELISELEEM FDIKGQLYPR DQWEIVFTDD EGDMMLMGDD PWQEFCDMVK RILICSSQDV KKMRVGMKLP ISSTDHEVSG FSLDSAISLI ELDRLTKFRS GKATVLGTLV RQPVVFQFFY HLSFSFYLHT VNTISSDYSS NEHNAQGWGT GPLSVKSVKE IAGFDFL // ID A0A166ECT3_DAUCA Unreviewed; 357 AA. AC A0A166ECT3; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN06391.1}; GN ORFNames=DCAR_007228 {ECO:0000313|EMBL:KZN06391.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN06391.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN06391.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN06391.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN06391.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN06391.1; -; Genomic_DNA. DR RefSeq; XP_017236821.1; XM_017381332.1. DR GeneID; 108210076; -. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 188 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 188 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 40120 MW; 12E6FFEFA03B4590 CRC64; MDGSCIDEQS TTSDSLPISQ TSSPPSIIFT SLPLKNSPER LCRMGSGASV VLDSENNGLE AESRKLPSSK FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EHEAAKAYDI AAQRFRGRDA VTNFKPLLDT EDETNFLNSH SKAEIVDMLR KHTYNDELEQ SKRNCGFQKW SHGNSMCDKI VSAREHLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGA TSKGVLLNFE DVVGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLKAGDV VNFQRSSGPD KQLYIDWKER TGPGLVTAAP VQMVRLFGVN IFKVPSHGVA GVNNNVNDDQ VSFCNGKRRL EMLGLDCNKK QRIINVV // ID A0A166EQS7_DAUCA Unreviewed; 508 AA. AC A0A166EQS7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN06857.1}; GN ORFNames=DCAR_007694 {ECO:0000313|EMBL:KZN06857.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN06857.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN06857.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN06857.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN06857.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN06857.1; -; Genomic_DNA. DR RefSeq; XP_017234508.1; XM_017379019.1. DR GeneID; 108208484; -. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 447 508 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 447 508 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 508 AA; 55956 MW; 2D6C1724516F5319 CRC64; MGDKELACGE CKHKDSLIHG KKAAPVTTFN KILFGGYDIS KDLCLPQKIS QAIPNLVPGD KYILQDTNGQ QWEVTLGIKD KIHWAFREGW NKFYEDHGLK TGYILAFHYT MDAPFVVEIF DRTGFEKINF PVATGKKRKT SENDGNCNAI VGECQNLSNH SSKNQGVAFS GTSDSEARTQ SQPMSKDKSL SLENGNGEYQ LAASANCDIE PHCMIDRYDG SKYEQDRTTV LNLANSEMQF GVELDGSTDK GTYPSNAATE SDAIAGNISE NLESAKVVIG DPPAEVAVTL SNSNNNITSE YVAEVFDDHH GSNPPAEVVV ALSNNNNITS EYVAEVINDN HGSNQVHSES RIKSSTGSRK RVRREPARSV RQSKRNSTKI SKRTNQISGG EERENEVRKV TKTELVNSSD GDSLDASAFS FTAIVRSPEV LEVAAAVILW ADEKKVVNLQ GPNQKVWPVL YHNKLGIKAL TSGWENFCMS NGLRIGDECA FKLVDEEKTI FRIDVKTK // ID A0A166EZ04_DAUCA Unreviewed; 704 AA. AC A0A166EZ04; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_007988 {ECO:0000313|EMBL:KZN07151.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN07151.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN07151.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN07151.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN07151.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN07151.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 704 AA; 77877 MW; 6A3657FC47221EE1 CRC64; MCRLIDLNTV NEDDDETTPY SFDSSASSSS STPVPVNVTT SSPAVCLELW HACAGPLISL PKKGSSVVYL PQGQLEYMKD VPDAAYHLPA HVFCRVLDVK FHAEAATDEV YAQVCLIPES QIEVKWWEGK SDAQAEDEET EFVVKSMTPH MFCKNLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGL EWKFRHIYRG QPRRHLLTTG WSAFVNKKKL VCGDAVLFLR GDDGELRLGI RRAGQAKSGA KFALACTLQL NDIASVVKAI STKSVFNLCY NPRSSSSNFV VPFYKFSKSL SNSFTPGMRF KMLTETEDAT ERRCPGLIIG ISDVDPLRWP GSKWRCLMVR WDDMEVTQHN RVSPWEIELS SYVSGASGLV LHSMKRSRIG FPTQPDLPVS RGAHAQKHHP PDKRGWYPGS VSCDSAIGSG ARSNLRNSEK SCDGVDFGES LRLNKVLQGQ ETYSKHPYGK CPQATLGNGD PGHMKGVQAI SDGTGCPFLM PGYSTCVRPS TPLVKMSSLS VPKFHESSIS DPKFGAISSL NSWEKLESNN YGSLNRRFDG RITPSSPCVI DSKFQTESRQ GLASIGLPNE QKQLALLKRP LETQLSNKGS SNLLSTCENS CRLFGFPLTE SSHVHKECNP NWVQSPYIQQ SSHLPQRDEQ FYSHSLSTTK MVGGSCTKAS DIYTARDMLL DIAM // ID A0A166FFT5_DAUCA Unreviewed; 214 AA. AC A0A166FFT5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN07734.1}; GN ORFNames=DCAR_008571 {ECO:0000313|EMBL:KZN07734.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN07734.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN07734.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN07734.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN07734.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN07734.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 24991 MW; 634FDD8845C23E2C CRC64; MMRYDTSLNC NAWLSAPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII PKRFAIQHFP SIDVNARIED CVFHIDFYDG LKNLWTFRYC FWKCSRSYVF TGAWNKFVKA YELQAGDSVL FYKNYSGDES FFGIEVRYAG ARNLVGSVTK NLNNVEEFMN DDTVRVKEEH EVSASQLKEK DVMLFGVRIK RASKDFQGKN LIIM // ID A0A166FFV6_DAUCA Unreviewed; 420 AA. AC A0A166FFV6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN07735.1}; GN ORFNames=DCAR_008572 {ECO:0000313|EMBL:KZN07735.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN07735.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN07735.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN07735.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN07735.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN07735.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 48797 MW; 427D1837425C586A CRC64; MMCYDTSLNS DARLSPPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII PKRFAIQHFP SIDVNARRWN KFVKAYKLQA GDNVLFYKNY NGDEGFFGIE VRYAGTRNVV GSLANNLYNG EEFINDDTVR VKEEHEVSAS QLKEKDVMLF GVRIKRASKD FQGESNDVIK EEEDYLVHKA DYRRVKEEEF EGLKITMMCY DTSLNSDARL SPPHKRQRLE KDAVIAIHDG EYHAREFLFK KVLAKSDVGR LSRLIIPKRF AIQHFPSIDV NARIEDCVFH IDFYDARKNL WTFRYCFWKC SRSYVFTGGW NKFVKAYKLQ AGDNVLFYKN YSGDESFFGI EVRYAGARNV VGSLANNLYN GEELMNDDTA RVKEEHEVSA SQLKEKDVML FGVRIKRASK DFQGKNLVIM // ID A0A166FFW7_DAUCA Unreviewed; 250 AA. AC A0A166FFW7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN07736.1}; GN ORFNames=DCAR_008573 {ECO:0000313|EMBL:KZN07736.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN07736.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN07736.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN07736.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN07736.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN07736.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 250 AA; 29165 MW; 6141E61B153EB7A2 CRC64; MMCIYDTSLN SDARLSPPHK RQRLEKDAVI AIHDGEYHAR EFLFKKVLAK SDVGRLSRLI IPKKFAIQNF PTIDVDAPIE DCVFHIDFYD GRKNLWTFRY CFWKCSRSYV FTGAWNKFVK AYELQAGDSV LFYKNYSGDE SFFGIEVRYA GARNIVGSVT KNLNNAEEFM NDDILRVKEE REVSASELKE KYFQLFGVRI KRASTDFQGG RSIDVIKKEE DYLVHKANCR RVKEEEEEFE GLKVDLNLSL // ID A0A166FFY1_DAUCA Unreviewed; 249 AA. AC A0A166FFY1; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN07737.1}; GN ORFNames=DCAR_008574 {ECO:0000313|EMBL:KZN07737.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN07737.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN07737.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN07737.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN07737.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000002; KZN07737.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 29162 MW; 35F681ED452BFA4A CRC64; MMCYDTSLNS DARLSPPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII PKRFAIQHFP SIDVNARIED CVFHIDFYDA RKNLWTFRYC FWKCSRSYVF TGAWNKFVKA YELQAGDSVL FYKNYSGDES FFGIEVRYAG ARNIVGSVTK NLNNAEEFMN DDILRVKEER EVSASELKEK YFQLFGVRIK RASTDFQGGR SIDVIKKEED YLVHKADCRR VKEEEEEFEG LKVDLNLSL // ID A0A166FK34_DAUCA Unreviewed; 1036 AA. AC A0A166FK34; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN07870.1}; GN ORFNames=DCAR_000539 {ECO:0000313|EMBL:KZN07870.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN07870.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN07870.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN07870.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN07870.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN07870.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 587 689 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 587 689 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1036 AA; 115153 MW; 0A04959BB787139F CRC64; MAREKGVEVH AENAIFCGGD AAMDDDVVDE IMGALSEAEI WLGGDEQDET PVADSSIFDN SFPPLPDFPC MSSTSSSSST PALTTKQFVS SSASPASSSS SAASWAMIRS DADQRMKQDV RSIQYDPATP VPDLSDGFRP SDGSTGMEDV DCMDVMNNFG YMDLIDIEDG NDLWDPSCIF QSDDDQTYSR DQSIVSQDVR NREDENCYII EGGKEVKEKT GFDELGVMFF EWLKNNKEHI SAEDMRNIKF KRATIECASK RLGSTQEGRK QLLKLILEWV EQHHLQNKRN QDAAAAAHQV VPCQYQESFP NPNPNIQNTI PTMDANTFMW IPTQTYFNQA LVSPAASAPA VFPPPAMAYV VGDLQQQPFV GGANASPMNC QAYSPQMPMP PTGYHLLQPA QSWPQSQFVS APQYNSFPDQ NGTFAPITPQ PFAPVYGDQN PSQIYNGNNV EDPIRLGPSA TKEARKKRMA RQRRVSLHHY RHHPHQNQLK KVDSSGQNEG RFNIETCTDN IDGVTSPLNC ILQPPAIESP ILEQPHKEAQ PRQQECHTSD RTLLRAQSNQ QLTQTSERGQ QLQKQEFKGG NNFKLLLQKV LKQSDVGNLG RIVLPKKEAE THLPQLDERD GISIDMEDIG ISKVWNLRYR FWPNNKSRMY LLENTGDFVR TNGLQEGDFI VIYSDMKNGK YLIRGVKVRQ QPAKPKSEPK VKATRKNRNS GAGNGHSSTP SKLKGNFKLI LMLDLLKVEK YVQKLNALTI YNLSGAYEHT ESLSVGINSS DGYSMSGLAA LGRQLGAMGL KDEPRVDVNS AIAADLMGMY QSMGEALAHR QIKNVMLRTE LAQRTGVPEM PPNVAINLNL MLLVLSGQSS MQGRQDYCCL GGRGLVLQLL PKMLTRSTLS AENIVATTVQ SRPTVRVKDD SARPTLTLFN KEAKDLIGVQ VDRILRTSSV YQWIEYVLTE LSEDANLLNT LPIFKNIVGK ECASDIKINA YNIDRGYEEY TAFRLSECAA ASHDPDEGKM GGKAAKKQKT DCLTSATMHR AYILDK // ID A0A166FV39_DAUCA Unreviewed; 287 AA. AC A0A166FV39; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN08215.1}; GN ORFNames=DCAR_001280 {ECO:0000313|EMBL:KZN08215.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN08215.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN08215.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN08215.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN08215.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN08215.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 192 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 192 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 32624 MW; 0A12598E310368ED CRC64; MDSDLKIPIM FLKALIFFPR GTLPDKLRLP RGFVDLFGES LPEMLNLKTM EGFNFAVKYS KEDGCFSDMH GLLAKLLPKE CQFFLFKHLG GANFEVFILD VGCVLQGRNN SFECMFIRIF GKSSSEWSPL KLSEDVIDKF GSQVPSGIRF YDVSICDILV FTYTGGDLFV VHAFGKDCMP KRSCKDAGLY FEVEIKQSHL QDYDFGVTVP VKFKAATKNL GEAETLKIRH GQKSWNVVLK KRTNRVELHS GWSLLWKDLD LMTGDICVFN NAGSKLKFNL EVYKKSI // ID A0A166G4C5_DAUCA Unreviewed; 151 AA. AC A0A166G4C5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN08522.1}; GN ORFNames=DCAR_001052 {ECO:0000313|EMBL:KZN08522.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN08522.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN08522.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN08522.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN08522.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN08522.1; -; Genomic_DNA. DR RefSeq; XP_017246278.1; XM_017390789.1. DR GeneID; 108217886; -. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 151 AA; 17702 MW; D216D3965D8360E1 CRC64; MDQEMDVVLP PERVKLFDKV VTSSDIKQHR LAIPKYHARM HFPLPDPSDS KGSLLRMQDN EGKMWRFRFI FWKSYQGYVL TSEWNQFVRE KGLSAGDTVW FYRSTAPDMQ LYIDYTSQAK SDVATSNSDV FEQTPDVREF KLFGVTINFS L // ID A0A166GC66_DAUCA Unreviewed; 474 AA. AC A0A166GC66; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN08798.1}; GN ORFNames=DCAR_001454 {ECO:0000313|EMBL:KZN08798.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN08798.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN08798.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN08798.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN08798.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN08798.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 283 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 283 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 474 AA; 53522 MW; CC3137B5387FE48B CRC64; MVNFCTNYNI HERNLVTQWH KLWVGKLRGS TFVCPNFGSD YIAGILILPK EFPIENSGTI QERLLLHVAP GVVWNGKYSV ERNWIEGLEK MMLYYCIKPY YLIAMEYIGG PSFNLQIYNP YGVEVNYTVT DKSETLSSMD RSFFNFSDIE VDKLCGTMFS NVYNSGLHVY NLLISSSHLL KKDHTKILNR YACKQLGLLE EMKSVTLFFK NMSWVVNLKW DNGKAYMDRT WYDFARASRV KEGDICAFML SGPPGKFRVC VYERDLLTKC NEKGIGHASK VTNWFKIVND VVLYAGQMEI PRVFMEMNGG VLEETVNLIM GDGCSVAVNF SRSQSFFHGL KTLVDTYSIQ LNDVMVFHFL SDSTFAVSLF KATGMEYKLN SSHGAATKKT GGIREEEVII LSDSSGDGEP DLAMDIDGGI ADAQNLELAD DGNNEGNEFG DGNPLNMSFR VTLKKSHVDK RDHGARNICR FGKG // ID A0A166HRN1_DAUCA Unreviewed; 714 AA. AC A0A166HRN1; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN10311.1}; GN ORFNames=DCAR_002967 {ECO:0000313|EMBL:KZN10311.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN10311.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN10311.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN10311.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the mitochondrial carrier (TC 2.A.29) CC family. {ECO:0000256|RuleBase:RU000488, CC ECO:0000256|SAAS:SAAS00548220}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN10311.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN10311.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-UniRule. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.50.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR002067; Mit_carrier. DR InterPro; IPR018108; Mitochondrial_sb/sol_carrier. DR InterPro; IPR023395; Mt_carrier_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00153; Mito_carr; 3. DR PRINTS; PR00926; MITOCARRIER. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF103506; SSF103506; 1. DR PROSITE; PS50920; SOLCAR; 3. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAAS:SAAS00013441}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Repeat {ECO:0000256|SAAS:SAAS00498008}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAAS:SAAS00013441}; KW Transmembrane helix {ECO:0000256|SAAS:SAAS00013441}; KW Transport {ECO:0000256|RuleBase:RU000488, KW ECO:0000256|SAAS:SAAS00498016}. FT REPEAT 180 260 Solcar. {ECO:0000256|PROSITE- FT ProRule:PRU00282}. FT REPEAT 269 351 Solcar. {ECO:0000256|PROSITE- FT ProRule:PRU00282}. FT REPEAT 360 445 Solcar. {ECO:0000256|PROSITE- FT ProRule:PRU00282}. FT DOMAIN 464 566 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 714 AA; 77670 MW; A78A135D06C897A4 CRC64; MVPGNNPLES FHNSVQLVKN AFAPFEFSFQ KVTNDFQHCW SASRNGADNA ISFVAKKSEL RILCGSHSKV GKEWSVECFL GGLFDDLVQN LQKLNLGAGE IECTISDLCL GTPSGNKFNH VKALVGIFKG RRTDDSGVLL NVKFARVGGV PAGNVAVIDS EKEMTCEAST VAPTVDIPAE SVFKSALAGG ISCAFSSFIM HPVDTIKTQV QASTLTLPEI IVKIPQIGAR GLYKGSIPAV SGQFLGHGLR TAICEASKFV LVYLVPTLPD IQVQSAASLW STVLGTTFRV PTEVIKQRLQ AGIYENVGEA LIGTWQQDSL KGFFRGTGAT LCREVPFYVA GAGVYAESKK AVQHLLGREL EPWETILVGA VSGGLASVTT TPFDVIKTRM MTAIPGQPVS MSTIAFSIIR QEGPLGLFKG AVPRFFWVAP LGAMNFAGYE LLRKAMDRTN AQKVIKESKL KFLFQKQLQN SDVNNLKRMV IPKKAAEAYL PKLDKKGGIY IEMIDVDGSH IWNFIYSSQA NYSLKELINL DPGEFVNKHQ LSTGDLILVY EDRESKEYVI EARKTLSKSP NDSPKKKILK THSNKASARG QAPDDTPMND VPAAAPPPSG VKDNLPVKLE PTDDATNEIQ VMDCTNADSG MPLPDYGFDA YNPSGTIDNV LNLPNPNDSS SSLIYNDMNF PSDYLFNMWE PGASSTQPIP SFQNLCFDDI LKGL // ID A0A166IIW8_DAUCA Unreviewed; 761 AA. AC A0A166IIW8; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN11181.1}; GN ORFNames=DCAR_003837 {ECO:0000313|EMBL:KZN11181.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN11181.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN11181.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN11181.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN11181.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN11181.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 167 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 385 461 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 530 625 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 659 754 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 167 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 385 461 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 530 625 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 659 754 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 761 AA; 86943 MW; 8DF0E478D977BD40 CRC64; MNLGGLSRIS LKVPNGLAWR VTLKTRNGDV WLKNGWTEFA RFYSVKFGHL LIFKYRGHSE FKVRIFDSSS TEIDYPSFRS AKLDMGESSQ MRKRASEIHH SASSHLMRPH KKRVKNHAPN DAGHSGVFMT QNLQQETKKS GNCASKEAEA RALALAEAFR TDNPFFVYVM RRTYVDGKGR GLVIKKAFEE SYKKWKDNDQ VHLQVEGKKW LVHCDMKQDS CRLSSGWDKF VQDNSLTVGD VCVFELVDER RRLLQVVIFR ATKGTKGQEN EILPRVKSEA KPARVVASVN AFASKYPCFK AKVCPSCLYG ASLTVPRKFI KKYITEDCCH VTLENSDGET WLVKCSAYES GTKFGVGWKQ FARANQLAVG DVCAFELINF SEKMIPRKFV RKHGNKLGSR ISLKAPNGLV WKVNLERDEN EVWLQDGWPQ FAKFYSIQFG HLLFFKYRGH CDFKVRIFDP SCTEINYPSS KSAKLKSGES SKKRKRAIET DHLMLKLQKE KRDCPQEIEE ARARALASAE AFKSDNPVFL RVMKISHVDG KRRGLVLSKA FEETYKKWKD NDQVHLQVAG RIWPVNCIMK WNRCRLGSGW DRFAQDNSLS VGDVCVFELI NTCTKLLEVH IFSAAEETNE NTRLPRVKRE AKEAKVPASV DAFTSRYPFF RINVYPSSLS GGSLGLPQKF VKRFITKDSC NVTLRISDGR EWSVRCGVYN SCTKFSVGWK IFAQANRLAA GDVCIFELIN FSEKLLNVVI FREVAECCHQ C // ID A0A166IIZ5_DAUCA Unreviewed; 1023 AA. AC A0A166IIZ5; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN11182.1}; GN ORFNames=DCAR_003838 {ECO:0000313|EMBL:KZN11182.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN11182.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN11182.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN11182.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN11182.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN11182.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 7. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 343 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 425 520 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 640 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 728 826 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 912 1009 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 155 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 343 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 425 520 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 547 640 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 728 826 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 912 1009 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1023 AA; 116146 MW; 6AA3518EB23C4165 CRC64; MCNHSLTDRI VIVMHMLQMI PKKFASIHGK NLDDKISLKV PGGSVWPIKL KRHKNKGDSK FQVLVFDPSG LETDYPLTST TENRNVVRLG RAKKRVVDSD DSTSVDVVRP CKRTTASSSC KAGEDGPKVK QEKAERNGVA LASAKAFKSK NPSFIHVMKS SNVVGAWPNV YITNTFKEAY KKWKNNDKVI LRVENRRWTV YCSVNSNQCR FGRKWGKFAR ENSLNVDDVC VFELINPSRK LLQVLIFREE ETSLQVDLWI HIYVQMIPRK FERLFEKNLD NRIQLSVPSG SVWSIDLEKQ QDKVWLQNGW PEFAKFYSIG FGYLLVFEYQ EDSKFKVLIF DPSASEIDYP ANCSTTLEFV KSTKVEKKRE NEFNISDDSD EISPRKRTRA SYSCIANSNG KSACNVKKDP ALAAAKDFKS EKPYFIVSMT PSHIKGSSGM HITKTFEEVY KKWMKNVEVI LEVGGKTWPV FSYFNLSNDR CAFRHGWADF ARDNSLKVGD VCVFELINPS KKLLKHSSPE HSDYEALEMG DIIQVPACMD PLVKPRYFFK MIVSTITPHS RLMIPTKFLT TCGDDLADFI FLEAPAGSIW QVKLERSDSQ VWLQNGWPDF AEHYSICFGH LLVFRYKGNS HFHVIIMDKS ATEVEYPLSA TSHSEETDHV TGLGKGKEVA ADDIGRREDF TICLASSAQY TKTVLASAEA SHQVNQKALQ VTSEAEVSAK AFRSENPFFK INMRPSYVDG RCLSVPKIFV TTHITRDHCN VILQSSDGRS WPVKCTTSRS YRTAARFTSG WRNFAHANSL AGDSKFLVRI FDPSASEIDY PLATTKIPNS VKSRSKVKKT VIDIDDTTSS EMIRPSKKIR ASSAPIAARN TGPKLQHKKA MENDEPAPAS KEDKDRALAS AKAFRSKNPF FIHAMKPIYV YENGSGVYIP KTFKEAYKKW KYQNQILLEA EGRIWPVTCS LYSHCNQCRI RQGWAQFARD NSLKAGDVCV FELINPSTKL LQVLIFRATK EAENLECLHH LKL // ID A0A166IKG7_DAUCA Unreviewed; 490 AA. AC A0A166IKG7; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN11221.1}; GN ORFNames=DCAR_003877 {ECO:0000313|EMBL:KZN11221.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN11221.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN11221.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN11221.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN11221.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN11221.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 279 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 397 490 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 279 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 397 490 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 490 AA; 55527 MW; 864CEA23FE1E35D2 CRC64; MLSTRAVKYL RALILLPTQD LALQELQSSV DILVAAPGRL MDHINNTKGF TLEHLHYLLS WADMMPGKPN RFFKIILTNV GSHTKLQLPR EFLRIFSKNL KDSIMLNVPG GLEWPVDLER QKAKVWLQNG WPKFADCYSI SFGYLLVFEY MGDSKFQVFI FDPSSLEIDY PLASNDKPDA VKSAQVKRRL IDIDESETSD NSSSSDDSSS SDYAVRYCKK KKAKSTSSEE SANLGLEKAP TEVQKDRATA VANAFKSKNP FFVHAMKASH IVGGGWPNVY IPKTFKDAYK KWQSNEKLIL DVEGNSWIVS CNLNLNCRQC RISRGWTIFA RENSLVVGDV CVFELINRSS KRFKVFISRA AKETNDEGNK RLARVRSEAE RARVLESVEA YKPNRPFFTV KVHRCYLYGG SMTVPMDFIN KYITRGSCSI DLQLPDGKVW SVKCYIRDKC AKFSAGWKNF SIENKLAAGD ICGFELVNKS LLKVAIFRVG // ID A0A166IKM0_DAUCA Unreviewed; 398 AA. AC A0A166IKM0; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_003884 {ECO:0000313|EMBL:KZN11228.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN11228.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN11228.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN11228.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN11228.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN11228.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 398 AA; 44706 MW; 7EB48EA687EE58F2 CRC64; MESANMRLSP SGFNQQSPEG EKSCLNSELW HACAGPLVSL PAVGSRVVYF PQGHSEQVAA STNREVDCHI PNYPSLPPQL ICQLHNLTMH ADVETDEVYA QMTLQPLNPQ EQKEAFLPAD LGGTSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDAVIFIW NEKNQLFLGI RRANRPQTVM PSSVLSSDSM HLGLLAAAAH AASTNSRFNI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSPFPLRLKR PWPPGLPSFN GKSNYSLL // ID A0A166ITQ6_DAUCA Unreviewed; 831 AA. AC A0A166ITQ6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN11479.1}; GN ORFNames=DCAR_004135 {ECO:0000313|EMBL:KZN11479.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN11479.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN11479.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN11479.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN11479.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN11479.1; -; Genomic_DNA. DR RefSeq; XP_017235139.1; XM_017379650.1. DR GeneID; 108208979; -. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 333 434 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 591 641 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 333 434 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 831 AA; 91834 MW; 2712C8DEB9A7DA06 CRC64; MALCFNPMCK QPVTERSGRG WRCETGQFAD LCPRCASAYE DGNFCEVFHL TASGWRCCEC CGKQIHCGCV VSRHMFILLD AGGIKCMACV KKSSVLTPNP AWPPPLYYHG SSPDEVKDLL VKNWSSIVGS GPVPWREAPS WFNKNTSKVE LNLKIPSQVE VLGGIDRLYA HKGAPNCSLD KNKKWESSGR ITNGSPSGGA LENVGNDVSG SKYEEQPTTN PNVTPQSNIS ILEPSTQTSH FCPGLNPEFI REITEKDKVS GINACVIPPP AINNFFPSSS GVESNSRAQT HNGNPRGGGE AQSQLPLSNG PRITNQELQA ISGHPRTAVT FLFEKTLSAS DAGRMSRLVL PKKCAEAYLP EISNPEGIPL MMKDMKGNEW MFHFRFWPNN NSRMYLLEGV TPCIQSMQLV AGDTVTFCRL EPEGTLVMGG RKSSTPPGNQ SKESINTGNE LSTHREVTTR ASRPGESFSA PIHVEDNMIS SSLLTTSQAN SADPKNKWTE ADNFKTAKND VPGGEIFLSK KKNSTFGSNS KRLRMGNNQI IELEITLKEV QGLLRPPSDY APQIVIIDGN EIAEFEEPPV IGRPTILATD CVGKFQWAQC EDCCKWRRIP SDILLPSRWT CYKNSWDPER SLCSVAQELI PEELEDLLIT AKKQKFKKQD EPDSVDALEG LNELANLAIH EKGGILPLSR TTSKHPRHRP GCTCIVCIQS PGGKGPKHRQ TCTCNACVTI KRRFQTIMSK HEMKQTEDKR QKLQQPEDIL RCSDNGNCSS SHDAVTNDGS GHDSYKMKYF ESPFKRQIDL NVQPEGEEDL SPFSNSGSMM RLLQNATGRF L // ID A0A166JDD6_DAUCA Unreviewed; 1286 AA. AC A0A166JDD6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN12045.1}; GN ORFNames=DCAR_004701 {ECO:0000313|EMBL:KZN12045.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN12045.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN12045.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN12045.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN12045.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN12045.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006396; P:RNA processing; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 2. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR003107; HAT. DR InterPro; IPR009003; Peptidase_S1_PA. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00386; HAT; 4. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF48452; SSF48452; 2. DR SUPFAM; SSF50494; SSF50494; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1113 1204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1113 1204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1286 AA; 144776 MW; A24166D38C5F3C3A CRC64; MGDSETVVTQ TTSVMAYTST EYASTDNYNE NAASDAVTSD AGVAGNVPSK ISAGSGEMKV LTDVMVTDNT SEHTQNPTDE NGNQNLAKEE VPTKQMMLVA NSANVGENGT IAVANDFMSD APALSAEEER LWSIVRANSL EFDAWTALIE ETERVAEGHI SKVRKVYDAF LAEFPLCYGY WKKAVQGVTY SVDMWLHYCV FAINTYGDPD TVRRLFERGL LYVGSDFLSY TMWDKYIEYE YTKQEWSRLA MIYTRILENP NKHLDRYFTR YNSYYSFREL VAQRPLSELR TAEETAAAAA VGTTVQEIEE EVHPNAVESP KPVSAGITEA EELEKYITIR EEMYNKAKEF QSKIIGFERA IKRPYFHVRP LNPVELANWN NYLDFVEAED DFQKVVKLYE RCLIDCANYP KYWIRYILHM EARGSTDLAE NALGHATQVF VKGKAEDACS LYEQAVAIEK GKEHSQTLPQ LFAQYTRFVY LAVIHLESIQ STPKQIEFLD SLINKFNAPN PDNPCAASFI DREELSSIFL EAEDRHSELF FVHKSTSESK IRHADDILQS DKAKLAKSGY SSSPSVMGAY QSTKNQWPAG YGAQPQAWPQ ATQAQAQNWT PAYTQAAYGG AYGNAYAQPQ VQTSVPQAAA ATAYGAYPPA YTVQAQQTYV QAATPAPLAP GSSTATCCCC CPSILWHLLL LSQLMFHTIL QFVAQIVCHW GMMEQQQQQQ MPTVFDDHII RGFEQEYRKA VAKVFIRNHG DKGWTGFIVS LSPTVVITVA HAVGSFPVHQ VFSEDQFYLK FYDDPAEYKA RALKCSFKSD LLMLHCELRP SAVSFFEFAD HTSPLLSSTS LLCISHPAQR DWVTLRGTVC RVPFLMGENE NYDHNMQLFD HDAQCFPGSS GAPITDLRGR VIGMNFSEYT IKEHCFCVPN NAKETNLSTY QDGRVVPHQI KELTFLPCNV KQGITLQYIA QTIRSFFQDE GFNDVDMNLN NYVRRSAIKY IMKEAKRKNQ GKQPSQTPQG KRPREQRPAE ETTEESNVFN PCLSISEGHG ETCLGDIKKC RKSEQIEAPL DVEVVSFNLD MSIASHEPKV TTRVGHKFDQ KTFSLMKQAL EIQAKLAPKF PSFVKNMLPS HVAGGFWLGI PKNFSDMHLP KHDETVVLID ETELEHETKY FFEKNGLGVG WRGFSITHKL QENDVLVFHL IQECKFKVYI VRANALTGSD GSACVEEMNC DHGEKDLKIT VMAGEEHLEH YSSIHCGQKK DKQMTLSSDL KGAMKCKILE EEEAGGTMGK AQGIIM // ID A0A166JDK9_DAUCA Unreviewed; 662 AA. AC A0A166JDK9; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN12050.1}; GN ORFNames=DCAR_004706 {ECO:0000313|EMBL:KZN12050.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN12050.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN12050.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN12050.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN12050.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN12050.1; -; Genomic_DNA. DR RefSeq; XP_017233965.1; XM_017378476.1. DR GeneID; 108208000; -. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 515 617 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 515 617 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 662 AA; 73865 MW; B0949A61274CD5E3 CRC64; MKGEHGDVDE VMEAFGEEIW RGSEESSIFC DVFPALPDFP CMSSTSSSSS NPALNRQFVS SSASSGCSAS SSAVVKSDGN LRSVKYEVDV SPSALSSTDC MGVMEEFGYM DLIEDGNEGW DPSSIFRNDD ETNVGEELID QGGFKEEERV EEEMGLDELG VMFFEWLKTN KEHISAEDMK NIRFKKSTIE CAYKRMGSSK EGKKQLLKLI LEWVEQYQLQ KKRSREAAEA AAEAASSHQV PCLYQEPNPN PNPNSNFVNF MPTPGANACM WIPIPQSSSI DPPAVVPSGP APPAVAYYQP YPFVGGANVG PVNCQPYPPQ MPQPEYQMLE SPQLWPRSQF VLAPQYNSFP DQNGNFVPIA PHPVAPVYGE QYPSQVYNGS NSDRVVRLAP SATKEARQKR MARKRWGSFH RNQPHQNQIQ KTDSPEQISE KKLGAENFTN SINGQSSPVN WLYWPAVGPP KLAQPPMAAQ SQQPDQYQQG YPTFLPVKAQ SNRRPAQQQQ KKQGFKGEKN LKFLLQKVLK QSDVGCLGRI VLPKREAETQ LPQLEDRDGI QIVMEDIGTS KVWNLRYRYW PNNKSRMYVL ENTGEFVKEN GLQEGDFIVI YSDIKCGKYL IRGVKVRQPV KGKLEAKVTR KHHSNSGAGT DIPQNHSNSG AGTDIPPYTP SN // ID A0A166JGC6_DAUCA Unreviewed; 325 AA. AC A0A166JGC6; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN12135.1}; GN ORFNames=DCAR_004791 {ECO:0000313|EMBL:KZN12135.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN12135.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN12135.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN12135.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN12135.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN12135.1; -; Genomic_DNA. DR RefSeq; XP_017243638.1; XM_017388149.1. DR RefSeq; XP_017243645.1; XM_017388156.1. DR GeneID; 108215626; -. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 37265 MW; B1075234723C7E71 CRC64; MTSNNSNTNT YEEARKQRLL ENKKRIEELG ILKISKSLSD ITKSGKPQRR QPKPRATSIS ILEPRRSSRA RNIVSSYRDD IGVELPLMRK RSKFNSSWTS YLARPVDEVK SSTLEERNAA MKSAEKIQCS QQSKFPSFIK SMVRSHVYSC FWLGLPTWFC EDHLPKSDGN TEIVLEDESG AEYEAVYISK RTGLSGGWRA FALDHKLDDG DALVFELTEP TRFKVYIVRA CDDPGKEEML EVTEEEKISK EVPKEIMAKT NRKTESKKGS NSVLVSGRKW KCDESSLEND NTLEIREELK SLKEIKAEDK KKPIRVSSRK RSSRQ // ID A0A166JGH0_DAUCA Unreviewed; 845 AA. AC A0A166JGH0; DT 06-JUL-2016, integrated into UniProtKB/TrEMBL. DT 06-JUL-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZN12139.1}; GN ORFNames=DCAR_004795 {ECO:0000313|EMBL:KZN12139.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN12139.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZN12139.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZN12139.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZN12139.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000001; KZN12139.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 315 416 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 553 603 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 315 416 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 845 AA; 93101 MW; E0282FFEAE7CE9CC CRC64; MESSNNNNNT CMNEACRATT SSGEWKKGWV LKSGGLAALC YNCGSAYENL IFCDTFHREE SGWRECKFCG KHIHCGCIAS KSLHDYLDSG GVGCLSCIKF SETQLIRQIQ NPSDDIFGGL GTLAAICDPQ SSVIENYMEG KIVTKGKLTK PSKSMEGSQS NGHDLFLQSQ QGEQNLSSVP TKKEVNMLPK GEVGTGVSHV SQHSNKLTIV SKPDATPQPQ GPKDMYESLA QPSLNFSFGA HLSTSNSMRP LPGEGVEGRD KNKVPPFQQG QRSRQILPKS SKPGIVIRAQ GSNGTASQTR VARPPVEGRG RMPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPINQSEGV PIRMKDIKGK EWTFQFRFWP NNNSRMYVLE GVTPCIQNMQ LQAGDTVTFS RIDPEGMLVM GCRKAANSGD NRDMQDSSTP SLPNGGGIAD DLVSAVKVDQ PTDAFDWMRK EEQRGQINGE STQQQMGQPE KKKSRIIGSK SKRLLMRNED ANELQITWEE AQELLRPSPS AKPTIVLVDN HEFEEYDDPP VFGKKTIFTA RESGEQEQWA QCDNCSKWRR LPADVLLPAN WICSDNIWDS NRCSCSAPDE MDPKKLENCF RDTKKKKLLE NGQECEPSRL DALASAAVFG DPTEDSGEPS LVTTTRHPRH RPGCTCIVCI QPPSGKGKHK PTCICNVCMT VKRRFKTLML RKKKRQEREA EINREKTQIP LRSESEVDGT SEYALLHVNG SETDKERSVV KVDLALSSNK GDLDLNCDPN REDDSQIAEA TGTSLASFVP VASLTSDICT GGDSVPPTLG ACLISQAVDE NEEHLPEETN VTSMDVEEEQ GDEEF // ID A0A175YA58_DAUCA Unreviewed; 231 AA. AC A0A175YA58; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM80307.1}; GN ORFNames=DCAR_031897 {ECO:0000313|EMBL:KZM80307.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM80307.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM80307.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM80307.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM80307.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000732; KZM80307.1; -; Genomic_DNA. DR RefSeq; XP_017228470.1; XM_017372981.1. DR GeneID; 108192231; -. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 220 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 231 AA; 26664 MW; FB5C1884B977C999 CRC64; MNMKIDTMKS PNEIPEESRK RRLEDLDAGS LRLSTPSCYT NCDAAVFEKP ENSTFDSALN IRIAKNISGF RSYTHEEEAR ERFLGVSTKL KLWIDGSEGN DPWKIKKTLK HSDCDRLYRL TLCKDMVQNH IIKVWEEAGK VDEIEKVVSD EGVAVKVWDY EREREYELKL KKQSSSKSYV VSGAWRKEFV KERRLKKGDI IGLYWCTSKS RFVFSVLARA PPVAVSERGG E // ID A0A175YAP4_DAUCA Unreviewed; 408 AA. AC A0A175YAP4; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM80629.1}; GN ORFNames=DCAR_031903 {ECO:0000313|EMBL:KZM80629.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM80629.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM80629.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM80629.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM80629.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000074; KZM80629.1; -; Genomic_DNA. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 149 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 373 408 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 149 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 373 408 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 45903 MW; 317B018A5951B635 CRC64; MASSTSRSFF NFSDIEVDKL CGTMFSNVYN SGLHVYDLLI SSSHLLQKDH TKILNRYACK QLGLLEEMKS VTLFFKNMSW VVNLKWDNGK AYMDRTWYDF ARASRLKEGD ICAFMLSGPP GKFRVCVYEP DLLTKCNEKG IGHASKVTNW FKIVNDVVLY AGQMEIPRVF MEMNGGVLEE TVNLIMGDGR SVAVNFSRSQ SYLHGLKTLV DNYSIMLNDV MVFHFLSDST FAVSLFKATG MEYKLNSSHD AATKKTGGIR EEEVIILSDS SGEEGEPDLG MDIDGGIADA QNLELANDGN NEGNEFGDGN PLNMSFRVTL KKSHVDKRDH GAYCPRILYS IYKNWTKTTA IRLISEARTC YVCVLRRGNI CRFGKGWSYF TKANEFVGGE TIEFHYVGEN TFQVDVVA // ID A0A175YAS9_DAUCA Unreviewed; 290 AA. AC A0A175YAS9; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM80527.1}; GN ORFNames=DCAR_032196 {ECO:0000313|EMBL:KZM80527.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM80527.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM80527.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM80527.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM80527.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000153; KZM80527.1; -; Genomic_DNA. DR RefSeq; XP_017228744.1; XM_017373255.1. DR GeneID; 108192420; -. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 181 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 181 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 33063 MW; 9099EF140A121DB3 CRC64; MESQYDLGMI GWLVCTVILG GLATVYGFLK KANKNYWSSS SSCFSLGEIV WTIRSVFKNL THVVDSCSCC SHGVNSDCVD FQFSSWEERI ISAKKRERKV GYFLKNIGSN KYTLAVIGKQ SIVGHMSYDV YGSFARNHAS HLPPRQDLKW NTKREVVDWL STLITVPNTE VVQQVQYAKE GNSFFKVLIG EFKDSLNVPA TYMQQYNSIK NGAMRLRNGE NEWEVEVDGR VIKSGWNKFV KDHKLCEGDF LVFTALGEMF FNVAIFGQNG RIKEYPWFHA FNPDGRVVYA // ID A0A175YB19_DAUCA Unreviewed; 472 AA. AC A0A175YB19; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM80779.1}; GN ORFNames=DCAR_031645 {ECO:0000313|EMBL:KZM80779.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM80779.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM80779.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM80779.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM80779.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000030; KZM80779.1; -; Genomic_DNA. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 154 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 370 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 472 AA; 54225 MW; AFE96D01ED84A045 CRC64; MEVNLAPKRR KIKSNSDIKT EICLQLVRLN RKKRWQNGWV LKHVNAEKVR QTLRERIEAD YNWFAPRRCQ TFRETVELGG SESMVSTERV EDQKTKALIM FNAEHGQGPY YEMEITGTCL CKDSKTQQIK EDMRGLYGKW LQGDIISIKL QETEWRIEII KTGEVFNFGP GWFKFCEEAA LKEGDRLVLR TYDDPLEVFA CVFKHEDMQL IQESLGKEET GVSFFQYGND LLIRDGVMIS PVVVTKYYEE ILQTVERVLC GDREWQLGYC KHNKTLTGFL PIVREYAVTA ADTIFFSVTP GGESSVKIFQ NDGMEIKYTD FVVGKEIAPE ARYSREKERD IEVIVISDED GSVENEAVCS GLSFAEVLQS SHVDGRSHGV IRSYMYISKS MESAAKNWNT STVLTFNKGS SSWPIGITKT NNRIHFSRGW NAFVRDNDLK KGDTVNFTLG EDGTSFETTI KFSKKREDKD QE // ID A0A175YBD9_DAUCA Unreviewed; 136 AA. AC A0A175YBD9; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM80757.1}; GN ORFNames=DCAR_031668 {ECO:0000313|EMBL:KZM80757.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM80757.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM80757.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM80757.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM80757.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000032; KZM80757.1; -; Genomic_DNA. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 136 AA; 15322 MW; 5DAF273E5D48FF36 CRC64; MDYMWFNIDV DTDMLVDEAP MHGEQHGHAL VFTKIMQASR VDGRSHGVYL GKSLESAARD WKAGTTVMFN KGRNLWPIGV SGTNNRIRFS KGWNAFVQEN DLKVGDCVTF TLQADGLSFE IDVKYAKTKR GMKSKT // ID A0A175YBE8_DAUCA Unreviewed; 224 AA. AC A0A175YBE8; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM80919.1}; GN ORFNames=DCAR_031503 {ECO:0000313|EMBL:KZM80919.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM80919.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM80919.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM80919.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM80919.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000023; KZM80919.1; -; Genomic_DNA. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 166 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 25732 MW; 847820398E4C3118 CRC64; MQQDNLSGSW ILSIRNGYQI HVVYDRQSMK LLGVSDLFSD FGLIGGEILL FESVDLRVFN VYIMGEDGCE IQYPEVVHSS QICCPVPVLI SDGGWKFVNF ISLAFPTEDK VVSSLASTLR QCLHFKIEVM PSHMLRYCHG VCVPTQFQPL TASWKKKDKI RVYRGGMSWE FEIRKRRPGN QTAIHGGWIE FRQEIELKVG DCCFFWCLDE SNHHFRLEIV KSSG // ID A0A175YBP7_DAUCA Unreviewed; 699 AA. AC A0A175YBP7; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 12-APR-2017, entry version 5. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM80935.1}; GN ORFNames=DCAR_031474 {ECO:0000313|EMBL:KZM80935.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM80935.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM80935.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM80935.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM80935.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000022; KZM80935.1; -; Genomic_DNA. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 3. DR Gene3D; 3.30.420.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012337; RNaseH-like_dom. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 265 348 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 699 AA; 80526 MW; 4874962F9C099AF1 CRC64; MTTIVRKVSM PLSKSSRRKA FICRIVEDVN KKLLLKFPSE FAVYFSSLGL NNIGLHVPLK KTWLGRFVKC VGGTEFTVQI FNEYAVEVDY TNTAEIGQHK LHPSRIRASV MEPLSAMSEL KKDKLQSIFC YNACSAFDGE LEIVIDAKHL EDNELIETLS LKFCNMHGNI LQGKWILTIS NGYRMHVVYD RENHRLLGIT KLFFDFGIVG GEVLTFEFVD GSNFNVHIFG EDGNEMHYNS NGHETEDSSP QTGTLFLTLR YPCEFEVRVM PSYMLKNCPG VTISVDFMRV TNQWKNNDKI SIYKGHFSWE FEIRKCRTAN RTTINNGWKN FRKDMNLDVG DFWSIQIINK RIIELWSMLM GLRCCLYAGK HKVILETEFG DAVREWEGWR NFIDPTHAEL IRSLVHRTDD ERLKLEICVV KQSRNQLARY LAEDGAVNRT MPKLPVQFCS KYSEVLYESM ELKLRNGYIM RVQLDLVKGE VKGFLWFFKD MELSGGELLL FEYFGRFSFN VYIIGDNGAE ISYPDRVHCL QLCLPSVVSV GDGGWRFFST RVSGESILDE IDAPAEFIER CGLFLPERIT YVLSNGKKFD GSYNSQNSRF SGLSKMSNIV GVDTMYVVRN LLLTYDVFKM ISISAFDLER NEAVFPGTPL CMDASGSYPL LNNYFQITVE KKHMSDDCFA VEISNEYNDL SIEWDNFQF // ID A0A175YCS9_DAUCA Unreviewed; 456 AA. AC A0A175YCS9; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81416.1}; GN ORFNames=DCAR_029029 {ECO:0000313|EMBL:KZM81416.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81416.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81416.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81416.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81416.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81416.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 399 447 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 456 AA; 51033 MW; 53F993DCDEFD1AAB CRC64; MSEEKSLKAL MAIPQDQPSS KNNKALDPKK NNFKNRDGDG IQASKHKKVV SFNLDKSIVS YQPKIGASDS QGFHLNISSP VDRALDIKAN LASNFPSFVK KMLTSHVAGC FWLGLPKKFT EMYLPKEDVI VVLVDESEGE HETKYLAEKS GLSGGWRGFS VAHNLQENDV LVFHLIQEFR FKVYIVRANA LSEVDGATDL LNLGACERKT ESDDHQEGMK TTALAPEEHL KQYSRVHNAQ EKDMVALSNN IDAAVDNSGM NFDNSGSDDL YGLWIASSVT NFKDVKNFEN FSVTVDRIIL DNEIPHDRRV KYYQLCCSQK SYLHDQLIEM LSLHLVVGII LETVSISDAI SSSKPSSYRD LKAWDDTLKS FEILGMKVGF LRAKIVKLLT LSSDSEDALQ CKIVEKANAE GELKALEIRR SSLKEVIENL AHEIEAMKIK AQNIEAAFQE ESKAPW // ID A0A175YCU3_DAUCA Unreviewed; 165 AA. AC A0A175YCU3; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81434.1}; GN ORFNames=DCAR_029047 {ECO:0000313|EMBL:KZM81434.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81434.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81434.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81434.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81434.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81434.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 165 AA; 19805 MW; 68EC1EF909F6567F CRC64; MASRKLKKIP EFFKPFVAED RERRLLIRPF FSEIMKDRLP NNAFIRDRKE NFWPVEVLQR EKKKFFEAGW TKFVQDKNVQ YGDFLVFEYD GGSFFDVRIF GVTACEKEFS VEGFEADEME EEEDEKGENY VDEEGHDKEM EDEEDEHKAD NRVEMDDDEL ALLEN // ID A0A175YD99_DAUCA Unreviewed; 446 AA. AC A0A175YD99; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81417.1}; GN ORFNames=DCAR_029030 {ECO:0000313|EMBL:KZM81417.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81417.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81417.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81417.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81417.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81417.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 397 441 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 446 AA; 50078 MW; E28C13646FB5FAB9 CRC64; MSEEKSSKAL TPIPQAQPSS KNNKALEPKK KIFKNRDGDG LHASKHKKVV SFDLDKQIVS YQPKAEASDS RGSDPKVSSP MDRAREIQAN LASNFPSFVK KMLTSHVAGC FRLGLPKKFT RRHLPKQDVT VVLVDESEGE HKTKYLAEKS GLSGGWRGFS VAHNLQEKDV LVFHLIQECR FKVYIVRANS LSEVDGAIDL LNLCACERKT GSDHHEEGLK MTAVAPEEHL KQYSLVHSAQ EKDMVALSYN VDVAADNSGM NSDNSGSDDF YGLWIAHSVT DFKDVKDFEN FSITVDRIIL DNQIPHDRRE KYYELCCSQN SYLHDQLIDE KLSLHLVVGI ILETVSISDA INSSKPGSYK DLKAWDNTLK SFEILGMKVG FLRAKIDKLL TLSSESEDAL QRKIVEKAKA KEELKALEIR RSSLKEVIEN LAHEIEAIKI KAQTEH // ID A0A175YDU0_DAUCA Unreviewed; 217 AA. AC A0A175YDU0; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81806.1}; GN ORFNames=DCAR_029419 {ECO:0000313|EMBL:KZM81806.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81806.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81806.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81806.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81806.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81806.1; -; Genomic_DNA. DR RefSeq; XP_017226152.1; XM_017370663.1. DR GeneID; 108202273; -. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 24752 MW; 43CBE02C20D04836 CRC64; MKALTEANIY DASPEFRIIF FPAQSSDHLK IPPTFNKKLE GVFPSDYLLE SSGKTWHVTV KEVHDNLLQL ENGWPEFVKD SALAEGDFLV FSYIGNLKFH VGIWDKNGCR RKIQDSNAGE IQNICNTFQV NIRPAYLTYV NIPRDLAKLL NKKTKCTLKI AEDSWVVNFT GDVNDKPRFG GGLRQFCMDN EVKADDILTF QLISEHDNSF TVDISRK // ID A0A175YE19_DAUCA Unreviewed; 435 AA. AC A0A175YE19; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81418.1}; GN ORFNames=DCAR_029031 {ECO:0000313|EMBL:KZM81418.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81418.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81418.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81418.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81418.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81418.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 371 426 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 435 AA; 49232 MW; 55739291216FC149 CRC64; MQNNKALDTK KKILKNREHK TTVSSDLDKG IAPKVETGDG HEFDGEKSSP MDRALEIQAN LASKFPSFVK NMLPSHVAGG FWLGLPKKFS EMHLPKHDKT VVLVDETELE HETKYLAEKT GLSGGWRGFS IAHKLKEKDV LVFHLIQECK FKVYIVRANA LSEIDGAISL LNLGARVTKM NGVSAFDMNL KNLYEEGLKI TVMAPEEHFN QYSPVHSVQE KDMVALRNNV DAAADNYKMD TDNSGSDDVD GIRFAHSVVD FKDVKGYENF SIIVDRLIID CEIPHDLRVK YYELCCSQNS YLHDELIDGL NLRLVVGVIF EIISIADAIR SSKTRKCEDL KAWDNSLKAF EILGMKVGFL RARINKLLIL SSDLEDALKR KIVEKAKAEE ELEVLEIKRS RVKELIENSD YEIQAMKKKS KNLEAAFLEE SQAPW // ID A0A175YE96_DAUCA Unreviewed; 545 AA. AC A0A175YE96; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81162.1}; GN ORFNames=DCAR_031280 {ECO:0000313|EMBL:KZM81162.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81162.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81162.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81162.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81162.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000015; KZM81162.1; -; Genomic_DNA. DR Proteomes; UP000077755; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 209 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 303 353 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 442 536 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 209 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 303 353 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 442 536 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 62394 MW; 125FB37457EF0382 CRC64; MDYSDHSSEE YSSDDSLYGE IDGKSTEKRS QARIKARTVP YGFHDRHGRY KHPKIKLLCT EGFKYKCRYD REEGKIVGLQ RFFRDHWVTQ NSIITFQWPG GRSFLVRIYK PTGIEADYNW FNPRKCQSFK DSFDINDPKY SSGGGMVEEE KAKALLMFNG KREQVGMYEM VVTESCLEKN NKTLEIKGHM QEMCEQWNSG DVIKIKFVNK VWKIEITKKE GVTFFDPGWF EFCDEAALMA GDTLVLRTCK ERLELLACVL KMTELQLIEK SIGCDQTGIS FLQFGHDLLI NDGVMVDTVL CGGREWQVKY SKDTKMLSGL LPIMREYEVK IRDTIFFTVA RDGESVVKIF RRDGTEIRYC KAVVEDGKVQ EPFLQREEVS HVEVIDVSDD EAPMDIETDD HAHVVTEIMQ ASHVDGRSHG VDVSDDEAPM DIETDHHALV FTELMQASHV DGRSHGVYLG KSLESAARDW KSGMTVIFNK GRNSWPIGVI ETNNRIRFSK GWNAFFRDND LGVGDSVTFT LQPDVLSFEI AIKYADKKGG MKNNV // ID A0A175YEP2_DAUCA Unreviewed; 146 AA. AC A0A175YEP2; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81953.1}; GN ORFNames=DCAR_029566 {ECO:0000313|EMBL:KZM81953.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81953.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81953.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81953.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81953.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81953.1; -; Genomic_DNA. DR RefSeq; XP_017226173.1; XM_017370684.1. DR GeneID; 108202295; -. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16667 MW; 936BD5259673991F CRC64; MDSLQNDPDD IEASEDEFWP LSDKPNFNLV VKKTQLKPQY TLYVPAKMSN ELPTSDVPVV LTYRGKKWKT RSFVYPRGDH TLRTSIRWRE FVIDNNLQEG DACVFELAEC SESLMEIKVQ ILRGDFPSQL LLASADGTTA DKPIVL // ID A0A175YF33_DAUCA Unreviewed; 231 AA. AC A0A175YF33; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM82274.1}; GN ORFNames=DCAR_029842 {ECO:0000313|EMBL:KZM82274.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM82274.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM82274.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM82274.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM82274.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM82274.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 231 AA; 26636 MW; 8CFE59AC4282F018 CRC64; MDYATFVPDF FKYITPDDCS SNDLFLPEKF CDMQQDNLKE NCILTIRNGY KMHVPYDRNN RKFGEMGALF RDFGLAGGEV LIFELVDGRN FNLYIVGEDG NEIDYSAIPQ SCQASSSCGV STYSTGWKFV KFITNAHPTD DEVTIPVEFK SLTDQWKKKD IIMVYKGRFS WKLEIKKARE GNRTSIKGGF IQFRNALQLD VGDCCFFRWI NESYNEFRVE IVKAAFIAHA E // ID A0A175YFB2_DAUCA Unreviewed; 142 AA. AC A0A175YFB2; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81950.1}; GN ORFNames=DCAR_029563 {ECO:0000313|EMBL:KZM81950.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81950.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81950.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81950.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81950.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81950.1; -; Genomic_DNA. DR RefSeq; XP_017225909.1; XM_017370420.1. DR RefSeq; XP_017225910.1; XM_017370421.1. DR GeneID; 108202050; -. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 142 AA; 16343 MW; D321BFF54D0D29D6 CRC64; MDSSLDVPNH ITASEDEFWP LSDKPWFNVI LKSTHMRPTY TLYVPTEEFG VSPSSSVDVV FTYLGKEWKT VVRREGCSSR TSIKWREFVT DNHLKEGDAC VFELTERSDK LIKVRVQILR GDFPYELLNS VDGGTRDQPI IL // ID A0A175YFX9_DAUCA Unreviewed; 363 AA. AC A0A175YFX9; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM82509.1}; GN ORFNames=DCAR_030078 {ECO:0000313|EMBL:KZM82509.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM82509.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM82509.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM82509.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM82509.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM82509.1; -; Genomic_DNA. DR RefSeq; XP_017223972.1; XM_017368483.1. DR GeneID; 108200360; -. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 128 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 193 296 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 128 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 193 296 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 363 AA; 41037 MW; 7C66D43E8DFE8F1F CRC64; MDTSCIDDQS TTSTDSFPPP QTSPPCLIFD IEKSPEGLSR MGSGTSVILD SENNNSSNNN SLEAESRKLP SSKFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNLENEAASA YDIAAQRFRG RDAVTNFKPL SETENDDHES RFLNSHSKAE IVDMLRKHTY NDELHQSKRN NMFVNDVISL SCEKNVATRE NLFEKTVTPS DVGKLNRLVI PKQHAEKHFP IQNGAISKGI LLNFEDFNGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKGL KAGDVVSFMK STGPDQQLFI DWKERNGPGL GHEAVGFAPV RMVRLFGINI VTAVNINNKV VIEEVDSCNK KRMREMEILG LECGKKQRII DVV // ID A0A175YGK0_DAUCA Unreviewed; 146 AA. AC A0A175YGK0; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM81952.1}; GN ORFNames=DCAR_029565 {ECO:0000313|EMBL:KZM81952.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM81952.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM81952.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM81952.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM81952.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM81952.1; -; Genomic_DNA. DR RefSeq; XP_017225892.1; XM_017370403.1. DR RefSeq; XP_017225893.1; XM_017370404.1. DR GeneID; 108202036; -. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16537 MW; BD02C1A87ECB07B3 CRC64; MDSFQNDPCD VEGSEDEFWP LSGKPYFSMV LKKSHVKQYT LSIPAKVTKL LPPVDVPVIF TYCGKKWETL YTIVPREGRG HSLRTSIRWR KFVTDNNLKE GDACVFELSE CSNTLVKIRV QILRGDFPSQ LLNGVSGLTS NNPIII // ID A0A175YHI2_DAUCA Unreviewed; 212 AA. AC A0A175YHI2; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM82631.1}; GN ORFNames=DCAR_030200 {ECO:0000313|EMBL:KZM82631.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM82631.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM82631.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM82631.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM82631.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000009; KZM82631.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 24048 MW; 36E04C4675F336A4 CRC64; MDSDLKVPFM FLKALIFFPR GTLPDKLKLS EDLIEKFGSK LRSGIRFLLS DGSLISGSFD IVNGTIRGLQ KVYRFYDVSI GDILLFTYTG GDMFVVHAFG KDCMPKPSCK DAGLFFEVEI KQSHLQDYDF GVTIPVKFKN ATKNVVEGEA LKIRHGLKSW NVVLKKRTNR VELLSGWSVL WKDLELMTGD ICVFNNAGSK RKFNLEVYRK SV // ID A0A175YK93_DAUCA Unreviewed; 586 AA. AC A0A175YK93; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM83660.1}; GN ORFNames=DCAR_028918 {ECO:0000313|EMBL:KZM83660.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM83660.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM83660.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM83660.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM83660.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000008; KZM83660.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 256 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 256 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 586 AA; 64311 MW; 45D5691E0FFB1BD9 CRC64; MASQICMNSL CGAPILNSSS RLGWPLRSGA AFAILCHNCG TLYDQLAFCD VFHSDHTGWR DCISCGKRLH CGCIASTSLL EILDTSGVIC IRCAKTSPIQ PPQFISDDNG LKQFLPPQNH NTSRSMPPSG DTRNKCLSKY TQLSAGCGSP LDVKTKTDKK TPEVEDVYGS PVQTDLTISL ATESITTHSL PITASKPVLT AGLDPNARTM SQMRVARLPV EGRIKSQLLP RYWPRITEQE LQQISGDSNS TIVPLFEKIL SASDAGRIGR LVLPKACAEA YFPPISQPEG IPVRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM KLQAGDTVTF SRMDPEGKLL MGFRKASNNI IMQDSHSTGK HNGSFASEPF SSSDVDNLPL RNGYSGLLQS MNGSTDSHLK AFSKHFSPSS EDAWHFTDKH GGRGMIGSLA PTLLAPERKR SKKIGSTSKR LLIDNQDALE LKLTWDEIQE MLHPPASMQP TTVTIEDHEF EEYELGEGSL IDNVLWSHKV GPRPPLKVYG RHLFWERGAF LLPGHLGSKS NGRHAIAALS GEGCHLISFS LPYGDVRTMC GITAGK // ID A0A175YLJ4_DAUCA Unreviewed; 1002 AA. AC A0A175YLJ4; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 12-APR-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM84455.1}; GN ORFNames=DCAR_028123 {ECO:0000313|EMBL:KZM84455.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM84455.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM84455.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM84455.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM84455.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000008; KZM84455.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 723 773 CW-type. {ECO:0000259|PROSITE:PS51050}. SQ SEQUENCE 1002 AA; 110523 MW; DC4F702927AE44A8 CRC64; MSLPVRVCNF YIYILSVSDC NQEEVVEGNV YVFQNFQVRD STGKLKPVST KLCIRLLSST TIEEQSNDHL IPRYKFEFMD FGDINEESKK VVGDENPEYA IDNVSVGTLP STRVFFNLDI EPVVEFRNRF RILVLADDKT HACNVLLFDR IVKRLLGTTV TNILSEMKKS PDSGSVKEMY KRIIGKEISA KILLSEGNKS GESNIYEAVD LFDPTMLASS SGEKSPETNT SAFSHPGVVP GIELFQTPGS ASSVSKKIKT QIHCGCIVSF HMFVLLDAGG IECITCTKKS FILTPNPAWP PPSLLLPGLP ERIKDLSAKN WSSIAASGPV PWRQAPSLFN PELHPKMPSE FNIPTSKKLS DSMDKKENLV FSGRLMNGGL KGDASQISEN GSKCEDQQSP YVNDNPHSAI LKNEPSSPNP DLTLNTTSKS EIAEHSSISV SQAQPPAPLP AAANYNGVDS FGEGQAQIGR PQDRNQLLPR YWPKITEQEL QQISGDSNSV ITPLFEKVLT ASDAGKIGRL VLPKKCAEVY LPPISNPEGI PLPVQDLKGE EWVFQFRFWP NNNSRMYVLE GKKGPVNTRD KASAHGDSTA KKSKPGEVTA QHNSKRNSVS YSPLTMNKAN LADSGRKSNK VVENKCDAKV KPAAKPDIPI KRKNSILGSK SKRLRIENED MMELKLTWEQ AQGLFHPPPN NVPKIVLIDG CEIEEFEEPP IIGRPTIVAK NNLGEIIQWA QCEDCFKWRK VPGYAILPSR WTCSENLWDP KRSLCSADQE LTLDELEDLL PSAGAKKMKA EKEDPDSLEA LEGLDALANV AIQEDGDAYA SSSLHTTTTK HPRHRPGCSC IVCIQPPSGK GHKHKQTCTC NLCMTVKRRF KTLMLRREIK QSEKAETARQ KLQQPEQSGD DDIQMFCDAG NSSSSHNLVN GEGSNNDQSK KKLSNQLDLN IHPEREEDLS PVLNSGSITR MIQDGTGGPQ KVKKISRSGG NLVVSQPPPP EVGVENYSTD VA // ID A0A175YPD7_DAUCA Unreviewed; 318 AA. AC A0A175YPD7; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 12-APR-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM85001.1}; GN ORFNames=DCAR_027577 {ECO:0000313|EMBL:KZM85001.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM85001.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM85001.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM85001.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM85001.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000008; KZM85001.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 222 312 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 318 AA; 36732 MW; AA6BCCBC41AFA3AC CRC64; MEPEMRYPVD FLKALIFFPK GSLPQKLFLP RGFVDRFGGL LPEIVNIKTM DEQRFSIKFS AEDGCFFDMH ALLSKLLPKE CQFFYFKYLG GPNFEVFLLD VKYDLHGISG IASPFQCMFI RIYPNLSSKW EPLRLSEEFI SKYGSQIPRE IRFQVSDGSF LGGIYDKGDG TITGLQPVYK FYNLSFFEPL VFTYLGVDLF VVNAFGKDCM PKNVNSDSGD FFEVELKPSH LLEYDFGVTI PAKFKSLLSK IDCNGFIKIK HGNDSWNVLL KKRPNRVELH TGWTLLWKSL RLLPGDICVF RRAGSNFKFN CEVYRHHV // ID A0A175YPE1_DAUCA Unreviewed; 877 AA. AC A0A175YPE1; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=DCAR_027886 {ECO:0000313|EMBL:KZM84692.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM84692.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM84692.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM84692.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM84692.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000008; KZM84692.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 744 828 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 877 AA; 96688 MW; F1361F04D72621E9 CRC64; MRLSTASFSQ QSPEGEKSCS NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVVASTNKE VDAHIPNYPS LPPQLICQLH NITMHADAET DEVYAQMTLQ PLSPDEQKEA FLPVDLGAPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHENEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VLFIWNEKNQ LFLGIRRAIR PQTVMPSSVL SCDSMHLGLL AAAAHAATTK SRFTIFYNPR ACPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP FRLKRPWPAG LPSFNGNHVS GLHNYNCHLY SVPCAGMKES VLGMNSPHMW LQGDNGDRGF QSLNFQGIGV TPWMQPRVDA SVLGMQTADI YQTMAAAALQ EMRAVDTSKN PIPSVLQFQQ SQSVPHRSSS GLLHTQMLQQ SQPEASFLYC GGETQSQAQS FGPLLSHSAS QAQTPSLQTM NTMQHQSFSD SNGKPVTSSV VSPLNNLAGS YSNDENTQLF NCSRSSGLLT SEGWPPKRVA VDPVSSFGAS HSVLPQIDQL GSLHTNITQH AFSLPPYPGR DCSINQDGDN DPQNCLRFGV NIDSTPLFMQ NGISGLRGVG SDGDSTTIPF TSSNYMSTAG ADFSLNPSVT ASSCIDEPNF LQSPENLGQE STPATFVKVY KSGSFGRSLD IAKFSSYIEL RSELAHMFGL EGDLEDPLRS GWQLVFVDRE NDVLLLGDDP WPEFVNSVWC IKILSLQEMQ QMGKLGLELL NSVPVHRLSS NNCENYPSQQ GSKNLSNGIA SMGAHDY // ID A0A175YRS1_DAUCA Unreviewed; 186 AA. AC A0A175YRS1; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KZM85861.1}; GN ORFNames=DCAR_026717 {ECO:0000313|EMBL:KZM85861.1}; OS Daucus carota subsp. sativus. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; OC Scandiceae; Daucinae; Daucus; Daucus sect. Daucus. OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM85861.1, ECO:0000313|Proteomes:UP000077755}; RN [1] {ECO:0000313|EMBL:KZM85861.1, ECO:0000313|Proteomes:UP000077755} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755}; RC TISSUE=Leaf {ECO:0000313|EMBL:KZM85861.1}; RX PubMed=27158781; DOI=10.1038/ng.3565; RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J., RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M., RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., RA Ashrafi H., Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.; RT "A high-quality carrot genome assembly provides new insights into RT carotenoid accumulation and asterid genome evolution."; RL Nat. Genet. 48:657-666(2016). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:KZM85861.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LNRQ01000008; KZM85861.1; -; Genomic_DNA. DR Proteomes; UP000077755; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077755}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000077755}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 186 AA; 20618 MW; A9609E9020536A9C CRC64; MIDHKSAVAA ELAASSRGSR EHLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQHGNKGVL LNFEDSGGKV WRFRYSSWTS SQSNVLTKGW NRFVKEKGLN AGDIVSFYRS NGVDRQLYIA TESGIGSGSG ENVESEVHPV QAVEPVRLFG VNIFRVPQVE VDNYGNRNRN IEISNSGKKI RVSNAL // ID A0A176VD87_MARPO Unreviewed; 2255 AA. AC A0A176VD87; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 07-JUN-2017, entry version 9. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:OAE18760.1}; GN ORFNames=AXG93_2396s1110 {ECO:0000313|EMBL:OAE18760.1}; OS Marchantia polymorpha subsp. polymorpha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; OC Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; OC Marchantia. OX NCBI_TaxID=1480153 {ECO:0000313|EMBL:OAE18760.1, ECO:0000313|Proteomes:UP000077202}; RN [1] {ECO:0000313|EMBL:OAE18760.1, ECO:0000313|Proteomes:UP000077202} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Whole gametophyte {ECO:0000313|EMBL:OAE18760.1}; RA Honkanen S., Jones V.A., Morieri G., Champion C., Hetherington A.J., RA Kelly S., Saint-Marcoux D., Proust H., Prescott H., Dolan L.; RT "Mechanisms controlling the formation of the plant cell surface in RT tip-growing cells are functionally conserved among land plants."; RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:OAE18760.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LVLJ01004011; OAE18760.1; -; Genomic_DNA. DR Proteomes; UP000077202; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 3. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 5. DR InterPro; IPR008395; Agenet-like_dom. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR025927; Potential_DNA-bd. DR Pfam; PF05641; Agenet; 1. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF13891; zf-C3Hc3H; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 4. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 4. DR PROSITE; PS51032; AP2_ERF; 4. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077202}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585222}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000077202}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}. FT DOMAIN 193 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 905 961 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 1281 1337 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 1680 1737 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 1874 1940 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DNA_BIND 193 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 905 961 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 1281 1337 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 1680 1737 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 1874 1940 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. SQ SEQUENCE 2255 AA; 246513 MW; 5171EE4EB0E76B72 CRC64; MFFNKFRLTK HDTVIDSTSP SRGRDFGPGD FVEVNGGLEV FRHAWVAAQI IRVEEMQGFS RYLISYDSYK DTLEHWLACE EPDANISEAF DYPHGGTIRP KPPKQLELAL HEGDTSLIPF KEVCVNDTVD AAIENAWWPG RIVKVMAKQT LTLIVEEDSK VTFRPYVGEG LLSPNRHMVT RLTKNMTTHV PSFARALVKR CLGPAGKLSF PVMFMKQFIK GREGVATLED AKGAKWEVEW AAWEQSGRRL ALTRGWPEFA ESHRAQIGDV LLIEILSRDH FKVRFINSKL RRAIRSRSHS KQAKCKNRAR PEKSRSDDDR KVKKTYGDTY SSKKLNGASQ PLRFEGGGEK TPSQSTQTAS TTLEESSASD KTLYEQGGKS GKEDDFEEWD LQRSSGYPSW RSLSQGHGSA SEMTSLSSIS RARTNFRKHS IRGGQCPLPW ASVTNGAQQT LSSPVRPPKS GSALPSKSPI SGRTRFHQVV SRPNSSTVVY CQSTKSKCSQ YCVQGHQFCL WHILEDPHAP YKQCDYVEAS SKDRCRFPVN LQIEDNRYCQ MHNNNHGFTL SPQTLKKQQG VERPPIGEFT LLVLAATVAN DVEVKEPPKI VRTVEANNYI QVRSISNDPK QVAMDIRKNS STAVITVSSK CAKANGPGFV NSSGDKCRVV EEQFLGRSCS TDEIIGELGA LSTFGQIRKE DLNGTLNISK RLKSDHTGLP GSTLDKNGLV CQRTAANAEQ ISASKGRSPS TGAGLSEVLT LIPGGATSSS KSAIDGALPL SKKPIMGIEK VCRSNPLFAQ SSAVKKKSTL NNILCPIDIG QMDFSRVGLN CVPSRLSASS AITGPKETVV KSPLWFFRSV DLGEMDPTRM GLKCSFGETK AASKLTMPKR KQKEDTVGPE ASSDKLPGKR RFFSQYVGVR KRPWGAYGAE IRTPEGRRLW LGTFTTEEAA ARAYDHAARL YRGEGAMTNF NSVGYPVEPV DEKSGLKEAP KKRRSSNNKR KDDESASSPV GEGKRPKVQK AEAQSAGSGT PPTENFVHTE ASEAGKFGNF LVDQGNQNSE GGTSDTSLAA QQEKEGITSL QTPEGLSSAG CAHVPSTGED FEASRSAAGD RGVQTVDSEQ MKETKAKIGE EADLIVEHTD TSKIAELPED GYQATEHDMQ VDSIHAGSCG GNTVSRPSRQ KKFKRISTTV VHDSDSSSGN SSDERKECEE TSVKEEDATL SGEESPQSGS SRLELTEEEG VQVCTNISEP PVRNFAIREL VSPEKVRREF NFRGLRRVSS PRFEPIEKET NFTGVRKSAS GKYEASVYDR NKRKKVYVGM FNSDIEAARA RDQKAIDMGA ASTLNFPDMK KLQAKMQGDI HEEITRKGKA KDLAQWFTKQ RLGPGKGSKE NSQCKTIKDD FSEVPEKETS LGKSNKAPSS QMEKMQPRKE EGRGPEKNKV STEGKRAVSA DQPPVQKSSK ESKSSIKVAG SKSVPPESSL PSSKIVTKKA VPSVLESEKE LTTTKIATKK GSSSANRSSK KPSPASGEAT KAQQDGGETH QPVKRAPRGD FLSRIGADCY IESEYARVYK TTSKRRAMLD KSGTNQAAAA AAAAAAASDK DSTEQSKGSS QRSAPHQAKG NPSATDVSTP SKHKKDEIAD GDSIHNEDDD TTRSSGGNSS GAKSKRKEAD NSGVTNHSKS GKKKLLERTS YLGVQSTPSG RYKAKIYLPK VKKHLYVGMY DSAEVAARAY DEVAFTKRGE CVRLNFPEEV PLLRARLKEA TNEDAVKSKK NEVPLKKSLI QRTNFGSYHA MLYDPGVKKY RFLGDFTSVK EATKACDAAF SSQWDDASAD PPDEEEDSDN EKLNTFSEKR PRTSYGGGSP RSTTRSLRSN ETSSPHDASE SAKQHDSKKP KQSEFKGVYC SGSKFQAIYY NPENKKPTYI GTYLTAPEAA YAYDQIAYER FGESAVLNFS MDEFPDQVDN GDVYSRQGSD TNRIGELNTL ASSALKREGT DSVEVDAIAT DFLKDLGMRK SLRRGKDLKS NLASGSIQGS HDGGSKGSGE KRRMSVREDA ESARDSTGGD DEEADQRESS DTDNLPCTKT HWCLETEESG KKIHASYHNP VQKKSYSLGA FDSFEKAALA FEEKVNEELQ LSRAIVSAAE VRKASGKQTI ESKVTEPALL DSHFSTYEHD GTSSLTLQNT GASSGGEGPG AALDLDTGDD APEVALTMLS WASSKVAPLA AIDGKKVRKL NRPLDQGAPD DLALALDRRP AVLGVKAPEK TWLSL // ID A0A176VK00_MARPO Unreviewed; 922 AA. AC A0A176VK00; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AXG93_154s1460 {ECO:0000313|EMBL:OAE20672.1}; OS Marchantia polymorpha subsp. polymorpha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; OC Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; OC Marchantia. OX NCBI_TaxID=1480153 {ECO:0000313|EMBL:OAE20672.1, ECO:0000313|Proteomes:UP000077202}; RN [1] {ECO:0000313|EMBL:OAE20672.1, ECO:0000313|Proteomes:UP000077202} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Whole gametophyte {ECO:0000313|EMBL:OAE20672.1}; RA Honkanen S., Jones V.A., Morieri G., Champion C., Hetherington A.J., RA Kelly S., Saint-Marcoux D., Proust H., Prescott H., Dolan L.; RT "Mechanisms controlling the formation of the plant cell surface in RT tip-growing cells are functionally conserved among land plants."; RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:OAE20672.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LVLJ01003591; OAE20672.1; -; Genomic_DNA. DR Proteomes; UP000077202; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077202}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000077202}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 127 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 788 872 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 493 521 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 922 AA; 101723 MW; 91D9886667294E04 CRC64; MESDAIPKTE GQAMGEQRSL NSELWHACAG PLVSVPPVGS RVVYFPQGHS EQVAASTQKE ADVHISNYPS LPLRLNCLLD NVTLHADMET DEVYTRMTLL PMSGSPEKEL VIVPDITRDT KQPTDFFCKT LTASDTSTHG GFSIPRRAAE KVFPPLDYSQ QPPAHPAQEL VARDLHDQEW HFRHIYRGQP RRHLLTTGWS VFVSAKRLQA GDSVLFIRDD KGQLLLGIRR ANRQQTAMPS SVLTSDSMHI GVLAAANHAA ATNSRFTIFY NPRASPSEFV IPLAKYNKAI YHTQVSVGMR FRMVFETEES GVRRYMGTIT GIGDVDPLRW PSSHWRSLKV GWDESTAGER QRRVSLWEIE PLTTPFLICP PLTLRAKRPR ASSRGHSGMS GEDEEGDGSV KKSSMWLRDD ERDGLSNLPF RGLGMDPWTP RLPQSPDSVA PGTPTDFYRV MAAAALQEIR GNETSKQLLQ RQPQQSLQNH QMQFRPQQQQ PPLQQQEQQQ QQQQQQQQQQ QQLNMQQQQQ QVLQSPQPLP LPDVTGPLLQ LSSSRPQSPM QLSTLRASSG YTDSDVHLSP ASTASGSFPL QSLLSRTQQG SVLTTEDTNQ FSNLLRSNQS AMQQATMLPG SAMVGRDSPV SSAWYSMRDS TTSDCAHPSS RMGRADSSPS SAPTYALSSN EPCQSGLTAL PMQNPTYAVF RDNSQEQDQV QSDPRSHLLF GVSIDQMPNG AGGLGSRGFG KAKDNQARFA GGSLLPAPYC SSAGQDLPIS PGIISHGSIN DSQFMQRGFM APVSSPQRSY TKVYKLGSVG RSLDVAQFTN YTDLRVHLAR MFGLEGQLED PQRSGWQLVF VDNEQDVLLV GDDPWDEFVN CVRSIRILSP SEVMHMSQEG LELLNIVPPT APRPTSSGSE DGATMPAGFE KSCGNDAQRG CP // ID A0A176WDW1_MARPO Unreviewed; 914 AA. AC A0A176WDW1; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AXG93_1962s1260 {ECO:0000313|EMBL:OAE31269.1}; OS Marchantia polymorpha subsp. polymorpha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; OC Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; OC Marchantia. OX NCBI_TaxID=1480153 {ECO:0000313|EMBL:OAE31269.1, ECO:0000313|Proteomes:UP000077202}; RN [1] {ECO:0000313|EMBL:OAE31269.1, ECO:0000313|Proteomes:UP000077202} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Whole gametophyte {ECO:0000313|EMBL:OAE31269.1}; RA Honkanen S., Jones V.A., Morieri G., Champion C., Hetherington A.J., RA Kelly S., Saint-Marcoux D., Proust H., Prescott H., Dolan L.; RT "Mechanisms controlling the formation of the plant cell surface in RT tip-growing cells are functionally conserved among land plants."; RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:OAE31269.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LVLJ01001129; OAE31269.1; -; Genomic_DNA. DR Proteomes; UP000077202; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000077202}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000077202}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 757 840 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 914 AA; 100419 MW; 5F0F944FA28627E0 CRC64; MSEASSITRH PYKANTGPLL KFQQSSDASS LPPMARPMAS RQLATSHTAA SNVSVAGDDG IDAELWYACA GPQKALPPVG SVVAYLPQGH IEQVASFNNQ ELDAQIPRYN LPAVIPCMLN DIQLSADPDS DEVYATLTLC PMSEQHEDSS DCAEPPPPPK RKSRSFTKTL TVSDTSTHGG FSVPRRAADD CLPKLDMSLN PPNQELVAKD LHGNEWRFRH IFRGQPKRHL LTTGWSVFVS QKRLVAGDAV LFLRGENGQL RVGVRRAPRQ QQLQPKVLTS PTMHIGVLAA AAHAATEKSR FSLIYNPRSC PSEFVIPYSK YLKAVKSNFN VGQRFKMKFE SEDPSDRRHT GTITGICDFD PARWPGSEWR SLQVNWDESS SSERQERVSP WEVEPFSPST TITPSVSTRK RLRPVTQPHS ESAVNRNAVE TSKAQTQTMR LARAFHGGHE MLPSSAEEED AESLSAKMSW IKREDNFKSE AQSVGSRQGP DSWMSIRRPD PVQVPDMFRN LPASGVPDLR GMIGIERRQQ EHLKFCVKQY RENKDEISGT TLQLSSPRPP NLQNYVKSST DLNLSVSSPA SSNKGSSLLW SNSQSVTLPS YNGHESTNAS SWLSFRPGQS DVAASSPHCT TLSMSNLPPA DSETSSHPST PKSYLWEKRI RMEPDTNRAA APVQSEQKCK IFGVPLDKPT PIVIPSQVPG SKAVRSTDDG SGPSSSRGLE KVVSPSPTSS AVGGQEQDKG PQRSNKTSQN FQQGPVRSYT KIHKQGSFGR SIDVQSYDGY TDLLRKVENM FELNGELFDK KSGWQLVYTD HEDDVLLVGD DPWMEFVSCV RTLRLLSPGE ASSSGKSGQS HDEDAGAGKD GAKRQDVASS FVERFVGRME EGRGGGGTGG WMEGRKGGSK FSGESRSRWE RGEG // ID A0A176WH76_MARPO Unreviewed; 759 AA. AC A0A176WH76; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:OAE31655.1}; GN ORFNames=AXG93_3384s1290 {ECO:0000313|EMBL:OAE31655.1}; OS Marchantia polymorpha subsp. polymorpha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; OC Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; OC Marchantia. OX NCBI_TaxID=1480153 {ECO:0000313|EMBL:OAE31655.1, ECO:0000313|Proteomes:UP000077202}; RN [1] {ECO:0000313|EMBL:OAE31655.1, ECO:0000313|Proteomes:UP000077202} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Whole gametophyte {ECO:0000313|EMBL:OAE31655.1}; RA Honkanen S., Jones V.A., Morieri G., Champion C., Hetherington A.J., RA Kelly S., Saint-Marcoux D., Proust H., Prescott H., Dolan L.; RT "Mechanisms controlling the formation of the plant cell surface in RT tip-growing cells are functionally conserved among land plants."; RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:OAE31655.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LVLJ01000986; OAE31655.1; -; Genomic_DNA. DR Proteomes; UP000077202; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077202}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000077202}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 464 570 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 464 570 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 759 AA; 83746 MW; 740A721E0DC8DA2F CRC64; MSGTLNDVLM FTSRNRPATL EMSEDKDVED KDLNPIEWQL LRDGVNGTNS RPKPSDPDFR LPFGSSQKQH VMAPAAPQWD SARNSMDGRV VVNYLRSFGP GRSDSSTCSV EGQVRGIRRS LDGHLLSSMV NRDEVPDREE EFGTESQGLS SLILGQGVHS SAQLFGCGLV VQSAATKGQQ QVHRAPHFRN LFPEQSSSFS SVLTQESLPS DVNEHIHPQK KPRRYDFVEP LSQAEIDTIR LNEESHYRNS YPPRGAPLAD FIDAHHSYKI PAASFSTSLP DRPTFTSNIP LQNLSLSNYQ VSSPSVPLKS SSNDTSSART PLVDYSYSSV DTKLQNGMRS VARGGPLLSG GGGFKPLNLM DGPTQAAVSR DYLQSGSMGQ VCSIRPTSME TGSRAAWPAG FINFPPPTLE SSGCVIPGMS SRRSLLDLDH HHHHHHHHHH EMAAEEREVQ RVHPISESQL RLVIQKQLTT TDVGSLGRII LPKKEAETHL PHLPDKEGIE MCLYDHDVDR TWIMKYRFWP NNKSRMYLLE NTGEFAKYHG LQQGDLLLIY RQLPARYADH QKSTDLLCPD YTKCVEVLRV KKMAPPLRLV TPPQSISESG GAEDLVSGAA ETVSSRALTS SASSRTLNSS SAASKEVCGT DVPAFSYVEA ASSNRAQLLV VDGQSQNLGS LNKHQGKASS DDRNHNYMTV QGQSTASDHD PTELDGESVY NLEEFPSLIE AEEIIDIFPL DSDSSEAQLS PVESIQVVRK THHMRADLT // ID A0A176WKI8_MARPO Unreviewed; 582 AA. AC A0A176WKI8; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:OAE33131.1}; GN ORFNames=AXG93_4773s1040 {ECO:0000313|EMBL:OAE33131.1}; OS Marchantia polymorpha subsp. polymorpha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; OC Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; OC Marchantia. OX NCBI_TaxID=1480153 {ECO:0000313|EMBL:OAE33131.1, ECO:0000313|Proteomes:UP000077202}; RN [1] {ECO:0000313|EMBL:OAE33131.1, ECO:0000313|Proteomes:UP000077202} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Whole gametophyte {ECO:0000313|EMBL:OAE33131.1}; RA Honkanen S., Jones V.A., Morieri G., Champion C., Hetherington A.J., RA Kelly S., Saint-Marcoux D., Proust H., Prescott H., Dolan L.; RT "Mechanisms controlling the formation of the plant cell surface in RT tip-growing cells are functionally conserved among land plants."; RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:OAE33131.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LVLJ01000679; OAE33131.1; -; Genomic_DNA. DR Proteomes; UP000077202; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000077202}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000077202}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 142 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 264 291 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 582 AA; 65053 MW; 6824C3C91A489C2C CRC64; MVQRLNILSM ATDFRRDLEP ASGKLTYEEA RLKRIEDNKK RMEELGLKDQ LSLFTKSPSK TNTPRKAIKK NLQECAVEIR RSPRVTRKPS VNYYEKNRAE VEGTGCPRKR IGRVLKRGFI SPAARSEASV RASEIKTGHP SFVKAMLRSH TSGGFWLGLP SDFCITHFRK DELVILEDED GLEWETIYLH HKKGLSGGWR GFSIDHDLED GDAVVFELVK PTRFKVHITR AVGSKSLECT PNVALRSKSY RYALKENKEN EHVNSALHKV LKREQQETED AENRVSKRRA KLGAKSLKRK LDLSEDSACK YSVGDEPLHK KVIIEVSDSD NESPGDAGLK ERQKSSGRRI LRHRPPATKS VEKPVVPPLN VKISKGETQR NNKNGEEKNV HEPQRRKVTE AIQTPVVDKK KGVVLTKKVT EAIQTPVXTK KVTGATQTPV VDKKKGVVLT KKVTEAIQTP VVDKKKGVVL TKKVTEAIRT PVVDKKKGVV LTKKVTEAIQ PPFVDKKKGV VLTKKVRFAA VPKTSACATT KSSLKLPPGA KIKAWGVCSI ARNCNMSRKL PGTGTRKYSF FSPGKRPVAK AR // ID A0A176WMP6_MARPO Unreviewed; 1187 AA. AC A0A176WMP6; DT 07-SEP-2016, integrated into UniProtKB/TrEMBL. DT 07-SEP-2016, sequence version 1. DT 10-MAY-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:OAE34144.1}; GN ORFNames=AXG93_1593s1020 {ECO:0000313|EMBL:OAE34144.1}; OS Marchantia polymorpha subsp. polymorpha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; OC Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; OC Marchantia. OX NCBI_TaxID=1480153 {ECO:0000313|EMBL:OAE34144.1, ECO:0000313|Proteomes:UP000077202}; RN [1] {ECO:0000313|EMBL:OAE34144.1, ECO:0000313|Proteomes:UP000077202} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Whole gametophyte {ECO:0000313|EMBL:OAE34144.1}; RA Honkanen S., Jones V.A., Morieri G., Champion C., Hetherington A.J., RA Kelly S., Saint-Marcoux D., Proust H., Prescott H., Dolan L.; RT "Mechanisms controlling the formation of the plant cell surface in RT tip-growing cells are functionally conserved among land plants."; RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:OAE34144.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; LVLJ01000445; OAE34144.1; -; Genomic_DNA. DR Proteomes; UP000077202; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000077202}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000077202}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 402 503 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 662 712 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 402 503 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1187 AA; 127007 MW; B924F577BB14B902 CRC64; MLNSCIGSRI AYWLLCCGLC STKGVFARLF TPMMQRVHCG CIASLYSFVL LDAGGVECFS CATKTAPALP LKHLQHSVVP PAPQPQRVDP LAARGWSETF GARAARNIEV GTTWQPYSSA WYPPNTAGFP IVRLQAELDR PVEGSHAEPT LKGLVIRNED AYPESKFPPT KDSSASAEHP RGDSPDGELH AVESSPTCFS RDPGAVGPDN VQGDCDGESL RVGVATSIGL ENIIGSSGKV GVDVTRVITG KSLFPTQDLL NAGPSTGLSM SIGTSARKEG AGEGSQQGGI LGPAGALTTP AGAGSSGVSA ESRDLASKFT GLSPYRSRHR QLLPRPYHAG TASPNSNAEV KSNEAGSVRV ARPPGQGRGR NQLLPRYWPR ITDQELQQIT SGDSNATITP LFEKMLSASD AGRIGRLVLP KACAEAYFPA ISQPEGLPMK IQDITGKEWL FQFRFWPNNN SRMYVLEGVT PCIQSMQLLA GDTVTFSRLD PEGKLVMGYR RAPALLTSQD PKTATRGTSA NVSKGLSCGS IDGLYASTGA SLLSVSANAE ARNKSGQSDV SDSGYGWSKA EKGMGKEGSM LEALSQVDRK QRGRPLGGKS KRLRLENEDS LELKNSWEEA QELLRPPPSV VPSIVTIEGH EFEEYEEPPI FTKRTIFTSR QSGEQDQWAQ CDECGSWRRV PPEVLVTARW TCTDNTWDHK RAMCSAPQEL SNDDVDHLLG LIPGEGRTCV KSPFFSTRSV VWGFSGYCRR FWVEVLGEGV GVLSQVQGVE LTSGVDRVAH LSHSVYLDGS HEHDLAGPDG QNALRTDEAR VAEGVDQLQL PVLGEGLGVG RESGGVPTVV KSPGNSPVKY DGVAPEKWPK YRLGSVRKGP IENLSDHLEF AIPEKNDTKA VGSGPMVVET SAGLDALAIA AAMGETGRVS TSPSSPARTT KHPRHRPGCT CIVCIQPPSG KGPKHKQNCL CNVCVTVKRR FKTLMLRRKK RLSEREAEGY VRRKRKDDVE VSSSSKLVTD AGSLADGGSR HESSGGGTVV EGPRRDDALV ADISNSSGLT AFGLSFPSTN AGEDALVSKG QIDLNSQPER EEEPTKLGRV SMKQLLQDAS QPLDTYLKQQ GMTSLFGSQA AETSGAVGHC GGNSEKKSDE QSSSQCQDHS NEEASQTSAR IQGDSAGIPN QAGAQTQARM QGLCSWI // ID A0A194YGL8_SORBI Unreviewed; 205 AA. AC A0A194YGL8; DT 05-OCT-2016, integrated into UniProtKB/TrEMBL. DT 07-JUN-2017, sequence version 2. DT 05-JUL-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG19112.2}; GN ORFNames=SORBI_3010G006100 {ECO:0000313|EMBL:KXG19112.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG19112.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG19112.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; KXG19112.2; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 205 AA; 22961 MW; CCADA30FBAC9367B CRC64; MFEKVVTPSD VGKLNRLVVP KQFAERHLPL RGAAARSRGT VLCFHDARGG GTAWRFRYSY WSSSQSYVMT KGWNRYVRDK RLAAGDTVTF CRDGARLFID CRRRQRSSRT GEQAAAVPHA VVVPAAILAV SPTTAGHQQQ KQGLVIFSGQ HQRQQVEEAV AVVEAAAEAE EDDEEAGRRR GRWLRLFGVN LLQFRADPVL LDLQL // ID A0A194YGP2_SORBI Unreviewed; 206 AA. AC A0A194YGP2; DT 05-OCT-2016, integrated into UniProtKB/TrEMBL. DT 05-OCT-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG19125.1}; GN ORFNames=SORBI_3010G008300 {ECO:0000313|EMBL:KXG19125.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG19125.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG19125.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; KXG19125.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 206 AA; 22484 MW; 02A4EFAC9C2B13C2 CRC64; MPVQELSSLK QEPLPSFLCL LSINPKVEPC EDEEPPLPPP FQASSDEWEV TPLSGDNPFF TSVMCKSQVQ NPFQLVIPVR FHRHLPETRA PAVLMCRGRS WTVSYCGVGK WKRLQGAWRD FARDNGLRLG DACVFELVVP TAAGAGTEAA AAAASERDGN DSSGSSKEKE GKTMEVVFRV QVLRSGLPEE IASRGATSDD PLVILD // ID A0A194YHN4_SORBI Unreviewed; 238 AA. AC A0A194YHN4; DT 05-OCT-2016, integrated into UniProtKB/TrEMBL. DT 07-JUN-2017, sequence version 2. DT 05-JUL-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG19111.2}; GN ORFNames=SORBI_3010G006000 {ECO:0000313|EMBL:KXG19111.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG19111.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG19111.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; KXG19111.2; -; Genomic_DNA. DR RefSeq; XP_002437686.1; XM_002437641.1. DR GeneID; 8067899; -. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 238 AA; 26678 MW; A991F060642B7CEB CRC64; MALTLAPELE STAAGSNYSH SSDSGSGRRE HMFEKVVTQS DVGKLNRLVV PKQFAERHLP LRGAAARSRG TVLCFHDARS GGTSPAAWRF RYSYWSSSQS YVMTKGWNRY VRDKRLVAGD TVTFCRDGAR LFIDCRHRQR RSSRRTGEQG AAVPHAVVVP AAMLAALPPV TLRHQQPQGL VVFSGQHQQQ ADQDAVVVED EEEEEEAQRQ RGRWLRLFGV NLLELRTEAP VLLDLQLI // ID A0A194YIW1_SORBI Unreviewed; 1053 AA. AC A0A194YIW1; DT 05-OCT-2016, integrated into UniProtKB/TrEMBL. DT 05-OCT-2016, sequence version 1. DT 05-JUL-2017, entry version 9. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3010G073600 {ECO:0000313|EMBL:KXG19536.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG19536.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG19536.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; KXG19536.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 939 1032 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 521 544 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1053 AA; 116455 MW; 581D4AE8D938C7FF CRC64; MKDQGSGGVT PSPAEGEKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL SCDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPLRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDESEVESA FKRAMPWLAD DFALKDVQNA LFPGLSLVQW MAMQQNPQML ATAAPAVQSQ YLTSNALGMQ DGIGSVSEDP TKRLSMQAQN IGLPNLQAGS KVDHPAINSL AQHQQQPHHV LQQQQVQPLQ QSSAILQQQQ AQLLQQNAIH LQQQQEQLQR QQSQPQQQLK ATACLQSSDQ HKLKEQQPSG GQAVSQAQLL NHILQPSSSQ LQQLGLPKSP TQRPGLPGLT AMGSLQQSQL TQTSQLQQTA EYQQALLQSQ QPQLQQLSQS ELQLQLLQKI QQQNLLSQLN PQHQSQLIQQ LSQKSQEILQ QQVLQHQVGG ADAMGQLKHL QQTPLNHTTG SLTPQQLVRS HSALAESEEP SSSTAPSGSR ISPINSLSRA HQGSRNLPEM PATPQIEHLL QEIQCKSDNR IKNDIQGSKE TVHAPNRHLA SDQLDASSAT SFCLDESPRE GFSFPPVCLD NNVQVDPREN FLIAENVDTL MPDALLSRGM SSGKGICNLP TGQRDHRDVE NELSSAAFSS QSFGVPDMSF KPGCSSDVAV ADGGMASQGL WNSQTQRMRT FTKVQKRGSV GRSIDITRYR GYEDLRHDLA CMFGIQGQLE DPYRTDWKLV YVDHENDILL VGDDPWEEFV SCVKSIKILS SAEVQQMSLD GDLGCIPQTQ ACSASDDANA WRA // ID A0A194YKE1_SORBI Unreviewed; 408 AA. AC A0A194YKE1; DT 05-OCT-2016, integrated into UniProtKB/TrEMBL. DT 05-OCT-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG20417.1}; GN ORFNames=SORBI_3010G198200 {ECO:0000313|EMBL:KXG20417.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG20417.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG20417.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; KXG20417.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 345 408 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 345 408 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 44474 MW; C0449602393712DB CRC64; MSPSVHRARR KYAAALLSPS SLHHLRVPAQ FAAQLVGEEG TATGDGSRAA AVVLLVSPFG KVWRAELRRA GGGGAGSSSS SWQLGGAWAE FAAAHGIGAG WSVVFRLERR GVATVRAFDA AGCLARFCTP HAGKNRPRFM RVLHTEDLEK MRIPDKFVQE HLTGSWSSTQ KAMVFSPLGK FWHVELDRGQ SGVLLGDGWS QFLSAHDLSE GNILLFRYED NMVFTVEAFL QNGYSKEHGA AAADMTDDLI VTGPSTVPQQ GDKELGVSPV KKKKKTRNES TCVDVYHEKT NLSPISAKKD LSQNKLVCAV PCHSLTKRVT SNDLKRLFSL KGSFCSSVGL LEACEITLKT SVGNTRSWSV CFRNAINYGY LSGPGLKRFC SENNLKEGDC CTFRVIETTV WHVTIMSS // ID A0A194YQQ0_SORBI Unreviewed; 1024 AA. AC A0A194YQQ0; DT 05-OCT-2016, integrated into UniProtKB/TrEMBL. DT 05-OCT-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG30558.1}; GN ORFNames=SORBI_004G204000 {ECO:0000313|EMBL:KXG30558.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG30558.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG30558.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000763; KXG30558.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 319 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 961 1022 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 319 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 961 1022 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1024 AA; 114887 MW; E17125B609C0C500 CRC64; MIGSAPDSAR RKPSHDRAND EVRHGDTVVK NTKRSADAFT EKRKKKDHLY NANHGKDRDI RNGDQRIKKS RVPAASSEKG REKGDHDLNK TSSKKKMMGV DLDKKRTVTS RRKKLERERK KKLLINASIR KNMQRDDGEE GRIMSNYYET KVKSKKVSTT LSDKERNKEK LNKTHREKKM QAADSKMRNH DSGVNKGKVS TTFCDKEKKR KRPSNTNSEK ETAPITYAVK EKKMRTTESV EIKMRHDRQN RRNVSLDVSN EKMDTSSGSN YKIRKRKLAH TLLKEKKRMR YNDSDKIHSG RVKEMEKISG GKEKNNQAPI AFLKFIRNNS EKFLVIPPTV APRLEYLTNQ LVYLKDSEGK CSKVLVSKVA ETLVFHQGWD IFVSNHLIKW GEFLLFEYIA ESTFSVRVFR TDSCERVDFN PESTNKGGRK KQAWSNMPPD DLVITDGSSQ NIDDGYYVSG ECPRTKVPQT CHVTCNTKND PKQVEHVVGS GVMAQDNNGK SIDPQCKTKG TSPLCSKGKT LITLIDSEDS EPLEHENGDT MKLATSVADS DTSLVAVNTN EGPIRAQSGI GNGPSVVLGD EKGSSPEIEC GTKSISTTCS EGKTRSQIII TSTALLDLHD SDEDLGRKQR TNVVPLDSIT PVIDYHNHSK TDIIQNLYRK YEAPGGFRCL EKWRKDVVNN QASLDCTVPI KPENPQKNDS MLVDGYGSIE LNPVDEYICS EGNHECVQPL FTMPIKEPSS ADRVTNCGHD GTEIDYSINE KDGGASVLLE AKGERLEPMG SIVHSQSNNA PLCANPVVPG KDGATGLTPI GSEGSCAFIE SMFIGPIEKT SSPDEISKCS SSMIEIEHNV NEKGTPVQFE TQMDQVEPVR SSVRSKSRNI VVRANESEHC FSKQEGRMPS NTEVPEPLLP MKDKILELDY HSPPEINSQL CIPDTTQKWL GLSKSLSSAV IRQRRHHWDV VMLKDPMKRL WPIIYHDNPI FVGFTAGWKH FVAANNLQTG DVCELIKESE DDEPVYSVRM CGKI // ID A0A1B6P6P2_SORBI Unreviewed; 317 AA. AC A0A1B6P6P2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG21324.1}; GN ORFNames=SORBI_009G048200 {ECO:0000313|EMBL:KXG21324.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG21324.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG21324.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; KXG21324.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 100 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 100 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 317 AA; 34446 MW; 23FE8E4DDFB4A17C CRC64; MPEVAVMSAP AAEQGRRRRL EPEGDDYQAT AASPSPHARA PPSSRYKGVV PQPNGRWGAQ TYERHARVWL GTFADEAAAA RAYDVAALRF RGRGAAANFP GHPADAAEMA FLAARPKAEV VDMLRKHTYD DELRQALRSG GSGGGDRSLV VLPRVTMFEK AVTPSDVGRL NRMVVPKLHA EKHFPRIEEA ADAAPVLLAF EDVGVGGGTG KVWRFRYSYW SSSQSYVLTR GWSRFVREKG LAAGDTVAFS QAAITDDAET TTDVKRRRMF IECRKRKRKD DDGCSDGNDG DHCPDDGGER VVRLFGANIA AAAIGAS // ID A0A1B6P9I2_SORBI Unreviewed; 676 AA. AC A0A1B6P9I2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 7. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_009G196900 {ECO:0000313|EMBL:KXG22343.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG22343.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG22343.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; KXG22343.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 676 AA; 73464 MW; 1B44C7A843D3A803 CRC64; MGIDLNSVEE DEQAPAGAVC CGELWHACAG AGVALPRRGS AVVYLPQAHL AAGGDGGELP ALAAAPRVPP HVVCRVVDVE LRADAATDEV YARLALVAED KMFGRNIHDG ETEEKDGEKE DGDGEKLTSH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYEQLRPSQ ELIAKDLHGM KWRFRHIYRG QPRRHLLTTG WSSFINKKKL VSGDAVLFLR GSDGELRLGV RRAVQLKNEA LLEAVNCTDS KLLMLSAVAS SLDNRSIFHI CFNPRIGASE FIVPYCKFLK GLNYPFSIGT RFKVGCKNED ANERSFGLIS GISEVDPIRW PGSKWKSLLV KWDGDTKYSH QNRVSPWDIE RVGSSVSVTH CLSSCVSKRM KLCFPQGNLD APILDGNGRP DSVGTEGFHQ VLQGQELVRV HGAACSHSSD TPRCQGSYGR RFSADVWNCK MNDGHLNTTG FAYQPLGFSE SVKFSEVLQG QEMSQVAAPS FMRDAFSAGT QNGRVRSFDY VQRSAATQGY ALQQFNLPAT EVHSPSSVLM FNQTMVPQPE LDGLTNREEA YGSGYSSIAI QREAEPWPST QQQRVRENGS EPLDTTEASA PARIAKSGSV DRGVGGSSCK LFGFSLTEKI LGTEGVGGKE GNYEADRQTP RVLDLLGHGH STPGALHALC AAPLGI // ID A0A1B6P9U1_SORBI Unreviewed; 408 AA. AC A0A1B6P9U1; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG22484.1}; GN ORFNames=SORBI_009G221400 {ECO:0000313|EMBL:KXG22484.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG22484.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG22484.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; KXG22484.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 137 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 215 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 137 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 215 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 43037 MW; 8B56F37374A6887C CRC64; MDSTSCLLDD ASSGASTGNK NPAPAPAAAT GGKPLQRVGS GASAVMDAAE PGAEADSGSG GAGRATGGCG VVSGNGKLPS SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DVAAQRFRGR DAVTNFRPLA ESDPEAAVEL RFLASRTKAE VVDMLRKHTY GEELAQNRRA FAAASPAASP PPAKNNNPAA SSSSPTAVTA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPAAAA AVVGGECKGV LLNFEDATGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKGL HAGDAVGFYR SAGGKQQFFI DCKLRPKTTT TAASFVNATT TTAAPSPVKA VRLFGVDLLT TPRPGPAVVA APEQEEIAMA NKRARDAIAA CTPVHMVFKK QCIYFALT // ID A0A1B6PBE2_SORBI Unreviewed; 320 AA. AC A0A1B6PBE2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG22988.1}; GN ORFNames=SORBI_008G041100 {ECO:0000313|EMBL:KXG22988.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG22988.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG22988.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG22988.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 35314 MW; A727B60B706BFA8E CRC64; MTYACLPLHS TPPLSLPSPR CQSFGKNLSF FLPPLVVSSL LAFLHTTKAG MAMHHLAQGH PQAWPWGMAM YTNLHYHQHH HQYEREHLFE KPLTPSDVGK LNRLVIPKQH AERYFPLGGN GAGDGSDKGL LLAFEDEAGK PWRFRYSYWT SSQSYVLTKG WSRYVKEKRL DAGDVVRFER VRGGLGTGDR LFICCRRRGE SAAPTPTPPL PVRAPAPALN AAGEQQPWSP MCYSTSGSSY PTSPASPYAY HNDTPHAGEA DAKSSGTPTA PSRKLRLFGV NLDCGPEPEP EPETPTAMYS YMHQSPYAAV SAVPSYWGSS // ID A0A1B6PDR5_SORBI Unreviewed; 632 AA. AC A0A1B6PDR5; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG23850.1}; GN ORFNames=SORBI_008G148900 {ECO:0000313|EMBL:KXG23850.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG23850.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG23850.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG23850.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 384 480 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 632 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 384 480 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 580 632 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 632 AA; 71815 MW; 86B8DD09CE3AFCFE CRC64; MSKASYNTIC KERAAHHYWN QMHNKCSFVV MLDSGFKNGL ILREKYAKNV GDQISETITL KVLDGETYDI EVTKKNNELL LCFGWVAFAN AYELEQGDTL VFRYSGESHF EVQIFSPSTC EKELSCFLTN SIPCVQERIT SHDNHLQSPG SERRNKACTV CKNCISNHYW HHMSDQDRCF IKIMISASDF KNKLTIPKKF ATNVGGQIPE EVQLEAPNGK TYNVKVAKEQ NDLVIGTGWT KFSSSHDLRQ GDLLVFTYSG YAHFKVRIFD PSNCEKEFSC VVMDNFPYGQ ERSISHDNHT QPSTSNMLVK HCSGSSSHKR KTLKTSPTDS PSRKSTEDDD VKEPLNSVGF QKSWLVFPMG CNMNSEQRAK IDALEQKIRP QIPLYITTMD MTSVSSGILA ISKDYAVKHL LDKNGTITLS QLNGSKTWAI TLDINTVGWY ARSTGWLDFI CNNGLKEGDI CIFEPSKGKS RVTLIFHPLE ETHHPKSAGY VPSSRSPPHE ATEPGYIVPR FTVLNNEQMY KIKNKVQAIG SPYSVFVRIM KPGDVTPNNC IMRFCSAYDK KYLQRGQDTM SLIYPNKTHT WEAEIKISNN RYMLGPGWSQ FVNDNELKLG DICLFQLMEN KKLTMTVHII RE // ID A0A1B6PDR8_SORBI Unreviewed; 507 AA. AC A0A1B6PDR8; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG23849.1}; GN ORFNames=SORBI_008G148700 {ECO:0000313|EMBL:KXG23849.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG23849.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG23849.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG23849.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 214 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 402 505 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 402 505 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 507 AA; 57046 MW; 9FFAD38F0EC0ED30 CRC64; MDDPKCFFKV MIGDFKNGMT IPKKFVANIR EKISEQVILK VPNGKTYTVE VAEEQQNELV LRSGWAEFAS AYELELGDLL VFTNNGNSHL TVRIFDRSAC EKELSCVLLD SMPCMQERKC SHGKQMQSPT GKRLAVGSPG NSKTPKMNPT DSPSQKKTEH VPSSEGIHQE PINLGASQKL IKSCIALPAG CSMTSEQEAK VIALEQKIQP KIPFYITAMY KESLASGILQ ISKEYVMEHV EHLANENGTI QLCQFDASNV WTINLYVTSD PHYALPDSRA LPCAWGTRQN LRRTGRGTSR RPGHDTVSTG WLGFIRDNKL GEGEICIFQP ARSKNDRVKL IFRTLEESRC LQPPGFVSST KRHGVAKPPY MLPWKTTLTD EQRSDVEERL GAIRSEIPAY VAVMKNSNVD SRRMCTLGIS SAYAKEYLLG GGGGEKQLSM RMKLRRKDDE WEAGFQDKYG RQQIVGKGWR KFVTDNRLRL GDICLFNLVK NTKMLTMDVH VIRKRSV // ID A0A1B6PDS2_SORBI Unreviewed; 460 AA. AC A0A1B6PDS2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG23851.1}; GN ORFNames=SORBI_008G148900 {ECO:0000313|EMBL:KXG23851.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG23851.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG23851.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:KXG23851.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA Mccann M.C., Ming R., Peterson D.G., Rahman M., Ware D., Westhoff P., RA Mayer K.F., Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.S.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG23851.1; -; Genomic_DNA. DR EMBL; CM000767; KXG23852.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 408 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 408 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 460 AA; 52040 MW; 24849AEEDDA1CB57 CRC64; MSDQDRCFIK IMISASDFKN KLTIPKKFAT NVGGQIPEEV QLEAPNGKTY NVKVAKEQND LVIGTGWTKF SSSHDLRQGD LLVFTYSGYA HFKVRIFDPS NCEKEFSCVV MDNFPYGQER SISHDNHTQP STSNMLVKHC SGSSSHKRKT LKTSPTDSPS RKSTEDDDVK EPLNSVGFQK SWLVFPMGCN MNSEQRAKID ALEQKIRPQI PLYITTMDMT SVSSGILAIS KDYAVKHLLD KNGTITLSQL NGSKTWAITL DINTVGWYAR STGWLDFICN NGLKEGDICI FEPSKGKSRV TLIFHPLEET HHPKSAGYVP SSRSPPHEAT EPGYIVPRFT VLNNEQMYKI KNKVQAIGSP YSVFVRIMKP GDVTPNNCIM RFCSAYDKKY LQRGQDTMSL IYPNKTHTWE AEIKISNNRY MLGPGWSQFV NDNELKLGDI CLFQLMENKK LTMTVHIIRE // ID A0A1B6PDS9_SORBI Unreviewed; 367 AA. AC A0A1B6PDS9; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG23860.1}; GN ORFNames=SORBI_008G149400 {ECO:0000313|EMBL:KXG23860.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG23860.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG23860.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG23860.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 367 AA; 42270 MW; B8CA3E606071757D CRC64; MQLTRECRLN KMAPHLRCES CRKWQEHCYQ EHMARERVSF FKPMTGDFAQ GISIPEKFVS NLNGQITKVF NLKAPSGETW LVNVTKNADE LLFKSGWDDF ARAHELQEND LVIFTCSGNC SFDVLILDSS GCEKVSCFFT TKKGPCMHKH FNGRAHQHTE HRMFSDSEDL GMPLRLVASS HRASTSKKGG KTEPRKEPES PINSNYYIKQ EAISGEEQSD EDWLADPSYY YSKSANILTG GERDQISSLA LIQPGNPAFV AVLHKTHVGY KNNMLTIHHG FAAEHLEERS HEILLLRPNR KEKWYVKYYY ASHTRGFHCC RWVKFVRDNR LRKDHICVFE LMKGAKRTTM VVHVLRKVDN GRIVLVA // ID A0A1B6PDU8_SORBI Unreviewed; 541 AA. AC A0A1B6PDU8; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG23848.1}; GN ORFNames=SORBI_008G148600 {ECO:0000313|EMBL:KXG23848.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG23848.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG23848.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG23848.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 439 539 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 439 539 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 541 AA; 61253 MW; C1FDBD3E36A3B757 CRC64; MNKSGTVFKA CIAHHYWHYM DAPKRFFKIM IGDFKNGVTI PKKFVANIRE QMSEQVTLKV PDGKTYTIEV AEEQQNELVL RSGWPEFASA YELEQFDLLV FKNSGNSHLK VRIFDRSGCE KEISCVLLDS IPCMQERKGS HGKQMQSPTG KRLAVGSPSG SRKTPKMNPI DSPSQKKRHV SPTKRHGVAK PANMLPGHKS LTDEQRSKVE EKVGAMQSET PKMNPTDSLS QKKTEHFPSS EGIHQEPINS GVSHKLIMSW TVCSMTSEQK AKVLALEQKI QPKIPFYITA MYKKSLASGI LPISKKYATK HLANENGTIQ LCQLDGSKVW TINLDITAND RCAVSTGWMG FIRHNKLQEG DICIFQPSKN EKGLKLIFHS LAQRRCLQPP GYVPSAKSLR HGAAKPPYIL PRFTSLTDEQ KSKVEEKLRG IQSEIPAYVA VMKNSNVNSR MCILGISSAY AREYLPGGGE NQLTMRMRLR RKDHTWEPDF QVRNGRQQIY GEGWRKFVTD NKLKPDHICL FNLKNTKTLT MDVHIIRKRS V // ID A0A1B6PDW9_SORBI Unreviewed; 378 AA. AC A0A1B6PDW9; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG23856.1}; GN ORFNames=SORBI_008G149100 {ECO:0000313|EMBL:KXG23856.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG23856.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG23856.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG23856.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 370 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 370 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 44054 MW; 4FB348503741FA24 CRC64; MVEKGCERCK EWQEHYYWEH MDVSKIRFFK RMTGDFAHRT QISVSGRLLG YSVKEPQFTI ITQQSIPEKF VKKFNGQITE GVDMKTPSGE TWHVGVAKNQ DELFFVSGWE DFVKAHELKE NDLLLFTCRG SSSFQVVIFE GSGCEKVSSV FGNRFGPNMW RHFNDMEGKE AECYSQSDSE DTATPPHQLV QSPHNASTSK KSICKRKQPE SPNSNSDYDV KQQGTREEDS DSDNEYTDFK YYYSRTANRL SNDEKSKIIS LASIQPDNPA FITVLQMTNV RPRNNSLTIP RQFAADHLEE RSQEIILRRP NRKDKWYVRY YYTTAIRSLK SYHWSKFVRE NKLREGDICV FELMKGAKRV TMSVHVIKKV ENRFVLLG // ID A0A1B6PEA2_SORBI Unreviewed; 377 AA. AC A0A1B6PEA2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG23855.1}; GN ORFNames=SORBI_008G149100 {ECO:0000313|EMBL:KXG23855.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG23855.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG23855.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:KXG23855.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA Mccann M.C., Ming R., Peterson D.G., Rahman M., Ware D., Westhoff P., RA Mayer K.F., Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.S.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; KXG23854.1; -; Genomic_DNA. DR EMBL; CM000767; KXG23855.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 377 AA; 43925 MW; 1839FBE0F16BE5CF CRC64; MVEKGCERCK EWQEHYYWEH MDVSKIRFFK RMTGDFAHRT ISVSGRLLGY SVKEPQFTII TQQSIPEKFV KKFNGQITEG VDMKTPSGET WHVGVAKNQD ELFFVSGWED FVKAHELKEN DLLLFTCRGS SSFQVVIFEG SGCEKVSSVF GNRFGPNMWR HFNDMEGKEA ECYSQSDSED TATPPHQLVQ SPHNASTSKK SICKRKQPES PNSNSDYDVK QQGTREEDSD SDNEYTDFKY YYSRTANRLS NDEKSKIISL ASIQPDNPAF ITVLQMTNVR PRNNSLTIPR QFAADHLEER SQEIILRRPN RKDKWYVRYY YTTAIRSLKS YHWSKFVREN KLREGDICVF ELMKGAKRVT MSVHVIKKVE NRFVLLG // ID A0A1B6PGK2_SORBI Unreviewed; 285 AA. AC A0A1B6PGK2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG24821.1}; GN ORFNames=SORBI_007G090100 {ECO:0000313|EMBL:KXG24821.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG24821.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG24821.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000766; KXG24821.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 188 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 188 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32158 MW; F7F038EDC1862494 CRC64; MAFSARTISR EMEVQMGNAP PCLNPFPLVN PLLPARYVSH YSSKSTPVFQ SGMSNAYGAL DLRGERKRGR KVIDMEYLFG KILTTTDVGK MNRVLIPRQC AEGCFPKISE GNSGGDDDFL NFEDCSTGLI WRFRFCLCNK SKKYFLTKGW HVYIKDKNLK KGDVLSFYRD ASKTTSPNHM FIHIKPNTRT MSLPDHVSSP IFSPSSLMIN DQFHQSLGFG TSHGIVPVLK PLSFGSRELM PATNLMTQLT KIPKLVTPEI VREEKHLRLF GVDIDIPNHD YGDES // ID A0A1B6PGL8_SORBI Unreviewed; 290 AA. AC A0A1B6PGL8; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG24715.1}; GN ORFNames=SORBI_007G076800 {ECO:0000313|EMBL:KXG24715.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG24715.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG24715.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000766; KXG24715.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 192 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 192 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 33072 MW; 5050ED41848AB788 CRC64; MDRVYANRRT KPLSERPASP FLCCAASAAL LLHSVRLRIS ETTHTTKKPK RGTEAREGRE MAEATAYEEQ RRRQVEANKR KLEELQLHHL SAAVREAAAA AKPSPVKKRK ARVPLDAADA VMQPLRRSGR VANLPDKPAY REEVPAFARR IRRTYGRKDL ANRVYATDEA RSYTISKAED LEQELDSRFP LFIKPMTQSH VTGGFWLGLP TGFCRKHLPK RDETITLVDE DDVESNTLYL AMKKGLSGGW RGFAIQHKLV DGDCLVFQLI ERTKFKVYII RASSYYENED // ID A0A1B6PJK0_SORBI Unreviewed; 523 AA. AC A0A1B6PJK0; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG25854.1}; GN ORFNames=SORBI_006G022000 {ECO:0000313|EMBL:KXG25854.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG25854.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG25854.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; KXG25854.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 84 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 108 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 302 366 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 427 523 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 84 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 108 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 302 366 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 427 523 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 58979 MW; 92A3D7FCB25363B8 CRC64; MRISDELAGC FDAGEGEGAA ERTALVVSPF GKVWRVEVGR DGDGAFLGRG WAEFLAAHGV GLGWFVVLRH EGGGALTVKV FDTSLCIKEF GAPAAVMTSR TSKGVICKPQ FIRIFHPYLS EKMILPARFV KNYVTEECLN SKTAVILSPL GKFWHIELKN DKSGMFFTGG WSQFLEFHGI CNGDVLLLRY EGNMVFKFKA FGLGGCQKDF RHQNAGIQLN TEKRQETHSS IRKRKSNDNK SSSEENKRPK SSVTSPSLKL QEPYQMGTTS WIKKKINTYA LERLLSLSKK FCNWIGFRFS CTITLKTEID STRSWLVRGA AYKGSCYILG EGWKSFCQDN RLKAGDLCTF NIIETTLWHV TITRCKHKST LADTFKQKKS PCSSSRDHKT NKGSSSSEEA KEPKISMTSL SKVRSFTRCV YDIGPPSWIQ KEMNTNSIAR RLSLAPAFCK KIGLRQRCTI TLKTSINSSN SWRVGGHWQK DGNYTIELGW QKFCRENELK VGDVCTFNVI ETKLWHVVIT HRH // ID A0A1B6PJK2_SORBI Unreviewed; 519 AA. AC A0A1B6PJK2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG25853.1}; GN ORFNames=SORBI_006G022000 {ECO:0000313|EMBL:KXG25853.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG25853.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG25853.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; KXG25853.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 84 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 108 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 302 366 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 423 519 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 84 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 108 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 302 366 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 423 519 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 519 AA; 58482 MW; 865D1DC47C20E907 CRC64; MRISDELAGC FDAGEGEGAA ERTALVVSPF GKVWRVEVGR DGDGAFLGRG WAEFLAAHGV GLGWFVVLRH EGGGALTVKV FDTSLCIKEF GAPAAVMTSR TSKGVICKPQ FIRIFHPYLS EKMILPARFV KNYVTEECLN SKTAVILSPL GKFWHIELKN DKSGMFFTGG WSQFLEFHGI CNGDVLLLRY EGNMVFKFKA FGLGGCQKDF RHQNAGIQLN TEKRQETHSS IRKRKSNDNK SSSEENKRPK SSVTSPSLKL QEPYQMGTTS WIKKKINTYA LERLLSLSKK FCNWIGFRFS CTITLKTEID STRSWLVRGA AYKGSCYILG EGWKSFCQDN RLKAGDLCTF NIIETTLWHV TITRSTLADT FKQKKSPCSS SRDHKTNKGS SSSEEAKEPK ISMTSLSKVR SFTRCVYDIG PPSWIQKEMN TNSIARRLSL APAFCKKIGL RQRCTITLKT SINSSNSWRV GGHWQKDGNY TIELGWQKFC RENELKVGDV CTFNVIETKL WHVVITHRH // ID A0A1B6PKA3_SORBI Unreviewed; 194 AA. AC A0A1B6PKA3; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG26102.1}; GN ORFNames=SORBI_006G050900 {ECO:0000313|EMBL:KXG26102.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG26102.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG26102.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; KXG26102.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 78 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 78 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 21023 MW; CAA7D6F10EA0A431 CRC64; MDGWFFLLSS VLTHQSSKSL RRPSRKVVMS KGKSVAMSSA GHSAGASPTD GGADPLSMSE TPCAMQPGVL PLLGRPYFTC ILCKSHVNQP FQVVVPRSLA PFLPATTVPA TVTRHGRSWE MRFTGGRQIQ RLEAGWRGFA LDNGLMLGDG CVFELLDGKP EGVVFRVQVL RAHIPEEIRE RAGGYTSSTP ILID // ID A0A1B6PM25_SORBI Unreviewed; 722 AA. AC A0A1B6PM25; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 7. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_006G149600 {ECO:0000313|EMBL:KXG26729.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG26729.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG26729.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; KXG26729.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 636 716 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 167 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 722 AA; 78108 MW; 33D1D5179E90E5C4 CRC64; MSAAAACAPT RRLGTTMLTF AARLPESPEE TEARRGAAAE PRGRDVDVHP RLWQACAGSM RAVPPVGAAV YYFPQGHAEH AGGAAVDLRV PPFVPCRVAA VRLMADPDTD DVYARIRLVP LRAWEPVADV GDAALVKTDG SSRGGADGDG DGDAGGGQQQ QPRPLSFAKT LTPSDANNGG GFSVPRFCAL SIFPELDYSF SPPVQFVSAR DVHGVEWTFR HIYRGTPRRH LLTTGWSNFV HNKKLQPGDS VVFVREEDGK VHIGLRRAKR VFCRRGGGGS NAGVAVAGPS DGKVPAEDVV EAARLAAAGQ PFEVVHYPRA SAPEFVVRAA AVKESMQAPW CPGLRFKMAF ETEDLSRISW FMGTIAGVEP ADPARWPQSP WRLLQVTWDE PELLRNVNRV CPWRVELVSS MPKLPRFSPP PRKKPRTPSY TETRSERQQL FDPAFPFPPT HPLPLAPPSL ALLPAPNHDG NRHDFVPSFP VIPDSIAAAG IQGARHLQFA PFFSDLHLSD LQRSLLFSGI QPADHQAPPA PRIATGLKIG SPAPRSPSSE AKNGDDVKPP VIMLFGREIL TEEQMKSNSS TRSGSSKPDC DDEKTSSTSD RSGSDVSHGS PAKKNSPSLT LWWSGDSSLS AFALEPGQCK VFVESDTLGR NLDLSALSSF EELCARLSSF FGINNADLRS HMVYRTIAGE VKHVGDEPFS VFVKSARRIT ILTDAGSNNT GK // ID A0A1B6PNX4_SORBI Unreviewed; 945 AA. AC A0A1B6PNX4; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 7. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_006G255300 {ECO:0000313|EMBL:KXG27357.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG27357.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG27357.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; KXG27357.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 842 926 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 945 AA; 103692 MW; C7AFF403C16BCBD0 CRC64; MASAQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTKKIPNSR IPNYPSLPSQ LLCQVHNITL HADKETDEIY AQMTLQPVHS ETDVFPIPSL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR QPKRHLLTTG WSLFVGAKRL KAGDSVLFIR DEKSQLLVGV RRATRQQPAL SSSVLSTDSM HIGVLAAAAH AASSGGSFTI YYNPRTSPSP FVIPLARYNK ATYLQPSVGM RFAMMFETEE SIKRRCTGTI VGISDYDPMR WPNSKWRNLQ VEWDEHGYGE RPERVSLWDI ETPENMVFPS PLNSKRQCLP SYAVPGLQIG SVNMSSIPRA QGSPFGNLQQ MPGSGSDLAL LLLNQSGQNL GSPIACQQSS FSSIIQNAKH SYFPPSTFGA STGSMKQETM PSNEAPQQLN ALGIQKGDQV SCEVQPGIDS ISAREMSVKP RGPRSTDSYS SQSISDQNGK GEPRTKSRRS KKSSSHKTIS DKSELSSLPS QICDKQRHGS EPTLVDCGAE QATCGNIEDS SGAPTRGDFA GELQVLEVEQ HELLSPPKLE SSKSPDGGKS VSSFPNQGCF SQFLEGLDWM IPPSYYQDSN GIQSATASDN IFNPSEGIPS AMNTDGMEAF QTSCLSECFP NSIQEFINSP DINTLTFMSP EMQHLDAQHD GSNLPSTSNS YVQMSFSEES QSASLSGLHM EAIHINSSCS QPLATGSFDA GTFSKLSNMK ECQALPLQEI HNGSMGTPSC SMDAAAEYSM DRSVKPMKPP VRTYTKVQKL GSVGRSIDVT RFRDYHELRS AIACMFGLQG KLEHPGGSDW KLVYVDYEND VLLVGDDPWE EFINCVRCIR ILSPSEVQQM SENGVHVLND CIQIA // ID A0A1B6PP06_SORBI Unreviewed; 819 AA. AC A0A1B6PP06; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_006G262100 {ECO:0000313|EMBL:KXG27404.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG27404.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG27404.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; KXG27404.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 720 804 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 819 AA; 91051 MW; CE6CB345C41C63E8 CRC64; MSSSSGASIG QPPPPPPAPP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAASTNKEVD GHIPNYPNLP PQLICQLHDV TMHADVETDE VYAQMTLQPL NPQEQNDAYL PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI HDVEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLSK YIKAVFHTRI SVGMRFRMLF ETEESSVRRY MGTITEVSDA DPVRWPSSYW RSVKVGWDES TAGERPPRVS LWEIEPLTTF PMYPSLFPLR VKHPWYSGVA ALHDDSNALM WLRGVAGEGG FQSLNFQSPG IGSWGQQRLH PSLLSNDHDQ YQAVVAAAAA SQSGGYLKQQ FLHLQQPMQS PQEQCNLNPL LQQQILQQAS QQQMVSPDAQ NIQSVLSPNA IQQQLHQLQQ MQHAHNDQKQ KIQPDQPYQV PSSAVLPSPT SLPSHLREKF GFSDPNVNSS SFISSSSNEN MLESNFLQGS SKSVDLSRFN QPVVSEQQQQ QQQQAWKQKF MGSQSMSFGG LVSLNSPTSK DGSADNKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVA DNNISVIPSG STYLQSPMYG CLDDSSGLLQ NTGENDPAAR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK PGNDPRYLS // ID A0A1B6PP25_SORBI Unreviewed; 451 AA. AC A0A1B6PP25; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 12-APR-2017, entry version 4. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG27429.1}; GN ORFNames=SORBI_006G266400 {ECO:0000313|EMBL:KXG27429.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG27429.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG27429.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; KXG27429.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 419 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 451 AA; 49390 MW; 34BE90E4F4A656AE CRC64; MANAKGSSAG AAGAGHADLG RAISHEQHQA FMMASVHRAA PGAANVHQQH FHQYPAGLIR APVPMPVHVP VSQTPYSAQI AVPPPQPLIP PPDHRLHSLP PTGCYQDYSP YGNTASLQHT AARGFADWGV HNNAIVSLAH ATSFANGSNN INSNGLLHQN LSPYTTHTWT TTYVQRPYNT AYAPATMNML QTPSFHSNNH EKESVFPSTS PCKDSTPSVL NCAVFSNSFN MGPSGTPTSP FQLTSPSSTN YTSTQIFEET NNLEDTSRVF GGGDNESNNS EEPDPTPAVE MEDLNQGNGH ISFTNKKVNC QDYRMVLRKD LTNSDVGNIG RIVLPKKDAE PNLPILEDKD GLILEMDDFE LPAVWKFKYR YWPNNKSRMY ILETTGEFVK RHGLQAKDIL IIYRNKRSGR YVARAVKAEH IPAPGCECIK AGNPREECGF SVSPSVKKII T // ID A0A1B6PQ28_SORBI Unreviewed; 274 AA. AC A0A1B6PQ28; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG27771.1}; GN ORFNames=SORBI_005G041400 {ECO:0000313|EMBL:KXG27771.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG27771.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG27771.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000764; KXG27771.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 30780 MW; C86442054090DEF5 CRC64; MAMNHLSQEH PQAWPWGVAM YTNLHYQHHY EKEHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLSGDSGE KGLILSFEDE AGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KQLDAGDVVH FERMRSFGMG DRLFISYRRH GESATVAAAP PPPPPPPAVR VVAPAQSTGG GEQQPWSPMC YSTSGSYPTS PANSHAYRHS VDHDHSNMQH AGESQSDRDN RSCSAASAPS SRQLRLFGVN LDCGPGPELE PETPTAMYGY MHQSPYTSNN WSSP // ID A0A1B6PQP9_SORBI Unreviewed; 480 AA. AC A0A1B6PQP9; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG27994.1}; GN ORFNames=SORBI_005G073500 {ECO:0000313|EMBL:KXG27994.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG27994.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG27994.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000764; KXG27994.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 372 467 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 372 467 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 480 AA; 53521 MW; 341A8EF64F7FC763 CRC64; MRGRPKKQQG TTSSAAAAVK EREAARGRPR SKGKETEMGG EGQEPATEKQ KKTQGKGMEK EKEKEKNTAV REDGEQDDNN EKEKTAAGAG NVCPQFFKVF FPELSGERLK IPPMFRQHLQ EQPTGPVSLR GPSGKKWQAT LASESEAWFF EQGWKEFVTD HSINKGYFLV FTYDGPSQFS VVVFSPSGVT DPIALKAKPT NEVVVKIEED EEGIQGDMDA GGASEVPIPP TQEGNVVTGR RTRAMTAGAS EIPPLPTEEG NVVTGKRTRA VTDLPADADA SKRIQADKRR SQAGTSKDGL TIVRNATFSL LDESKTFNKT QVRDKNVPRS GKFLLKTSRA PVVISQRRPV TEEERDLALR KANEFKSKYP FTVQIMMESY VYVGFFMNIA CDFVRKSLPH TNKKMTLWDP LGKPWEVNYV YYSDRSVGSF SGGWGKFALG NNLEKFDVCI FELFKEDNIK VHIYRVVPEI TPLLRASNKD // ID A0A1B6PS69_SORBI Unreviewed; 854 AA. AC A0A1B6PS69; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 7. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_005G132000 {ECO:0000313|EMBL:KXG28518.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG28518.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG28518.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000764; KXG28518.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 726 810 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 93654 MW; 80A55D932F541A21 CRC64; MTSAAAAAQA AGGGGGGGGV CEGDAAAAAR GGGGGGTEDG MYTELWSLCA GPLVTVPRVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM NVELKAEPDN DEVYAQLTLL PESKPEENGS SQEEMPAAPP AALARPRVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPTQE LVAKDLHGVE WRFRHIFRGQ PGRLFLQSGW SVFVSAKRLV AGDAFIFLRG DNGELRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA VNTGTMFTVY YKPRTSPAEF VVPCDRYTES LKRNYPIGMR FKMRFEGEEA PEQRFTGTIV GNVDPEQAGW AESKWRYLKV RWDEASSIPR PERVSPWQIE PAVSPPPVNP LPVHRPKRPR SNAVASLAES SAPTKEAAPK VTLETQQHAL QRPLQTQDNA APKSGFGDNS ELDAAHKSAL RPSGFDLEKN TIGMQRKLGS DSWMHMNRPE GYNEMLSGYQ QPNKDVQNPQ GFCSLPDQIA AGRPNFWHTV NAHYQDQQGN HNLFPGSWSM MPSSTGFGLN RQSYPMMQEV GGLSQSATNT KFGNGAYAAL PGHGIDQYSS GWFGHMIPGA RMDDVQPRVI KPQPLVLAHG EAQKMKGNSC KLFGIHLDSP AKSEPLKSPP SVAYDGMPQT PAAAEWRMVD SIEADRCSDP LKMPKQLDAT QVDPVPEKCS QVSRGTQCKS QGGSTRSCKK VHKQGIALGR SVDLTKFNGY TELIAELDEM FDFNGELKGS NKEWMVVYTD NEGDMMLVGD DPWNEFCNMV HKIFIYTREE VQRMNPGTLN SRSEDSLANS MERGSTARET PGSLSASSLD SENC // ID A0A1B6PS70_SORBI Unreviewed; 855 AA. AC A0A1B6PS70; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 7. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_005G132000 {ECO:0000313|EMBL:KXG28517.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG28517.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG28517.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000764; KXG28517.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 727 811 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 855 AA; 93782 MW; 2C36E62960777D7B CRC64; MTSAAAAAQA AGGGGGGGGV CEGDAAAAAR GGGGGGTEDG MYTELWSLCA GPLVTVPRVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM NVELKAEPDN DEVYAQLTLL PESKQPEENG SSQEEMPAAP PAALARPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGV EWRFRHIFRG QPGRLFLQSG WSVFVSAKRL VAGDAFIFLR GDNGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPAE FVVPCDRYTE SLKRNYPIGM RFKMRFEGEE APEQRFTGTI VGNVDPEQAG WAESKWRYLK VRWDEASSIP RPERVSPWQI EPAVSPPPVN PLPVHRPKRP RSNAVASLAE SSAPTKEAAP KVTLETQQHA LQRPLQTQDN AAPKSGFGDN SELDAAHKSA LRPSGFDLEK NTIGMQRKLG SDSWMHMNRP EGYNEMLSGY QQPNKDVQNP QGFCSLPDQI AAGRPNFWHT VNAHYQDQQG NHNLFPGSWS MMPSSTGFGL NRQSYPMMQE VGGLSQSATN TKFGNGAYAA LPGHGIDQYS SGWFGHMIPG ARMDDVQPRV IKPQPLVLAH GEAQKMKGNS CKLFGIHLDS PAKSEPLKSP PSVAYDGMPQ TPAAAEWRMV DSIEADRCSD PLKMPKQLDA TQVDPVPEKC SQVSRGTQCK SQGGSTRSCK KVHKQGIALG RSVDLTKFNG YTELIAELDE MFDFNGELKG SNKEWMVVYT DNEGDMMLVG DDPWNEFCNM VHKIFIYTRE EVQRMNPGTL NSRSEDSLAN SMERGSTARE TPGSLSASSL DSENC // ID A0A1B6Q0L5_SORBI Unreviewed; 431 AA. AC A0A1B6Q0L5; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG31471.1}; GN ORFNames=SORBI_3003G005500 {ECO:0000313|EMBL:KXG31471.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG31471.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG31471.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG31471.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 197 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 197 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 47712 MW; 4D51DC4B7AABF9BE CRC64; MEIASRVSLG IHQPHSTTGF QFQQGVPPPG FQRRVAAEAM ANDPPPPLKR KRGRPPGSKS AKSRIGSPPG EQSPQSKMEQ KVALVKQRVA LLDSASNSSC SDSDKPAVLH CGDTDDEGNY NLLKALKSRR LDSEQKKLSG ALQAHNAQNI ITGVTNIAEA SDINGQILSA SVHGNCGSAM ARAKEVQAKL PENHLSFTKA MLPSHVIRGF WLGMPTEFCN KHLPKEDTGI MLEDENGEDH HTTYLGSRQG LSGGWRGFAI KHDIKVGDVL VFQLVESRKF KVYIIRANEF TATDGAISLL NLEARKKGKL LSKATRVEHS VPADDDNVVI NKAGRLRISD SDMDFGDVTS FSDFSIIVDR LVIDCKFQEP LRRTYYELCR SQKAFLHRRQ SASRRASRRA RRSGRLPTRT CWCGRRPWSP WLCLAWMSGS C // ID A0A1B6Q0M7_SORBI Unreviewed; 392 AA. AC A0A1B6Q0M7; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG31472.1}; GN ORFNames=SORBI_3003G005500 {ECO:0000313|EMBL:KXG31472.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG31472.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG31472.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG31472.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 392 AA; 43497 MW; 8FC5EE6188D20DDF CRC64; MANDPPPPLK RKRGRPPGSK SAKSRIGSPP GEQSPQSKME QKVALVKQRV ALLDSASNSS CSDSDKPAVL HCGDTDDEGN YNLLKALKSR RLDSEQKKLS GALQAHNAQN IITGVTNIAE ASDINGQILS ASVHGNCGSA MARAKEVQAK LPENHLSFTK AMLPSHVIRG FWLGMPTEFC NKHLPKEDTG IMLEDENGED HHTTYLGSRQ GLSGGWRGFA IKHDIKVGDV LVFQLVESRK FKVYIIRANE FTATDGAISL LNLEARKKGK LLSKATRVEH SVPADDDNVV INKAGRLRIS DSDMDFGDVT SFSDFSIIVD RLVIDCKFQE PLRRTYYELC RSQKAFLHRR QSASRRASRR ARRSGRLPTR TCWCGRRPWS PWLCLAWMSG SC // ID A0A1B6Q0R0_SORBI Unreviewed; 442 AA. AC A0A1B6Q0R0; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG31470.1}; GN ORFNames=SORBI_3003G005500 {ECO:0000313|EMBL:KXG31470.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG31470.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG31470.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG31470.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 208 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 442 AA; 48935 MW; 08F0C6AB9F4AD3A3 CRC64; MEIASRVSLG IHQPHSTTGF QFQQGVPPPG FQRRVAAEAM ANDPPPPLKR KRGRPPGSKS AKSRIGSPPG EQSPQSKMEQ KVALVKQRVA LLDSASNSSC SDSDKNDELA IVVCHQPAVL HCGDTDDEGN YNLLKALKSR RLDSEQKKLS GALQAHNAQN IITGVTNIAE ASDINGQILS ASVHGNCGSA MARAKEVQAK LPENHLSFTK AMLPSHVIRG FWLGMPTEFC NKHLPKEDTG IMLEDENGED HHTTYLGSRQ GLSGGWRGFA IKHDIKVGDV LVFQLVESRK FKVYIIRANE FTATDGAISL LNLEARKKGK LLSKATRVEH SVPADDDNVV INKAGRLRIS DSDMDFGDVT SFSDFSIIVD RLVIDCKFQE PLRRTYYELC RSQKAFLHRR QSASRRASRR ARRSGRLPTR TCWCGRRPWS PWLCLAWMSG SC // ID A0A1B6Q5P8_SORBI Unreviewed; 392 AA. AC A0A1B6Q5P8; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG33236.1}; GN ORFNames=SORBI_3003G275400 {ECO:0000313|EMBL:KXG33236.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG33236.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG33236.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:KXG33236.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., RA Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., RA Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., RA Bharti A., Chapman J., Feltus F., Gowik U., Grigoriev I., Lyons E., RA Maher C., Martis M., Narechania A., Otillar R., Penning B., RA Salamov A., Wang Y., Zhang L., Carpita N., Freeling M., Gingle A., RA Hash C., Keller B., Klein P., Kresovich S., Mccann M., Ming R., RA Peterson D., Rahman M., Ware D., Westhoff P., Mayer K., Messing J., RA Sims D., Jenkins J., Shu S., Rokhsar D.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG33236.1; -; Genomic_DNA. DR EMBL; CM000762; OQU87412.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 174 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 392 AA; 42661 MW; 54C124939C8BAB15 CRC64; MPARASHPAL ATLRPPGWPR LRAPGLGLAP TGGRWRCLLP HLHPISEPAR HLSPRAPRLR VSARPPHPAI KASPAPTLDA VVVAAAAATA AAATSSLTGM AGINKRRTSP ASTSSSSGGD VLPQRVTRKR RSVRRGARTA ARRPSSAPRP INELDLNTAA LDPDHYATGL RVLLQKELRN SDVSQLGRIV LPKKEAESYL PILMAKDGKS LCMHDLLNAQ LWTFKYRYWF NNKSRMYVLE NTGDYVKAHD LQQGDFIVIY KDDENNRFVI GAKKAGDEQT ATVPQVHEHI HISAALPAPQ AFHDYAGPVA AEADMLAIVP QADEIFDGIL NSLPEIPVAN VRYSDFFDPF GDSMDMANPL SSNNPSVNLA THFHDEKIGS CSFPYPKSGP LM // ID A0A1B6Q638_SORBI Unreviewed; 685 AA. AC A0A1B6Q638; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3003G298600 {ECO:0000313|EMBL:KXG33384.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG33384.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG33384.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG33384.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 74378 MW; 198281262221FB3B CRC64; MGIDLNMVGG EGHDRRPPPP VSRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGDVA ADLPPHVVCR VADVELCADA ATDEVYARLA LVAEGEAFGR NLHGGGAEGD DDMEDLDAER KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGTKWKF RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED FSSDSTKRHT LSAVADSLKH RSVFHISYNP RATASEYIIP YHKFLKSLNH PVCVGARINF QCHNEDVSER RSGMVVRISE IDPMKWPGSK WRSLLVRWED GAECNGQDRV SPWEIEVAGG SVSVAHSLSA SSSKRTKLCA QGNLDVPTMY VTGNGCTDSV ETGKLPRVLQ GQELMGFRTR HVPCAPQTAE AAKLQSSDAS RFLSNARDCA LSAPTSRLAV HNSGFTYQSV GFNESIGFSE VLQGQEISRA VPMFQGMMSE ACSLKGGYGL HSYMHTPVAV NGLSAPAQEC CLTLSTPPGA QVPSLYPDNI FNRTVVPQLG LASKFGGGGT NGQQSGPFDR RREIWTKPQH ETPDQMNLDQ FETRRASAPG DAGKLGSGGG EVRKTSCRLF GFSLTEKILP ADDDGVKEVS YEPECQNPRM LDLFGYNCST PSAALPALCA APIGM // ID A0A1B6Q645_SORBI Unreviewed; 682 AA. AC A0A1B6Q645; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3003G298600 {ECO:0000313|EMBL:KXG33385.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG33385.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG33385.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG33385.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 74144 MW; 0887A9063017B7CC CRC64; MGIDLNMVGG EGHDRRPPPP VSRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGDVA ADLPPHVVCR VADVELCADA ATDEVYARLA LVAEGEAFGR NLHGGGAEGD DDMEDLDAER KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGTKWKF RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED FSSDSTKRHT LSAVADSLKH RSVFHISYNP RATASEYIIP YHKFLKSLNH PVCVGARINF QCHNEDVSER RSGMVVRISE IDPMKWPGSK WRSLLVRWED GAECNGQDRV SPWEIEVAGG SVSVAHSLSA SSSKRTKLCA QGNLDVPTMW NGCTDSVETG KLPRVLQGQE LMGFRTRHVP CAPQTAEAAK LQSSDASRFL SNARDCALSA PTSRLAVHNS GFTYQSVGFN ESIGFSEVLQ GQEISRAVPM FQGMMSEACS LKGGYGLHSY MHTPVAVNGL SAPAQECCLT LSTPPGAQVP SLYPDNIFNR TVVPQLGLAS KFGGGGTNGQ QSGPFDRRRE IWTKPQHETP DQMNLDQFET RRASAPGDAG KLGSGGGEVR KTSCRLFGFS LTEKILPADD DGVKEVSYEP ECQNPRMLDL FGYNCSTPSA ALPALCAAPI GM // ID A0A1B6Q7Q7_SORBI Unreviewed; 684 AA. AC A0A1B6Q7Q7; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG33946.1}; GN ORFNames=SORBI_3003G393600 {ECO:0000313|EMBL:KXG33946.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG33946.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG33946.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG33946.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 620 680 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 620 680 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 684 AA; 75215 MW; E2221275FC16A22B CRC64; MQPAMDAEVV GVAVKQEPEE IVAEADGDEE GEPEKVVVKR RRKKKTACDP HKKRACVDCT KRCARIHGRP ASPSALPSSS NARPVPAVPS FFKVMMGYFS EGMDIPSPFA RTIWDLAGSN IFLEDAFGLR WRVRLCLRDG VLSFGHGWKN FVLDHAVSCG EFLVFRQIAR SVFTVQMFAP SAVERLYHCE KNKRQSRKRK PRQKTCSPSI QTVKVTKNSV KNSKKRLRTD DQQNGIRPRC RKSKMAAEVC IDESDVPDSA SEPKCSDTSE RVPEAGAAEP QEISEAPAGH ECEVQGVLDG EAKIADDSTI LGEDQSNHNA ISASIMQVST ANEIEPGEGL NLPTDFDASV PLAMMDLNEV SIDDIFLSAD IYEFESDMCN PESFSVDLNM VEPITTGQTS GFSCLEDTPQ NHLSSMGDGH RSLIPEAVLC IENKEMTDVL GTGTSYFVDS SVHDIDINAL PANEPPSFGE DNPSPQADAE MHSNECGLSS CNKDKGNSLL PLMNKQTAHK ESDSSMTTEQ DKAQGGQCNM QDSIRQHATE IMSRSAKPHE LADLRQNHLQ TGNGSESIHS GASESGGVLA LTTNSIEFCI DVPAPGQTWL ELPGRLPVLP RTKKHGRKVV ILKDPCMRLW PVLYQCTPRF NGFITGWVDI CRENRLQQGD TCEFELSGNS ELSFQLQVRV PNTQ // ID A0A1B6Q7R0_SORBI Unreviewed; 683 AA. AC A0A1B6Q7R0; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG33945.1}; GN ORFNames=SORBI_3003G393600 {ECO:0000313|EMBL:KXG33945.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG33945.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG33945.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG33945.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 619 679 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 619 679 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 683 AA; 75176 MW; EF0D31A527AC1714 CRC64; MQPAMDAEVV GVAVKQEPEE IVAEADGDEE GEPEKVVVKR RRKKKTACDP HKKRACVDCT KRCARIHGRP ASPSALPSSS NARPVPAVPS FFKVMMGYFS EGMDIPSPFA RTIWDLAGSN IFLEDAFGLR WRVRLCLRDG VLSFGHGWKN FVLDHAVSCG EFLVFRQIAR SVFTVQMFAP SAVERLYHCE KNKRQSRKRK PRQKTCSPSI QTVKVTKNSV KNSKKRLRTD DQQNGIRPRC RKSKMAAEVC IDESDVPDSA SEPKCSDTSE RVPEAGAAEP QEISEAPAGH ECEVQGVLDG EAKIADDSTI LGEDQSNHNA ISASIMQVST ANEIEPGEGL NLPTDFDASV PLAMMDLNEV SIDDIFLSAD IYEFESDMCN PESFSVDLNM VEPITTGQTS GFSCLEDTPQ NHLSSMGDGH RSLIPEAVLC IENKEMTDVL GTGTSYFVDS SVHDIDINAL PANEPPSFGE DNPSPQADAE MHSNECGLSS CNKDKGNSLL PLMNKQTAHK EYSSMTTEQD KAQGGQCNMQ DSIRQHATEI MSRSAKPHEL ADLRQNHLQT GNGSESIHSG ASESGGVLAL TTNSIEFCID VPAPGQTWLE LPGRLPVLPR TKKHGRKVVI LKDPCMRLWP VLYQCTPRFN GFITGWVDIC RENRLQQGDT CEFELSGNSE LSFQLQVRVP NTQ // ID A0A1B6Q7T6_SORBI Unreviewed; 700 AA. AC A0A1B6Q7T6; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG33967.1}; GN ORFNames=SORBI_3003G398200 {ECO:0000313|EMBL:KXG33967.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG33967.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG33967.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG33967.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 531 632 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 531 632 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 74122 MW; 7A88D35033DF2A6A CRC64; MDASGGSSPP HSQENPPEHG GDMGEAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS STFSSSSSSN SSSAYTNTTA GGAGGGGAAA AGEPSEPASA GEGFDALDDI DQILDFASLS MPWDSEPFPE VSLMLEDAMS APPNPVCDVR REEKPVLEGT GREEACMDAS SVAAGEELPR FFMEWLTSNR ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GNMQLLKLIL TWVQNHHLQK KRPRDVMEEA AGLHGQLPSP GANQGYEFPA GGQDMAAGGG TSWMPYQQQP FTPPAYGGDA VYPNAAGQQY PFHQSSSTSS VVVNSQPFSP PTVGDMHGAG GANMAWPQQY VPFPTPGAST GSYPMPQPFS AGFGGQYAAA GAAGGHPTMA PQRMAGVEAS ATKEARKKRM ARQRRLSCLQ QQRNQQLNLG QIQGSVHPQE PSPRSAHSTP VTPSAGGWGF WSPSSQQQVQ NPLSIKSNSS GEPVPLSLEA VTAPPAKPAP GARLDDSPQR LAAASDKRQG AKADKNLRFL LQKVLKQSDV GSLGRIVLPK EAEVHLPELK TRDGISIPME DIGTSRVWNM RYRFWPNNKS RMYLLENTGE FVRSNELQEG DFIVIYSDVK SGKFLIRGVK VRPPAQEQGN GSSAAGKHKL MSPAGPEKAS VPGDADVDGV SGACKGRSPQ GVRRDRQQGA AAMNQMAVSI // ID A0A1B6Q7Z0_SORBI Unreviewed; 810 AA. AC A0A1B6Q7Z0; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3003G411900 {ECO:0000313|EMBL:KXG34038.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG34038.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG34038.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; KXG34038.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 698 791 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 810 AA; 90775 MW; 5652BAF83FEE310C CRC64; MPPAAAMALP SQAPSNSGDP LYPELWRACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VAGNQMRLYD LPSKLLCRVL NVELKAETDT DEVYAQIMLM PEPEQTDVAA EKASSASAAS PRPAVRSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT QSPPTQELVA KDLHGMEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQLSNVPSSV ISSQSMHLGV LATAWHAINT KSMFTVYYKP RTSPSEFIIP YDQYMESVKN NYSIGMRFRM RFEGEEAPEQ RFTGTIVGCE NLDPLWPDSS WRYLKVRWDE PSTIPRPDRV SPWKIEPASS PPVNPLPLSS RVKRPRQNAP PPSPEASVLT KESAAKIDID SAQTQHQNSV LQGQEQMTLR NNLTESNDSD STVQKPMMWS PSPNGKAHTN FQQRPAMDSW MPMGRRETDF KDSRSAFKDA RTASQSFRDT QGFFMQAYDD NHHRLSFNNQ FQDQGSAHRF ADPYFYMAQQ PSLTVESSTR TQTANNDLRF WGDQNSIYGN PGDQQQQGFS FGQNPSSWLN QPFPQVEQPR VVRPHATVAP FDLEKTREGS GFKIFGFQVD TTSPSPAQLS SPLCAIREHV VQTRPSAPVN ELQPVQNECL PEGSVSTAGT ATENEKNIQQ AQPSSKDIQS KSQGASTRSC TKVHKQGVAL GRSVDLSKFT DYDELKAELD KMFEFNGELV SANRSWQIVY TDNEGDMMLV GDDPWEEFCS IVRKIYIYTK EEVQKMNSKS SAPRKEEPLT VGEGCAATNE // ID A0A1B6QBR4_SORBI Unreviewed; 402 AA. AC A0A1B6QBR4; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 07-JUN-2017, entry version 7. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG35344.1}; GN ORFNames=SORBI_3002G161600 {ECO:0000313|EMBL:KXG35344.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG35344.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG35344.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:KXG35344.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., RA Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., RA Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., RA Bharti A., Chapman J., Feltus F., Gowik U., Grigoriev I., Lyons E., RA Maher C., Martis M., Narechania A., Otillar R., Penning B., RA Salamov A., Wang Y., Zhang L., Carpita N., Freeling M., Gingle A., RA Hash C., Keller B., Klein P., Kresovich S., Mccann M., Ming R., RA Peterson D., Rahman M., Ware D., Westhoff P., Mayer K., Messing J., RA Sims D., Jenkins J., Shu S., Rokhsar D.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000761; KXG35344.1; -; Genomic_DNA. DR EMBL; CM000761; OQU89229.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 258 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 258 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 402 AA; 43706 MW; D25AC3CC5C453B30 CRC64; MDASTGVPSK PASAGMDVMS APPHLASDAD GSREEKYVPG VTGSEVAYTH VSAAGEEEPP QFLIDWWVTS IRESISAEDL CNIRFRRSTI QAATARLGGG RQGNLQLLKL IFTWVQNNHQ RPRDVMEEAA GLHGQVSSSP PGANPVPGYE FPAGGQHIAA GGGTSLTPLI QQPSTPPARA AGQHHLFHQS SSKSSVVVSR QLFSPGFGGQ YAGAASHLIM AGVEASATKE KQKDDSVQRL AAYKRQGAKA EEKLRFLLQK ELKQSDVGEL GRIVLPKMEA EVHLPELKTK YGISIPMEDI GTSRVWNMQY RFWSDNKSRM YVLGNTGEFV RSNELQQGDF IVIYSDVKSG KYLIQGVKVK PPDTTTTDSA HLVRDTSEVD LDEVDKKKER TSTDGGSFKS KL // ID A0A1B6QE14_SORBI Unreviewed; 663 AA. AC A0A1B6QE14; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3002G290600 {ECO:0000313|EMBL:KXG36152.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG36152.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG36152.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000761; KXG36152.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 572 653 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 663 AA; 72693 MW; 83912BB8CAB29FE0 CRC64; MSTCAPTRLG TTLTFAAREP PSPEPEDKGR DVHPQLWQAC AGSMCAVPPV GAADYYFPQG HAEQAGAAVD LRVVPPFVAC RVAAVRLMAE PDTDDIYAKI RLVPLRPWEP VTDVGDALLG EGSRGGDGDG QQRRRRRPRP LSFAKTLTQS DVNTGGGFTV PRLCALSIFP ELDYSFDPPL QFIPATDVHG VEWTFRHVYR GNPPRHLITA GWSNFVHNKK LLPGDSVVFV REEDGKVHIG LRRAKRVFCG GNAGRSGAAV AGPSDGKVPA EDVVEAARLA AAGQPFEVVH YPRASAPEFC VRADAVKESM RSPWCPGLRF KMAFETEDLS RISWFMGTIA GVEPADPARW PLSPWRLLQV TWDEPELLQN VKRVCPWRVE LVSSMPNLPW FSPPPRKKPR TPAYTETLSE SERQQLFDPA FPFPPTPPLP FFSDLHLSKY LEQSLLSYGI RPADHQAPPA PRIDTDLKNG SPTPRSPSTE AKKGDDVKPP GTIMLFGRAI LTEEQMKRSN GSGGVPTSPR ATSSGDEKAS NTSDRSRSDV SHGSPAAKKI SPSSWRLWRS GDSSPSEFAL EPGQCKVFVE SETLGRNLDL SALGSLEELC ARLSSMFGIS NNAELRSHMV YRTISGEVKH IGDEPFSVFV KSARRITIYT DRRDAGSDNT GNR // ID A0A1B6QF04_SORBI Unreviewed; 968 AA. AC A0A1B6QF04; A0A1B6QEY1; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 05-JUL-2017, entry version 8. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG36480.1}; GN ORFNames=SORBI_3002G339800 {ECO:0000313|EMBL:KXG36480.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG36480.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG36480.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:KXG36480.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., RA Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., RA Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., RA Bharti A., Chapman J., Feltus F., Gowik U., Grigoriev I., Lyons E., RA Maher C., Martis M., Narechania A., Otillar R., Penning B., RA Salamov A., Wang Y., Zhang L., Carpita N., Freeling M., Gingle A., RA Hash C., Keller B., Klein P., Kresovich S., Mccann M., Ming R., RA Peterson D., Rahman M., Ware D., Westhoff P., Mayer K., Messing J., RA Sims D., Jenkins J., Shu S., Rokhsar D.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000761; KXG36480.1; -; Genomic_DNA. DR EMBL; CM000761; KXG36481.2; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 469 570 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 724 774 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 469 570 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 968 AA; 106257 MW; B6329AC3A7345E1A CRC64; MSSPAPPQQA PPAQPPPPPA AAPPTAVPTT VVSATPISVQ LPPIQPKPPP PQPQAQAQQQ PPPGSASGPQ PPTPAQLLNL GPQPPLYRGP ICWNSYCKDP DPNSFGRRGW KVRSGPPYSV YADLCGRCYS QFEQGIYCET FHSEEGGWRN CESCGRRVHC GCIVSIHKYQ LRDAGGVDCA KCARSTRAAM APPSPVWTAP IHTSQNVSDR RDIPVKSWRP PAGQISSQWR QTNLWSMSSV QSDLQQRLAF EFDRPSGSEK LLPGRTFIHA QERKFDDMHD RPTTPVGMNH IIRERDPNGH GQPTNMDPAY SYTLYHRDGS HPNNLHDPSH PGGENDSLSS RKVAMPEAST SADAGFKLDS HHPSNLKDDP PSLSVGLASN FASQNGQKDH IRIAPSQQQA QMASSSLQKQ FYSHTVTGYN EFQAQLRNGR PRMDAKARSQ LLPRYWPRIT DQELQHLSSD SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD ASGKEWIFQF RFWPNNNSRM YVLEGVTPCI QAMQLQAGDT VTFSRIDPEG KLIMGFRKAT NNSSEQEQIT KPANGAPATS EANGKVSGAD SSPNAAVSRQ NKVNIETKSS SPVEQATALK MDKDGLTQKE GPGTASSSPG SVKRKTTNLG QKNKRLRMDN EESMELKITW EEAQELLRPP PKAPSIVIVD GHEFEEYEEP PVLGRKTYFV ADKSGSDHQW AQCEDCSKWR KLPIDALLPS KWTCSDNKWD PERSSCEHAQ EISMEELAEI IPIKYAKKPK SRMESDAIDA SDGLDTLANL AILGEGEALP SQPTTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM LRREKKATTD TPRKKETGQS SEKVTQAVST PPVASASATS PPRKADGNAD GAEDMAVDHK VTSSPVKNHI DLNIQPDRDD EQSPKSGTAG LLSRDNPS // ID A0A1B6QJ97_SORBI Unreviewed; 299 AA. AC A0A1B6QJ97; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG37998.1}; GN ORFNames=SORBI_001G164800 {ECO:0000313|EMBL:KXG37998.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG37998.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG37998.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG37998.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 33829 MW; 17481EBCC2D60578 CRC64; MKNLDKNCRI CMEWQEHYYW NHMADDKKHF FKPMVGDFTE TMSIPARFAN NFNGHISEVI SLKSPSGKTW SIGVGSDTDE VVLQSGWKEF VSAHSIDEGD CMLFKYTGVS SFDVLVFDSS GCEKTWPHFT RNSSHGYKRI ESSAGLEEGP RLGCRRFKGG HDCTCTPQSL PSDGDDDDDD AHLELALHRS TSRSIPKRCK RKLYRDIEQV HGEVKDDDDE DDVGDAKTGY YFCKNGPVSE YHLKEQEKEE ISSIRVPVEP RNPVFVQVMH PTHVRSTKPG VVVSNLPGSL LPSEADYNL // ID A0A1B6QJA1_SORBI Unreviewed; 376 AA. AC A0A1B6QJA1; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG37996.1}; GN ORFNames=SORBI_001G164800 {ECO:0000313|EMBL:KXG37996.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG37996.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG37996.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG37996.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 376 AA; 42566 MW; 1923D2FD2567422D CRC64; MKNLDKNCRI CMEWQEHYYW NHMADDKKHF FKPMVGDFTE TMSIPARFAN NFNGHISEVI SLKSPSGKTW SIGVGSDTDE VVLQSGWKEF VSAHSIDEGD CMLFKYTGVS SFDVLVFDSS GCEKTWPHFT RNSSHGYKRI ESSAGLEEGP RLGCRRFKGG HDCTCTPQSL PSDGDDDDDD AHLELALHRS TSRSIPKRCK RKLYRDIEQV HGEVKDDDDE DDVGDAKTGY YFCKNGPVSE YHLKEQEKEE ISSIRVPVEP RNPVFVQVMH PTHVRSTKPG VVGISAEFAD KYLGATSRDV ILEKGGSKGK WHVRYNRNRF SRGLTGRGWS EFVADNGLLA HDVCLFELMV INGKLRRPTV TVHVLRKVRG AFVLLP // ID A0A1B6QJA2_SORBI Unreviewed; 246 AA. AC A0A1B6QJA2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38001.1}; GN ORFNames=SORBI_001G165100 {ECO:0000313|EMBL:KXG38001.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38001.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38001.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38001.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 27703 MW; 3A138156DCF29CFC CRC64; MSKPGKRSKE SNAYFYPDDK DGKDKYFFKV LVGEFRERLA VPDKFEQHFR GLIGNRVKLE SRCGHTFDAE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDGTSRLK VFIFDLSCCE KVPPCRVKRN HICGRETREI NTETSSTCGD LPLNVTASSS TSPSDSSGDS ISPEDQKSHY VPGYILPRRT YLTCVQMKKL KERVRASTST IPIYGCIVKK SNLRRGSQAM GFPSFTRERA TISETG // ID A0A1B6QJA5_SORBI Unreviewed; 263 AA. AC A0A1B6QJA5; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38003.1}; GN ORFNames=SORBI_001G165100 {ECO:0000313|EMBL:KXG38003.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38003.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38003.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38003.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 263 AA; 29522 MW; BC7B06F85890E012 CRC64; MFVIIKGWGL ASEEGAEMSK PGKRSKESNA YFYPDDKDGK DKYFFKVLVG EFRERLAVPD KFEQHFRGLI GNRVKLESRC GHTFDAEVAK NLGKVVLQTG WKEFVTAHDL NMGDFLVFKC DGTSRLKVFI FDLSCCEKVP PCRVKRNHIC GRETREINTE TSSTCGDLPL NVTASSSTSP SDSSGDSISP EDQKSHYVPG YILPRRTYLT CVQMKKLKER VRASTSTIPI YGCIVKKSNL RRGSQAMGFP SFTRERATIS ETG // ID A0A1B6QJA6_SORBI Unreviewed; 330 AA. AC A0A1B6QJA6; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38002.1}; GN ORFNames=SORBI_001G165100 {ECO:0000313|EMBL:KXG38002.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38002.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38002.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38002.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 37441 MW; C10B669EDEBA6D5C CRC64; MFVIIKGWGL ASEEGAEMSK PGKRSKESNA YFYPDDKDGK DKYFFKVLVG EFRERLAVPD KFEQHFRGLI GNRVKLESRC GHTFDAEVAK NLGKVVLQTG WKEFVTAHDL NMGDFLVFKC DGTSRLKVFI FDLSCCEKVP PCRVKRNHIC GRETREINTE TSSTCGDLPL NVTASSSTSP SDSSGDSISP EDQKSHYVPG YILPRRTYLT CVQMKKLKER VRASTSTIPI YGCIVKKSNL RRGSQAMDIP RVYADVHLPF ENQTLMLQCC GQSWDVRCIT HKGRPNRGKS LSQGWKQFAR DNKLQVGDLC LFELLENTKY TMNVHIIRAK // ID A0A1B6QJA7_SORBI Unreviewed; 393 AA. AC A0A1B6QJA7; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38005.1}; DE Flags: Fragment; GN ORFNames=SORBI_001G165400 {ECO:0000313|EMBL:KXG38005.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38005.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38005.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38005.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KXG38005.1}. SQ SEQUENCE 393 AA; 44726 MW; A624ABD299796187 CRC64; FAPFACSLVT RQRRDRARGC LLQTGQSARP PPPLFAVVSW GLSRERGRGG GALSHSPTGE SGPYIYMSRE WDFCDMDDGR NYFFKVMSGD FQSRMTIPNK FARRFGDKIP GKIKLKACNG CSCTVVVTRY PDKLVLEAGW EAFVSTHDIR LCDFLVFRYN GNFQFEVLIF DPSCCVKESS NVSENICDHV PRRHKDLIDN SSDFDTDHKP MQSPGSEEPT VNKMKDSNQC TKINISSSTC DLNASETGCA DISSSEDDQE ISSATKYIFS PSTHLTQMQR MKVENRVQGV CSSIPIFGSV MTKCNITRSP CYLSFYRKYA HQYLPSENQI LRLQRHGKVW KVLLRITKRN SMWLSHGWKQ FVGDNKLEIG DICLFELLKN QKILTINIHI IRK // ID A0A1B6QJA8_SORBI Unreviewed; 361 AA. AC A0A1B6QJA8; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG37997.1}; GN ORFNames=SORBI_001G164800 {ECO:0000313|EMBL:KXG37997.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG37997.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG37997.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG37997.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 353 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 353 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 40939 MW; 2EE855D3F8FD52B4 CRC64; MKNLDKNCRI CMEWQEHYYW NHMADDKKHF FKPMVGDFTE TMSIPARFAN NFNGHISEVI SLKSPSGKTW SIGVGSDTDE VVLQSGWKEF VSAHSIDEGD CMLFKYTGVS SFDVLVFDSS GCEKTWPHFT RNSSHGYKRI ESSAGLEEGP RLGCRRFKGG HDCTCTPQSL PSDGDDDDDD AHLELALHRS TSRSIPKRCK RKLYRDIEQV HGEVKDDDDE DDVGDAKTGY YFCKNGPVSE YHLKEQEKEE ISSIRVPVEP RNPVFVQGIS AEFADKYLGA TSRDVILEKG GSKGKWHVRY NRNRFSRGLT GRGWSEFVAD NGLLAHDVCL FELMVINGKL RRPTVTVHVL RKVRGAFVLL P // ID A0A1B6QJA9_SORBI Unreviewed; 313 AA. AC A0A1B6QJA9; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38000.1}; GN ORFNames=SORBI_001G165100 {ECO:0000313|EMBL:KXG38000.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38000.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38000.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38000.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 215 313 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 215 313 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 35622 MW; CD128E95A3B528B8 CRC64; MSKPGKRSKE SNAYFYPDDK DGKDKYFFKV LVGEFRERLA VPDKFEQHFR GLIGNRVKLE SRCGHTFDAE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDGTSRLK VFIFDLSCCE KVPPCRVKRN HICGRETREI NTETSSTCGD LPLNVTASSS TSPSDSSGDS ISPEDQKSHY VPGYILPRRT YLTCVQMKKL KERVRASTST IPIYGCIVKK SNLRRGSQAM DIPRVYADVH LPFENQTLML QCCGQSWDVR CITHKGRPNR GKSLSQGWKQ FARDNKLQVG DLCLFELLEN TKYTMNVHII RAK // ID A0A1B6QJB0_SORBI Unreviewed; 288 AA. AC A0A1B6QJB0; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38008.1}; GN ORFNames=SORBI_001G166000 {ECO:0000313|EMBL:KXG38008.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38008.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38008.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38008.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 288 AA; 31785 MW; 32C0B8AFBED72E88 CRC64; MARSGGSRTR MKKPCDCCKR YLDHLEQKNQ SLSCFLGHMT ANFKHSMVVP NRFAKQFGGR LSGTIKLESP NGNLYDVEVS EHLNKLMLGH GWEAFVDANH IEENDFLIFR HIEKSHFEVM IFDTDGCEKV FSCAGLRNTP CVQERSVDSV GISSSSCHDT TESSGSERFA RSEKSGSSNH GKTENMATTS SSSEESGEHV SWKSDMEETS DGSPNSKDSG GPAEPSYILP GMSGLSRSQK KIIEAKVRAI KSEVPIYIAI MRKTNAAVSK LMHRNHCFGL RAVHVIGC // ID A0A1B6QJB1_SORBI Unreviewed; 932 AA. AC A0A1B6QJB1; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38011.1}; GN ORFNames=SORBI_001G166100 {ECO:0000313|EMBL:KXG38011.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38011.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38011.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38011.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 428 526 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 639 737 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 836 929 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 428 526 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 639 737 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 836 929 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 932 AA; 105403 MW; 59E99C38F1E498A8 CRC64; MAGSGASSIQ KPCDACKRYL DHLDGKNQNV RSFLSPMTAS SKHSMVVPKR FLKHFAGKLS GIIKLESPNR GSYDVGIIEH CNNVVFRHGW GQFVESHHIK ENDYLLFRHV EGSCFKVLIF DSDGCEKVFP CAGIRSVEYV DISSSSHHET TESLASERFV RCQKGSSCHR GKTAKMAAAF SSSEESGENI PSKNKSSELD DLQTPLRQHY VLSQRSYLSE AQEERVIALI QEIQPESTAF IAVMCKSHVQ PPCPYLAISK GYALAHFPRK SMNVTLQRPG KSKKWHPKFC KRKDAQMLLK GQWMDFVRDN HVQEGDICIF LPTMAGRRST FTVYLIQATT TCSRGGSGKR GSLSRQKETA KKAATSSLYE DSGGEDSLSG YESIQLDHFK AFSKRNYVLS AWCHLTAEQE EKIVALVKKV QPEIPFLVVQ MKKSNVNHLR SDLVICKDYA AEHFPQESQF ITLERPGGRK WRTRLYVRPD GRAFMLTTRW QNFVHDNHFQ KDDICLFQPM PNEKGFRVMV HLLHEPSTRS SSLCRHVHGL NSHINRGVTP TAHVHEKSGS ERDSLSCQKE TTKKAGTSSL HEESGEDSLS GHESIQSDHV KAFSERNYVL SARCHLTAEQ EEEIITLVKK VQPAIPFLVI QMKKSNVNRL SSNLVICKGY AAQHFPQKSQ FITLERPRGK KWCSRLHVRP HERAYMLTTR WQNFVRDNQL RKDDICLFQP MPSEKGFRVM VHLLCEPRTR SSSLGGHAHG LNSHIKRVTS TAHVHEKSGS ENSGLLDLHK RQPVQQGHQV LNDCGGASSS KPPLYVVLGG TCLTPAQDKV VQEKAMAIKA EVSIFVATMN KKILGYNNEA FILDFSDAAE YLPDGKQSLT LRWQGQGRAW RTDLHNRLML ATGEWREFVR DSGLEDGDIC LFEPMKERLA MLVHIIRSKQ YS // ID A0A1B6QJB2_SORBI Unreviewed; 554 AA. AC A0A1B6QJB2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38006.1}; GN ORFNames=SORBI_001G165500 {ECO:0000313|EMBL:KXG38006.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38006.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38006.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38006.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 238 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 460 554 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 238 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 460 554 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 554 AA; 61899 MW; 3429B3CD69C48D5B CRC64; MAGQGPQVKK SCACCKMYKD HLHGKMKCFL MPMSANYRHS MTMPVRFMNQ FGGEISESMD IESPDGSVYA VKGIKYMNKM LPQCGWKAFV DAHPIDQNDS LLFQHIEKAR FKVLIIDPDG CEKVFPCNGI RISSSNIQER DKDYVDVSDS AHDRTKKLSR VRKRVSNCQG DCASQRRKAA RITTDSASSS EESGFDDDPK TNAAPDYVLS CTSILSDEQE EQVDGLIKQI QPETTVFVAL IKPGNVKPRR PTLVIPHAYA AAHFPYKNQV VTLQRPGKSK KWHPRLNVRK DRSSHMLSGV PWSHFVQDNH VQEGDICIFQ PLKTAGVWFT LMVHLIHQSK VGTLLHDEKN GNSPSPAGGT SSNRGRTMRS KANDLKIVHP NDGKAEAEVT PIARVKEEPA HQGPSNSKGH WTDDESGDSG GPSEAGLYIL SAHAHLTDEQ RNKVEDIVGS IQSQVPIYVA VMNKSSVAVT STCILYFGKE YSSKYLPHGE HTVTLVRNGK SVSWKVTMHA QKLIQGWRGF ARDNRLKLDD ICLFQLTKDD IKMLTMTVYI IRHV // ID A0A1B6QJB4_SORBI Unreviewed; 312 AA. AC A0A1B6QJB4; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38004.1}; GN ORFNames=SORBI_001G165200 {ECO:0000313|EMBL:KXG38004.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38004.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38004.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38004.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 215 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 215 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35637 MW; 4A362C989E16AFC0 CRC64; MRKPGKRSRE RHACFCSNHK DEKDKYFFKV LVGDFRERLA IPDKFVQRIR GLIANSVKLE SRCGHTFDVE VANSLGKLLL QTGWKEFVTA HDLSMGDFLV FKYDGTSRLK VFIFDLSCCE KVPQCRVKRN HICGRETREM QTEISSSCGD LPMNVTASSS TSLSDSSGDS ICPEDQKSQC VPGYILQRGT CLTCVQMKKL KERVRASTST IPIYGCIIKK GNVQGRSQTM DMPRVYAEVY LPFEDEILML QCCGKSWEVR CRIQKGNPGT KRFMKGWKRF ACDNKLQLGD LCLFELLENT KYTMNVHVVR AK // ID A0A1B6QJB6_SORBI Unreviewed; 579 AA. AC A0A1B6QJB6; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38007.1}; GN ORFNames=SORBI_001G165800 {ECO:0000313|EMBL:KXG38007.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38007.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38007.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38007.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011011; Znf_FYVE_PHD. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF57903; SSF57903; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|SAAS:SAAS00430958}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; Zinc {ECO:0000256|SAAS:SAAS00430958}; KW Zinc-finger {ECO:0000256|SAAS:SAAS00430958}. FT DOMAIN 283 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 481 577 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 283 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 481 577 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 579 AA; 65685 MW; 380DE6C200D8EFAA CRC64; MNTVCEVCGD IGYRQLLLCC RDCKRCAVHQ YCLDKVVFDA SLIKWFCYEC LQRHGEVICI SSQEKVSSER PPSHAHFRSP VHQLVTKSVE SVRDAEPWRN GKNESFATKY TSLNRIYSSV KKHNKKKSLM KPMGNCTSRK VRIAKVTTHT SAEASCSCES IGTESAQSNH GKNQQVDHEN PVASVRERSV DPISISCSSH DTIAASESSE RSTECQKASS CRHRKTVKMA TVSSSSEESG ENTISKNVSL KYVLAYRSYL SKAQNKRVMK LIQEIQPEFT IFISIMRRNN VAPPGPFLGI TKEYAVAHFP DKTTNVTLET PGKSKKWHPK FYKRDESRKN MLMGQWLDFV RDNHVQEGDI CLLLPTKDEI RYTFMIYVLH ETTHSGGGAG FQRIGPCPGS SSAKMASEIH IEEEPTTGEH VSLESDMQEI SHEPLESRDS DDPFERPPYY VPCRNPLSRS QKRIVEERVR AIRSEIPICV AVMKNNNIGV AQRWMLELCS GFASVYLPTM GQTILLQCEG KTWEAKMMFH NGRRWFLNGG WPNFARGNSL RVGDMCLFEL KAKESKLTMA VHIIRKEQF // ID A0A1B6QJB7_SORBI Unreviewed; 1143 AA. AC A0A1B6QJB7; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38010.1}; GN ORFNames=SORBI_001G166100 {ECO:0000313|EMBL:KXG38010.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38010.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38010.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38010.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 428 526 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 639 737 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 849 947 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1047 1140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 428 526 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 639 737 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 849 947 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1047 1140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1143 AA; 129410 MW; 5EADF8CF66AA62B2 CRC64; MAGSGASSIQ KPCDACKRYL DHLDGKNQNV RSFLSPMTAS SKHSMVVPKR FLKHFAGKLS GIIKLESPNR GSYDVGIIEH CNNVVFRHGW GQFVESHHIK ENDYLLFRHV EGSCFKVLIF DSDGCEKVFP CAGIRSVEYV DISSSSHHET TESLASERFV RCQKGSSCHR GKTAKMAAAF SSSEESGENI PSKNKSSELD DLQTPLRQHY VLSQRSYLSE AQEERVIALI QEIQPESTAF IAVMCKSHVQ PPCPYLAISK GYALAHFPRK SMNVTLQRPG KSKKWHPKFC KRKDAQMLLK GQWMDFVRDN HVQEGDICIF LPTMAGRRST FTVYLIQATT TCSRGGSGKR GSLSRQKETA KKAATSSLYE DSGGEDSLSG YESIQLDHFK AFSKRNYVLS AWCHLTAEQE EKIVALVKKV QPEIPFLVVQ MKKSNVNHLR SDLVICKDYA AEHFPQESQF ITLERPGGRK WRTRLYVRPD GRAFMLTTRW QNFVHDNHFQ KDDICLFQPM PNEKGFRVMV HLLHEPSTRS SSLCRHVHGL NSHINRGVTP TAHVHEKSGS ERDSLSCQKE TTKKAGTSSL HEESGEDSLS GHESIQSDHV KAFSERNYVL SARCHLTAEQ EEEIITLVKK VQPAIPFLVI QMKKSNVNRL SSNLVICKGY AAQHFPQKSQ FITLERPRGK KWCSRLHVRP HERAYMLTTR WQNFVRDNQL RKDDICLFQP MPSEKGFRVM VHLLCEPRTR SSSLGGHAHG LNSHIKRVTS TAHVHEKSGS ERGSLSCQKE TANKARTSSL YEESEEGTLS GYESTQLDHV KAFSERYYVL SARCHLTAEQ KEKIVALVKK VQPEIPVLVV KMKKINVKRL NSNLVICKGY AAQHFPQESQ FITLECPGGK RWHPKLHVRP DGRGYMLSTQ WKNFVRDNRL REDDICLFQP MPSEKGFRVM AHLLRERSTR SSSSDGHVHG LHSHIERGLA STAHVHEKSG SENSGLLDLH KRQPVQQGHQ VLNDCGGASS SKPPLYVVLG GTCLTPAQDK VVQEKAMAIK AEVSIFVATM NKKILGYNNE AFILDFSDAA EYLPDGKQSL TLRWQGQGRA WRTDLHNRLM LATGEWREFV RDSGLEDGDI CLFEPMKERL AMLVHIIRSK QYS // ID A0A1B6QJB8_SORBI Unreviewed; 773 AA. AC A0A1B6QJB8; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38012.1}; GN ORFNames=SORBI_001G166100 {ECO:0000313|EMBL:KXG38012.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38012.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38012.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38012.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 428 526 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 639 737 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 428 526 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 639 737 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 773 AA; 87606 MW; 1CF78D5DE8255081 CRC64; MAGSGASSIQ KPCDACKRYL DHLDGKNQNV RSFLSPMTAS SKHSMVVPKR FLKHFAGKLS GIIKLESPNR GSYDVGIIEH CNNVVFRHGW GQFVESHHIK ENDYLLFRHV EGSCFKVLIF DSDGCEKVFP CAGIRSVEYV DISSSSHHET TESLASERFV RCQKGSSCHR GKTAKMAAAF SSSEESGENI PSKNKSSELD DLQTPLRQHY VLSQRSYLSE AQEERVIALI QEIQPESTAF IAVMCKSHVQ PPCPYLAISK GYALAHFPRK SMNVTLQRPG KSKKWHPKFC KRKDAQMLLK GQWMDFVRDN HVQEGDICIF LPTMAGRRST FTVYLIQATT TCSRGGSGKR GSLSRQKETA KKAATSSLYE DSGGEDSLSG YESIQLDHFK AFSKRNYVLS AWCHLTAEQE EKIVALVKKV QPEIPFLVVQ MKKSNVNHLR SDLVICKDYA AEHFPQESQF ITLERPGGRK WRTRLYVRPD GRAFMLTTRW QNFVHDNHFQ KDDICLFQPM PNEKGFRVMV HLLHEPSTRS SSLCRHVHGL NSHINRGVTP TAHVHEKSGS ERDSLSCQKE TTKKAGTSSL HEESGEDSLS GHESIQSDHV KAFSERNYVL SARCHLTAEQ EEEIITLVKK VQPAIPFLVI QMKKSNVNRL SSNLVICKGY AAQHFPQKSQ FITLERPRGK KWCSRLHVRP HERAYMLTTR WQNFVRDNQL RKDDICLFQP MPSEKGFRVM VHLLCEPRTR SSSLGGHAHG LNSHIKRVTS TAHVHEKSGS MDT // ID A0A1B6QJC2_SORBI Unreviewed; 721 AA. AC A0A1B6QJC2; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38016.1}; GN ORFNames=SORBI_001G166900 {ECO:0000313|EMBL:KXG38016.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38016.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38016.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:KXG38016.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA Mccann M.C., Ming R., Peterson D.G., Rahman M., Ware D., Westhoff P., RA Mayer K.F., Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.S.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38016.1; -; Genomic_DNA. DR EMBL; CM000760; KXG38017.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 427 525 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 659 718 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 427 525 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 659 718 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 721 AA; 81628 MW; 65BEC06867A88022 CRC64; MARRGASRIQ TPCDACKRYL DHLDEKNKNV RSFLSPMTAS SKHSMVVPKR FLKHFAGKLS GTIKLDSPNR GSYDVEVTEH CNKVVFRHGW RQFVESHDIK ENDYLLFRHV EGSCFEVLIF DTDGCEKMFS CAGIRSVDYV NISSDCHHET TESSASERFV RCQKGSSCHH GKIAKKVAAF SSSESGEDIP SENKSSESDD LQTPLRQHYV LSRRNYLSKA QEERVIALIQ EIQPESTAFV AVMRKSHVQP PCPYLVISKG YALAHFPHKS TNVTLQTPGK SKKWHPKFYK RKDGQLYMLK EQWMDFVRDN HVQEGDICLF LPTMAGRRST FTVYLIQATS TCSRGGSGKR GSLSHQKEIA KKAAVSSLYE ESGEDSLSGY ESIQSDHVKA FSECNYVLSA RCHLTVEQEK KIVGLFKKVQ PEIPFLVIQM KKSNVNHLRS DLVICKRYAA QHFPEESQSI TLERQGGKKW RSKLHVRPDG SGYLLTTGWQ NFVRDNHLQE DDICLFQPMP SKKGFRVMVH LLHDPSTRSS SSGGHAHGLN SHVKRRVTST AHVHEKSGSE NSGSLDLHKC RSVQQVHQVF SDCEVVPSSS MPPLYVVLGG TCLTPAQDKV VQEKAMAIKA EVSIFVATMN DKIVGYHYEP VILDLSDAAQ YLPDGKQSLT LRQQGKAWHT NLHNRLMLAT GEWHQFVRDN GLEDRDICLF EPMKNERLAM LVHIIRSQQY S // ID A0A1B6QJD3_SORBI Unreviewed; 357 AA. AC A0A1B6QJD3; DT 02-NOV-2016, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 1. DT 10-MAY-2017, entry version 6. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KXG38009.1}; GN ORFNames=SORBI_001G166000 {ECO:0000313|EMBL:KXG38009.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG38009.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:KXG38009.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; KXG38009.1; -; Genomic_DNA. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 39929 MW; 2AE9EE3FC29E42EF CRC64; MNLVMARSGG SRTRMKKPCD CCKRYLDHLE QKNQSLSCFL GHMTANFKHS MVVPNRFAKQ FGGRLSGTIK LESPNGNLYD VEVSEHLNKL MLGHGWEAFV DANHIEENDF LIFRHIEKSH FEVMIFDTDG CEKVFSCAGL RNTPCVQERS VDSVGISSSS CHDTTESSGS ERFARSEKSG SSNHGKTENM ATTSSSSEES GEHVSWKSDM EETSDGSPNS KDSGGPAEPS YILPGMSGLS RSQKKIIEAK VRAIKSEVPI YIAIMRKTNA AVSKLEFGTK YAAAHLPASE QTMVLQCKRK IWEARMKVTS GHRRFLGRGW TTFVRDNGLR VGDLCLFELK NERKLIMEVH IISREQF // ID A1XPK8_WHEAT Unreviewed; 688 AA. AC A1XPK8; DT 06-FEB-2007, integrated into UniProtKB/TrEMBL. DT 06-FEB-2007, sequence version 1. DT 07-JUN-2017, entry version 56. DE SubName: Full=VIVIPAROUS1 protein {ECO:0000313|EMBL:ABF48530.1}; GN Name=Vp-1Bb {ECO:0000313|EMBL:ABF48530.1}; GN Synonyms=Vp-1B {ECO:0000313|EMBL:ACM90521.1}; GN ORFNames=TRAES_3BF066400010CFD_c1 {ECO:0000313|EMBL:CDM85587.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:ABF48530.1}; RN [1] {ECO:0000313|EMBL:ABF48530.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=17630295; DOI=10.1093/jxb/erm073; RA Yang Y., Ma Y.Z., Xu Z.S., Chen X.M., He Z.H., Yu Z., Wilkinson M., RA Jones H.D., Shewry P.R., Xia L.Q.; RT "Isolation and characterization of Viviparous-1 genes in wheat RT cultivars with distinct ABA sensitivity and pre-harvest sprouting RT tolerance."; RL J. Exp. Bot. 58:2863-2871(2007). RN [2] {ECO:0000313|EMBL:ABF48530.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=17712543; DOI=10.1007/s00122-007-0624-z; RA Yang Y., Zhao X.L., Xia L.Q., Chen X.M., Xia X.C., Yu Z., He Z.H., RA Roder M.; RT "Development and validation of a Viviparous-1 STS marker for pre- RT harvest sprouting tolerance in Chinese wheats."; RL Theor. Appl. Genet. 115:971-980(2007). RN [3] {ECO:0000313|EMBL:ACM90521.1} RP NUCLEOTIDE SEQUENCE. RA Gao D.Y., Xia L.Q., Xu Z.S., Ma Y.Z.; RT "Cloning and Functional Analysis of Resistance to Pre-harvest RT Sprouting Related Vp-1 Gene in Wheat."; RL Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:CDM85587.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DQ517494; ABF48530.1; -; Genomic_DNA. DR EMBL; FJ640559; ACM90521.1; -; mRNA. DR EMBL; HG670306; CDM85587.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 531 633 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 531 633 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 688 AA; 72802 MW; 304657B06B586FFE CRC64; MDASAGSSPP RHSQGDAPRR GGPHRGKGPA VEIRQGEDDF MFAQDTFPAL PDFPCLSSPS SSTFSSSSSS NSSSAFAAPA GAGGRGAEGA RGEPSEPAAA GDGMDDLSDI DHLLDFASIN DDVPWDDEPL FPDVGMMLED VISEQQLQQP PAGHGTAGRT ASHAASGGGE DAFMGGGGTG SAADDLPLFF MEWLKNNRDC ISAEDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW VQNHHLQKKR PRVGAMDQEA PPAGGQLPSP GANPGYEFPA ETGAAAATSW MPYQAFSPTG SYGGEAIYPF QQGCSTSSVA VSSQPFSPPA APDMHAGAWP LQYAAFVPAG ATSAGTQTYP MPPPGAVPQP FAAPGFAGQF PQRMEPAATR EARKKRMARQ RRLSCLQQQR SQQLNLSQIQ TGGFPQEQSP RAAHSAPVTP PSSGWGGLWT QQAVQGQLMV QVPNPLSTKS NSSRQKQQKP SPDAAARPPS GGAATPHRPG QASASNKQRQ QGARTPAAAP AAGDKNLRFL LQKVLKQSDV GTLGRIVLPK KEAETHLPEL KTGDGISIPI EDIGTSQVWS MRYRFWPNNK SRMYLLENTG DFVRSNELQE GDFIVLYSDV KSGKYLIRGV KVRAQQDLAK HKNASPEKGG ASDVKAGGED GGCKEKSPHG VRRSRQEASS MNQMAVSI // ID A2Q532_MEDTR Unreviewed; 682 AA. AC A2Q532; DT 06-MAR-2007, integrated into UniProtKB/TrEMBL. DT 06-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 70. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g014770 {ECO:0000313|EMBL:AES63915.1}; GN ORFNames=MtrDRAFT_AC158497g40v2 {ECO:0000313|EMBL:ABN08732.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880; RN [1] {ECO:0000313|EMBL:ABN08732.1} RP NUCLEOTIDE SEQUENCE. RA Town C.D.; RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ABN08732.1} RP NUCLEOTIDE SEQUENCE. RG The International Medicago Genome Annotation Group; RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AES63915.1, ECO:0000313|EnsemblPlants:AES63915, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES63915.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63915, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [4] {ECO:0000313|EMBL:AES63915.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [5] {ECO:0000313|EnsemblPlants:AES63915} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63915}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC158497; ABN08732.1; -; Genomic_DNA. DR EMBL; CM001218; AES63915.1; -; Genomic_DNA. DR RefSeq; XP_003593664.1; XM_003593616.2. DR ProteinModelPortal; A2Q532; -. DR EnsemblPlants; AES63915; AES63915; MTR_2g014770. DR GeneID; 11437792; -. DR Gramene; AES63915; AES63915; MTR_2g014770. DR KEGG; mtr:MTR_2g014770; -. DR KO; K14486; -. DR OMA; QSPRLYE; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 74201 MW; 4BEF126D183DDE2F CRC64; MGLIDLNTTE DDETPYSAIS SSSSSSHSGI STSASAAMVV PPPLPPQGSV CLELWHACAG PLISLPKKGS IVVYVPQGHF EQAHDFPVSA CNIPPHVFCR VLDVKLHAEE GSDEVYCQVL LVPENQQLEQ NVREGVIDAD AEEEDTEAIV KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYG QQRPSQELVA KDLHGSEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAV QLKSSGSFGG LSGMQLDPGS LMDVVNALSK RSAFSVCYNP RVSSSEFIIP VNKFLKSLDC SYSAGMRFRM RFETEDAAER RFTGLIAGIS DADPVRWPGS KWKCLLVRWD DIEASRHNNR VSPWEIEPSG SASNSSNLMA ASLKRTRIGF TSAKLEFPVP NGIGASDFGE SLRFRKVLQG QEIMGMNTPY DSINAQSPRL YELGRCYPGS NCSGIAATGN IRMHPAASDF PSNGIGFGES FRFQKVLQGQ EILLCPPYGR ASFDEARGSG CIGRYDGYPM LGSRNGWPAQ MHDAATHLHA SVTSGQVSSP SSVLMFQQAV NPVSNSRYDN INLNQGSYIS EAKSGMFAPS LSDKPILSSG LALEGTTSFG VHDFHNNNNL LDGSRSRDSV LAMRDNQDMV SCKTGCRLFG FSLTDDTHIG GG // ID A2WKH5_ORYSI Unreviewed; 316 AA. AC A2WKH5; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 73. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY72471.1}; GN ORFNames=OsI_00326 {ECO:0000313|EMBL:EAY72471.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY72471.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY72471.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EAY72471.1; -; Genomic_DNA. DR ProteinModelPortal; A2WKH5; -. DR EnsemblPlants; BGIOSGA002747-TA; BGIOSGA002747-PA; BGIOSGA002747. DR Gramene; BGIOSGA002747-TA; BGIOSGA002747-PA; BGIOSGA002747. DR eggNOG; ENOG410JSZ2; Eukaryota. DR eggNOG; ENOG41108C9; LUCA. DR HOGENOM; HOG000237484; -. DR OMA; MERNKAT; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 177 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 177 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 35251 MW; 5E7CB85C50EA9035 CRC64; MEQEAAMVVF SCNSGSDGSS STTDSKQEEE EEELAAMEED ELIHVVQAAE LRLPSSTTAT RPSSRYKGVV PQPNGRWGAQ IYERHARVWL GTFPDEEAAA RAYDVAALRF RGRDAVTNRA PAAEGASAGE LAFLAAHSKA EVVDMLRKHT YDDELQQGLR RGSRAQPTPR WAREPLFEKA VTPSDVGKLN RLVVPKQQAE RHFPFPLRRH SSDAAGKGVL LNFEDGDGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLR PGDTVAFSRS AAAWGTEKHL LIDCKKMERN NLPTVDDDAR VVVKLFGVDI AGDKTR // ID A2WKH7_ORYSI Unreviewed; 369 AA. AC A2WKH7; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 74. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY72473.1}; GN ORFNames=OsI_00328 {ECO:0000313|EMBL:EAY72473.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY72473.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY72473.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EAY72473.1; -; Genomic_DNA. DR ProteinModelPortal; A2WKH7; -. DR EnsemblPlants; BGIOSGA002748-TA; BGIOSGA002748-PA; BGIOSGA002748. DR Gramene; BGIOSGA002748-TA; BGIOSGA002748-PA; BGIOSGA002748. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 183 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 183 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 369 AA; 39653 MW; 890A80A8EE9C0AC6 CRC64; MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA AAVAQQSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA ALRYRGRDAA TNFPGAAASA AELAFLAAHS KAEIVDMLRK HTYADELRQG LRRGRGMGAR AQPTPSWARE PLFEKAVTPS DVGKLNRLVV PKQHAEKHFP LRRAASSDSA SAAATGKGVL LNFEDGEGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTIVFSRS AYGPDKLLFI DCKKNNAAVA ATTTCAGDER PTTTTSGAEP RVVRLFGVDI AGGDCRKRER AVEMGQEAFL LKRQCVVHQR TPVLGALLL // ID A2WU11_ORYSI Unreviewed; 361 AA. AC A2WU11; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 70. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY75457.1}; GN ORFNames=OsI_03358 {ECO:0000313|EMBL:EAY75457.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY75457.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY75457.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EAY75457.1; -; Genomic_DNA. DR ProteinModelPortal; A2WU11; -. DR EnsemblPlants; BGIOSGA000982-TA; BGIOSGA000982-PA; BGIOSGA000982. DR Gramene; BGIOSGA000982-TA; BGIOSGA000982-PA; BGIOSGA000982. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 104 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 184 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 104 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 184 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 39605 MW; 8CBE16DB93301526 CRC64; MAGRSDNGDG ALTKCVNQEE LHHDEHFSFI YKWKNKISSA GNARLYYHYG YNFGMISSKS ELRKIYERHQ RVWLGTFAGE DDAARAYDVA AQRFRGRDAV TNFRPLAEAD PDAAAELRFL ATRSKAEVVD MLRKHTYFDE LAQSKRTFAA STPSAATTTA SLSNGHLSSP RSPFAPAAAR DHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLQLPSAGGE SKGVLLNFED AAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDVV GFYRSAASAG DDGKLFIDCK LVRSTGAALA SPADQPAPSP VKAVRLFGVD LLTAPAPVEQ MAGCKRARDL AATTPPQAAA FKKQCIELAL V // ID A2WUM3_ORYSI Unreviewed; 703 AA. AC A2WUM3; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 57. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY75669.1}; GN ORFNames=OsI_03575 {ECO:0000313|EMBL:EAY75669.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY75669.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY75669.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EAY75669.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA004375-TA; BGIOSGA004375-PA; BGIOSGA004375. DR Gramene; BGIOSGA004375-TA; BGIOSGA004375-PA; BGIOSGA004375. DR eggNOG; ENOG410JVSD; Eukaryota. DR eggNOG; ENOG41105MW; LUCA. DR HOGENOM; HOG000238236; -. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 595 636 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 703 AA; 80516 MW; 7293C50D80B0370E CRC64; MALTAKEIPQ GFLIHIPEVD HSTFDASLPS SAKGTLQNSE GKTWPVELEK LDGHVFLTTG WAKFVEDNSL REYEFLLFRY DDNMHFMVLP FGLNACEKVI RSSGSPQGKL PCDIFCCTKR GRDGDRLTEA ANSLTPSHSQ VLQRTTQGHE LISPQSFPDQ HEVCGSKDGL DEHLSLNGPM EDDKANAIAE VMSILDVDKV TVELFCAMLV FYKWNVDAVA EDFDICRGKP QIQNLFLKHK LHFQFDIVKR KLRKFFPPDD YYSSPILESR KCSLEEPKLS NQPLQCDLTT EKCRLVDEHD LCNFSQKKRR KRGSFCSPET PRRSPRLARQ NNSHDSAENT LKERSEERQP SPDSMIDQAE SRSEQACLCH DKTDSGSLFQ DSKKVKPAHG EVDLCEEPQH NQGENEGNLD QVNNKETDEE QIERNAVETS ESFTRRGCIK SSPASCEVPA CLRINELSLT WKPAEHVNPL EKVLLDIQRD NFMKTISHVQ GIIRNHPSDL LTADVITVVV QKEIFKWNCC LKDRDAQRIV NALLEHARKI KEMHNFNSEM RKEEFSAKLK VHLKWQLKEV ETIYTSLELD YKKATSDDNI AFSMLHDKKK KLHNLQDEIT GLQQSLEMKK DEMQKLAHQV AEHESVFQKS LMERLRIKEV MKGYEQTLAE VKVQLTSTEV GSIDIEALVK VEMDNMTKEI ELSKESLLNI TFH // ID A2WY33_ORYSI Unreviewed; 673 AA. AC A2WY33; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 60. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY76879.1}; GN ORFNames=OsI_04836 {ECO:0000313|EMBL:EAY76879.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY76879.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY76879.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EAY76879.1; -; Genomic_DNA. DR ProteinModelPortal; A2WY33; -. DR EnsemblPlants; BGIOSGA000302-TA; BGIOSGA000302-PA; BGIOSGA000302. DR Gramene; BGIOSGA000302-TA; BGIOSGA000302-PA; BGIOSGA000302. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR HOGENOM; HOG000238584; -. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 576 671 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 576 671 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 75411 MW; 3B158E58E93A648A CRC64; MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC ERNKRQSRKR KPGRKTGYPA DNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR TPGDCFGVPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTCPD IGQGNTYPDI DAAPDDCKKD KDVLHSECNK VAQKAHYSVK QDITKDGPRQ IAAEIMSSDP KTCELTYVRK NSVQPGTSSV SQWNNSKGQE SGGTKSCVVL AVAANSKKFC ITIPPPDQTW LELPRRLPVL PRTKKQARKI LILKDPSMRF WPVLYQCTPK FNGFIAGWAD ISRENNLREG DTCEFELCSN SELSFQVLVP NLQ // ID A2WY76_ORYSI Unreviewed; 727 AA. AC A2WY76; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 64. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY76922.1}; GN ORFNames=OsI_04880 {ECO:0000313|EMBL:EAY76922.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY76922.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY76922.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EAY76922.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA000276-PA; -. DR EnsemblPlants; BGIOSGA000276-TA; BGIOSGA000276-PA; BGIOSGA000276. DR Gramene; BGIOSGA000276-TA; BGIOSGA000276-PA; BGIOSGA000276. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR HOGENOM; HOG000238595; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 536 638 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 536 638 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 727 AA; 75883 MW; 131BCE50F459F34C CRC64; MDASAGSSAP HSHGNPGKQG GGGGGGGRGK APAAEIRGEA ARDDVFFADD TFPLLPDFPC LSSPSSSTFS SSSSSNSSSA FTTAAGGGCG GEPSEPASAA DGFGELADID QLLDLASLSV PWEAEQPLFP DDVGMMIEDA MSGQPHQADD CTGDGDTKAV MEAAGGGDDA GDACMEGSDA PDDLPAFFME WLTSNREYIS ADDLRSIRLR RSTIEAAAAR LGGGRQGTMQ LLKLILTWVQ NHHLQKKRPR TAIDDGAASS DPQLPSPGAN PGYEFPSGGQ EMGSAAATSW MPYQAFTPPA AYGGDAMYPG AAGPFPFQQS CSKSSVVVSS QPFSPPTAAA AGDMHASGGG NMAWPQQFAP FPVSSTSSYT MPSVVPPPFT AGFPGQYSGG HAMCSPRLAG VEPSSTKEAR KKRMARQRRL SCLQQQRSQQ LNLSQIHISG HPQEPSPRAA HSAPVTPSSA GCRSWGIWPP AAQIIQNPLS NKPNPPPATS KQPKPSPEKP KPKPQAAATA GAESLQRSTA SEKRQAKTDK NLRFLLQKVL KQSDVGSLGR IVLPKKEAEV HLPELKTRDG VSIPMEDIGT SQVWNMRYRF WPNNKSRMYL LENTGDFVRS NELQEGDFIV IYSDIKSGKY LIRGVKVRRA AQEQGNSSGA VGKHKHGSPE KPGVSSNTKA AGAEDGTGGD DSAEAAAAAA AGKADGGGCK GKSPHGVRRP RQEAAAAASM SQMAVSI // ID ARFF_ORYSI Reviewed; 908 AA. AC A2X1A1; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 60. DE RecName: Full=Auxin response factor 6; DE AltName: Full=OsARF6a; GN Name=ARF6; Synonyms=ARF6A; ORFNames=OsI_005844; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [2] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EAY84611.1; -; Genomic_DNA. DR ProteinModelPortal; A2X1A1; -. DR SMR; A2X1A1; -. DR STRING; 39946.BGIOSGA007604-PA; -. DR EnsemblPlants; BGIOSGA007604-TA; BGIOSGA007604-PA; BGIOSGA007604. DR Gramene; BGIOSGA007604-TA; BGIOSGA007604-PA; BGIOSGA007604. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 908 Auxin response factor 6. FT /FTId=PRO_0000299259. FT DOMAIN 777 861 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 134 236 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 454 592 Gln-rich. SQ SEQUENCE 908 AA; 100847 MW; 581072770ED932C3 CRC64; MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWMNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLMWLRDSQ NTGFQSLNFG GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AALQNTTKQV SPAMLQFQQP QNIVGRSSLL SSQILQQAQP QFQQMYHQNI NGNSIQGHSQ PEYLQQPLQH CQSFNEQKPQ LQPQQQQQES HQQQPQHQQM QQQKHLSNFQ TVPNALSVFS QLSSTPQSTP STLQTVSPFS QQHNFPDTNI SCLSPSNVSS MHDTLRSFPS EAASDLPGVP RITPVPVSDP WSSKRVAVES TITSRPHDIS SQIENFDLTP SSIPQNSTLA PLPGRECLVD QDGSSDPQNH FLFGVNIDSQ SLLMQDGIPS LHNENSSSTI PYSTSNFLSP SQDDYPLSQT LTTPGCLDES GYVPCSDNAD QVKRPHATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR QESRSLSTGI ASVGSVEF // ID A2X220_ORYSI Unreviewed; 289 AA. AC A2X220; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 62. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY84880.1}; GN ORFNames=OsI_06245 {ECO:0000313|EMBL:EAY84880.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY84880.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY84880.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EAY84880.1; -; Genomic_DNA. DR ProteinModelPortal; A2X220; -. DR EnsemblPlants; BGIOSGA006943-TA; BGIOSGA006943-PA; BGIOSGA006943. DR Gramene; BGIOSGA006943-TA; BGIOSGA006943-PA; BGIOSGA006943. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR HOGENOM; HOG000238878; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG09360KHU; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 31818 MW; 4E80C185E67301EE CRC64; MEEQMSNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEG EERELRDAKL LVAGVGRRRR GRMWDVKVVA DDGGAYLGRG WLRFARAHGL RDGDLLVFRY DGAAAFTVTV FDDGTMCRRA YHDAAGSGSS SDDDGNDGRG EAAATSQFVV TLRQGNLGKK QAQYLLTNQP TGRRSPAAMA AAAAEQNVPV EFQEAHGYAA REKVVLRMRG RSWTVRLKHT KGRRPRRERA VLRYGWHRFC ADNGLAVGDT CFFRALRSAG SGAGDVDDGD GDHVLSVTVH KADGGDPLE // ID A2X4H1_ORYSI Unreviewed; 267 AA. AC A2X4H1; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 10-MAY-2017, entry version 59. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY85731.1}; GN ORFNames=OsI_07096 {ECO:0000313|EMBL:EAY85731.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY85731.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY85731.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EAY85731.1; -; Genomic_DNA. DR ProteinModelPortal; A2X4H1; -. DR EnsemblPlants; BGIOSGA008149-TA; BGIOSGA008149-PA; BGIOSGA008149. DR Gramene; BGIOSGA008149-TA; BGIOSGA008149-PA; BGIOSGA008149. DR HOGENOM; HOG000239050; -. DR OMA; KRRTMKH; -. DR OrthoDB; EOG09360IMJ; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29406 MW; F42A5BFB1E1E0B1C CRC64; MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC GRLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARDVPSL GQARLHDGNQ DGGGAPSRHV PSLGRRVEAQ LSRVSSRRKR RTMKHSIPEP TIETPPILES MFLIAAPPAV KCLRLFGVNI YVLPVSSSGQ PKQESSP // ID A2X4H2_ORYSI Unreviewed; 271 AA. AC A2X4H2; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 10-MAY-2017, entry version 59. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY85732.1}; GN ORFNames=OsI_07097 {ECO:0000313|EMBL:EAY85732.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY85732.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY85732.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EAY85732.1; -; Genomic_DNA. DR ProteinModelPortal; A2X4H2; -. DR EnsemblPlants; BGIOSGA008150-TA; BGIOSGA008150-PA; BGIOSGA008150. DR Gramene; BGIOSGA008150-TA; BGIOSGA008150-PA; BGIOSGA008150. DR HOGENOM; HOG000239050; -. DR OMA; PFSGHAT; -. DR OrthoDB; EOG09360KAP; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 29664 MW; 0905C4341BFEE8AD CRC64; MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFHST ACGRFFICCR CTCMSFLSLP TTSHRIHGSS VLPQPRAAQA AHHPFSGHAT LCLGNKASDH SAPARHATAS LGCAAAQPPQ VPPTPTPRRR RRSMMVHPEP PEHTTDGMPV ILESMALVST PPVAKRVRLF GVYIDVPPLR PGGEATQDFN P // ID A2X8D1_ORYSI Unreviewed; 411 AA. AC A2X8D1; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 63. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY87091.1}; GN ORFNames=OsI_08488 {ECO:0000313|EMBL:EAY87091.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY87091.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY87091.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EAY87091.1; -; Genomic_DNA. DR ProteinModelPortal; A2X8D1; -. DR EnsemblPlants; BGIOSGA005835-TA; BGIOSGA005835-PA; BGIOSGA005835. DR Gramene; BGIOSGA005835-TA; BGIOSGA005835-PA; BGIOSGA005835. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 199 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 199 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 43874 MW; 9F1AD0E5CEA3B71C CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY FPLDAAANEK GLLLNFEDRA GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF SRGIGDEAAR HRLFIDWKRR ADTRDPLRLP RGLPLPMPLT SHYAPWGIGG GGGFFVPPSP PATLYEHRLR QGLDFRAFNP AAAMGRQVLL FGSARIPPQA PLLARAPSPL HHHYTLQPSG DGVRAAGSPV VLDSVPVIES PTTAAKRVRL FGVNLDNPHA GGGGAAAAGE SSNHGNALSL QTPAWMRRDP TLRLLELPPH HHHGAESSAA SSPSSSSSSK RDAHSALDLD L // ID A2XBV3_ORYSI Unreviewed; 308 AA. AC A2XBV3; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 64. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY88313.1}; GN ORFNames=OsI_09772 {ECO:0000313|EMBL:EAY88313.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY88313.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY88313.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EAY88313.1; -; Genomic_DNA. DR ProteinModelPortal; A2XBV3; -. DR EnsemblPlants; BGIOSGA011738-TA; BGIOSGA011738-PA; BGIOSGA011738. DR Gramene; BGIOSGA011738-TA; BGIOSGA011738-PA; BGIOSGA011738. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 33658 MW; 0CCB87E438427D74 CRC64; MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA AGARFLLPPS STPIYDHHRR HAHAVGYDAY AAATSRQVLF YRPLPPQQQH HPAVVLESVP VRMTAGHAEP PSAPSKRVRL FGVNLDCANS EQDHAGVVRK TAPPPLPSPP SSSSSSSGKA RCSLNLDL // ID A2XDA6_ORYSI Unreviewed; 237 AA. AC A2XDA6; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 62. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY88816.1}; GN ORFNames=OsI_10288 {ECO:0000313|EMBL:EAY88816.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY88816.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY88816.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EAY88816.1; -; Genomic_DNA. DR ProteinModelPortal; A2XDA6; -. DR EnsemblPlants; BGIOSGA011321-TA; BGIOSGA011321-PA; BGIOSGA011321. DR Gramene; BGIOSGA011321-TA; BGIOSGA011321-PA; BGIOSGA011321. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26570 MW; CA9E2BA1625ADE46 CRC64; MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPETPSPMK QKRRRIIEAA VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK // ID A2XJL8_ORYSI Unreviewed; 536 AA. AC A2XJL8; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 10-MAY-2017, entry version 63. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY91028.1}; GN ORFNames=OsI_12633 {ECO:0000313|EMBL:EAY91028.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY91028.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY91028.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EAY91028.1; -; Genomic_DNA. DR ProteinModelPortal; A2XJL8; -. DR EnsemblPlants; BGIOSGA013133-TA; BGIOSGA013133-PA; BGIOSGA013133. DR Gramene; BGIOSGA013133-TA; BGIOSGA013133-PA; BGIOSGA013133. DR HOGENOM; HOG000240246; -. DR OMA; MAGGNTH; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 536 AA; 60675 MW; 859C1FC77D53F562 CRC64; MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD NCLQEEDICL FVPTKGGRNF AFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI KEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS EIPICVATIS KLAGSGGKGK FRGLELSSRY ATSYLPDKNH QTLVLQCKGM IWQINLVVRR RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEVHIISNLQ RYPEVE // ID A2XJL9_ORYSI Unreviewed; 357 AA. AC A2XJL9; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 62. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY91029.1}; GN ORFNames=OsI_12634 {ECO:0000313|EMBL:EAY91029.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY91029.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY91029.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EAY91029.1; -; Genomic_DNA. DR ProteinModelPortal; A2XJL9; -. DR EnsemblPlants; BGIOSGA013134-TA; BGIOSGA013134-PA; BGIOSGA013134. DR Gramene; BGIOSGA013134-TA; BGIOSGA013134-PA; BGIOSGA013134. DR HOGENOM; HOG000240246; -. DR OMA; ANSTEMS; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 353 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 353 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 39885 MW; A9A48567A2755032 CRC64; MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTTDSMHS MIIPDRFVNH FGGKIPGTIK LESPNGILYV VEVTECMNKT VLQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG CERVFSCAGI KTSSCVHDKT VDPVDTSGRS SDDTAQPSRS ERFARCQRDT SNDRRNTASL TAVSSSSEES ENVSLKSNRN GVSDESQESE DSEGPAGPPY ILSWKSKRRL SSLQKKIIKE KVRSIQSEVP IYVAIMNKSN IGLISSPCQL ELGARYAAAV HLPDRRQAVV LQRMGQRWDT VMQTKSGRCT TRRFLINGWS RFVRDNRLCV GDICLLELKK HESKLTMTVH TIFSQQS // ID A2XJM2_ORYSI Unreviewed; 519 AA. AC A2XJM2; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 64. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY91032.1}; GN ORFNames=OsI_12638 {ECO:0000313|EMBL:EAY91032.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY91032.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY91032.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EAY91032.1; -; Genomic_DNA. DR ProteinModelPortal; A2XJM2; -. DR EnsemblPlants; BGIOSGA013136-TA; BGIOSGA013136-PA; BGIOSGA013136. DR Gramene; BGIOSGA013136-TA; BGIOSGA013136-PA; BGIOSGA013136. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR HOGENOM; HOG000240246; -. DR OMA; PHESQTI; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 416 516 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 416 516 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 519 AA; 59011 MW; 8403D3CC26E3ADEB CRC64; MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG CEKVFTCAGI KKTSSVQERN AAPVDISRST HDETTQSSGS KKIVRCQRAS DSQRGKTAKL AETSSSGESG EEGTDSSTSE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS HKRFDLRDGR TWPKVTGVRR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAKMITTGW RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS // ID A2XS35_ORYSI Unreviewed; 98 AA. AC A2XS35; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 58. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY93645.1}; GN ORFNames=OsI_15431 {ECO:0000313|EMBL:EAY93645.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY93645.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY93645.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EAY93645.1; -; Genomic_DNA. DR ProteinModelPortal; A2XS35; -. DR EnsemblPlants; BGIOSGA015306-TA; BGIOSGA015306-PA; BGIOSGA015306. DR Gramene; BGIOSGA015306-TA; BGIOSGA015306-PA; BGIOSGA015306. DR HOGENOM; HOG000241968; -. DR OMA; EACMIIL; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 98 AA; 10933 MW; 0F739BDC9120758A CRC64; MPAFMQSLAR TFCESIGLVE ESSITLMMID TTSTQGDQGG SSSSSRSWEV TGRRYKDACY LLGAGWRRFC EDNGVRSGDV CVFTVLDTTL WRVDIERC // ID A2XSR4_ORYSI Unreviewed; 194 AA. AC A2XSR4; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 55. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY93874.1}; GN ORFNames=OsI_15651 {ECO:0000313|EMBL:EAY93874.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY93874.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY93874.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EAY93874.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA015201-TA; BGIOSGA015201-PA; BGIOSGA015201. DR Gramene; BGIOSGA015201-TA; BGIOSGA015201-PA; BGIOSGA015201. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR HOGENOM; HOG000240752; -. DR OMA; HERVEFR; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 20587 MW; 27B15097088A9B62 CRC64; MASDPTELRC SSPESSGDAG AEDPAAVDAA EESGGEGGSG HIAAGTEAAP PRPPEPEPEK VARHGVLPLL GKPYFTCIMC KSHVQPPFQV VVPRSFAPLL PSRTTPATLS WRGRSWGMRF TGGRLIQRLE AGWRGFAVDN DLRLGDGCVF ELLVGGGGEQ ERVEFRVQVL RAEIPARIRG RAGGYTSATP IVID // ID A2XWR8_ORYSI Unreviewed; 400 AA. AC A2XWR8; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 60. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY95278.1}; GN ORFNames=OsI_17101 {ECO:0000313|EMBL:EAY95278.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY95278.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY95278.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EAY95278.1; -; Genomic_DNA. DR ProteinModelPortal; A2XWR8; -. DR EnsemblPlants; BGIOSGA014498-TA; BGIOSGA014498-PA; BGIOSGA014498. DR Gramene; BGIOSGA014498-TA; BGIOSGA014498-PA; BGIOSGA014498. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; DFRNINA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 400 AA; 42837 MW; 3E244B54A1F56419 CRC64; MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAQAT RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DANALSLRMP GWQRPAPLRS LELPPHMPAG AAGAESSAAS SPSSSSSSKR EAHSSLDLDL // ID A2XYY3_ORYSI Unreviewed; 433 AA. AC A2XYY3; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 10-MAY-2017, entry version 60. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY96043.1}; GN ORFNames=OsI_17916 {ECO:0000313|EMBL:EAY96043.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY96043.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY96043.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EAY96043.1; -; Genomic_DNA. DR ProteinModelPortal; A2XYY3; -. DR EnsemblPlants; BGIOSGA014094-TA; BGIOSGA014094-PA; BGIOSGA014094. DR Gramene; BGIOSGA014094-TA; BGIOSGA014094-PA; BGIOSGA014094. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR HOGENOM; HOG000241121; -. DR OMA; GFVKQHG; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 297 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 297 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 48627 MW; F97A515023F28249 CRC64; MADTRGSTSS GGGDDRGREG HDDFTGGGQY NRYHRILEAV PSPLVRSENV VHHQYPTGLI HHPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN FQDLRPMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTDAKK AKKSDIKDQP IVLRRSDTES EKNDELNQTP ASEPSSMSHN SANSTIRFNC REYRVILRKE LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE ECGFAISLLT KKT // ID A2XYY4_ORYSI Unreviewed; 530 AA. AC A2XYY4; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 60. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY96044.1}; GN ORFNames=OsI_17917 {ECO:0000313|EMBL:EAY96044.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY96044.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY96044.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EAY96044.1; -; Genomic_DNA. DR ProteinModelPortal; A2XYY4; -. DR EnsemblPlants; BGIOSGA014093-TA; BGIOSGA014093-PA; BGIOSGA014093. DR Gramene; BGIOSGA014093-TA; BGIOSGA014093-PA; BGIOSGA014093. DR HOGENOM; HOG000241121; -. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 368 470 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 368 470 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 58749 MW; 35115D52CD000990 CRC64; MADARGSSSS SGDGGGGEGN GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNVFYQNL TFNSWTSNNM PRNPVYTSFH PAAIEDHHAP LFHSNNHDID PEFLGNRHLH GVDIAGAPPA KATSPATAGG LLTNTAPATV SQIHARCRRR QIYRCCGLLP RAPPPSDPCA FARAAITAAR SARGLLSHLY GGLVFWLVGK RKLGEKRERK RKVVAEMDPP IVFRRSDMES EKNDDNPDQT PVSEPPSMNQ NGENLIIRFN CREYRVILRK ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVTLKMDDF KFETTWNFKY RFWPNNKSRM YVLESTGGFV KHHGLQTGDI FIIYKSSESE KFVSSVPFTS TTYGESDGED YNGDRSGPGA GEVADEDFRK PEFGWYCCAK INRKESEIRE QVSKEKVNSN // ID A2XZ93_ORYSI Unreviewed; 525 AA. AC A2XZ93; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 71. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_18032 {ECO:0000313|EMBL:EAY96153.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY96153.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY96153.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EAY96153.1; -; Genomic_DNA. DR ProteinModelPortal; A2XZ93; -. DR EnsemblPlants; BGIOSGA014036-TA; BGIOSGA014036-PA; BGIOSGA014036. DR Gramene; BGIOSGA014036-TA; BGIOSGA014036-PA; BGIOSGA014036. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 525 AA; 56829 MW; EFB9E81BA429115A CRC64; MARPPAATAP PPPPPPPPPP PPPIDRLVWL ACAAPLSRIP VVGTQVSYFP EGHAEQCPAP LPDPLPSAHR FFLCTITAVD LSADTTTGEP YATISLLPLR HDAPAPAPAA AELAEAESQE FRYYAKQLTQ SDANNGGGFS VPRLCADHIF PALNLDDDPP VQSLTMGDLQ GDSWEFRHIY RGTPRRHLLT TGWSKFVNAK QLVAGDTVVF MWCGAPAPER KLLVGVRRAA RYSGESACNA RGRVQPQEVM EAVRLAAEQA AFRVTYYPRH GAGEFVVPRV EVDKGLTTPW RCGMQVRAQV MEAEDTRRLA WLNGTLTNLR HQQIWRTLEV EWDASAASSS MKNRFVNPWQ VQPVDFPPLP MGLKISNNNI SAPVCNGDSL LVPPILMHPQ PQPPADIQGA RHNNGHAYAD IPSSSTPSMV RTQQLFPRGL QILVPHTDIV TPQNGSPPDN PVNTPLSASD GMKTIQLFGV TITSPVQGDT NGAFASAQVN QVPEGVDDET ATEEASDTSL PDSLTNGHNQ DGARL // ID A2Y761_ORYSI Unreviewed; 394 AA. AC A2Y761; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 72. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY98921.1}; GN ORFNames=OsI_20876 {ECO:0000313|EMBL:EAY98921.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY98921.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY98921.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000130; EAY98921.1; -; Genomic_DNA. DR ProteinModelPortal; A2Y761; -. DR EnsemblPlants; BGIOSGA020315-TA; BGIOSGA020315-PA; BGIOSGA020315. DR Gramene; BGIOSGA020315-TA; BGIOSGA020315-PA; BGIOSGA020315. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007015; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 123 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 193 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 123 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 193 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 394 AA; 41361 MW; 4B927EA61A22C759 CRC64; MDSTSCLLDD ASSGASTGKK AAAAAASKAL QRVGSGASAV MDAAEPGAEA DSGGERRGGG GGKLPSSKYK GVVPQPNGRW GAQIYERHQR VWLGTFTGEA EAARAYDVAA QRFRGRDAVT NFRPLAESDP EAAVELRFLA SRSKAEVVDM LRKHTYLEEL TQNKRAFAAI SPPPPKHPAS SPPSSAAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQLPPPTTTS SVAAAADAAA GGGECKGVLL NFEDAAGKVW KFRYSYWNSS QSYVLTKGWS RFVKDKGLHA GDAVGFYRAA GKNAQLFIDC KVRAKPTTAA AAAAFLSAVA AAAAPPPAVK AIRLFGVDLL TAAAPELQDA GGAAMTKSKR AMDAMAESQA HVVFKKQCIE LALT // ID A2Y8E1_ORYSI Unreviewed; 203 AA. AC A2Y8E1; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 63. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY99351.1}; GN ORFNames=OsI_21321 {ECO:0000313|EMBL:EAY99351.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY99351.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY99351.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EAY99351.1; -; Genomic_DNA. DR ProteinModelPortal; A2Y8E1; -. DR EnsemblPlants; BGIOSGA022090-TA; BGIOSGA022090-PA; BGIOSGA022090. DR Gramene; BGIOSGA022090-TA; BGIOSGA022090-PA; BGIOSGA022090. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; IDCRRRA; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 203 AA; 21842 MW; EABE883C4BAEB929 CRC64; MATIVAWESR NLQLQGGGGG HGGGGGGGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE KYFPLGPVAR TSPAGTVLCF EDARGGGGGG DSTWRFRYSY WSSSQSYVIT KGWSRYVRDK RLAAGDTVSF CRAGARLFID CRKRAASVSS SSLVPPALIK VQLPPSRPVV DEEEAACGRR CLRLFGVDLQ LRADASPALD LQL // ID A2Y8E2_ORYSI Unreviewed; 261 AA. AC A2Y8E2; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 10-MAY-2017, entry version 56. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY99352.1}; GN ORFNames=OsI_21322 {ECO:0000313|EMBL:EAY99352.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY99352.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY99352.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EAY99352.1; -; Genomic_DNA. DR ProteinModelPortal; A2Y8E2; -. DR EnsemblPlants; BGIOSGA022089-TA; BGIOSGA022089-PA; BGIOSGA022089. DR Gramene; BGIOSGA022089-TA; BGIOSGA022089-PA; BGIOSGA022089. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 241 260 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 37 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 28829 MW; 6225DA4B43C37098 CRC64; MATIVAWESR NLQLQGGGGG HGGGGGGGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE KYFPLGPAAR TSPAGTVLCF EDARGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVRNP SWAEYVSWAV QWLTAYWAFS RSVAGSLCSM APLRGAKRRR RRLQWRRPLR RVACPEQIAR RIDADGAPGE STALRARSYG CIRVFLVLSL LLLAVEVAAY L // ID A2Y8H3_ORYSI Unreviewed; 176 AA. AC A2Y8H3; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 10-MAY-2017, entry version 62. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY99383.1}; GN ORFNames=OsI_21351 {ECO:0000313|EMBL:EAY99383.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY99383.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY99383.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EAY99383.1; -; Genomic_DNA. DR ProteinModelPortal; A2Y8H3; -. DR EnsemblPlants; BGIOSGA022172-TA; BGIOSGA022172-PA; BGIOSGA022172. DR Gramene; BGIOSGA022172-TA; BGIOSGA022172-PA; BGIOSGA022172. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR HOGENOM; HOG000240752; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 176 AA; 18974 MW; 270C1D36DC6310AE CRC64; MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPPPPPASGS GEDWEATTPL AAGNPFFTAL IAKSHLHPKF QMWIPPRFQH RLAEPEARTA AVLHSGGKSW ATSYCGHLKM KKLDAGWSEF AVDNRLLVGD ACVFELVAMG AAGGLEFQVQ ILRGGLPAEV VTSKGLTSDQ PILIVD // ID A2YA88_ORYSI Unreviewed; 230 AA. AC A2YA88; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 65. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY99998.1}; GN ORFNames=OsI_22000 {ECO:0000313|EMBL:EAY99998.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY99998.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY99998.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EAY99998.1; -; Genomic_DNA. DR ProteinModelPortal; A2YA88; -. DR EnsemblPlants; BGIOSGA022464-TA; BGIOSGA022464-PA; BGIOSGA022464. DR Gramene; BGIOSGA022464-TA; BGIOSGA022464-PA; BGIOSGA022464. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 26754 MW; 3B4CD184D22E9469 CRC64; MAEAASYEEQ RRRQVEANKR KLEELRLHHL SAAVRESAAK PSPVKQRKRK ARALPGAGED APLRRSGRVA NLPEKPKYRD EFQDFEKRIR RSYGGKRRDL SNRVYATDEQ RDYAINAAQE LEEELGSDYP IFVKPMLQSH VTGGFWLSLP THFSRKYLPK RDETIRLVDE EDDEFDTLYL ANKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTKFKVYII RASSYYETDD // ID ARFP_ORYSI Reviewed; 1055 AA. AC A2YAA5; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor 16; GN Name=ARF16; ORFNames=OsI_021248; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [2] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EAZ00016.1; -; Genomic_DNA. DR ProteinModelPortal; A2YAA5; -. DR SMR; A2YAA5; -. DR STRING; 39946.BGIOSGA022468-PA; -. DR EnsemblPlants; BGIOSGA022468-TA; BGIOSGA022468-PA; BGIOSGA022468. DR Gramene; BGIOSGA022468-TA; BGIOSGA022468-PA; BGIOSGA022468. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 1055 Auxin response factor 16. FT /FTId=PRO_0000299273. FT DOMAIN 940 1024 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 127 229 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 489 714 Gln-rich. SQ SEQUENCE 1055 AA; 116889 MW; F95F09E05AD78441 CRC64; MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYVQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG SDSIGQLKQS PSQQAPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPST SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG // ID A2YFB1_ORYSI Unreviewed; 342 AA. AC A2YFB1; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 10-MAY-2017, entry version 62. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAZ01772.1}; GN ORFNames=OsI_23800 {ECO:0000313|EMBL:EAZ01772.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAZ01772.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAZ01772.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EAZ01772.1; -; Genomic_DNA. DR ProteinModelPortal; A2YFB1; -. DR EnsemblPlants; BGIOSGA020831-TA; BGIOSGA020831-PA; BGIOSGA020831. DR Gramene; BGIOSGA020831-TA; BGIOSGA020831-PA; BGIOSGA020831. DR eggNOG; ENOG410JQPS; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 37821 MW; 239951CBF711E982 CRC64; MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE EEESGRRAAA VLVVCPLGKV WRVELRRSPA GDGEAWLGGG WSELAAAHGL GEGWGVVLRL ERRGVASLRV FDPGFCLARF CTPHAGMRTK DRPRFIKLLQ QEDLEKMKIP EKFVQQHLTE TYTNNHQNAI IVCPLGKFWR VELQREQPDV LLRDGWAPFL AAHDLSEGNI LLFRYEGNMV FTVEVFLQNG CLKEYKTAAL YLTDGTEGPS NAPQQSAAKV GVSPVKRKRT RRIEGTCLEG PNRKSRASPI SVKVEPHKKH VSIVSQNSFT KEMTAYSIHS LLVSASASAV FI // ID ARFQ_ORYSI Reviewed; 917 AA. AC A2YG67; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 64. DE RecName: Full=Auxin response factor 17; GN Name=ARF17; ORFNames=OsI_023310; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [2] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EAZ02078.1; -; Genomic_DNA. DR ProteinModelPortal; A2YG67; -. DR SMR; A2YG67; -. DR STRING; 39946.BGIOSGA020682-PA; -. DR EnsemblPlants; BGIOSGA020682-TA; BGIOSGA020682-PA; BGIOSGA020682. DR Gramene; BGIOSGA020682-TA; BGIOSGA020682-PA; BGIOSGA020682. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 917 Auxin response factor 17. FT /FTId=PRO_0000299275. FT DOMAIN 786 870 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 134 236 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 440 603 Gln-rich. SQ SEQUENCE 917 AA; 101808 MW; 21058B077B16CC7D CRC64; MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL LMQGGIPSLQ GENDSTAIPY STSNFLSPLQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ ESRSLSTGIA SVGSVEF // ID A2YIU3_ORYSI Unreviewed; 407 AA. AC A2YIU3; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 58. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAZ03004.1}; GN ORFNames=OsI_25145 {ECO:0000313|EMBL:EAZ03004.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAZ03004.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAZ03004.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000132; EAZ03004.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA025272-TA; BGIOSGA025272-PA; BGIOSGA025272. DR Gramene; BGIOSGA025272-TA; BGIOSGA025272-PA; BGIOSGA025272. DR HOGENOM; HOG000242169; -. DR OMA; HRENRAG; -. DR OrthoDB; EOG09360CVW; -. DR Proteomes; UP000007015; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 407 AA; 44578 MW; 613B6242EE556D01 CRC64; MAAAAAPLAD DGDGIVDRAM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAAAAGGQQ LRYFVKTLMI SDFDFRIRFS APMADAKGVF PPLVDAKAVQ PLLVKDLHGS PMTFDYGRKG KRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDDDDGELY VGVRRQRTLE RPLRNTMRRY RPPTPPQAAV QEAVLAAAGH AAAGERFTVA YRSRQDGDEF VVPREAVEEG LRARLTSLAE VEFVWAVEDG APPIVGPRGK VTAIATGQLW RNLEIVWDGN SEMDMSANFW QVRPVEEVDI SPSTPPPKRL KNCEIDDTAS TSVSVDNGDE QVPTMRQRLE ALIPDNI // ID A2YIU7_ORYSI Unreviewed; 541 AA. AC A2YIU7; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 59. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_25149 {ECO:0000313|EMBL:EAZ03008.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAZ03008.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAZ03008.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000132; EAZ03008.1; -; Genomic_DNA. DR ProteinModelPortal; A2YIU7; -. DR EnsemblPlants; BGIOSGA025276-TA; BGIOSGA025276-PA; BGIOSGA025276. DR Gramene; BGIOSGA025276-TA; BGIOSGA025276-PA; BGIOSGA025276. DR HOGENOM; HOG000242170; -. DR OMA; MEFSNAN; -. DR OrthoDB; EOG093609VU; -. DR Proteomes; UP000007015; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 353 451 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 353 451 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 541 AA; 55598 MW; D8ABB2EFB3BE38DF CRC64; MAADPNLPGR GGATSSPMVS SLGGVDGEGA PPPSPILAAL ALSTVSAASS APATGATVSP LVSNLGGVDG ESAPCAPPPS PTVPASSTVS AASSAPATGS TSSLSSLGGV DGEGAPCAPP PSPIPAGPAS STVSAASSAP ATRDYLGGIT GHRLGQEDDS GGHEYTSVSG IHVPSSSGVA FVSFGQCPQE VISSDLRLGL GPIAATAPLQ PPPPPAAAAA AGSPSATTPE PGHGEATPTT SSSAQFQTQA QQVTRDMWMA CAAPKSGRLP TVGSLVYYFP DGHAEQCLSR PQEPLPGRIF LCKVTDVRLG AAATNEALAT ISLVPIAADD HAFQLQAPAD PDPAPAQSQS LVSFVKPLTY TDVTKNRFMV PKDDAAAGVL PHIQLNDDVP LRIKDLSGKE WAFNYTWKAH TRMFRNGWME FSNANGLVTG DNAVFMRRGN GEMFMAVRRT RNRPAPFSVE EVIEAVWRAA RREPFEVSYC SRQDGDEFVV PRDIVDDGLR ARFAPGMAVN FVWAVEDGKL PTIGPQGEVI SIENYATSIG A // ID A2YQA9_ORYSI Unreviewed; 413 AA. AC A2YQA9; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 62. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAZ05270.1}; GN ORFNames=OsI_27472 {ECO:0000313|EMBL:EAZ05270.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAZ05270.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAZ05270.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000133; EAZ05270.1; -; Genomic_DNA. DR ProteinModelPortal; A2YQA9; -. DR EnsemblPlants; BGIOSGA027821-TA; BGIOSGA027821-PA; BGIOSGA027821. DR Gramene; BGIOSGA027821-TA; BGIOSGA027821-PA; BGIOSGA027821. DR eggNOG; ENOG410JDZ5; Eukaryota. DR eggNOG; ENOG41116M3; LUCA. DR HOGENOM; HOG000070867; -. DR OMA; KFIIRGE; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000007015; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 250 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 250 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 45977 MW; E7C854DA018FA807 CRC64; MEQHCPFPFS LAATACTEIY PGHCQYIPLF TSRNPNIYRR HDGAEPPHPH NHNHNHNIHN SHNHNHNHNA APHPCHTPTP TPTPRGFADW SASTSAFTSL AAHSSTAPSN AVHYSFSPCY AFWTHYMLNK NAYPTSFPAP HDDHLRLANN NHPTDAPGPA SSYGVESFTS PSMAPNICTH MPPIEGPISA KEDKKPEILP RVVKSSDELE TRNSNVEFHS ETVGTLPESK QGHDSRATKL LNSGEYQVIL RKELTKSDVG NVGRIVLPKK DAEASLPPLL QRDPLILHMD DMVLPVTWKF KYRYWPNNKS RMYILDSAGE FLKTHGLQAG DVIIIYKNLA PGKFQYPVST TFTVLVVCGA FLPVETSANK KKKSRTGGAG NRTPCLSHAK RALYHMSYTP DSSSKHNYVI YTP // ID A2YRE5_ORYSI Unreviewed; 286 AA. AC A2YRE5; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 63. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAZ05656.1}; GN ORFNames=OsI_27883 {ECO:0000313|EMBL:EAZ05656.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAZ05656.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAZ05656.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000133; EAZ05656.1; -; Genomic_DNA. DR ProteinModelPortal; A2YRE5; -. DR EnsemblPlants; BGIOSGA028020-TA; BGIOSGA028020-PA; BGIOSGA028020. DR Gramene; BGIOSGA028020-TA; BGIOSGA028020-PA; BGIOSGA028020. DR eggNOG; ENOG410JS8F; Eukaryota. DR eggNOG; ENOG41116NU; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; FNVECSG; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000007015; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 34 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 286 AA; 30649 MW; A0E9579567B24F61 CRC64; MYMDLTLGGA LLQVEEATEE EEEEEEEEQA LGQEPAPAAA AAALVLGRRH GVVVGGGGGG VVVAAEREHM FDKVVTPSDV GKLNRLVVPK QHAERFFPAA AAGTQLCFED RAGTPWRFRY SYWGSSQSYV MTKGWSRFVR AARLSAGDTV SFSRAADGRY FIDYRHCHRH GGRDISFASA ATAMPAAWPL FGRVQTAAPV SYGGGHGSAA AATMFLDTVA PVAAAGGHRG EVGPSGQRSF RLFGVNVECG GDVDAAAEEE DADDDVDDGD HRRGEEMELV MWTNHR // ID A2Z9R3_ORYSI Unreviewed; 312 AA. AC A2Z9R3; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 65. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EAY79347.1}; GN ORFNames=OsI_34476 {ECO:0000313|EMBL:EAY79347.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY79347.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY79347.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000135; EAY79347.1; -; Genomic_DNA. DR ProteinModelPortal; A2Z9R3; -. DR EnsemblPlants; BGIOSGA031489-TA; BGIOSGA031489-PA; BGIOSGA031489. DR Gramene; BGIOSGA031489-TA; BGIOSGA031489-PA; BGIOSGA031489. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000007015; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 33121 MW; 6EF81EC2D0A8500B CRC64; MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAERY FPLDAAAGAG GGGGGGGGGG GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGSFM FPPTAAPPSH SHHHHQRHHP PLPSVPLCPW RDYTTAYGGG YGYGYGGGST PASSRHVLFL RPQVPAAVVL KSVPVHVAAA SAVQEAATTT RPKRVRLFGV NLDCPAAMDD DDDIAGAASR TAALSLLQLP SPSSSTSSST AGKKMCSLDL GL // ID ARFW_ORYSI Reviewed; 853 AA. AC A2ZET6; Q9FR78; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor 23; DE AltName: Full=OsARF1; GN Name=ARF23; Synonyms=ARF1; ORFNames=OsI_035079; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Qian X., Liu J., Yang J.; RT "Rice ARF family gene."; RL Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [3] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF140228; AAG43286.2; -; mRNA. DR EMBL; CM000136; EAY81120.1; -; Genomic_DNA. DR ProteinModelPortal; A2ZET6; -. DR SMR; A2ZET6; -. DR EnsemblPlants; BGIOSGA033901-TA; BGIOSGA033901-PA; BGIOSGA033901. DR Gramene; BGIOSGA033901-TA; BGIOSGA033901-PA; BGIOSGA033901. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007015; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 853 Auxin response factor 23. FT /FTId=PRO_0000299282. FT DOMAIN 725 809 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 149 251 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 7 34 Gly-rich. FT CONFLICT 34 34 Missing (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 60 60 V -> E (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 122 122 Q -> R (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 325 325 G -> S (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 481 481 W -> R (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 602 602 H -> L (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 653 653 L -> S (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 712 712 S -> SSQQAS (in Ref. 1; AAG43286). FT {ECO:0000305}. FT CONFLICT 820 820 S -> L (in Ref. 1; AAG43286). FT {ECO:0000305}. SQ SEQUENCE 853 AA; 94056 MW; 3C58CA243D24622E CRC64; MATAEVGGGG GEGDAAAAAV ARAGGGGGGG GGGGEDALFT ELWSACAGPL VTVPRVGEKV FYFPQGHIEQ VEASTNQVGE QRMQLYNLPW KILCEVMNVE LKAEPDTDEV YAQLTLLPEL KQQEDNGSTE EEVPSAPAAG HVRPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGEN GELRVGVRRA MRQQTNVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV PYDRYMESLK RNYSIGMRFK MRFEGEEAPE QRFTGTIVGM GDSDPAGWPE SKWRSLKVRW DEASSIPRPE RVSPWQIEPA VSPPPVNPLP VPRTKRLRPN ATALPADSSA IAKEAATKVV VESEPNGTQR TFQTQENATP KSGFGNSSEL ESAQKSIMRP SGFDREKNNT PIQWKLGSDG WMQMSKPESY SEMLSGFQPP KDVQTPQGFC SLPEQITAGH SNFWHTVNAQ YQDQQSNHNM FPSSWSFMPP NTRLGLNKQN YSMIQEAGVL SQRPGNTKFG NGVYAALPGR GTEQYSGGWF GHMMPNSHMD DTQPRLIKPK PLVVAHGDVQ KAKGASCKLF GIHLDSPAKS EPLKSPSSVV YDGTPQTPGA TEWRRPDVTE VEKCSDPSKA MKPLDTPQPD SVPEKPSSQQ ASRNMSCKSQ GVSTRSCKKV HKQGIALGRS VDLTKFNGYE ELIAELDDMF DFNGELKGPK KEWMVVYTDN EGDMMLVGDD PWIEFCDMVH KIFIYTREEV QRMNPGTLNS RSEDSHANSM ERGSVGREMR GCLSTSSLNS ENC // ID A2ZM93_ORYSI Unreviewed; 354 AA. AC A2ZM93; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 60. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY83727.1}; GN ORFNames=OsI_38946 {ECO:0000313|EMBL:EAY83727.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY83727.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY83727.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000137; EAY83727.1; -; Genomic_DNA. DR ProteinModelPortal; A2ZM93; -. DR EnsemblPlants; BGIOSGA037707-TA; BGIOSGA037707-PA; BGIOSGA037707. DR Gramene; BGIOSGA037707-TA; BGIOSGA037707-PA; BGIOSGA037707. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000244154; -. DR OMA; NFKGQIT; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000007015; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40499 MW; FE89ACCC695B0394 CRC64; MGEKGCESCR KWQEHYYREH MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL KSPSGETWRV GVAKVADELI LKSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTGKKNSYMC KNFNSIGGQV AGQYLSSDSE DTSTPSVLIG SPHKASTSKK LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL QPGNPVFVVV LQTAHVRRRN ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN TTRGFNCHRW IKFIRENRLR EGNVCIFELM KGARRPTMTV HVIGKADNRF VLLG // ID A2ZM95_ORYSI Unreviewed; 366 AA. AC A2ZM95; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 07-JUN-2017, entry version 58. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EAY83729.1}; GN ORFNames=OsI_38948 {ECO:0000313|EMBL:EAY83729.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY83729.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY83729.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000137; EAY83729.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA035909-TA; BGIOSGA035909-PA; BGIOSGA035909. DR Gramene; BGIOSGA035909-TA; BGIOSGA035909-PA; BGIOSGA035909. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000244154; -. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000007015; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41904 MW; 867B280C1CB07DE9 CRC64; MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL KAPSGETWRV SVEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT KTNPNKDDPF STGKEPEDPN SSRSHVKHEM IEEEKSDDDD EHADYEHADY YYSRFANYLT GEEREEIFSL VSLQPGNPVF VTVLQAPQIH RKGLLIVPSG FAADHLDSRS QEILLMRPNK KEKWYVKYYH ASTTRGFNCQ RWIKFIRENR LREGYICIFE LMKGARRVTM TVHVIGKVDD RFVLLG // ID A2ZMP7_ORYSI Unreviewed; 899 AA. AC A2ZMP7; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 77. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_39101 {ECO:0000313|EMBL:EAY83881.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY83881.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EAY83881.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000137; EAY83881.1; -; Genomic_DNA. DR ProteinModelPortal; A2ZMP7; -. DR STRING; 39946.BGIOSGA035840-PA; -. DR EnsemblPlants; BGIOSGA035840-TA; BGIOSGA035840-PA; BGIOSGA035840. DR Gramene; BGIOSGA035840-TA; BGIOSGA035840-PA; BGIOSGA035840. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; GSKQPTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007015; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99851 MW; 429FB93DB9FE9892 CRC64; MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRYG DPSKQHPATL QYQQTHNLNS GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE LQQQQRQHVL QEQSSQEMQQ QLPSSDHRVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG NSDPPLHLHN NFHNFSNQEP SNLLSLPRSS QLMASDGWPS KRLALESAVH PEAPSMHPKI EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASVAPLDY // ID Y2042_ORYSJ Reviewed; 110 AA. AC A3A463; Q6H744; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 15-FEB-2017, entry version 50. DE RecName: Full=B3 domain-containing protein LOC_Os02g10420; GN OrderedLocusNames=LOC_Os02g10420; GN ORFNames=OJ1524_D08.32, OsJ_05761, P0026H03.7; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAD25288.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAD25455.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004191; BAD25288.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP004812; BAD25455.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014958; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000139; EAZ22102.1; -; Genomic_DNA. DR RefSeq; XP_015624348.1; XM_015768862.1. DR PaxDb; A3A463; -. DR GeneID; 107276623; -. DR KEGG; osa:107276623; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000059680; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 110 B3 domain-containing protein FT LOC_Os02g10420. FT /FTId=PRO_0000376945. FT DNA_BIND 1 104 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12222 MW; 9172DD66DF9322F1 CRC64; MSAMLNENVP VEFQEAHGYA AREKVVLRMR GRSWTVRLKH TKGRRPRRER AVLRYGWHRF CADNGLAVGD TCFFRALRSA GSGAGDVDDG DGDHVLSVTV HKADGGDPLE // ID ARFP_ORYSJ Reviewed; 1055 AA. AC A3B9A0; A0A0N7KLP8; Q0DDV5; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 64. DE RecName: Full=Auxin response factor 16; GN Name=ARF16; OrderedLocusNames=Os06g0196700, LOC_Os06g09660; GN ORFNames=OsJ_019622; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- INDUCTION: By auxin under dark condition. CC {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF18968.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP008212; BAF18968.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014962; BAS96617.1; -; Genomic_DNA. DR EMBL; CM000143; EAZ36139.1; -; Genomic_DNA. DR RefSeq; XP_015643020.1; XM_015787534.1. DR UniGene; Os.22917; -. DR ProteinModelPortal; A3B9A0; -. DR SMR; A3B9A0; -. DR STRING; 39947.LOC_Os06g09660.1; -. DR PaxDb; A3B9A0; -. DR GeneID; 9270361; -. DR KEGG; osa:9270361; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; A3B9A0; -. DR Proteomes; UP000059680; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 1055 Auxin response factor 16. FT /FTId=PRO_0000299274. FT DOMAIN 940 1024 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 127 229 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 489 714 Gln-rich. SQ SEQUENCE 1055 AA; 116861 MW; A0D86A705B2282D6 CRC64; MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG SDSIGQLKQS PSQQAPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPST SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG // ID ARFT_ORYSJ Reviewed; 728 AA. AC A3BH85; Q8H508; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Putative auxin response factor 20; GN Name=ARF20; OrderedLocusNames=Os07g0183100, LOC_Os07g08520; GN ORFNames=OJ1046_F10.103, OJ1506_G02.20, OsJ_022407; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [4] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAC24869.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAD30342.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003835; BAD30342.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP003861; BAC24869.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014963; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000144; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR ProteinModelPortal; A3BH85; -. DR SMR; A3BH85; -. DR PaxDb; A3BH85; -. DR HOGENOM; HOG000034040; -. DR InParanoid; A3BH85; -. DR OrthoDB; EOG093603HK; -. DR Proteomes; UP000059680; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 728 Putative auxin response factor 20. FT /FTId=PRO_0000299279. FT DNA_BIND 119 233 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 728 AA; 79662 MW; 227F7A8B9FF6E16A CRC64; MAQPPDAAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKKRCR YMLGDLGVND NDGWRGFVKA KRLATRDTVV FMRRGGGDGD GDGELLVGVR RAPRARGGHH PRPGVEDNKV VSEVWLAMQG VTPFEVTYYP REGTFEFVVS RDEYIGFSFS PFYPFVPGTT VHLRMNPLQI AQSISGTVRT FDHLRPWRML EVDWDQAASP ISYRIHRQVN SWQVLRQPQP AATTSAVRIR DAIVATPQVQ IMALPRPPPP TTTTGMVPSD DSYAMISLFP GDCYVTHRPL PAARDPVGGQ REFCFFDKKL SPSDAAANGG GSGALFVIPK PSAAEHVLPR IPDLRVTNLQ GGRWEFGHTW SDADTDRRSS SHTLAAGWSA FVKAKRLCVG DTVIFMRRRP GGEPLVGVRR KPHGGMPVGI PDKHVADAWL DASSAQPFRV TYCPWQGTAE FVVRREEVEG SPPLAPGTRV RLLMNPDDAR RRSQPPVYGT VRDVHCRSEW RMLEVDWDRD SPLAPTMNRR VNSWQVQPVQ LALPPQGSDE EAAAATTSTA HAGDATTSAP SLALQLQTMA SSSSSSAPII PSRGSAFRIV NPRDGSQG // ID Y7838_ORYSJ Reviewed; 524 AA. AC A3BH91; A0A0N7KN14; Q8H501; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 1. DT 15-MAR-2017, entry version 52. DE RecName: Full=B3 domain-containing protein Os07g0183700; GN OrderedLocusNames=Os07g0183700, Os07g0183866, Os07g0183932, GN LOC_Os07g08600; ORFNames=OJ1046_F10.111, OJ1506_G02.28, OsJ_23349; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAC24876.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAD30348.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003835; BAD30348.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP003861; BAC24876.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014963; BAT00346.1; -; Genomic_DNA. DR EMBL; CM000144; EAZ38930.1; -; Genomic_DNA. DR SMR; A3BH91; -. DR PaxDb; A3BH91; -. DR EnsemblPlants; OS07T0183700-00; OS07T0183700-00; OS07G0183700. DR Gramene; OS07T0183700-00; OS07T0183700-00; OS07G0183700. DR HOGENOM; HOG000242170; -. DR OMA; MEFSNAN; -. DR OrthoDB; EOG093609VU; -. DR Proteomes; UP000059680; Chromosome 7. DR Genevisible; A3BH91; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0009725; P:response to hormone; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 524 B3 domain-containing protein FT Os07g0183700. FT /FTId=PRO_0000376979. FT DNA_BIND 336 434 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 57 111 Pro-rich. SQ SEQUENCE 524 AA; 56140 MW; D6A43E9F5E1FE027 CRC64; MPLPSCRRRE QRPRQSCFQN PECHLRLRAR QQRPQESAVQ STLSSSIYFS DHFVLTPPPF QITPTSIQNS TWLPIPTSPA VAAPPLPRCL GGVDGEGAPC APPPSPIPAG PASSTVSAAS SAPATRDYLG GITGHRLGQE DDSGGHEYTS VSGIHVPSSS GVAFVSFGQC PQEVISTDLC LGLGPIAATA PLQPPPPPAA AAAAGSPSAT TPEPGHGEAT PTTSSSAQFQ TQAQQVTRDM WMACAAPKSG RLPTVGSLVY YFPDGHAEQC LSRPQEPLPG RIFLCKVTDV RLGAAATNEA LATISLVPIA ADDHAFQLQA PADPDPAPAQ SQSLVSFVKP LTYTDVTKNR FMVPKDDAAA GVLPHIQLND DVPLRIKDLS GKEWAFNYTW KAHTRMFRNG WMEFSNANGL VTGDNAVFMR RGNGEMFMAV RRTRNRPAPF SVEEVIEAVW RAARREPFEV SYCLRQDGDE FVVPRDIVDD GLRARFAPGM AVNFVWAVED GKLPTIGPQG EVISIENYAT SIGA // ID LFL1_ORYSJ Reviewed; 402 AA. AC A4LBC0; Q5N8D2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-2007, sequence version 1. DT 15-FEB-2017, entry version 60. DE RecName: Full=B3 domain-containing protein LFL1; DE AltName: Full=LEC2 and FUSCA3-like protein 1; DE Short=OsLFL1; GN Name=LFL1; OrderedLocusNames=Os01g0713600, LOC_Os01g51610; GN ORFNames=B1142C05.32; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND TISSUE RP SPECIFICITY. RC STRAIN=cv. Zhonghua 11; RX PubMed=17913295; DOI=10.1016/j.jplph.2007.07.010; RA Peng L.-T., Shi Z.-Y., Li L., Shen G.-Z., Zhang J.-L.; RT "Overexpression of transcription factor OsLFL1 delays flowering time RT in Oryza sativa."; RL J. Plant Physiol. 165:876-885(2008). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 80-402. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [7] RP FUNCTION. RX PubMed=17592727; DOI=10.1016/j.bbrc.2007.06.041; RA Peng L.-T., Shi Z.-Y., Li L., Shen G.-Z., Zhang J.-L.; RT "Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its RT promoter."; RL Biochem. Biophys. Res. Commun. 360:251-256(2007). CC -!- FUNCTION: Transcription repressor involved in flowering time CC regulation. Represses the flowering activator EHD1 by binding CC specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. CC {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:17913295}. CC -!- TISSUE SPECIFICITY: Expressed in anthers, pollen grains and young CC developing embryos. {ECO:0000269|PubMed:17913295}. CC -!- MISCELLANEOUS: Plants overexpressing LFL1 show a late-flowering CC phenotype. CC -!- SEQUENCE CAUTION: CC Sequence=BAD82277.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAF05967.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAG98960.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EF521182; ABO64645.1; -; mRNA. DR EMBL; AP003410; BAD82277.1; ALT_INIT; Genomic_DNA. DR EMBL; AP008207; BAF05967.1; ALT_INIT; Genomic_DNA. DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AK109920; BAG98960.1; ALT_INIT; mRNA. DR RefSeq; XP_015635173.1; XM_015779687.1. DR UniGene; Os.8988; -. DR ProteinModelPortal; A4LBC0; -. DR STRING; 39947.LOC_Os01g51610.1; -. DR PaxDb; A4LBC0; -. DR GeneID; 4325939; -. DR KEGG; osa:4325939; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; A4LBC0; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; A4LBC0; OS. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:UniProtKB. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB. DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW. DR GO; GO:0048573; P:photoperiodism, flowering; IMP:UniProtKB. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:UniProtKB. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Flowering; Nucleus; KW Reference proteome; Repressor; Transcription; KW Transcription regulation. FT CHAIN 1 402 B3 domain-containing protein LFL1. FT /FTId=PRO_0000378040. FT DNA_BIND 181 284 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 89 99 Poly-Pro. FT COMPBIAS 123 132 Poly-Ser. SQ SEQUENCE 402 AA; 43409 MW; 0C26DF2DBCE7F67E CRC64; MRGEERWQEQ PALASHPSRA TLRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS ASPPVLPPIK DQGARPPTLA ASAAAASSPP PPPPPPIPPL PPSTSTSAAR PTDMAGVTSK RRSSSASTSS SSGDGAAVSD RPRGVTRKRR SGGRCPRPAA SLRPAAPRPS SHHTAGLRVI LQKELRYSDV SQLGRIVLPK KEAEAYLPIL TSKDGKKSLC MHDLQNAQLW TFKYRYWPNN KSRMYVLENT GDYVRTHDLQ LGDSIVIYKD DENNRFVIGA KKAGDQQAAT VPQVDEHIST LFPIFPIAQV DDYLSPMAPQ VDISAFVPHA DENHEIFDGI LNSLPEIPVA NVRYSDFFDP FDDGMDMANT LNANANQSAS LHVTDDKSGH SLIPNPKSGP HM // ID A8HR53_CHLRE Unreviewed; 235 AA. AC A8HR53; DT 04-DEC-2007, integrated into UniProtKB/TrEMBL. DT 04-DEC-2007, sequence version 1. DT 07-JUN-2017, entry version 44. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDP08907.1}; GN ORFNames=CHLREDRAFT_168369 {ECO:0000313|EMBL:EDP08907.1}; OS Chlamydomonas reinhardtii (Chlamydomonas smithii). OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas. OX NCBI_TaxID=3055 {ECO:0000313|Proteomes:UP000006906}; RN [1] {ECO:0000313|EMBL:EDP08907.1, ECO:0000313|Proteomes:UP000006906} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=CC-503 {ECO:0000313|Proteomes:UP000006906}; RX PubMed=17932292; DOI=10.1126/science.1143609; RA Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., RA Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., RA Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., RA Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P., RA Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., RA Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., RA Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., RA Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., RA Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., RA Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., RA Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., RA Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., RA Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., RA Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., RA Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., RA Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., RA Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., RA Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., RA Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., RA Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., RA Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., RA Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., RA Rokhsar D.S., Grossman A.R.; RT "The Chlamydomonas genome reveals the evolution of key animal and RT plant functions."; RL Science 318:245-250(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS496109; EDP08907.1; -; Genomic_DNA. DR RefSeq; XP_001693653.1; XM_001693601.1. DR ProteinModelPortal; A8HR53; -. DR STRING; 3055.EDP08907; -. DR PaxDb; A8HR53; -. DR EnsemblPlants; EDP08907; EDP08907; CHLREDRAFT_168369. DR GeneID; 5719015; -. DR Gramene; EDP08907; EDP08907; CHLREDRAFT_168369. DR KEGG; cre:CHLREDRAFT_168369; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; A8HR53; -. DR Proteomes; UP000006906; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006906}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006906}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 42 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 235 AA; 24162 MW; A79AFF5982141144 CRC64; MRTMRTRLRA ALTAAPAASS DPEAVAAALA GRMAALGASV IFEKSLTASD VSGGGRVVVP KSIAEQYFPR LEAPSGVTIS AADLEGRAYT FKWRFWVNNS SRMYLLEGAG ELHRNYGLEV GDVMVFAQKQ DGSLVVAGRC ANKADMVKKQ PVKRPNTAAA ATAAAVVLPA NGTSGGHAST GAGTGGSSPG VGVGVALARN NRWTATLDVA GELYQAYFDC RDDAVEALTA AGASP // ID A9RDF5_PHYPA Unreviewed; 89 AA. AC A9RDF5; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 41. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ83000.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_39100 {ECO:0000313|EMBL:EDQ83000.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ83000.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544892; EDQ83000.1; -; Genomic_DNA. DR RefSeq; XP_001752267.1; XM_001752215.1. DR GeneID; 5915533; -. DR KEGG; ppp:PHYPADRAFT_39100; -. DR InParanoid; A9RDF5; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ83000.1}. FT NON_TER 89 89 {ECO:0000313|EMBL:EDQ83000.1}. SQ SEQUENCE 89 AA; 10495 MW; 2DCBBBBF8204C174 CRC64; LQPSDVNNLG RIVISKREAE THLPNLAVKE GIFITMEDFD TRERWTFRYR FWPNSRSRMY LLENTGDFVR AHHLTTGDVL VLWRNCEGG // ID A9RER9_PHYPA Unreviewed; 120 AA. AC A9RER9; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ82460.1}; GN ORFNames=PHYPADRAFT_112999 {ECO:0000313|EMBL:EDQ82460.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ82460.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544894; EDQ82460.1; -; Genomic_DNA. DR RefSeq; XP_001752589.1; XM_001752537.1. DR UniGene; Ppa.11980; -. DR GeneID; 5915816; -. DR KEGG; ppp:PHYPADRAFT_112999; -. DR InParanoid; A9RER9; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 16 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 120 AA; 13622 MW; BBE8EA1160498BE3 CRC64; MQGKQGLSTD NLVFLLAKQL SPSGVSSLGR IVLPKKEAEA HLPHLVASEG VFLPMTDFDS GQAWLFRYRF WSNNKSRMYL LENTRDFVKA HNLQERDMLV LYRDAEGSYV RVIGTLSTIC // ID A9RFI5_PHYPA Unreviewed; 758 AA. AC A9RFI5; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_50215 {ECO:0000313|EMBL:EDQ82402.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ82402.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544895; EDQ82402.1; -; Genomic_DNA. DR RefSeq; XP_001752898.1; XM_001752846.1. DR GeneID; 5916127; -. DR KEGG; ppp:PHYPADRAFT_50215; -. DR InParanoid; A9RFI5; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 110 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 670 754 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 110 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ82402.1}. FT NON_TER 758 758 {ECO:0000313|EMBL:EDQ82402.1}. SQ SEQUENCE 758 AA; 84499 MW; A6B3BA55AB663C18 CRC64; RRSLNSELWH ACAGSLVSLP PVGSRVVYFP QGHIEQVAAS TQKEADVPIP NYPSLPSRLF CLLDNVSLHA DHETDEVYAQ MTLLPIQNSE KEALLAPDSV IPNKQPSEYF CKTLTASDTS THGGFSIPRR AAEKVFPPLD FTKSPPAQEL VARDLHDQDW HFRHIYRGQP RRHLLTTGWS VFVSIKRLQA GDSVLFIRDD KDHLLLGIRR ANRQQSVMPS SVLSSDSMHF GVLAAASHAA ATSSRFKIFY NPRQSPSEFV IPLAKYQKAL YNTQVTLGMR FRMAFETEES NVRKYMGTIT CIGDLDPARW PKSDWRSLKV GWDESIAGDR QLRVSLWEIE PTPTPFLLCP PPVALRSKRP QEDALEMLMK KSHMWPHGSD PSVSLKVGGL RLDPLWMRLP QPRLGPMVSS PQSGYYRALA AAALQEIRSV DPPTQLLPQS ASSSQLFFGQ PQSQSQPQQL MQHINDIPGP LLQLTTSQTQ TVDLANPVGP SSSYRESDMH MTSPTTMSNS LALQGMMRRA STSATLSFSE GNQITSLMRK SHNGLQPYGT VQGASTSWFS NQSDSQALIS SQQSRVEASS GGVPESYALP QNNESSLHQG LGHQLPFGFR SNDQDSDQLQ ADRSHLLFGM SIDQPLGGSS VVSPQSYRKS KDDTGNNMLV VYGITFFIYR TCFQVHKLGS VGRSLDVRNF SNYTELRQEL ARRFQLDCLM EDPSSSGWQI VFVDNEDDTL LLGDDPWEEF AKFVKTIKIL SPSEVAQM // ID A9RFW5_PHYPA Unreviewed; 741 AA. AC A9RFW5; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDQ82014.1}; GN ORFNames=PHYPADRAFT_158812 {ECO:0000313|EMBL:EDQ82014.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|EMBL:EDQ82014.1, ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ82014.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544896; EDQ82014.1; -; Genomic_DNA. DR RefSeq; XP_001752973.1; XM_001752921.1. DR UniGene; Ppa.3465; -. DR STRING; 3218.PP1S7_115V6.1; -. DR GeneID; 5916283; -. DR KEGG; ppp:PHYPADRAFT_158812; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; A9RFW5; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 450 551 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 450 551 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 741 AA; 81944 MW; 9726FB1AD7FF30BD CRC64; MVEISSTCSP LESPGHDNAK YAECLTCGVL LSSVEAYQQD RLGLLKRSEP LREPTGLRSW IDIPLGLEDY RHCASTFACN KDDQNFDMRG LSRIGFPNPT INLEIQGIGD FYSQARSPVA SYSSGTSNDC NSAGTSTVDS TEDASLSSYL MDGNVRAMLK KVTVNEGVLN QTIQSLGGGE KGLKELMAYI MAWVKEQNGE NCDKLFLSQN LEKLNPPQMN PTFGFAPSLA NNIPTCNLTL GTAACDQRSD NLRRTFDTVQ SSDDTQDLNQ VIQCSKSRRL MVEGEVDSSY RADAYPRQGT FLNARGSVSE DFHSTKLESN MTNPSPIDAV VLQGMSSELG TLTQQAPCSQ FGLSFNPGQN ELNRTLAAST RAARRNRLSR QRQSVQQSHR RSPTSGTTVT SGGCGLWSAS PPALDFMNTR WNHPGTQMPL GASVKSEKKG NTTDMLTFLL QKELRPSDVG NLGRIILPKK EAEVHLPILA LREGVSLLME DFDSGYCWNI RYRFWPNNKS RMYLLENTGE FVKSHHLKEG DLLILYRNEQ GNYVLRGKKK VPSETRVAYG SQHRTAHSLA CRFSEGIPNK IEESFKDRDF GGGLTETASG KLKIEVKAEP LVVQPSTDGD KFEDVMSNIG SSFATEGPLQ PLERFPSLNL DFPLDEIMAG IPKEEDNDLT IEPHMDSKGW MSQPDFRLSE NQINVEPAGG CNYKLFAMTS NIWEFDAVDV VFELSSMAAM SCRKISQLPM S // ID A9RG97_PHYPA Unreviewed; 217 AA. AC A9RG97; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDQ82080.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_113682 {ECO:0000313|EMBL:EDQ82080.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|EMBL:EDQ82080.1, ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ82080.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544896; EDQ82080.1; -; Genomic_DNA. DR RefSeq; XP_001753039.1; XM_001752987.1. DR GeneID; 5916273; -. DR KEGG; ppp:PHYPADRAFT_113682; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; A9RG97; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 128 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 217 217 {ECO:0000313|EMBL:EDQ82080.1}. SQ SEQUENCE 217 AA; 24831 MW; E3859718E9031468 CRC64; MVASSLGLSY EDARKQRVEE NNRRMAELGL FDLSKSLKEV KNVASARKPL AKRKVSSQEL TTEARRSGRN AGKMVSYREQ LDMMPGMRMR CGTRDRQSLA RRYLSDAARM AAVDAAEEVY KDIKNPAFVK PMLHSHTASG FWLGLPSNFC KQYLPHRDER IVLEDEQNME WECLYLAHKV GLSGGWRGFS LDHELVDGDS CIFELVGSTR FKVYIFR // ID A9RKP2_PHYPA Unreviewed; 398 AA. AC A9RKP2; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHYPADRAFT_203442 {ECO:0000313|EMBL:EDQ80683.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ80683.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544903; EDQ80683.1; -; Genomic_DNA. DR RefSeq; XP_001754713.1; XM_001754661.1. DR UniGene; Ppa.14554; -. DR ProteinModelPortal; A9RKP2; -. DR STRING; 3218.PP1S14_392V6.1; -. DR GeneID; 5917806; -. DR KEGG; ppp:PHYPADRAFT_203442; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 107 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 398 AA; 45295 MW; 1A3F5924208D1B38 CRC64; MDELDCELWH ACAGPLTQLP PVDSHVMYWP QGHIEQVCAA DVYQASKQFS NLPAHLLCKI SKIELQADPH TDEVFAQMDL TPQYETEFTK EMKDAPPPTM QKNVRSFCKT LTASDTSTHG GFSVPRRAAE DCLPLLDHSM NPPCQELVAK DLHGKEWNFR HIYRGHPRRH LLTTGWSVFV SQKRLVAGDT VIFLRGENGQ LRVGVRRASK QLPQTRSTHF SNANLHLGVL AAASHAATER LRFSVIYNPR TSPSEFVIPY HKYLKTKENN LTVGSRFKMK FESDESTERR YSGTIVEVSD ADPLKWPNSA WRSMKVEWDE SASERHERVS PWEIEPFVPI STLPTPSVGP RPKRRPPTFV TDSSPQGTSQ SVLDPQQSNK LARILHSHDP RNEVEYRR // ID A9RPW0_PHYPA Unreviewed; 83 AA. AC A9RPW0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ79060.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_39201 {ECO:0000313|EMBL:EDQ79060.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ79060.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544910; EDQ79060.1; -; Genomic_DNA. DR RefSeq; XP_001756194.1; XM_001756142.1. DR UniGene; Ppa.1600; -. DR GeneID; 5919377; -. DR KEGG; ppp:PHYPADRAFT_39201; -. DR InParanoid; A9RPW0; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ79060.1}. FT NON_TER 83 83 {ECO:0000313|EMBL:EDQ79060.1}. SQ SEQUENCE 83 AA; 9797 MW; D1380E46745B1F8E CRC64; LRASDVSSLG RIILPKKDAE RHLPFLAVRE GITMSLMDYH TGQYWTARYR YWPNNKSRMY LLEKIGSFVS FHKLEEGDLL LCY // ID A9RTB0_PHYPA Unreviewed; 1059 AA. AC A9RTB0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ77883.1}; GN ORFNames=PHYPADRAFT_70276 {ECO:0000313|EMBL:EDQ77883.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ77883.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544916; EDQ77883.1; -; Genomic_DNA. DR RefSeq; XP_001757398.1; XM_001757346.1. DR ProteinModelPortal; A9RTB0; -. DR GeneID; 5920620; -. DR KEGG; ppp:PHYPADRAFT_70276; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 107 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1059 AA; 117521 MW; CBEEBC5C2E46A3E4 CRC64; MEVAVDVDAT EYPGYISCMF CTARCFKLHA SHGAVKASSK VCAGSGSSRS RESLQAGAQK NSSNRKHRAP FFVKTVKITT VRKKNCELKE GQAVLLTDMP FKCAQHLPAF FFKDYGDMFQ KFVLLQGPSG QVWPVNLCVS CGSTTGRPTV RFSRGWKEFA HDHHLELGDK LIFTLASFSR FSVQVFDPLG KKKQTSSTAV SGWSFRREDL MDDEISRKKK SIFVNWQNKI VRESTPVLGG NDVSKKSAVA GNGHASRMAM LCRHLKQENK KMEKRNALIA KFRTRSQEKS IPLSLLGQKV SLGSGSASSS DSDGSFYLND EQDYDTKLLD WEPLEIASPS RIWPLAFNSN DSSTAIVTAQ QQNSVVDSRT QPVNLSRTSS PSSPTSSKFH GGLENSEQGQ CRSNIVDRLE DEKDLLQACW KRNLKSTTST AWPSGEMRHD VQPSPRSHVF NVRPISALEG PHEIDAVCTP LSPTLSLSHY LESSSPEAVQ SRHGPESRQL QQRFSFSNQD LAVRNHSDYR GHRTRDCSDN SGSVSEDLTL QSIHAQSAKI PIGGISNSSN RSSVTIEKCT HWSRIPLENR QVRLFDSAHG IKSSRVKETN VPSSKNLSSD LELRTQSSSK MPLNSLKPTS SRNDLSLAYF LNQPRPNARR QSHGEERIAA DQFTGGTCTD AKGSISQREV DHVVTTMGPS LQKTQKIVSF TDALPSGAVS LQNPLDVRSS DKSNVCRNET TLRVEKAGQM QRPAELPETK TARCCANENF NICTTSSESK ENIPTEIPAS IGPLVVFNSS ARVENFPNEV DRFQQKELGL TSKRGGKENI KSSTKRNRTE NRVAPLVLTD HNRNPHHQKM TTITNVCANS PTKENKPALP HRKDVGITEY LEQKRIARKT RPRLKKKPTP GVSNVAVSQI KAVFTTEDIK PFVNASSNFQ LDSSSRIRSQ INASNSRKTT PMEEKVQKLG GTFGGMERAQ TSHMKSSIGN RCDLVELDSI ASEDNEDSAG GDIFEVEESW DTWREIIRQR DAASSHHLRT PVCVQPLLKG EAQTKMRTMD IDSAFDKQQ // ID A9RVJ4_PHYPA Unreviewed; 703 AA. AC A9RVJ4; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ77069.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_120152 {ECO:0000313|EMBL:EDQ77069.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ77069.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544920; EDQ77069.1; -; Genomic_DNA. DR RefSeq; XP_001758247.1; XM_001758195.1. DR UniGene; Ppa.2875; -. DR PRIDE; A9RVJ4; -. DR GeneID; 5921353; -. DR KEGG; ppp:PHYPADRAFT_120152; -. DR InParanoid; A9RVJ4; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 287 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 535 585 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 287 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 703 703 {ECO:0000313|EMBL:EDQ77069.1}. SQ SEQUENCE 703 AA; 76698 MW; FC0927B3303C7FF0 CRC64; MDNKIECRKV CWNSKCGTSS STTWRPGWIA RNGRTAELCD YCGLAYQQSS FCETYHSDDA GWRTCNFCKK RVHCGCVASA NGIVLLDKGG VECIRCATAH DSAGSISLVR AGYNDAYRVC AKPVGKHGQQ LLSPAVPLES GKVVDPAVRG WCEGYGAALA VCQVDGGAWP PSSAARTSLS PPTGLARPWS TPETDISVKS KDGVDSASRE QITLEVMDCG GEGTESDKNV SLDRTKAGGA GSLRVARPPG EGRGRNQLLP RYWPRITDQE LKQINSGDTQ TTITPLFEKM LSASDAGRIG RLVLPKACAE AYFPPIHQPE GLPLRIQDVT GRDWVFQFRF WPNNNSRMYV LEGVTPCIQS MKLHAGDTVT FSRLEADGKL VMGYRKAPTS LSSQVCILNT HAMFHLFQDA GATRVGPNAS NGLSNPSSAV IQTADGWASN VGAPKSKESG VSIGQLWSSQ MDRKRGRPLG SKSKRLRLDS IDSMLLKSNW EEAQELLRPA PSASSTVITI DGHEFEEYSE PPVLAKRTFI TKAPSGAQEQ WAQCDDCGTW RRVPVDAFVP ARWSCSQNSW DQTRAQCSAA QEVSSDKLEV LLEGGKQEYA PKVTPTSREE NVSTTSAAAG LDTLAQAAST SLSPVRTTKH PRHRPGCTCI VCIQPPSGKG PKHKASCICN VCVTVKRRFR TLMQRRKKRQ CEREFEAFRN KRE // ID A9RWE7_PHYPA Unreviewed; 737 AA. AC A9RWE7; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 50. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ76767.1}; GN ORFNames=PHYPADRAFT_71426 {ECO:0000313|EMBL:EDQ76767.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ76767.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544921; EDQ76767.1; -; Genomic_DNA. DR RefSeq; XP_001758365.1; XM_001758313.1. DR ProteinModelPortal; A9RWE7; -. DR EnsemblPlants; PP1S32_259V6.1; PP1S32_259V6.1; PP1S32_259V6. DR GeneID; 5921653; -. DR Gramene; PP1S32_259V6.1; PP1S32_259V6.1; PP1S32_259V6. DR KEGG; ppp:PHYPADRAFT_71426; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; A9RWE7; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 64 154 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 584 676 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 154 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 584 676 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 737 AA; 83330 MW; 72F18D9115DD2255 CRC64; MVPGGAEAGS PHERLVAHSD QVGLSVNSLE DSIGIACQPC VRTCMRVHGN YRSRTPLLHP CFYISVDEHS VDGGQDCWMT VPEAFIRRYL PNVDRQRMIL ENADGWKWPV MYSVDGFYYG WREFSNDNSL ILGDMLFFSL VEIKRFTVHV FSKSSGCEKS AGIVKAPSNK VLRPRRGAVT EQQIHSMPAL EGLSRFRENE SEERLEEPRN LSFGSCYEQR EGRVGVPPEE LRDTVGVHLR RPHHSTDDNH VVLQNQLRET QISKGTSLDT HERSKSMPAG NIHPPPSWTG MVDSETCSTL KMKQGNLRGQ QSPKRRQTQT RALARAYVEK AKLRKTNLTD LPVHGIVSEG SQNPLCKESI ITKSPRAQPL QSSDYIEERS CFDRDGGAIY GSDEGRSLSL LQRGAYCRDR HNNVSEEEEE DTDVSLQNLS HTATGKTIIA DEIQNYPGSN DVDLNGFFAE DIPTLTDHLN QEKQNRLENH LQNAPTRKRG RPRKYPIGEA QQPRTPLNVN SHAQRDKVQP LAKRKRGRPF KHQILPQDFT SLNGPSRQMR DIFISRRQPV TQAEKDDALT AAHSFASGIE ATNIVIVMRQ SFVYRNFVMG MPKKFGQCYM PAGNKETRIC DTEWKVWFCS WNAACGYLSG RGWRNFALDH CLEEDDTVVF EVIAESKTMV TLMAHIFRVV AIPDGVTGWQ SHICPPDCFV ETHSGLLIQP IPRMKLTTQQ ERDLKLEGSA MTDSLRS // ID A9RXC6_PHYPA Unreviewed; 555 AA. AC A9RXC6; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ76245.1}; GN ORFNames=PHYPADRAFT_161559 {ECO:0000313|EMBL:EDQ76245.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ76245.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544923; EDQ76245.1; -; Genomic_DNA. DR RefSeq; XP_001758739.1; XM_001758687.1. DR UniGene; Ppa.8644; -. DR ProteinModelPortal; A9RXC6; -. DR PRIDE; A9RXC6; -. DR GeneID; 5922006; -. DR KEGG; ppp:PHYPADRAFT_161559; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd00118; LysM; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR018392; LysM_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF01476; LysM; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00257; LysM; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54106; SSF54106; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51782; LYSM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 108 152 LysM. {ECO:0000259|PROSITE:PS51782}. FT DOMAIN 370 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 370 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 61461 MW; 4378E0C6F94842FE CRC64; MATSGNAPAA GPKPEKPAED KNRSKDELIA KAAGAVVAGG IVWSLFKSVT RKEKSQQENE GSLTKEVGHK TKDVAQSAEH KGISAMHTSE AAGGALSHFG NKKLDNCKTI QVHKGDTLWG ISRKYNVTVE ALMATNGIKD GDNIAAGESI MWPGRWVPEL SFTVEPVAIY FCDTWALHQK RINCSPSRNH TDKRQKSLKA TISVLSTQNA LYFHVNCRIG KITMFISSRP MLGCSSVRVE VAMADEDETE LTYEEKRKQR VEENEKKMGE LGLLKLAKSV SEGNGGALLK KSTKRKMMSS LEELRLEARR SSRVAAKPAV TYNDAPVLSG LREKVETRHG LPKQYLSDKP RMAAIDAAEA VFKDLRNPAF IKSLLHSHTS GGFWMGLQSA FCKEHLPVDD ERIMLEANDL EWECIYLAGK GGLSGGWRGF SIDNQLADGD CCIFELVNPR RFVVHIFRVS RDESLKPVKA GREKRRISMQ LPRLTLIVLD NSELILHSGV FPFCNLYANL EPCLATSIGR VEFEWLQWTI ECRIRNISKA DLSSLGGCKT RACPA // ID A9RXK3_PHYPA Unreviewed; 958 AA. AC A9RXK3; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ76409.1}; GN ORFNames=PHYPADRAFT_161610 {ECO:0000313|EMBL:EDQ76409.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ76409.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544923; EDQ76409.1; -; Genomic_DNA. DR RefSeq; XP_001758903.1; XM_001758851.1. DR UniGene; Ppa.5718; -. DR ProteinModelPortal; A9RXK3; -. DR GeneID; 5922149; -. DR KEGG; ppp:PHYPADRAFT_161610; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; A9RXK3; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 38 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 672 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 608 672 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 958 AA; 105425 MW; 1A06414F1482AB72 CRC64; MGKGGGSGGD YEACTVCTRV CQTTHGKGLP HSVPRFLKTI PEYSTPSNKN CNLQIPAAYV REHMGMSIEE TYILEDVTGS EWVVISSSAT LKNGWKAFAV DYQLEKGDQI MFGLVAPKRF YVSVFDKSGM EKVSTRQHLN SMGSTGTAMD KESELAPQVS KPMSGGAEDP CTPMNLAHSK GATRRARSND TSQHNSQLLV SNDVGALPSR NASDQNGNQK GILCNGVSIN SHLPNEPVDR HVTEGIVMNE SSDESEDSVQ MLLAKAVLAK AKQRKLNKRK MSCHNTRQAK MALEAISPEC VFKNEMSQSF EDKIRAMKSK CRNAEIVSNS LARLSSDNVT SSLRDDFATS HDGIEADLAI REEPLEDGRV LMNGSSRHQV GVSKAGVDLR RDEPHNHHDR VNGLPDEVMK EIPLPGHKQN DVMTQMTTPR VATAQDPILN GVQGEEAERS DQFSPVFEPA LVKSEPGVSF VEDLGPAMVA AGAHVHENKI CANCGLPTDA ENLKSEFVTP EVSEIPKDNN LILDAVTSEE PESTHAKGPN SSAPIPFSGD DSTTEYQKRW AHEAAKSFSA NMKNPSAIIV MRSSFVKNTY ACFVTVKCAG LLPTKPAELS LVDTDGYVRK ANWRPGKRYM LGAGWKDFVE THNVQESDVC VLELIDRSQV NCKLLVHVFR AREMEREHEQ SIPAPGATPV IEASPRARTH AEGKRGRAAN GLLLPGLLPS TRKRRKSIAK SLNNEVVEIG LPVPSTSPDD EVAEPGLTFE RGKPTKQGSA TKRVRRHSMS THTQIKKVAK DETRSSPRGA VVEKQQDLLA TPSQKSHKHY TVKNLIDRRR GLQGVLFLVE LKETVILQGG SKKKPKMSAT QDGRGRWWMI VFSNFTARIA YNRLGVKNRD TWLLDKTFFQ LSELPPLASE IYYPPCTSRL VPVILEPSLD AKKRCVSQFS CLPESTHENM QQPPPLFS // ID A9RXP5_PHYPA Unreviewed; 426 AA. AC A9RXP5; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 51. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ76308.1}; GN ORFNames=PHYPADRAFT_71904 {ECO:0000313|EMBL:EDQ76308.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ76308.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544923; EDQ76308.1; -; Genomic_DNA. DR RefSeq; XP_001758802.1; XM_001758750.1. DR ProteinModelPortal; A9RXP5; -. DR STRING; 3218.PP1S34_303V6.1; -. DR EnsemblPlants; PP1S34_303V6.1; PP1S34_303V6.1; PP1S34_303V6. DR GeneID; 5922053; -. DR Gramene; PP1S34_303V6.1; PP1S34_303V6.1; PP1S34_303V6. DR KEGG; ppp:PHYPADRAFT_71904; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; A9RXP5; -. DR OMA; TEFVWEN; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 32 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 283 380 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 283 380 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 426 AA; 47469 MW; D42C55EE7D3F897A CRC64; MKTTACALCL MNCVRLHGDE CEDADGASAP LPSFIKTMTE LTITSVLQIP ASFVRCSDSR IGKVVTLEGP SKENWSVEVG PGTLQRSGLE FRDGWQKFVA DHNVQIGDHL FFTLKSYSRF QVMVYDESGS PKANATAARN SIAAYKDEPK SLSEAQVGTS VIYRSKGPVA RPKHKVRRKI RTKSATKPVV VVGRSSDLEL ENSDPLVKDI TNVTEIVSDS KPQHQSDTIE IPDSPGAAQP LLVPHVVRGG HVISERRAVT QPEKEKVIHA ARLLADTLTN PKIVVAMSKA YVYRGFWMVL NRPFSKAYMP QESREVTLCN KAGHEWPVKW LFKETNSSSG FSGGWRRFSL DHRLEESDVC VFEIVDETNF VILVHIFRAL GQPGEDNSDY RPSSSRDWGV DQRKRKTASN PCVDTNLNYK KPIGFF // ID A9S416_PHYPA Unreviewed; 454 AA. AC A9S416; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ74182.1}; GN ORFNames=PHYPADRAFT_74293 {ECO:0000313|EMBL:EDQ74182.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ74182.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544935; EDQ74182.1; -; Genomic_DNA. DR RefSeq; XP_001761115.1; XM_001761063.1. DR ProteinModelPortal; A9S416; -. DR EnsemblPlants; PP1S46_251V6.1; PP1S46_251V6.1; PP1S46_251V6. DR GeneID; 5924293; -. DR Gramene; PP1S46_251V6.1; PP1S46_251V6.1; PP1S46_251V6. DR KEGG; ppp:PHYPADRAFT_74293; -. DR InParanoid; A9S416; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 51 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 397 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 397 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 454 AA; 51030 MW; 3C8A7DFB82CC93B0 CRC64; MARMHGASTV GDVDVDAKED EEEAWKVHRG NVKREQLLQS LQGSIHFEKI LTKSNTDRPG KKSCLLGLPV WFVLEHGDKF QRDVVLRSGS SPKPWMPWDV RLSVHVRYST YPDVNFSYGW KGFSAACDLR VGDSLIFLLT EFSEFEVHVF RRTENPDVSS LLTGENQGDD SDLFREKVSK SHGSTSRYMP TESFVELVPH DSCGSIEKRG TIGGEGAVSA SPGGTSLKNS NCNMTTKGNE QSTAMRTLVG TLECQVQPTV HHKENAIHFP KTGRFGQHTS KSPEVAYFKK TITPSNVDRN NKKFCSLLMP KWFVLQHGDK FQRSVVLRSG SSAKPWQPWN VVVKMWRRPE CENFSPRVAF TAGWKDFATF CGLRIGDAVV FNLRKLSEFD VHVVRGVGTS MPSAFQGPRN WDVVPEPLQE IENILFTPPE LCMDLQKSPE HAGGDHQEHM ISFP // ID A9SBM0_PHYPA Unreviewed; 269 AA. AC A9SBM0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 57. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ71373.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_127150 {ECO:0000313|EMBL:EDQ71373.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ71373.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00585200}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544952; EDQ71373.1; -; Genomic_DNA. DR RefSeq; XP_001763731.1; XM_001763679.1. DR GeneID; 5926939; -. DR KEGG; ppp:PHYPADRAFT_127150; -. DR InParanoid; A9SBM0; -. DR KO; K09287; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585222}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585208}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}. FT DOMAIN 38 93 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 165 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 93 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 165 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 269 269 {ECO:0000313|EMBL:EDQ71373.1}. SQ SEQUENCE 269 AA; 30991 MW; EA4C7FB80F2219E8 CRC64; MGSLEPTHSG PSLSGSSDSD YGDDRVREQS NSKLPSSQFR GVVPQSNGRW GAQIYEKHQR IWLGTFNTEE EAARAYDRAA IKFRGRDAMT NFRPVTDSDY ESEFLRSHSK EQIVEMLRRH TYDEELDQCK KVFNMDVAAN AVRARRRALE INTLKECAPT REHLFDKAVT PSDVGKLNRL VIPKQHAERC FPLDLSANSP GQTLSFEDVS GKHWRFRYSY WNSSQSYVLT KGWSRFVKEK KLDAGDIVSF ERGPSQELYI DFRRKQVIP // ID A9SBU2_PHYPA Unreviewed; 313 AA. AC A9SBU2; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 41. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ71471.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_127167 {ECO:0000313|EMBL:EDQ71471.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ71471.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544952; EDQ71471.1; -; Genomic_DNA. DR RefSeq; XP_001763829.1; XM_001763777.1. DR UniGene; Ppa.17736; -. DR GeneID; 5927002; -. DR KEGG; ppp:PHYPADRAFT_127167; -. DR InParanoid; A9SBU2; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 219 313 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 219 313 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ71471.1}. FT NON_TER 313 313 {ECO:0000313|EMBL:EDQ71471.1}. SQ SEQUENCE 313 AA; 34581 MW; FC839547DBEA5241 CRC64; VPREFSESYG DDLRGPVSFH GANGKVWSVE VGGPAKFLGF KGGWRSFVAD NSLKRGDQVL FLLVSTKTFS VYVFNKLGVE TIPSPCVTPM RAAPMSGKRK REDVNDEAGM NVRASDTDSS SESEDTEASP QHSGGKVYND EVCFPVKMKV RRKCTAKVSR VNAHPTKKSV GGSAGKDGMM YEAGSCSRTY ESLRRKVTLA ERERALVAAN AFVTEGPSCP VVMMPSHVYR GFWLTIPGKF SKAHLPNDRI NIKLQDIHGF QWSASWIKSD HHTGVSGGWA AFSRDHRLEE GDVCVFEVID SEDWTILVHI FRV // ID A9SC22_PHYPA Unreviewed; 620 AA. AC A9SC22; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHYPADRAFT_127229 {ECO:0000313|EMBL:EDQ71329.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ71329.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544953; EDQ71329.1; -; Genomic_DNA. DR RefSeq; XP_001763925.1; XM_001763873.1. DR ProteinModelPortal; A9SC22; -. DR GeneID; 5927127; -. DR KEGG; ppp:PHYPADRAFT_127229; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR KO; K14486; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 105 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 593 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 105 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 69158 MW; EC8237C6C59502A3 CRC64; MDELNCELWH ACAGPLTQLP PVDSLVMYWP QGHIEQVRAA DVYQASKQFS NLPAHLLCRI SKIELQADPQ TDEVFAQMDL TPQYELSKET KDAPSPIQQS NVRSFCKTLT ASDTSTHGGF SVPRRAAEEC LPLLDHNMVP PCQELVAKDL HGKDWSFRHI YRGHPRRHLL TTGWSVFVSQ KRLVAGDTVI FLRGENGQLR VGVRRASKQQ PQARSTHFSS ANLHLGVLAA ASHAATERLR FSVIYNPRTS PSEFVIPYHK YLRSEDNNLT VGSRFKMKFE TEESTERRYS GTIVEISDVD PLKWPSSAWR SMKVEWDESA SERHERVSPW EIEPLVPIST LPTPPVGPRP KRRPPTFDSS VSWASYMGTG AYQFRDPSCN KILPSWLTNS KSANLTSPPV PARSQLPITS LNNDPKVLHA HNLSFELWET VEQEQLNASP ALEQQCKLFG FNLADKVVPT PVSSAPSLCE DSEGSGPWSS SDHTSSTSAD TRVGMIVTGT YQPLVAPVRS GTKVYYSGKV GRTIDLKKCE SYAALRRMLA SLFGLEGQLD DVTKGWQLVY TDHENDVLLV GDDPWEEFCN CVRSLKVLSP QDAAGQSVGK YPMTNCDEDD DWQSAVQSSG // ID A9SCG4_PHYPA Unreviewed; 875 AA. AC A9SCG4; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_127416 {ECO:0000313|EMBL:EDQ71206.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ71206.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544954; EDQ71206.1; -; Genomic_DNA. DR RefSeq; XP_001764067.1; XM_001764015.1. DR UniGene; Ppa.6039; -. DR GeneID; 5927215; -. DR KEGG; ppp:PHYPADRAFT_127416; -. DR InParanoid; A9SCG4; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 740 824 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ71206.1}. SQ SEQUENCE 875 AA; 97238 MW; 6DE7074CBD8BB84F CRC64; LAVERRSLNS ELWHACAGPL VSLPPVGSRV VYFPQGHTEQ VVAASTQKEA DAHIPNYPNL PSRLVCLLDN VTLHADLETD EVYAQMTLIP VLPANEKEAL ISPDIGMRSR QPTEYFCKTL TASDTSTHGG FSIPRRAAEK VFPPLDYTQT PPAQELKARD LHDQEWHFRH IYRGQPRRHL LTTGWSVFVS AKRLQAGDAV LFIRDDKGQL QLGIRRQNRQ QTVMPSSVLS SDSMHIGVLA AANHAAATSS RFTIFYNPRQ SPSEFVIPVA KYQKAICSLQ VSVGMRFRMV FETEESSVRR YMGTITGMGD LDPIRWPNSH WRSLKVGWDE STAGERQRRV SLWEIEPLTT PFLLCPPPVA FRTKRPRGGR DSTSKKSSFW SGDEDTGVLG GLNFRNLSMD SWMRPQQPGL PTQQNEYYRA LAAAALQEFR TPDCSKHPTS RSQPSISPQM QFRSQPQMQS GHHGVQHVSE ACGPLLQLSS SRPQSPLEVG MNMPQCSGYS EEDIQMASSP SASGSYPLHS MLGRTHLGCE TGQVGLMMRP TQNAQQSQSG PILHGGKTSP YFFFRTIPIS LRINCANVLQ VSSSWYPSNR DPNQHDVSAR MNQLDTSPTS RVSGSFSLSQ QSEGNGQSGL TGMPVPASSF MFRESGQEQD SVQSDRHLLF GVSIEQQPLG ASNPVASIHS QSYPKNKDVH NRFSGNNMLQ GSYCSSTMPD ISTMNGVGLD ENGMCQRGAP WATMSPAPVR TFTKVHKLGS VGRSIDVQKF QNYSELRAEL ARLFNLDNLL DDPQRTGWQL VFVDNENDTL LVGDDPWEEF VNYVRSIKIL SPNEIQQMRQ EQLEILNTVP MQQRPTCSNS EDARTQTSPP NTSTLSLEHG HSGPG // ID A9SCH8_PHYPA Unreviewed; 340 AA. AC A9SCH8; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ71152.1}; GN ORFNames=PHYPADRAFT_77514 {ECO:0000313|EMBL:EDQ71152.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ71152.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544954; EDQ71152.1; -; Genomic_DNA. DR RefSeq; XP_001764013.1; XM_001763961.1. DR ProteinModelPortal; A9SCH8; -. DR EnsemblPlants; PP1S65_254V6.1; PP1S65_254V6.1; PP1S65_254V6. DR GeneID; 5927282; -. DR Gramene; PP1S65_254V6.1; PP1S65_254V6.1; PP1S65_254V6. DR KEGG; ppp:PHYPADRAFT_77514; -. DR InParanoid; A9SCH8; -. DR OMA; CEKLPAC; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 27 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 37465 MW; F36473BD2A9EEAA1 CRC64; MSRTGASPPL SNIDVQTMVL NSDAPCFVKT ITRAMTERND RLVIPIEFIN KHGNMLHSVI SLTGPNGCPL RVMLKVRTCA GRDGRLNVSV FMAHGWKYFV TENCLQMGDR IIFQLVARSR FRVLLCAQPH EEAVFGNLIS SSKDHESQLD SPSVISEAPP LPEVTSNQTS SLSPSRINLN AVENCLNAEP MQWTYSERAK IKSVEGINPL LLSKDICHNS LGLNSAINLN SRYPQFTKKL TGINVPQKGA GDDLRLELPS HFVRAHGDRF QASVFLLGPG SNFVVVKLSV RVNGNGNRVQ FRGGWKEFSI AHGLKVGDVL LFSLIGLSKF VVKVFSLTPQ // ID A9SGA4_PHYPA Unreviewed; 126 AA. AC A9SGA4; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 39. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ69860.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_33929 {ECO:0000313|EMBL:EDQ69860.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ69860.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544964; EDQ69860.1; -; Genomic_DNA. DR RefSeq; XP_001765397.1; XM_001765345.1. DR STRING; 3218.PP1S75_174V6.1; -. DR GeneID; 5928562; -. DR KEGG; ppp:PHYPADRAFT_33929; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; A9SGA4; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 30 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ69860.1}. FT NON_TER 126 126 {ECO:0000313|EMBL:EDQ69860.1}. SQ SEQUENCE 126 AA; 14729 MW; 3C19E0DAF7DA747D CRC64; SRRRPVTAEE RDRVRAAALK FESQTKRPSF MVVMMPSHVY RGFWLTVPQE FSRLHMPRKR TTITVQDEFG FQWPGQWVVN SLHGGLSDGW AAFSRDHYLE EGDACVFEVL NLKIPLLLVH IFRVVE // ID A9SJT0_PHYPA Unreviewed; 369 AA. AC A9SJT0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 46. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_131154 {ECO:0000313|EMBL:EDQ68519.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ68519.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544975; EDQ68519.1; -; Genomic_DNA. DR RefSeq; XP_001766666.1; XM_001766614.1. DR STRING; 3218.PP1S86_1V6.1; -. DR GeneID; 5929910; -. DR KEGG; ppp:PHYPADRAFT_131154; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; A9SJT0; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 107 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ68519.1}. SQ SEQUENCE 369 AA; 41526 MW; 13C94D047E912FE1 CRC64; INSELWHACA GPLVSLPPVG SQVVYFPQGH SEQVAVSTQK EADTHIPNYP NLRPHLVCTL DNITLHADLE TDEVYAQMVL IPSQDPDKET MLLPDAVVQN KQPTEYFCKT LTASDTSTHG GFSIPRRAAE KVFPTLDYNQ QPPAQELVAR DLHDQDWHFR HIYRAGQPRR HLLTTGWSVF VSAKRLQAGD AVLFIRDDKG QLLLGIRRAN RLQTMMPSSV LSSDSMHIGI LAAASHAAQT SSRFTIFYNP RQSPSEFVIP LAKYQKAVYS TQVTVGMRFR MVFETEESTV RRYMGTVTGI GDLDPVRWPN SHWRSLKVGW DESTAGERQR RVSLWEIEPL TTPFLSCPPP LASRSKRARG IHGKTLLSF // ID A9SQG1_PHYPA Unreviewed; 87 AA. AC A9SQG1; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 39. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ66514.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_39104 {ECO:0000313|EMBL:EDQ66514.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ66514.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS544993; EDQ66514.1; -; Genomic_DNA. DR RefSeq; XP_001768576.1; XM_001768524.1. DR UniGene; Ppa.7124; -. DR GeneID; 5931881; -. DR KEGG; ppp:PHYPADRAFT_39104; -. DR InParanoid; A9SQG1; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}. FT DOMAIN 4 81 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ66514.1}. FT NON_TER 87 87 {ECO:0000313|EMBL:EDQ66514.1}. SQ SEQUENCE 87 AA; 10551 MW; 93F5EE0F3289E4D9 CRC64; LTVTDVGELG RIVLPKRDAE YQLPRLEAKE GKLLTMEDYN SINKWTLRYK WWPNNKSRMY ILENTAYFVK YYNLREKDEI IVYKDAQ // ID A9SU27_PHYPA Unreviewed; 613 AA. AC A9SU27; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 44. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ65368.1}; GN ORFNames=PHYPADRAFT_166568 {ECO:0000313|EMBL:EDQ65368.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ65368.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545007; EDQ65368.1; -; Genomic_DNA. DR RefSeq; XP_001769806.1; XM_001769754.1. DR UniGene; Ppa.14531; -. DR ProteinModelPortal; A9SU27; -. DR GeneID; 5933043; -. DR KEGG; ppp:PHYPADRAFT_166568; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR021373; DUF2993. DR Pfam; PF02362; B3; 1. DR Pfam; PF11209; DUF2993; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 356 463 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 604 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 356 463 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 511 604 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 613 AA; 68276 MW; C093385EA29D93FB CRC64; MALVTMPLVG VRHSQWYLCH GHSAMVEHHQ PLEHCNKPAL VPAFSVISTS LSGRLHIACA DRSYGFSSRT NKKDNRVFSK FSQLEDGEYS TIQLPGQLSP SRCFVGRLLE KALLVLLKSQ LDDCGDLNVA VGGSNWDLLR GKVKRIEVSA KKAVYKGIVL SEVGLAASNV RAKLGKNRLF QQPFIVHANI RVREQDFNTS LTSSILSSSL NDILPRYSQA IQVQYDNGNL RFSSSDKQSG RYGELKYPIT VRVDVEESGE VISIEASQSA SSKMTFKVGP EVKITDFQVG SSWLLLTGEF LETKIDRDLP TSRLGISSEA AIPALYRVTS TVQNMSSHEK EDKDRLVCGT TPSTNPSFIK TVRHSRNLVA LEIPAPFVKE HGHNMKANVI LQGPSGRLTV VHLTIRSYDV QDRVHFGGSG WKTFVLENGL KVGDHLIFSL LQMTTIHEKS AAPKLPVSFV TQAPSPLSAT HLWASPQNLS LPHVKNEVVY ARGTERTKRN VDMLIDKFHC PHFVTAIRES NLASKLCVPA EFFLKYEKFF AERINTFQGL TGRVVQLRFS STRNLSFTIG WEDFRNENSI KLGDVLLFSL RAPGCWLVQL VESSVDELYM GND // ID A9SU54_PHYPA Unreviewed; 411 AA. AC A9SU54; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHYPADRAFT_135391 {ECO:0000313|EMBL:EDQ65243.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ65243.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545008; EDQ65243.1; -; Genomic_DNA. DR RefSeq; XP_001769883.1; XM_001769831.1. DR UniGene; Ppa.16871; -. DR ProteinModelPortal; A9SU54; -. DR GeneID; 5933088; -. DR KEGG; ppp:PHYPADRAFT_135391; -. DR InParanoid; A9SU54; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 141 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 46606 MW; 2BF78B355864FDC6 CRC64; MPSIFDVPSF CILKLSRRKC AKIKSLIHPV GEKRINSELW HACAGPLVSL PPVGSQVVYF PQGHSEQVAV STQKEADIHI PNYPNLRPHL ICTLENVTLH ADLETDDVYA QMVLIPTQDP EKETMLLPDV VVQNKQPTEY FCKTLTASDT STHGGFSIPR RAAEKVFPTL DYTQQPPAQE LVARDLHDQD WHFRHIYRAG QPRRHLLTTG WSIFISAKRL QAGDAVLFIR DDKGQLLLGI RRANRLQTIM PSSVLSSDSM HIGILAAASH AAQTSSRFTI FYNPRQSPSE FVIPSAKYQK AVYSTQITVG MRFRMMFETE ESTVRRYMGT VTGIGDLDPV RWPNSHWRSL KVGWDESTAG ERQRRVSLWE IEPLTTPFLI CPPPIVLRSK RARGIHGKAL ISRRRPRIVY I // ID A9SUU7_PHYPA Unreviewed; 736 AA. AC A9SUU7; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ65122.1}; GN ORFNames=PHYPADRAFT_84275 {ECO:0000313|EMBL:EDQ65122.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ65122.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545010; EDQ65122.1; -; Genomic_DNA. DR RefSeq; XP_001770140.1; XM_001770088.1. DR ProteinModelPortal; A9SUU7; -. DR STRING; 3218.PP1S121_146V6.1; -. DR GeneID; 5933293; -. DR KEGG; ppp:PHYPADRAFT_84275; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; A9SUU7; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 107 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 338 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 338 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 736 AA; 81688 MW; E6C265AD27A71033 CRC64; MVKTMSCPCV LGLVFEGYCI ERLLLQNLDF RIVFLDHLLR IFYAILLLTK TCCSGSQFWN LKIAKRELEA LTNCLRLHGA EEDDVHPNLL CTPGGSEADK NVQTDRHPSF LKTMTESTID TLKLPRSFLL DNSGRLSDSV ILEGPCREQW RVELHGYGQS FNVSFGQGWS KFVVDHVLQV GDHLVFFLLQ KSYFQVEVYD GFGVQKRSAL DAVNTPLKTN TKNVDVVQQS LDLDHGVVQT EQKKPESATQ PENAAQPLID LIQSSESESM LMSARKIDMI IAEALRSEDS GHPIMKSPEV EKRKVLPPHV LVNGTVTSKR RPVTELEKAR ALQAASSLEL VKPNVLVVMT KSHSIPKRFS KDWLPSETKE VTLTNKSGHT WPAKWLASQG GLSAGWRRFS LDHRLEEHDV CVLELVDKAN LVLLVHIFRV LGSPEEDEGL YFPTNSAVKA FDGKRNISNS PQVHDDHKGV SPYGNGSESD KKGSEHSSRG SDGLNDKSTS EPDKMTNSLK RKICVLGLEA LPDKTKALGD QSHRETGTAA IHDVQAAEPD LGVRTRDPCG AELRPTAARQ DLVDFRSTLM KLTKDLLVKN GVGSIVPAKG VLPGNPAANA DDVHEQLTNF VDFPTTKRQH TLPSVSQEGD GKDQSGEDNA NLADAPIPEQ HTPSVRHERP RKELGQEYKV VHIYKGRSVG TSTEFLAELE GYSESIVSKL PRDDDTGFLW VPSNQFSWDM QTCCIE // ID A9SXJ8_PHYPA Unreviewed; 372 AA. AC A9SXJ8; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 47. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_136986 {ECO:0000313|EMBL:EDQ64110.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ64110.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545022; EDQ64110.1; -; Genomic_DNA. DR RefSeq; XP_001771109.1; XM_001771057.1. DR STRING; 3218.PP1S133_56V6.1; -. DR GeneID; 5934316; -. DR KEGG; ppp:PHYPADRAFT_136986; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; A9SXJ8; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR ExpressionAtlas; A9SXJ8; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ64110.1}. SQ SEQUENCE 372 AA; 41877 MW; 25BAA27F1FD4B88A CRC64; GERRSLNSEL WHACAGPLVS LPPVGSRVVY FPQGHIEQVA ASTQKDADAH IPNYPSLPSK IICLLDNVTL HADPETDEVY AQMILLPIQI SEKEALLSPD LEVVNKQPTE YFCKTLTASD TSTHGGFSIP RRAAEKVFPP LDFTRVPPAQ ELVARDLHDQ EWHFRHIYRG QPRRHLLTTG WSVFVSAKRL QAGDSVLFIR DDKGNLLLGI RRANRQQTVM PSSVLSSDSM HFGVLAAASH AAATSSRFKI FYNPRQSPSE FVIPLTKYHK ALYNTQFTVG MRFRMVFETE ESSVRRYVGT ITGLGDLDPI RWPKSHWRSL KVGWDESTAG ERQHRVSLWE IEPLTTPFLL CPPPLALRSK RPRGMPGKGV QL // ID A9SY08_PHYPA Unreviewed; 227 AA. AC A9SY08; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 57. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ63972.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_45121 {ECO:0000313|EMBL:EDQ63972.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ63972.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00585200}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545024; EDQ63972.1; -; Genomic_DNA. DR RefSeq; XP_001771261.1; XM_001771209.1. DR GeneID; 5934469; -. DR KEGG; ppp:PHYPADRAFT_45121; -. DR InParanoid; A9SY08; -. DR KO; K09287; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585222}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585208}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}. FT DOMAIN 6 61 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 131 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 61 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 131 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ63972.1}. FT NON_TER 227 227 {ECO:0000313|EMBL:EDQ63972.1}. SQ SEQUENCE 227 AA; 26384 MW; CD1F5F15CFDF1060 CRC64; KLPSSQFRGV VPQSNGRWGA QIYEKHQRIW LGTFNTEEEA ARAYDTAAIK FRGRDAMTNF RPVTDSEYES EFLRSFSKEQ IVEMLRRHTY DEELDQCKKV FNMDAAANPV TPPNLPRDEP RESSPTREHL FDKAVTPSDV GKLNRLVIPK QHAERCFPLD LSANSPGQTL SFEDVSGKHW RFRYSYWNSS QSYVLTKGWS RFVKEKKLDA GDIVSFERGR NHELYID // ID A9SZU3_PHYPA Unreviewed; 758 AA. AC A9SZU3; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 50. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ63288.1}; GN ORFNames=PHYPADRAFT_86215 {ECO:0000313|EMBL:EDQ63288.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ63288.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545032; EDQ63288.1; -; Genomic_DNA. DR RefSeq; XP_001771859.1; XM_001771807.1. DR UniGene; Ppa.15126; -. DR ProteinModelPortal; A9SZU3; -. DR STRING; 3218.PP1S143_82V6.1; -. DR GeneID; 5935098; -. DR KEGG; ppp:PHYPADRAFT_86215; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; A9SZU3; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR011989; ARM-like. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}. FT DOMAIN 531 651 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT COILED 34 84 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 758 AA; 83927 MW; C8C42A66F62B8492 CRC64; MELARSPLLC SAPLSTSFSS FSSSLLSSSS LSSRQTGFEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEFVS KRARCWHLVY RRCRRLFVIA RITETRREVL KYRCGAKSLS RRIIIFPPHT QRAKVYSKAA LGTGGDASLS TTTRVETQTG VVIVVLGGFN RINFDANYLE REHGVGNYLP SISFIQPCSA MVNQGSGDFS SQDGSLPSCS STSSERNQSS GSGLGEGCSL LMDDEVRAML KKVTVNEAVL NRAIQSLGGG EKGLKSLMGY IMIWVKQQKE CKSARSNSGE QSSGSPFNFS MLGAEAAAEA EAIVLQHTSD AFQSLNGILQ PSATQSPVNL PDTQHQQRFK SRRLMMEDAE VDAGLKVDAG FCPSNFMAVG VPPGDYSMYM PAMAGPAVSP YMPRLNYDSG MQQPVCNMQS MIPSTTSQNS MQPIEQTPAM ATKAARRNRM ARQRQSMMKQ HARATNQANP VSVGFWVWNG APPAGGTKKT EISHSGAQPA QGTAVNAEQK GRNMDSLTFL LQKELRPSDV GSLGRIILPK KEAEQHMPFL SMRGGVCIQV EDFDSGHIWN LRYSVTPPPK MGSSPLSKSA TPSFWPNNKS RMYLLENTGD FVKSHRLVEG DLLIIYRSQQ GDYVMRGKKR KTQRLETESV KIQFAHSSAR DSNEEHTSPK GNGLPMERLY GGGPPEKFVK EEPPNLDDDP FLKDMMMSMG PSFGSDATSL QPLERFPSLN LDFPLDEIMA VNPKTELE // ID A9T430_PHYPA Unreviewed; 214 AA. AC A9T430; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 39. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ61737.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_47563 {ECO:0000313|EMBL:EDQ61737.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ61737.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545051; EDQ61737.1; -; Genomic_DNA. DR RefSeq; XP_001773364.1; XM_001773312.1. DR UniGene; Ppa.10350; -. DR GeneID; 5936631; -. DR KEGG; ppp:PHYPADRAFT_47563; -. DR InParanoid; A9T430; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 120 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 120 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ61737.1}. FT NON_TER 214 214 {ECO:0000313|EMBL:EDQ61737.1}. SQ SEQUENCE 214 AA; 24908 MW; 17C48478616B9C18 CRC64; GDEMAAMSYE EARKQRMDEN KRRMEELGLV DLSKNLKQLK PKIPAKKPEK RKIDSQEARR SSRVASKPVV SYKEQLDRVR GIRETRVKKS SSRRKLTESA RMATIEAANE VIKGIEYPAF VKPMQHSNTS NSFWLGIPAD FCKERMPLAD EKFILEDENG KEWECLYLAH KEGITGGWRK FLLDNELEDG DCCIFELKSP LRFKVHVLKW DEED // ID A9T4J0_PHYPA Unreviewed; 1103 AA. AC A9T4J0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 58. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHYPADRAFT_168019 {ECO:0000313|EMBL:EDQ61696.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ61696.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545052; EDQ61696.1; -; Genomic_DNA. DR RefSeq; XP_001773496.1; XM_001773444.1. DR ProteinModelPortal; A9T4J0; -. DR STRING; 3218.PP1S163_119V6.1; -. DR GeneID; 5936668; -. DR KEGG; ppp:PHYPADRAFT_168019; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; A9T4J0; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 196 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 811 895 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 196 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1103 AA; 122937 MW; 5D1E411D30FBC3C2 CRC64; MKWTPVSNDN FYVKEGWTVI RGQSFVSFIP FSSLAQQESP GSAWTVWLKL ISNMEMEVLL EVSALRLQVE RRSPTSELWH ACAGPLVSLP PIGSRVVYFP QGHTEQVAAS TQREAETHIP NYPSLPSRLV CLLDNVTLHV SDRYSMSLID VVIQADLETD EVYAQMTLIP VPPANEKEAL MSPDIGIRSR QPTDYFCKTL TASDTSTHGG FSIPRRAAEK VFPPLDYSQT PPAQELKARD LHDQEWHFRH IYRGQPRRHL LTTGWSVFVS AKRLQAGDAV LFIRDDKGQL QLGIRRQNRQ QTVMPSSVLS SDSMHIGVLA AANHAAATSS RFTIFYNPRQ SPSEFVIPVA KYQKAICNLQ VSVGMRFRMV FETEESSVRR YMGTITGMGD LDPIRWPNSH WRSLKVGWDE STAGERQRRV SLWEIEPLTT PFLLCPPPLT FRAKRPWGGR VDEEMDSMLK KASFWSGDSG SHMDALGALN LRNFGMSSWM RTPQQRVEPG LPAQQNEYYR AFAAAALQEI RCSDASKHAM SHAQPSLSTS QIEFRSQSPQ SNQHTAQHIP NTAGPVLQLS SSRPESPLDV GMNMAQCSGY SESDTHMTSS AYTPGSYPLH SMLGRTHLGC ENGQMTYMMR PTQSAQQSQP ESIIHGGSVR EPQFSSSWYP SNRDTSEHDV SARMNQLDTS PTSRVSSCFP FPQESQVNGQ SGLTGLPVPT SSFVYRENGQ EQDSVQSDRH LLFGVSIEQP LVGSNSVTSL QPHAFAKSKD PQSRFSGNTV LQGSYYPSGN ADIPTMNGVG LDENGIFMRN ASWSAMAPTS RTFTKVHKLG SVGRSIDVQK FQNYSELRVE LARLFNLEGL LDDPQRSGWQ LVFVDNENDT LLVGDDPWEE FVNCVRSIKI LSPNEILQMS QEQLEILNSV PMQQRPTCSN SEDARTQTSP VLACGLLLKH VIRENEIEKL LLKLACPILF CKATPLSQVL IAADSVARRS FGLAANLKRS LHESWAMVIS LKPGVHIGSL PKYYVWESYS ISELVHRVVD LHPFWSVAER LSGTRSSDYE TVVPMSTGLV KLTVQIAPGA CAQSVVVQEL AAPKRHTQYL TAGLLFQTQR VVV // ID A9T564_PHYPA Unreviewed; 202 AA. AC A9T564; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 39. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ61366.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_140461 {ECO:0000313|EMBL:EDQ61366.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ61366.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545056; EDQ61366.1; -; Genomic_DNA. DR RefSeq; XP_001773749.1; XM_001773697.1. DR GeneID; 5937030; -. DR KEGG; ppp:PHYPADRAFT_140461; -. DR InParanoid; A9T564; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 113 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 202 202 {ECO:0000313|EMBL:EDQ61366.1}. SQ SEQUENCE 202 AA; 23458 MW; 248EA758B79612F1 CRC64; MAVDKKAPAL SYEEERKQRV MENKRIMQEL GLVDLSNELK KLKKDSAKKP VKRKMLPAVS YRDQLDLLPG FRARSGTGGE RQGLPRRYLS DTVRLATIEM AEEAFKAIKN PGFVKAMLHS HVSSCFWLGL PHHFCKKHMP YEDERFTLED EDGKEWECLY LARKTGLSGG WRGFSLDHDL VDGDCCIFEL VRPLRFKIYF FR // ID A9T5X3_PHYPA Unreviewed; 701 AA. AC A9T5X3; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ61207.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_88498 {ECO:0000313|EMBL:EDQ61207.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ61207.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545059; EDQ61207.1; -; Genomic_DNA. DR RefSeq; XP_001774017.1; XM_001773965.1. DR STRING; 3218.PP1S170_63V6.1; -. DR GeneID; 5937216; -. DR KEGG; ppp:PHYPADRAFT_88498; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; A9T5X3; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 141 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 378 471 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 378 471 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 701 701 {ECO:0000313|EMBL:EDQ61207.1}. SQ SEQUENCE 701 AA; 78254 MW; C6CCBF3A5D764B50 CRC64; MQQRCWKIDD SGDDDCASPR RCRLRNGVIR MHNELRGHCF AFHGGWVCGS MCFSIENLSL SVVWHPRLCH NCALRRRSSE QYSCTSILQS LFPDKMERAC ELCLKNCLRL HGAEESEAAK SCLICVLWRS EGVKSDQTDR HPSFLKKITE STMSTLELPT SFVRDYIGSL HESVILEGPS SKQWRVELHG YGEGFNISFG QGWNNFAVDH GLQIGDQLSF SLSKKSYFQV EVYDGFGVLK RRAPDVINTP MEVSTKNVER KNQQNLDTSP CVGRTEPNNL KNATQPAGHL LTNLAKLTRS ECRIISSPNI DAEIAKASKS EDSRHSIMQF ARVDKGELLP PHKFVNGTVM SKRRPITELE KVVALKAARA LNLVKPNTLV VMSKGHVYKG FLLGIPKQFS KDWLPSESKE ITLANKSGHR WTVKWLPSHG GLSAGWRRFS LDHRLEEYDV CVFELVDKAH FVLLVHIFRV LGSPQEDEGL YTPTSPLAKS SEGKRNNRKP FQVSQDIKVD STPRKASGHV TKRSQHSSPG PDSQNGKSTS EPAVEVISLK RKICVLALPA LSAKKGLGNQ NHQPSDTVRA GPNIEAAVDS ALSAYTDFGG KVRVAPRAPC DVERTPTTAR QDSEAFRSEL MKLTKDLLIR NGVGRADPTK HVLPDGHALS ADDMHKHLAK FVDTPPSVSR KGKGEWRGRE YKVVRICRGR N // ID A9T6J8_PHYPA Unreviewed; 621 AA. AC A9T6J8; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDQ60973.1}; GN ORFNames=PHYPADRAFT_168363 {ECO:0000313|EMBL:EDQ60973.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|EMBL:EDQ60973.1, ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ60973.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545062; EDQ60973.1; -; Genomic_DNA. DR RefSeq; XP_001774197.1; XM_001774145.1. DR UniGene; Ppa.3116; -. DR STRING; 3218.PP1S173_143V6.1; -. DR GeneID; 5937414; -. DR KEGG; ppp:PHYPADRAFT_168363; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; A9T6J8; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 402 503 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 402 503 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 621 AA; 69023 MW; EF25FEEAFD98DA87 CRC64; MPFHGPKSSL VGEGLTYSKN ERERVRESEG VQLMHLPPAL PLVWKDAEIF HIANLLLAHC GRVSEDESGY EWGGAWTELP RGLKTANNET AQVCPVLSKD IQWFDLAACP ASAVLKKVTV NEDSLSQAIQ ALGGGEKGLK ELIGHIMLWV KQHNGEMDYG KTSLSQKLEK LHPPQMNHAL EFASGKGISG TVYNPNLASE GYDQRNEKSP CPFVRVQSSE DLQDMNHLFQ CIKSRRLMGE GGLDINFPRD VHSGSGTFVD VRGSVPDVLH FPSGGMGPRS PNHIGPAMLQ GMPCELDIQR PLIPCAQAGL SFSGEHDGLS RIFTATTRAA RRNQISRQRQ SGLQSNSTFT PSNTVTAVSS ECGLWSVAPP AWDMSVGVFL SRTQSPSCGP DISDPKMLTF LLQKELRPSD VGNLGRIILP KKEAEAHLPI LALREGILLQ MEDFDSGHCW KIRYRFWPNN KSRMYLLENT GEFVKSHRLE EGDLLVLYKI QEGNYVLRAQ KKVHSESSGA PGSQQKNAYS LARDFPEASK TEEPLKEKDI VGFAEWSCGK VNEERNILVR DDDPFFKDDQ KHKISSSFSP EPLQSLERFP SLSIDFPLDE MMPWDDPDEF NTDSELAELV G // ID A9T6K2_PHYPA Unreviewed; 942 AA. AC A9T6K2; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDQ60975.1}; GN ORFNames=PHYPADRAFT_88752 {ECO:0000313|EMBL:EDQ60975.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|EMBL:EDQ60975.1, ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ60975.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545062; EDQ60975.1; -; Genomic_DNA. DR RefSeq; XP_001774199.1; XM_001774147.1. DR ProteinModelPortal; A9T6K2; -. DR GeneID; 5937410; -. DR KEGG; ppp:PHYPADRAFT_88752; -. DR InParanoid; A9T6K2; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 84 174 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 678 740 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 174 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 678 740 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 942 AA; 105159 MW; 1291A6FE73A7C08F CRC64; MATLPELVHL TALHAEQLLG HEWGCEEEEE EEDDEESFDC MANSSFESVG SDIETTHGTG LPLIVPRFLK TIPEYSTPSN KNCNLRFQWL LSASSFSEKK IPAVYIREYI GMYSNETYIL EDVTGFEWVV TFSSAALRDG WKAFAIDYQL EKGDQIMLGL LAMKRFSVNV FNKFGLEKVS TRQPLNRRSS TGTVIDKETE LLPLVSKPMR GVAEDPPLNL VHSKATNRRE KLNGSPQHDS QMPESNSFCS VLPAEASDQN ENKVTKGILR SRGSFEWNLL HEQVDRDEAK TSVMNMSSEE SEDSVQVLLA KAILAKAKQR RLKKRKMAFA GTSPVETRTE ATYSERIFRN EVSKIFEDKI RAMNLKSRNV GMASSGSAGL SSGDLIDSLK NDFAASHYDT GAVKSREDPK VSMNGNNDHD VEVSQVDVCH RRYEPQNQNE ITDQLGVVKE ISLPDHRQTE VRTQTKTARV EIEDDPMRRR VEIRQVGVLR SEPGGRDQPI SVFQPALVKQ EPSLSLGNNL GSAMAAARAH SHDNEKSANC GFATVAANHR FGAVTLVGPR TREYRNLKRD YMTSEDQEPP DAISPNSNAP SSLAGDNKLR ESQKQAYEVA KAFSVNTKNP SALLLMRTRA SKNTYTCIAL DCRRYCGTLT IYCLALPCSN SMFVSVECAE ILPTVPAELI LMDTDGVMRK VDWRPGLRYL YGQGWKDFVE THNIQAGDVC VLEKTDMFEY KVLIHVFRSN DIERVSPAQA PAATPKFGAS PGGKFRAEGK RDRRANSPLL PCTDKFRKCL TKAPTNGVEE GELPKSADVE SAGVKRPGSF REREGAARRG SAGQSLFATH AQIRKVAEAG TRSSPPSAVV DKQQEQQATP SQDARKHYVV QKLIDRRKSL QGLVFLVEIN EEIMPLVGSK KKTKIGATQD ERGRWWVPHH HFNFDFSSCY IE // ID A9T7Q9_PHYPA Unreviewed; 887 AA. AC A9T7Q9; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ60558.1}; GN ORFNames=PHYPADRAFT_89186 {ECO:0000313|EMBL:EDQ60558.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ60558.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545068; EDQ60558.1; -; Genomic_DNA. DR RefSeq; XP_001774624.1; XM_001774572.1. DR ProteinModelPortal; A9T7Q9; -. DR GeneID; 5937851; -. DR KEGG; ppp:PHYPADRAFT_89186; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 59 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 887 AA; 99372 MW; 74701B4C7EDBCA3A CRC64; MTKGIFSEQL NVSQNTSEVV HKTQEGAQLR PICVESSHRC NIIHEEEKDA DRRWPHFTKK VTKYAVHNAP QAAICVPGTF MKECPHTFQS GNPITLVGPS GNKWEVRAEE RSILSAGWRE FARDHRLREG DQLHFTLRRP SHFVVEITDR NGDVKRSARK ATVTGKYAVA PVGSSLSAPM HEHARKRKER ETSFMFQDMA TIADLCEFKR ADARRGSNNN NYTSDKKLRF SERTKQRMCC EATDRREVVT ILDSEDEELE EQTYGLSKVE GLIKFMKDSN CVSRKWTASQ CDEIVKGDEV KRVATGEQWE RNKREFSGTV QENFDKQYEG EDDHLDEDDP AEQAFGDPLR RFTRIFDREP RRSRMNLQAR ELPGPTSNLD ASMQVAKPDK VDETVSEDIT RKFDYSSAPI AEREAVLTGW EQEEEEAHLV KGIKLANVVL GNTTKNISGS VAGSSHLADS CTNVQKFPQS PHIQDTAVGD EDPSREEGGG AVLVIPSHKT QLLGIISSID SIKGDERDSV HPLKQGLIRR EWEADFDNPK VEDEPHPTKP EARRHEDQCI LQSTCAPDAY ENIEVPLSNI EAKEIHLKMS VSCNPENIEQ TETEQPSNTS HFTNCTTSLA LPEEVSKEMS SSTFTPNTEK FHPQLATKNI SMKAAPSENV TDTCVSRSRC GPVAQADRDR ALASAQEWAE TAVKPNSIVV MKRSDVYTDF NLVNLTSRSS SQSLRSGGLL SRSFDFSKTS INPTRGVCAD MCSTSIPAHS CPVPEGYEFT ISGHQGNVTL RRGANILQGH LGGQQVAESE AQRRGLDEFF PQPFPGGRRH LRARALQQVP LSHQDAYLDA KGDLELKRQV VLDWRGHYQV LDANLVDTAR PTATTPPQKP KLRDTLT // ID A9TGJ0_PHYPA Unreviewed; 495 AA. AC A9TGJ0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ57509.1}; GN ORFNames=PHYPADRAFT_92471 {ECO:0000313|EMBL:EDQ57509.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ57509.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545114; EDQ57509.1; -; Genomic_DNA. DR RefSeq; XP_001777729.1; XM_001777677.1. DR ProteinModelPortal; A9TGJ0; -. DR GeneID; 5940916; -. DR KEGG; ppp:PHYPADRAFT_92471; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 143 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 143 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 495 AA; 56519 MW; B24E836DF8096E66 CRC64; MNVVFGTDRP QLALHRLNYQ FRAPVGKSNL NSLLHWSFSS RVFRGMICHE DARHASPHIT RPVHSWVILS WVSLPRTYIA NRVSAECLSS VHVMSDTRCS AGGCTEDLGD FHEKKFDRER CLHFTKSLQK WSLHHSPQSA VCIPTKFVEE HPDMLRKGNF IILEGPSKNQ WNARASNRPI LYAGWLAFAH DHCLREKDQL CFYLIKPLYF VVEVLNSYGN VRESALMATI TGKYALAPVL ITPRTPRQEC RKRKNLEICG PPTQISQDVP GHRMTFETIA ERCKVTARRG CYNGYAPGAI KRFSNNTKQW ECHEEKDGRQ VVTILDSSDE EKDERYRQFS FGSAQMQRYK PSKIQRLIKY PKDKGASVLH KSKPPTQHVD EVNGGKFVRN AMPVEEIVAG KRQTPKSIMI DKPGHESERK NLNFSGDSLT CQAPGSRVQD VMMRKLEEKI YIGALGHSND AEHKNTLKTT WVACERELVK IDDGMSKYHS IAPML // ID A9TGS4_PHYPA Unreviewed; 806 AA. AC A9TGS4; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ57339.1}; GN ORFNames=PHYPADRAFT_92566 {ECO:0000313|EMBL:EDQ57339.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ57339.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545116; EDQ57339.1; -; Genomic_DNA. DR RefSeq; XP_001777801.1; XM_001777749.1. DR ProteinModelPortal; A9TGS4; -. DR PRIDE; A9TGS4; -. DR GeneID; 5941014; -. DR KEGG; ppp:PHYPADRAFT_92566; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 201 302 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 489 539 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 201 302 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 806 AA; 89575 MW; DF774499E3B8A578 CRC64; MLGGDFPTLS QSQVRHAQFS NHIGSTCGEE SMERRGTFHS FFGKSTPTQE GTTKKSSSAL ASTLSTCQIP VLGHHVCDFN SVSKSPGGTS ILVGCVLGKA IVKPKQQIRG SVKRNPGEDR KELLATSPLN NGPTLKMTES PALCLATSLM FTPVGQLLDA YVHQFRVKSV CAMSTACITF LTKRNFTRWF FSLGTTMTFL FDKVASVTDC RSTGHFVLPK RKVEEHFPPI NKPGGIWMTL VDATGKEWSF EFCFWHSKES RIYYFKKFYP YVQSTDLRGG DTVFFSRLEP QGTLFIGYRK QKPPPPKQMK ALNCGASKDQ FKEREHSNGG LTYLANDWSP SLEEVATRQK KPTKLSADDA NVDYALDRGI IQRKKKRKKE FPPLSLAQRT KVIDHLAVGE ALIDKKSTSG RSSTPDTFQH DDRIAGVLGS KGKRLRVNAD EYAEWKEMQD LLRPAPGALP TVLTIEGHDF EEYEAPPVLI TRTYHSPEAH GENQWVKCND CGSWRRLSAD AFVPAGWICS DSDLDQGRAY CNAPQELSDH EIHQLLGLGL DAGKYQCHLN CVVFHISSKQ PDFLVIVYNE QEGRTETQED LNEDGDWTTP EHLYSAQADV CAYKQPTLWS AAMALVDGSL HRGTESYSEL KSCESDTSVP EFTDHGPGMA LQSPRLKQFC DLIEDSSSRR STFLETRGRK VYENPTDSDE FVDPAGAAKG YEIPRADCYD FLGPVGKLQV FQRSSSLYQV PLRSIVEAGH APVKSALHSS NNQCIVHLPS YRGYHNACMA GSAVSPTGCI HSTFRAENTT SVHNFS // ID A9TJC8_PHYPA Unreviewed; 717 AA. AC A9TJC8; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ56490.1}; GN ORFNames=PHYPADRAFT_93515 {ECO:0000313|EMBL:EDQ56490.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ56490.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545132; EDQ56490.1; -; Genomic_DNA. DR RefSeq; XP_001778697.1; XM_001778645.1. DR ProteinModelPortal; A9TJC8; -. DR GeneID; 5941922; -. DR KEGG; ppp:PHYPADRAFT_93515; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 37 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 717 AA; 80686 MW; D0AE5E926A98CF00 CRC64; MTFSEPETVE TKLSCRDFKE MLHCLQCSIY FVQKLTASNV LGIYTRRRTC QLTLPRQFVR EHGNRIRKSV VLLSGLSHGP WNLWLSICPS RPVMPEVTFS SGWRAFVAFN GLEEGDHLIF SLTAVSQFQV YIFNGNGHQK KPQMLEASVK WSDGIEFPQK KILNQSLGYN LAEGNAGLVC NVCPICARRR PLSEKEFAGT ASTDTCSQSS PHSSALNAQV SLEFSQKCRK YFPSFSKRIV ARDVFRLEIP QHFAVKYGSQ LLDSIQLQGI HESSPVRNLQ TISHLDKARV RLYLAGAGWD NFVTENMLRV GNELVFYLSA DSFFKVREDS YWNPVTGLNN VPSHAPAVLV TVMKPESFTL EHVVDSTVAY DSMFEKPAHS FKFVDILPRN EEMDLKGGNM KERMGNPHSG TTKEGTGTTE TPQISTDESS VRRFGDPMTG KKREKSSSGL HNLFLFFLCK RYKHGTAEAL VKEIDIEVAD LNYISPRNST SCESHFYGPV TQPCILTLCA KLGYVCLELL RSKFVDGHLA RIRVRIRFSN SHPQCKLMQR ILQKSPLQSC CSTEIYSERH HARECSGEAS QRKPLTSDPS FLKLLTLTRI NHLVGSCKKS SFWNHSKFPS TSTGHTAICF ARSSSFRGFQ NGSPVHTVAI YVRYDRVRPR LSLRKRGKNF CTKNGLEVGQ ELVFTLTADS CFVAGPWVQS SKVPLVSAFS KTALNQI // ID A9TLW4_PHYPA Unreviewed; 820 AA. AC A9TLW4; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ55599.1}; GN ORFNames=PHYPADRAFT_94456 {ECO:0000313|EMBL:EDQ55599.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ55599.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545150; EDQ55599.1; -; Genomic_DNA. DR RefSeq; XP_001779605.1; XM_001779553.1. DR ProteinModelPortal; A9TLW4; -. DR PRIDE; A9TLW4; -. DR GeneID; 5942810; -. DR KEGG; ppp:PHYPADRAFT_94456; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}. FT DOMAIN 540 590 CW-type. {ECO:0000259|PROSITE:PS51050}. SQ SEQUENCE 820 AA; 92586 MW; FF91C042E9B4C529 CRC64; MNSSRNPKSI LPSTSRFWSA RVSTGDCYLF PRNKAVPFPA SLSRCGFMGS GHGVGTNPNN EKAFCASLPA FTDYNSYLLY IEIQKTMEHA SDYIMKPITN GKKFREGTRI KSQCLPVISR LRVNPESDMR SLPITSHFLA GRSPWTQEVF FSHRSESQPL PMETSQRKAP ALWHQRCPPA RSQAIMYATL TQSRNQQVEL VYWLDASWEK VQANPNIKYE DLSNAILASI GSEICTSRFA PLTTLYFQME REGLVASITD CRSTGHFVLP KRKVEEHFPP INKPGGIWMT LVDAAGKEWS FEFCFWHSKE SRIYYFKKFY PYVQSTDLCG GDTVFFSRLE PQGTLFMGFR KQKPSPPKHM KAVNGGDSQD QSKRREQSNG GPICLANDWS PSPDELANPQ EKPVTMSIDE GNCKYASERG TSQCKRKRKK EFPPVSLSKR TEVVDHLAAD KALVEKKSTT RLSVSPEAPQ HVDKISGVLG SKGKRLRVNV DEYSEWKDTQ DLLRPAPGAL PSVVTIEGHD FEEYEKPPIL IKRSCCSLEA RGESQWVKCD DCGSWRRLPA DAFVPEKWNC SDNDRDLTRA YCNAPQEPIH HDSDQLQRFG LDVGKYPSQQ NHGLLYWLLP KNPCPLERTE GRIKDESESR EEVYEYDWAT PEQHHSARAD ACDYKQPTLW SAAMTLIDGS LRRGTDSYSQ LEKCSTYTSD SDSLDQSPSS ALQSPRLEQF CELIEESSPM STNSHATEAG RDLEVSTDCD EPIDSAGNGK RYEMTTTECY DFLGPPGKDS WIENGKVGTL GLVRFISNYE ASQPSFHLIN IYRSILEAGS // ID A9TP83_PHYPA Unreviewed; 84 AA. AC A9TP83; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ54778.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_29466 {ECO:0000313|EMBL:EDQ54778.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ54778.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545167; EDQ54778.1; -; Genomic_DNA. DR RefSeq; XP_001780405.1; XM_001780353.1. DR UniGene; Ppa.12174; -. DR GeneID; 5943609; -. DR KEGG; ppp:PHYPADRAFT_29466; -. DR InParanoid; A9TP83; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 84 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 84 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ54778.1}. FT NON_TER 84 84 {ECO:0000313|EMBL:EDQ54778.1}. SQ SEQUENCE 84 AA; 9880 MW; A1499BF29E850683 CRC64; VLQTSDVSNL GRIVISKKEA ESHLPYLAMK EGILITMEDF DTGQQWTFRY RFWPNCRSRM YLLESTGDFV RAHRLTKGDV LLLW // ID A9TP93_PHYPA Unreviewed; 420 AA. AC A9TP93; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 47. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_148548 {ECO:0000313|EMBL:EDQ54715.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ54715.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545168; EDQ54715.1; -; Genomic_DNA. DR RefSeq; XP_001780425.1; XM_001780373.1. DR UniGene; Ppa.2261; -. DR GeneID; 5943656; -. DR KEGG; ppp:PHYPADRAFT_148548; -. DR InParanoid; A9TP93; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 420 420 {ECO:0000313|EMBL:EDQ54715.1}. SQ SEQUENCE 420 AA; 45718 MW; C5689D3E1E8ED46C CRC64; MSVKSESLDD IGGHEKKSVT GSEVGGLDAQ LWHACAGGMV QLPHVGAKVV YFPQGHGEQA ASTPEFPRTL VPNGSVPCRV VSVNFLADTE TDEVFARICL QPEIGSSAQD LTDDSLASPP LEKPASFAKT LTQSDANNGG GFSIPRYCAE TIFPPLDYCI DPPVQTVLAK DVHGEVWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDA IVFLRIASGE LCVGVRRSMR GVSNGESSSW HSSISGVGDN GYALNSSIRS ENQGSPTTSS FARDRARVTA KSVLEAAALA VSGERFEVVY YPRASTAEFC VKAGLVKRAL EQSWYAGMRF KMAFETEDSS RISWFMGTIA AVQAADPVLW PSSPWRVLQV TWDEPDLLQG VNRVSPWQLE LVATLPMQLP PVSLPKKKLR TVQPQELPLQ // ID A9TTD3_PHYPA Unreviewed; 817 AA. AC A9TTD3; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ53308.1}; GN ORFNames=PHYPADRAFT_171843 {ECO:0000313|EMBL:EDQ53308.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ53308.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545202; EDQ53308.1; -; Genomic_DNA. DR RefSeq; XP_001781853.1; XM_001781801.1. DR UniGene; Ppa.2841; -. DR ProteinModelPortal; A9TTD3; -. DR GeneID; 5945059; -. DR KEGG; ppp:PHYPADRAFT_171843; -. DR InParanoid; A9TTD3; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 160 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 671 769 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 671 769 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 817 AA; 92404 MW; D51411A60854779B CRC64; MACKPVSNRK NQRLHTLFTI TKLVHEDVCV TEAEKRRWRW RWCGGEDNNA QQQSAENSWS ACLTGRMGKK AMRDATPPSV EFSRWSYSVS SSSFSVSSYC RDWPVFVPGD VAARSLLPGQ FDHMEKATSY NLQQREDAGL WKELLRTARQ GTTNKSFFVV DVVGSCLHTA MFCKLELPTV FLDHHIKSLK EKLTLQGPDG HRWPAMLGMT LDSKTCIMQG WQEVAADYNL EVKDQVVFFL LNDSHFMIQV FDDENNVKLR VLPSTDREAQ SNGDFSKARS KQLTRELAEK AKTDVRASAQ EEATKVESDR QLMKVDEDSA DLPLLRHSTV DGNEVLHIPD SSEDEEHVPS QHRNLDDGGK VNAVSPIATS VLKIRPEKNH TRCNSEVTKV DAEDRTGTTP EDMDLQILVP LREPAEMELR KNLRRISGVD DDDDNDNDVQ NERNSSIIEN LTGNQATRRS IPVSSEPSSS ELVITRSRSR KLQRKTGGYK DDNDLYTSST VRKLGCEEQV FNGEKADSGC NREKRLTQRR SLGMKKMLEM PPVRAVKEPS SNLDLGTSEV MLQENVESRV IHPAAPRTLR ELRRKTLAKS RNNGKVSEDS GEKKAANVDP PEDVVKPVYK RPKPMKIGGM APPKEPPILY ISKRRPVTDK ERQQALITAQ EFANMSKNKH YVMQLKKTQV YCGFHLKVPK EMVDALQLPL KTMELMLCDS TGRKWLVEWM GAHPKHPGIN SKGWTRFVLE HHLEEGDCCV FDLPDPWVSN ISVQIFPVVP LVESSENGWR DHYIFAQQGV QKEMGSPSGR SPAQNYASHA QAWANST // ID A9TTG0_PHYPA Unreviewed; 102 AA. AC A9TTG0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 37. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ53260.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_150354 {ECO:0000313|EMBL:EDQ53260.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ53260.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545203; EDQ53260.1; -; Genomic_DNA. DR RefSeq; XP_001781895.1; XM_001781843.1. DR GeneID; 5945135; -. DR KEGG; ppp:PHYPADRAFT_150354; -. DR InParanoid; A9TTG0; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}. FT DOMAIN 1 97 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT NON_TER 1 1 {ECO:0000313|EMBL:EDQ53260.1}. SQ SEQUENCE 102 AA; 11989 MW; F80C77E695C5E053 CRC64; LTVTDVGELG RIILPKRDAE CQLPHLDSKE GKLLTMEDYN SNKHWTLRYK WWPNNKSRMY VLESTGEFVK YYDLKEKDEL IVYKDGHGKL VSIVGITFVR IN // ID A9TTN3_PHYPA Unreviewed; 718 AA. AC A9TTN3; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 49. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ53188.1}; GN ORFNames=PHYPADRAFT_171881 {ECO:0000313|EMBL:EDQ53188.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ53188.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545205; EDQ53188.1; -; Genomic_DNA. DR RefSeq; XP_001781964.1; XM_001781912.1. DR UniGene; Ppa.9280; -. DR ProteinModelPortal; A9TTN3; -. DR STRING; 3218.PP1S316_8V6.1; -. DR PRIDE; A9TTN3; -. DR GeneID; 5945189; -. DR KEGG; ppp:PHYPADRAFT_171881; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd06257; DnaJ; 1. DR Gene3D; 1.10.287.110; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001623; DnaJ_domain. DR Pfam; PF02362; B3; 1. DR Pfam; PF00226; DnaJ; 1. DR PRINTS; PR00625; JDOMAIN. DR SMART; SM01019; B3; 1. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50076; DNAJ_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 31 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 591 663 J. {ECO:0000259|PROSITE:PS50076}. FT DNA_BIND 31 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 718 AA; 77838 MW; 761465DB420E1C0A CRC64; MKKQACADCL AHCERVHGRG GETSDAIPFL SPSFLRRIGL DSTECMPIPS SFVKANIKTL GTSLTIEGPS TDKWTVAVEG SFAKHNISLR LGWVNFVKDH HLQLGDQLLF TLKTDSYFQV EIFDESGCKK LSALDAVNSL KPIDSNVSNQ EPNRITSEFE AKPVDLEPDK MSRKAHGAGG SNRFQDASPP ARLSGRKQRG RSEVGKENTS SKKACIDPDS PESEGGNPIA AGDDDEVLKQ RGSRKVSRGK SRKSQDFYED VDEEDFTLFH KPRARNTPAR NYKASSSTAE ANGQDVKKSS SAAKEKQKAS VLCSVAAYSS VVKPRVALLH EKVGHGMMSP VAMLKATKLE AKMIEALPTI KLRIQVIGVA YHISPFCAQV ICFYKEVYGL ILLCGIPRKA LSSPGRGGAS CNIAGCVSVH HEKTQCCSIS VTRGGFNCLY LWRLELPERL SGDVVSGSVS DGISGAVDSA LLLRRSEQAY TRLMSEHILD GDVREFVICV RQKGSMNHEV LGDWLPVAEL ALVSDRDASA ALPVALPVLC REVAECAGKG APSLRTIPRN NLEYAYEPAE AFYEFVLGTG SSSQPLTNAE CPYSVLGLAK GASTSQVRTA YRTLAAKFHP DRQAAGEQET AEEEFKRVTR AYDQIKRTGL TNDGDIATYA SLGGTGRNSL SEPINMTSQN MQAKLPADIQ VAVRPLDSEI INRFLARSCA RQAATVGV // ID A9TVW0_PHYPA Unreviewed; 595 AA. AC A9TVW0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHYPADRAFT_108888 {ECO:0000313|EMBL:EDQ52456.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ52456.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545227; EDQ52456.1; -; Genomic_DNA. DR RefSeq; XP_001782750.1; XM_001782698.1. DR UniGene; Ppa.2724; -. DR ProteinModelPortal; A9TVW0; -. DR GeneID; 5945940; -. DR KEGG; ppp:PHYPADRAFT_108888; -. DR InParanoid; A9TVW0; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 518 595 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 595 AA; 63974 MW; 18F643BBA6662DF1 CRC64; MASGVGESVD RLDAQLWHAC AGGMVQLPQV GAKVIYFPQG HGEQAATTPD FSASMGPSGT IPCRVVSVNF LADTETDEVF ARMRLQPEGL HGLNDMTEEA PSSPPPEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPP LDYSSDPPVQ TVLAKDVHGD VWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDAIVFLR SASGELCVGV RRSMRGAMGD NGHGGSSNGV SRSGSQGAST TSSFARNRAR VTAKSVLDAA ALAVAGKPFE VVYYPRASTA EFCVKAGLVK QALDHTWYAG MRFKMAFETE DSSRISWFMG TIAAVKPADP LLWPNSPWRV TWDEPDLLQG VSRVSPWQVE LVATLPMQLP PFSYPKKKLR AVQPQELHFA GQLPTPWGGP ALLENASAGM QGARHDRFNG PPSMDFRGRL LPPVAHGCGL TMGLMPGGSP TRDDGGSNSK SKLKSSPAPT TFLLFGQSID PSSNSKAAQE QCVASASSSV EGYRQNEGGP WPELSIGTEH CKVFREGDEV GRTLDLANFK SYEEVYDRLA GMFSVPAASF KNRVVYQDGE GCTLPVGAEP YGNFVAAVRR LTILP // ID A9TWB4_PHYPA Unreviewed; 1183 AA. AC A9TWB4; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ52301.1}; GN ORFNames=PHYPADRAFT_98143 {ECO:0000313|EMBL:EDQ52301.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ52301.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545232; EDQ52301.1; -; Genomic_DNA. DR RefSeq; XP_001782901.1; XM_001782849.1. DR ProteinModelPortal; A9TWB4; -. DR EnsemblPlants; PP1S344_29V6.1; PP1S344_29V6.1; PP1S344_29V6. DR GeneID; 5946107; -. DR Gramene; PP1S344_29V6.1; PP1S344_29V6.1; PP1S344_29V6. DR KEGG; ppp:PHYPADRAFT_98143; -. DR InParanoid; A9TWB4; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 53 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 388 484 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 816 907 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 388 484 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 816 907 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1183 AA; 133920 MW; 4E79B1359A581632 CRC64; MDKIPHGFRP CLSCTRSCYQ EHWPLQSRDT FRSPCFMRAL CDSNLAAMAT CWMVIPSAWL KLHGDEVGNS AVLHGPSGNT WQVGVGRPKW VAFRVGWRTF AADNGLEKGD ILVFTLIGKS EFAVRIFDNK TGLEKESALT ATNTGCYDSK SPSSLGVKRK QRDDDENAAE LKRICAHNNG VQLVHNDQSI DSTHTEKVLQ QRRAKSSTFS SAAALISYGE CALLDLNSQP LYLHQNPTSG NGNFFPEIDH QLLDAVVART FQGYASGIVY QPHPISIRSQ DVGEECHVQG QSKAQVCGSG GLGPATRFAS QRRPVMDARE RSTEFPHRQN NSPTVIPSHH RSQILDLNKE HFSDDVVPHM LSPDVILERE KALELARRAQ ESIDRPSHLV VLRAFHVHGR AFVRFPVTFG KQHMPRKTVS MHLLDSHGHR WPMTWLRDNE THMGLTRGWR DFCLAEGLLE GDVCIFELIE LNKLTLLIHV FRSSETRDSN HVIITKPKRP ELLQMQHLSH KKCSDRKRKV VDKGDGRRQR KADSLADKDA LPTSSEGQYP CTPTKLALYK AFHRTTHTDS VGPSRVCNRR QDSFAAGSVG RERLKKLSLW ASKVQGGMYS SSKKISCESE SVAGTSLERC CKDDEELTDS VMSKTQDATF SEILCQMSSG CVGANNSRNC RNSPGWVRTS TLSTGLIEKD EKSSAVESRG FECQHFHEQD CTRKRHHINA ARRHEIRGGS GKLVSNTFKH WAKARKRCET YGKTEETRTW GWKWYTPDYS VLRRRMQVLN RNSRFYIASR RTPVTDAQKE AAKEAALAMK TENPATMVVL KSSNVYKTYI VEILPEFCRQ LSPNERVHIF LRDAAGNKTR VLLTQEALTK GWRQFSLEHL LEEGDVCVFE LIDTSRRTIL VHIFRVVDVD YINGNYRNHY RIISAGFQRT QRPLVKCGLK IQANGQVVNE VATKLSFQAR RNSVNRSLYL AILKTRDNLR KPRPVEDDNP YYTKEHMDLN LDLDTSTVPP PALNTLWDSP SCTMSTSCAS RSPVLKLYPE LDSALMITKN DSSQLCPMSD SLLRLPVVTP PSSGTALADI CEISSCKNRQ QQTMLYPEND TMVGMPLPLP PDEDDSEPEE GNYYRVVRIL KKRYFDNEKQ YLAELDGPVV QSDGCRGVRE YDDMKWWIPE KSFSPGFTSC YLR // ID A9U2C0_PHYPA Unreviewed; 229 AA. AC A9U2C0; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 41. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ50191.1}; DE Flags: Fragment; GN ORFNames=PHYPADRAFT_227676 {ECO:0000313|EMBL:EDQ50191.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ50191.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545318; EDQ50191.1; -; Genomic_DNA. DR RefSeq; XP_001785010.1; XM_001784958.1. DR GeneID; 5948205; -. DR KEGG; ppp:PHYPADRAFT_227676; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; A9U2C0; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 136 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 229 229 {ECO:0000313|EMBL:EDQ50191.1}. SQ SEQUENCE 229 AA; 26326 MW; CA1ECC7603EDE164 CRC64; MAVVVSGQLV PYEETRKRRV EENKRRMEEL GLFDFSNSFV KNQPMRRKSV RRKTLSPEEV ATEARRSPRF AGKPVVEHED VEIHKQRRGL SRSGLHARCG TVYRQLAGRR DVPESTRQAA LDAAEVVYKA LKNPGFVRGM LHSHTASGFW LGLPVSFCRE YLPHRDETIV LEDEKLLEWE CVYLAKKIGL SGGWRGFSID HSLVDGDACV FELVEPKRFK IHIFRCDNC // ID A9U2C1_PHYPA Unreviewed; 621 AA. AC A9U2C1; DT 05-FEB-2008, integrated into UniProtKB/TrEMBL. DT 05-FEB-2008, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EDQ50181.1}; GN ORFNames=PHYPADRAFT_100669 {ECO:0000313|EMBL:EDQ50181.1}; OS Physcomitrella patens subsp. patens (Moss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. OX NCBI_TaxID=3218 {ECO:0000313|Proteomes:UP000006727}; RN [1] {ECO:0000313|EMBL:EDQ50181.1, ECO:0000313|Proteomes:UP000006727} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Gransden 2004 {ECO:0000313|Proteomes:UP000006727}; RX PubMed=18079367; DOI=10.1126/science.1150646; RA Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., RA Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., RA Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., RA Kuroki Y., Toyoda A., Suzuki Y., Hashimoto S.-I., Yamaguchi K., RA Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., RA Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., RA Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., RA Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., RA Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., RA Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., RA Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., RA Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., RA Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., RA Boore J.L.; RT "The Physcomitrella genome reveals evolutionary insights into the RT conquest of land by plants."; RL Science 319:64-69(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DS545318; EDQ50181.1; -; Genomic_DNA. DR RefSeq; XP_001785000.1; XM_001784948.1. DR ProteinModelPortal; A9U2C1; -. DR STRING; 3218.PP1S434_19V6.1; -. DR GeneID; 5948217; -. DR KEGG; ppp:PHYPADRAFT_100669; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; A9U2C1; -. DR Proteomes; UP000006727; Partially assembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006727}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000006727}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 90 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 333 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 90 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 333 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 621 AA; 69262 MW; 94F39E8947C4EA53 CRC64; MYIHPFWRWT GGTFGGTAAA GSVFSRERHP PSICLQCMIA PASQVACSRS GSDVLKYKLH GDEDEDADRN KRMLDSSRGR KKDAASHLLP SFLKKMTEVA IKSKLQMPVS FVRNSVTRIG KTIILEGPST NKWSVEVWPG SVQKRSLEFR DGWQKFVKDH NLQIGDQLCF TLTSDSHFQV MVYDESGSQK ASAMDAINST VTIKHEPKHL SKVRSDVRTK GPEARLKQKV TKRIRIKSAV KPTVVVVHSS DSELGNSEPP EKDENLKEII SKEKIQDCPG MDGSLADPKP LLAPHILQGG HVVSQRRSVT PAEKERALNA ARDLADTLTN PKLVMVMTKA YVYKGFWMVL NKVFSNAHMP HESREVTLCN KAGHSWPVKW LFKTTTNSSG FSGGWRGFAL DNRLEESDVC VFEMVDEKYF VILVHLFRAI GQPSEDAGDY RPSPGRGRNA NRRKRKAIDS PLDTRCTKIK LFHSGDLKSP AGCSRAKYLY HTQSQEAENL AQMVGCSQKQ QKDTCTASHG KVLHQDEGKE VTSTAITSSC DTDFTSDNPS SEALETFERR TALQIRPLHA FQFPRRKTGS FRDYLMDLGK ELVGQQAAMA APKRSSPPAS RKTQISPSLE V // ID B4FB68_MAIZE Unreviewed; 503 AA. AC B4FB68; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 67. DE SubName: Full=B3 domain-containing protein REM16 {ECO:0000313|EMBL:AQK49580.1}; GN Name=100192062 {ECO:0000313|EnsemblPlants:Zm00001d049094_P001}; GN ORFNames=ZEAMMB73_Zm00001d049094 {ECO:0000313|EMBL:AQK49580.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF79361.1}; RN [1] {ECO:0000313|EMBL:ACF79361.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF79361.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK49580.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK49580.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d049094_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d049094_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT034356; ACF79361.1; -; mRNA. DR EMBL; BT061471; ACN26168.1; -; mRNA. DR EMBL; CM000780; AQK49580.1; -; Genomic_DNA. DR RefSeq; NP_001130957.1; NM_001137485.1. DR UniGene; Zm.118453; -. DR UniGene; Zm.162064; -. DR STRING; 4577.GRMZM2G001048_P01; -. DR EnsemblPlants; Zm00001d049094_T001; Zm00001d049094_P001; Zm00001d049094. DR GeneID; 100192062; -. DR Gramene; Zm00001d049094_T001; Zm00001d049094_P001; Zm00001d049094. DR KEGG; zma:100192062; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR HOGENOM; HOG000070541; -. DR OMA; DGRSKFS; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000007305; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 395 490 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 395 490 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 503 AA; 55395 MW; FBFA7F6817E7A550 CRC64; MRGRKRQQVS ASSAAALVKG RESTKQKEKE ARKEKEAREA GREPAAKERQ MRRKAGKEKE TETGGEGKEP AKEKEVREEG KENDKHKEKA KTKANVCPQF FKVFFPEQST ERLRIPPMFN QHLKEQQPTG AVSLRGPSGN RWQAALASES ESEAAWCFDQ GWKEFVTDHS LRLGHFLVFT RDGPAQFSVA VFSSSGVIDP AALDARPTAN GGAAVKLEDG EGVGVRGDVD AGGDTSSEVS LLPAEEGDGG ATGRRTGATS GGAGGASEMS LVLREEGRGV TGKRARATTS DLPADASAPK KHSALAKKAG KRRPQAATSK DVSMIVHNPT FSLLDESKTF NKTQIRDKNV PRSGKFLLRT TKAPVVISQR RRVTEEEKCL ALRKAMEFKS KHPFTMQIMI ESYVYVGFFM NIACEFVRES LPRTSKKMTL WDPMGKPWDV SYVYYGDRAA GSFGGGWGRF ALGNNLEKSD VCVFELFEED NMRVHIYRVV PEITPLLRAS NKD // ID B4FDE6_MAIZE Unreviewed; 146 AA. AC B4FDE6; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 54. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:ONL94340.1}; GN Name=100192994 {ECO:0000313|EnsemblPlants:Zm00001d027939_P003}; GN ORFNames=ZEAMMB73_Zm00001d027939 {ECO:0000313|EMBL:ONL94340.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF80139.1}; RN [1] {ECO:0000313|EMBL:ACF80139.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF80139.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ONL94340.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONL94340.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d027939_P003} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d027939_P003}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT035134; ACF80139.1; -; mRNA. DR EMBL; CM007647; ONL94340.1; -; Genomic_DNA. DR RefSeq; NP_001131637.1; NM_001138165.1. DR UniGene; Zm.18375; -. DR EnsemblPlants; Zm00001d027939_T003; Zm00001d027939_P003; Zm00001d027939. DR GeneID; 100192994; -. DR Gramene; Zm00001d027939_T003; Zm00001d027939_P003; Zm00001d027939. DR KEGG; zma:100192994; -. DR HOGENOM; HOG000239798; -. DR Proteomes; UP000007305; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16494 MW; 146A880D30F4477B CRC64; MTRSPRRPAD LIYLARRGSI SMKARLEATR KAEELESQLD PEIPSFVKAM LHSHVVRGFW LGLPSHFCDT YMPKQDATIT LVDEKDEEFD TNYLAYKKGL SGGWAGFALY HAIQDGDSTV FQLIKPTTFK VHIVRAATDD SSEVDE // ID B4FEK2_MAIZE Unreviewed; 307 AA. AC B4FEK2; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 28-JUL-2009, sequence version 2. DT 05-JUL-2017, entry version 62. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:AQK57470.1}; GN Name=100193310 {ECO:0000313|EnsemblPlants:Zm00001d052591_P001}; GN ORFNames=ZEAMMB73_Zm00001d052591 {ECO:0000313|EMBL:AQK57470.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF80545.2}; RN [1] {ECO:0000313|EMBL:ACF80545.2} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF80545.2}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK57470.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK57470.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d052591_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d052591_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT035540; ACF80545.2; -; mRNA. DR EMBL; CM000780; AQK57470.1; -; Genomic_DNA. DR RefSeq; NP_001131920.2; NM_001138448.2. DR UniGene; Zm.139775; -. DR UniGene; Zm.39365; -. DR EnsemblPlants; Zm00001d052591_T001; Zm00001d052591_P001; Zm00001d052591. DR GeneID; 100193310; -. DR Gramene; Zm00001d052591_T001; Zm00001d052591_P001; Zm00001d052591. DR KEGG; zma:100193310; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR OMA; QHAGESQ; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000007305; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 307 AA; 34543 MW; 738E8C0E38281B46 CRC64; MATNHLSQGQ HQHPQAWPWG VAMYTNLHYH HQQHHHYEKE HLFEKPLTPS DVGKLNRLVI PKQHAERYFP LSSSGAGDKG LILCFEDDDD DEAAAANKPW RFRYSYWTSS QSYVLTKGWS RYVKEKQLDA GDVVRFQRMR GFGMPDRLFI SHSRRGETTA TAATTVPPAA AAVRVVVAPA QSAGADHQQQ QQPSPWSPMC YSTSGSYSYP TSSPANSQHA YHRHSADHDH SNNMQHAGES QSDRDNRSCS AASAPPPPSR RLRLFGVNLD CGPGPEPETP TAMYGYMHQS PYAYNNWGSP YQHDEEI // ID B4FEU6_MAIZE Unreviewed; 190 AA. AC B4FEU6; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 65. DE SubName: Full=B3 DNA binding domain containing protein {ECO:0000313|EMBL:ACG43832.1}; DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:AQK79937.1}; GN Name=100193386 {ECO:0000313|EnsemblPlants:Zm00001d035921_P001}; GN ORFNames=ZEAMMB73_Zm00001d035921 {ECO:0000313|EMBL:AQK79937.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF80639.1}; RN [1] {ECO:0000313|EMBL:ACG43832.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4; RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., RA Tatarinova T.V., Zhang H., Swaller T.J., Lu Y.P., Bouck J., RA Flavell R.B., Feldmann K.A.; RT "Insights into corn genes derived from large-scale cDNA sequencing."; RL Plant Mol. Biol. 69:179-194(2009). RN [2] {ECO:0000313|EMBL:ACF80639.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF80639.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [3] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [4] {ECO:0000313|EMBL:AQK79937.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK79937.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EnsemblPlants:Zm00001d035921_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d035921_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT035634; ACF80639.1; -; mRNA. DR EMBL; EU971714; ACG43832.1; -; mRNA. DR EMBL; CM000782; AQK79937.1; -; Genomic_DNA. DR EMBL; CM000782; AQK79940.1; -; Genomic_DNA. DR RefSeq; NP_001131987.1; NM_001138515.1. DR RefSeq; XP_008647376.1; XM_008649154.1. DR RefSeq; XP_008647377.1; XM_008649155.1. DR UniGene; Zm.124020; -. DR EnsemblPlants; Zm00001d035921_T001; Zm00001d035921_P001; Zm00001d035921. DR EnsemblPlants; Zm00001d035921_T003; Zm00001d035921_P003; Zm00001d035921. DR GeneID; 100193386; -. DR Gramene; Zm00001d035921_T001; Zm00001d035921_P001; Zm00001d035921. DR Gramene; Zm00001d035921_T003; Zm00001d035921_P003; Zm00001d035921. DR KEGG; zma:100193386; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR HOGENOM; HOG000240752; -. DR OMA; RLDQGWA; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000007305; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 78 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 78 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 190 AA; 21136 MW; E22579D9487FD969 CRC64; MEVRGSAPSM KPKVEPPLEA SHDWEVTPLS GDNPFFTSVM RKSQVQNPFQ LVHIFFSFLF PQSGTHARRS TPYCLFQVIP VRFHRHLPEA RAPAVLLCRD RSWTVSYAGV GKWKRLQGAW RDFARDNGLR LGDACVFELL VPSTDATQGD GDGSKDQGEV VFRVQVLRGG LPAEITSRGA TSDDPLVIVD // ID B4FGA0_MAIZE Unreviewed; 365 AA. AC B4FGA0; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 56. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:ONM01706.1}; GN Name=100193780 {ECO:0000313|EnsemblPlants:Zm00001d030907_P001}; GN ORFNames=ZEAMMB73_Zm00001d030907 {ECO:0000313|EMBL:ONM01706.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF81143.1}; RN [1] {ECO:0000313|EMBL:ACF81143.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF81143.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ONM01706.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM01706.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d030907_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d030907_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT036138; ACF81143.1; -; mRNA. DR EMBL; CM007647; ONM01706.1; -; Genomic_DNA. DR RefSeq; NP_001132338.1; NM_001138866.1. DR UniGene; Zm.34400; -. DR EnsemblPlants; Zm00001d030907_T001; Zm00001d030907_P001; Zm00001d030907. DR GeneID; 100193780; -. DR Gramene; Zm00001d030907_T001; Zm00001d030907_P001; Zm00001d030907. DR KEGG; zma:100193780; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000244154; -. DR OMA; NFKGQIT; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000007305; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 259 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 259 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 41726 MW; 2B9BF8594D0E10EE CRC64; MQQEHAQPSM VGAKGCERCR DWQEHYYWEH MDASKIRFFR CMTGDFAHRI SVPEKFAKNF KGQITEEFHL KSPSSAETWH VGVEKHGDKL FLVSGWENFA KAHELEENDL LLFACSGNSS FEVLVFGASG CEKVSSLFGS GLGPDMGKQF NDVVRRHGVH HSVTVSDSED TVAPSQLVRS PRNALPLKEP SGKARPSKYE SPNSSNFIVR HVATGKEGTD DEYANSNYYY SLSANRLGDE EKEEIIGLAP IRPNNPVFVT LLRKNHVQRR NNCLIIPSKF AADHLGERAH NIILRRPNRK EKWHVSYYHS RHTRCFQNLA LFKFTRENKL HEGDICVFEL MKGERRVTMT VHVVRKANGR FILVV // ID B4FK06_MAIZE Unreviewed; 251 AA. AC B4FK06; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 07-JUN-2017, entry version 61. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB04371.1}; GN Name=ABI14 {ECO:0000313|EMBL:AIB04371.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF82449.1}; RN [1] {ECO:0000313|EMBL:ACF82449.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF82449.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:AIB04371.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT037444; ACF82449.1; -; mRNA. DR EMBL; KJ726880; AIB04371.1; -; mRNA. DR RefSeq; NP_001136712.1; NM_001143240.1. DR RefSeq; XP_008676667.1; XM_008678445.1. DR UniGene; Zm.72964; -. DR GeneID; 100216848; -. DR KEGG; zma:100216848; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 153 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 251 251 {ECO:0000313|EMBL:AIB04371.1}. SQ SEQUENCE 251 AA; 28822 MW; CDBBDC2E408F5DEF CRC64; MISHTAAITI YTKTGERREM AEATPYEEQR RRQVEANKRK LEELQLHHLS AAIREAAAAA KPSLVKKRKA RVPLDVADAV MEPVRRSGRL ANLPDKPVYR EKVPDFGMKI RRTYGSVRRD LTNRVYATDD ARSYAISKAE DLEQELDSSF PIFIKPMTQS HVTGGFWLGL PIHFCRKYLP KRDEMITLVD EDDDESDTLY LAMKRGLSAG WRGFAVQQKL VDGDCLVFQL IEQTKFKVYI TRASSYYESE D // ID B4FP29_MAIZE Unreviewed; 373 AA. AC B4FP29; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 57. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100272511 {ECO:0000313|EnsemblPlants:Zm00001d014013_P001}; GN ORFNames=ZEAMMB73_Zm00001d014013 {ECO:0000313|EMBL:AQK65038.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF83872.1}; RN [1] {ECO:0000313|EMBL:ACF83872.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF83872.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK65038.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK65038.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d014013_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d014013_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT038867; ACF83872.1; -; mRNA. DR EMBL; CM000781; AQK65038.1; -; Genomic_DNA. DR EMBL; CM000781; AQK65039.1; -; Genomic_DNA. DR EMBL; CM000781; AQK65040.1; -; Genomic_DNA. DR RefSeq; NP_001335723.1; NM_001348794.1. DR UniGene; Zm.83414; -. DR EnsemblPlants; Zm00001d014013_T001; Zm00001d014013_P001; Zm00001d014013. DR EnsemblPlants; Zm00001d014013_T003; Zm00001d014013_P003; Zm00001d014013. DR EnsemblPlants; Zm00001d014013_T004; Zm00001d014013_P004; Zm00001d014013. DR GeneID; 100272511; -. DR Gramene; Zm00001d014013_T001; Zm00001d014013_P001; Zm00001d014013. DR Gramene; Zm00001d014013_T003; Zm00001d014013_P003; Zm00001d014013. DR Gramene; Zm00001d014013_T004; Zm00001d014013_P004; Zm00001d014013. DR KEGG; zma:100272511; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR Proteomes; UP000007305; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 41017 MW; D56FDDDB44EE4A79 CRC64; MKEAGEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGGAT DLAGARARPL PPLVLCTVAG VRFLADPETD EVFAKIRLVP AAPGEVEFGE PREFGIDPED AREKLSSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIFRGTPRR HLLTTGWSAF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVSCGGMECI SGWNAPVYGA LSAFLKDEEG KITKGPGGYM RGRGKVEITD VVEAASLAAS GQPFEVVYYP RASTPEFVVK AASVQNAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASA QVADTIRWPN SPWRLLQVLL HPMFPIPICH TSL // ID B4FPB4_MAIZE Unreviewed; 369 AA. AC B4FPB4; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 57. DE SubName: Full=B3 domain-containing transcription factor LEC2 {ECO:0000313|EMBL:AQK57947.1}; GN Name=100272565 {ECO:0000313|EnsemblPlants:Zm00001d052750_P001}; GN ORFNames=ZEAMMB73_Zm00001d052750 {ECO:0000313|EMBL:AQK57947.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF83957.1}; RN [1] {ECO:0000313|EMBL:ACF83957.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF83957.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK57947.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK57947.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d052750_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d052750_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT038952; ACF83957.1; -; mRNA. DR EMBL; CM000780; AQK57947.1; -; Genomic_DNA. DR RefSeq; NP_001140504.1; NM_001147032.1. DR UniGene; Zm.80702; -. DR STRING; 4577.GRMZM2G125596_P01; -. DR EnsemblPlants; Zm00001d052750_T001; Zm00001d052750_P001; Zm00001d052750. DR GeneID; 100272565; -. DR Gramene; Zm00001d052750_T001; Zm00001d052750_P001; Zm00001d052750. DR KEGG; zma:100272565; -. DR eggNOG; ENOG410JDZ5; Eukaryota. DR eggNOG; ENOG41116M3; LUCA. DR HOGENOM; HOG000070867; -. DR OMA; KFIIRGE; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000007305; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 262 362 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 369 AA; 40030 MW; 4ACDA61BFEFC001A CRC64; MGQMGGPDGD GDGGAGPHHQ YHYQALLAAV QNPSQGLHPF PLPFHVPLHA GAGAPAAGPG PGADADASTH NANAAHHSQP PRGFTDWSAS NSAFAAVASQ PAPATTNTPF HYNLSQSYAL WTHYMLNKNV SYSTYPTPHE EHPHPLRHTH IQENPHPLRH THIPDKDSGC ASSLGFDSFT TMSLGPNICS HMTPMEGSIS AKEPENSEDL PAIVRSSDEM DTRNSGKVHR DTVGTLPESK QSHESCASVN NKFNSGEYQV ILRKELTKSD VANSGRIVLP KKDAEAGLPP LVQGDPLILQ MDDMVLPIIW KFKYRFWPNN KSRMYILEAA GEFVKTHGLQ AGDALIIYKN SVPGKFIIRG EKSIQQTNP // ID B4FSX9_MAIZE Unreviewed; 278 AA. AC B4FSX9; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 63. DE SubName: Full=Putative B3 domain-containing protein {ECO:0000313|EMBL:AQK86779.1}; GN Name=100273110 {ECO:0000313|EnsemblPlants:Zm00001d038504_P002}; GN ORFNames=ZEAMMB73_Zm00001d038504 {ECO:0000313|EMBL:AQK86779.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF85222.1}; RN [1] {ECO:0000313|EMBL:ACF85222.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF85222.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK86779.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK86779.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d038504_P002} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d038504_P002}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT040217; ACF85222.1; -; mRNA. DR EMBL; CM000782; AQK86779.1; -; Genomic_DNA. DR RefSeq; NP_001141031.1; NM_001147559.1. DR UniGene; Zm.26440; -. DR EnsemblPlants; Zm00001d038504_T002; Zm00001d038504_P002; Zm00001d038504. DR GeneID; 100273110; -. DR Gramene; Zm00001d038504_T002; Zm00001d038504_P002; Zm00001d038504. DR KEGG; zma:100273110; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR HOGENOM; HOG000239798; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000007305; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31472 MW; 0C9BEBFF2ABD39BA CRC64; MAAKASRAAA SGAAYEEQRK KRVLENLKHL EDLGIAEMSK SLLQAARLQK LNKAGVRAGP KERKKFDATE VRRSSRAKTT VSYKDDFGEL DAFLRGTRRS GGRNTEHGRE YTGRIPSYEQ QQRAFRKAEK LQDSLDPNNP SFVKTMVRSH VSSCFWLGLP ISFCKNNLPS KEFRMVLEDE EGLEFDAVYI GNRTGLSGGW RGFAMHHNLE EGDSLVFELA EHDKFKIYII KAIDDDVKEA EPDDKNDNGV TKEEPDQEES PVAEPPKGAK RRKLRGRR // ID B4FXE4_MAIZE Unreviewed; 253 AA. AC B4FXE4; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 56. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:ONM40958.1}; GN Name=100273773 {ECO:0000313|EnsemblPlants:Zm00001d044355_P001}; GN ORFNames=ZEAMMB73_Zm00001d044355 {ECO:0000313|EMBL:ONM40958.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF86787.1}; RN [1] {ECO:0000313|EMBL:ACF86787.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF86787.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ONM40958.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM40958.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d044355_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d044355_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT041782; ACF86787.1; -; mRNA. DR EMBL; CM007649; ONM40958.1; -; Genomic_DNA. DR EMBL; CM007649; ONM40962.1; -; Genomic_DNA. DR RefSeq; NP_001141649.1; NM_001148177.1. DR RefSeq; XP_008672457.1; XM_008674235.1. DR RefSeq; XP_008672458.1; XM_008674236.1. DR UniGene; Zm.85228; -. DR EnsemblPlants; Zm00001d044355_T001; Zm00001d044355_P001; Zm00001d044355. DR EnsemblPlants; Zm00001d044355_T005; Zm00001d044355_P005; Zm00001d044355. DR GeneID; 100273773; -. DR Gramene; Zm00001d044355_T001; Zm00001d044355_P001; Zm00001d044355. DR Gramene; Zm00001d044355_T005; Zm00001d044355_P005; Zm00001d044355. DR KEGG; zma:100273773; -. DR eggNOG; ENOG410JUQU; Eukaryota. DR eggNOG; ENOG41106N3; LUCA. DR HOGENOM; HOG000239798; -. DR OMA; HIFRQSS; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000007305; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 155 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 253 AA; 28847 MW; 3ACD2591F1E53044 CRC64; MAEAVAVAYE EQRRRQIEMN KRKLEELQLH HLSAAVREAA AAAKPSSAKK RKAPVPRDAA TEPPRRSDRL ANLPEKPMYR EVRVNLPFPE GSKSNARVPL DAANSVVVEP LRWSDRLANL PKKPMYHEDS DEERSYAISK AEELVQELGS SFPIFTQPMT LSHVSGGFWL GLPKHFCREH LPKSDETITL VDEEDDESDT FYLAMQAGLS TGWKEFAIQH KLLDGDCLVF QLIERTKFKV YIIRATLYFE SDH // ID B4FXX4_MAIZE Unreviewed; 406 AA. AC B4FXX4; DT 23-SEP-2008, integrated into UniProtKB/TrEMBL. DT 23-SEP-2008, sequence version 1. DT 05-JUL-2017, entry version 70. DE SubName: Full=AP2/ERF and B3 domain-containing transcription repressor TEM1 {ECO:0000313|EMBL:AQK88209.1}; GN Name=100273875 {ECO:0000313|EnsemblPlants:Zm00001d038907_P001}; GN ORFNames=ZEAMMB73_Zm00001d038907 {ECO:0000313|EMBL:AQK88209.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF86967.1}; RN [1] {ECO:0000313|EMBL:ACF86967.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACF86967.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK88209.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK88209.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d038907_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d038907_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT041962; ACF86967.1; -; mRNA. DR EMBL; CM000782; AQK88209.1; -; Genomic_DNA. DR RefSeq; NP_001141742.1; NM_001148270.2. DR UniGene; Zm.31358; -. DR STRING; 4577.GRMZM2G059939_P02; -. DR EnsemblPlants; Zm00001d038907_T001; Zm00001d038907_P001; Zm00001d038907. DR GeneID; 100273875; -. DR Gramene; Zm00001d038907_T001; Zm00001d038907_P001; Zm00001d038907. DR KEGG; zma:100273875; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR KO; K09287; -. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007305; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 128 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 206 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 128 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 206 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 42894 MW; 3ED2DB56D51B693D CRC64; MDSTSCLVDD ASSGASTGKK PAPAPAAATG KPLQRVGSGT SAVMDAAEPG AEADSGGAGR APGGVSGKLP SSKYKGVVPQ PNGRWGAQIY ERHQRVWLGT FTGEAEAARA YDVAAQRFRG RDAVTNFRPL AESEPEAAVE LRFLASRSKA EVVDMLRKHT YGEELAHNRR AFAAASPAAS PPPENNRRPP AASSSSSPAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPAAA AAGVGSGGEC KGVLLNFEDA AGKAWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG FYRSAGGKQQ LFIDCKLRPN KTTTTAAAFV NVNAMTTTAA PPLAAVKAVR LFGVDLLTTP RPAAVAPEQE EVTVANKRAR DAMATAASTP APVHMVFKKQ CIDFAR // ID B6SN49_MAIZE Unreviewed; 159 AA. AC B6SN49; DT 16-DEC-2008, integrated into UniProtKB/TrEMBL. DT 16-DEC-2008, sequence version 1. DT 05-JUL-2017, entry version 62. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:AQK43235.1}; GN Name=100275071 {ECO:0000313|EnsemblPlants:Zm00001d025233_P001}; GN ORFNames=ZEAMMB73_Zm00001d025233 {ECO:0000313|EMBL:AQK43235.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACG26282.1}; RN [1] {ECO:0000313|EMBL:ACG26282.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4; RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., RA Tatarinova T.V., Zhang H., Swaller T.J., Lu Y.P., Bouck J., RA Flavell R.B., Feldmann K.A.; RT "Insights into corn genes derived from large-scale cDNA sequencing."; RL Plant Mol. Biol. 69:179-194(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK43235.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK43235.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d025233_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025233_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EU954164; ACG26282.1; -; mRNA. DR EMBL; CM000786; AQK43235.1; -; Genomic_DNA. DR RefSeq; NP_001142732.1; NM_001149260.1. DR UniGene; Zm.23280; -. DR STRING; 4577.GRMZM2G126194_P01; -. DR EnsemblPlants; Zm00001d025233_T001; Zm00001d025233_P001; Zm00001d025233. DR GeneID; 100275071; -. DR Gramene; Zm00001d025233_T001; Zm00001d025233_P001; Zm00001d025233. DR KEGG; zma:100275071; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR HOGENOM; HOG000240752; -. DR OMA; NDEYWPL; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 159 AA; 17317 MW; 9D466F5923068925 CRC64; MSRCKPVGGE SPAADGPDPR RPMSETPCSV QPGVVPLLGK PYFTCILCKS HVNQPFQVVV PKSLAPFLPG TTVPATVTWH GRSWEMRFTG GRQIQRLEAG WRGFALDNGL KLGDGCVFEL VDGRAERVVF RVQVLRADIP AEIRERAGGY TSSSPILID // ID B6TEP4_MAIZE Unreviewed; 462 AA. AC B6TEP4; DT 16-DEC-2008, integrated into UniProtKB/TrEMBL. DT 16-DEC-2008, sequence version 1. DT 05-JUL-2017, entry version 65. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF31 {ECO:0000313|EMBL:ADG43165.1}; GN Synonyms=100283112 {ECO:0000313|EnsemblPlants:Zm00001d026687_P001}; GN ORFNames=ZEAMMB73_Zm00001d026687 {ECO:0000313|EMBL:AQK47452.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACG35577.1}; RN [1] {ECO:0000313|EMBL:ACG35577.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4; RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., RA Tatarinova T.V., Zhang H., Swaller T.J., Lu Y.P., Bouck J., RA Flavell R.B., Feldmann K.A.; RT "Insights into corn genes derived from large-scale cDNA sequencing."; RL Plant Mol. Biol. 69:179-194(2009). RN [2] {ECO:0000313|EMBL:ACN34747.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN34747.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [3] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [4] {ECO:0000313|EMBL:ADG43165.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EMBL:AIB05433.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [6] {ECO:0000313|EMBL:AQK47452.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK47452.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [7] {ECO:0000313|EnsemblPlants:Zm00001d026687_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d026687_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EU963459; ACG35577.1; -; mRNA. DR EMBL; BT067850; ACN34747.1; -; mRNA. DR EMBL; HM004546; ADG43165.1; -; Genomic_DNA. DR EMBL; KJ727942; AIB05433.1; -; mRNA. DR EMBL; CM000786; AQK47452.1; -; Genomic_DNA. DR RefSeq; NP_001149486.1; NM_001156014.1. DR UniGene; Zm.43180; -. DR EnsemblPlants; Zm00001d026687_T001; Zm00001d026687_P001; Zm00001d026687. DR GeneID; 100283112; -. DR Gramene; Zm00001d026687_T001; Zm00001d026687_P001; Zm00001d026687. DR KEGG; zma:100283112; -. DR HOGENOM; HOG000241141; -. DR OMA; FMRRTAN; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 155 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 462 462 {ECO:0000313|EMBL:AIB05433.1}. SQ SEQUENCE 462 AA; 50564 MW; F5CC8BFC922738BA CRC64; MEPQPPLPLA NGHGNSIVDR DVWLACAAPL SRLPTVGDDV YYFPDGHAEQ CPAHLPAPLP APHFFPCTVT DISLGADDKT DEVFAKISLR PGLAAASRPD PGSSNSPPRE PLSYSIKELS QSDANGGGSF CVPRYCGDHV WPKVDFEADP PMQNLVMHDT TGKQWEFRHV YRAKQPRHVL TTGWSKFVNA KLLVAGDIIV FMRRPNGDLI VGLRRMPRYA GTLHRPGTGG DAQDPDQPPP PPPRNALARV PPKDVMEAAR LAAEGRPFTV TYYPRKAAGE FVVPRNEVEG VLDTLWEPGS HVLMQFAEAE DTRRTMWADG HVKAIHQKIW RALEIDWDVA SSAISAQLGR FVNAWQVQRI AYPSICGGLG DLCYPLPLME SESQVMAMIL EQMPPRTSAS PPNNPPRPGP GQKVNTIMLF GATIHVVQSD TDDDGYEQLN RDPPPNAAGG GDDMDHDSAE NI // ID B6TUV1_MAIZE Unreviewed; 164 AA. AC B6TUV1; DT 16-DEC-2008, integrated into UniProtKB/TrEMBL. DT 16-DEC-2008, sequence version 1. DT 05-JUL-2017, entry version 55. DE SubName: Full=B3 DNA binding domain containing protein {ECO:0000313|EMBL:ACG40884.1}; DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:AQK79936.1}; DE SubName: Full=Pentatricopeptide repeat-containing protein chloroplastic {ECO:0000313|EMBL:AQK79944.1}; GN Name=100193386 {ECO:0000313|EnsemblPlants:Zm00001d035921_P002}; GN ORFNames=ZEAMMB73_Zm00001d035921 {ECO:0000313|EMBL:AQK79936.1}, GN ZEAMMB73_Zm00001d035922 {ECO:0000313|EMBL:AQK79944.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACG40884.1}; RN [1] {ECO:0000313|EMBL:ACG40884.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4; RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., RA Tatarinova T.V., Zhang H., Swaller T.J., Lu Y.P., Bouck J., RA Flavell R.B., Feldmann K.A.; RT "Insights into corn genes derived from large-scale cDNA sequencing."; RL Plant Mol. Biol. 69:179-194(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK79936.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK79936.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d035921_P002} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d035921_P002}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EU968766; ACG40884.1; -; mRNA. DR EMBL; CM000782; AQK79936.1; -; Genomic_DNA. DR EMBL; CM000782; AQK79938.1; -; Genomic_DNA. DR EMBL; CM000782; AQK79939.1; -; Genomic_DNA. DR EMBL; CM000782; AQK79944.1; -; Genomic_DNA. DR EMBL; CM000782; AQK79951.1; -; Genomic_DNA. DR RefSeq; XP_008647378.1; XM_008649156.1. DR RefSeq; XP_008647379.1; XM_008649157.1. DR UniGene; Zm.124020; -. DR EnsemblPlants; Zm00001d035921_T002; Zm00001d035921_P002; Zm00001d035921. DR EnsemblPlants; Zm00001d035921_T004; Zm00001d035921_P004; Zm00001d035921. DR EnsemblPlants; Zm00001d035921_T005; Zm00001d035921_P005; Zm00001d035921. DR EnsemblPlants; Zm00001d035922_T002; Zm00001d035922_P002; Zm00001d035922. DR EnsemblPlants; Zm00001d035922_T003; Zm00001d035922_P003; Zm00001d035922. DR Gramene; Zm00001d035921_T002; Zm00001d035921_P002; Zm00001d035921. DR Gramene; Zm00001d035921_T004; Zm00001d035921_P004; Zm00001d035921. DR Gramene; Zm00001d035921_T005; Zm00001d035921_P005; Zm00001d035921. DR Gramene; Zm00001d035922_T002; Zm00001d035922_P002; Zm00001d035922. DR Gramene; Zm00001d035922_T003; Zm00001d035922_P003; Zm00001d035922. DR HOGENOM; HOG000240752; -. DR Proteomes; UP000007305; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 164 AA; 18066 MW; C5159E3E55761C9B CRC64; MEVRGSAPSM KPKVEPPLEA SHDWEVTPLS GDNPFFTSVM RKSQVQNPFQ LVIPVRFHRH LPEARAPAVL LCRDRSWTVS YAGVGKWKRL QGAWRDFARD NGLRLGDACV FELLVPSTDA TQGDGDGSKD QGEVVFRVQV LRGGLPAEIT SRGATSDDPL VIVD // ID Y3643_ORYSJ Reviewed; 91 AA. AC B7EIH2; Q0DUW2; Q8S5U1; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 10-FEB-2009, sequence version 1. DT 15-FEB-2017, entry version 48. DE RecName: Full=B3 domain-containing protein Os03g0164300; GN OrderedLocusNames=Os03g0164300, LOC_Os03g06850; GN ORFNames=OJ1123F12.9, OsJ_09529; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAM15786.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=ABF94140.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAF10976.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC104428; AAM15786.1; ALT_SEQ; Genomic_DNA. DR EMBL; DP000009; ABF94140.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP008209; BAF10976.1; ALT_INIT; Genomic_DNA. DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000140; EEE58377.1; -; Genomic_DNA. DR EMBL; AK070845; BAG92169.1; -; mRNA. DR PaxDb; B7EIH2; -. DR InParanoid; B7EIH2; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 91 B3 domain-containing protein FT Os03g0164300. FT /FTId=PRO_0000378053. FT DNA_BIND 1 91 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 91 AA; 10439 MW; BED07AEB13A0EA49 CRC64; MTNAKMTFAV QFSERYINKY IGSPIDDLMV SMAGTTQSYQ MRLKRSKDSR AMLTTGWNQL IDAKAFDEGD VCLFHFKEVD DVLVLKVHVL K // ID B8A0C3_MAIZE Unreviewed; 888 AA. AC B8A0C3; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 63. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100279854 {ECO:0000313|EnsemblPlants:Zm00001d041497_P001}; GN ORFNames=ZEAMMB73_Zm00001d041497 {ECO:0000313|EMBL:ONM33131.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACL53622.1}; RN [1] {ECO:0000313|EMBL:ACL53622.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACL53622.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ONM33131.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM33131.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d041497_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d041497_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT055015; ACL53622.1; -; mRNA. DR EMBL; CM007649; ONM33131.1; -; Genomic_DNA. DR EMBL; CM007649; ONM33135.1; -; Genomic_DNA. DR EMBL; CM007649; ONM33138.1; -; Genomic_DNA. DR EMBL; CM007649; ONM33140.1; -; Genomic_DNA. DR EMBL; CM007649; ONM33144.1; -; Genomic_DNA. DR RefSeq; NP_001146279.1; NM_001152807.1. DR UniGene; Zm.79067; -. DR STRING; 4577.GRMZM2G073750_P01; -. DR EnsemblPlants; Zm00001d041497_T001; Zm00001d041497_P001; Zm00001d041497. DR EnsemblPlants; Zm00001d041497_T005; Zm00001d041497_P005; Zm00001d041497. DR EnsemblPlants; Zm00001d041497_T017; Zm00001d041497_P017; Zm00001d041497. DR EnsemblPlants; Zm00001d041497_T023; Zm00001d041497_P023; Zm00001d041497. DR EnsemblPlants; Zm00001d041497_T032; Zm00001d041497_P032; Zm00001d041497. DR GeneID; 100279854; -. DR Gramene; Zm00001d041497_T001; Zm00001d041497_P001; Zm00001d041497. DR Gramene; Zm00001d041497_T005; Zm00001d041497_P005; Zm00001d041497. DR Gramene; Zm00001d041497_T017; Zm00001d041497_P017; Zm00001d041497. DR Gramene; Zm00001d041497_T023; Zm00001d041497_P023; Zm00001d041497. DR Gramene; Zm00001d041497_T032; Zm00001d041497_P032; Zm00001d041497. DR KEGG; zma:100279854; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; CENLPQR; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007305; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 755 839 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 888 AA; 97845 MW; 9EB639247DCD1DC6 CRC64; MNLSPPRMSE PSLESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETGEVYAQMT LQPLSPEEQK EPFLPIELGA GSNQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQHPPVQELV ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITC ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP LMAFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGLGA SPWLQPRIDY PLLGLKLDTY QQMAAAALEE IRAGDHLKQI SSLLPVQQPQ NLSGGLDPLY GNPVLQQMQF QSQQSSLQVV QQGYGPNASD SGFLQNQLQL QKQQEPLPQQ QQQALQQQSH QEMQHHLSAS CHDIANVASG VSESGSASQT ESSLLSGSSY QQIYDGNSGP GLHLHNGFHN CSSQESSNLL NLSRSGQFMA SEGWPLKRLA VESLSGHELQ PVQHKFEKVN HQSNVSHISS TLPPLSARDS YSAQASGTND QSHLLSSSFA IHDGLTAVRS GGVGSGTDAI TIASLRYNDM NLLPENPIAT SSCLGESGTF NSLDDVCGVN PSQGGTFVKV YKSGSPGRSL DITRFSSYYE LRSELERLFG LEGQLEDPVR SGWQLVFVDR ENDILLVGDD PWQEFVNSVW CIKILSPQDV QQMVRGGGDL LSTTGVRTLQ GSVCDDYSAG HDMQNLTGSI APVVPLDY // ID B8A784_ORYSI Unreviewed; 714 AA. AC B8A784; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_03213 {ECO:0000313|EMBL:EEC71245.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC71245.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC71245.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EEC71245.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA001046-PA; -. DR EnsemblPlants; BGIOSGA001046-TA; BGIOSGA001046-PA; BGIOSGA001046. DR Gramene; BGIOSGA001046-TA; BGIOSGA001046-PA; BGIOSGA001046. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; READPMW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 714 AA; 78248 MW; A88873EFF78F315B CRC64; MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY LPQGHLEHLG AAPGPAAVAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM REGEDGEGED AVKRPARIPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSLQRPSQ ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSGFINKKKL VSGDAVLFLR GEDGELRLGV RRAAQLKNVS PFPALHNQIS STSSLSEVAH AVAVKSIFHI YYNPRLSQSE FIIPYWKFMR SFSQPFSVGM RFKLRYESED ASERRRTGII IGSREADPMW HGSKWKCLVV KWDDDVECRR PNGVSPWEIE LSGSVSGSHL STPHSKRLKS CFPQVNPDIV LPNGSVSSDF AESARFHKVL QGQELLGLKT RDGTVNTASQ ATEARNFQYT DERSCSINMS NNILGVPRLG VKTPSGNPGF SYHCSGFGES QRFQEVLQGQ EVFRPYRGGT LSDACIRGSG FRPPDGNHAS GAAFKWLAPQ GCDHHGITTS VLPQASSPSS VLMFPQTSSK MPGLEYIYGC LDRNENSRHF KIGPTQDMAR TDQTLRLWPH LISGKVLDEC TRNEKLHSPV GGAEHESNTN KCLNTNGCKI FGISLTEKAQ AGDEVDCGNA SYHSRLQSLK PQMPKSLGSS CATVHEQRPV VGRVVDISAV NTMI // ID B8A8I4_ORYSI Unreviewed; 803 AA. AC B8A8I4; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 53. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_05027 {ECO:0000313|EMBL:EEC72083.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC72083.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC72083.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EEC72083.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA005099-TA; BGIOSGA005099-PA; BGIOSGA005099. DR Gramene; BGIOSGA005099-TA; BGIOSGA005099-PA; BGIOSGA005099. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 687 780 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 803 AA; 90387 MW; 44A2B2B50248BE23 CRC64; MAPPPPPQGS STGDPLYDEL WHACAGPLVT VPRVGDLVFY FPQGHIEQVE ASMNQVADSQ MRLYDLPSKL LCRVLNVELK AEQDTDEVYA QVMLMPEPEQ NEMAVEKTTP TSGPVQARPP VRSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMTQSPP TQELVAKDLH SMDWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQLS NVPSSVISSQ SMHLGVLATA WHAINTKSMF TVYYKPRTSP SEFIIPYDQY MESVKNNYSV GMRFRMRFEG EEAPEQRFTG TIIGSENLDP VWPESSWRSL KVRWDEPSTI PRPDRVSPWK IEPASSPPVN PLPLSRVKRP RPNAPPASPE SPILTKEAAT KVDTDPAQAQ RSQNSTVLQG QEQMTLRSNL TESNDSDVTA HKPMMWSPSP NAAKAHPLTF QQRPPMDNWM QLGRRETDFK DVRSGSQSFG DSPGFFMQNF DEAPNRLTSF KNQFQDQGSA RHFSDPYYYV SPQPSLTVES STQMHTDSKE LHFWNGQSTV YGNSRDRPQN FRFEQNSSSW LNQSFARPEQ PRVIRPHASI APVELEKTEG SGFKIFGFKV DTTNAPNNHL SSPMAATHEP MLQTPSSLNQ LQPVQTDCIP EVSVSTAGTA TENEKSGQQA QQSSKDVQSK TQVASTRSCT KVHKQGVALG RSVDLSKFSN YDELKAELDK MFEFDGELVS SNKNWQIVYT DNEGDMMLVG DDPWEEFCSI VRKIYIYTKE EVQKMNSKSN APRKDDSSEN EKGHLPMPNK SDN // ID B8A925_ORYSI Unreviewed; 401 AA. AC B8A925; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 49. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC71407.1}; GN ORFNames=OsI_03573 {ECO:0000313|EMBL:EEC71407.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC71407.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC71407.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EEC71407.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA004373-TA; BGIOSGA004373-PA; BGIOSGA004373. DR Gramene; BGIOSGA004373-TA; BGIOSGA004373-PA; BGIOSGA004373. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 380 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 380 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 44655 MW; 795358D060C44804 CRC64; MPGAGGKKSP WASGERRPHF FKVLVGDFKQ RLKIPPNFCK HIPWEESRKA KGLKEASMAA TLEGPSGRTW LVVIRRTAEG TFFTSGWPKF VQDQALRELE FVVFRYDGNT RFTAMVFDRT ACEREDLMGG GGGDRPRKKR GRPRTAAASR DAARPKKDSV GKEMVTYRAS PSGGQPLQIV DSSWTPEPGS TAVKNEEDAD ELPVCELPAS SASPPRHVPE GALDADGGAA RRGAAKTRSL QDDLALASIP PSIRRYKGYV SRRRAVATAE RQRATEIAHA FRSPLPYCVI RMSTMHVYYS FMMRFPTGFS RQHLPRERTD VVLRDPGGKV WSVLYIPNTR DRLSRGWCAF ARGNCLEEGD YCVFELVAAA EFRVHIFRVV EPAVPAVRLR RVTVTCGRGP T // ID B8A9U3_ORYSI Unreviewed; 674 AA. AC B8A9U3; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 48. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_03771 {ECO:0000313|EMBL:EEC71497.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC71497.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC71497.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EEC71497.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA000812-PA; -. DR EnsemblPlants; BGIOSGA000812-TA; BGIOSGA000812-PA; BGIOSGA000812. DR Gramene; BGIOSGA000812-TA; BGIOSGA000812-PA; BGIOSGA000812. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 73966 MW; AAD8967D00FC45E9 CRC64; MGIDLNYTAS GGEEDAPAPA PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGR IRGEVAVALP PHVACRVVDV ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHYES EDVNERRSGM IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASSSK RTKLCPQGNL DVPALYGNGR PDSVETEKFP RVLQGQELMG SRTHRVTCSP QSIDITKSKS FDAWRFLTDT RSCMLGSSTS RLPVQYSGYT HQSVSFGESI GFPEVLQGQE ISQTVPPIQG MLPDACSAKS RYELKNYVCT PATMNGLSSA NEGYCLSLST VPPSPPSSLM LYQTGVPQLE LASKNNDKSG NDSQPALRQH KLLSETSWDQ FKIGKASTPG NATKPGNGGR EVDRTSCRLF GFSLTEKIIP TDKDGEKEVS YETDCQNPRM LDLFGYNCST PGALHALCAA PLGI // ID B8AB21_ORYSI Unreviewed; 495 AA. AC B8AB21; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC70251.1}; GN ORFNames=OsI_01044 {ECO:0000313|EMBL:EEC70251.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC70251.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC70251.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EEC70251.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA003083-TA; BGIOSGA003083-PA; BGIOSGA003083. DR Gramene; BGIOSGA003083-TA; BGIOSGA003083-PA; BGIOSGA003083. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 152 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 495 AA; 55530 MW; 23E4E3EA081BD7CE CRC64; MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRAIIIDCDE DDTDDVMEVV PLKMLMPKEV ENEQRTVPGI PQTCNTQNTS NGRTNTTEVP VKGQNKCASY LPKKSSVQAF CGSAMKRAQE IQTKLPAEHP SFVKHMLHSH VVSGFWLGLP AGFCNKYLPK HDTDIVLEDE NGNNHNTNYL GGKQGLSAGW RGFAINHDIK VGDVVVFELV STTKFKVHII RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA HDDTQNLVHE AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA QKSFLHRHLL RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM NVAFLLKRVD DLLGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV RNHDIALRKI ATAPW // ID B8AB34_ORYSI Unreviewed; 699 AA. AC B8AB34; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_01065 {ECO:0000313|EMBL:EEC70260.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC70260.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC70260.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EEC70260.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA003093-PA; -. DR EnsemblPlants; BGIOSGA003093-TA; BGIOSGA003093-PA; BGIOSGA003093. DR Gramene; BGIOSGA003093-TA; BGIOSGA003093-PA; BGIOSGA003093. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77472 MW; 5CCB058F2D8D5E3E CRC64; MSSQGAGGGV GDPELFAVLW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ ENLPTLPDPP LPEQPRPVVH SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG QPRRHLLTTG WSTFVTSKKL ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PASVISSQSM HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RFKMSFEGED VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE KTGIGSSEPN CISGHQVVWP GEHPGYGAVS SSVCQNPLVL ESWLKDFNSS NKGVSPTLSE ISQKIFQVTS NEARIATWPA RSAYQAEEPT SKLSSNTAAC GYRTEEVAPN ASKVVEGKKE PAMFRLFGVD LMKCTSISTT TDDKSSVGAG EASAKGTGSH EDSGQLSAFS KVTKEHIAAD ESPQEIQSHQ NYTARTRIKV QMHGNAVGRA VDLANLDGYE QLMNELEEMF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE FCQMVRKIVL YPIEDEKKIE PHPKLLSSAN PEQDQKTGF // ID B8AD69_ORYSI Unreviewed; 349 AA. AC B8AD69; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC69916.1}; GN ORFNames=OsI_00337 {ECO:0000313|EMBL:EEC69916.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC69916.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC69916.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000126; EEC69916.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA002753-TA; BGIOSGA002753-PA; BGIOSGA002753. DR Gramene; BGIOSGA002753-TA; BGIOSGA002753-PA; BGIOSGA002753. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR OMA; NTNIATF; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007015; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 123 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 123 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 37469 MW; FCD1DDF120FBC6E9 CRC64; MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSRPAA AAAQQSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRYRGRDAAT NFPGAAASAA ELAHTYADEL RQGLRRGRGM GARAQPTPSW AREPLFEKAV TPSDVGKLNR LVVPKQHAEK HFPLRRAASS DSASAAATGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SRSAYGPDKL LFIDCKKNNA AAATTTCAGD ERPTTSGAEP RVVRLFGVDI AGGDCRKRER AVEMGQEVFL LKRQCVVHQR TPALGALLL // ID B8ADX3_ORYSI Unreviewed; 678 AA. AC B8ADX3; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 56. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_07659 {ECO:0000313|EMBL:EEC73404.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC73404.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC73404.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EEC73404.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA008429-PA; -. DR EnsemblPlants; BGIOSGA008429-TA; BGIOSGA008429-PA; BGIOSGA008429. DR Gramene; BGIOSGA008429-TA; BGIOSGA008429-PA; BGIOSGA008429. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 548 641 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 74763 MW; 3352B5795E5AEA4E CRC64; MAGSVVAAAA AGGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKVQWD EPSVVPRPDR VSPWELEPLA VSNSQPSPQP PARNKRARPP ASSSIAPELP PVFGLWKSSA ESTQGFSFSG LQRTQELYPS SPNPIFSTSL NVGFSTKNEP SALSNKHFYW PMRETRADSY SASISKVPSE KKQEPSSAGC RLFGIEISSA VEATSPLAAV SGVGQDQLAA SVDAESDQLS QPSHANKSDA PAASSEPSPH ETQSRQVRSC TKVIMQGMAV GRAVDLTRLH GYDDLRCKLE EMFDIQGELS ASLKKWKVVY TDDEDDMMLV GDDPWPEFCS MVKRIYIYTY EEAKQLTPKS KLPIIGDAIK PNPNKQSPES DMPHSDLDST APVTDKDC // ID B8AF31_ORYSI Unreviewed; 972 AA. AC B8AF31; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC73531.1}; GN ORFNames=OsI_07927 {ECO:0000313|EMBL:EEC73531.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC73531.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC73531.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EEC73531.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA006113-TA; BGIOSGA006113-PA; BGIOSGA006113. DR Gramene; BGIOSGA006113-TA; BGIOSGA006113-PA; BGIOSGA006113. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 277 370 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 910 972 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 277 370 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 910 972 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 972 AA; 109504 MW; CE157E5064EF1DE3 CRC64; MRDGDDEEKK KCSRQDMKKN LRNDADEEKR KSSDDMRDGD DEEKKKRSRH DMKKNSRNDA DEEKRKRKRK CSDDLKKSVV NDASKEATSH SDWRKNRKAG SDSEQRGKKL LNGDKKAKSR KVTTPFFEKM RKIKMQRTSN QNGEKNMKSD GDSYKKTVPL SVNKGKMEKD GTNKRTLSNT LVAKERKMRP SDSMEMKMKK KKRDASFVQP DERTAQTFST KNKEKKRKAP STPLKREQKE RVASSDNKKE TKKACIVAIG NEKKNCRDGK KKKRKAAFAF FKFVRDEFEE LLFIPPAVAP SLKDLIDRHV YLEDSEGKCS KIRLSVVDGS LAFYEGWNSF VSEHCIKWGE FLLFEYTPES TFSVRVFGID SCERLHFSVK SGGKGAVKKR KERHTLSDDL ISHYNGQYQD SEDIHDGPNV SGESPRSKEP KITVDAEIGT RNLVAKSINA ASEIQDSERV ESGIGYGSLG ALGNKVRNLS NGECDTRSDS VFCIQEKTRR SEVIIISDEA YSTQVDEDTM KQTAPSEASE IHHVTINTQK DLERVVDGVC CESSVALNNK MGNLILGEPQ NKNISPACST EKTNGSEITP TTGAIPLTQE NIDTVKLNTL SCFEEDRSTT RESELAAAIP TTSETHDSDK DLGQKHQRNS VQVNSIIAVD KYPNDSEMNI SGNIFRIYEA PAGTRCLEKW KRGIVNGRAA LDDIGQVRPE KTQKAGEKLV GNCGAMGESP VDLRIESDVT DTCLKPILNI PIEELSILDS VSISKCGRSR TEVNHLFNQK GATVQLQTKK EPLKPTGSSG NRKGDKIAVS VNRVFAHQSE LQIPQQENGN FTSCVTPVAL LPAKAELLDL DDHSLQFCIP STIQKWLVFS YSVVQWMQFV EFMLIAVRAE LPKSLPITCR QKGRYDRNVV ILKDPMRRLW PVFYHDKPVF VGFTAGWKPF AAANNLQAGD VCKFVKEMDE DELAFQVYIT RK // ID B8AFR0_ORYSI Unreviewed; 681 AA. AC B8AFR0; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 53. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_08153 {ECO:0000313|EMBL:EEC73639.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC73639.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC73639.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EEC73639.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA008657-TA; BGIOSGA008657-PA; BGIOSGA008657. DR Gramene; BGIOSGA008657-TA; BGIOSGA008657-PA; BGIOSGA008657. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 675 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 73809 MW; 194F2D6A98A0531A CRC64; MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS AARVPALVPC RVASVRYMAD PDTDEVFARI RLVPLRAAED GDVEEDGAAA GEEHEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW DQYGGLMRGN ASPCAAAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVASVQVA DPIRWPQSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV GPTSIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS PAATGNSSLN WNTEKGASEG SGSGVIQNSP TDNTSSERLQ WFRENSTVSE LGLEPGQCKV FIESDTVGRN LDLSSLASFE QLYGRLSEMF CIDSAELRSR VLYRGATGEV RHAGDEPFSE FIKLARRLTI LTDAGSDNLG S // ID B8AGN3_ORYSI Unreviewed; 320 AA. AC B8AGN3; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC73062.1}; GN ORFNames=OsI_07019 {ECO:0000313|EMBL:EEC73062.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC73062.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC73062.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EEC73062.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA008106-TA; BGIOSGA008106-PA; BGIOSGA008106. DR Gramene; BGIOSGA008106-TA; BGIOSGA008106-PA; BGIOSGA008106. DR OrthoDB; EOG09360BW5; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 224 317 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 320 AA; 35968 MW; 7370298F23F0560F CRC64; MNLVRLERGS DNIPREIASV VSQKFTFCVS VTERSFMQRN IAFQVNSIET SLADKALFHS ICRESECPDH TSTPPASSNT PVGDMEKAHA DSRKRCPIMR LPLGASKKLT FEVGASEGKD IDTAVVSERQ WTPLNQVLSY VLCSCSVILV HAKIYLFFSA DTAMNPPRFF TVRLTTANQR YVATPNALSM KCASAPGRDI NLSTELKDYI KDIAQFLHPS NKFYVTTINP TFMKQDKVHF SKQFSMTYIA LIVRKKTSQI EVRIPGHSST TMVLHHSTEK RFNLKSGWTH FPTSNGIQVG TICIFHFHQT NQLQATIDVL // ID B8AHF1_ORYSI Unreviewed; 1067 AA. AC B8AHF1; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 51. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_05804 {ECO:0000313|EMBL:EEC72457.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC72457.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC72457.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000127; EEC72457.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA007153-TA; BGIOSGA007153-PA; BGIOSGA007153. DR Gramene; BGIOSGA007153-TA; BGIOSGA007153-PA; BGIOSGA007153. DR HOGENOM; HOG000241141; -. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000007015; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 934 1018 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 519 553 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1067 AA; 118456 MW; 88A72F3702AE1BDB CRC64; MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVYKSNIV AASMQKDVDA HVPSYPNLPS KLICLLHGVN LHADPDTDEV YAQMTLQPVN TYGKEALQLS ELALKQARPQ MEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELQARDIH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIV VRRHCDSNQI SLGMRFRMMF ETEELGTRRY MGTITGISDL DPVGWDESAA GERRNRVSIW EIEPVAAPFF LCPQPFFGVK RPRQLDDESE MENLFKRAMP WLGEEVCIKD TQNQNSTAPG LSLVQWMNMN RQQSSSLANT AAQSEYLQAL GNPAMQNLAA DELARQLYVQ NNLLQQNCIQ FNSPKLPQQM QTMNDLSKAA IPLNQLGAII NPQDQKQDAV NHQRQQNSIQ VIPLSQAQSN LVQAQVIVQN QMQQQKPSPT QNPQRINGQR LLLSHQQKDQ NLQLQQQLLL QQKQQLQQQQ QQQQQNQQQL NKSLGQLVNL ASQQSKLFDE ELQLQILQKL QQQSLMSQST STLSQPPLIQ EQQKLITDMQ KQLSNSHSLA QQQMMPQQEI KPSLQATPLL PTVQQEQQQK LLQKQVSLAD VSGVAFQPIS STNVIPKTGG AMIISGATQS VVTEEMPSCS TSPSTANGNH FTQSTKNRHC INTERLPPST APMLIPTSID AVTATPLMTK ELPKPNNNVK QSVVNSKLPN VAPGPQNCIN HALQTDNLET SSSATSLCPS RTDGLVHQGF PSSNFNQHQM FKDALPDVEM EGVDPSNSCL FGINNDNLLG FPIETEDLLI NALDSVKYQN HISTDVENNY PMQKDALQEI STSMVSQSFG QSDMAFNSID SAINDGAFLN KNSWPAAPLL QRMRTFTKVY KRGAVGRSID IGRYSGYEEL KHALARMFGI EGQLEDRQRI GWKLVYKDHE DDILLLGDDP WEEFVNCVRC IRILSPQEVQ QMSLDGDLGS NVLPNQACSS SDGVNGWRPR CDQNPGNPSI GPYDQFE // ID B8AMK3_ORYSI Unreviewed; 510 AA. AC B8AMK3; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC75747.1}; GN ORFNames=OsI_12632 {ECO:0000313|EMBL:EEC75747.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC75747.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC75747.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC75747.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA013132-TA; BGIOSGA013132-PA; BGIOSGA013132. DR Gramene; BGIOSGA013132-TA; BGIOSGA013132-PA; BGIOSGA013132. DR HOGENOM; HOG000240246; -. DR OMA; CDDTAES; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 209 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 409 503 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 209 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 409 503 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 510 AA; 58297 MW; AD6C06EFFC2A133E CRC64; MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD CEKVFSCAGI RNTCKSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRRK TANLASSSED SGKSYLSEFQ KEKVDALIQE IQPETTAFVA IMRKSNVQLP TPFLVISFCY AEVHFPHKSV TVTLQRPCKS KKWHPRFYKR KDARMNILRG SWVEFVKDNR VQEQDICVFV PTKDARRNFT FTVHLLRVAA AYSRGGTGVD RAGSSLGRTD VKSASEISIK EEPIDQEENI SSRNRYGVSD ESEEDEDSEG PAHPPYIVPC KSRLSRLQKK IVEEKVRSIQ SKFPVYVAIM KKSNVERSAA RCQLELGARF AAAVHLPDRR QTVVLQRRGE RWATVMQIRS GTRRLLISGW HRFVRDNRLR VGDICLFEFK THERWRLTMA VHAIFREQCC // ID B8AMK6_ORYSI Unreviewed; 111 AA. AC B8AMK6; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC75750.1}; GN ORFNames=OsI_12639 {ECO:0000313|EMBL:EEC75750.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC75750.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC75750.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC75750.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA013137-TA; BGIOSGA013137-PA; BGIOSGA013137. DR Gramene; BGIOSGA013137-TA; BGIOSGA013137-PA; BGIOSGA013137. DR OMA; MDRNSSH; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 111 AA; 12875 MW; 53FE9693D6EF72B3 CRC64; MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLDQ FGGKISRTVE LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIKNSR F // ID B8AMK8_ORYSI Unreviewed; 542 AA. AC B8AMK8; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC75752.1}; GN ORFNames=OsI_12641 {ECO:0000313|EMBL:EEC75752.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC75752.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC75752.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC75752.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA013139-TA; BGIOSGA013139-PA; BGIOSGA013139. DR Gramene; BGIOSGA013139-TA; BGIOSGA013139-PA; BGIOSGA013139. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR HOGENOM; HOG000240246; -. DR OMA; FTGRKFR; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 228 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 539 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 228 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 438 539 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 542 AA; 62039 MW; 42E2A0BE39454206 CRC64; MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLNQ FGGKISRTVE LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIENSR FAVLILDSDG CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTAQSSGG ERFARSESGE EAKESSSSEH ESSYDLVDPQ IAPMPGYVLS RGTNLSQAHE EKLDMLVQEI RPEIPLYVTT MKHSNVNSHH ASLVIAKHYA CAYFPHTSQT ITLKWHGKNR KWHPKFYIRK DQVGYILHGR WIDFVCHNHV KEGDICIFHL KNFNWRKFRA TVHLLRETIP HSFGALHIPK RFESRNGRMR LKMTDDRRVS STECRRGTME PSTTNVKKEA DNEQCNNGQG KRQEPLNFDV SVGSSKPYLT ADRVSLTEEQ FMKVEENVHS IQSEGPIYVS IMNKSNVGTD GLYIITLGRQ FATRYLPEGE QTLTLLTTGT GKAWQVKMRP RSGDARMFTL GWRDFVRDNL LQTEDICLFQ LMKNSERGLA MKVHIIRHNE RS // ID B8AML1_ORYSI Unreviewed; 843 AA. AC B8AML1; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC75755.1}; GN ORFNames=OsI_12650 {ECO:0000313|EMBL:EEC75755.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC75755.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC75755.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC75755.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA013142-TA; BGIOSGA013142-PA; BGIOSGA013142. DR Gramene; BGIOSGA013142-TA; BGIOSGA013142-PA; BGIOSGA013142. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR HOGENOM; HOG000083518; -. DR OMA; DICREYA; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 312 405 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 545 638 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 748 843 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 312 405 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 545 638 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 748 843 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 96796 MW; 54902753690F3C96 CRC64; MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTEWQN QPEKDVIDNC NKKMKTEHAS SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQGIVDCMK LTRCGQKMRK LNTRSTARDD QEKYFFKVMI GDFHKRMTIP DKFARHFKGV ISKTIKLEPR NGYTFDVQVT KKLNILVLGS GWESFVNAHD LNMGDFLVFK YNGDFLLQVL IFDPSGCEKS TSCSMENAID HVGQGWKEHN DISTSYHDQP KGNKHWMQKD SSSKGNKIGN TRSSNTPSKF SGCILPRGTC LPVVQEKKMK EKIQAIHSKT PMYGNVMTKC NVSGSLVFFY KMRRPGARCR EGHAHFNGNH IDGQYKNFFK VMIGRFRERM IIPNEFLQYF RGKIPRTIKL QLRDGCTYDV QVTKNLGKIS LQSGWKAFVT AHDLQMGDFL VFSYDGISKL KVLIFGPSGC EKVHSRPTLK NATHCGEKWE EPLHISSNSH DLPVKSPQNV SKSEKQWDSS EQENDTANIE EVALQGDDLQ GHPVLNCILP KHTRLTDMQK HQLESKVGAI HSEIPIYGCI LRKSRVHGKS QTVDICREYA DVYLPFKELN MTLQRHGKNW EVLCRTKDTR TKRLSTGWSR FAQENNLQVG DICLFELLKK KEYSMNVHII PKK // ID B8AML3_ORYSI Unreviewed; 280 AA. AC B8AML3; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC75757.1}; GN ORFNames=OsI_12652 {ECO:0000313|EMBL:EEC75757.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC75757.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC75757.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC75757.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA013143-TA; BGIOSGA013143-PA; BGIOSGA013143. DR Gramene; BGIOSGA013143-TA; BGIOSGA013143-PA; BGIOSGA013143. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR HOGENOM; HOG000240246; -. DR OMA; PVDMSGR; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 31905 MW; 8458B48EB4C6E621 CRC64; MAFRIHAVNR LYFPGPKYTI PNEFLHNFGG KIPKSIKLET RSGLTFDVQV TKNSGRVVLQ SGWASYVSAH DLKIGDFLVF KYSGDSQLKT LIFDSSGCEK VCEKPVDMSG RSYDIAMRNS QDEKKKRKQR DISRQGTVKP SEEGLKAELV PGCILPSRTD LTRLQKNILI EKVKAINSET PIYGYVMNNS SIHGIPCTVE ISKKYADVYL PFEDGTVVLQ HHGKSWNVRC CLTKQNSKRF LKGWRQFAGD NKLHLGDICL FDLLKDKKKY VMDVHIIRRK // ID B8AML4_ORYSI Unreviewed; 381 AA. AC B8AML4; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC75758.1}; GN ORFNames=OsI_12653 {ECO:0000313|EMBL:EEC75758.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC75758.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC75758.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC75758.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA013144-TA; BGIOSGA013144-PA; BGIOSGA013144. DR Gramene; BGIOSGA013144-TA; BGIOSGA013144-PA; BGIOSGA013144. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000244154; -. DR OMA; HKNSSRC; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 362 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 362 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 42860 MW; D75F9D977BD9FE2D CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF DPSGCEKATP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS AYMHERACLA EQDHREEKKE GDDEDEDEDE DEDVDKDGED RYYFCRHGGR VTEYNLSKGD KEEISRVPVP VEPGNPVLVK VIHASHLLSS RYSTVGVSPE FAGRYLGPAM AREVVMERGG GGGGGDQWHV RFVRRESSRG FHGTGWRRFA RDNGLLAHDV CLFELRLVDG AGAGDRLRRR PRPTMAVHVL RRVRGRFVLI R // ID B8AML5_ORYSI Unreviewed; 380 AA. AC B8AML5; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 48. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC75759.1}; GN ORFNames=OsI_12654 {ECO:0000313|EMBL:EEC75759.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC75759.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC75759.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC75759.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA013145-TA; BGIOSGA013145-PA; BGIOSGA013145. DR Gramene; BGIOSGA013145-TA; BGIOSGA013145-PA; BGIOSGA013145. DR eggNOG; ENOG410JU89; Eukaryota. DR eggNOG; ENOG4110744; LUCA. DR HOGENOM; HOG000244154; -. DR OMA; MHASHVR; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 380 AA; 42572 MW; BDB56529D4B48C35 CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE EVNLRSPSSE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLVRYS GVSSSFDVLI FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRNGRRTPP IVDGDNGHRH HLEMTLHRNS CRSIPRACKR SLFSDETEAK ENDGEDEDED VVAAAEGGRY GEYYFSRHGR VAEYNLRKED REEISRVPVP VQPGNPVFVQ VIHSSHVRSS KYCIVGVSPE FAGKYLGAVE REVVLERASR GGEWHVLFVH RQNTRGFYGA GWRQFAGDNR LVAHDVCLFE LTMVDAAAGG GGNRRRRWSR RPTMTVHVLR RVRGRFVLLR // ID B8ANX3_ORYSI Unreviewed; 132 AA. AC B8ANX3; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC74576.1}; GN ORFNames=OsI_10142 {ECO:0000313|EMBL:EEC74576.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC74576.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC74576.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC74576.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA011927-TA; BGIOSGA011927-PA; BGIOSGA011927. DR Gramene; BGIOSGA011927-TA; BGIOSGA011927-PA; BGIOSGA011927. DR HOGENOM; HOG000083592; -. DR OrthoDB; EOG09360S33; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 78 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 78 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 132 AA; 14916 MW; BE524303A96B1A20 CRC64; MGDGNEVIDI SSDSDDGQYG PRTFSGFDKY CCKFAAVKRT LMTNAKMTFA VQFSERYINK YIGSPIDDLM VSMAGTTQSY QMRLKRSKDS RAMLTTGWNQ LIDAKAFDEG DVCLFHFKEV DDVLVLKVHV LK // ID B8AQS1_ORYSI Unreviewed; 271 AA. AC B8AQS1; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC74747.1}; GN ORFNames=OsI_10501 {ECO:0000313|EMBL:EEC74747.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC74747.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC74747.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000128; EEC74747.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA012100-TA; BGIOSGA012100-PA; BGIOSGA012100. DR Gramene; BGIOSGA012100-TA; BGIOSGA012100-PA; BGIOSGA012100. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR HOGENOM; HOG000238878; -. DR OMA; WNVEINR; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000007015; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30804 MW; 1ABB3AAEFD6E9060 CRC64; MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLIFRYDGAA AFTVTVFDET MCRRDYRRHH DAAESGSSSS SDSSDAAAAA AATAAAEGVG DVALSQFAVT LRQCNLEDKQ AQYLNVPMEF QEAHEYARRE KVVLRMRGEA WTVRLKHSRR ERGQRTAFRY GWHRFCVDNG LAVGDTCFFR VLREGDLRRG GAADDHVLKV AVRKADGTTL E // ID B8ARE1_ORYSI Unreviewed; 833 AA. AC B8ARE1; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_17874 {ECO:0000313|EMBL:EEC78229.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC78229.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC78229.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EEC78229.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA014119-TA; BGIOSGA014119-PA; BGIOSGA014119. DR Gramene; BGIOSGA014119-TA; BGIOSGA014119-PA; BGIOSGA014119. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 734 818 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 833 AA; 92572 MW; 5E957B858FFD10B2 CRC64; MSSSSAASIG PPQPPPPPAP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAASTNKEVE GHIPNYPNLP AQLICQLHDV TMHADVETDE VYAQMTLQPL NPVRRLGFLH DVCSAEVLMQ EQNDAYLPAE MGIMSKQPTN YFCKTLTASD TSTHGGFSVP RRAAERVFPP LDFTQQPPAQ ELIARDIHDI EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRASRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLSKYIK AVFHTRISVG MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRVKH PWYSGVASLH DDSNALMWLR GVAGEGGFQS LNFQSPGIGS WGQQRLHPSL LSSDHDQYQA VVAAAAASQS GGYLKQQFLH LQQPMQSPQE HCNLNPLLQQ QILQQASQQQ IINPDAQNIQ TMLSPSAIQQ QLQQLQQMQQ VQNDQKQKIQ PDQSYQVPTS AVLPSPTSLP SHLREKFGFS DPNANSSSFI TSSSSDNMLD SSFLQGSSKA VDLSRFNQPV ASEQQQQQAW KQKFMGSQSV SFGGSVLHNS PTSKDGSVEN KIGRDVQNQS LFSPQVDSSS LLYNMVPNLT SNVSDGNLST IPSGSTYLQN AMYGCLDDSS GLLQNTGEND PATRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMFGI KGQLDDPDRS GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KMGKQGNDPR YLS // ID B8AS27_ORYSI Unreviewed; 699 AA. AC B8AS27; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 58. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_16669 {ECO:0000313|EMBL:EEC77655.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC77655.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC77655.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EEC77655.1; -; Genomic_DNA. DR ProteinModelPortal; B8AS27; -. DR SMR; B8AS27; -. DR EnsemblPlants; BGIOSGA016767-TA; BGIOSGA016767-PA; BGIOSGA016767. DR Gramene; BGIOSGA016767-TA; BGIOSGA016767-PA; BGIOSGA016767. DR eggNOG; ENOG410JQUD; Eukaryota. DR eggNOG; ENOG410XYC6; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; DEPFCAF; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 613 693 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 75737 MW; 937A7D491A14D9A5 CRC64; MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL SSIPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRNPPYA ELPLEGQIFT GPVFPPNPMA HDHHHHHGFP FLPFPDSSAQ PAGIQGARHA QFASPFPEFH IGNLQPNLML YAGIRLPPAD RAAPAPRPPR IIISTDLTIG SPGKPDDAAC SPSSGGKKID DTKPRGFLLF GQAILTEEQI KNGNSDGRPA SPNWDAEKAP NTSEGSDSGV TQGSPTKNTT PSWSLPYFGG NNISRASEYE LNPGQCKVFV ESETVGRSLD LSALSSFEEL YACLSDMFSI GSDELRSHLV YRSPAGEVKH AGDEPFCAFV KSARKLRILT DAGSDNLGD // ID B8ASH0_ORYSI Unreviewed; 457 AA. AC B8ASH0; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC77050.1}; GN ORFNames=OsI_15430 {ECO:0000313|EMBL:EEC77050.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC77050.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC77050.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EEC77050.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA015307-TA; BGIOSGA015307-PA; BGIOSGA015307. DR Gramene; BGIOSGA015307-TA; BGIOSGA015307-PA; BGIOSGA015307. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR HOGENOM; HOG000241968; -. DR OMA; FVRDYIT; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 350 457 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 350 457 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 457 AA; 49457 MW; 1B412DEAFDCFD6D1 CRC64; MITPDSSQHH RPAEKAPRVV VSPAAAMGSR GDHGGGGGGR GAARATQLKV LVPSSFRKMR ICDELAAQLG VGVGGGGAPR AATARVASPL GKAWDVGVVR DGDGRAFLGR GWAEFAAAHG LGVGWFVVLR HGGGGGGGVL AVEAFDTTCC LRVFGAPPAE AGRATDTSRK PQFLTVLLPG IMDKMRIPDK FVRDYITGEN LNSNMAIILS PLGKSWRVEL DKDQSGVFLG GGWLQLLSFH GISRGDVVIF RYEGNLVFKI SVFGPNGRQK DFKAKGISIH QGTGEQQEAP SFSRRKCNNK KKSRFGEDDG NQQEMPCSRK GSGNKGRTSD RETKRMRKTR SVYEIGPRSW IKKEINEYVL ERCILSLART FCESIGLAEE SSITLMMVDT TSTQGDQGGS SSSSRSWEVT GRRYKDACYL LGAGWRRFCE DNGVRSGDVC VFTVLDTTLW RVDIERC // ID B8ASH1_ORYSI Unreviewed; 434 AA. AC B8ASH1; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 50. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC77051.1}; GN ORFNames=OsI_15435 {ECO:0000313|EMBL:EEC77051.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC77051.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC77051.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EEC77051.1; -; Genomic_DNA. DR SMR; B8ASH1; -. DR EnsemblPlants; BGIOSGA016160-TA; BGIOSGA016160-PA; BGIOSGA016160. DR Gramene; BGIOSGA016160-TA; BGIOSGA016160-PA; BGIOSGA016160. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR HOGENOM; HOG000241968; -. DR OMA; QNGNNEH; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 326 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 326 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 434 AA; 47463 MW; 442DEA671A8C3C5F CRC64; MPGDHAGAGA AVGAAKAMQL KVLMPSSFHK MRISDELAAD LLGERGDGGG GGGGAPRRAA RVVSPVGKVW DVEVGRDDDG DGGGAFLGRG WAEFAAAHGL GMGWFVVVRH EGGGVLTVKL FDTTCCLWDF GARPAVVTTR SGRARDASNK PQFLRVLLPG FMEKMRIPAK FVQHYIAEEH LNIHMASILS PLGKFWRIEL EKDELGMFFK GGWLQFLSFH GISPGDVVLL RHEGNLVFKI KVFGINGCKK DLKTKDDITI QQSARNQHET PSFSTRKCNK NSRFGEDCKN QLQEIPCSIK GSRKKGRETK RPKKSKSIYE IGPPSWIKKE ISNYMLENGN ISLPGIFCKS IGLVEETTIT LMINSSRGRS SSSSSRSWEV ACSVNKNGYG CCNLLPSGWK RFCQANGLLV GDVCTFSVVE ATLWHVAIDR VERS // ID B8AUB5_ORYSI Unreviewed; 660 AA. AC B8AUB5; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 57. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_16025 {ECO:0000313|EMBL:EEC77345.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC77345.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC77345.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000129; EEC77345.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA016467-PA; -. DR EnsemblPlants; BGIOSGA016467-TA; BGIOSGA016467-PA; BGIOSGA016467. DR Gramene; BGIOSGA016467-TA; BGIOSGA016467-PA; BGIOSGA016467. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 626 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 660 AA; 73243 MW; DD30C8A0E01CC92F CRC64; MEMAANPGGS GTCSDALFRE LWHACAGPLV TVPKRGERVY YFPQGHMEQL EASTNQQLDQ YLPMFNLPSK ILCSVVNVEL RAEADSDEVY AQIMLQPEAD QSELTSLDPE LQDLEKCTAH SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMSQNPPCQ ELVAKDLHGT EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GESGELRVGV RRLMRQVNNM PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKKQNLSVGM RFKMRFEGDE APERRFSGTI IGIGSVPAMS KSPWADSDWK SLKVQWDEPS AIVCPDRVSP WELEPLDASN PQPPQPPLRN KRARPPASPS VVAELPPSFG LWKPPSEAAQ TLSFSEPQRA REIFPSIPAS IFSASSHVEF NSKNEPSILS NQFYWSMRDS KTDSFSASTN KARVERKQEP TTMGCRLFGI EISSAVEEAL PAATVSGVGY DQTVLSVDVD SDQISQPSNG NKSDAPGTSS ERSPLSPKVI MQGMAVGRAV DLTKLNGYGD LRSKLEEMFD IQGDLCPTLK RWQVVYTDDE DDMMLVGDDP WDEFCSMVKR IYIYSYEEAK LLAPKSKLPV IGDTIKLSSM NSSHESVDLD NHASVTNRDC // ID B8AWQ8_ORYSI Unreviewed; 712 AA. AC B8AWQ8; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 50. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_20981 {ECO:0000313|EMBL:EEC79695.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC79695.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC79695.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000130; EEC79695.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA020357-PA; -. DR EnsemblPlants; BGIOSGA020357-TA; BGIOSGA020357-PA; BGIOSGA020357. DR Gramene; BGIOSGA020357-TA; BGIOSGA020357-PA; BGIOSGA020357. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000007015; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 78027 MW; 8C92BDC2120E3DF3 CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACAGPVAPL PRKGGVVVYL PQGHLEHLGD APAAAAAAAA VPPHVFCRVV DVTLLADAAT DEVYAQLSLV PEKEEVARRA DDGEGEDGDG MKQRFARMPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGV RRAAQLKNGS AFPALYNQCS NLGTLANVAH AVATESVFNI YYNPRLSQSE FIVPYWKFMK SLSQPFSVGL RFKMRYESED ASERRYTGII TGSGDTDPMW HGSKWKCLLV RWDDDAEFRR PNRVSPWEIE LTSSVSGSHL STPHSKRLKP CLPHVNPEYM VPRGGGCPDF AESAQFHKVL QGQELLGFKS HGGTAAATSQ PCEARHLQYI DERSCSSDAS NSILGVPRLG DRAPLGNPGF SYHCSGFGES QRLQKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH GRAAFHGPPA LALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RVIDISTMDM MI // ID B8AZB1_ORYSI Unreviewed; 279 AA. AC B8AZB1; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC79411.1}; GN ORFNames=OsI_20363 {ECO:0000313|EMBL:EEC79411.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC79411.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC79411.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000130; EEC79411.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA017853-TA; BGIOSGA017853-PA; BGIOSGA017853. DR Gramene; BGIOSGA017853-TA; BGIOSGA017853-PA; BGIOSGA017853. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR HOGENOM; HOG000239798; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000007015; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 31637 MW; D2927B237172EB1F CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA DEEAVGDKDT STEDAAEQDD SPNAEPLKGT KRRKLRGRR // ID B8B257_ORYSI Unreviewed; 1137 AA. AC B8B257; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_24368 {ECO:0000313|EMBL:EEC81270.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC81270.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC81270.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000131; EEC81270.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA023559-PA; -. DR EnsemblPlants; BGIOSGA023559-TA; BGIOSGA023559-PA; BGIOSGA023559. DR Gramene; BGIOSGA023559-TA; BGIOSGA023559-PA; BGIOSGA023559. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000007015; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1003 1087 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 573 602 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1137 AA; 125832 MW; A60D8C6A612949DC CRC64; MAAAAAAAVV GSGCEGEKTK APAINSELWH ACAGPLVSLP PAGSLVVYFP QGHSEQVAAS MQKDVDAHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQAQTN LGQAQVLVQN QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQKLLQQQQ QQLLLQQQQQ LSKMPAQLSS LANQQFQLTD QQLQLQLLQK LQQQQQSLLS QPAVTLAQLP LIQEQQKLLL DMQQQLSNSQ TLSQQQMMPQ QSTKVPSQNT PLPLPVQQEP QQKLLQKQAM LADTSEAAVP PTTSVNVIST TGSPLMTTGA THSVLTEEIP SCSTSPSTAN GNHLLQPILG RNKHCSMINT EKVPQSAAPM SVPSSLEAVT ATPRMMKDSP KLNHNVKQSV VASKLANAGT GSQNYVNNPP PTDYLETASS ATSVWLSQND GLLHQNFPMS NFNQPQMFKD APPDAEIHAA NTSNNALFGI NGDGPLGFPI GLGTDDFLSN GIDAAKYENH ISTEIDNSYR IPKDAQQEIS SSMVSQSFGA SDMAFNSIDS TINDGGFLNR SSWPPAAPLK RMRTFTKVYK RGAVGRSIDM SQFSGYDELK HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW EEFVGCVKCI RILSPQEVQQ MSLEGCDLGN NIPPNQACSS SDGGNAWRAR CDQNSGNPSN GSYEQFE // ID B8B628_ORYSI Unreviewed; 947 AA. AC B8B628; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 48. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC82689.1}; GN ORFNames=OsI_27346 {ECO:0000313|EMBL:EEC82689.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC82689.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC82689.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000132; EEC82689.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA023709-PA; -. DR EnsemblPlants; BGIOSGA023709-TA; BGIOSGA023709-PA; BGIOSGA023709. DR Gramene; BGIOSGA023709-TA; BGIOSGA023709-PA; BGIOSGA023709. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000007015; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 621 671 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 947 AA; 103813 MW; 4788B2ACBC597FD1 CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVNARNDDLT IIAKNNLPFM VKNVEAGQSS NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAIVSG YSGFFQSIKG GADTSSIYDH HVNSADGDVS WLKTDKFGSR PDEGSLQFLK RGRNIGSKSR RLSMDAEEAW ELKLYWDEVQ ELLRPAPTAK PTVVMIEDYE IEEYDEPPVF AKRSIFTIRS TGEQDQWIQC DDCSKWRRLP LNVIVASKWT CADNTIDSKS CSCSAPEELT PKELHIVLQQ YEDMRRRRNS FGFKQNIPEM DAVSLDAFAT AAVYGDVGNQ GSPSVATTTK HPRHRAGCTC IVCIQPPSGK GPKHNPACTC NVCMTVRRRF KTLMMRKKQR QSEREEAEAS KKIAWMNRDE PEGSSLSRSP QTVDTTRDGD VTMFDKVDIN KGHIDLNFHP TAVRDEERHG GQPRVSMVSL LEVANRPLEN YMKQNGLTSL AGEQGSSSTC TGAATVPQPA LVESEERTSN NDGGRVATAE QPESMAVDEA GDNQPDKAAG DSAAALA // ID B8B7G4_ORYSI Unreviewed; 802 AA. AC B8B7G4; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC82272.1}; GN ORFNames=OsI_26485 {ECO:0000313|EMBL:EEC82272.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC82272.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC82272.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000132; EEC82272.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA025947-PA; -. DR EnsemblPlants; BGIOSGA025947-TA; BGIOSGA025947-PA; BGIOSGA025947. DR Gramene; BGIOSGA025947-TA; BGIOSGA025947-PA; BGIOSGA025947. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR OMA; PAGMNQI; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000007015; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 300 401 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 605 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 300 401 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 802 AA; 89025 MW; EB29D2D7E87D7289 CRC64; MHGVFCFSHS FEHGGFCETF HLEVAGWRNC ESCGKRLHCG CIVSVHAFVH LDAGGVECVM CARKSHAAMA PSPIWSSSMH MAQNVADRKD NFVKSWRPPA GQFSSQWRQN NMWSMSTMQS DLQQRLAFEF DRPSGSEKLL PGRTFIHAHE KKFDDMHDRS TTPAGMNQIM RERKGVTSDP CSSVSTTFKL DSHHPSILKD DPSAVPAGLS SNFSSANGPK DHIRIGPTQQ QQQMASSSLQ KQFYSHSVID NDFQAQLRNG RPRMDAKARS QLLPRYWPRI TDQELQHLSG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS QAEGLPLKVQ DATGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA TNLSAEQDQP TKPANGVLPP PEANNKVVVP DSSPNAAVPR PIKVNTESKS SSPVEQATAC KIDKGALPQK EGPGTSSSSP LPVKRKATSV GPKIKRFHMD SEESMELKIT WEEAQELLRP PPKAPSIVVV DGHEFEEYEE PPILGRRTYF VTDQSGENHQ WAQCEDCSKW RKLPVDALLP SKWTCSDNKW DSERSSCDSA QEINMEELGE MIPIKPGAAK KTKGKVDTDN IDVSDGLDTL ANLAILGEGE SLPSQPTTRH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN VCMTVRRRFR TLMMRREKRQ QSEKDSGVPR KREPGQSSEP VPQSGSGAHP TSTSSPHQRA DTNGEGPEDM SIDNKRTSSP VKNQIDLNSQ PEREDEQSPK SDATRLLRDN PT // ID B8B7V5_ORYSI Unreviewed; 722 AA. AC B8B7V5; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_25144 {ECO:0000313|EMBL:EEC81622.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC81622.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC81622.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000132; EEC81622.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA024709-TA; BGIOSGA024709-PA; BGIOSGA024709. DR Gramene; BGIOSGA024709-TA; BGIOSGA024709-PA; BGIOSGA024709. DR HOGENOM; HOG000034040; -. DR OMA; KHVADAW; -. DR OrthoDB; EOG093603HK; -. DR Proteomes; UP000007015; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 198 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 448 549 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 198 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 448 549 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 722 AA; 78910 MW; 702CB400A377745F CRC64; MAQPPDAAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKNIWD KKRCRYMLGD LGVNDNDGWR GFVKAKRLAT RDTVVFMRRG GGGGDGDGDG ELLVGVRRAP RARGGHHPRP GVEDNKVVSE VWLEMQGVTP FEVTYYPREG TFEFVVSRDE YIGFSFSPFY PFVPGTTVHL RMNPLQIAQS ISGTVRTFDH LRPWRMLEVD WDQAASPISY RIRRQVNSWQ VLRQPQPAAT TSAVRIRDAI VATPQVQIMA PPRPPPPTTT TGMVPSDDSY AMISLFPGDC YVTHRPLPAA RDPVGGQREF CFFDKKLSPS DAAANGGGSG ALFVIPKPSA AEHVLPRIPD LRVTNLQGGR WEFGHTWSDA DTDRRSSSHT LAAGWSAFVK AKRLCVGDTV IFMRRRPGGE PIVGVRRKPH GGMLVGIPDK HVADAWLDAV GTAEFVVRRE EVEGSPPLAP GTRVRLLMNP DDVRRRSQPP VYGTVRDVHS RSKWRMLEVD WDRDSPLAPT MNRRVNSWQV QPVQLALPPQ GSDEAAAAAT TSTAHAGDAT TSAPSLALQL QTMASSSSSS APIIPSRGSA FRIVNPRDGS QG // ID B8B7V6_ORYSI Unreviewed; 796 AA. AC B8B7V6; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC81623.1}; GN ORFNames=OsI_25146 {ECO:0000313|EMBL:EEC81623.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC81623.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC81623.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000132; EEC81623.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA025273-TA; BGIOSGA025273-PA; BGIOSGA025273. DR Gramene; BGIOSGA025273-TA; BGIOSGA025273-PA; BGIOSGA025273. DR HOGENOM; HOG000084466; -. DR OMA; VDGHAEQ; -. DR OrthoDB; EOG0936037F; -. DR Proteomes; UP000007015; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 505 604 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 505 604 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 796 AA; 88317 MW; 93C4FC9F82119BF0 CRC64; MAAAAAPLAD DGDGIVDRAM WLACAAPNSG RLPAVGSMVF YFVDGHAEQF CQFPAPLLEQ LAVPGPRVFL CTVAAVRLRA DALTNEAYAD ITLDPVADHD VPRLLPAPAP AAAAGGQQQQ LRYFVKTLMS SDAEYRDRFA VPMDVAKDVF PPLVDAKAVQ PLIVKDLQGS PMTFDYGRNG NRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL PVAVQEVIAA AGRAAAGEQF TATYRSRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA PPPPLSPKRL KSSEDHLPPP KASASAAAAK ASPSSSAQAQ QFSITREMWR ACAAPKSGRL PAVGSFVYYF PDGHAQQCPS RPPEPLPGRV FLCKVTAVRL DATRNELFAT MSLIPVARDQ AIQPQAPADP GPSSPQVKTT LVSFVKPLTC TDAVKNRYRF IVPKREAAMG VLPQLQLNEH VPLYIKDMHG KEWVINYTWK EYTHMLSSGW IKFANANRLV TGDNVVFMRS MDSGERYMGL RRTLKPEPVS VDEVIEAVWR AARLEPFEVA YLSRQDGDEF VVPLPNVGPQ GKVIAIENYA TSIWRMIQVE WPSCAGMNRY VNFWQIREVL GESSFEASTC IVRSQDYSPA PQRNLVNALQ LPDGTKQLQQ NKKSVSSSST FRLFGKKMTP GVPPRRDTSG LSGQVSLFSH YLPHDEDDGQ VPTMRQRLET LFPDNI // ID B8B8U2_ORYSI Unreviewed; 1031 AA. AC B8B8U2; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_29915 {ECO:0000313|EMBL:EEC83899.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC83899.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC83899.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000133; EEC83899.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA026655-PA; -. DR EnsemblPlants; BGIOSGA026655-TA; BGIOSGA026655-PA; BGIOSGA026655. DR Gramene; BGIOSGA026655-TA; BGIOSGA026655-PA; BGIOSGA026655. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000007015; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 913 997 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 47 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1031 AA; 115008 MW; 9E1544E92FF0488A CRC64; MEADPDTDEV YARMTLQPVS NVTQCDKETL LASELALKQT RPQTEFFCKT LTASDTSTHG GFSVPRRAAE RIFPRLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLLAGDS VLFIRDAKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SQFTIYYNPR ASTSEFVIPF AKYQKAVYGN QLSLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKTS HWRNIQVAWD EAAPTERRTR VSLWEIEPII APFFIYPSPL FTAKRPRLPG MTDDETEMDG LLKRAMPWVG EEICKKDLNI QNSVVPGLNL AQWMNMQHSS SLPGTVVQPE LLNSLSGKPV QNLAAADLSR QISFHPQFLQ QNNIQFNTAL VPQQNQQTEQ LAKVIPTPNQ LGSVIIPQKV VQDCNSEQRQ HVVTQPVQGS QPNINIPQPQ LVVQAQLQQP QVILQAQLQQ PQVVVQAQLQ QTQPSVQSHT VLQGGLQQIQ LLQQQQPHVQ HQQIPQQLHH QQQQTQQLQP VQQVQQSVQE HQQIKIQPVH VSMDASMNTQ VADHQMKLQL LKALQPQQPL ISEQQKMLLD LQQQVINSQS APQQCVQVTN QAISLHNSNT IQYPTQQKVQ SHQVQDLTGN VIPNSKSDIA TSMGASSLHV AGGRQLLKTD DVPSTSTSPS TNSNPVLLQS IPSSSKNQSL TTAGKTSQSS VVLGPTIEQD TKPYQNVKQT VMIPKTTEQR PATGQDCINN NPQMDYLDTS SSATSVCLSQ ADGSLQQNFP PSSFHQHHLL KDTVPDSEFE VTDPRNNLLF GVNIDGQLGL PLNADLLAND IGTDKYMDQL PGNGISNFIS SKDSQQELSS SMISHSFGVA DMAFNSIDSA INDTPFLNRN SRSAAGPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK HDVARMFGIE GQLGDQNRVG WKLVYEDHEK DVLLVGDDPW EDFVKCVRCI RILSPQEEMQ MRLVGDFGDS FLPNQACSSS DGGHPWRITG D // ID B8B9R0_ORYSI Unreviewed; 381 AA. AC B8B9R0; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC83369.1}; GN ORFNames=OsI_28781 {ECO:0000313|EMBL:EEC83369.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC83369.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC83369.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000133; EEC83369.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA027192-TA; BGIOSGA027192-PA; BGIOSGA027192. DR Gramene; BGIOSGA027192-TA; BGIOSGA027192-PA; BGIOSGA027192. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR OMA; FSENNDC; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007015; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 285 378 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 285 378 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43322 MW; 78C49A112AB08F30 CRC64; MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC MPLSHAHPQS MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV QRDQDCRVGV IPDPIIGQKT ILSRVQVNVV KRKIQNIGSQ IPIFVSVMGK NNASGRISSL SIANRYVDNY LQDEKTIRLS RLGDKWNIRL SDSSGNRRMV GGCRKFAEDN DVGVGDICLF ELLKNHKCTM KVHIIRAKDI C // ID B8B9R5_ORYSI Unreviewed; 423 AA. AC B8B9R5; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC83374.1}; GN ORFNames=OsI_28786 {ECO:0000313|EMBL:EEC83374.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC83374.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC83374.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000133; EEC83374.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA027187-TA; BGIOSGA027187-PA; BGIOSGA027187. DR Gramene; BGIOSGA027187-TA; BGIOSGA027187-PA; BGIOSGA027187. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR HOGENOM; HOG000084532; -. DR OMA; RMGDSMM; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007015; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 326 420 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 326 420 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 423 AA; 48116 MW; B612A9D2F98BFEC3 CRC64; MGTWCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD IPEEIQLETH NRNSYTVRVD KSQEKVIFAA GWAQFVKTFD LRMGDSMMFR FKGNSQFDVI IFDQVGREKV CSVAVDDYLD PNVQEGRTDA TETLNSSRAH SQDDYLDPNV QEGRTNATET LNSSRAHSQP MPMQTPATET LNSSRAHSQD MPMQSPATET LNSSRAHPQP MPMQLPTETV NHFHAPHYPM QMPIENMALS RTQAMPTQMQ SPPTYRWTQV QRDNLSCRVG VIPDPIIGRR TKLNPVQEKV VNFKIQHIHS EIPIFVAVIK RSNVSGVLST LSVAKRYVDE YLGGERFISL SRLGGKWGIR LAGGGGSGTR MVGGWQKFVN ENDFGVGDIC LFELLKNHKG TMDSHIIKAT DIF // ID B8BHI0_ORYSI Unreviewed; 690 AA. AC B8BHI0; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_34050 {ECO:0000313|EMBL:EEC67182.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC67182.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC67182.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000135; EEC67182.1; -; Genomic_DNA. DR STRING; 39946.BGIOSGA033142-PA; -. DR EnsemblPlants; BGIOSGA033142-TA; BGIOSGA033142-PA; BGIOSGA033142. DR Gramene; BGIOSGA033142-TA; BGIOSGA033142-PA; BGIOSGA033142. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007015; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 675 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 690 AA; 75215 MW; 9D4AD72BD233ECDB CRC64; MRVLDWQVWW VSGDRIWGLE MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF VKDDTPYNAV WKGIFTEQQI TSSGSTETLS PGVTGNSAPN GNAHKTGNAS DGSGSSICIG FSSQGHEASD LGLEAGHCKV FMESEDVGRT IDLSVFGSYE ELYGRLADMF GIEKEEIINH LHFHDAAGVV KHPGEVPFSD FMKAARRLTI IAGDRERIER PLIECLVEQA // ID B8BJ68_ORYSI Unreviewed; 363 AA. AC B8BJ68; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 48. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC67704.1}; GN ORFNames=OsI_35175 {ECO:0000313|EMBL:EEC67704.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC67704.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC67704.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000136; EEC67704.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA034469-TA; BGIOSGA034469-PA; BGIOSGA034469. DR Gramene; BGIOSGA034469-TA; BGIOSGA034469-PA; BGIOSGA034469. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; QHAGESQ; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000007015; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 363 AA; 40323 MW; 12690052E7621D6F CRC64; MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD VVHFERVRGS FGVGDRLFIG CRRRGDAAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS TSGGGSYPTS PANSYAYRRA ADHDHGDMHH ADESPRDTDS PSFSAGSAPS RRLRLFGVNL DCGPEPEADT TAAATMYGYM HQQSSYAAMS AVPSYWLFSS SSWLPETLLT VWAPGSRHGW GGFRKHQVEK ERGIEETGRE LYVCQYVSSV CIVGPRTNPE ADVSTPASSG NITLSPFHLF YCA // ID B8BJK1_ORYSI Unreviewed; 422 AA. AC B8BJK1; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 50. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC67837.1}; GN ORFNames=OsI_35443 {ECO:0000313|EMBL:EEC67837.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC67837.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC67837.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000136; EEC67837.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA034352-TA; BGIOSGA034352-PA; BGIOSGA034352. DR Gramene; BGIOSGA034352-TA; BGIOSGA034352-PA; BGIOSGA034352. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR HOGENOM; HOG000070541; -. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000007015; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 314 409 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 314 409 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 47922 MW; 465AA7ADEB794FA3 CRC64; MDRRKNREVG RSRREEERVV MVVGEEQGGW MEKGKEKEGD INCFGRSFFR VLLTLQSLER MKIPSSFNQC LQNQPTGMVS LVDRSGNKWS AELTSDSEGF FFVHGWKEFV RDNSIQCGQF LVFTYDKRSQ FSVTVFEPSG IDKISTFSAH PSKNVIIKTE SDEGGMVTAA ITTEKMAPAL KENNGITGKR TRDVDYLMED RVVVFKKSSE ANVCESSRRK RAGASAGKSK VTSTSHNSTR GSSCSSDEDN SSSKSPNPPF LMRFLSGEVS RRGRCVSKGQ RQLTVISQRR PVTEAEKDHA LQRAREFKSK NPFAVQIMME SYVYVGFFMN IPCEFVRECL PRTNKRITLW DPQGKAWEVN YVYYSDRSVG SFSGGWGKFA VGNNLEKFDV CVFELVQKDN IKVHIYRVVP EITPHKLRSD PK // ID B8BMS8_ORYSI Unreviewed; 743 AA. AC B8BMS8; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC69597.1}; GN ORFNames=OsI_38944 {ECO:0000313|EMBL:EEC69597.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC69597.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC69597.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000137; EEC69597.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA037705-TA; BGIOSGA037705-PA; BGIOSGA037705. DR Gramene; BGIOSGA037705-TA; BGIOSGA037705-PA; BGIOSGA037705. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR HOGENOM; HOG000085118; -. DR OMA; PTKFANF; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000007015; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 281 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 489 587 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 641 740 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 281 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 489 587 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 641 740 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 743 AA; 84743 MW; ECB8E76929B09929 CRC64; MGDQKRSFIN VMIGDFVAVP TKFANFIRGQ ISEVVKLEVP NGKTYDVHVA KEHNELVLRS GWGAFARDYE LKQCDILVFT YSGSSRFKVR IFNPSGCEKE LSCVMMNNTP CGHEGSMSYH DNHLQSPSES SSFFNISLPP HSPFQELSGT ILKMFAKNVQ GLISGVAKLE VPDGKTYDVE ISKEHNELVF RSGWEVFAIA YELEQGDILA FGYSGNSHFK VQIFNPSNCE KELSCVVMNR SISDDNHRQS PRRERMNKPS TTCMDCITNH YWLHMDDRER YFFKVMMSVS DIKDELAIPK KFAANVRGKI PEQVRLEVSD GKMYNVQVTE EQDELVLRSG WENFSSTYQL KHGDLLVFIH SGHSHFKVLI FDPSCTEKEF SCVVTDNTSH VHERSISHDN HLQSPRSEIL GKNYSLCSSR KRSRMNPADY PSQRPDVPSS EDIKDPMSSG GLQKSKKSCY VLPMLYNMTS AQEAEVLALE KKIQPQIPLY ITAMDKTSVA SGSLVFCKNY AVRYLLDQNR TIKLCQSGGS QTWDISLDMD TDDLYALSTG WLDFFRGNLL QEGDICVFEA SKSKRGVALT FHPFKESHCP KSSEYTLSTK SPTRRVPKRD YFATNLTNLT DQQERKVKNK IKSIQSDIPI FLSVMRSSNC TRQSSLCFSV KYASKYLPHK DQNMRLRLPE TKYKCKAALH IDTSTNLHKL LKGWGKFVND NKLEIHDICL FQLMKNKKKL TMTIHIIRKG ECS // ID B8BMS9_ORYSI Unreviewed; 471 AA. AC B8BMS9; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC69598.1}; GN ORFNames=OsI_38945 {ECO:0000313|EMBL:EEC69598.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC69598.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC69598.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000137; EEC69598.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA037706-TA; BGIOSGA037706-PA; BGIOSGA037706. DR Gramene; BGIOSGA037706-TA; BGIOSGA037706-PA; BGIOSGA037706. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR HOGENOM; HOG000085118; -. DR OMA; EYLPRES; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000007015; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 217 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 468 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 217 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 370 468 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 471 AA; 53553 MW; 8CADF3DAF3608D8D CRC64; MDNHGKSFIK VMITDFKNGV TIPAKFARNF GGQMSGTVKL ETRNGKTYEV QVAKELNNLV LRSGWERFAS AYELEKGDIL VFIYSGNSHF KVWIYDPSAC EKELPCIITE QLPRVQQRSI SHNNHTQLKR NAKSAKLYVD SSGHSKETSE TNPANSPSWK PTERVPSSEE LDEPVDLANV QKATKSFYSL PRMCNMTSAQ KAEVDALEKR IKPQIPFYIT VMDKASATDG LLAISKDYAV SYLLDKNETI KLCHSGRSMT WDISLDIDTD DQYALSTGWL DFIRNNHLQE GDICVFEASK NKRGVALIFH PLKQSHHPKP PGCVPSTKFP RHGVSKPNYI VSRFTTLSGQ LKIKVEAKVQ AIQSEIPIFV AVMRESFIRG RSRYMCFSAK YAAKYLPREK NKIMSLRLPN KSYKYKAVFK INNKVHKLGG GWGKFVDDNK IKLGDICLFQ LMKNKKKLMM MVHIIRKSEF C // ID B8BNA0_ORYSI Unreviewed; 273 AA. AC B8BNA0; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 51. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEC68891.1}; GN ORFNames=OsI_37536 {ECO:0000313|EMBL:EEC68891.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC68891.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC68891.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000137; EEC68891.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA036599-TA; BGIOSGA036599-PA; BGIOSGA036599. DR Gramene; BGIOSGA036599-TA; BGIOSGA036599-PA; BGIOSGA036599. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000007015; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 30467 MW; FE37EC2B5FFBAE19 CRC64; MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS YDPTSPANSY AYHRSVDQDH SDILHAGESQ READAKSSSA ASAPPPSRRL RLFGVNLDCG PEPEADQATA MYGYMHHQSP YAAVSTVPNY WGS // ID B8BPM5_ORYSI Unreviewed; 840 AA. AC B8BPM5; DT 03-MAR-2009, integrated into UniProtKB/TrEMBL. DT 03-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 51. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=OsI_38317 {ECO:0000313|EMBL:EEC69273.1}; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC69273.1, ECO:0000313|Proteomes:UP000007015}; RN [1] {ECO:0000313|EMBL:EEC69273.1, ECO:0000313|Proteomes:UP000007015} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015}; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., RA Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000137; EEC69273.1; -; Genomic_DNA. DR EnsemblPlants; BGIOSGA036199-TA; BGIOSGA036199-PA; BGIOSGA036199. DR Gramene; BGIOSGA036199-TA; BGIOSGA036199-PA; BGIOSGA036199. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007015; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007015}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007015}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 186 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 712 796 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 186 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 840 AA; 93193 MW; BBBA292D04681714 CRC64; MSMSMFVSSQ SKILRAAWKS QPPRKAQQQQ AAAESPEATN HIAPSTASVE ASTNQVAEQQ GAPLYNLPWK IPCKVMNVEL KAEPDTDEVY AQLTLLPEKW YGNVSKDKVE EEEVVPPAAT ERPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLYSF FDRLIVAMPL TSLLDQDMSQ HPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRAMR QQANIPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPSEFVVPR DLYKESLKRN HSIGMRFKMT FEGEEAAEQR FTGTIVGVGD SDPSGWADSK WRSLKVRWDE AASVPRPDRV SPWQIEPANS PSPVNPLPAP RTKRARPNVL ASSPDLSAVN KEVASKVMAN SQQNGLPRAF HSQENMNLRS RFGDSNELNT SQKLTMWSSG SNQEKNNVSV QRELGSQSWM QMRSPDGSSE ILSGFQPLKD TRNPLSSFPS QISGNRSNTW NTINVHYPDQ NANHNMYPGT WSLMPPNTGF GVNQQNYLMT PDITLPQRSL NAKFGGNGAF TSLRAHGIDQ RSSGWLGHIE PSSHIDDASS SLIKPQPLVI DHNVQKAKGS SCMLFGISLD SPAKPELLIS PPSVAFDGKL QQDALEEDEC SDPSKTVKPL DGAQHDSATE KHQSCPDGTK NIQSKQQNGS SRSCKKVHKQ GIALGRSIDL TKFTCYDELI AELDQMFDFN GELNSSSKNW MVVYTDNEGD MMLVGDDPWN EFCNMVHKIF IYTREEVQKM NPGALNSRSE DSRSTSVERG LVGEGLRGGL STPSLNSENC // ID B9GFH6_POPTR Unreviewed; 297 AA. AC B9GFH6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE83470.2}; GN ORFNames=POPTR_0001s32990g {ECO:0000313|EMBL:EEE83470.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE83470.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE83470.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000337; EEE83470.2; -; Genomic_DNA. DR RefSeq; XP_002298665.2; XM_002298629.2. DR STRING; 3694.POPTR_0001s32990.1; -. DR EnsemblPlants; POPTR_0001s32990.1; POPTR_0001s32990.1; POPTR_0001s32990. DR GeneID; 7495823; -. DR Gramene; POPTR_0001s32990.1; POPTR_0001s32990.1; POPTR_0001s32990. DR KEGG; pop:POPTR_0001s32990g; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR HOGENOM; HOG000112670; -. DR InParanoid; B9GFH6; -. DR OMA; VHRKKRM; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000006729; Linkage group LGI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 33467 MW; F10482FE4F91ECBC CRC64; MAGGEGVTVE GDNKQSPNIE GGSDLVIRGS TRDHLVGSMV GFEIKRKKRM PRQRRSSSTI NHLLSFAANA SCSATTHLHV PAFSLPLQDP SSLPARVIDP RRLRFLFQKE LQNSDVSSLR RMILPKKAAE VHLPFLESKE GIFISMDDLD GLHVWSFKYS RYWPNNNSRM YVLENTGDFV NAHGLQLGDF IMVYQDSQSQ NYVIQAKKAS DQNVYSDIAR NAVNDTVLHD YEVNKFSSFY VNYPVVDNTG LSFIYDTTTF SNYSPLDFLG GSMTNFSRIG HLESFGSVEN MSLDDFY // ID B9GJG2_POPTR Unreviewed; 884 AA. AC B9GJG2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0001s36900g {ECO:0000313|EMBL:EEE83644.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE83644.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE83644.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000337; EEE83644.1; -; Genomic_DNA. DR RefSeq; XP_002298839.1; XM_002298803.2. DR STRING; 3694.POPTR_0001s36900.1; -. DR EnsemblPlants; POPTR_0001s36900.1; POPTR_0001s36900.1; POPTR_0001s36900. DR GeneID; 7487515; -. DR Gramene; POPTR_0001s36900.1; POPTR_0001s36900.1; POPTR_0001s36900. DR KEGG; pop:POPTR_0001s36900g; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9GJG2; -. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006729; Linkage group LGI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 751 836 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 884 AA; 97754 MW; 20031FC178932D91 CRC64; MRHSSAGFNP QTHEVEKRVL NSELWHACAG PLVSLPAVGS RAVYFPQGHS EQVAASTNKE VNAQIPSYPS LPAQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKAA YLPADMGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ HPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYLKAVYYT RVSVGMRFRM MFETEESSVR RYMGTITGIS DLDVVRWPNS QWRSVKVGWD ESTDGERQPR VSLWEIEPLT TFPTYPSPFP LRLKRPWPPG LPSFHGLGIK DDDLGKNPSL MWLRGDGDCG YQSLNFQGTG VSPWVQPRVD ASMLGLQNDV YQTMATAAFQ EMRTLDPSKS SAASFLQFQQ HQNLPTRSAA LMQPRVQENK HQSQTPSQSH LIQQQLLHHH LLDSPQQQQQ PFLQQQQLAD QQIPNGVSAI SQYASASQSL TPPLQAISLC QQHSYSDSNG NPATSPAVSS LQSLLDSFPP NESSHLLSWP RINPLVTSSG WPSKRAAVES LTSSGAPQCM VTQVEQLGPL HTSITPSSVS LPPFPGRECS IDRDGGTDQQ NHLLFGVNIE PSSLLLQNGM SSLRGVGSDS DSTTIPFSSN YISTAGTNFS LNPAMTPSSC IDDSCFLQST ENASQGNPPT RTFVKVYKSG SFGRSLDITK FSSYNELRSE LSRMFGLEGQ LEDPLRSGWQ LVFIDRENDV LLLGDGPWPE FVNSVWYIKI LSPQEVQQMG KRGLELLNSF PIQRLSNGSC DDYANRQDSK SSSTGITSVG SLDY // ID B9GL31_POPTR Unreviewed; 595 AA. AC B9GL31; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 63. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0001s10900g {ECO:0000313|EMBL:EEE84260.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE84260.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE84260.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000337; EEE84260.2; -; Genomic_DNA. DR RefSeq; XP_002299455.2; XM_002299419.2. DR EnsemblPlants; POPTR_0001s10900.2; POPTR_0001s10900.2; POPTR_0001s10900. DR GeneID; 7467068; -. DR Gramene; POPTR_0001s10900.2; POPTR_0001s10900.2; POPTR_0001s10900. DR KEGG; pop:POPTR_0001s10900g; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9GL31; -. DR KO; K14486; -. DR Proteomes; UP000006729; Linkage group LGI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 477 558 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 595 AA; 66472 MW; 7F4A064458792F6D CRC64; MMAMNRGIGG GGGGGSLSQG NSEGCGGDDL YTELWKACAG PLVDVPKRGE RVFYFPQGHM EQLEASTNQE LNQRVPLFNL PSKILCRVIH TQLLAEQDTD EVYAQITLIP ESDQIEPTSP DSSSSEPPRP TVHSFCKVLT ASDTSTHGGF SVLRKHATEC LPPLDMTQPT PTQELVAKDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDSFV FLRGENGELR VGVRRVACQQ SSMPSSVISS QSMHLGVLAT ASHAVSTLTL FVVYYKPRTS QFIISLNKYL EAVSNKFVVG MRFKMRFEGE DSPDRRFSGT IVGVEDFSPH WNDSKWRSLK VQWDEPAPIP RPDRVSPWEI EPCVASVPTN LSQPVTQKNK RPRPPFEIPA LGYSTPLSSK SKNDAILDPS DKGRKSEVPT SYRLFGIDLV NHSSSSTPIE VPAQLMSICS VSKEQKPEQL QKSPKEIQSK QSSTSTRSRT KVQMQGIAVG RAVDLTMLKG YSQLIDELEQ LFDIKGQLHP RDKWEIVYTD DEGDMMLVGD DPWPEFCNMV RRIYICSSQD VKRMGPGSKL PKLPIKVVFG LRGWFKLERQ EALAD // ID B9GMS5_POPTR Unreviewed; 792 AA. AC B9GMS5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 63. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0001s13110g {ECO:0000313|EMBL:EEE84149.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE84149.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE84149.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000337; EEE84149.2; -; Genomic_DNA. DR RefSeq; XP_002299344.2; XM_002299308.2. DR SMR; B9GMS5; -. DR STRING; 3694.POPTR_0001s13110.1; -. DR GeneID; 7491424; -. DR KEGG; pop:POPTR_0001s13110g; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 668 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 88937 MW; 0BEAA1F75F71AA2B CRC64; MINGSYSVDN KRNGIARGSS SFPVAGEGSE DALYKELWHA CAGPLVTVPR QGELVYYFPQ GHIEQVEAST NQVADDQQMP AYNLPPKILC RVVNVQLKAE LDTDEVFAQV ILLPVAEQDV DLVEKEDLPP PPARPRVHSF CKMLTASDTS THGGFSVLRR HADECLPPLD MSLQPPAQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSAKKLVA GDAFIFLRGE TEELRVGVRR ALSQPSNVPS SVMSSHSMHI GILATVWHAV STGSMFTVYY KPRTSPAEFI IPIDKYRESV KINYAIGMRF KMKFEAEEAP EQRFSGTVIG VEEADPKKWP RSKWRCLKVR WDETSPVHRP DRVSPWKIER ALAPSLDPVP GCQSKRHRSN MATSSADSSA PTKKDNEPSR HLQHKEILTL RNTHAGKNYS DSKHNPAQAL FQGKDQTAFD NRKLGPDDKI PQVMHGAKLM NLTTGPGTLH ESYESTHPFF ELNSDDVDRP SKLNETGMFN CHSAPLMYLG HPFNMMASRM EVHVAKDKDI QQQRGSWFSP LPYADNSSHP SGSKPQHLPF QQRNKETSKD GNCKLFGFSL FGNPMAAEPA IIHRHSTEKQ QQQINVASDH LKLLGSEGFL EQAKHSKHVR PEEQGNIFQA SALHSKDVQG MPEGDSTRRC VKVYKQGTAV GRSLDLAKFN GYNELTAELD QIFEFHGELV APNKDWLIVF TDDEGDMMLV GDDPWQEFCS MVRRIFVFTR EEINRMEPRS LNLEAEGNSQ SADQMVDLMG DGTSKHLPAV SP // ID B9GNZ5_POPTR Unreviewed; 430 AA. AC B9GNZ5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 62. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EEE80478.2}; GN ORFNames=POPTR_0002s13130g {ECO:0000313|EMBL:EEE80478.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE80478.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE80478.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; EEE80478.2; -; Genomic_DNA. DR RefSeq; XP_002301205.2; XM_002301169.2. DR EnsemblPlants; POPTR_0002s13130.1; POPTR_0002s13130.1; POPTR_0002s13130. DR GeneID; 7483754; -. DR Gramene; POPTR_0002s13130.1; POPTR_0002s13130.1; POPTR_0002s13130. DR KEGG; pop:POPTR_0002s13130g; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000154089; -. DR InParanoid; B9GNZ5; -. DR OMA; IEHESSE; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 312 411 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 312 411 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 430 AA; 48939 MW; AFB27ECB8E0B3DDB CRC64; MGEETCKECR SWEEKIYWTH FQCVQFSQFL HSGFDQRLAI PEIFARHLRK KLPDTVNLKG PSGAAWEVGL TTYNNTLFFN HGWQEFVKDH ALEENDFLIF KYNGESDFDV LMFDMQSMCE KVAPYFVKKY ESAERGNGCR TKRKTVKSSV GVVYASPKGV VGGSQPEEFK DNDTDAIPVG QPIVSRVTDK KICRGIKSTE GTEEDVVGGS QQEECTYNGS DTIPPLRQPI ISPFGKKKIS REIKSIKPVQ YWRVVKSRGP STREEIEAEP DVQSLGQPVD TVHHARKGRE VTEEEKRNAV QLAARAVTEN GFLVLMKPTH VYGRFFVAIP SAWLATHLPI KGNQDVILRF KDRAWHTRFF YHKSRNNGGL TAGWKKFALD NNLHEFDVCV FEPLDLVNYP IILNVSIFRV VEEASPITSQ EDEKKSQGHA // ID B9GQX6_POPTR Unreviewed; 933 AA. AC B9GQX6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0002s02630g {ECO:0000313|EMBL:EEE79992.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE79992.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE79992.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; EEE79992.2; -; Genomic_DNA. DR RefSeq; XP_002300719.2; XM_002300683.2. DR STRING; 3694.POPTR_0002s02630.1; -. DR EnsemblPlants; POPTR_0002s02630.1; POPTR_0002s02630.1; POPTR_0002s02630. DR GeneID; 7490662; -. DR Gramene; POPTR_0002s02630.1; POPTR_0002s02630.1; POPTR_0002s02630. DR KEGG; pop:POPTR_0002s02630g; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR HOGENOM; HOG000241141; -. DR KO; K14486; -. DR OMA; SINAPTI; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 819 903 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 933 AA; 102084 MW; 840ACD7C6391FE6A CRC64; MGSAEEKIKT GGIINGAQTN LLEEMKLLKE FQDQSGTRKA INSELWYACA GPLVSLPQVG SLVYYFPQGH SEQVAVSTKR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIHAQMSL QPVNSEKDVF PVPDFGLKPS KHPSEFFCKA LTASDTSTHG GFSVPRRAAE KLFPPLDYSM QPPSQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRNEKSH LMVGVRHANR QQTTLPSSVL SADSMHIGVL AAAAHAAGNR SPFTIFYNPR ACPSDFVIPL IKFRKTVFGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD EPGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLQSGF LGDTEWGGLV KKPLALLPGS GNASLPYASM SNMYSEQLIN MLMKPQAVNY PGICGTALPE VSAVKVASLD VKNMQAAINQ TPQLNQSGIT PIENQNYSQI CLDQSNAMNS YSSKANVAGK SLSLSKVENQ ASVGGVDGKF KAKPEHLPDQ LSQPTSTGEC IVQKPISCPM TQQNATNHLV FQNQNQGQSQ LQASLWPMQA LTESSLLNSQ QIRASLADAT TPNCSLPFLD AGEWISHPMS IDSMCRSGPL SMFGLQDPSL PFMHQDAWDH QMSNLRILSE ANQLIPLAQQ EPCSFNSGAV KDSSDESNDQ SGIYGSLNID ASNGGGSVYD RSVSSAILDE FCTLKDADLQ NASDCLVGNL SSSQDVQSQI TSASLADSQA FSRQDFPDNS GGTSSSNIEF DNSNLLQNNS WQQVAPRVRT YTKVQKTGSV GRSIDVSSFK NYEELCSAIE CMFGLDGLLN NPKGSGWKLV YVDYENDVLL IGDDPWEEFV GCVRCIRILS PSEVQQMSEE GMKLLNSANI QGINTPITEG IHA // ID B9GR87_POPTR Unreviewed; 718 AA. AC B9GR87; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 63. DE SubName: Full=ABA insensitive 3 family protein {ECO:0000313|EMBL:EEE82361.2}; GN ORFNames=POPTR_0002s25330g {ECO:0000313|EMBL:EEE82361.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE82361.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE82361.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; EEE82361.2; -; Genomic_DNA. DR RefSeq; XP_002303088.2; XM_002303052.2. DR STRING; 3694.POPTR_0002s25330.1; -. DR EnsemblPlants; POPTR_0002s25330.1; POPTR_0002s25330.1; POPTR_0002s25330. DR GeneID; 7471190; -. DR Gramene; POPTR_0002s25330.1; POPTR_0002s25330.1; POPTR_0002s25330. DR KEGG; pop:POPTR_0002s25330g; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR HOGENOM; HOG000238595; -. DR InParanoid; B9GR87; -. DR OMA; EIWLDDH; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 577 679 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 577 679 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 718 AA; 79829 MW; A6695B2B2B6828B6 CRC64; MKGLEVHGED RHEGVENEGN PTIGFDAMEE EQDILVEDKE IWLERGQEDL LHASDVSIFY EDFPPLPDFP CMSSSSSSSS TPAPVNAITS SSSSSCSSSA SSSSSAAAWA VLKSEAEEDV EKNHQHPMDD PVDVSTAALS STCSMEVPQP PDQAMELGIE CMDVMEDFGY IDLLESNDFF DPSSIFHPDE GIFEEFQMEQ NEPQDQLQLQ YDEQAGNEEI TKGKNDQEAD HQGGRSDDLA MVFLDWLKSN KETVSADDLR RVKLKKTTIE CAARRLGGGK EGMKQLLKLI LQWVQTNHLQ RRRMRESSSN VNLLYPYNQD PLQNQNPNPN SNLNCNPIPA DHSNPCFTQS PWNVAPPPYL AADPATVMPG FSPMVGFMGD PFSNGSSNIN GHPYGTPQDC NHMLQSYQTW PPSQFHSASH FNSFADNNLQ SAQPQNPAFT GYGNQYPYQY VPANGDNRLT RLGSSATKEA RKKRMARQRR FLSYHRNQNH HNIQHQNQGA GDPHERLSDD PNGAPTGQSN PGSWVYWPTA AGGGSASTTV DAPVDRPAMQ AQTNNHRQAA AERRQGWKPE KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE THLPELEARD GISIAMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGDFVR TNGLQEGDFI VIYSDVKCGK YLIRGVKVRQ PAGPKPENKR AGKSQRNSHA NCPAAANNGS GSQKQTVK // ID B9GSQ4_POPTR Unreviewed; 936 AA. AC B9GSQ4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0002s05590g {ECO:0000313|EMBL:EEE80127.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE80127.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE80127.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; EEE80127.2; -; Genomic_DNA. DR RefSeq; XP_002300854.2; XM_002300818.2. DR STRING; 3694.POPTR_0002s05590.1; -. DR EnsemblPlants; POPTR_0002s05590.1; POPTR_0002s05590.1; POPTR_0002s05590. DR GeneID; 7480706; -. DR Gramene; POPTR_0002s05590.1; POPTR_0002s05590.1; POPTR_0002s05590. DR KEGG; pop:POPTR_0002s05590g; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; B9GSQ4; -. DR OMA; YMSRQDL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 783 867 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 936 AA; 103464 MW; 66899174126E2F98 CRC64; MRLSSSSSST TGFNQVTQEG DNKCLNSELW HACAGPLVSL PHVGSRAVYF PQGHSEQVAA STNKEVDAHI PNYPSLPAQL ICQLHNVTMH ADVETDEVYA QMTLQPLSPE DKKDAYLLPA ELGTASKQPS NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDFSQTPPA QELIARDLHD NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRANRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRTSPS EFVIPLVKYI KAVYHTRVSV GMRFRMLFET EESSVRRYMG TITGISDLDP ARWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSAFPMRLK RPWPSGLPSF HGLKDDDLSI NSPMMWLQGG VGDLGVHSLN FQNFGAAPWI QPRFEASMPA LQPDVYQTMA AAALQEMRTV ESSKLASQSL LQFQQSQNLS TGPAALVQRQ MLQQSNLQNA FLQNFQENQA STQTQLLQQQ LQQHIQYTDQ QQQQQQRHQP QHQHQHQHQQ VQQPKQLNEL SAQQQIPNVI SALPHLTSVA PSHSPSLQAI PSQCQQQAFS EPLGNLIAAS GVSSVPSIMG SLPQDRGHLL NSNGSNPVSS SALLSKQAAF GPQLSSGAAP GVLPQVEQSG TTQSAVSDLA TLLAPFSGRE YSTYQGANDP QNNLLFGVNI DSSTFMLQHG IPNLRNIGTE NDPLSMPFTA STFTSATGSD IPLTSDMTAS SCVDESGFLQ SSENVDQVNP STRTFVKVHK SGSYGRSLDI SKFSSYDELR SELARLFCLE GQLEDRQRSG WQLVFVDREN DVLLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGLTSAA SVPSQKLSNS TSDGYMNRQE FRNSSNPDGY LNRQDFRNSS NGIASMGSLD YQGRCS // ID B9GSR6_POPTR Unreviewed; 91 AA. AC B9GSR6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 54. DE SubName: Full=Auxin response factor 16 family protein {ECO:0000313|EMBL:EEE80778.2}; GN ORFNames=POPTR_0002s19810g {ECO:0000313|EMBL:EEE80778.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE80778.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE80778.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; EEE80778.2; -; Genomic_DNA. DR RefSeq; XP_002301505.2; XM_002301469.2. DR EnsemblPlants; POPTR_0002s19810.1; POPTR_0002s19810.1; POPTR_0002s19810. DR GeneID; 7460452; -. DR Gramene; POPTR_0002s19810.1; POPTR_0002s19810.1; POPTR_0002s19810. DR KEGG; pop:POPTR_0002s19810g; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 88 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 88 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 91 AA; 10595 MW; D22AC559BFDB5DF8 CRC64; MVPILESTTF SRLDYTAEPP EETILAKDVH GETWKFRHIY RGAPRRHLLN TGWSNFVNKK NSWLGTRLCF SEQRIGTFVL EFDVLREGLV A // ID B9GUH0_POPTR Unreviewed; 594 AA. AC B9GUH0; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 45. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0002s09050g {ECO:0000313|EMBL:EEE80293.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE80293.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE80293.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; EEE80293.2; -; Genomic_DNA. DR RefSeq; XP_002301020.2; XM_002300984.2. DR STRING; 3694.POPTR_0002s09050.1; -. DR EnsemblPlants; POPTR_0002s09050.1; POPTR_0002s09050.1; POPTR_0002s09050. DR GeneID; 7495122; -. DR Gramene; POPTR_0002s09050.1; POPTR_0002s09050.1; POPTR_0002s09050. DR KEGG; pop:POPTR_0002s09050g; -. DR eggNOG; ENOG410IJN8; Eukaryota. DR eggNOG; ENOG410ZJKK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9GUH0; -. DR OMA; IDPKIWR; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 594 AA; 65780 MW; 91BEE263BC73CAD3 CRC64; MPQPQLTELS RVDPRFWRAC AGSSVQIPAV NSRVYYFPQG HFEQSSSSTA PHPPFLTNLA LSKPSIPCQI SAVDFLADPV TDEVFTRLLL IPLDNPFSNL PLSFLEPCRS EGEGANDVDD DERKILAFSK ILTPSDANNG GGFSVPRFCA DSIFPPLNYQ AEPPVQTLTV ADIHGVSWDF RHIYRGTPRR HLLTTGWSKF VNNKKLIAGD SVVFMRNLKG EMFIGVRRAV RFNNSARWRE QVSDSGGDGK VKVEEGFSRS WRGRLSQEAV VEAVERAAKG LPFEVVYYPR AGWYSDFVVR AEVVEAALRV FWTAGMRVKM AVETEDSSRM TWFQGTVSGT GLPDCGAWRG SPWRMLQITW DEPEVLQNVK RVSPWQVEFV ATTLPLQDAS PPMKKLRYPN DSGFLTNGEL FFPMSDLTNS RTGHMNASML NYSTFPAGMQ GARQDPFSTF SLSNLISENA SQVFGDKVFG NNLVPKMKRM PSEMNIGSLQ SGDLSPESQS SAHSFGKDFT GNRSFNPKKV GISSIQLFGK IIHMNQPVEN GFDSVGFMDN SSKGCNETEG VNALELSLTS SYTELLNRID VQCQSASAVE ACSA // ID B9GXS6_POPTR Unreviewed; 548 AA. AC B9GXS6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 63. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s14200g {ECO:0000313|EMBL:EEE78641.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE78641.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE78641.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE78641.2; -; Genomic_DNA. DR RefSeq; XP_002303662.2; XM_002303626.2. DR STRING; 3694.POPTR_0003s14200.1; -. DR EnsemblPlants; POPTR_0003s14200.1; POPTR_0003s14200.1; POPTR_0003s14200. DR GeneID; 7497860; -. DR Gramene; POPTR_0003s14200.1; POPTR_0003s14200.1; POPTR_0003s14200. DR KEGG; pop:POPTR_0003s14200g; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9GXS6; -. DR KO; K14486; -. DR OMA; EDISSHW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 436 517 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 548 AA; 61187 MW; 7EC261E02111A02C CRC64; MEQLEASTNQ ELNQRVPLFN LPSKILCRVI NTQLLAEQET DEVYAQITLL PESDQIETTS PDPCPSEPPR PTVHSFCKVL TASDTSTHGG FSVLRKHASE CLPPLDMIQP IPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRGENGEL RVGVRRVARQ QSSMPSSVIS SQSMHLGVLA TASHAISTLT LFVVYYKPRT SQFIISLNKY LEAVNNKFAV GMRFKMRFEG EDSPERRFSG TIVGVEDFSP HWNDSKWRSL KVQWDEPASI SRPDRVSPWE IEPCVASVPA NLSQPVQPKN KRPRPPIEIP AFAMEDSKSV SPWPVFVGYS TPLSSKSKND PIPDPSNKGR KYEVPTSYRL FGFDLVNQST SSSSPIEKVS AQPISVSRGA TDGRVLAALP AVDSDQKHEQ SSTSTRSRTK VQLQGIAVGR AVDLTLIKGY GQLIDELEQL FDIKGQLHPR DKWEIVYTDD EGDMMLVGDD PWPEFCNMVR RIFICSSQDV KKMSPGSKLP MLALEGEGTV LSSDSAEN // ID B9GXZ9_POPTR Unreviewed; 121 AA. AC B9GXZ9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE79237.2}; GN ORFNames=POPTR_0003s07050g {ECO:0000313|EMBL:EEE79237.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE79237.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE79237.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE79237.2; -; Genomic_DNA. DR RefSeq; XP_002304258.2; XM_002304222.2. DR EnsemblPlants; POPTR_0003s07050.1; POPTR_0003s07050.1; POPTR_0003s07050. DR GeneID; 7471607; -. DR Gramene; POPTR_0003s07050.1; POPTR_0003s07050.1; POPTR_0003s07050. DR KEGG; pop:POPTR_0003s07050g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9GXZ9; -. DR OMA; ERWRFRC; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 121 AA; 14143 MW; 4CEBC34880E51E67 CRC64; MPKLLFTKKL SKTDIKHRMA VPLDSLDAFQ IPEGEHSKEF GVTDIHGERW RFRCRSRKTD RFPKPALSSG WMEFVKTRDL REGDEVTFSV MDMKGAEDLE LGIQARKRIE LFGQVFWSEP L // ID B9GYV2_POPTR Unreviewed; 369 AA. AC B9GYV2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 63. DE SubName: Full=AP2 domain-containing transcription factor family protein {ECO:0000313|EMBL:EEE79004.1}; GN ORFNames=POPTR_0003s21810g {ECO:0000313|EMBL:EEE79004.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE79004.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE79004.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE79004.1; -; Genomic_DNA. DR RefSeq; XP_002304025.1; XM_002303989.2. DR EnsemblPlants; POPTR_0003s21810.1; POPTR_0003s21810.1; POPTR_0003s21810. DR GeneID; 7463612; -. DR Gramene; POPTR_0003s21810.1; POPTR_0003s21810.1; POPTR_0003s21810. DR KEGG; pop:POPTR_0003s21810g; -. DR eggNOG; ENOG410IWEF; Eukaryota. DR eggNOG; ENOG410YI8X; LUCA. DR HOGENOM; HOG000090522; -. DR InParanoid; B9GYV2; -. DR KO; K09287; -. DR OMA; HEPDFQE; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 169 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 169 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 316 340 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 369 AA; 42725 MW; 30A56DC7FB55251C CRC64; MEDQDASSSM ISSAKSPTIN VETLAFSTSN KLGRLHSNIG NVAKFKGIVP QKNGHWGAQI YSNHQRIWLG TFKTEKEAAM AYDSAAIKLR STDSHRNFPW NDRNVQEPSF QNQYSTEEIL NMIRDGSYQQ IFVDFIMKQS QREEIGGSDD PNGRRVHADD EQFSCIQLFQ KDLTPSDVGK LNRLVIPKKF AVKYFPNIFK DVEDDRVLNA AGVDDTELIF YDRFMKSWKF RYCYWRSSQS FVFTKGWNRF VKEKKLKEKD IIIFYTCACP NKVLEQHGQG QYFSMIDVVY CNGQGGKVDG FNQTEDVQRE LAVVLRQNMR KKLQKDGKEL KEEKETLKNK VKQKGFRLFG VQINEVELQL QPCFQTGTE // ID B9GZ32_POPTR Unreviewed; 780 AA. AC B9GZ32; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 59. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s16210g {ECO:0000313|EMBL:EEE78732.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE78732.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE78732.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE78732.2; -; Genomic_DNA. DR RefSeq; XP_002303753.2; XM_002303717.2. DR GeneID; 7496534; -. DR KEGG; pop:POPTR_0003s16210g; -. DR InParanoid; B9GZ32; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 638 731 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 780 AA; 88404 MW; 00C44967B71CBAD4 CRC64; MINGSNSVDI NRNGIASRSW SFPVACEGSE DALYKELWHA CAGPLVTVPR QGELVYYFPQ GHIEQVEAST NQVADDQQMP AYNLSPKILC RVVNVQLKAE LDTDEVFAQV ILLPETQQDV ELVEEEDLPP LPARPRVHSF CKMLTASDTS THGGFSVLKR HADECLPPLD MSLQPPVQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSAKKLVA GDAFIFLRGE TEELRVGVRR ALRQPSKIPS SLISSHSMHI GILATAWHAV STGSMFTVYY KPRTSPAEFI IPVDKYMESV KINYAIGMRF KMRFEADDAP EQRFSGTVIG VEEADPKKWP RSNWRCLKVH WDETSPVHRP DRVSPWKVEP ALAPSMDPVS GCRLKRHRPN TVTSSADSSA LTKKDNGPSR HMQHQEILTL RNTPTGKNYS DNNHNPPWVL SQGTGTLLKS YESSRPFFGL FSDDVDQPSK LTSDEKSMFN WHSAPMMYTG HPFNMLASSM EVQVAKDKDT QQQHGSRFLP FPYADSSPHP SRSKPQHLPF QQCNERTAKD DNYKLFGVSL FRNSKALEPA TIHRHSADKP QHQINVASDH LQLLGSDRYL EQLKHPKHAR CEEQENIFQA SSLYSKDVQG KPEGGSARRC VKVHKQGTAV GRSLDLAKFN GYNELTAELD QIFEFNGELV APNKDWLIVF TDDEDDMMLV GDDPWQEFCS MVRRIFIYTK EEINRMEPRS LNREAEGNSR STDQMVDLEN RISKHLPAVS PSECQGLCYM TGSKVMRPER // ID B9GZ46_POPTR Unreviewed; 110 AA. AC B9GZ46; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE78121.1}; GN ORFNames=POPTR_0003s00430g {ECO:0000313|EMBL:EEE78121.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE78121.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE78121.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE78121.1; -; Genomic_DNA. DR RefSeq; XP_002303142.1; XM_002303106.2. DR EnsemblPlants; POPTR_0003s00430.1; POPTR_0003s00430.1; POPTR_0003s00430. DR GeneID; 7480745; -. DR Gramene; POPTR_0003s00430.1; POPTR_0003s00430.1; POPTR_0003s00430. DR KEGG; pop:POPTR_0003s00430g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9GZ46; -. DR OMA; RIEVKXD; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12591 MW; 8F445D3F4306BEAE CRC64; MEKSFTKKLN DIDIERRLLL SENCIKDFPR GHEAYLKFKD EDGQVWTFRC RVPPGGGSKP ALSGDWFLFV RSKDLKVGDV IVIALDREKD QAAGEQFTIK VKKTTSTTRK // ID B9GZ48_POPTR Unreviewed; 121 AA. AC B9GZ48; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE78122.1}; GN ORFNames=POPTR_0003s00450g {ECO:0000313|EMBL:EEE78122.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE78122.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE78122.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE78122.1; -; Genomic_DNA. DR RefSeq; XP_002303143.1; XM_002303107.1. DR EnsemblPlants; POPTR_0003s00450.1; POPTR_0003s00450.1; POPTR_0003s00450. DR GeneID; 7480746; -. DR Gramene; POPTR_0003s00450.1; POPTR_0003s00450.1; POPTR_0003s00450. DR KEGG; pop:POPTR_0003s00450g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9GZ48; -. DR OMA; DAFRIPE; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 121 AA; 13994 MW; A1F722DCADABBDFF CRC64; MPKNLFIKEL SKTDIEYRMA VPMKSLDAFR IPEGEHSKDF GVTDIHGKRW RFRCSTRKSD PYPKPVLSSG WIEFAKTRSL KVGDEVTFSV VDMKGAEDLE LGIQARKRIK LFGQEFWSNP L // ID B9GZ50_POPTR Unreviewed; 119 AA. AC B9GZ50; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE79024.1}; GN ORFNames=POPTR_0003s00470g {ECO:0000313|EMBL:EEE79024.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE79024.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE79024.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE79024.1; -; Genomic_DNA. DR RefSeq; XP_002304045.1; XM_002304009.1. DR EnsemblPlants; POPTR_0003s00470.1; POPTR_0003s00470.1; POPTR_0003s00470. DR GeneID; 7461526; -. DR Gramene; POPTR_0003s00470.1; POPTR_0003s00470.1; POPTR_0003s00470. DR KEGG; pop:POPTR_0003s00470g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9GZ50; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 108 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 119 AA; 13745 MW; B101D68EBCD597B2 CRC64; MANLRKTLSE TDVEVRFSVP SKWFKENLFS RFEGKNKLDL PVKDLSGEVQ SFGFSVRTKG NHFKPVISRG WRKFVHAKGL KPGNKIIFVM ENDPETGTEY KVEVIKEIRL FGRDIEGRV // ID B9GZE6_POPTR Unreviewed; 119 AA. AC B9GZE6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE78133.2}; GN ORFNames=POPTR_0003s01220g {ECO:0000313|EMBL:EEE78133.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE78133.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE78133.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE78133.2; -; Genomic_DNA. DR RefSeq; XP_002303154.2; XM_002303118.2. DR EnsemblPlants; POPTR_0003s01220.1; POPTR_0003s01220.1; POPTR_0003s01220. DR GeneID; 7480761; -. DR Gramene; POPTR_0003s01220.1; POPTR_0003s01220.1; POPTR_0003s01220. DR KEGG; pop:POPTR_0003s01220g; -. DR HOGENOM; HOG000090526; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 119 AA; 13711 MW; 6B830DF9070164BF CRC64; MQIFSKVLRD TDVHVRFSFP THCLEHLDFA GNNSVDLYVK DSCGELRVIR CLKRNGVYDK PVLSMGWLKF VADYGLRVGD KVVLHREDDH NLGSQFMIEA KRRIMLLGEE AWGDVTRAN // ID B9GZR3_POPTR Unreviewed; 119 AA. AC B9GZR3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE78154.2}; GN ORFNames=POPTR_0003s01240g {ECO:0000313|EMBL:EEE78154.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE78154.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE78154.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; EEE78154.2; -; Genomic_DNA. DR RefSeq; XP_002303175.2; XM_002303139.2. DR EnsemblPlants; POPTR_0003s01240.1; POPTR_0003s01240.1; POPTR_0003s01240. DR EnsemblPlants; POPTR_0003s01610.1; POPTR_0003s01610.1; POPTR_0003s01610. DR GeneID; 7478130; -. DR Gramene; POPTR_0003s01240.1; POPTR_0003s01240.1; POPTR_0003s01240. DR Gramene; POPTR_0003s01610.1; POPTR_0003s01610.1; POPTR_0003s01610. DR KEGG; pop:POPTR_0003s01240g; -. DR InParanoid; B9GZR3; -. DR OrthoDB; EOG0936007D; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 119 AA; 13897 MW; 02CD557739F018C5 CRC64; MQIFSEVLGD TDVRFRFSLP AHCLQHLDFA GNNYVDLHVK DSSGELRVIR CLKRNEDYDK PVLSKGWLKF VADYGLRADD MVVLHREDDH NLGSQFRIEA KRRIKLFGEE DWSDVTRAN // ID B9H228_POPTR Unreviewed; 918 AA. AC B9H228; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE85512.1}; GN ORFNames=POPTR_0004s03530g {ECO:0000313|EMBL:EEE85512.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE85512.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE85512.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; EEE85512.1; -; Genomic_DNA. DR RefSeq; XP_002305001.1; XM_002304965.2. DR STRING; 3694.POPTR_0004s03530.1; -. DR EnsemblPlants; POPTR_0004s03530.1; POPTR_0004s03530.1; POPTR_0004s03530. DR GeneID; 7490792; -. DR Gramene; POPTR_0004s03530.1; POPTR_0004s03530.1; POPTR_0004s03530. DR KEGG; pop:POPTR_0004s03530g; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; B9H228; -. DR OMA; CASAYEQ; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 362 463 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 638 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 362 463 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 918 AA; 100849 MW; 3BF7B45665D416D3 CRC64; MSSSPPHLPT STTATTANNN NTSCSSSSTA LSRKCFNSDC TDFKSRKGWR LRSGDFAELC DRCASAYEEG SFCETFHLRA SGWRCCESCG KGVHCGCIVS IQTFTLLDAG GIACMACERK SFVLESNPQI LLTATSADVT SNPAWSPLFY HAPFPERLKD LSVKSWSQLA GSGPVPWRQA PSLFNPSAAQ SELQTRMPYE VDRLNTGERF SAPSLEKRKV EDFSEKFING NLRIRLQDIV ENGNAGIIGE EQPQPSSSLM EDASGQQFGI TIPYKSISES NSQIEGSVNA LQPAPPPPFT KHFHGSLHNG VDSSVDGHIR NGKPRTDARG RSQLLPRYWP RFTDGELQQI SGNSNSVIKP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLR VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDIVTFSRLE PEGKLVMGFR KATSAPPSDQ DNETSQTGNG VSTKGDAELD PSPWSKVDKS GYIAKEVLEG KSSIRKRKSS TLGSKSKRLR IENEDMIELK LTWEEAQGLL RPPPDHVPSI VAIEGFEFEE YEDAPVLGKP TIFATDNVGQ KIQWVQCEDC LKWRKLPANA LLPSKWACSS NTWDPERSSC SVAQELTAEQ LEDLLPSCNL VVTSKRSKDA KKDIDRVEAL EGLDTLANLA ILGEGEAFPA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC QTVKRRFKTL MMKREKKQSE KEAETKQSEK EAETTRKRQQ EPSAEKLLDD EPSPSSNTGS ESGSPNKKKT VSEGSDDDPS RMKSSTSPFK GQIDLNIQPE REDELSPGSD SGGMMRMLQD ATETYLRMQR FLSSDGDNNP SGNHMLSSGG TREKVSDVIM LGSSHQDADK DHPSAFSMNA SASTPATG // ID B9H2P5_POPTR Unreviewed; 709 AA. AC B9H2P5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0004s04970g {ECO:0000313|EMBL:EEE85616.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE85616.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE85616.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; EEE85616.2; -; Genomic_DNA. DR RefSeq; XP_002305105.2; XM_002305069.2. DR STRING; 3694.POPTR_0004s04970.1; -. DR EnsemblPlants; POPTR_0004s04970.1; POPTR_0004s04970.1; POPTR_0004s04970. DR GeneID; 7470245; -. DR Gramene; POPTR_0004s04970.1; POPTR_0004s04970.1; POPTR_0004s04970. DR KEGG; pop:POPTR_0004s04970g; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9H2P5; -. DR KO; K14486; -. DR OMA; IVDYPFC; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 78006 MW; F534E75425DF3A47 CRC64; MVGMIDLNTT EEDETTPSSG SLSSPSSSSA ASALSASGSG SGTSPVCLEL WHACAGPLIS LPKRGSIVVY VPQGHLEQLP DLPLGIYDLP PHVFCRVVDV KLHAEAASDD VYAQVSLVPE SEEIEQKLRE GVFEGDGEEE DVEATVKTTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYTQQRP SQELVAKDLH GSEWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL GVRRAAQVKC GPTFPALWNQ QLNQSSLADV ANAISMRSAF RIYYNPRASS SEFIIPFNKF LKSLDQSFSA GMRVKMRFET EDAAERRYTG LITGISELDP TRWPGSKWKC LLVRWDDTEA NRHSRVSPWE VEPSGSVSGS GSGSISSSNN SMAPGLKRSR SGLPSLKAEF PIPDGIGASD FRVSSRFQEV LQGQEIMRSG IRGSIPTSEN SFKGIGFNES YRFHKVLQGQ EIFPRSPYRR IPNANKAREN CGLGLSDGVQ RSSSRNGWST MMQGYNTQMR PPTQVSSPSS VLMFQHASNQ VSNPTSIFNS NDHEEQTTNT QSWFYPETHG GKFKLSSHSD PGLRGDSQCS TNPYVLSHEH LQHGISQPVV AQSAFRSSQD MVLCKSSCRL FGFSLTEDRH VVNKEDNIAS ITSPLNPESS FLPRVGEQLH PKPPAINNAV GSSCTKAILQ HHAENYRIY // ID B9H3I2_POPTR Unreviewed; 827 AA. AC B9H3I2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0004s07640g {ECO:0000313|EMBL:EEE86428.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE86428.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE86428.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; EEE86428.2; -; Genomic_DNA. DR RefSeq; XP_002305917.2; XM_002305881.2. DR GeneID; 7487430; -. DR KEGG; pop:POPTR_0004s07640g; -. DR HOGENOM; HOG000241141; -. DR InParanoid; B9H3I2; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 718 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 827 AA; 92121 MW; 73EFF4461E32E7C2 CRC64; MKLSTSGLGG QQAGEKKCLN SELWHACAGP LVSLPTAGSR VVYFPQGHSE QVAATTNKEV DAHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPQEQKETF LPMDLGMPSK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRATRP QTVMPSSVLS SDSMHIGLLA AAAHAAATNS CFTVFYNPRA SPSEFVIPLS KYVKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHPGS PSLLDSRDEA SNGLMWLRGG SGEPGLPSLN FQANMLPWMQ QRLDPTMLGN DHNQRYQAML AAGMQNLGSG DPLRQQFMQL QQPFQYLQQS SSHNPLLQLQ QQQQQQAIQQ SIPHNILQAQ NQISTESLPR HLLQQQLNNQ PGDQAQQHQH IYHDGLQIQT DQLQRQQSNL PSPSFSKTEY MDSSSKFSAT NTPMQNMLGS LCSEGSVNLL DFSRAGQSTL TEQLPQQSWV PKYAHQEVNA FANSISLPRT YPEKDPSMEA ENCSSDAQNP TLFGANIDSS GLLLPTTVPR YSTSSIDADV SSMPLGDSGF QNSLYGCVQD SSELLSNAGQ MDPPTPSGTF VKVYKSGSVG RSLDISRFSS YHELRGELAQ MFGIEGKLEN PHRSGWQLVF VDRENDVLLL GDDPWELFVN NVWYIKILSP EDVLKLGEQG VEPSGPNAVH RMSGGVA // ID B9H4U4_POPTR Unreviewed; 914 AA. AC B9H4U4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 60. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0005s25800g {ECO:0000313|EMBL:EEE94702.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE94702.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE94702.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000341; EEE94702.2; -; Genomic_DNA. DR RefSeq; XP_002307706.2; XM_002307670.2. DR STRING; 3694.POPTR_0005s25800.1; -. DR EnsemblPlants; POPTR_0005s25800.1; POPTR_0005s25800.1; POPTR_0005s25800. DR GeneID; 7477660; -. DR Gramene; POPTR_0005s25800.1; POPTR_0005s25800.1; POPTR_0005s25800. DR KEGG; pop:POPTR_0005s25800g; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; B9H4U4; -. DR KO; K14486; -. DR OMA; ADEWISH; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000006729; Linkage group LGV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 829 910 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 914 AA; 100074 MW; 9249BEF8EB7AEAF7 CRC64; MGSVEEKIKT GGLANGAQTN LLEEMKLLKE FQDQSGIRKA INSELWYACA GPLVSLPQVG SLVYYFPQGH SEQVAVSTRR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIYAQMSL QPVNTEKDVF PIPDFGLRPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRDEKSQ LMVGVRRANR QQTTLPSSVL SADSMHIGVL AAAAHATANR SPFTIFYNPR ACPSDFVIPL IKFRKAVFGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD EPGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLQSGF LGDSEWGSLV KKPLSWLPGS GNANLPYASM SNICSEQLIN MLMKPHPINY PGICGAALPE VSAAKVASLD VKNMQATINQ MPQLNQSGVT SVENQNYSQI CLDQSDAIIS SSLKINVAGK SFSSSEVENQ ASVGVGERKL KAETEHLPDQ LSQLTSTGEC IVQKPSSCPM TQQNATNHLA FQNQNQGHSQ LQTNLWPAQA FPESSLLNSQ QILSPLADAT APNCSLPFLD ADEWISHPMS LAGMYRSGPL SMFGSQDTSV VFPEAINPSL PFMNQDVWDH QMSNSTFLSQ ANQLISSTQQ EPCTLNSGAV KDLSDESNDQ SGIYGSLNFD ASNGGGSVVD PSVSSAILDE FCTLKDADLQ NASDCLVGNL SSSQDVQSQI TSASLADSQA FSRQDFPDNS GGTSSSNVDF DNSNMLQNSS WQQVAPRVRT YTKVQKTGSV GRSIDVSSFK NYEELCSAIE CMFGLDGLLN NPKRSGWKLV YVDYENDVLL IGDDPWDANI QGTNAPITEG SHAR // ID B9H6F5_POPTR Unreviewed; 456 AA. AC B9H6F5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE94257.1}; GN ORFNames=POPTR_0005s18090g {ECO:0000313|EMBL:EEE94257.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE94257.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE94257.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000341; EEE94257.1; -; Genomic_DNA. DR RefSeq; XP_002307261.1; XM_002307225.2. DR EnsemblPlants; POPTR_0005s18090.1; POPTR_0005s18090.1; POPTR_0005s18090. DR GeneID; 7489729; -. DR Gramene; POPTR_0005s18090.1; POPTR_0005s18090.1; POPTR_0005s18090. DR KEGG; pop:POPTR_0005s18090g; -. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR HOGENOM; HOG000082939; -. DR InParanoid; B9H6F5; -. DR OMA; YLEARFE; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006729; Linkage group LGV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 105 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 406 440 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 456 AA; 51341 MW; DDFA45776ABCDCD2 CRC64; MSGRVKKEVE ETDFIKPLLF NKEQLKSVKD GKQKSPMEAT EKHLKIKRRY SDPKLKFVIS GHAGKCIWQN KAPVQRSTTV GDGKSSAMIR AEEVQSNLEP AFPSFVKSLV RSHVASCFWM GLPGTFCRAH LPSVDTTVTL QDECGKEFKM KYIAYKTGLS AGWRQFCVAH QLFEGDALVF QLTGSCTLKV YIIRANDLTE VDDSAEMKTA ACKSSKRKRP RSLPQAVVQK KNKKSGQLRL SVPQAGQPAE QSENDSEEVG SEVLEGFKLS LPAVHFKDIK SFEDFNILVD GLVLDSELSE DIRNKYYKLC CNQNAFLHDN LIKGVNFKLI AGIISETVNI ADAMRACTLT TSRDKFATWD KALKASELFG MNVGFLRARL SRLLSLAFDS EGATKTRRYL EARFERVLTE DEIKSLEAKL VELKEAYERY GANVERLKSK AEGYDLKFQE QVLAPW // ID B9H788_POPTR Unreviewed; 592 AA. AC B9H788; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0005s16320g {ECO:0000313|EMBL:EEE94405.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE94405.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE94405.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000341; EEE94405.2; -; Genomic_DNA. DR RefSeq; XP_002307409.2; XM_002307373.2. DR STRING; 3694.POPTR_0005s16320.1; -. DR EnsemblPlants; POPTR_0005s16320.1; POPTR_0005s16320.1; POPTR_0005s16320. DR GeneID; 7460924; -. DR Gramene; POPTR_0005s16320.1; POPTR_0005s16320.1; POPTR_0005s16320. DR KEGG; pop:POPTR_0005s16320g; -. DR eggNOG; ENOG410IJN8; Eukaryota. DR eggNOG; ENOG410ZJKK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9H788; -. DR OMA; AGDINHR; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000006729; Linkage group LGV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 592 AA; 65319 MW; E6B2BE0C217E7B77 CRC64; MPQLTELSRV DPRIWRACAG SSVQIPTINS RVYYFPQGHL EQSSSSTAPH PPFLSNLALS KPLISCQISA VDFLADPVTD EVFIRLLLLP LNNHSCNLPL SFLEPSRSEG GGVNDVDDDE NKILAFAKIL TPSDANNGGG FSVPRFCADS IFPPLNYQAE PPVQTLTVTD IHGISWDFRH IYRGTPRRHL LTTGWSKFVN NKKLIAGDSV VFMRNLKGEM FIGVRRAVRL NNSARWREQI AGGGGEGKVK VEEGFSMSGR GRLSQEAVAE AVEMAAKGLP FDVVYYPRAG WYSDFVVRAE AVEAALGVFW TAGMRVKMAM ETEDSSRMTW FQGTVSGTGL PDSGAWRGSP WRMLQITWDE PEVLQNAKRV SPWQVEFVAT TPQLQAAFPP MKKLRYPNDS RFLTDGELFF PMSDLTNSTM GHTNASMLNY STFPAGMQGA RQDPFSTFGL SNFISENAPQ VFSDRAFGNN LVPKMKRMPS EMNIGSLQSE NLSPESQSSA YSFGIGFVGN RGFNPKKVGI NSIQLFGKII HMDQPVENGF DDVGFMDDSS KCCNETEGVD ALELSLTSSY TELLNRIDAQ CQRASPVEAC PT // ID B9H868_POPTR Unreviewed; 907 AA. AC B9H868; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0005s22930g {ECO:0000313|EMBL:EEE94570.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE94570.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE94570.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000341; EEE94570.2; -; Genomic_DNA. DR RefSeq; XP_002307574.2; XM_002307538.2. DR GeneID; 7464667; -. DR KEGG; pop:POPTR_0005s22930g; -. DR InParanoid; B9H868; -. DR Proteomes; UP000006729; Linkage group LGV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 774 858 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 907 AA; 100065 MW; B789053A6665E4BB CRC64; MRLSSSSSST GFNQQTPEGD KKCLNSELWH ACAGPLVSLP HVGSRVVYFP QGHSEQVAAS TNKEVDAHIP NYPSLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSQDD QKDAYLLPAE LGTASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPT LDYSQTPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTFM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLVKYIK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSAFPMRLKR PWPSGLPSFH GLQDGDLNIN SPMMWLQGGV GDLGVQSLNF QSFGVAPWIQ PRFDTSMPAL QPEMYQTMAA AALQEMRTVE SSKLASQSHL QFQQSQNVSN GPAALIQRQM LQQSNLQHAL LQNFQENQAS TQAQFLQQHL QHRNQYTGQQ LQQHQPQLQQ VQQPKQLNEL SAPQQIPNVI SALPHLTSVA PSQSPSLQPI SSQCQQQAFS EPLGNSIAAS DVSSMHSVIG SLSQDGGSHL LNSNGSNPVI SPALLSKRAA IDPQLSSGAA HCALPQVEQL RTTQSTVSDL ATLLAPFSGR EYSTYQGAND PQNNLLFGVN IDSSTFMLQH GIPNLRNIGT ENDPLSMPFA ASTFTSATGS DIPLNSDMTA SSCVDESGFL QSSENVDQVN PSTRTFVKVH KSGSYGRSLD ISKFSSYDEL RSELARLFCL EGLLEDPQRS GWQLVFGDRE NDVLLLGDDP WQEFVNNVWY IKILSPLEVQ QMGKEGLSPA ASVPSQKLSN SNSDGHMNTQ GFRNSSNGIA SMGSLDY // ID B9HAS5_POPTR Unreviewed; 294 AA. AC B9HAS5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE91918.2}; GN ORFNames=POPTR_0006s20040g {ECO:0000313|EMBL:EEE91918.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE91918.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE91918.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; EEE91918.2; -; Genomic_DNA. DR RefSeq; XP_002308395.2; XM_002308359.2. DR GeneID; 7465952; -. DR KEGG; pop:POPTR_0006s20040g; -. DR eggNOG; ENOG410IWEF; Eukaryota. DR eggNOG; ENOG410YI8X; LUCA. DR InParanoid; B9HAS5; -. DR KO; K09287; -. DR OMA; MAFDSAS; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 101 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 150 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 101 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 150 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 33396 MW; ACE732801A735B55 CRC64; MEEETVSLIL NAETSVIEEL SDSNSSTHPF PPNKRARSGS NVSASRFKGV VPQPNGHWGC QIYANHQRIW LGTFKSEREA AMAYDSAAIK LRSGDSRRNF PPTDITVQEP KFQSYYSIEV VLAMIKDGTY QSKFADFIRT CSQSVETALM MPQMMLGDVG KLNRLVIPKK YAIKYFPSAE EDEAADKVVD VMLAFYDKSM KLWKFRYCYW KSSQSYVFTR GWNRFVKEKK LKANDSIVFW LCESGETVDS AAQTFQMIDV SNCENISNIA ESSNQSIASK YSQEERRGRQ NGAS // ID B9HDI7_POPTR Unreviewed; 880 AA. AC B9HDI7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE92705.2}; GN ORFNames=POPTR_0006s10880g {ECO:0000313|EMBL:EEE92705.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE92705.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE92705.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; EEE92705.2; -; Genomic_DNA. DR RefSeq; XP_002309182.2; XM_002309146.2. DR STRING; 3694.POPTR_0006s10880.1; -. DR EnsemblPlants; POPTR_0006s10880.1; POPTR_0006s10880.1; POPTR_0006s10880. DR GeneID; 7468088; -. DR Gramene; POPTR_0006s10880.1; POPTR_0006s10880.1; POPTR_0006s10880. DR KEGG; pop:POPTR_0006s10880g; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; B9HDI7; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 288 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 554 604 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 288 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 880 AA; 95768 MW; A57F13928AE15FFB CRC64; MASSSSSIKS CMNATCGVST SNSGGWRKGW ALRSGDFAIL CDNCGSAYEQ SIFCEVFHSK DSGWRECTSC SKRLHCGCIA SRSLLELLDG GGVNCTSCSR TSGVGPMNGD EKPNGFGKPK VDTVGELHSA SADSQLAAET KLMQLGNCID GIGTRNLLQL QSDETNGTVT AAKDLYESLA QTNLSMSLGS SLGNPNLFPG GVVDERVPSK ASSPLQQGPR SRHLLPKPPK SALSMDANAG MVSQIRVARP PAEGRGRNQL LPRYWPRITD QELQQISGDP NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMKLQAGDTV TFSRMDPEGK LVMGFRKASN SIAMQQDTQP SAIPNGVPSS ESYFSGVFEN LPIISGYSGL LQSLKGSTDT HLSALSKHLH SASGDISWNK SEKQEDRTRD GLLLPSLMVP ERKRTRNIGS KSKRLLIDSL DAFELKLTWE EAQDLLRPAP SVKPSIVTIE DHDFEEYEEP PVFGKRSIFI VRSIGGQEQW AQCDSCSKWR RLPVDVLLPP KWTCVDNAWD QSRCSCSAPD ELAPRELENL LRLNKDFKKR KITSSHQPAQ ELESSGLDAL ANAAILGDVG EQSTTAVVAT TTKHPRHRPG CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQKTQHLVGP KDEAEIESSS KLASIPRDPS DNEARSGNEL ESKGQSNNLS NKLADSGKGH LDLNCHPDRE EDSQAGLSRM SMTSFLQVAT LPLDTYLKQN GLASLSEQQA SSASHVPPQT GENEGKINDD CQPATAAPEQ ESGGEENDEP GPDQSQNDPV // ID B9HE55_POPTR Unreviewed; 112 AA. AC B9HE55; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE90923.1}; GN ORFNames=POPTR_0007s02840g {ECO:0000313|EMBL:EEE90923.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE90923.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE90923.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000343; EEE90923.1; -; Genomic_DNA. DR RefSeq; XP_002310473.1; XM_002310437.2. DR EnsemblPlants; POPTR_0007s02840.1; POPTR_0007s02840.1; POPTR_0007s02840. DR GeneID; 7486052; -. DR Gramene; POPTR_0007s02840.1; POPTR_0007s02840.1; POPTR_0007s02840. DR KEGG; pop:POPTR_0007s02840g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9HE55; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 112 AA; 12804 MW; 2D95124C3CAF4861 CRC64; MEIELVNKKL TTTDIKSCLV YPTANLRAFQ MVQGENAIRF NARDPTGRVW EFKLCTRNHG RYKKPVIRGD WLDYVREKGL TVNDSIILTM VADAENGGSY NIRVEPNTEL AI // ID B9HEF5_POPTR Unreviewed; 227 AA. AC B9HEF5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE90622.1}; GN ORFNames=POPTR_0007s11870g {ECO:0000313|EMBL:EEE90622.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE90622.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE90622.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000343; EEE90622.1; -; Genomic_DNA. DR RefSeq; XP_002310172.1; XM_002310136.1. DR EnsemblPlants; POPTR_0007s11870.1; POPTR_0007s11870.1; POPTR_0007s11870. DR GeneID; 7477988; -. DR Gramene; POPTR_0007s11870.1; POPTR_0007s11870.1; POPTR_0007s11870. DR KEGG; pop:POPTR_0007s11870g; -. DR InParanoid; B9HEF5; -. DR OMA; WEMFIAY; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000006729; Linkage group LGVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 25699 MW; CC8C131A3317C136 CRC64; MASCSKRDNN GSLFTPKKTH FIRIILSDIM KNQKIAIPRR FLRKHGESLS KSAVIKVPSA ATWKVEFLKH KDEVSFAKGW EMFIAYYSID YGDFLVFEHE WNSLFTVFII DKSFTEVGYP WNNTDAAESN QEDKLEDHED DDDDDASVEF IDISSGSQET GKGTKGKEKL GCSRNSEEYE GDHGGRPAEN KCHPSGTPLS AARDSPGFYF TWTAKCTTKS AIKRKEE // ID B9HF60_POPTR Unreviewed; 150 AA. AC B9HF60; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE90396.1}; GN ORFNames=POPTR_0007s04810g {ECO:0000313|EMBL:EEE90396.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE90396.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE90396.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000343; EEE90396.1; -; Genomic_DNA. DR RefSeq; XP_002309946.1; XM_002309910.1. DR EnsemblPlants; POPTR_0007s04810.1; POPTR_0007s04810.1; POPTR_0007s04810. DR GeneID; 7490186; -. DR Gramene; POPTR_0007s04810.1; POPTR_0007s04810.1; POPTR_0007s04810. DR KEGG; pop:POPTR_0007s04810g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9HF60; -. DR OMA; VISSSWV; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 133 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 150 AA; 16890 MW; 7D8D5EB03AADC69F CRC64; METKNPCRLN LLLKIAPEMA SRSEILVFSK ELTKTDVRKR MSIPTNKLPH LPQFQGACHA VVLEVEDERG QVWNMRCSIR KRKYLKPVIS SSWVAFARSK NLGIGDKIFF YRGLNDEDGP SGVKYKIKVQ KATKVFGAIV GYGSPVHAAI // ID B9HHH5_POPTR Unreviewed; 477 AA. AC B9HHH5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE91180.2}; GN ORFNames=POPTR_0007s11170g {ECO:0000313|EMBL:EEE91180.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE91180.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE91180.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000343; EEE91180.2; -; Genomic_DNA. DR RefSeq; XP_002310730.2; XM_002310694.2. DR EnsemblPlants; POPTR_0007s11170.1; POPTR_0007s11170.1; POPTR_0007s11170. DR GeneID; 7483124; -. DR Gramene; POPTR_0007s11170.1; POPTR_0007s11170.1; POPTR_0007s11170. DR KEGG; pop:POPTR_0007s11170g; -. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR HOGENOM; HOG000082939; -. DR InParanoid; B9HHH5; -. DR OMA; FWMGLPV; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006729; Linkage group LGVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 200 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 200 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 420 468 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 477 AA; 53845 MW; 0A1D54229976A3AC CRC64; MSGRVKKEVE ETDLIKQQPF HEENRKYVED GDGKQKSPME TTAKRLKIKR RYSDSKLKFV ISGQAGKCIC CRQNRAPVER SNTVGETRSS ALIRAEEVQS NLEPAFPSFV KSLVRSHVAS CFWMGLPGQF CRAHLPHVDA TVTLQDECGK EFKMKYIAYK TGLSAGWRQF CVAHRLFEGD VLVFQLIESC TFKVYVIRAN DLTEVDGALG LLNLDAQIKQ NIADNAERGN TASKSSKRKR PRSLPLAIVQ KKNKKSGQPR PSVLQAGQPA EQSENDSEEV GSEVLEGFKL SLPAVQFKDI KSFEDFNILV DGLLLDSELS EDIRNKYYKL CCSQNAFLHD NLIKGVNLKL IAGIISETVN IADAMRACTL NTSRDEFATW DKALKASELF GMNVGFLRSK LGLLLSLAFD SEGATKTRRY IEARFKRVRT EDEIRNLEAK LVELKETYER YGADVERLKS KAEGYELKFQ EQVLAPW // ID B9HIZ2_POPTR Unreviewed; 369 AA. AC B9HIZ2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 63. DE SubName: Full=DNA-binding protein RAV2 {ECO:0000313|EMBL:EEE88805.2}; GN ORFNames=POPTR_0008s11600g {ECO:0000313|EMBL:EEE88805.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE88805.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE88805.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000344; EEE88805.2; -; Genomic_DNA. DR RefSeq; XP_002311438.2; XM_002311402.2. DR EnsemblPlants; POPTR_0008s11600.1; POPTR_0008s11600.1; POPTR_0008s11600. DR GeneID; 7483931; -. DR Gramene; POPTR_0008s11600.1; POPTR_0008s11600.1; POPTR_0008s11600. DR KEGG; pop:POPTR_0008s11600g; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR InParanoid; B9HIZ2; -. DR KO; K09287; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006729; Linkage group LGVIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:EEE88805.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 205 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 205 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 369 AA; 41368 MW; 3FE7ABFCC9CD86A0 CRC64; MDGSCVDEST TSSTDNSISI TPTSLTPSPP PATTTKSPPE SLCRVGSGNS VILDLELGVE AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAARAYDT AAQRFRGRDA VTNFKQVNET EDDEIEAAFL ITHSKAEIVD MLRKHTYSDE LEQSKRNQRS NNGVNGKQYK NTANYGSNSY DHGCGRVLKA REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQSTSSCS TKGVLLNLED MSGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDIV CFQRSTGPDK QLYIDWKARS GSNQVQPVQP IQMVRLFGVN IFNVPGMENG CNGKRSVREM ELLSLDHQYS KKQRIIGAL // ID B9HLK7_POPTR Unreviewed; 708 AA. AC B9HLK7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 65. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0008s03890g {ECO:0000313|EMBL:EEE88456.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE88456.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE88456.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000344; EEE88456.2; -; Genomic_DNA. DR RefSeq; XP_002311089.2; XM_002311053.2. DR STRING; 3694.POPTR_0008s03890.1; -. DR EnsemblPlants; POPTR_0008s03890.1; POPTR_0008s03890.1; POPTR_0008s03890. DR GeneID; 7494951; -. DR Gramene; POPTR_0008s03890.1; POPTR_0008s03890.1; POPTR_0008s03890. DR KEGG; pop:POPTR_0008s03890g; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9HLK7; -. DR OMA; IIAKDMH; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006729; Linkage group LGVIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 622 702 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 78310 MW; E032B38A3B19E10C CRC64; MFEAKLRDGY TQVLQIPKLH SGPMIREFQV MNPPKEQMRV AEKCLDSQLW HACAGSMVQM PAVNSKVFYF PQGHAEHAQG SVDFGHFQIP ALIPCKVSAI KYMAEPETDE VYAKIRLTPS SNSDLMFGDG CGEDSDDRLP NGIESQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG NECSSGWNSF GGYSGFLRED ESKLTRRNGN GDMKGKVKPE SVIEAASLAA NGQPFEVVYY PRASTPEFCV RASAVRTAMH IQWCPGIRFK MAFETEDSSR ISWFMGTISS VQFADPIRWP NSPWRLLQVA WDEPDLLQNV KRVSPWLAEL VSNMPAIHLS PFSPPRKKLR LPQPPDFPLL GQIPMPSFTG IPLRSNSPLC CVSDNIPAGI QGARHAQFEL SSSDLHFNKL QSGLFPVDFQ RRDHAASPSR ISSGNFMGNT KKSENISCLL TMGNSSQSLK ESSETKTPHF VLFGQLIVTD QQSSQSCSGD TNANSSSDGN LGKASSDGSG SALQQNGPME NSSDERSTWY KDHQKTDLGL ETDHCKVFLE SEDIGRTLDL SVLGSYEELH RKLASMFGIE SSEMLSNVLY RDAAGATKHA GDEPFSEFLK TARRLTILSY ASRDNFGR // ID B9HQ88_POPTR Unreviewed; 690 AA. AC B9HQ88; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 64. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0009s02020g {ECO:0000313|EMBL:EEE87463.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE87463.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE87463.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; EEE87463.2; -; Genomic_DNA. DR RefSeq; XP_002313508.2; XM_002313472.2. DR STRING; 3694.POPTR_0009s02020.1; -. DR EnsemblPlants; POPTR_0009s02020.1; POPTR_0009s02020.1; POPTR_0009s02020. DR GeneID; 7491129; -. DR Gramene; POPTR_0009s02020.1; POPTR_0009s02020.1; POPTR_0009s02020. DR KEGG; pop:POPTR_0009s02020g; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9HQ88; -. DR OMA; RNDNISC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 688 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 690 AA; 76532 MW; AF05DCF97B05A1D0 CRC64; MKETEKKSLD PQLWQACAGS MVHIPPLNST VFYFPQGHAE HSQSPVNFPQ RIPSLILCRV ATVKFLADPD TDEVYAKIGF VPLPNTDLDF AHDRGLCGNG NDGDSCPDKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSSDPPL QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RAENGDLRVG IRRSKRGIGI GSRPESSLTT GWNSNNATCA IPYDGFSLFV KEDEMRNGGM KGRGRVKPEE VLEAAGLAAN GKPFQVVYYP RSSTPEFCVK ASSVRAAMRI GWCSGMRFKM AFETEDSSRI SWFMGTVTSV QVADPVRWPN SPWRLLQVAW DEPDLLQNVK RVSPWLVELV SNMPVIHLSP FSPPRKKSRF PQQLGFPLDL QFQLPSFSGN PLGPSSPLCC LSDNTPAGIQ GARHAQFGIS LSDIQFNNKQ QSGMFLSSLQ RFNPHSRNSE TYLTGHTNSN ENISCLLTMG NSNPNLEKSD NVKKHQFLLF GQPILIEQHI SHSCSTDAVS QVINERNSSD ESSSKEKISD VLLSAPGKKI SQVKSCGTGF SWHQSLHNTS EIGKDTGPCK VFLESEDVGW TLDLSALCSY EELHGKLANM FGIERSEMSS HVLYRDATGS VKQIGDEPFS VFMKTAKRLT ILMNQPSTES WEVRLRGEKK // ID B9HQB3_POPTR Unreviewed; 713 AA. AC B9HQB3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 65. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0009s01700g {ECO:0000313|EMBL:EEE87476.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE87476.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE87476.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; EEE87476.1; -; Genomic_DNA. DR RefSeq; XP_002313521.1; XM_002313485.2. DR STRING; 3694.POPTR_0009s01700.1; -. DR EnsemblPlants; POPTR_0009s01700.1; POPTR_0009s01700.1; POPTR_0009s01700. DR GeneID; 7491142; -. DR Gramene; POPTR_0009s01700.1; POPTR_0009s01700.1; POPTR_0009s01700. DR KEGG; pop:POPTR_0009s01700g; -. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9HQB3; -. DR OMA; QSHANPV; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 677 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 713 AA; 79085 MW; 10F8A3CAAB97A21B CRC64; MEIDLNHPVT EVEKNSFCTN GDSSCSSNSS SSPVSSSIYL ELWHACAGPL TSLPKKGNVV VYFPQGHLEQ LASSSPFSHR DMPNFDLHPQ IFCKVVNVQL LANRENDEVY TRLTLLPQPE VVGQDLEGKE LQELGVDGEG DDASPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP SLDYKQQRPS QELLAKDLHG VEWRFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RGEGGELRLG IRRAARPRNG LPDSVTGKQN SLPSALSLVS NAISTKSVFT VSYSPRATHA VFVVPYQKYI KSITNAVCIG TRFKMRFEMD DSPERRCSGV VTGTADLDPY KWPNSKWRCL MVRWDEDVIS DHQERVSPWE IDASVSLPPL IIQSSPRLKK LRTGLQAAPP DKPIAGGGGF LDFKESVRSS KVLQGQENVG LLSPVYRCQE ICSLSSVGAL GKPNTGRSSF QMYPGPRPAF YPVAAESLRS MYFPYGDVYK NGQDPRTQSY AIFSRENAHF NTSSIQTCVV REEVRKPNQS SEYKTQESIS AAPALCANLR NQKDDFFNGN ATGCKLFGFS LNAETSPNSQ NTSKRSCTKV HKQGSLVGRA IDLSRLNGYS DLLNELERLF SMEGLLRNPE EGWRILYTDS ENDVMVVGDD PWLEFCNVAT KIHIYTQEEV EKMTLFGSSP VIMEASKSSS VGQPDCSPTV IRV // ID B9HRU8_POPTR Unreviewed; 330 AA. AC B9HRU8; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE87785.2}; GN ORFNames=POPTR_0009s11170g {ECO:0000313|EMBL:EEE87785.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE87785.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE87785.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; EEE87785.2; -; Genomic_DNA. DR RefSeq; XP_002313830.2; XM_002313794.2. DR EnsemblPlants; POPTR_0009s11170.2; POPTR_0009s11170.2; POPTR_0009s11170. DR GeneID; 7457510; -. DR Gramene; POPTR_0009s11170.2; POPTR_0009s11170.2; POPTR_0009s11170. DR KEGG; pop:POPTR_0009s11170g; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR HOGENOM; HOG000005864; -. DR InParanoid; B9HRU8; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 37867 MW; 8CB4B2020AEDBCEC CRC64; MPRPFFQKLI LSSTIREKRL RIPDNFVKKF GHDISSFVRL IVPGGHVSRI GLIKADDKLW FHDGWQQFVE RFAIHVGYFL IFRYEGNAIF NVHIFNLPTS EINYHSNSLS GKRYLAFEEL DNDENAENSG IPPPQLIVNK SYNPPSLQNL FSGSKLNNCI NWSGEDTMRL TKGSNISQVA NESARNVGAH YNELYNSQDE VKLYSPDGET PKPKKRGRKR LKADPNEQQL SSPHDDDSEM RFRFYESASA RKRTVTAEER ERAMNAAKAY APDNPYCRVV LRPSYLYRGC IMGSLYFSYL MGNSGLFDAF TGEAELNLVR DGMNSHWRIT // ID B9HRZ4_POPTR Unreviewed; 476 AA. AC B9HRZ4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE87065.1}; GN ORFNames=POPTR_0009s10620g {ECO:0000313|EMBL:EEE87065.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE87065.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE87065.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; EEE87065.1; -; Genomic_DNA. DR RefSeq; XP_002313110.1; XM_002313074.2. DR EnsemblPlants; POPTR_0009s10620.1; POPTR_0009s10620.1; POPTR_0009s10620. DR GeneID; 7490026; -. DR Gramene; POPTR_0009s10620.1; POPTR_0009s10620.1; POPTR_0009s10620. DR KEGG; pop:POPTR_0009s10620g; -. DR HOGENOM; HOG000082939; -. DR InParanoid; B9HRZ4; -. DR OMA; FNEHEKS; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 419 474 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 476 AA; 54102 MW; F43536BA3DEC7BCF CRC64; MDAKEDQNTS PKPQLPISNP VPLNTYPRIR RRKPNMSKIK LTQIHEKSPE PEYKTGHELV LYDKSGESRE PRSRKRKKDA FSVFYDSTET KSPAMELAEE IRTNLEAAYP SFAKTLVRSN VTVGFWMHLP MRFCKMHLPK NDTTVFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH EGDVLVFHLV KPSRFKVYIV KGNGSSQGDG EFGIPSSGAY GKEIISEPAE KDVKSSKKAE PLKLLPVGHQ EENNQENGLI AVENNKGYVA DQSENESEDR ASETLRVIKL SGPTVDFNNV KGIENFRILL NGFAIDSELS EHHRTKYYEL CRSQSSFLHS NLLNSINHKL AVEIIIGTVD ISEGIRSSKL SSSQADYGVW DKTLKGFELL GMKVGFLRER LSRLMSLALE SEEAMESECR EVRLEQARVD EEMKSLELRL LKLKETRERL DDEMEILKEN AEKHELTFQE AVNAPW // ID B9HRZ5_POPTR Unreviewed; 439 AA. AC B9HRZ5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE87066.1}; GN ORFNames=POPTR_0009s10610g {ECO:0000313|EMBL:EEE87066.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE87066.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE87066.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; EEE87066.1; -; Genomic_DNA. DR RefSeq; XP_002313111.1; XM_002313075.2. DR EnsemblPlants; POPTR_0009s10610.1; POPTR_0009s10610.1; POPTR_0009s10610. DR GeneID; 7490027; -. DR Gramene; POPTR_0009s10610.1; POPTR_0009s10610.1; POPTR_0009s10610. DR KEGG; pop:POPTR_0009s10610g; -. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR HOGENOM; HOG000082939; -. DR InParanoid; B9HRZ5; -. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 165 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 165 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 375 409 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 439 AA; 49700 MW; 184838E9773EA29B CRC64; MAVLQVNKQK EKRGRAPKVN GIKKVPSNLS VKSESHTSKR AKIDDLYDNE EVKSDVMMRA KEIQSNLSPE LPSIIKHMLP SNVTRVFWLH FPKRFCEAYL PKEDTMIVLE DERGKIYETK YLARKVGLSA GWRGFSIDHK IMEGDVLIFH LVEPAKFKVY IVRVNDSEEV DGALALLKLE AGVKQMGPIN EAVHVEKLSK VSEEMEDLDF EHLSLDNPEK NNEKNVKLAC LTTFGPISDL YEYESEDLGS ETTDGIRLSK SAVDFKEVKC FEDFDILVNG LVISSELSKP LQTKYYKLCC SQNSFLHDHL LDGLNCKLVV GMLSETINIA DAIRASKLTN SLESFAIWEK TLKAFEGLGM NVGFLLARLG QLMHLSAKSK RYEEATLQRV NAKEEMTTLK AKLLEVKDTI NRLGVEIEKL VVDSENLELK FQEVAKAPW // ID B9HRZ6_POPTR Unreviewed; 270 AA. AC B9HRZ6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE87067.2}; GN ORFNames=POPTR_0009s10590g {ECO:0000313|EMBL:EEE87067.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE87067.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE87067.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; EEE87067.2; -; Genomic_DNA. DR RefSeq; XP_002313112.2; XM_002313076.2. DR STRING; 3694.POPTR_0009s10590.1; -. DR EnsemblPlants; POPTR_0009s10590.1; POPTR_0009s10590.1; POPTR_0009s10590. DR GeneID; 7490028; -. DR Gramene; POPTR_0009s10590.1; POPTR_0009s10590.1; POPTR_0009s10590. DR KEGG; pop:POPTR_0009s10590g; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; B9HRZ6; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 30924 MW; 510C11C42FD71AF5 CRC64; MMKSKQTYEE TRQKRMEENK KRMEELNLTK LSQSLLSKPS PVKKAKPRIS RSPVASTPVR RSNRVADKPP VSYKEVPIEP LARPRRSYQR RDLLNRVYAS DEVRIYAIHR ADQIQSSLGA DFPSFVKPML QSHVTGGFWL GLPVPFCKAH LPHYDEMITL EDENGDESET KYLAGKTGLS GGWRGFAIDH DLVDGDALVF QLVSPTKFKV YIVRAYDSED NEDQENTKDD EVKDNTEDKE DEGKSEENGK VSDATDLNRR YSKRIRASKK // ID B9HSR3_POPTR Unreviewed; 341 AA. AC B9HSR3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF01339.1}; GN ORFNames=POPTR_0010s19890g {ECO:0000313|EMBL:EEF01339.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF01339.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF01339.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000346; EEF01339.1; -; Genomic_DNA. DR RefSeq; XP_002315168.1; XM_002315132.1. DR EnsemblPlants; POPTR_0010s19890.1; POPTR_0010s19890.1; POPTR_0010s19890. DR GeneID; 7490337; -. DR Gramene; POPTR_0010s19890.1; POPTR_0010s19890.1; POPTR_0010s19890. DR KEGG; pop:POPTR_0010s19890g; -. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR HOGENOM; HOG000005864; -. DR InParanoid; B9HSR3; -. DR OMA; FHELEDN; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000006729; Linkage group LGX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 238 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 238 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 39337 MW; E96D809DE96F3DD2 CRC64; MQRIPRKFVE KFGEGLSDIA KVAVPNGNEW QVGITKEHNN IWFDEGWQEF VEHHSIGSGY LVVFRYRGDS NFSVLIFDMT ACEIQYRRMR PTGGEGMNDA EKCSFYDEDE MKDEGSVESL DTHYCRALKS RVFNLNAREG GSSKGRGPSS ETTVKNEMTY IDDTSESRRG KSLKKHRMSA PHGETKAKKS KSKSRLGENE LLPECEAIEF VPRGFAKASE KSKRAIHAAR MFKPKSPSFM VMLRRYNFYN HFLYVPLEFA QRHLSDAPRC IKLQVSDGRE WPIQINRNQC RYLSISKGWN EFSQENNLKE GDVCVFELIN KEKFVLKVAI FHELEDNVPS D // ID B9HUF7_POPTR Unreviewed; 706 AA. AC B9HUF7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 65. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0010s23000g {ECO:0000313|EMBL:EEF02541.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF02541.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF02541.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000346; EEF02541.2; -; Genomic_DNA. DR RefSeq; XP_002316370.2; XM_002316334.2. DR STRING; 3694.POPTR_0010s23000.1; -. DR EnsemblPlants; POPTR_0010s23000.1; POPTR_0010s23000.1; POPTR_0010s23000. DR GeneID; 7468418; -. DR Gramene; POPTR_0010s23000.1; POPTR_0010s23000.1; POPTR_0010s23000. DR KEGG; pop:POPTR_0010s23000g; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9HUF7; -. DR OMA; NDHEYRE; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006729; Linkage group LGX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 620 700 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 706 AA; 77688 MW; 8E54FEB142F8ABE0 CRC64; MFEAKLRDCS SQILQIPKLQ SGPMIREFAV MNSQKEKMRV AEKCLDSQLW HACAGSMVQM PAVNSKVFYF PQGHAEHAQG SVEFGHFQIP ALIPCKVSAI KYMADPETDE VYAKIRLIPL NNSDLMLGHG CGEDNDDRLH SGNESQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGN ECSSGWNSFA GYSGFFREDE SKLMRRNGNG DMKGKVKAES VIEAASLAAN GQPFEAVYYP RASTPEFCVK ASAVRSAIQI QWCPGMRFKM AFETEDSSRI SWFMGTISSV QVADPIRWPN SPWRLLQVAW DEPDLLHNVK RVSPWLVELV SNMPAIHLSP FSPPRKKLRL PQPPDFPLLG QIPMPSFTGN PLRSNSPLCC VSDNIPAGIQ GARHAQFGLS SSDLHFNKLQ AGLFPVDFQR LDRAAPPSRI SNSNFVGNTQ NSESISCLLT MGNSSQSMKG SDTKTPHILL FGQLIVTDQQ SSQSCSGDTN ANSSSDGHPG KAISDGSGSA SQQNGPLENS SGGRCPWYKD YQKTDPGLET GHCKVFMESE DVGRTLDLSV LGSYEELHRK LVNMFGIESS EMLSNVLYRN AAGTTKHAGD EPFSEFLKTA RRLTILSDAS SDNVGR // ID B9HWL7_POPTR Unreviewed; 401 AA. AC B9HWL7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 65. DE SubName: Full=DNA-binding protein RAV2 {ECO:0000313|EMBL:EEF02129.2}; GN ORFNames=POPTR_0010s13930g {ECO:0000313|EMBL:EEF02129.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF02129.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF02129.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000346; EEF02129.2; -; Genomic_DNA. DR RefSeq; XP_002315958.2; XM_002315922.2. DR EnsemblPlants; POPTR_0010s13930.1; POPTR_0010s13930.1; POPTR_0010s13930. DR GeneID; 7466917; -. DR Gramene; POPTR_0010s13930.1; POPTR_0010s13930.1; POPTR_0010s13930. DR KEGG; pop:POPTR_0010s13930g; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR InParanoid; B9HWL7; -. DR KO; K09287; -. DR OMA; CIDDNTS; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006729; Linkage group LGX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:EEF02129.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 160 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 240 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 105 160 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 240 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 44955 MW; 6097D522B7F0ED2E CRC64; MPLSLVNKNT SSISLSFSFS LAPPSFTTTT RKKNMDGSCI DESTTSSADN SISITPTSLP PFPPTATTTK SPPESLCRVR SGNSSVILDS ESGVEAESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEENEAA RAYDIAAQRF RGRDAVTNFK QVNETEDDEI EAAFLNAHSK AEIVDMLRKH TYSDELEQSK RNHRSNNGGN GKQYKNTANY ENNSYDHGCG RVLKAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS TSSNSTKGVL LNLEDVSGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVCFQRS TGPDNQLYID WKARCGSNQV QPVQMVRLFG VNIFNVPGME NGCDGKRSIR DMELLSIDRQ YSKKQRIVGA L // ID B9I195_POPTR Unreviewed; 914 AA. AC B9I195; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0011s09450g {ECO:0000313|EMBL:EEE97385.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE97385.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE97385.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000347; EEE97385.1; -; Genomic_DNA. DR RefSeq; XP_002316773.1; XM_002316737.2. DR STRING; 3694.POPTR_0011s09450.1; -. DR EnsemblPlants; POPTR_0011s09450.1; POPTR_0011s09450.1; POPTR_0011s09450. DR GeneID; 7471871; -. DR Gramene; POPTR_0011s09450.1; POPTR_0011s09450.1; POPTR_0011s09450. DR KEGG; pop:POPTR_0011s09450g; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9I195; -. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006729; Linkage group LGXI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 778 862 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 914 AA; 101188 MW; 7D01989C0AF03A45 CRC64; MRHSSASFNP QTQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFAQGHS EQVAASTNKE VDARIPNYPS LPPQLICQLH NVTMHADVET DEVYAQLTLQ PLSPQEQKDA YLPADLGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLIAGDS VLFIWNEKNQ LLLGIKRATR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYLKAVYYT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDVARWPNS LWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSTFP LRLKRPWTPG LHSFHGKLLY TILRALMDGI KDDDLGMNSS LMWLRGDGDR GIQSLNLQGM GVAPWMQPRV DTSMLGLQND VYQTMATAAF QEMRALDPSK SSAASLLQFQ QHQNLPIRNA ALMQPLMLQQ SPSQQAFLQG VQENKHQSQP QSQTPTRSHL IHQLQHQHSL DSPEQQQPLL QQQHLADQQI PNVVSAISQY ASATQSLTPP LQAISLCQQH SFSDSNGNLV TSPVVSPLQS LLGSFPQDET SHLFNFPRTN PLTTSSGWPS KRAAVDPLIS SVAPQCMMSQ VEQLGPPQTS ISPSSVSLLP FPGRECPTEQ DGGTDPQSHL LFGVSIEPSS LLMQNGLSSL RGVGSDSDST TVPFSSNYMS IAGTNFSLNP AMAPSSCIDE SGFLQSMENV GQGNPPSRTF VKVYKSGSFG RSLDITKFSN YNELRSELAF MFGLEGQLED PLRSGWQLVF IDRENDVLLL GDGPWPEFVN SVWCIKILSP QEVQQMGKRG LELLNSVPIQ RLSNGSCDDY VNRQDSQNLS NAITSVGSLD CREI // ID B9I3L4_POPTR Unreviewed; 289 AA. AC B9I3L4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE96919.1}; GN ORFNames=POPTR_0012s09470g {ECO:0000313|EMBL:EEE96919.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE96919.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE96919.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; EEE96919.1; -; Genomic_DNA. DR RefSeq; XP_002318699.1; XM_002318663.2. DR EnsemblPlants; POPTR_0012s09470.1; POPTR_0012s09470.1; POPTR_0012s09470. DR GeneID; 7484453; -. DR Gramene; POPTR_0012s09470.1; POPTR_0012s09470.1; POPTR_0012s09470. DR KEGG; pop:POPTR_0012s09470g; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; B9I3L4; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 27 47 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 45 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 32169 MW; 50F63AE26EA63908 CRC64; MTSKEEACPM CTQNCLMTHG NRTNSRTLVS SFFKVLIGGP FLTVLYFPPK FAPMVSSLNG QETFLEDSSG QRWKVKVSIL NDSFVLQEGW SAFASDHGLE LGDFIIFNYI MGSHFEVHIY DKSACERLDF SERRNQKERT GNNTQNFNTE YGQCLAKDKG SMNVHGSSTP NLAGEEICRG QSKLKNDVLK AKMVAKNTST NKKETRAEKI VSKAECVEES RDMINRELGK KHEDYGETLV DLSNWGLSKA NLGIEGSKKT RAGTKKLSHH AGASFKSQKE AGLGSKDTR // ID B9I3Y9_POPTR Unreviewed; 854 AA. AC B9I3Y9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 64. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0012s10790g {ECO:0000313|EMBL:EEE96987.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE96987.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE96987.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; EEE96987.1; -; Genomic_DNA. DR RefSeq; XP_002318767.1; XM_002318731.2. DR STRING; 3694.POPTR_0012s10790.1; -. DR EnsemblPlants; POPTR_0012s10790.1; POPTR_0012s10790.1; POPTR_0012s10790. DR GeneID; 7484881; -. DR Gramene; POPTR_0012s10790.1; POPTR_0012s10790.1; POPTR_0012s10790. DR KEGG; pop:POPTR_0012s10790g; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9I3Y9; -. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 728 812 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 94838 MW; E231D3B8604D399D CRC64; MASSEISAKA NSGNIKGGGE SFSSGYSEAM EGQKGHSTHP SSARDAETAL YNELWHACAG PLVTVPREGD HVFYFPQGHL EQVEASTNQV ADQQMPLYDL PPKILCRVVN VQLKAEPDTD EVFAQVTLLP LHNQDENASE KEPPPPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD LHGSEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QSNVPSSVIS SHSMHLGVLA TAWHAVSTGT MFTVYYKPRT SPAEFIVPFD QYMESVKSNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPSRWKDSKW RCLKVRWDET STIPRPDRVS PWKIEPALAP PALNPLPMPR PKRPRANMVP SSPDSSVLTR EGSSKVTADP SSASGFSRVL RGQEFSTLRG NFEEGNESDV AEKSVLWPPS ADDEKIDVLS SSRRFGSEWW ISSARQEPTY TDLLSGFGAN ADSSHGFGAP FVDQTAGGAN PMKKHLSDQG QFNLLASPWS IMSPGLSLKL SESNSRVPIQ GSSDVTYQSR ENIRYSAFSE YPMLHGLRVE QSHGNCMMPP PPSHFDNHAH TRELIPKPKL VQEHNTGKSL DGNCKLFGIP LKISKPATPE QAGPTNMVNE PMGHTQPASH QLTSESDQKS EHSRGSKLAD ENENEKPLQV GHMRMRDSHG KAQNSSTRSC TKVHKQGIAL GRSVDLTRFN NYDELIAELD RLFEFNGELL APQKNWLIVY TDDEDDMMLV GDDPWQEFVG MVRKIVIYTR EEVQRIKPGT LNSRVNENPS GVEGEDAKEA KHLPLPSASS PLSC // ID B9I598_POPTR Unreviewed; 118 AA. AC B9I598; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE96624.1}; GN ORFNames=POPTR_0012s02010g {ECO:0000313|EMBL:EEE96624.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE96624.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE96624.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; EEE96624.1; -; Genomic_DNA. DR RefSeq; XP_002318404.1; XM_002318368.1. DR EnsemblPlants; POPTR_0012s02010.1; POPTR_0012s02010.1; POPTR_0012s02010. DR GeneID; 7489843; -. DR Gramene; POPTR_0012s02010.1; POPTR_0012s02010.1; POPTR_0012s02010. DR KEGG; pop:POPTR_0012s02010g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9I598; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 118 AA; 13221 MW; 342C4D851B7CBCE7 CRC64; MASFSKILSK TDIKKRLTVP IKFLKSLPSF DGGHAVKFEA RDEGGETWAF QCSVRRRGHP KPVLTRGWKA FINSKKLKTG DKVSFIKCKN RATAKTSYRV RAENEIKIFG ASIGHAPL // ID B9I5A0_POPTR Unreviewed; 124 AA. AC B9I5A0; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE96625.2}; GN ORFNames=POPTR_0012s02040g {ECO:0000313|EMBL:EEE96625.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE96625.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE96625.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; EEE96625.2; -; Genomic_DNA. DR RefSeq; XP_002318405.2; XM_002318369.2. DR EnsemblPlants; POPTR_0012s02040.1; POPTR_0012s02040.1; POPTR_0012s02040. DR GeneID; 7489844; -. DR Gramene; POPTR_0012s02040.1; POPTR_0012s02040.1; POPTR_0012s02040. DR KEGG; pop:POPTR_0012s02040g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9I5A0; -. DR OMA; FYSAEEQ; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 124 AA; 14187 MW; D654EC7292009B00 CRC64; MAEFSKLLTK TDIQKRLSLP TKFFKPLPSL KGSHVRDFPA IDESGFVWTF QCSTRKKGHP KPVLSKGWLA FVRHKELKVG DRVKFFKEKD RSGPATPFYR VEAEKEIKIF GAIFGYSPIV APFP // ID B9I5A2_POPTR Unreviewed; 124 AA. AC B9I5A2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE96627.2}; GN ORFNames=POPTR_0012s02070g {ECO:0000313|EMBL:EEE96627.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE96627.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE96627.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; EEE96627.2; -; Genomic_DNA. DR RefSeq; XP_002318407.2; XM_002318371.2. DR EnsemblPlants; POPTR_0012s02070.1; POPTR_0012s02070.1; POPTR_0012s02070. DR GeneID; 7489846; -. DR Gramene; POPTR_0012s02070.1; POPTR_0012s02070.1; POPTR_0012s02070. DR KEGG; pop:POPTR_0012s02070g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9I5A2; -. DR OMA; IDESGFG; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 124 AA; 14144 MW; 4834BBF62EB5D318 CRC64; MAEFSKLLTK TDIHKRLSLP TKFFKPLPSL KGSHVRDFPA IDESGFGWTF QCSTRKKGHP KPVLSKGWLA FVRHKELKAG DRVKFFKEKD QSGTATPFYR IEAEKEIKIF GVIFGYSPIV APFP // ID B9I5A4_POPTR Unreviewed; 157 AA. AC B9I5A4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE96629.1}; GN ORFNames=POPTR_0012s02080g {ECO:0000313|EMBL:EEE96629.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE96629.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE96629.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; EEE96629.1; -; Genomic_DNA. DR RefSeq; XP_002318409.1; XM_002318373.1. DR EnsemblPlants; POPTR_0012s02080.1; POPTR_0012s02080.1; POPTR_0012s02080. DR GeneID; 7489848; -. DR Gramene; POPTR_0012s02080.1; POPTR_0012s02080.1; POPTR_0012s02080. DR KEGG; pop:POPTR_0012s02080g; -. DR InParanoid; B9I5A4; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 116 135 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 157 AA; 17278 MW; 23A137D6683575F3 CRC64; MENFAKILSK TDVQKRLSVP TKYLSSLPSF NGDRAVEFQA MDESGCVWAF KCSTRRKRHP KPVLTKGWLA FVACKNLKAG DKVAFYKLKN KCRTATHVCK LLTVSACVQA AKKLSLLLLI CGKAAVPFIA FPLLIKDASA AGYAFPFGHG CKNLIYS // ID B9I5A6_POPTR Unreviewed; 120 AA. AC B9I5A6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE96631.1}; GN ORFNames=POPTR_0012s02100g {ECO:0000313|EMBL:EEE96631.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE96631.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE96631.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; EEE96631.1; -; Genomic_DNA. DR RefSeq; XP_002318411.1; XM_002318375.2. DR EnsemblPlants; POPTR_0012s02100.1; POPTR_0012s02100.1; POPTR_0012s02100. DR GeneID; 7462991; -. DR Gramene; POPTR_0012s02100.1; POPTR_0012s02100.1; POPTR_0012s02100. DR KEGG; pop:POPTR_0012s02100g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9I5A6; -. DR OMA; PFVASKN; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 120 AA; 13672 MW; CFD69FD2376F2348 CRC64; MASFSKILRP TDIYKRLSVP TKYLKSLPSF EGGHAVDFQA VDDKGHVWTF KCSVRKKGRY PKPVLAKGWL PFVASKNLKA GDKVKFYREK NKSAAKRVYK VQVAKEVRIF GVIFGYAPIF // ID B9I6X8_POPTR Unreviewed; 774 AA. AC B9I6X8; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE95893.2}; GN ORFNames=POPTR_0013s15330g {ECO:0000313|EMBL:EEE95893.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE95893.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE95893.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000349; EEE95893.2; -; Genomic_DNA. DR RefSeq; XP_002319970.2; XM_002319934.2. DR STRING; 3694.POPTR_0013s15330.1; -. DR EnsemblPlants; POPTR_0013s15330.1; POPTR_0013s15330.1; POPTR_0013s15330. DR GeneID; 7465177; -. DR Gramene; POPTR_0013s15330.1; POPTR_0013s15330.1; POPTR_0013s15330. DR KEGG; pop:POPTR_0013s15330g; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; B9I6X8; -. DR OMA; CNKPIHC; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000006729; Linkage group LGXIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 231 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 479 529 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 231 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 774 AA; 85386 MW; E48505DB48340CB3 CRC64; MQSDEIPNGF SFLARNNAGD SESIPAENTV AGNSNDEGGL AQLCRLLEAN EPSLLHPSKR ANTNGGLGQF RQEEIMHAIG DIGTGFSNVT QPSIGSPKFS KPNNTSSLLD LRDMHSSLSQ PSLSMALGAP SGTTNFVTFP DGAVEGKEQR KTPSSFQQGQ RSRPILPKPS KPGLSVSSEN NIGAASELRI ARPPAEGRGK NQLLPRYWPR ITDQELQQLS GDLNSNIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPAI SQSEGIPLRI QDIKGREWTF QFRFWPNNNS RMYVLEGVTP CIHSMQLKAG DTITFSRIDP GGKLVMGFRK STNNDEDTQA SGLLDGTASG ETSFSGTVET LLTDPYQNAL SKRLKLADGD IGWNNSENHR GRINGDLLQQ TTAPTEKKRT QNIGPKSKRL FMHSEDAMEL RLTWEEAQDL LRPPPSVKPT IVTIEDHEFE EYDEPPVFGK RTIFTSRSSG GQEQWAQCDD CSKWRNLPVD ALLPPKWTCS ENAWDSSRCT CSAPEEMTSK DLDNVLGVSK DFKKRRNLRS QKRFQERESS GLDALATVAV LGDNLDDSGD PSVGATTKHP RHRLGCTCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MLRKKKRQSE REAEISQKDN MDHKEESEMN GTMSHEVLHI NNPDTEGNQS QRQIEKPETS AGQIDLNCHP NSEDTSLEIP GLSTMNLVDT ANSPLDNYIK QNGLSSFVWD HQGGPAQKSG ESLRRLSDEA FLASIGWTHE SIRD // ID B9I9X2_POPTR Unreviewed; 724 AA. AC B9I9X2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 05-JUL-2017, entry version 56. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0014s12980g {ECO:0000313|EMBL:EEE98683.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE98683.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE98683.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; EEE98683.2; -; Genomic_DNA. DR RefSeq; XP_002320368.2; XM_002320332.2. DR GeneID; 7457969; -. DR KEGG; pop:POPTR_0014s12980g; -. DR eggNOG; ENOG410JAV5; Eukaryota. DR eggNOG; ENOG41113VQ; LUCA. DR InParanoid; B9I9X2; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 625 709 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 724 AA; 80935 MW; 3E87078E2650ACFB CRC64; MGKKRSVAGE AKTSRSHEVG VLKTTKCFNN GLPPRNPQEN KDDLYTELWH ACAGPLVYVP RAGDKVFYFP QGHMEQVAAR MNEEGKMEMP IYDLPYKILC KVVHVELKAE AGTDEVFARI TLLPVAEEDE LSSNKDGKSL PLHRKTCARS FTKKLTPSDT KTHGGFSVPK RHADQCLPPL DKSQQPPVQE LLAKDLHGFE WCFKHIYRGQ PKRHLITSGW STFVSSKRLV AGDSFIFLRG ESGELRVGVR RAMKLENNLS ANILSSHSMQ LGILSSASHA ITTGSMFTIY FHPWTSPAEF IIPYDQYMKS AEIDYSAGTR FRMLFEGEEC AEQRFEGTVV GTEDVDHIRW PNSEWRILKV KWDAASEPFV HQERVSPWNI EPIEPIRKKH ASRLHLHKME CIADKSLPRF LISVKEGLLH GSDEHANESL LEVLQGQEDR DTSANQFGAF KPPPVPHLTS PPNPDWNRSP IGRDNQLQFW MGGPIYPCPS NTVSFPGGNI ARLGIPNSRH STFNSYGVHD NAVGSRSLSV PNVSHNSGSQ KWRGSELKHA NEVPLAAPHR YMLFGVNLVS NSPELPSSQV ATSVVNESHN YVPVTSQSSV SEPSKSTSGV NSEKQCKNCC SAAIRSCTKV LKYGTVPGRS VDLTQFDGYN ELICELDLMF DFQGSLIDET SGWYVVYSDN EGDMMQIKDC PWQEFQLTVR RIFISPKEDI GKLNPLSPNP SPSG // ID B9IBY2_POPTR Unreviewed; 120 AA. AC B9IBY2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE98368.1}; GN ORFNames=POPTR_0014s06340g {ECO:0000313|EMBL:EEE98368.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE98368.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE98368.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; EEE98368.1; -; Genomic_DNA. DR RefSeq; XP_002320053.1; XM_002320017.2. DR EnsemblPlants; POPTR_0014s06340.1; POPTR_0014s06340.1; POPTR_0014s06340. DR GeneID; 7488891; -. DR Gramene; POPTR_0014s06340.1; POPTR_0014s06340.1; POPTR_0014s06340. DR KEGG; pop:POPTR_0014s06340g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IBY2; -. DR OMA; GEVWIFR; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 120 AA; 13431 MW; 7748DF70CE1513AC CRC64; MAIFSKLLTK TDIGTRLSVP TKSLKSLPCF GRGHAIDFHV QDAQSGEVWI FRCVIRKKSH PKPALCKNWR KFVSSKRLSV GDKIIFSTLA EDQASTGGAQ YKIEVKRQTK IFGVSLGYFP // ID B9IBY3_POPTR Unreviewed; 114 AA. AC B9IBY3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEE98369.1}; GN ORFNames=POPTR_0014s06350g {ECO:0000313|EMBL:EEE98369.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEE98369.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEE98369.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; EEE98369.1; -; Genomic_DNA. DR RefSeq; XP_002320054.1; XM_002320018.1. DR EnsemblPlants; POPTR_0014s06350.1; POPTR_0014s06350.1; POPTR_0014s06350. DR GeneID; 7488892; -. DR Gramene; POPTR_0014s06350.1; POPTR_0014s06350.1; POPTR_0014s06350. DR KEGG; pop:POPTR_0014s06350g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IBY3; -. DR OMA; KMEANVA; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 102 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 114 AA; 13085 MW; 7E9437CC20F6B1F1 CRC64; MAIFSKSLTK TDIEKRLSFP TKCLRSLPCF GRGHAVDFHV MDECGQVWTF RCTIRKKNHP KPVISKDWSK FVSSKHLDVG DKITFSKLEN KVSCAFYKIE VKKPVKLFGV NVGY // ID B9ICS0_POPTR Unreviewed; 125 AA. AC B9ICS0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05953.2}; DE Flags: Fragment; GN ORFNames=POPTR_0015s14860g {ECO:0000313|EMBL:EEF05953.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05953.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05953.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05953.2; -; Genomic_DNA. DR RefSeq; XP_002321826.2; XM_002321790.2. DR EnsemblPlants; POPTR_0015s14860.1; POPTR_0015s14860.1; POPTR_0015s14860. DR GeneID; 7476740; -. DR Gramene; POPTR_0015s14860.1; POPTR_0015s14860.1; POPTR_0015s14860. DR KEGG; pop:POPTR_0015s14860g; -. DR OMA; MERCEKE; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EEF05953.2}. SQ SEQUENCE 125 AA; 13749 MW; F5DE6BF3F5DA7179 CRC64; TTAEPSIREP SIKVISKSLS RTDIEERLSV PASCLHFFPM PEGVREIEFQ AIDTLGKLWT FKLSCRSEGP PKPVIAGQWL SFVKDKGVKV GDTVTISQQN NGTNEGQYSI SVSRKLFNVL ATLPA // ID B9IDT1_POPTR Unreviewed; 241 AA. AC B9IDT1; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05548.2}; DE Flags: Fragment; GN ORFNames=POPTR_0015s01730g {ECO:0000313|EMBL:EEF05548.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05548.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05548.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05548.2; -; Genomic_DNA. DR RefSeq; XP_002321421.2; XM_002321385.2. DR STRING; 3694.POPTR_0015s01730.1; -. DR EnsemblPlants; POPTR_0015s01730.1; POPTR_0015s01730.1; POPTR_0015s01730. DR GeneID; 7464552; -. DR Gramene; POPTR_0015s01730.1; POPTR_0015s01730.1; POPTR_0015s01730. DR KEGG; pop:POPTR_0015s01730g; -. DR eggNOG; KOG0274; Eukaryota. DR eggNOG; ENOG410XRWX; LUCA. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDT1; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 195 220 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 2 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 241 241 {ECO:0000313|EMBL:EEF05548.2}. SQ SEQUENCE 241 AA; 26419 MW; C351EDE146DCD66E CRC64; MARFSKVLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ AVDGSGRVWT FRCSIRRNGH PKPVFSKGWL AYVHSKSLKV GDKVQFLKEK NDAGAKMHAY EIRAEKEIKI FGNGTITNKR VSHRLGGGQS VNVTLNQHHH QQNQEVCHHW RAGKCNGFPC PSLHRELPAP PPHASVNEGG GGGAKRGTQV YALFVGNYLL FAGAQLHFAL ISLLFVLGFL PVADDSGKTM CVCVSIITKQ H // ID B9IDT2_POPTR Unreviewed; 121 AA. AC B9IDT2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05549.2}; GN ORFNames=POPTR_0015s01750g {ECO:0000313|EMBL:EEF05549.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05549.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05549.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05549.2; -; Genomic_DNA. DR RefSeq; XP_002321422.2; XM_002321386.2. DR EnsemblPlants; POPTR_0015s01750.1; POPTR_0015s01750.1; POPTR_0015s01750. DR GeneID; 7475203; -. DR Gramene; POPTR_0015s01750.1; POPTR_0015s01750.1; POPTR_0015s01750. DR KEGG; pop:POPTR_0015s01750g; -. DR InParanoid; B9IDT2; -. DR OMA; REHDHEN; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 121 AA; 13402 MW; FBD761C7039DEEC7 CRC64; MARFSKVLRK TDIKKRLSVP TGFLSSLPSF NGGGHAVDFQ AVDGSGRVWA FRCSIRKKGH PKPVISKGWL AFVHSKSLKV GDKVQFLREK NEAGAKTHAY EIRAEKEIKI FGAVFGYAPI I // ID B9IDT4_POPTR Unreviewed; 149 AA. AC B9IDT4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05550.2}; GN ORFNames=POPTR_0015s01770g {ECO:0000313|EMBL:EEF05550.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05550.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05550.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05550.2; -; Genomic_DNA. DR RefSeq; XP_002321423.2; XM_002321387.2. DR EnsemblPlants; POPTR_0015s01770.1; POPTR_0015s01770.1; POPTR_0015s01770. DR GeneID; 7464553; -. DR Gramene; POPTR_0015s01770.1; POPTR_0015s01770.1; POPTR_0015s01770. DR KEGG; pop:POPTR_0015s01770g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDT4; -. DR OMA; PNNDKHR; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 149 AA; 16506 MW; 54AE5220D23457ED CRC64; MARFSKGLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ AVDGSGRVWA FRCSIRKKGH PKPVISKGWL AFVASKSLKG GDKVQFLKEK NEAGAKTHAY EIRAGKEIKI FGDVLGYAPI TYRGPNNDKH RLILNFRGPN NDKHRLTLT // ID B9IDT5_POPTR Unreviewed; 233 AA. AC B9IDT5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05551.1}; GN ORFNames=POPTR_0015s01780g {ECO:0000313|EMBL:EEF05551.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05551.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05551.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05551.1; -; Genomic_DNA. DR RefSeq; XP_002321424.1; XM_002321388.1. DR EnsemblPlants; POPTR_0015s01780.1; POPTR_0015s01780.1; POPTR_0015s01780. DR GeneID; 7475205; -. DR Gramene; POPTR_0015s01780.1; POPTR_0015s01780.1; POPTR_0015s01780. DR KEGG; pop:POPTR_0015s01780g; -. DR HOGENOM; HOG000210312; -. DR InParanoid; B9IDT5; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 233 AA; 25853 MW; A408F8A2D1390C05 CRC64; MARFSKVLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ TVDGSGRVWT FRCSIRMKGH PKPVISKGWL AFVASKNLKV GDKVHFLKKK NDAGAKTHAY EIRAEKEIKI FAKPTDDRGE DAPSRQKKNE RGVPQRRKTT TEATASTITN KRVSHRLGGG QSVNDMLNQH HYQQNPKVCH HWRAGKCNTF PCPSVVHREL PASPPHASVN GGGVGTKRGF SGNDSSSFSW RRE // ID B9IDT6_POPTR Unreviewed; 121 AA. AC B9IDT6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05552.1}; GN ORFNames=POPTR_0015s01790g {ECO:0000313|EMBL:EEF05552.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05552.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05552.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05552.1; -; Genomic_DNA. DR RefSeq; XP_002321425.1; XM_002321389.1. DR EnsemblPlants; POPTR_0015s01790.1; POPTR_0015s01790.1; POPTR_0015s01790. DR GeneID; 7475206; -. DR Gramene; POPTR_0015s01790.1; POPTR_0015s01790.1; POPTR_0015s01790. DR KEGG; pop:POPTR_0015s01790g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDT6; -. DR OMA; EGAHELE; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 121 AA; 13340 MW; 1CD766D38B4000DE CRC64; MARFSKALRK TDIKKRLSVP TGFLSSLPSF NGGGHAVDFQ AVDGSGRVWA FRCSIRKKGH PKPVISKGWL AFVASKNLKV GDKVTFLREK NEAGAKTHAY EIRAEKEIRI FGAVFGYATI I // ID B9IDT9_POPTR Unreviewed; 119 AA. AC B9IDT9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05554.1}; GN ORFNames=POPTR_0015s01810g {ECO:0000313|EMBL:EEF05554.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05554.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05554.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05554.1; -; Genomic_DNA. DR RefSeq; XP_002321427.1; XM_002321391.1. DR EnsemblPlants; POPTR_0015s01810.1; POPTR_0015s01810.1; POPTR_0015s01810. DR GeneID; 7475208; -. DR Gramene; POPTR_0015s01810.1; POPTR_0015s01810.1; POPTR_0015s01810. DR KEGG; pop:POPTR_0015s01810g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDT9; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13279 MW; EE0A76D5B6116656 CRC64; METFSKVLSK TDIKKRLAVP TNYLKSLPSL NGGCSVDFKA IDAKGKVWTF KCSIRKKGHP KPVISKGWLA FVGSKKLKAG YKIRFYKENN KVSTATHVFR VQAEKEIKIF GAVLGYAPI // ID B9IDU0_POPTR Unreviewed; 119 AA. AC B9IDU0; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05555.1}; GN ORFNames=POPTR_0015s01820g {ECO:0000313|EMBL:EEF05555.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05555.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05555.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05555.1; -; Genomic_DNA. DR RefSeq; XP_002321428.1; XM_002321392.1. DR EnsemblPlants; POPTR_0015s01820.1; POPTR_0015s01820.1; POPTR_0015s01820. DR GeneID; 7475209; -. DR Gramene; POPTR_0015s01820.1; POPTR_0015s01820.1; POPTR_0015s01820. DR KEGG; pop:POPTR_0015s01820g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDU0; -. DR OMA; MASCSKI; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13628 MW; F4E2BAFA5E617C60 CRC64; MASCSKILTK TDTEKRLSVP SKFLKSLPPF KGGHAVFFQA KEERGKVWTF QCSTRKKGPY QKPVLSRGWL AFARKKKLEV GDKIEFYKAR DQETEKPFYG VRVEREIKIL GAVIGCMNP // ID B9IDU1_POPTR Unreviewed; 119 AA. AC B9IDU1; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05556.1}; GN ORFNames=POPTR_0015s01830g {ECO:0000313|EMBL:EEF05556.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05556.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05556.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05556.1; -; Genomic_DNA. DR RefSeq; XP_002321429.1; XM_002321393.1. DR EnsemblPlants; POPTR_0015s01830.1; POPTR_0015s01830.1; POPTR_0015s01830. DR GeneID; 7475210; -. DR Gramene; POPTR_0015s01830.1; POPTR_0015s01830.1; POPTR_0015s01830. DR KEGG; pop:POPTR_0015s01830g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDU1; -. DR OMA; WLAFANK; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13704 MW; 15BD4847404B1B5A CRC64; MAIFSKILTK TDAEKRLSVP IKFLKSLPPF KSGHAVDFQA KDERGKVWTF QCSTRKKGRY KKPVLSKGWL AFANKKKLKV GDKIVFYKGR HQETEKPFYG VRVEREIKIL GAVIGYMNP // ID B9IDU2_POPTR Unreviewed; 119 AA. AC B9IDU2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05557.2}; GN ORFNames=POPTR_0015s01840g {ECO:0000313|EMBL:EEF05557.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05557.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05557.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05557.2; -; Genomic_DNA. DR RefSeq; XP_002321430.2; XM_002321394.2. DR EnsemblPlants; POPTR_0015s01840.1; POPTR_0015s01840.1; POPTR_0015s01840. DR GeneID; 7475211; -. DR Gramene; POPTR_0015s01840.1; POPTR_0015s01840.1; POPTR_0015s01840. DR KEGG; pop:POPTR_0015s01840g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDU2; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13609 MW; 2E5CDA54292BAA63 CRC64; MAEFEKILRE TDTKKRLSVP IRFLRSLPPF KGSHAVTFEA TDEKGKAWTF QCSIRKTGQY PKPVLTRGWV AFVKSKKLQV GDKVRFIKRK NRATAAISYK VRAEKAIKIF GAPFGHARI // ID B9IDU9_POPTR Unreviewed; 126 AA. AC B9IDU9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05561.1}; GN ORFNames=POPTR_0015s01900g {ECO:0000313|EMBL:EEF05561.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05561.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05561.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF05561.1; -; Genomic_DNA. DR RefSeq; XP_002321434.1; XM_002321398.1. DR EnsemblPlants; POPTR_0015s01900.1; POPTR_0015s01900.1; POPTR_0015s01900. DR GeneID; 7453825; -. DR Gramene; POPTR_0015s01900.1; POPTR_0015s01900.1; POPTR_0015s01900. DR KEGG; pop:POPTR_0015s01900g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9IDU9; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 126 AA; 14358 MW; 40F9C581B9EAA600 CRC64; MAAFSKILRE TDTKKRLSVP IRFLRSLPPF KLGSHAVTFE ATDEKGEAWP FQCSIRKRGH PKPVLTKGWV AFVKSKKLQV GDKVRFIKRK NRATAAISYI VRAEKAIKIF GVTFGYARID LVHFPN // ID B9IFK3_POPTR Unreviewed; 852 AA. AC B9IFK3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0015s11660g {ECO:0000313|EMBL:EEF06427.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF06427.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF06427.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; EEF06427.1; -; Genomic_DNA. DR RefSeq; XP_002322300.1; XM_002322264.2. DR STRING; 3694.POPTR_0015s11660.1; -. DR EnsemblPlants; POPTR_0015s11660.1; POPTR_0015s11660.1; POPTR_0015s11660. DR GeneID; 7456643; -. DR Gramene; POPTR_0015s11660.1; POPTR_0015s11660.1; POPTR_0015s11660. DR KEGG; pop:POPTR_0015s11660g; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9IFK3; -. DR OMA; HESAYTD; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 725 809 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 852 AA; 94816 MW; DDD0C2EB49874601 CRC64; MASSEISAKA NSGNIRGGGE SFTSGYSEAM EGQKNHSTHP SSARVVDAET ALYNELWHAC AGPLVTVPRE GDRVFYFPQG HIEQVEASTN QVADQQMPLY NLLPKILCRV VNVQLKAEPD TDEVFAQVTL LPEHNQDESV LEKEPPPPPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGNEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNVPSSV ISSHSMHLGV LATAWHAVST GTLFTVYYKP RTSPAEFIVP FDQYMESVKN NYSIGMRFKM RFEGEEAPEQ RFTGTIVGIE DADPGRWKNS KWRCLKVRWD ETSTMPRPER VSPWKIEPAL APPALNPLPL PRPKRPRANM VPSSPDSSVL TRDGSFKVTA DPPSASGFSR VLQGQEFSTL RGTFAESNES NAAEKSVMWP SSADDEKIDV LSTSRRFGSE RWMSSARHEP TCTDLLSGFG TNSDSFHGFG APFVDQTAVA ANPTKKHLSD QGQFNLLASP WSIMSSGLLL KLSESNTKVP VQGSDVTYQA RANVFSEYPV LQGHRVEQSH KNWMMHPPPS HFDNHANSRE LMPKPVLMQE HDSGKSLEGN CKLFGIPLKI SKPVAPEAAG TTITMNEPLS HIQPVSHQLT FESDQKSEQS KGSKMTDENE NEKPFQAGHL RTKDNHGKAQ NGSTRSCTKV HKQGIALGRS VDLAKFNNYD ELIAELDRLF EFNGELMAPQ KNWLIVYTDD EDDMMLVGDD PWQEFVGMVR KIVIYTKEEA QKIKPGALNS KGVENPMDME GEDDAKEAKH LPLPSACSPM NC // ID B9IFN4_POPTR Unreviewed; 700 AA. AC B9IFN4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0016s09150g {ECO:0000313|EMBL:EEF05229.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05229.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05229.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000352; EEF05229.1; -; Genomic_DNA. DR RefSeq; XP_002323468.1; XM_002323432.2. DR STRING; 3694.POPTR_0016s09150.1; -. DR EnsemblPlants; POPTR_0016s09150.1; POPTR_0016s09150.1; POPTR_0016s09150. DR GeneID; 7467624; -. DR Gramene; POPTR_0016s09150.1; POPTR_0016s09150.1; POPTR_0016s09150. DR KEGG; pop:POPTR_0016s09150g; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9IFN4; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006729; Linkage group LGXVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 619 697 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 78045 MW; 9D2A8ADC654CA4E0 CRC64; MITFMEAKEI LKEEADKCLD SQLWHACAGG MVQMPAVNSK VFYFPQGHAE HACEPVDFRN LPGASHTLCR VSAIKFMADP ETDEVFAKIR LVPINSNEID LDDQEVAVNG EKEAAHDNKK PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYTADPP VQTLLAKDVH GETWKFRHIY RGTPRRHLLT TGWSPFVNHK KLVAGDSVVF LRAENGDLCV GVRRAKRAIS GGPESLWNPA LGNLVVPYGG FGAFSREDEH KMVKNGRGNG NGSKSNESLM GRGKVRAESV IQAAVLAANG LPFETVYYPR ANTPEFFVKA SLVKTVMQIR WCSGMRFKMA FETEDSSRIS WFMGTVCSVQ DADPLCWPGS PWRLLQVTWD EPDLLQNVKR VSPWLVELAS HMSAIHLSPF SSPRKKLRLP QHPDFPIDGQ FPMPIFSGNL LQPSSPFGFL PNNIPAGMQG ARHAHYGLPL SDLNLNKLHT GLLRAGFPPL LDHTASLTKA SNIQTIQKPI LSEGVSCELT MSHSTQTSKR ADDVKIPQLV LFGQRIVAEQ YISRSCSDNT GSPVLARNSC FEGKLDKMAK FSEGSVSTLP HRGLSKHSSC EGLQWNKNNH RKSEQSLEIG HCKVFLESED VGRTLDLQLL ESYEELYRKL ADMFGLRNSE KFSNLLYRDD NGITKHIGEE PFSNFSKTAR RLTIVTRFRQ // ID B9IGT0_POPTR Unreviewed; 917 AA. AC B9IGT0; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF05430.1}; GN ORFNames=POPTR_0016s14350g {ECO:0000313|EMBL:EEF05430.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF05430.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF05430.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000352; EEF05430.1; -; Genomic_DNA. DR RefSeq; XP_002323669.1; XM_002323633.2. DR STRING; 3694.POPTR_0016s14350.1; -. DR EnsemblPlants; POPTR_0016s14350.1; POPTR_0016s14350.1; POPTR_0016s14350. DR GeneID; 7482592; -. DR Gramene; POPTR_0016s14350.1; POPTR_0016s14350.1; POPTR_0016s14350. DR KEGG; pop:POPTR_0016s14350g; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; B9IGT0; -. DR OMA; ANNGSKM; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000006729; Linkage group LGXVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 327 428 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 592 642 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 327 428 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 917 AA; 99721 MW; 7966894BBC8E353A CRC64; MASSSIKSCM NATCGVSTSS SGGWRKGWAL RSGDFAILCD NCGSAYEQSV FCEVFHSKDS GWRECTSCGK RLHCGCIASK SLLELLDGGG VNCTSCSKSA GVSSVNGDEK TNGFGMSKVD DAGELQSASA DNQLTTETKL MQLGNCIDRI ATRNLLQLQS SETDGSYRKM KQEDIIPPVG EIASTSFLNF NHISNASSQT AKPEIHKTTA AKDLYESLAQ TNLSISLGSS LGNPNPFPGG VVDERVLAKA SSPLQQGPRS RHLLPKPPKP ALVLDANAGM VSQIRVARPP AEGRGRNQLL PRYWPRITDQ ELQQISGDPN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MKLQAGDTVT FSRMDPEGKL VMGFRKASNS IAMQDTQPSA IPNGVPSSES YFSGVFENLP IISGYSGLLH SLKGSTDTHL SALSKHLHSA SGDISWHKSE KQEARTRDGL LLPSLLAPER KRLRNIGSKS KRLLIDSLDA LELKVTWEEA QDLLRPEPSI KPSIVTIEDH DFEEYEEPPV FGKTSIFVVR SIGGQEQWAQ CDSCSKWRRL PIDVLLPPKW TCVDNAWDQS RCSCSAPDEL APRELENLLR LTKDFKKRRI TSSHRPAQEH ESSGLDALAN AAILGDAGEQ STTAVAATTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR IQHMSGPKDE ADVESSSKLA STPMDPSDNE ARSGNELESK SQTNNLSNKL ADSGKGHLDL NCHPGREEDS QAGLARMSMT SLLQVASLPL ETYLKQNGLV SLSEQQASSA SHVPPQAGEN GGRIDGDCQP ASVAQEQESG GEEDDEPGPD QSQTDLL // ID B9IMF3_POPTR Unreviewed; 549 AA. AC B9IMF3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 2. DT 07-JUN-2017, entry version 60. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF03704.2}; GN ORFNames=POPTR_0018s11780g {ECO:0000313|EMBL:EEF03704.2}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF03704.2, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF03704.2, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000354; EEF03704.2; -; Genomic_DNA. DR RefSeq; XP_002325139.2; XM_002325103.2. DR GeneID; 7489454; -. DR KEGG; pop:POPTR_0018s11780g; -. DR InParanoid; B9IMF3; -. DR KO; K09287; -. DR Proteomes; UP000006729; Linkage group LGXVIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008081; F:phosphoric diester hydrolase activity; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.20.20.190; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl. DR InterPro; IPR000909; PLipase_C_PInositol-sp_X_dom. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00388; PI-PLC-X; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF51695; SSF51695; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50007; PIPLC_X_DOMAIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 101 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 168 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 476 536 PI-PLC X-box. FT {ECO:0000259|PROSITE:PS50007}. FT DNA_BIND 46 101 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 168 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 549 AA; 62707 MW; D17C3594FEA0644C CRC64; MEDETVSLIS NGETSVVEEF SDSNSSTHPF PASKRARSGS NISASKFKGV VPLPNGHWGC QIYANHQRIW LGTFKSEKEA AMAYDSAAIK LRSGDSRRNF PLTDVTVEEP KFQSYFSTEV VLNMIKDGTY QCKFANFTRT CSQSVETELS LKLMMPQSNQ GLTCKQLFQK ELTPSDVGKL NRIVIPKKYA IKYFPHISES AEEVDGVMLA FYDKSMKLWK FRYCYWKSSQ SYVFTRGWNR FVKEKKLKAN DTISFSLCER GETVDSAAQT FNMIDVNNRE NSSSISELSS QSIASKVELQ LNPGPLIARD STVKKKERMR GANKRTQNAE KYDNNHLHQE LQNQFYLKEQ FPNSNDSHEE EEEEQEEDGK GGISRVKRMI KRVRIFMRTI SEKVGDGLDK KNERSNGNVN NDKRLSHQYH VRPEAKDRAS YMNIGTYKFG ANCKFNHPIR RKNQAQLLLL PPPPPLLLLE LLFGFVFSRH SLINPVDLLV CLRAIKNSAF QASEYPVVIT LVRPPTANLQ AKVAEMVTKT VGGMLYCPKI DQLQEFRYH // ID B9IN55_POPTR Unreviewed; 404 AA. AC B9IN55; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF03249.1}; GN ORFNames=POPTR_0018s13750g {ECO:0000313|EMBL:EEF03249.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF03249.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF03249.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000354; EEF03249.1; -; Genomic_DNA. DR RefSeq; XP_002324684.1; XM_002324648.1. DR EnsemblPlants; POPTR_0018s13750.1; POPTR_0018s13750.1; POPTR_0018s13750. DR GeneID; 7490488; -. DR Gramene; POPTR_0018s13750.1; POPTR_0018s13750.1; POPTR_0018s13750. DR KEGG; pop:POPTR_0018s13750g; -. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR HOGENOM; HOG000082939; -. DR InParanoid; B9IN55; -. DR OMA; MITETIN; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006729; Linkage group LGXVIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 340 402 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 404 AA; 45653 MW; 441306A71185A47B CRC64; MIRAIEIQAS ISSEFPSLIK YMQPSHVSGG FWLGLCKKFC DEHLPNEDTV IVLEDGNGKS SQTKYLAHKS GLSGGWRGFS IDHNLVEGDV LVFHLVKPTK FKVYVVKANS AEEVDGALAI LKFDSCIKQM NPCKSFLYSE DLCSLVKLQM AQIIKNIITS LLTVIVTDHA EAEMEYQDLE HLYPTNPEDN NTMPGISNIR LISDHSENES GDFGFEITDG IRMSETVVDF KEVRSFEDFD ILVNGLVINC ELSKHLQMKY YELCCSQKCF LHENFIEGLN CKLIAGIISE TINIADAIRA SKVTTSYDNF TTWEKTLKAF LGLGMKVDFL LARLEQLINL SAKSERHKKA RLEKDNAEDE MRILEAKISG VEETMNRLDV VVETLEVNAE NLELRFQELT KAPW // ID B9INC7_POPTR Unreviewed; 1047 AA. AC B9INC7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0018s07420g {ECO:0000313|EMBL:EEF03290.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF03290.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF03290.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000354; EEF03290.1; -; Genomic_DNA. DR RefSeq; XP_002324725.1; XM_002324689.2. DR STRING; 3694.POPTR_0018s07420.1; -. DR EnsemblPlants; POPTR_0018s07420.1; POPTR_0018s07420.1; POPTR_0018s07420. DR GeneID; 7467924; -. DR Gramene; POPTR_0018s07420.1; POPTR_0018s07420.1; POPTR_0018s07420. DR KEGG; pop:POPTR_0018s07420g; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9INC7; -. DR OMA; GTDMESA; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000006729; Linkage group LGXVIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 931 1024 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1047 AA; 117203 MW; 456A85A050889D15 CRC64; MKVPSNGFLP NSAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFVPSYPNL TSKLICMLHN VTLHADVETD EVYAQMTLQP VSKYDKEALL ASDLGQKQSR QPTEFFCKTL TASDTSTHGG FFVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRIFTGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSLIS SDSMHIGILA AAAHAAANNS PFTIFYNPSA SPSEFVIPFS KYNKAMYTQG SLGMRFRMMF TTEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TASERPNRVS IWEIEPVVTP FYICPPPFFR PKFPKQPGMP NDESDTENAF KRAVPWLGDE FGKKDAASSI FPGLSLVQWM SMQQNNQFQA AQSGFFPPMV PSNDLQKNLS TDDPSKLLNF QAPGLSAPSI QFNKTNSENQ VGQLRRPPMA WTQQQQLQQL LQTSINQQQP PYPQQPQPQL QHVVSPNQIP NQNFQKPFVY SQQQQQQQQQ LLASNIQSQS IPSPNRSSYQ LTSLPQDSQF HQQMEQQSNF SHRQQTQLQQ SPLLLLQQNP SQRVQPQPHQ QIQQLSQPDN SEQQLHLQLL QNLQQQQQQQ LLSPESLLLQ SQKLQQQQQT HQQNQQLHQS PLTQNQQPLG SNSFPTAAAL MRTQSFPMNQ LQGMQNATMA VRYHSSITDG EAPSCSTSPS TNNWQISPLN FLNRNQQAPA MLMGDSAIEP ASNLVQELQS KSEIHIKNEF PSLKGLDQLK YKGTVTDQLE ASSSGTSYCL DAGTIQQNFS APTFGLDGDV QSHPASNIDA LAPDTLLSRE YDSQKDLQNL LVNYGGTAQD INMELSTAAI SAQSFGVSNI PFKPDGSNDI AINDTGILNN GAWTNQNQRM RTYTKVQKRG SVGRSIDITC YKGYDELRHD LARMFGIEGQ LEDPQSSDWK LVYVDRENDI LLVGDDPWEE FMSCVQSIKI LSSAEVQQMS LDGDLGNVPA PNQACSGTDS GNVWRGQ // ID B9INL8_POPTR Unreviewed; 786 AA. AC B9INL8; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEF00022.1}; GN ORFNames=POPTR_0019s15070g {ECO:0000313|EMBL:EEF00022.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:EEF00022.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:EEF00022.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000355; EEF00022.1; -; Genomic_DNA. DR RefSeq; XP_002325640.1; XM_002325604.2. DR STRING; 3694.POPTR_0019s15070.1; -. DR EnsemblPlants; POPTR_0019s15070.1; POPTR_0019s15070.1; POPTR_0019s15070. DR GeneID; 7495326; -. DR Gramene; POPTR_0019s15070.1; POPTR_0019s15070.1; POPTR_0019s15070. DR KEGG; pop:POPTR_0019s15070g; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; B9INL8; -. DR OMA; MHSEDAL; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000006729; Linkage group LGXIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 516 566 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 286 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 786 AA; 87382 MW; CE77C5426549043E CRC64; MGTKICMNAS CQTTTTHEWK RGWPLRSGGH ALLCFNCGSA YEDSLFCDTF HSEEPGWREC NICTKRLHCG CIASKFLLEL LDYGGVGCSS CARSSRLHSR LNKLHATHVY GFEDFANANG CLGQFRQEEI RHAIGDIGTG FSNMTLPSVG SSKFTNPDNM SSLLDMRDMH CSLSEPSLSM ALGAPSGTTN FAPFPGGAVE GREQGKTPSS FQQGQRSRPI LPKPSKPGLL SSSENNKGSA SELRIARPPA EGRGKNQLLP RYWPRITDQE LQQLSGDLNS NIVPLFEKIL SASDAGRIGR LVLPKACAEA YFPPISQSEG IPLKIQDIKG REWTFQFRFW PNNNSRMYVL EGVTPCIQSM QLKAGDTITF SRIDPGGKLV MGFRKSTNNN EDIQIIKGSR DPDLNSLSEH LKLADGYIGW NNSENHGGGI NGDLLQQTTA PTEKKRTRNI GPKSKRLLMH SEDAMELRLT WEEAQDLLRP PPSVKPTIVT IEDHEFEEYD EPPVFGKRTI FTSRSPGRQE QWAQCDDCSK WRKLPVDALL PPKWTCSENA WDSSRCTCSV PEEMTPKDLD NLLRVSKDFK KRRILESQKR FQNCEPSGLD ALASAAVLGD NLDDSGEPSV GATTKHPRHR PGCTCIVCIQ PPSGKGKHKP TCTCNVCMTV KRRFKTLMLR KKKRQSEREA ETSQKDNMDR KESEANGTMK TSAGQIDLNC HPNREDMPLD MPGLSTMNLV DLANTPLDNY IKQNGLSSLV WDQEGGQAQH SGESLRRLSD EAFLASIGWA HESRRD // ID B9MV04_POPTR Unreviewed; 391 AA. AC B9MV04; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 57. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP53045.1}; GN ORFNames=POPTR_0014s05620g {ECO:0000313|EMBL:ERP53045.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP53045.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP53045.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP53045.1; -; Genomic_DNA. DR RefSeq; XP_006375248.1; XM_006375186.1. DR EnsemblPlants; POPTR_0014s05620.1; POPTR_0014s05620.1; POPTR_0014s05620. DR GeneID; 18105155; -. DR Gramene; POPTR_0014s05620.1; POPTR_0014s05620.1; POPTR_0014s05620. DR KEGG; pop:POPTR_0014s05620g; -. DR eggNOG; ENOG410JJ9I; Eukaryota. DR eggNOG; ENOG410ZGW8; LUCA. DR InParanoid; B9MV04; -. DR OMA; CAFELID; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 135 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 347 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 135 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 347 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44596 MW; 5014458138F5AE90 CRC64; MGSPFKGGNG SFMFNADKPH FFKIFFKKLL LMGSFLYQGI PKKFVRLYGK GLSNKALLEV PNGTVSEVEF FKSDGKIWLQ NGWKEFAEHY SLALGSLLVF EYKKSCHFHV LILDKTTMEI DYSFSMTDGD EEPDLEGEFQ QPRTEETDDD PIPKSFAQKY FKNDHGDAVL CVLDGRTWPV KYFVYPGNGK AKTQIRSGWN KFTWDNYLEV SDVCVFELTK CIEMSFKVIV VRANKDDSHR LAVANQAKPK RSVLIDIDPE FPRDGEDGTS SSHHKYGTKE KGRKSEEDDS LPPEKKIKNS LPHKMANNSR KDAGSGLKTK RLAPLSAIEK EKALRRAYAF KSENPFFFIA IQPAYVCSGA NMSIPFKFAD RYFKEKNGEV ILQVSKDPKL W // ID B9MZ57_POPTR Unreviewed; 708 AA. AC B9MZ57; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 65. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0004s22130g {ECO:0000313|EMBL:ERP62706.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62706.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62706.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62706.1; -; Genomic_DNA. DR RefSeq; XP_006384909.1; XM_006384847.1. DR STRING; 3694.POPTR_0004s22130.1; -. DR EnsemblPlants; POPTR_0004s22130.1; POPTR_0004s22130.1; POPTR_0004s22130. DR GeneID; 18098203; -. DR Gramene; POPTR_0004s22130.1; POPTR_0004s22130.1; POPTR_0004s22130. DR KEGG; pop:POPTR_0004s22130g; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9MZ57; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 594 672 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 78055 MW; 80AE2D9EFA851E69 CRC64; MKKTDKKSLD PQLWQACAGS MVQIPPLNTK VFYFPQGHAE HSQSPVDFPQ RIPSLVLCRV ASVKFLADPG TDEVFAKISL VPLPDADLDI SQDVDICGDG NDSNNAEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TLIAKDVHGE VWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGVGIG SGPESSPSHI GWNSNNATSA NPYGGFSLSV KEDEMRNGGV KGRGRVKSEE VLEAAGLAAN GNPFQVVYYP RASTPEFCVK ASSVRAAMRT CWCSGMRFKM AFETEDSSRI SWFMGTVASV QVADPDRWPN SPWRLLQVTW DEPDLLQTVK CVSPWLVELV SNMPVIHLSP FSPPRKKLRF PQQLDFPLDG QFQLPSFSGN PLGPSSPLCC LSDNTPAGIQ GARHAQFGIS LSDFQFKKKL QSGLFLSSLQ RFNPRTKNSE NYPTGHPDSN KNLSCLLTKG SSNPKLEKSD NAKKHQFLLF GQPILVEQQI SHSCSADAFP QVVNERNSSD SNREKNSDVL RSAPGKQISQ EKSCTTGFSW HQSLQNTSEN GMDTGHCKAF LESEDLGRTL DLSALHSYEE LRRKLAIMFG IERSDMLSHV LYRDVTGAVK QIGDEPFSVF MKTAKRLTIL MNRASGNSVG RRTWITGMRN AENGLEAPNK TGPLSIFA // ID B9N0A9_POPTR Unreviewed; 116 AA. AC B9N0A9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62804.1}; GN ORFNames=POPTR_0004s23010g {ECO:0000313|EMBL:ERP62804.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62804.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62804.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62804.1; -; Genomic_DNA. DR RefSeq; XP_006385007.1; XM_006384945.1. DR EnsemblPlants; POPTR_0004s23010.1; POPTR_0004s23010.1; POPTR_0004s23010. DR GeneID; 18098292; -. DR Gramene; POPTR_0004s23010.1; POPTR_0004s23010.1; POPTR_0004s23010. DR KEGG; pop:POPTR_0004s23010g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9N0A9; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 116 AA; 13661 MW; ACFB17CD8E28F890 CRC64; MEHLFTKQLS PTDTTHRLTI PAANLGDFEF PMGEHAIDIE ATDTIERQWI FRLSIRRENN PNPRPVFTGQ WTQFVNEKGL RVGDRIIFSR QQVEGNGVQY SIRAERRIFN YWVNVE // ID B9N0I3_POPTR Unreviewed; 662 AA. AC B9N0I3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 66. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0004s23770g {ECO:0000313|EMBL:ERP62884.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62884.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62884.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). RN [2] {ECO:0000313|EMBL:ERP62884.1} RP NUCLEOTIDE SEQUENCE. RG US DOE Joint Genome Institute (JGI-PGF); RA Shu S., Lucas S., Jenkins J., Grimwood J., Muchero w., Hayes R., RA Goodstein D., Rokhsar D., Schmutz J., Tuskan G.; RL Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62883.1; -; Genomic_DNA. DR EMBL; CM000340; ERP62884.1; -; Genomic_DNA. DR RefSeq; XP_006385086.1; XM_006385024.1. DR RefSeq; XP_006385087.1; XM_006385025.1. DR STRING; 3694.POPTR_0004s23770.1; -. DR GeneID; 18098365; -. DR KEGG; pop:POPTR_0004s23770g; -. DR HOGENOM; HOG000241141; -. DR KO; K14486; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 662 AA; 73786 MW; 13BA3BABAF9A13F4 CRC64; MAFAAMNHTS GGNPHAGGCN DALYKELWHA CAGPLVTLPR EGELVYYFPQ GHMEQLEASM HQGMEPQMPL FNLPSKILCK VVNVQRRAEP ETDEVYAQIT LLPEPDQSEV TSPDPPLPEP ERCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQTNMPSSV ISSQSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS LNKYLEVRNH KLSVGMRFKM RFEGEEVPER RFSGTIVGVG DNISSGWADS DWRSLKVQWD EPSSIMRPER VSHWELEPLV ATTPSNSQPV QRNKRARPYV IPSPTADLSA LGMWKSPVES SALSYGDSQR GRDLYSSPNF STTAKVNSLG FRGNSQVASV SHNSMHWPNR VESVTDSFAP VVNKDSGERR QGTGIGYKLF GIQLVENSNT EGTSPVVVSG TVVNDLPVLS LEAESDQHSE PEKSCLRSSQ ELQSRQIRSC TKVHMQGVAV GRAVDLTQFK RYEDLLRKLE EMFDIEGELS GSTKKWQVVY TDNEDDMMKV GDDPWNEFCG MVKKIFIYTS EEVKRLSPKI KLLAEEEVKG IGDNADAAVN TEDRSSTIGP GC // ID B9N0J6_POPTR Unreviewed; 558 AA. AC B9N0J6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62897.1}; GN ORFNames=POPTR_0004s23920g {ECO:0000313|EMBL:ERP62897.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62897.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62897.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62897.1; -; Genomic_DNA. DR RefSeq; XP_006385100.1; XM_006385038.1. DR EnsemblPlants; POPTR_0004s23920.1; POPTR_0004s23920.1; POPTR_0004s23920. DR GeneID; 18098379; -. DR Gramene; POPTR_0004s23920.1; POPTR_0004s23920.1; POPTR_0004s23920. DR KEGG; pop:POPTR_0004s23920g; -. DR eggNOG; ENOG410JDIP; Eukaryota. DR eggNOG; ENOG4111D0V; LUCA. DR InParanoid; B9N0J6; -. DR OMA; CDGKVWL; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 273 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 463 557 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 273 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 463 557 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 558 AA; 63455 MW; 96E99409C4FA359F CRC64; MGEGDGKPLM FVAKPPHFFK VILEDSLREG KLMLPQKFVT RYGMDLTNLA RLKVLGEAWE IELKRCDGKV WLQKGWKEFA EYYSVACGHF LVFEYERNCD FHVLIFDNSA TEIDYPLKNN RSEVPGRGLL KECTKDRGKE NNSVEILDHF SPSRRTRKKS PLPCPRPHKM VRTYSTYETG TCSKLSTSVE VPPTGTWSRG MKLESSKTKA KLRCSVRGLD EEDSIRGGRG MLMARGQRLS YAGALANMRS LTCYEKAKAL CRTSAFKSEN PFFKVAMSPS YVHTGYKLSV PSSFARKYFT KNKGNVTLCV TDGRTWPVKY CNRTKSGVIF CHGWKAFAKD NKLAVGDFCV FELINVTEMS LKVVFFRLKD VESLLSSEDM GGANQVEPNK SLVAKPQSDW NSRDGAGISN PDDEHKPGEF EHSESRFEVE PDKFGKPELK NSSSVLVTRG SKTESKFIST HPFFKVVLRS YYLNRCFVSV PMSFVERYFK HKSQIVMLQV ADRSWPVKLI IRWSQRQAIL SAGWARFARE NSLQVGHVCA FEIVKNGMLK VSISRSDR // ID B9N1E3_POPTR Unreviewed; 279 AA. AC B9N1E3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP66790.1}; GN ORFNames=POPTR_0001s40760g {ECO:0000313|EMBL:ERP66790.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP66790.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP66790.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000337; ERP66790.1; -; Genomic_DNA. DR RefSeq; XP_006370221.1; XM_006370159.1. DR EnsemblPlants; POPTR_0001s40760.1; POPTR_0001s40760.1; POPTR_0001s40760. DR GeneID; 18095551; -. DR Gramene; POPTR_0001s40760.1; POPTR_0001s40760.1; POPTR_0001s40760. DR KEGG; pop:POPTR_0001s40760g; -. DR eggNOG; ENOG410JFCN; Eukaryota. DR eggNOG; ENOG4111DJK; LUCA. DR InParanoid; B9N1E3; -. DR OMA; DVEYNIM; -. DR OrthoDB; EOG09360NZK; -. DR Proteomes; UP000006729; Linkage group LGI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 251 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 279 AA; 32023 MW; 37068D428DBCAA86 CRC64; MEKEDTKLMK LEKMDKDDYP EELREQGAAA LLLSCLLHTR LSCKTALALD KVKSNILGGG KRNQNSHSSR RRPRVSPTQN PGAAVRRNHF DDQQGEGNSN AAARNLPGEP PIRSLEVALR LIENYDPHEV PSIPGLNGII GRCSKPFEKQ LTESDLRDDQ SRLSINKADA QKYLYPLLNE DENLAEGINV TTYDPNGKEF EMVFKIWVSK IHVLIGGWKA FFHEHQLRKD QDFVTLWMFR RLDTEKLCFV INWRRLPGVT TPIKRKRVRM NKSMDQLTC // ID B9N4T3_POPTR Unreviewed; 407 AA. AC B9N4T3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62275.1}; GN ORFNames=POPTR_0004s15430g {ECO:0000313|EMBL:ERP62275.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62275.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62275.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62275.1; -; Genomic_DNA. DR RefSeq; XP_006384478.1; XM_006384416.1. DR EnsemblPlants; POPTR_0004s15430.1; POPTR_0004s15430.1; POPTR_0004s15430. DR GeneID; 18097852; -. DR Gramene; POPTR_0004s15430.1; POPTR_0004s15430.1; POPTR_0004s15430. DR KEGG; pop:POPTR_0004s15430g; -. DR HOGENOM; HOG000005864; -. DR InParanoid; B9N4T3; -. DR OMA; NREAING; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 304 400 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 304 400 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 407 AA; 46111 MW; 70026A4FC4BC123A CRC64; MAPRKEVRPT RSLQADQRPL WHFFKIITQS TLKDKKLRIP NKFARKFGEE LSDVAKVVLP NGHSWQIGLT KSNNSVSFDD GWLQFLEQHS VGYGHLLVFG YRGCSNFNAL IFDKTACEIP YHRCRGGTSG GKINYDEKCS PYDVDVMKDE GTIASIDSQY CCALESGVFD EDAGDSRQRH PSKPPPSENN AQERPCFECS GDKRGKIPVK KELIVMAELD DTDESKRRKL SKKCRLPRPH GSLIDETKVN KGKSKTKFAP SYADETDFSP RCGEDTDIIV CGFAKASEES KKAIHAARMF RPKNPSFMVL LRSYNKCFVA VPAEFSKRHL SGVSEHIKLQ VSDGRQWPLR LNKTQRARMI ISRGWNEFKR ENNLKEGDVC VFELIKNKKF SLQVSMFRAV DGSGPSN // ID B9N4X4_POPTR Unreviewed; 476 AA. AC B9N4X4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62216.1}; GN ORFNames=POPTR_0004s14900g {ECO:0000313|EMBL:ERP62216.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62216.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62216.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62216.1; -; Genomic_DNA. DR RefSeq; XP_006384419.1; XM_006384357.1. DR EnsemblPlants; POPTR_0004s14900.1; POPTR_0004s14900.1; POPTR_0004s14900. DR GeneID; 18097795; -. DR Gramene; POPTR_0004s14900.1; POPTR_0004s14900.1; POPTR_0004s14900. DR KEGG; pop:POPTR_0004s14900g; -. DR HOGENOM; HOG000082939; -. DR InParanoid; B9N4X4; -. DR OMA; LPMPFCK; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 426 474 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 476 AA; 54100 MW; 9955C53E17B69029 CRC64; MDAKEDQNTS PKPRLPISDP VPLNTYPRIR RRKPNMSKLK LTQIHEKSPE PEYKTGHELV LYDKSEESRE PRSRKRKKDA FSVFYDSTET KSPAMELAEE IRANLEAAYP SFAKTLVRSN VTVGFWMHLP MRFCKMHLPK NDTTVFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH EGDVLVFHLL KPSRFKVYIV KGNGSSQADG EFGIPSSDAY GKEIISKPDE KDVQGGKKAK HLELLPAGHL EENNQENGLI VVDNNKGYAA SQSENESEDR ASETLGVIKL SGSTVDFDNF EGIENFSVLL NGFAIDSELS EHHRIKYYEL CRSQNSFLHS NLLNSINHKL AAEIIIGTVD ISEEIRSSRL SSSHADYGVW DKTLKGFEMF GMNVGFLRER LSRLMSLALE SEEAMESECR EVKLEQARID SEMKSLELRL LKLKETRERL DDEIEALKEN AEKHELMFQE AVSAPW // ID B9N847_POPTR Unreviewed; 1113 AA. AC B9N847; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 64. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0018s14300g {ECO:0000313|EMBL:ERP50002.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP50002.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP50002.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000354; ERP50002.1; -; Genomic_DNA. DR RefSeq; XP_006372205.1; XM_006372143.1. DR STRING; 3694.POPTR_0018s14300.1; -. DR EnsemblPlants; POPTR_0018s14300.1; POPTR_0018s14300.1; POPTR_0018s14300. DR GeneID; 18107849; -. DR Gramene; POPTR_0018s14300.1; POPTR_0018s14300.1; POPTR_0018s14300. DR KEGG; pop:POPTR_0018s14300g; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; B9N847; -. DR OMA; LLTKGMM; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000006729; Linkage group LGXVIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1001 1085 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1113 AA; 123238 MW; 9215A68D4F8B3DED CRC64; MKSPANGAAA AVTNGEGVEK KSINPELWQA CAGPLVNLPA AGTHVVYFPQ GHSEQVAASL KKDVNAQIPN YPNLPSKLLC LLHNVTLHAD PETDEVYVQM TLQPVSSFDK DALLRSDLAL KSNKPQTEFF CKTLTASDTS THGGFSVPRR AAEKTFPPLD FSMQPPAQEL VARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVLFMRDE KQQLLLGIRR ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVYY NPRASPSEFV IPLAKYYKAV YSNQISLGMR FRMMFETEES GTRRHMGTIT GISDLDAVRW KNSQWRNLQV GWDESTAGER RNRVSIWEIE PVTAPFFICP PPFFRSKHPR QPGMPDDDST DFDSLFKRTM PWLGDDIYMK DPQVLPGLSL AQRMNMQQNP SLANSMQPNY MQSLSGSVLQ NLPGGDLSRQ LGLSSPQMPQ PNNLQFNAQR LPQQAQQLDQ LPKLQSLLNP LGSIIQSQQQ MGDITQQSRQ NMMAQTLPSS QVQAQLLQPQ TLAQTNNILQ QQPSIQSHQL LRNLPQTLHQ QQQNQQQHIM GQNQQQSLMQ SQLSDQVNQH MQMSDNQIQS QLMQKLQQQQ QSVSAQQSAM HQAGQLGQLQ DSQRQLLDAS QSFSRSMTPS QMLEIPQTTP TSLPQPNTIP QQMTKNNNQT NTRFSHLPQQ LKPQQQHSGI MLLSEMAGHM GLPPSSMANQ LSTAGSSILT AAAGPGQSGI TDDVPSCSTS PSTNNCPNIV QPMINGWAHR STAMGEDMAQ SAVTLFSPSA LETVSSNGNL VKDLLQKSEV KPSLNISKNQ NPGLFSSQTY LNGVAAQIDY LDTSSSTTSV CLSQNDVHLQ QNNNSLSYNP QSVLLRDASH DGELQGDPRN NILYGTNIDS QLVMPINSDH LLTKGMMGLG KDFSNNFSSG GMLTNCENSK DPQQELSSAI VSKSFGVPDM PFNSIDSTIN DSSLLNRGSW APPQQQFQRM RTYTKVYKRG AVGRSIDITR YSGYDELKQD LARRFGIEGQ LEDQQRIGWK LVYTDHENDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQMS LDGDFGNSVL PNQAGSSSDN VNA // ID B9N8A3_POPTR Unreviewed; 124 AA. AC B9N8A3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62798.1}; GN ORFNames=POPTR_0004s22950g {ECO:0000313|EMBL:ERP62798.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62798.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62798.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62798.1; -; Genomic_DNA. DR RefSeq; XP_006385001.1; XM_006384939.1. DR EnsemblPlants; POPTR_0004s22950.1; POPTR_0004s22950.1; POPTR_0004s22950. DR GeneID; 18098286; -. DR Gramene; POPTR_0004s22950.1; POPTR_0004s22950.1; POPTR_0004s22950. DR KEGG; pop:POPTR_0004s22950g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9N8A3; -. DR OMA; GILIWIW; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 124 AA; 14845 MW; D935EA9119806E9F CRC64; MYRRPIFTKI LSRTDVKHRM TIPMESFNVF QIPQGKHSKR FVFIDMIDTG RPWSFRCSTR KKDVYPKPVF SSGWIKYVRR KGLREGDQVS FFFVEKDGEE GLRFGVQAQK KLRLWGKDCW TTPF // ID B9N8A6_POPTR Unreviewed; 110 AA. AC B9N8A6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62801.1}; GN ORFNames=POPTR_0004s22980g {ECO:0000313|EMBL:ERP62801.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62801.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62801.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62801.1; -; Genomic_DNA. DR RefSeq; XP_006385004.1; XM_006384942.1. DR EnsemblPlants; POPTR_0004s22980.1; POPTR_0004s22980.1; POPTR_0004s22980. DR GeneID; 18098289; -. DR Gramene; POPTR_0004s22980.1; POPTR_0004s22980.1; POPTR_0004s22980. DR KEGG; pop:POPTR_0004s22980g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9N8A6; -. DR OMA; YSSSAQM; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12577 MW; D10EB180BDFF9B09 CRC64; MENFTKKLDS TDVQRRLTLP ENCLKDFQGD HEANLKFKDE EGQVWTFRCR VSPRGSSKPA LSGDWFSFVR KKGLRTGDVI VIISDNEKDV AAGEHFKIKI KKSASTHHQN // ID B9N8A7_POPTR Unreviewed; 118 AA. AC B9N8A7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62802.1}; GN ORFNames=POPTR_0004s22990g {ECO:0000313|EMBL:ERP62802.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62802.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62802.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62802.1; -; Genomic_DNA. DR RefSeq; XP_006385005.1; XM_006384943.1. DR STRING; 3694.POPTR_0004s22990.1; -. DR EnsemblPlants; POPTR_0004s22990.1; POPTR_0004s22990.1; POPTR_0004s22990. DR GeneID; 18098290; -. DR Gramene; POPTR_0004s22990.1; POPTR_0004s22990.1; POPTR_0004s22990. DR KEGG; pop:POPTR_0004s22990g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9N8A7; -. DR OMA; QFRIEVK; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 86 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 118 AA; 13476 MW; CD50242B09C7CB59 CRC64; MALVFSKFLT ADDIENGLSI PGCSLGPLPF QEGQSMNMHV HDGNGHEWIF SCTIKRNEST GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KNQAMGTWIK VEVKRKIRLF GEDVWADV // ID B9NBH4_POPTR Unreviewed; 117 AA. AC B9NBH4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP61706.1}; GN ORFNames=POPTR_0004s01140g {ECO:0000313|EMBL:ERP61706.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP61706.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP61706.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP61706.1; -; Genomic_DNA. DR RefSeq; XP_006383909.1; XM_006383847.1. DR STRING; 3694.POPTR_0004s01140.1; -. DR EnsemblPlants; POPTR_0004s01140.1; POPTR_0004s01140.1; POPTR_0004s01140. DR GeneID; 18097374; -. DR Gramene; POPTR_0004s01140.1; POPTR_0004s01140.1; POPTR_0004s01140. DR KEGG; pop:POPTR_0004s01140g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9NBH4; -. DR OMA; AMEFEAT; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13943 MW; F0F223972691CDD6 CRC64; MEAMNKVLSN SDTANKRLEF PVRSLPAFPM PDGQNSMEFV AFDRLQKPWK FKVSIRNEGR YPKPWLNGEW DDYVHQKGLK KGDKVIFTMD DQENGDRIYY IRAERKLFGF WYSIDQQ // ID B9PC87_POPTR Unreviewed; 125 AA. AC B9PC87; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62797.1}; GN ORFNames=POPTR_0004s22940g {ECO:0000313|EMBL:ERP62797.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62797.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62797.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62797.1; -; Genomic_DNA. DR RefSeq; XP_006385000.1; XM_006384938.1. DR EnsemblPlants; POPTR_0004s22940.1; POPTR_0004s22940.1; POPTR_0004s22940. DR GeneID; 18098285; -. DR Gramene; POPTR_0004s22940.1; POPTR_0004s22940.1; POPTR_0004s22940. DR KEGG; pop:POPTR_0004s22940g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9PC87; -. DR OMA; WIEYIRE; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 125 AA; 14732 MW; E746B50B8B1B0158 CRC64; MYQRLIFTKI LSRTDVEHRM AIPMGSFDVF QIPQGEHSKQ FDVIDMIKTG HSWSFRCSTR KKDFYPKPVL SSGWIEYIRE KDLREGDQVS FFLVQKDGEE GLRLGVQAQK KLIRLWGKDC WTAPF // ID B9PDD8_POPTR Unreviewed; 160 AA. AC B9PDD8; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 56. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP54447.1}; GN ORFNames=POPTR_0012s02060g {ECO:0000313|EMBL:ERP54447.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP54447.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP54447.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; ERP54447.1; -; Genomic_DNA. DR RefSeq; XP_006376650.1; XM_006376588.1. DR EnsemblPlants; POPTR_0012s02060.1; POPTR_0012s02060.1; POPTR_0012s02060. DR GeneID; 18103645; -. DR Gramene; POPTR_0012s02060.1; POPTR_0012s02060.1; POPTR_0012s02060. DR KEGG; pop:POPTR_0012s02060g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9PDD8; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 124 152 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 91 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 91 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 160 AA; 18659 MW; 44D73536CDCDDEB3 CRC64; MAKFSKLVTK TDIHKRLSMR SSHVRDFPEI DESGFVWTFQ CSTRKKGNPK PVLAKGWLAF VRHKELKAGD RVKFFKVKDQ SDTVTPFYRV EAEKKIKIFG IIFGYNNYGS KCRHNFEASR NFNLVSLFTF IQVCHLNFVV ILTNSIVFLQ FVKCFDGNFN // ID B9PEP3_POPTR Unreviewed; 112 AA. AC B9PEP3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP58120.1}; GN ORFNames=POPTR_0007s02830g {ECO:0000313|EMBL:ERP58120.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP58120.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP58120.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000343; ERP58120.1; -; Genomic_DNA. DR RefSeq; XP_006380323.1; XM_006380261.1. DR EnsemblPlants; POPTR_0007s02830.1; POPTR_0007s02830.1; POPTR_0007s02830. DR GeneID; 18100871; -. DR Gramene; POPTR_0007s02830.1; POPTR_0007s02830.1; POPTR_0007s02830. DR KEGG; pop:POPTR_0007s02830g; -. DR HOGENOM; HOG000090526; -. DR InParanoid; B9PEP3; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 112 AA; 12706 MW; 240C7EF7896D405B CRC64; MEIELVNKKL TTTDIESRLS YPTGNLWPFQ MVQGENAISL AARDPTGRVW EFKLYTRTHG RYNKPVFGGG WLKYVREKGL TVNDSIILTM VADAENGVSY NIRVEPNTEL AI // ID B9R7J7_RICCO Unreviewed; 285 AA. AC B9R7J7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF52477.1}; GN ORFNames=RCOM_1592580 {ECO:0000313|EMBL:EEF52477.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973772; EEF52477.1; -; Genomic_DNA. DR InParanoid; B9R7J7; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32650 MW; 4495843EB3D0B6D5 CRC64; MAESRRFFRV MMPGFRSKLV RGQYVSCKQP LPVAFCRQIK GEGSDRAVVK SSDREWHIKV GKCCDGSLYF EEGWEDFVKH HGLNLGDFVV FEYNGDLVFD AIVFDSSACE KEIPVSINLF SEKMKNKNKN KNKKKKKKKK ILSDEGKSPL EDAKSYPTNG PHFITTINAS NGPDGISYLP DRKEFSCACK LQHIPVEFAK SQKLDRASIV ILRDSSGKLW PVKLCTSDFK FRGKMLKRTA MRKGWLHFYV ANKLKKGDVC LFELDLTRKK SYTLVMDVHI FPLVL // ID B9R7J8_RICCO Unreviewed; 567 AA. AC B9R7J8; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF52478.1}; GN ORFNames=RCOM_1592590 {ECO:0000313|EMBL:EEF52478.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973772; EEF52478.1; -; Genomic_DNA. DR InParanoid; B9R7J8; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 243 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 463 559 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 243 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 463 559 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 567 AA; 63822 MW; 0B5352EC7595704E CRC64; MAKEENEEEL INARRPCFFE IFSSNLSSDR LRIPARFTRH LEGRTSGSVS LTGPSGNIWT VNLIQQSEDI FFDHGWPVFV KDHFIACGDL LLFRFDGELC FTVQVFDQSK CEKEAAFHSK CTQNPIQFYI SIGQKRERDD GDDDGNKDSF LVRSCESMPK KVKRGQEESS LHETKQCWSP CQNTAASSRL NICHEILDPK AEVAIQKRTG KEDRNLADRG YGSIFLEREK RVAQSFISCF PYFVRIMKRF NISGSYTLNI PYQFSTAHLP SSKTEIVLRT IKGACWTVNS VPTTRVHTSH TFCGGWMAFV RSNDIKIGDV CIFELVRKYE LRVFILRVGK EVVEDQSGNV APDGGSIDSM STSHKIENFP KQSRKSGLKV HSRLITKVEV CDRKKSNKSQ AAAFCNRITK HGDAAKGSGT EKQAEAIACS RKNLDVELSP HAAAGLRMMA EAAKSFTSGF PNFVRIMRKF NISGSYTLKI PHQFSAAHLP NYKTEIILRN SHGERWTVNS VPDSKGRTVH TFCGGWMAFV RDNDVKEGDI CMFELVTECE MLVHISGVGG KMLHSPS // ID B9R7J9_RICCO Unreviewed; 360 AA. AC B9R7J9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 44. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF52479.1}; GN ORFNames=RCOM_1592600 {ECO:0000313|EMBL:EEF52479.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973772; EEF52479.1; -; Genomic_DNA. DR RefSeq; XP_002510292.1; XM_002510246.2. DR RefSeq; XP_015574771.1; XM_015719285.1. DR GeneID; 8260891; -. DR KEGG; rcu:8260891; -. DR InParanoid; B9R7J9; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 347 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 347 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 41403 MW; C133F485B54C9CC5 CRC64; MKEGACADCR SWEEKLYWMH FQYIYFCQFL LAGFNQRLAI PEKFTRNLRR KLRDTVTLKS PCGTAWEVCL TAHENTLFFD HGWREFVEYH SLEENDILVF KYNGESSFDV LMFDGQSMCE KAGSYFLAKR THKGYNSTGY QSKRKTGESS AEVLSALPVD GNGGSPLKKP RHHNFHTTLG RPLISRAVNN KARREIKFKT PIDAPKTARK KEPYTWAEDA EAKADTAHDK AKLKVCQSAQ AAVTSEGFIA VMKPTHVSKK FFMSIPSSWV SEHITCQENQ YVILRIKEKT WQVRLYYRKR PNRGGLACGW KSFVLDNNIQ EFDVCVFEPG NPLDNTMVLD VNIFRVVQDM NPHTPASLTR // ID B9R7K0_RICCO Unreviewed; 337 AA. AC B9R7K0; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF52480.1}; GN ORFNames=RCOM_1592610 {ECO:0000313|EMBL:EEF52480.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973772; EEF52480.1; -; Genomic_DNA. DR InParanoid; B9R7K0; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38658 MW; 6028949DF551DF42 CRC64; MGEESCRDCR SWEEEIYWTH FQCLHFSQIL HPGFDRRLAI PEQFTKNLRR KLPKIITLRG PSGRTWEVGL AANDDTVFFN HGWEAFVIDH SLQEKDLLIF KYNGDSCFDV LIFDGQSLCE KAASYFVRKC GHREQESGCQ TKRRIGEISV EATLPSPENP VEGPTPEKSA NTDIYTTPLR QPITSRAYTK KTRREVDPDV IHNVPYLSSR RLITEEEKQN ALQLAQAALT SEGFMVVMKP THVNRRFYMS IPSGWMVKHL SSLEKQDVIL CVKEKQWVTK FCYQKSKHSG GLSGGWKSFA LANDLQEFDV CVFEPSGLQN NAVVLNVNIF PVYQEDL // ID B9R865_RICCO Unreviewed; 950 AA. AC B9R865; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 58. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1597120 {ECO:0000313|EMBL:EEF52695.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973772; EEF52695.1; -; Genomic_DNA. DR RefSeq; XP_002510508.1; XM_002510462.2. DR GeneID; 8274635; -. DR KEGG; rcu:8274635; -. DR InParanoid; B9R865; -. DR KO; K14486; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 836 920 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 950 AA; 104628 MW; 6E4F80EE30D789E0 CRC64; MASVEEKIKA GSFVSSGAQT NLLEEMKLLK EIQDHSGTRK TINSELWYAC AGPLVSLPQV GSLVYYFPQG HSEQVAVSTK RTATSQIPNY PNLASQLLCQ VHNVTLHADR DTDEIYAQMS LQPVNSEKDV FPIPDFGLKP SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYT MQPPTQELVV RDLHDNTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLKAGD SVLFIRDEKS QLLVGVRRAN RQQTTLPSLV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RACPSEFVIP LAKYRKAVFG TQVSVGMRFG MMFETEESGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCSDKQN RVSSWEIETP ENLFIFPSLT SGLKRPLHSG YLGGETEWGN LIKRPLIWLP ETANGNFAYP SIPNLCSDRL FKMLMKPQGV NYPGICESSL QEVSAAKGAS LDDIKAMQGT MKHMPQLNQS VVTSVENQNQ SQFCPNQSDT VNSPSSKINA TGNIYPPSNI ENQIPAGNII EKLKSEPELS TDQLSQVTSI VECNEEKPSS SFTNPQNSGN QLEFQNQNQS HLHAQTNLWL VQSSLEPSIL HPQQIHVPQA DANTFNCSLP FLDSDEWMSN PSCLSFPGMY GSSGPVSMFG FQEPSAILPE AGNPSVPLMN QDLWDQQLNN LRFLSPASQN PLAQQDPCSL NSTVAKALSD ESNDQSGIYG SLNIDVGNGG SAVIDPSVSN AILDEFCTAK DADFQNPSDC LVGKEVFSTS QDVQSQITSV SLADSQAFSQ QDFPDSSGGT SSSNVDFDKG NYMQNNSWQQ VAPRVRTYTK VQKAGSVGRS IDVSGFKNYE ELCSAIECMF GLEGLLNNPR ESGWKLVYVD YENDVLLIGD DPWEEFVGCV RCIRILSPSE VQQMSEEGMK LLNNVNMQGL AASIADGSHA // ID B9RA75_RICCO Unreviewed; 844 AA. AC B9RA75; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1503930 {ECO:0000313|EMBL:EEF51702.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973773; EEF51702.1; -; Genomic_DNA. DR InParanoid; B9RA75; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 212 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 718 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 212 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 844 AA; 93835 MW; 8D31F3C6AA7538E5 CRC64; MDSSEISIKG NSSVRGGEES FSSSYSEPNV AMEGQKGHST RPVSAKDAEK ALYTELWNAC AGPLVTVPRE NELVYYFPQG HIEQVEASTN QLADQQMPVY NLPSKILCRV INVQLKAEPD TDEVFAQVTL LPEPIQDENA VKKDPPQPPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLVSI NSTEFVRCLI DIIMLIPGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI STGTLFTVYY KPRTSPAEFI VPFDRYMESV KNNYCIGMRF KMRFEGEEAP EQRFTGTIVG IEDADSKRWR ESKWRSLKVR WDETSTIPRP DRVSPWSVEP ALAPPALNPL PVPRPKRPRS NMVPSSPDSS VLTRDGSSKV TIDPPPPSGY SRVLQGQEFS TLRGNFAESN ESETAEKSVM WPPSVDDEKI DVSASRRHGS ESWNLSGRPE PTYTDLLSGF GSNADSSHGF TSSFVDQAAT AASRKLVLDQ EGKFNLLANP WSLMSSGLSL KLSESNTKVS VQGRDIPYQA RGNIRCSAFS EYPILHGHRV DQSHGNWLMP PPPPSHFDNL AHAREPVSKP LQEHDIGKST DGNCKLFGIP LFSNPVAPEP ATSHRNMVNE PTTAHPQSHQ PRALESDQRS EQPRVSKMAD DNEHEKQFQS GHLHTRDIQG KTQTGSTRSC TKVHKQGIAL GRSVDLAKFN NYDELIAELD RLFEFGGELI SPKKNWLIVY TDDEGDMMLV GDDPWQEFVG MVRKIFIYTR EEVQKMNPGT LNSKGDEHLL DVDGVDAKEV KCVPLPPAQS TENC // ID B9RBC5_RICCO Unreviewed; 418 AA. AC B9RBC5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF50846.1}; GN ORFNames=RCOM_1674130 {ECO:0000313|EMBL:EEF50846.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973774; EEF50846.1; -; Genomic_DNA. DR InParanoid; B9RBC5; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 166 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 418 AA; 47941 MW; E482440B1E5FC2D5 CRC64; MDSFQNSQFS SIRRPLCYSS TSSNSSTQTY HCPAEDNMPT TPFQSPHFQQ EYRPEQAGQN STSAFSMCPY WLSQNGTEIQ TWLLQQNGLS IDQGKKVLDA YKTKIARNKR KLARQRSLSR NSSSSANSIQ VDTRRLAFNM QDSQSTSKRD LYKFCTPDNK KLRVLLRKDL KTSDVGSLGR IVLPKREAEE NLPILSDKEG ILVAIRDVCS TKEWSLKYKY WSNNKSRMYV LENTGDFVKQ NGMRIGDSLT LYEDESKKLL CTHSTEETGE VFPHARRQYF SVKKVEALEA EPSCKQHATN QNYIYIPHTY QARDEEEASL ALLIEQLKHK EQQEEVNSLV TLSMDIAPYR HKEEEKNYGP FNNLTSISIY PQSTAAAMAI QPSSSAHSTM RVVDDHYIDD FYTALDVLPD VNRYNFSL // ID B9RFY9_RICCO Unreviewed; 787 AA. AC B9RFY9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1438160 {ECO:0000313|EMBL:EEF50110.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973777; EEF50110.1; -; Genomic_DNA. DR InParanoid; B9RFY9; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 674 767 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 787 AA; 89008 MW; 40F4B9B5CC9C8061 CRC64; MDDNGNGIAV SGKDSGDALY KELWHACAGP LVTVPRQGEL VFYFPQGHIE QVEASTNQAA DEQMPAYDLP GKILCRVVNV QLKAEPDTDE VFAQITLLPQ SEQDENLVEK KALPAPTRPR VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSLQPP AQELVAKDLL GNEWRFRHIF RGQPRRHLLQ SGWSLFVSAK KLVAGDAFIF LRGETGELRV GVRRAMRQSC NVPSSFMSSH SMHIGILATA WHAVSTGTMF TVYYKPRTSP AEFIIPMDKY MESVKNNFTI GMRFKMRFEA EEAPEQRFLG TVIGVEHADP KRWPTSRWRC LKVRWDETSS LHRPDRVSPW EVEPALAPLD PLPTCRLKRS RSNMPMPSAD SSAVMKKDNW LSRDPQNQDI PTMRSKLAVN NYLDTAQNPN GWTLFQGKDQ NGTDFDKRRS GPDNGMPQMM PGVEYKNSTT GPDTIHETYD FSRPLVEFHP ANVDQLKTHA FGQESKFNRC PPCKMHSSSP HNTPESKLEL CASKNKYHSL NIKSDTLRQN DTVHGLEVDY QPGSWISPLT NADNSPYLAS EKLYPVALQQ HEVKSKEDGN CKLFGISLIS SPVPMENATV DNNFMHRPQG LFNLASDKLQ DFGSDLSLQQ LKKPKFFDST IRCEEEKLFM ASHFIEGKLQ NGSTRCVKVH KQGIAVGRYV DLTKFNGYNE LIAELDRIFE FSGELITSNK NWLIAFTDDE GDMMLVGDDP WEEFCSMVRR IFVYTREEIN RMNQRSLNPE LVENSVIADQ LAGPEEK // ID B9RH04_RICCO Unreviewed; 321 AA. AC B9RH04; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF49366.1}; GN ORFNames=RCOM_1445690 {ECO:0000313|EMBL:EEF49366.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973778; EEF49366.1; -; Genomic_DNA. DR RefSeq; XP_002512863.1; XM_002512817.2. DR GeneID; 8285273; -. DR KEGG; rcu:8285273; -. DR InParanoid; B9RH04; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 35971 MW; 075A305FAC378988 CRC64; MKTERGAVHE KPEACTWITS GDSVTEEGDN KANNTFEEAS SDQGSGRTVM MTRSSGDDDN VVAVLGFSVI RKKRMPRQRR PSSSINNLFS FPIATNASSS SSSTTTTTTS HVPDLPSFPA RVIDQRRLSF LFQKELKNSD VSSLKRMVLP KKAAEAHLPV LESKEGIFIS MDDLDGLHVW SFKYRYWPNN NSRMYVLENT GDFVNTHGLQ LGDFIMVYKD DQNQNYVIQA KKASDEDVYA NIARTAVNDI VLYDCEINKS SSFYMNYPIV DNTGLSFIYD TTTFSDDSPL DFLGGSLTNY SRIGHRETFG PVESLSLDEF N // ID B9RJC5_RICCO Unreviewed; 603 AA. AC B9RJC5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 51. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1033160 {ECO:0000313|EMBL:EEF48427.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973783; EEF48427.1; -; Genomic_DNA. DR RefSeq; XP_002513844.1; XM_002513798.2. DR RefSeq; XP_015571564.1; XM_015716078.1. DR GeneID; 8262995; -. DR KEGG; rcu:8262995; -. DR InParanoid; B9RJC5; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 603 AA; 66512 MW; DC83B1BE36BC6EFA CRC64; MPPSLHPSAD LRRVDRRIWR ACAGSSVQIP TINSRVYYFP QGHLEQSSNS SSIVSSCILS SIALSKPVIP CQISAVQFLA DPVTDEVYTK LLLFPIDSFN PSVPVLEHSG NLEQHHGYDY DDDEDKIVAF AKILTPSDAN NGGGFSVPRF CADSIFPPLN YHAEPPVQTL TVTDIHGITW DFRHIYRGTP RRHLLTTGWS KFVNHKKLIA GDSVVFMRNM TGKMFIGVRR AVRPNNGGSD CARWREQIAC FGGGGGDVKM KVKEEGYSRN GRGKVSPEAV MEAVERAAQG FSFEVVYYPR AGWYSDFVVR TDVVDGALAV CWSAGMRVKM AMETEDSSRM TWFQGTIASA SLPDCGLWRG SPWRMLQVAW DEPEVLQNAK RVSPWQVEYV SPSPPLHGAF PPAKKFRFPE NSGFLTDGEG ELFFPMSGLT NSTMGNINQS LNYHSFPAGM QGARQNPFSV YGLSNFFSED TSHLCSDNVF GNKMVPKLKT VSTELNIGSS PSENLSPDSQ SSIHSCDTEL VGNPGCNSTK AGISSFQLFG KIIHMSQPVE SGFEDAGYVE DYVSKRYNED NPLDLALTSS YTELLSRIDV QCQRASAVEA CSL // ID B9RMW1_RICCO Unreviewed; 450 AA. AC B9RMW1; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF47084.1}; GN ORFNames=RCOM_1340820 {ECO:0000313|EMBL:EEF47084.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973790; EEF47084.1; -; Genomic_DNA. DR RefSeq; XP_002515100.1; XM_002515054.2. DR GeneID; 8270772; -. DR KEGG; rcu:8270772; -. DR InParanoid; B9RMW1; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 31 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 450 AA; 51277 MW; 3F7040482C82C660 CRC64; MNFVEQEREY CDKGEEQEEE EEEEEEEEEE TIMTTTSMLP FPSPSSPSSS ATAKYRNFLP QHHNSLWLAS SDHSQQDNKT QESSLNFDKK LDLMDLSLGN DNRTLNTSTS TAGASSGSIE REHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSSNEK GLLLNFEDRN GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGESGKH RLYIDWRRRP NAPDPTSFTH LELQNQLHFP QSVRWGRLYS LPQPLSVPRV PFEQSQFHHL NYTIQPYIHN HHDHHYHHHQ QQQQVTSYGN AAAPQYYLRP SPPPPLPSPG TVRIGAVHHH HHPQQQQEEG GDKGSMVIDS IPIVNGRSAG KRLRLFGVNM ECPTQDDQYS SSSDNLPHGS TVLSSFFPHL ASHSRPPSSS GASMPTSRQA DAHHEFPKKG KTSLSFDLDI // ID B9RNP9_RICCO Unreviewed; 559 AA. AC B9RNP9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF46817.1}; GN ORFNames=RCOM_0919620 {ECO:0000313|EMBL:EEF46817.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973791; EEF46817.1; -; Genomic_DNA. DR InParanoid; B9RNP9; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 174 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 338 419 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 445 540 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 174 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 338 419 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 445 540 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 559 AA; 64386 MW; DCA8EE14C71CF505 CRC64; MLLPSKPHFF KPLLPGFEHE FLIPVSFFKY LKGQECKNAV LSSCPGKLWP IKINGRRFED GWKEFTRHHD LHVGDFLVFR HEGDMLFHVK VFDSSTCARD YPFFSIKEEK IEIHEEEPAQ KSSPNWSVIS TYALNMYGFI FICTHWLDSL ICIFKQHMST DFARLHGLIN RRCKMIVMDE EGRSWPTMLW YKKSDGQVFI GCGWTSCRIV NDLKQGDRLR FELIKNGKRP LLKMNKNLSF FDQSCCEGLQ ANTEAKRDRN YDGEQAGSSS TRRHSVNATS KASYSRDSQL ANQVQLQKIP KNEVATESGS SKPQKKKRPT TSSKAKACPS GLQHPFFLYI PMKFARLHCL DNRCCKMILI DQEGRSWPAK LWCRKTDGQA YISYGWRAFS VANDLKQGDS FIFELIGNGK RPVLKIHRLE TNPKTEEEQT YNVAQAGSSS TRLPQVAITV RASYIKFSQL RIPINFARRH NLARECSNAT LMDERGRSWL VSLKVKYKDI YIGYKWSAFA AENCVREGDV YMLELIKGGE KPVLRIYANA ASAFRSFFPL VHGTTYKID // ID B9RNQ0_RICCO Unreviewed; 368 AA. AC B9RNQ0; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF46818.1}; GN ORFNames=RCOM_0919630 {ECO:0000313|EMBL:EEF46818.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973791; EEF46818.1; -; Genomic_DNA. DR InParanoid; B9RNQ0; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 177 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 273 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 177 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 273 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 42279 MW; 8BC1F25457152C12 CRC64; MSSSKPHFFQ PVLPGFEDEP SIPVSFFKHL KGNRREIAVL RSTAGKLWHV KINGRRFEDG WKDFAKYHDL HIGDFLVFRH EGDMVFYVMV FDPSACEREY TSFNVKEEME TSEEEKEPAK TSDLRKFTKN KQIMISVEGK GNPPVFENPH FAVNMTSYTA SHPRKPLKFI YLFKQNIPKK FAEANGLYNR YCKIVLVDQE SRSWLADLGY KKADGTVYVK DGWSTFCIAN DLKKGDSFIF ELIKEKKPTL RMSRLKRSLK TRKVGSSLTK DAQFSVTVKA PYTKNSQLKI PRDFARRNNL NREYAKMILT NEKGSSWTVS LEKNSSSNDI YIGRGWSAFA AANGIREGDE LMLKVIKGGE KPVMRICG // ID B9RR61_RICCO Unreviewed; 1119 AA. AC B9RR61; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0710450 {ECO:0000313|EMBL:EEF46232.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973802; EEF46232.1; -; Genomic_DNA. DR RefSeq; XP_002516230.1; XM_002516184.2. DR GeneID; 8259066; -. DR KEGG; rcu:8259066; -. DR InParanoid; B9RR61; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 992 1085 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1119 AA; 125134 MW; 450CC4E2A66FF8E0 CRC64; MKVPPNGFMA NSAEGERKSI NSELWHACAG PLVALPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPFS KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPVRWKTSQW RNLQVGWDES TAGERPSRVS IWEVEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGLKDTQSSI FPGLSLVQWM SMQQNNQFPG AQAGFFPSML PSNTLHNNLT TDDPSKLLNF QAPGLSVPSL QFNKANPQNQ VSQLAQPSMA WTQQQQLQQL LQTNINQQQS PVPQQQQQPH PQQQQQRQHP QPQQPSQQQQ PQQQPQQIRQ PPPQVQLQQQ QQQQQQIFQP PVNNGVIAPN QIPNQSMQQP IVYSQLQQQQ QQQLLTSNTQ SQNIPAATKG SYQLTSLPQE TQFQQQMEQQ SNLTQRHQQQ TQLQQSPLQL LQQNLSHRAQ PQTQPQHQVP QLPQPGLSEQ QLHLQLLQKL QQQQQHQLLS PTSSPLQPQM IQQQQMHQQN QQFHQSPLSQ SQQQPISSNS FSTAALMQSQ SFPVSQPQGL QKSPTIIRPH STLTDGDAPS CSTSPSTNNC QISPSNFLNR NQQAPALMMS DSVVEPATNL VQELNGKSDI RVKHEFPGSK GADQLKYKGT MTDQLEASSS GTSYCLDAGN IQQNFSIPTF GLDDVQSHPR NSLPFANNID SLAPDTLLSR GYDSQKDLQN LLSNYGGTPR DIETELSTAA ISSQSFGVPN IPFKPGCSND VAINDSGVLN GGLWANQTQR MRTYTKVQKR GSVGRSIDVT RYKGYDELRH DLARMFGIEG QLEDPQSSDW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQQM SLDGDLGSVP VPNQACSGTD SGNAWRGHYD DNSAASFNR // ID B9RTD3_RICCO Unreviewed; 177 AA. AC B9RTD3; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 12-APR-2017, entry version 32. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF45381.1}; GN ORFNames=RCOM_1284760 {ECO:0000313|EMBL:EEF45381.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973813; EEF45381.1; -; Genomic_DNA. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 167 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 177 AA; 19607 MW; FB54EFD23ED2CF94 CRC64; MMLFVTRSLK EKSPVSSGQP LKKKKLENPT RQYKGTANTR VIIYSSGISI GNSEELNHEK QNATGKKIIK GTYDEAANKL TENILQSGHQ VRLSEAFPSG KIHVPLNFMA KCSNQSTTNV TLQVKNRQWN VKLISYASRG ILSAGRPAFA HNNVQAGDVC IFELINAAKG LDFEETW // ID B9RYJ7_RICCO Unreviewed; 277 AA. AC B9RYJ7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 45. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF43706.1}; GN ORFNames=RCOM_0813720 {ECO:0000313|EMBL:EEF43706.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973830; EEF43706.1; -; Genomic_DNA. DR InParanoid; B9RYJ7; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 227 263 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 277 AA; 32165 MW; 0BDF4045906AE823 CRC64; MVISKSKYEE IRQQRLAENK KRMEELNLKK LSDGLRTPSP RKSPMKHAKP RVPRLPAELV TVRRSSRFSD KPPMALESME RPRRRVVYLI HPALRFTCRS YSYQRRDLLN RIYASDEVRA YAIDRAEKLQ SDLESDFPSF VKPMLQSHVT GGFWLGLPVQ FCKDHLPSRD EYITLVDENG DASETKYLVQ KNGLSGGWRG FAIDHQLVDG DALVFQLVSP KEFKVFIIRA NEDEEKENDQ EDNEEKENDK EENADDLKNI DATPLDNIAK RTRASRK // ID B9RYJ8_RICCO Unreviewed; 470 AA. AC B9RYJ8; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF43707.1}; GN ORFNames=RCOM_0813730 {ECO:0000313|EMBL:EEF43707.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973830; EEF43707.1; -; Genomic_DNA. DR RefSeq; XP_002518782.1; XM_002518736.2. DR GeneID; 8275319; -. DR KEGG; rcu:8275319; -. DR InParanoid; B9RYJ8; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 114 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 434 468 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 470 AA; 53157 MW; 10206B58A8C6F567 CRC64; MDAIKEHELE EDQPSPSPPK SSRQFTVYTY PKHKTKKRKS HIIKIKRPQI HQDSPKPSSP STELVLYNNS SKSTSYKQKR VVVNEFYDNT ETKSSPTERA KELQASLDSS FPSFAKCLVR SNVKVGFWMH LPMPFCKLHL PKNDTVVSVE TENGQEYKIN YIAERTALSG GWKAFCSSNQ LHEGDVLVFH LLEPLRFKVY IVRGTVSAEA NAEVEKVEAP EKQTRSVCLT IKDQAEIDGK NNERVKEEEE EKSLMVLDEG HGMDQPENGT EGHPDSKALE VIASSGSGFD FKDVDSIESF SIVINGLAID SEISDHQRTK YYELCCSQNS FLHENLLKSI NYKLATEIII GTVNISEAIR ASKLSCSNAD FAVWDKTLKG FELLGMNVGF LRSRLSRLMT LAMESEEAVE SESREVRQGQ ARVNEEMQSL AFKLLELKEA RDMLDAEIES LKANAERHEH KFQEAVNAPW // ID B9RYN1_RICCO Unreviewed; 694 AA. AC B9RYN1; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1311830 {ECO:0000313|EMBL:EEF43383.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973832; EEF43383.1; -; Genomic_DNA. DR InParanoid; B9RYN1; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 582 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 77446 MW; 73462B423DBA736F CRC64; MAANRVGSFS QGNSEGSCGD DLYTELWKAC AGPLVDVPKD GERVFYFPQG HMEQLEASTN QELNQRVPLF NLPSKILCRV INIHLLAEQD TDEVYAQITL LPESDQTEPT SPDPSPAEPS RRPAVHSFCK VLTASDTSTH GGFSVLRKHA TECLPQLDMT QPTPTQELVA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGENG ELRVGVRRLA RQQSSMPSSV ISSQSMHLGV LATASHAVAT QTLFVVYYKP RTSQFIISLN KYLEAINNKF SVGMRFKMRF EGEDSPERRF SGTIVGVEDF SPHWLDSKWR QLKVQWDEPA SIPRPDKVSP WEIEPFSASA PSNISQPVPL KNKRPRPPIE VPTLDLSSTA SPLWNSRLTQ SHDLTQLSVT AEGKRNENHI MWHHKQNDIN SHSNSISRTQ TEGGWLSSPL VNVSQHLFQE VTEDSKSVSN WPVVSGYSTP QSSKLNDSIL DPVEKGRKSD VATSYRLFGI ELINHSASSL PTEKAPAQPL SVSSGTTEAH VVSTLSAADS DQKSDISKER KPEQLHVSPK DAQSRQSSAS TRSRTKVQMQ GVAVGRAIDL TMIKGYNQLL DELEEMFDIK GQLHPRDKWE IVYTDDEGDM MLVGDDPWPE FCNMVRRIFI CSSQDVKKMM PGSKLPMFST EGEGTVISSD SADN // ID B9RYX9_RICCO Unreviewed; 406 AA. AC B9RYX9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Transcription factor, putative {ECO:0000313|EMBL:EEF43481.1}; GN ORFNames=RCOM_1314720 {ECO:0000313|EMBL:EEF43481.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973832; EEF43481.1; -; Genomic_DNA. DR RefSeq; XP_002518948.1; XM_002518902.2. DR GeneID; 8288881; -. DR KEGG; rcu:8288881; -. DR InParanoid; B9RYX9; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 44897 MW; 628C4A9C8AAF5E2A CRC64; MEIGSAAGII STEEEQMSKG KHLPFSYSSS SSPSSSSSQH KPHHLLALSQ IYDKNHHPQV GSWLGSKYDP EQEDAGSAAG IFEEEEGSGE GECGVVIQKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSTNDKGL LLNFEDKTGK AWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR GVGEAAKDRL YIDWRRRPDG PHHQPTHRHQ QHHLSSIPWS PLLMRPPPVP RDHFHLSNPN YYNSSGGGGG ASAYGFGYGY NSSNNYNYNS NVGSSNSGTI IYMRSPQQAG MVQWQQAAAS SGGFMEPMVF ESVPVVQGKA AAKRLRLFGV NMDCPISDSD HECDKLSTST PIPAMAAALQ QPSHHPLQLR LYNGTPLPSP QFLHKGKSSM SLDLDI // ID B9RZG4_RICCO Unreviewed; 189 AA. AC B9RZG4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 12-APR-2017, entry version 32. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF43344.1}; GN ORFNames=RCOM_0939050 {ECO:0000313|EMBL:EEF43344.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973834; EEF43344.1; -; Genomic_DNA. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 102 175 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 189 AA; 21411 MW; A1991DDFFAFC2675 CRC64; MGDDASSEIL DSNPNPSASK CTSRKMDYTL PPKNLPTPIY AAFGDKQEYQ RTGKSCKMEE EDDMVQNGNF NDAKSKAKFE IFTSIKFHST LSRMPQESKN AVEKIVPASF ARIYMRGASK DIRVKSSKGD GRERAVQSDW IRRGGCLRLN GWAEFYNDNY LVEADVCLFE LIHMRNIVLK ASVFPAYLE // ID B9RZG5_RICCO Unreviewed; 109 AA. AC B9RZG5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 41. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF43345.1}; GN ORFNames=RCOM_0939060 {ECO:0000313|EMBL:EEF43345.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973834; EEF43345.1; -; Genomic_DNA. DR InParanoid; B9RZG5; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 91 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 91 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 109 AA; 12884 MW; 14D707C039D3A588 CRC64; MDGIFNFEHL QGLPLKFVKE YGNELANIAK LTVSSNGRVW RVGLTKERNH TWYLHNGWHE FASYHSICYG YFLVFEYKGM SNFKVFIFDM SACEIPYWCN KDPPSNMKQ // ID B9RZG9_RICCO Unreviewed; 545 AA. AC B9RZG9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF43349.1}; GN ORFNames=RCOM_0939100 {ECO:0000313|EMBL:EEF43349.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973834; EEF43349.1; -; Genomic_DNA. DR RefSeq; XP_002519138.1; XM_002519092.2. DR RefSeq; XP_015574586.1; XM_015719100.1. DR RefSeq; XP_015574587.1; XM_015719101.1. DR RefSeq; XP_015574588.1; XM_015719102.1. DR GeneID; 8275548; -. DR KEGG; rcu:8275548; -. DR InParanoid; B9RZG9; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 313 407 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 444 538 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 313 407 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 444 538 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 62727 MW; 2C46E558DDDF46B5 CRC64; MALHREMKSN GDDRRRLPHS PAEKPLRHFF KIILPSNLND MKLRIPTKFV RNFGNELSDV ANFITPNCRL WKVGLRKVHN DIWFDDGWHD FVKHHSICIG YLLVFGYRGF SDFSVFIFDV SACEIEYPCN DQGLVHGEKC RIQNQVEVED DNPTDVFGSG ILSPSCSSLK SKVCDASASK EEPSKEVAPA EQNLGMKKRS RVVVLGGHPY LKRNYETRSK KVKVEQLDQL TNIDANESRK GTLDRYEMSW SHEVNELQDR SRSRVKSGEN QLLPRCEEDI EIITSEMFEV MKFSPGSMRA IHAARKYSPK HPSFMVVLYP YNCCNNVLYV PRGFSEKYLS EAPNYLILEV SDGREWQVRV RKNCRRLDLG RGLTAFFRDN NLKAGDVCIF ELIKNTEVMK ASLFHAVQDD LEIITSETCE STNVSAESKK AIDAARMYKP ANPSFMVVLR PYNCYDHGLS VPRIFSKWYL WRARKCIKVK VSDGREWTIC LQKSCKHLVF QMGWKEFCKD NNLKAGDVCV FELITKNRVL KASIFHANQD AGPEN // ID B9RZH1_RICCO Unreviewed; 591 AA. AC B9RZH1; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 47. DE RecName: Full=Sulfotransferase {ECO:0000256|RuleBase:RU361155}; DE EC=2.8.2.- {ECO:0000256|RuleBase:RU361155}; GN ORFNames=RCOM_0939220 {ECO:0000313|EMBL:EEF43351.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the sulfotransferase 1 family. CC {ECO:0000256|RuleBase:RU361155}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973834; EEF43351.1; -; Genomic_DNA. DR InParanoid; B9RZH1; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008146; F:sulfotransferase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000863; Sulfotransferase_dom. DR Pfam; PF02362; B3; 2. DR Pfam; PF00685; Sulfotransfer_1; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transferase {ECO:0000256|RuleBase:RU361155, KW ECO:0000313|EMBL:EEF43351.1}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 254 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 254 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 591 AA; 67670 MW; 92410C3AA291DDC3 CRC64; MSKEMGPEEG SNSPARTNCM FYKLIVASIL HDKKLRIPEK FVKKYRDELS CIATLTVPNG RIWVVELEKV NKKLWFCSGW HEFVEYYSIR VGYFLVFRYE GESNFRVCIF DLTVSEIRYP GNCVPASSQV PCHDNPCHVA HKKHVVTNGP TGILGSGNPS HTTAPSRSML FDKFVHSKWT VTGNYEASRE MLLSRKDAYD SQDIDVQLNG MDKRSPSMKI ACEALTRRWR AVTPEEKQRT ICAAHTFKPD NPFFRVILRP SYVYRGFLLH IPSSFAQRYL TTTGCMTLQV SEGKQWPVRC VCRNRGAKLS KGWTEFAWDN NLEEGDVCVF ELINMNVLKV TIFRLLPHHL TSITKKIKQP QKGCRNYQEL IPTPPKGKAG GLNISSSIKA FWLPSKPALK GLLLLQDHFI SKPHDVILAT SPKCGTTWLR ALIFAVLNRH SCDFSTHPLL TGNPQELFLS WRLTYIRMNP LLILTIFHHL AFSLRTSPTL CSQNLCQLLI VGVSHYGTYW DHVLSYWKAR LEASHKVLFL KYEDMKREPS VHVQRLADFL GNPFSMEEKS KGVVEETIEL CSFENLSSLE VNRSTDSQVF Y // ID B9RZH6_RICCO Unreviewed; 333 AA. AC B9RZH6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF43356.1}; GN ORFNames=RCOM_0939270 {ECO:0000313|EMBL:EEF43356.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973834; EEF43356.1; -; Genomic_DNA. DR InParanoid; B9RZH6; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 316 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 316 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 38713 MW; A8B39DBEA7928F79 CRC64; MPRPYFHKLI LSNSIKDKKL RIPDNFVKKF GNDLSAFGRL SVPGGPVWPV GLIKADDKFW FREGWQEFME RYSIRVGYFL VFRYEGHSVF TVHIFNLSAS EINYQSNNTA GRRYLLFEDM EDDDFVEHLS SSSPCLVPNS LKSDVRYYTP DAEAQKPKKR GRKKLKVDPN QQQPSAQQED EVDMRFRFYE SASARKRTVT AEERERAINT AKTFEPMNPF CRVVLRPSYL YRGCIMYLPS CFAEKHLNGV SGFIKLQSSD GKQWPVRCLY RGGRAKLSQG WYEFTLENNM GEGDVCVFEL LKSRDIVLKV TVFRVLEGAG RMTQTLTTKY EQR // ID B9S0L2_RICCO Unreviewed; 702 AA. AC B9S0L2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1355780 {ECO:0000313|EMBL:EEF42945.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973837; EEF42945.1; -; Genomic_DNA. DR RefSeq; XP_002519531.1; XM_002519485.2. DR GeneID; 8284524; -. DR KEGG; rcu:8284524; -. DR InParanoid; B9S0L2; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 616 699 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 702 AA; 77133 MW; 0BF0A9EC84CC9A8F CRC64; MITFMEAKER VKEKEMEKCL DSQLWHACAG GMVQMPAVNT KVFYFPQGHA EHASGSVDFR NFPRLPPYIL CRVSGIKFMA DPETDEVYAK IKLTPICSKE NGMEDEEEGV INGGEGQENK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTILAKDVH GETWKFRHIY RGTPRRHLLT TGWSTFVNHK KLVAGDSIVF LRAENGDLCI GIRRAKRGVG GGPESSWNPA GGNCVMPYGG FNSFFREDGN KLSRSGNGNG PGENALTGKG KVKAESVIEA ATLAANGQPF EVVYYPRAST PEFCVKASMV KAAFQIRWCS GMRFKMAFET EDSSRISWFM GTIASVQVAD PLRWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP VIHLSPFSPP RKKLRMPQHP DFPLDSQFPL PTFSGNLLGP TSPFGCLPDN TPAGMQGARH AHYGLPLSDL RLNKLQTSLF LAGFPPPLDH SATHSISSNG PTIVKPSMSE SVSCVLTMAR STQNSGKPDN VKTPQLVLFG QPILTEQQIS LSSSGDTVSP VLTGNSSSEG NLDKIANFSD GSGSALHQQG LPEHSSYEGF QWCKGNRQET EPSLETGHCK VFMESEDVGR TLDLSLLGSY DELYRKLADM FGIENSETLN NVLYRDIAGI VKHIGDEPFS DFMKTARRLT IIMDSSSDNV GL // ID B9S1E4_RICCO Unreviewed; 1109 AA. AC B9S1E4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1657600 {ECO:0000313|EMBL:EEF42609.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973843; EEF42609.1; -; Genomic_DNA. DR RefSeq; XP_002519813.1; XM_002519767.2. DR GeneID; 8284573; -. DR KEGG; rcu:8284573; -. DR InParanoid; B9S1E4; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 997 1081 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1109 AA; 122194 MW; 93DA1DAF80CEDF0A CRC64; MKTPPPNGVG VATAAASAST PNPTEGVEKK SINQELWQAC AGPLVSLPAA GTHVVYFPQG HSEQVAASMK KDVDAQIPNY PNLPSKLFCL LHNVTLHADP ETDEVYAQMT LQPVPSFDKD ALLRSDLTLK SNKPQTDFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELV ARDLHDNIWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDDK QQLLLGIRRA NRQPANLSSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVC SNQISLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR NRVSIWEIEP VTAPFFICPP PFFRSKRPRQ PGMPDDDSPD LDSIFKKTMP WLGDDIYMKD PQSLPGLSLM QWMNLQQNPS LANSMQPNYM QSLSGSVLQN LAGADLSRQL GFSAPQLPQS NNLQFNAQRL PQQAQLLDQL PKLQSLLNPL GTIIQSQQQL GDTSQQSRQN LATQNIPSSQ VQAQILQPQT LVQNTNMLQQ QPSLKSHQLP RNHPQSMQQQ QQSQQQHIMG QNQQPNVIQS QLPDQVSQHL QMSDNQYQHQ LLQKLQQQQQ SLLALQSLQQ PSQFMQLQDP QRQLLEASQT FSRPTLPNQL PEMPQTTPTS LPQSNIQQQM TKNSSQTSGR FSQLPQQLKF QQQPGILSEM AGDMGLPPSS AINQHSTAGS SILCAAAGAG LSGVTEEVPS CSTSPSTNNF ANAVQPMMSS LAHQSTTLGE DMAQSAATLL SPGALEPISC NANIIKDIQQ KSDIKPSLNM TKHQNQGFFT PQTYLNAATV QTDFLDTSSS TTSVCVSQNN NSSSCNPQSM LLRDTNQDGE LPADPRNNVP YGSNVGGQVG VSLNSDHGLT KGIVGLGKDF SNNLSSGGML ANCENAKDPQ NELSSSMVSQ SFGVPDMAFN SIDSTINDSS FMNRGPWAPP PQFQRMRTYT KVYKRGAVGR SIDITRYSGY VELKQDLARR FGIEGQLEDR QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGNSGLPNQA CSSSDNGNA // ID B9S568_RICCO Unreviewed; 551 AA. AC B9S568; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 43. DE SubName: Full=Abscisic acid-insensitive protein, putative {ECO:0000313|EMBL:EEF41288.1}; GN ORFNames=RCOM_1721890 {ECO:0000313|EMBL:EEF41288.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973868; EEF41288.1; -; Genomic_DNA. DR InParanoid; B9S568; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 409 513 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 409 513 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 551 AA; 60978 MW; 43A8305C89613EFB CRC64; MKGFHLHVED LLKSETNPTG ITGCFDTMDA MEEEQAIGDC YGGCGDGGDT QLQGATAASS DDLAMVFLEW LKSNKETVSA EDLRKVKIKK ATIECAAKRL GGGKEAMKQL LKLILEWVQT NHLQKRRMKE SSCTNNLSYQ CQDPLQNPNP NPCLNPNNSN CNSIPPEQST PCFTQSPWIA PPPYVSDPST VMPGFSPMVG YVGDQFGNGT STMAGHSYPP PQPAEYHMLD SAQSWPASQF ALASQYSPYP DNNLQPIPGH GQVFTGYGNQ YPCQYLPGQG GDRLMRLGSS ATKEARKKRM ARQKRFLSHH RNHNHHSNQP NQHQNQGADE HARLGNDNGV PATPQANHPG NWVYWPTAPP THGAVSAAPV LPVRTADRPA MQTAQNQRQQ AASDKRQGWK PEKNLRFLLQ KVLKQSDVGN LGRIVLPKKE AETHLPELEA RDGISIAMED IGTSRVWNMR YSFRFWPNNK SRMYLLENTG DFVRTNGLQE GDFIVIYSDV KCGKYLIRGV KVRQPGPKSE SKKAGKSQRN AHANASSSST SLRQAETQTV K // ID B9S617_RICCO Unreviewed; 854 AA. AC B9S617; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Transcription factor, putative {ECO:0000313|EMBL:EEF40926.1}; GN ORFNames=RCOM_1063050 {ECO:0000313|EMBL:EEF40926.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973877; EEF40926.1; -; Genomic_DNA. DR InParanoid; B9S617; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 325 426 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 536 586 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 325 426 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 93941 MW; 314F38B0ED2DAB8B CRC64; MAASAPTSSV SATSKKCFNS DCTEFKIRKG WRLRAGDFAE LCDRCASMFE EGRFCDTFHL NATGWRCCES CGKRVHCGCI VSNNAFMLLD AGGIECMACA RKNIVLSSNT PWPPPLFYNT PLSERFKDLS VKGLGQLAGS GPVPWRQAPS LFNSPISHSE LQPRALYEID RLATGERSSA PALEKGRMDD FSERLINGSL KLGAGIEEKP GSCLGIPHQP SSLREDPSTA QRMVIPFASL NEPNISAVSG TPLRQPAPPP SLPKQFHGNL HNGVDSSIDT HIRNGRPRVD ARARSQLLPR YWPRFTDEEL QQISGNSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPPISHPEGL PLKVQDAKGR EWIFQFRFWP NNNSRMYVLE GVTPCIQNMR LQAGDIVTFS RLEPEGKLVM GFRKTSNVPS SDQAELADSS PWSKVDKSGY IAKEVLEAKS SIRKRKSSTL GSKSKRLRIE NEDMIELKLT WEEAQGLLRP PPDHIPSVLV IEGYEFEEYE DAPILGKPTI FATDNSGQKV QWVQCEDCFK WRKLPANADL PSKWTCTGNS WDPERSLCSA TQELTAEQIE DLLPSCNIVA SKKLKAAKQE TENVEALEGL DTLANLAILG ENEALPASSQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCQTV KRRFKTLMMK REKKQSEKEA ETTRKKQQQP LPEKLLDDDP SPSSNTGSSS PNKKKVFSEG SDDDPNRMKS STSPFKGQID LNIQPEREEE LSPGSDSGSM MKMIQGATER YLRQQLLLSS DGDTVSAGKQ ALAGHAMGEE VGNGITLGSS LQDPDKDNST TFSTKVPASS PAIG // ID B9S8P6_RICCO Unreviewed; 306 AA. AC B9S8P6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF40049.1}; GN ORFNames=RCOM_0603540 {ECO:0000313|EMBL:EEF40049.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973892; EEF40049.1; -; Genomic_DNA. DR RefSeq; XP_002522365.1; XM_002522319.2. DR GeneID; 8260561; -. DR KEGG; rcu:8260561; -. DR InParanoid; B9S8P6; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34653 MW; CCF31A418B9D9A59 CRC64; MEMAMKPTQN PDRKITFFKV LMGDYMEKIM IPPAFVMKYE KIMPETIKLK SYNVGKSSMV SVKSNDDGFF IKHGWKKFVK DHNLEVGDFL VFNLVNDTTF EVLIYGPTCC LKKIKLADDD DHVDQNKNST SKFTSTASGS KQISFKKRAC PKLSQFKRPR GSAKKTGKKA KRPRIFKGKT EVNKKESIAE EETKHPCVKL VLKEYQKYNV VVPRRFADKI GLQNKRKTVI EDPLGRQWPV FVNLVGGNQV HLSTGWSAFY QANRLVTGDI LSLHSRQVHG NLINVEIQKG GGEIAKAEPA LLPKTG // ID B9S8P7_RICCO Unreviewed; 145 AA. AC B9S8P7; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 41. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF40050.1}; GN ORFNames=RCOM_0603550 {ECO:0000313|EMBL:EEF40050.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973892; EEF40050.1; -; Genomic_DNA. DR InParanoid; B9S8P7; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 145 AA; 16978 MW; 7E8C965C59AFE3BA CRC64; MVLHLVVQWL GVRIGLTENL EVRNFKQLTW EDNAGAYQAL EAANNFISSY PFYKSVVHVD CERRSFVTIP VRISKEHFQF ESSIFTLRFA ERSWHVKVIN YRKLTKICAG WAAFTKANYL KEGDVCIFEL IENHVLNVFT FECVH // ID B9S8P8_RICCO Unreviewed; 291 AA. AC B9S8P8; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF40051.1}; GN ORFNames=RCOM_0603560 {ECO:0000313|EMBL:EEF40051.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973892; EEF40051.1; -; Genomic_DNA. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 236 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 236 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 32468 MW; 358160C0AE940C09 CRC64; MIETSDANSA YSTQRGKSPL PCSQPRKKMR SDETGNTVAT SNSETLSSKR KVNLNSYSPE FKVRRVAAPS ANSSFSDRSL PLINPIYLAN GYLNLNQVIG RINVAMPRSN LSKCKDKQLS HERKAAGGQP SEGPPCLRIV SAAESANNFV SKHPFFRVVM RSTYLNDYVI VFRYIDSSKA KLEQKQGSSG TAHLQSSMMG STSYAYCNSG HHYASTNKLC KKHMQHQNKN ITLQFEGRTW SATFCSLTNR IRGGWKSFVR NNSLREGDVC VFELIDSRKA LVKVSIFRSE N // ID B9S8P9_RICCO Unreviewed; 280 AA. AC B9S8P9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF40052.1}; GN ORFNames=RCOM_0603570 {ECO:0000313|EMBL:EEF40052.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973892; EEF40052.1; -; Genomic_DNA. DR RefSeq; XP_002522368.1; XM_002522322.2. DR GeneID; 8260564; -. DR KEGG; rcu:8260564; -. DR InParanoid; B9S8P9; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 71 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 71 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 32039 MW; 7AFFB2B502A7499A CRC64; MQLNGTAPEN ATLKDHNGRI WDVQLVKTER KLIIEEGWKA FASHHFLVDG DFLVFKFDMN SQFFVKIYSR NGLEKRNVLS IKDSVKEEAD TESEVENARN KSTGGCKRKY SEMESKQTQR SAGRSKGTNS KLGRTKGSSG ERTSSLRQIR ATNSGISKNI KASSYIKPQK PSFEMIMTRS TRYTVYVHRL VVKTHNLKLQ ENMKLRGESG KFWPVKVCFR TDGRIIINNG WAAFHRKHKV AIGDTCVFEF IPAENNMVKE IQVQILRKPV NHTKKEALRA // ID B9S8R1_RICCO Unreviewed; 494 AA. AC B9S8R1; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF40064.1}; GN ORFNames=RCOM_0603690 {ECO:0000313|EMBL:EEF40064.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973892; EEF40064.1; -; Genomic_DNA. DR InParanoid; B9S8R1; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 67 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 399 493 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 67 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 399 493 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 494 AA; 56848 MW; FF885C29B94E7180 CRC64; MTLSEVANFV VPNGHAWKVG LSKVHNDIWF NDGWHAFVEH HSICNGYLLV FGYSGFSNFN IIICDATACE IEYPCNDRGP ICSKKCLIPN EAEAEDDTSI NISSSRILSL SSSSLKSKVS DASATQGESS KRPPVLGKNP GMKRSRDVAF AVSPNSKYHY ETRDKKIKME QLAELTDVDA NESRRGKLDK HRLSYSHELN ELLDGKRSKV KSGEIQLEQK CEGVETITSE NLFAKYIPMG FSRRDNNLKA GDVCVFELIN NNMVNEGMQK FTVDIKLLLQ NTDRFPSISF LATSKMIPVQ FMRDYSNVLL NEVNLIIPNG LAWRIGLTKS ENRIYFHRNW NDFMEHYSIR EEHFLVFEFI GFFTFGVRIF APSGCKAITS PENERAVDAC RKFRTERPCF KIILRELNLR SHTAYVPAQF AREVLKEAPR FFKLQVPDGR EWNVKANQRT CKRMNFGKGW IAFRRENDLK ENDVCVFELI RKNVFKVYIF RDKE // ID B9S929_RICCO Unreviewed; 730 AA. AC B9S929; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1011410 {ECO:0000313|EMBL:EEF39798.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973895; EEF39798.1; -; Genomic_DNA. DR InParanoid; B9S929; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 730 AA; 80564 MW; 11A078DD172EC5E6 CRC64; MVGIIDLNTT EEDEKTTPSS GSFSSPSSSS STSAALSATN LSSAPVSGSV CLELWHACAG PLISLPKKGS VVVYFPQGHL EQLPDLPLAV YDLPSYIFCR VVDVKLHAET ANDEVYAQVS LVPDSEQIEQ KLKQGKLEGH CEEEDVEAVV KSTTTHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QQRPSQELVA KDLHGFEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGDDG ELRLGIRRAA QVKCGASFPA LCSQQLNQST LTDVVHAMSM RSLFNICYNP RASSSEFIIP LHKFLKSLDY SFSVGMRFKM RFETEDAAER RYMGLITGIS DLDPARWPGS KWRCLVVRWD DMETNRHSRV SPWEIEPSGS VSSCNSFMTP GLKRSRSGFP SSKPEFPVPD GIGASDFGEP SRFQKVLQGQ EILNFNTLYD GVDQNRHPSD IRRCFPGSRS SMIATTRNGA RDPVVNSDVS YKSIGFSESL RFHKVLQGQE IIPSSPFGRA PASTNEACEN GCFGISDGVQ MTSSRNGWSS MMQGYNTRIR PPAQVSSPCS VLMFQQASNQ VSNPSPRYGF NDLEEQGVNT QSWFHNPETC GEKRMSSSRS EHIFRRNNQW GMDSFSLSHE HSQHGLLQPL VAQPPCKGGQ DLVSSCKSSC RLFGFQLTED RHVANKDDSS IPMASLNAGS FMPHAGEQFH LKPPAITNAV GSSCTKVSVL // ID B9SBF6_RICCO Unreviewed; 667 AA. AC B9SBF6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0716960 {ECO:0000313|EMBL:EEF39042.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973914; EEF39042.1; -; Genomic_DNA. DR InParanoid; B9SBF6; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 552 633 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 74785 MW; A6B2727FF2299320 CRC64; MLRVIISGVV RFLMAKEDEM ICIQSYGRHV QVHWWRYQDL EREFSTFLKV TWNRVLWSQS ISDYLQLEAS TNQELTQQIP KFNLPSKILC RVVHIHLLAE QETDEVYAQI TLHPEVDQTE PTSPDQCTPE PQKRPVHSFC KILTASDTST HGGFSVLRKH ATECLPPLDM NQSIPTQELV AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRSDN GELRVGVRRL ARQQSPMPSS VISSQSMHLG VLATASHAVT TQTLFVVYYK PRTSQFIIGL NKYLEAVNHG FSLGMRFKMR FEGEDSPERR FMGTIVGVGD FSPEWSGSKW RSLKIQWDEP ATVQRPDRVS PWEIEPFAAS ASVNLPQTVG KSKRPRPVDT TASDNCLLNG SSCSSRVRSE GIWPHSPHMD VSLSLFSDSA DDNRTITTQS VISGYAPAFP SRQSNSLVHE QVEKGKKYEN SVGCRLFGID LISNSSTAAP PEKESLGLKM DSNGPRGSAP AVDGTDEAQN VDVSKASKEQ KEAASEVMPK ETHSKPGTTS TRTRTKVQMQ GVAVGRAVDL TALKGYGDLI KELEELFEIK GELSTREKWA VVFTDDEGDM MLVGDDPWRE FCKMVRKILI YSSEEAKKLK TRCKLLASSL EGEGAIASLD SEHRSDT // ID B9SC43_RICCO Unreviewed; 529 AA. AC B9SC43; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF38757.1}; GN ORFNames=RCOM_1407360 {ECO:0000313|EMBL:EEF38757.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973919; EEF38757.1; -; Genomic_DNA. DR InParanoid; B9SC43; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 472 513 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 529 AA; 59068 MW; 8D18A08C0C3AA4FE CRC64; MEETVKMEAE EGNLNRTTSF EEENLKSVRE EDVTLAQLSF SSPSSPPRPL ASFSAGMERS EKRVKVKRRY SDSKTKHAIT GHAGKCICCG KSKPAIDRLT NPGEVKSAAM IRAEEVQSNL ESTYPSFVKS LVRSHVGSCF WMGLPGPFCR AHLPREDTVV FLEDECGKVM GMKYIGYKTG LSAGWRQFAV AHQLLEGDVL VFQLIGPCKF KVYIIRANDL AEVDGALGLL TLDPQIKQND AGKLVDVFVL QNFLSCMSLL TDPYCIWMPK IETIKDNAEM ATVACTSAKR KRPRSLPLAV VQKNNKKSSR SRLSVPKTGQ LAEQSENDSE EVGSEVLEGF KLSLPAVQFE DVKSFENFNI LVDGLVLDSE LSEDIRRKYY KLCCSQNAFL HESLIKGINF KLIAGIISET VNIADAIRAS NLTTSSDEFD TWDKTLNASE QFGMKVGFLR ARLSQLVSLA FDSEGATKTR RYIEARTERV NTEDEIRNLE AKLEELKAAN EKFGADIESL KLKAESYEIK FQEEVLAPW // ID B9SD76_RICCO Unreviewed; 861 AA. AC B9SD76; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Transcription factor, putative {ECO:0000313|EMBL:EEF38432.1}; GN ORFNames=RCOM_1163180 {ECO:0000313|EMBL:EEF38432.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973926; EEF38432.1; -; Genomic_DNA. DR InParanoid; B9SD76; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 327 428 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 561 611 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 327 428 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 861 AA; 94578 MW; BE576DBBDBB15284 CRC64; MGSKICMNAS CGVTKTHEWR RGWTLRSGGY ALLCYTCGSA YENSVYCDTF HLEEPGWREC YNCNKRLHCG CIASKSLFEL LDYGGVECTG CVKSSQLHSI HGDEIPKGFG SLTLNNAGDP DSIPLENRAT NGALDDGRLA QLCRLMEANE PQLLCQSEGA DTNAGLGQFR QEEVMHPIGE AGTSFSIASQ SSVVPSKFPN GGRSILDMRD MHGSHAQPSL NMALGAPSGT TSFIQYACGA VDGREQGKTP PFLQGQRSRP ILPKPSKTGF SGSSDTNKTA VTELRIARPP AEGRGKNQLL PRYWPRITDQ ELQQLSGDLN SNIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQSE GLPLRIQDVK GREWTFQFRF WPNNNSRMYV LEGVTPCIQA MKLRAGDTIT FSRIDPGGKL VVGFRKATNN SLDTQDAQTS ALPNGAASAE TSFSGTVTVS ADGDTGGNKS ENYGGRINGD AVQQSTAEKK RTRNIGPKSK RLLMHSEDAL ELRLTWEEAQ DLLRPPPSVK PSIVTIEDHE FEEYDEPPVF GKRTIFADRP SGGQEQWAQC DDCSKWRKLP EDALLPPKWT CLDNVWDSSR CTCSAPEEMN PKDLDTLLRG SKDFKRRRMA DRHKPSSECE PSGLDALASA AVLGDNIGDL GEPSVGATTK HPRHRPGCTC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMLRKKKRQ SEREAEISQK DDNDRKDEFA MIGRLSHAVL NLNNSENEGN YNRKQTEIPE TSSGQIDLNS HPNREDMQLD IQGLSMMNLA NAANLPFDNY VKQNGLADFL CERQASMGSC LHSQNNGESL IRLSDEAFLA SVGWNHESKG D // ID B9SEJ0_RICCO Unreviewed; 371 AA. AC B9SEJ0; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=DNA-binding protein RAV1, putative {ECO:0000313|EMBL:EEF38020.1}; GN ORFNames=RCOM_0705620 {ECO:0000313|EMBL:EEF38020.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973936; EEF38020.1; -; Genomic_DNA. DR RefSeq; XP_002524409.1; XM_002524363.2. DR GeneID; 8269518; -. DR KEGG; rcu:8269518; -. DR InParanoid; B9SEJ0; -. DR KO; K09287; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:EEF38020.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 122 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 204 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 122 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 204 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 371 AA; 41663 MW; 86514840D3B35460 CRC64; MDGSCIDEST TSDSISITPT SNISPSSNPL PSKSPESPLC RVGSGTSVVL DSESGIEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AAKAYDIAAQ RFRGRDAITN FKPQATDHQS EEDEIETAFL NSHSKAEIVD MLRKHTYNDE LEQSKRNYTS NNGRGDKFQN RTNMNNVGLS GSERIIMKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQSGSNSTK GVLLNFEDIT GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDIVRF LKSTGPDKQL YIDWKVRTLT PTVSNPVVCS VQPVQMVRLF GVNIFKVPGN SHIEGCNGKR IREMELLSLD CIKKQRVIGA L // ID B9SJM6_RICCO Unreviewed; 826 AA. AC B9SJM6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0764880 {ECO:0000313|EMBL:EEF36199.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973986; EEF36199.1; -; Genomic_DNA. DR InParanoid; B9SJM6; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 725 809 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 826 AA; 92326 MW; 4A3FB3538BDFBE4E CRC64; MKLSTSGLGQ QGHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT FLPMELGMPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTIFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLRRPWHPG PSSLHDNRDE AGNGLMWLRG GTGDQGLHSL NFQAVNMFPW SQQRLDPALL GNDQNQWYQA MLASGLQNGG NGDPLRQQFM QFQQPFQYLQ QSSSHYPLLQ LQQQHQAIQQ STSHSILQAQ NQISTESLPR HLLQQQLSNQ PENQAQQQQQ QQQHNYHDAL QMQGEQLQRQ QSNVPSPSFS KTDFMDPGNK FSASTTPIQN MLGSLCAEGS GNLLDFTRTG QSTLTSLTEQ LPQQSWVPKY AHSQTNAFGN SVSLPRSYSE KDPSIEPEHC NLDAPNATNF GVNIDSSGLL LPTTVPRFST SSVDADVSSM PIGDSGFQSS IYGGVQDSSE LLPSAGQVDP PTLSRTFVKV YKLGSVGRSL DISRFSSYHE LREELAQMFG IEGKLENPHR SGWQLVFVDR ENDVLLLGDD PWEAFVNNVW YIKILSPEDV QKMGEQGVDS FSQNIG // ID B9SK50_RICCO Unreviewed; 810 AA. AC B9SK50; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_1400470 {ECO:0000313|EMBL:EEF36040.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ973998; EEF36040.1; -; Genomic_DNA. DR InParanoid; B9SK50; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 666 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 810 AA; 89964 MW; AC55F405B6757003 CRC64; MEIDLNHAVT EVEKNNNAFY TNNGDSSSSS CSSNSSQSPV TSSIYLELWH ACAGPLTSLP KKGNVVVYFP QGHLEQVAPS SPFSPMEMPT FDLQPQIFCK VVNVQLLANK ENDEVYTQLA LLPQPELVGP NLEVKELEEL GVDEEGGGGL PAKSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLVSG DAVLFLRGED GELRLGIRRA VRPRNGLPDS VIGKQNSYPS VLSVVANAIS TKSMFNVLYS PRASHADFVV PYKKYMKSIM NPVCIGTRFK MRFEMDDSPE RRCSGVVTGI SDLNPYRWPN SKWRCLMVRW DEDIGNDHQE RVSPWEIDPS VSLPPLSIQS SPRLKKLRTS LQATPPDNPI TGGGGFLDFE ESGRSSKVLQ GQENVGFVSP LYGCDTMNRP PDFEMRSPVH QNLVSTGREK ANIGEITRTR PTTYTGFAET DRFPKVLQGQ EICPLRSLTS KGDFNLGAWV KRNVGCGSFN MYQAPRRNFY PLGPESLQNV YFPYGDVYKT GQDARMRSYA TNFPRENFQF GAPSIQAGVS RDEVGKPNQL SDLKTQEPGS ASPALGVNLR SQKDNSFGGT SSGCKLFGFS LTAESPNPNS QNSGKRSCTK VHKQGSLVGR AIDLSRLNGY SDLLSELERL FSMEGLLQDP NKGWRILYTD SENDVMVVGD DPWHEFCNVV SKIHIYTQEE VEKMTIGVIG DDTQSCLDQA HVVMEASKSS SVGQPDSSPH RTYYAQVRIV ALERMVTEVC // ID B9SPB5_RICCO Unreviewed; 620 AA. AC B9SPB5; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0496610 {ECO:0000313|EMBL:EEF34537.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974065; EEF34537.1; -; Genomic_DNA. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 537 620 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 70440 MW; A503934D75E130CF CRC64; MCFKIERNTI WYRQEIHQAE LWCLGGIGCP SWRQVQFQNC CNNALYKELW DACAGPLVTL PREGERVYYF PQGHIEQLGA PIQQQSEHQM ASLNLPSKIL CKVINVQCKA EPITDQVYAQ IMLLPEPEQI DVISPDPPLP EPERCVVHSF RRILTVSDIS SHDHFFVDQK HAEHCLPPLD MSQQLPWQEL VATDLNGNKW HFQHIFQGKS NKHLLTTGWS AFVSSKKLVS GDMFIFLRGE NGELRVGVRR LMGRKTNILS SATSNQIRHS LLAVASYAIS TGSLFCVFYE PRTSRSEFIV SVNKYIEARN HKFCIGMRFL MRFEGEEVPI ERINGTIVSM ETSPRWPDSE WRCFKVRWDE PSLIVHPERV SPWEMENISS SSQPVPRTKR SRSSSPGAME ISPSSTQPGP RIKQLRSTVF LSQTPDFGMW IFPAEVPGFS NCDLYLSSSS STNSKTYSSD FRGDSSQAST SPNRVVYVTE SAPSVNKDFG MEEDGCPVLS LENESDQHSE TANINQSEKL SVISCDTEKL CSKKQITSCA EVRMQGIALG RSIDLTKFKC HEDLIKELEN MFEIEGELSG STKKWLIVYT DADSEMKLVG DYQWEVVCNM VKKILIYRLG // ID B9SPB6_RICCO Unreviewed; 671 AA. AC B9SPB6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 56. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0496620 {ECO:0000313|EMBL:EEF34538.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974065; EEF34538.1; -; Genomic_DNA. DR InParanoid; B9SPB6; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 545 638 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 671 AA; 75134 MW; 0A3404F84A3EC533 CRC64; MPIGQPHTGG CNDALYKELW HACAGPLVNL PREGERVYYF PQGHMEQLEA SMHQGLEPQM PSFDLPSKIL CKVVNVQRKA EPETDEVYAQ ITLLPDPDQS EVTSPDTPLP EPERCTVHSF CKTLTASDTS THGGFSVLRR HADDCLPPLD MSQQPPWQEL VATDLHGNQW HFRHIFRGQP RRHLLTTGWS VFVSSKKLVA GDAFIFLRGE NGELRVGVRR LMRQQTNMPS SVISSQSMHL GVLATASHAI ATGTLFSVFY KPRTSRSEFI VSVNKYLEAR SHKLSVGMRF KMRFEGEEVP ERRFSGTIVG VGDNVSSGWA DSEWRSLKVQ WDEPSSILRP DRVSSWELEP LVATTPSNSQ PVQRNKRARP SVLPSTPDIS SLGMWKPQTE STAFSYGDFQ RGRDLYPSHN FSTSAKTNYL GFSGNSPLSG VSPNSLYRPN RVESVTDSFV PVIDKDSGER RQGSGNGYRL FGIQLVGNSN AEETSPLITT SGMVGDDRPV VSFDAESDQH SEPSNINRSE IPSISCEPEK SCLRSPQELQ SRQIRSCTKV HMQGIAVGRA VDLTRFECYE DLLRKLEEMF DIEGELSGFS KKWQVVYTDD EDDMMMVGDD PWHEFCSMVR KIFIYTSEEV KRLSPKSKLP VNEEIKAAKA DDDVDTTVNM EDRSSIVGPG C // ID B9SR35_RICCO Unreviewed; 318 AA. AC B9SR35; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF33937.1}; GN ORFNames=RCOM_0465210 {ECO:0000313|EMBL:EEF33937.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974093; EEF33937.1; -; Genomic_DNA. DR InParanoid; B9SR35; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 65 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 214 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 65 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 318 AA; 35906 MW; 31D8E4911C526ADD CRC64; MSSPVILEVP GGAVWKVELL ECDGEVWLEK GWRELAEHYS LEYGHFLVFK YEENSHFHVL IFDKSGSEIE YPCNSIFNYM AEPNHDGELQ NHKGGNADDS SIKMLDALSS CQKMGDKFPF LQSCQMRTDS NMSEKLSWSS IHACITTNTP ISTFGPQSSF IKLEKSDSSL QELGGKCARK MCIGSACEQA TSLSSLHTSW ALEAANNFPS KYPSFKVIVR QYHFRHSNVK MPYRFFTSHI ERKAENIMLQ VADRMWPVKL RERSHTVEIN GGWSAFSRSN SLKAGDVCVF ELIKSNVLNQ GEISEFSVIN SVQLTGTK // ID B9SR36_RICCO Unreviewed; 137 AA. AC B9SR36; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 41. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF33938.1}; GN ORFNames=RCOM_0465420 {ECO:0000313|EMBL:EEF33938.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974093; EEF33938.1; -; Genomic_DNA. DR InParanoid; B9SR36; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 137 AA; 15451 MW; 93DEE056A5FCDB08 CRC64; MASQEGREML DKKGISRQAK KPSSFSTCQA PDSANNFISS NYPSFRAVFR HENILSVPFS FVQSHMECET HTVMLKVANK TWPVKLNVYS RKHTAIFSAG WSAFAKQNSL KVGSAYNFEL IKRDEMTVSK FTTCKLG // ID B9SRS4_RICCO Unreviewed; 891 AA. AC B9SRS4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Transcription factor, putative {ECO:0000313|EMBL:EEF33676.1}; GN ORFNames=RCOM_1057510 {ECO:0000313|EMBL:EEF33676.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974103; EEF33676.1; -; Genomic_DNA. DR InParanoid; B9SRS4; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 565 615 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 891 AA; 98497 MW; 8BF24F328981E8DA CRC64; MESKKTCMNA LCGATSNDWR KGWPLRSGDF ALLCDNCGTA YEQSTFCDLF HSKDSGWREC VSCGKRLHCG CIASRFLLEL LDGGGVNCIN CIKSSGINSV SSNHLYGLAN LFYVWDEKPN GFGMSKLDNV SELQSSDNQL DVERKFLRLG NSTEVIATRH LLQLQNDETS VSFRQMKQED NFPPVGEIGS TSFSNLNQAS NGLSLTAKPE TRKATIAAKE LYESLTQTNL SITLGSTFGN PIPFPGAVVD ERTQSKASSP LQQGSRCRHL LPKPPKSALV TGLETNAGMV SQIRVARPPA EGRGRNQLLP RYWPRITDQE LQQISADSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLV MGFRKASNSM AVQSLKGSTD THLSALSKHL HSANGDISWH KSEKHEERTR ESLLLTSLLV PERKRARNIG SKSKRLLIDS LDALELKLTW EEAQDFLRPP PTVKPSIVTI EDHDFEEYEE PPVFGKRSIF IVRAVGGQEQ WTPCDSCCKW RKLPVDILLP PKWTCADNLG DQSRCSCSAP DELTPRELEN LLRLNKDFKK RRITTILRPA QEQESSGLDA LANAAILGDE ADPGTTAVAT TTKHPRHRPG CSCIVCIQPP SGKGKHKPSC TCNVCMTVKR RFKTMMLRKK KRQSEREAEI AQRNQHISGL RDEAEVESSS KHASTPQDPS ENEARSMNEL ESKSQSNNLS NKMVDAGKGH IDLNCQPDRE EESQAGVARM SMMSLLQVAS LPLETYLKQN GLTSLVSEQQ GSSASHVPPQ AGESEGRLPE DCQIASAVQE QESGGEDNYG HGPEESQNDP V // ID B9SVC2_RICCO Unreviewed; 709 AA. AC B9SVC2; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0034710 {ECO:0000313|EMBL:EEF32449.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974164; EEF32449.1; -; Genomic_DNA. DR RefSeq; XP_002529941.1; XM_002529895.2. DR GeneID; 8266270; -. DR KEGG; rcu:8266270; -. DR InParanoid; B9SVC2; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 676 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 77978 MW; 205713AAEE6FA5C7 CRC64; MKEVEKRLDP QLWHACAGSM VQIPPINSKV FYFPQGHAEH SQSPVDFSSR IPSLVLCRVA GVKYLADSET DEVYAKISLF PLPSNELDFG DEIGLCDTST NGTNSTEKPT SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVVAKDVHGE IWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR AESGDLCVGI RRAKRGIGGG NGPESSPPSG WTTNASCVNP YTGGFSLFLK EDESKGLRNG GGIRGKVRVK AEEVLESAAL AANGQPFEVV YYPRASTPEF CVKASSVRAS TRIQWCSGMR FKMAFETEDS SRISWFMGTI ASVQVADPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPVIH LSPFSPPRKK LRLPQHLDFP LDGQFQLPSF SGNPLGPSSP LCCLSDNTPA GIQGARHAQF GISLSDLQLN KLQSGLFLSS LQRFNSHSRV SESFMKSNTN SNENLSCLLT MGNSNTNSEK SDNVKRHQFV LFGQPILTEQ QISRSCSTDA VSQVLSKKLS SDESPEKAKI HDVLGSTPEK QTSPEKSAST GLSWQSLHTT ETGLDAGHCK VFLESEDVGR TLDLSVLGSY EELYSRLANM FGIERSEMLH HVLYRDAAGA IRQTGDEPFS VFAKTAKRLT ILMNPASSDN IGRPWIRGMR STENGLEASN KADPLSIFA // ID B9SVD9_RICCO Unreviewed; 374 AA. AC B9SVD9; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF32435.1}; GN ORFNames=RCOM_0565870 {ECO:0000313|EMBL:EEF32435.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974165; EEF32435.1; -; Genomic_DNA. DR RefSeq; XP_002529958.1; XM_002529912.1. DR GeneID; 8266288; -. DR KEGG; rcu:8266288; -. DR InParanoid; B9SVD9; -. DR KO; K09287; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 107 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 178 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 107 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 178 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 374 AA; 42781 MW; DA56EACCDD4251DA CRC64; MEEEASTSML SNAKNENGTA EVSDSFDSHC HPFPANKRPR LGNNIGAANL AKFKGVVPQQ NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSHRNFPWTD KNIPEPDFQT QYSTEAILNM IRDGSYQPKF ADFLRTQSGR QEQAGASFNN QTKVPGSDHG QFSCIQLFQK ELTPSDVGKL NRLVIPKKFA VKYFPYISGN GEEEGEEEEE KVVGAPSVLD DIELVFYDRL MKCWKFRYCY WRSSQSFVFT RGWNRFVKEK NLKEKDIITF YACASPDNRV QEGQNFSLID ISYSNGQVVV DGNNQMEEMQ KELELRLGHT IRRRLQKDDR VKEINGLKEL ESKNNNNNNK MKGKGLRLFG VRID // ID B9SX03_RICCO Unreviewed; 373 AA. AC B9SX03; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Transcription factor, putative {ECO:0000313|EMBL:EEF31854.1}; GN ORFNames=RCOM_1258760 {ECO:0000313|EMBL:EEF31854.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974214; EEF31854.1; -; Genomic_DNA. DR InParanoid; B9SX03; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 43123 MW; 7195BC9418E47D0B CRC64; MSINQFSRDL PETLWWSQHQ QRQHQQHQSF MEPNPNTAHK PLIPNPNSSW PSHFYQHHHH HQQNSWLNPY SNSQEPDQMS TAQNPSLTFN LNHEDIEEEQ DPLEEQEKHY RNNQEQHLHQ QQHHQEREEQ NEKEGMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLGGDSV DKGLLLSFED ELGKCWRFRY SYWNSSQSYV LTKGWSRYVK DKQLDAGDVV LFERHRLDGE RLFIGWRRRD NNHTNTSSCS SSSGVMVQGS SGGVWSRVLY SQQQHQPYQL GHGANVTTRV PYQPDCLHAG SGGQNQTIPI GNSKRFRLFG VNLECQLDDS EPSTPDGSSM SSQGPNQQQQ FYSSHSPYNS SSTGSQGHMV SYT // ID B9SXG4_RICCO Unreviewed; 117 AA. AC B9SXG4; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 12-APR-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF31714.1}; GN ORFNames=RCOM_0321860 {ECO:0000313|EMBL:EEF31714.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974224; EEF31714.1; -; Genomic_DNA. DR InParanoid; B9SXG4; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 106 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 117 AA; 13768 MW; FAC55D5F898F7011 CRC64; MMKFKKKLSQ TDVTKRLAFP TRCFKGFLPL LQGKHFVDLE VMYKSQTMKF RCSKRKKGKY LKPVLTKGWL DFVRREKLKA GDMIVLREEK NEAAGAEFKI EIIMKSIRLF GKDICID // ID B9SZC6_RICCO Unreviewed; 233 AA. AC B9SZC6; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 12-APR-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF31029.1}; GN ORFNames=RCOM_1151090 {ECO:0000313|EMBL:EEF31029.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974272; EEF31029.1; -; Genomic_DNA. DR InParanoid; B9SZC6; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 220 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 233 AA; 26452 MW; 3C4205F5037D2BCE CRC64; MGTGGDDDEL REIGEAALGL CSMKFEEIDQ KEASVLEKMK TENLGIGNEG INHNPISREQ RRIPHSQQFA HQDKGNLENE QESSQNLPEN QEVTHSEEDI PNLVYNYKPP DIASFPGLNG LIGECSKPFE KQLIANDIEE NPSRLTMSNA DVAGCLVPLL DLDKHEDPKK GIEVTVYDRE GNEFIMVFKT WSPRTCVLTR GWNTFLQKHK LLKHQDFVTI WIFRKLDDGD FAL // ID B9T230_RICCO Unreviewed; 219 AA. AC B9T230; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF30083.1}; GN ORFNames=RCOM_0996790 {ECO:0000313|EMBL:EEF30083.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974368; EEF30083.1; -; Genomic_DNA. DR InParanoid; B9T230; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 219 AA; 24888 MW; 5F767419D99C63A6 CRC64; MHRFFKIILG DTLRDDFHDP IQETENAASV KTSSHSLPCL KSKETPPLPF PQPHKSMKLE NPTPNINPQS VAGKVEENEN MDSQKQRLNG TVSRKRSQFK EAKATAIQRA SIKYESKNPF FMSTIQASHI HRDYRMHVPV KFMVKCTKQS RENVMLIVGN RQWPVKMISS TSDGRSKFSA GWLAFARGNS LQVGDICIFE LIDGETVLIK VSIFRHVTC // ID B9T231_RICCO Unreviewed; 194 AA. AC B9T231; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF30084.1}; GN ORFNames=RCOM_0996800 {ECO:0000313|EMBL:EEF30084.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974368; EEF30084.1; -; Genomic_DNA. DR InParanoid; B9T231; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 190 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 190 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 22573 MW; D47B4B6557117A05 CRC64; MASCSKQDNE RLMFKTNRPH FFKVVLPQTI RERKLEGLIV KRIMAKEASL VKNKGNNKKL TQGKRVRREH VEKPSYSALS GEVEAAEKFT SLHPFFKLVL TSSCVKGGGL NVPKNFIMDM KPRTYETNFQ VKNRWWPVRL NIYLRHSRGK FSAGWILFAR ENSLQAGDVC IFELIDRETM LIKVSIFRRV KQLV // ID B9T232_RICCO Unreviewed; 180 AA. AC B9T232; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 41. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF30085.1}; GN ORFNames=RCOM_0997110 {ECO:0000313|EMBL:EEF30085.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974368; EEF30085.1; -; Genomic_DNA. DR InParanoid; B9T232; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 180 AA; 20808 MW; D736612C52D0227A CRC64; MASCSKQDNG RLMFKTNRPH FFKGITEKFA NRYGNGKHSI HIPQSFATKY LRSHGNATLN VLDGRTWSVE YKIRRTHGTT RTRLFHGWKK FAQDNHLEIG DVCIFELINR TKTAFKHVPV KSMVKCTKRS RENVMLIVGN RQWPVKMISY TSDGRSKFSA GWLGFARGIL YKLDIFAFSS // ID B9T237_RICCO Unreviewed; 116 AA. AC B9T237; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 41. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF30090.1}; GN ORFNames=RCOM_0997760 {ECO:0000313|EMBL:EEF30090.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974368; EEF30090.1; -; Genomic_DNA. DR InParanoid; B9T237; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 116 AA; 13000 MW; 9CE543810E016CA1 CRC64; MQRHSCSKVP EAVVAANKVA SLNPFFKVNI RSSHVEHGSL TVPVEFFRSY AKKSIENVTL QVARRQWTVK LLIYRSPHQG CFSAGWSSFA KENSIQVGDA CIFELVNSET MLLKVS // ID B9T287_RICCO Unreviewed; 325 AA. AC B9T287; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=DNA-binding protein RAV1, putative {ECO:0000313|EMBL:EEF30029.1}; GN ORFNames=RCOM_0191490 {ECO:0000313|EMBL:EEF30029.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974372; EEF30029.1; -; Genomic_DNA. DR RefSeq; XP_002532356.1; XM_002532310.1. DR GeneID; 8277465; -. DR KEGG; rcu:8277465; -. DR KO; K09287; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:EEF30029.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 84 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 142 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 84 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 142 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 37999 MW; 754BB797AB95799D CRC64; MASPNSKMIV SLNQQNESYS SCVRGSSSKF RGVILLRSGK WGARIAYKYK AYWLGTYDIE EEAAIAYDRA AIKLQRSDAP LNFPMPIYTV QETKFQGQYS NEEILDMIKD KTYLSKYANY LANQSLVREF AYEQGITYRM LFRKELTQTD VTHIKGFHIP KDHAIEYFPP LVGANSGIGH ENGNNNKSID LIFYDKHCRP WTFRYSYWKS TQTYVFTKGW RHFLKMNDLR TKDSVFFYKC EYQGKTGGRV FYMIDVLRTS IQSYAVGRNL EKEIGQMKRV ENEEDVDEVM EEEETSNGVK LFGVHISNGK PDHKRKRAHE YQHQL // ID B9T414_RICCO Unreviewed; 478 AA. AC B9T414; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 50. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0485460 {ECO:0000313|EMBL:EEF29407.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974446; EEF29407.1; -; Genomic_DNA. DR InParanoid; B9T414; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 478 AA; 53362 MW; A60AE86F287568BB CRC64; MRLSSAGFNP QTQEGENRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPAELGTPN KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGIKDD DLGMNSPLMW LRGDADRGIQ SMNFQGLGVT PWMQPRVDAS MLGLQTDMYQ AMAAAALQEM RAIDPSKSPT TSLCNSSNMQ ISQAGLLL // ID B9T454_RICCO Unreviewed; 126 AA. AC B9T454; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 12-APR-2017, entry version 33. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF29354.1}; GN ORFNames=RCOM_0290450 {ECO:0000313|EMBL:EEF29354.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974455; EEF29354.1; -; Genomic_DNA. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 110 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 126 AA; 15120 MW; C578C9B46D06A9D5 CRC64; MGDRNMQLIF RKILKQSHIT HQLNIPEQVL QRYPIYNLEY SRNFTCYDKD GNLFPFRISI RRSPVYFKPY FARAVWGPFV EAKSLRVGDV VEFYTMIDNS EAGIQVRAWR QEPGTNNWRH VEEFMP // ID B9T462_RICCO Unreviewed; 125 AA. AC B9T462; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 12-APR-2017, entry version 37. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EEF29362.1}; GN ORFNames=RCOM_0291130 {ECO:0000313|EMBL:EEF29362.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974455; EEF29362.1; -; Genomic_DNA. DR InParanoid; B9T462; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 105 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 125 AA; 14326 MW; 6F4E5A8B6CCE1A8C CRC64; MAMFSKVLQC PDIERGLSVP EACIKAFQPT DKGTEMNLQV RDESGIVRTF RCRIPIGLNP KPVVFGDWLQ FVRSKDLKQG DAITFYKEKD HATGADYRIT VKKRESYYSR FKTSIHPRDI TAQPV // ID B9T523_RICCO Unreviewed; 212 AA. AC B9T523; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 10-MAY-2017, entry version 44. DE SubName: Full=DNA binding protein, putative {ECO:0000313|EMBL:EEF29041.1}; GN ORFNames=RCOM_1113980 {ECO:0000313|EMBL:EEF29041.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974505; EEF29041.1; -; Genomic_DNA. DR InParanoid; B9T523; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 24098 MW; BEA60513FD1286C6 CRC64; MVADNGNSNT YEEARKLRLK ENKKRFEDLG ISKISKSLSN LTTPEKKTKM DIDLPPLRKS SSWTVAIILW IFFSYVARPL DEVKLASYED RTRALKAAEE FQNSLQSGNP SFVKSMVRSH VYSCFWLGLP TQFCKNHLPK KDLDMILEDD NGSTYDAKYL GNRTGLSGGW RGFALDHKLD DGDAVVFELV EPDKFKHIAS SFKPFDMASS EK // ID B9T725_RICCO Unreviewed; 590 AA. AC B9T725; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=RCOM_0022630 {ECO:0000313|EMBL:EEF28340.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974684; EEF28340.1; -; Genomic_DNA. DR InParanoid; B9T725; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 504 584 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 590 AA; 65624 MW; 19B76EE18FFE4F72 CRC64; MMRDFGVIKP QREQLRVTEK CLDSQLWHAC AGGMVQMPPL NSRVFYFPQG HAEHAQGNVD FGRCQISAMI PCKVSAIKYL ADPETDEVYA KIRLIPLIDR DVFLENSGDD CDDGLYNGAE SQEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTILA KDVHGETWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD SIVFLRADNG DLCVGIRRAK RGIGGGNECP SGWNSFGGYA AGFLREDESK LMRRNGNGDN KSKVRVESVI QAATLAANGQ PFEIVYYPRA STPEFCVRAS AVRAAMQIQW CPGMRFKMPF ETEDSSRISW FMGTISSVQV ADPIRWPNSP WRLLQVAWDE PDLLQNVKRV SPWLVELVAN MPAVHLSPFS PPRKKLRIPQ TPDFSLIGQL QMPSFTSNTL NLNSPLCCVS DNITARIQGA RHAQFGLSSA DLHINKLQSG SVSASHQTTT LENSSDEGSP SYKEHWKTDL GLETGHCKVF MESEDVGRTL DLSVLGSYEE LYGKLANMFE IENSDMLSSV LYRDAAGAIK RTGDEPFSEF LKTARRLTIL TDSGSENIAR // ID B9T858_RICCO Unreviewed; 349 AA. AC B9T858; DT 24-MAR-2009, integrated into UniProtKB/TrEMBL. DT 24-MAR-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=DNA-binding protein RAV1, putative {ECO:0000313|EMBL:EEF27956.1}; GN ORFNames=RCOM_0143290 {ECO:0000313|EMBL:EEF27956.1}; OS Ricinus communis (Castor bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; OC Acalyphoideae; Acalypheae; Ricinus. OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311}; RN [1] {ECO:0000313|Proteomes:UP000008311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311}; RX PubMed=20729833; DOI=10.1038/nbt.1674; RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., RA Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., RA Ravel J., Rabinowicz P.D.; RT "Draft genome sequence of the oilseed species Ricinus communis."; RL Nat. Biotechnol. 28:951-956(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EQ974930; EEF27956.1; -; Genomic_DNA. DR RefSeq; XP_002534427.1; XM_002534381.2. DR RefSeq; XP_015583973.1; XM_015728487.1. DR GeneID; 8261026; -. DR KEGG; rcu:8261026; -. DR InParanoid; B9T858; -. DR KO; K09287; -. DR Proteomes; UP000008311; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008311}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:EEF27956.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008311}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 102 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 169 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 102 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 169 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 39698 MW; E4AA2FDAB2F333DB CRC64; MTGEEIVSMI SNGETAVTEE VSDSNSSTYP ALASKRVMHG SNICTSRFRG VVPHQNGHWG CQIYANHQRI WLGTFKSEKE AAMAYDSAAL KLRSGDCRRN FPITNISVEE PKFQSYYSTE AVLKMIKDGT YQSKLAYFSS TSSQSVETEL SIKLTKTQRN RSLMCKELFQ KELTPSDVGK LNRLVIPKRF AIKFFSHISE SVEQNIGGNK ANDGQLAFYD KAMKLWKFRY CYWKSSQSYV FTRGWNRFVK EKQLKANDTI AICLCECREN AELTDSYYMI DVKNEGDSSS LLESGSQSET TKMQVHLHLG QTTACHYNKN KVEGEGLKEA RPRHDGDRKS FRLFGTEII // ID C0HDR1_MAIZE Unreviewed; 681 AA. AC C0HDR1; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 66. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF2 {ECO:0000313|EMBL:ADG43136.1}; GN Synonyms=100304210 {ECO:0000313|EnsemblPlants:Zm00001d032683_P001}; GN ORFNames=ZEAMMB73_Zm00001d032683 {ECO:0000313|EMBL:ONM05726.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN25164.1}; RN [1] {ECO:0000313|EMBL:ACN25164.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN25164.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ADG43136.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:ONM05726.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM05726.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d032683_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d032683_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT060467; ACN25164.1; -; mRNA. DR EMBL; HM004517; ADG43136.1; -; Genomic_DNA. DR EMBL; CM007647; ONM05726.1; -; Genomic_DNA. DR RefSeq; NP_001159132.1; NM_001165660.1. DR UniGene; Zm.26345; -. DR STRING; 4577.GRMZM2G153233_P01; -. DR EnsemblPlants; Zm00001d032683_T001; Zm00001d032683_P001; Zm00001d032683. DR GeneID; 100304210; -. DR Gramene; Zm00001d032683_T001; Zm00001d032683_P001; Zm00001d032683. DR KEGG; zma:100304210; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007305; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 589 667 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 74543 MW; E5FC1AFB0D26EF6D CRC64; MKEVAEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGAAD LAGARALPSL VLCSVTGVRF LADPETDEVF AKIRLVPVAP GEVEFREPDE FSVDPADARE KLSSFAKTLT QSDANNGGGF SVPRYCAETI FPKLDYRADP PVQTVLAKDV HGEVWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRTEHGELC VGIRRVKRVS CGGMECMSGW NAPGYGALSA FLKDEEGKMM KSHGGYMRGR GKVKITDVVN AASLAASGQP FEVVYYPRAS TPEFVVKAAS VQNAMRNQWC PGMRFKMAFE TEDSSRISWF MGTIASAQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKCVN PWLVEIVSSI PPIHLGPFSP PRKKLRVPHH PDFPFDGQLL NPIFHGNPLG PSNGGGALRC FSDIAPAGIQ GARHAQFGLP LTDRQLNKLH LGLFQGGGFK RRLDAITPPC PISRGFVIGS APVDESVSCV LTIGTPRAAE RSDDRKKPHL MLFGKPILTE QQMSSRGSRE TLSPEATGNS SDGSVQKTGN VSDGSGSSIC IGSSSRGREA SRLGFEFEAG HCKVFVESED VGRTIDLSVF GSYEELYGQL ADMFGIEKAE VMSHLCYRDA AGAVKRTGDE PFCDFMKVAR RLTIVESTEG RLQKPLVEYM A // ID C0HF88_MAIZE Unreviewed; 690 AA. AC C0HF88; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 45. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACN25691.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN25691.1}; RN [1] {ECO:0000313|EMBL:ACN25691.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN25691.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT060994; ACN25691.1; -; mRNA. DR RefSeq; XP_008673439.1; XM_008675217.1. DR UniGene; Zm.24; -. DR GeneID; 542523; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR HOGENOM; HOG000238595; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 517 618 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 517 618 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 690 AA; 73120 MW; F409141C2404B773 CRC64; MEASAGSSPP HSQENPPEHG GDMGGAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS STFSSNSSSN SSSAYTNTAG RAGGEPSEPA SAGEGFDALD DIDQLLDFAS LSMPWDSEPF PGVSMMLENA MSAPPQPVGD GMSEEKAVPE GTTGGEEACM DASEGEELPR FFMEWLTSNR ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLQR KRPRDVMEEE AGLHVQLPSP VANPPGYEFP AGGQDMAAGG GTSWMPHQQA FTPPAAYGGD AVYPSAAGQQ YSFHQGPSTS SVVVNSQPFS PPPVGDMHGA NMAWPQQYVP FPPPGASTGS YPMPQPFSPG FGGQYAGAGA GHLSVAPQRM AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSLGQIQA SVHLQEPSPR STHSGPVTPS AGGWGFWSPS SQQQVQNPLS KSNSSRAPPP SLEAAAVAPQ TKPAPAGARQ DDIHHRLAAA SDKRQGAKAD KNLRFLLQKV LKQSDVGSLG RIVLPKEAEV HLPELKTRDG ISIPMEDIGT SRVWNMRYRF WPNNKSRMYL LENTGEFVRS NELQEGDFIV IYSDVKSGKY LIRGVKVRPP PAQEQGSGSS GGGKHRPLCP AGPGRAAAAG APEDAVVDGV SGACKGRSPE GVRRVRQQGA GAMSQMAVSI // ID C0P3Q8_MAIZE Unreviewed; 963 AA. AC C0P3Q8; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE SubName: Full=B3 domain-containing transcription repressor VAL2 {ECO:0000313|EMBL:ONM60625.1}; GN Name=100382023 {ECO:0000313|EnsemblPlants:Zm00001d022440_P002}; GN ORFNames=ZEAMMB73_Zm00001d022440 {ECO:0000313|EMBL:ONM60625.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN27624.1}; RN [1] {ECO:0000313|EMBL:ACN27624.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN27624.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ONM60625.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM60625.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d022440_P002} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d022440_P002}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT062927; ACN27624.1; -; mRNA. DR EMBL; CM007650; ONM60625.1; -; Genomic_DNA. DR EMBL; CM007650; ONM60627.1; -; Genomic_DNA. DR EMBL; CM007650; ONM60628.1; -; Genomic_DNA. DR RefSeq; NP_001168259.1; NM_001174788.1. DR RefSeq; XP_008651637.1; XM_008653415.1. DR UniGene; Zm.14102; -. DR STRING; 4577.GRMZM2G158162_P01; -. DR EnsemblPlants; Zm00001d022440_T002; Zm00001d022440_P002; Zm00001d022440. DR EnsemblPlants; Zm00001d022440_T003; Zm00001d022440_P003; Zm00001d022440. DR EnsemblPlants; Zm00001d022440_T005; Zm00001d022440_P005; Zm00001d022440. DR GeneID; 100382023; -. DR Gramene; Zm00001d022440_T002; Zm00001d022440_P002; Zm00001d022440. DR Gramene; Zm00001d022440_T003; Zm00001d022440_P003; Zm00001d022440. DR Gramene; Zm00001d022440_T005; Zm00001d022440_P005; Zm00001d022440. DR KEGG; zma:100382023; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000007305; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 370 471 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 631 681 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 370 471 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 963 AA; 105141 MW; 99CC1259D32219BD CRC64; MAMAGAGAAA AAAKRCMNPA CGALPASSVV VGAGGDWRKG WPLRSGGFAL LCDKCGLAYE QFVFCDIFHQ KESGWRDCSF CGKRLHCGCV ASKNSYDLLD SGGIQCVTCM KNSAAQSASG QVVPKLFPCP NNLLFFGKSD ELLSSRKFEQ PPSLMLDSRN DDIAIVNKSS HLFMVSGIEA GQSSNILRQK EIENGPRQIK WEQPTLNIGD MGRPLLTRSQ SALESPQCTR RDDNKDPTTD STTSESFPEA CLSMNLGIAN NGNRMEATST AERPMLSPTT AIAEGRELTT ALSPFQHAQR ARHFLTRPPR VGEGAAFDPT RDMFPHLRVA RPPAEGRGRN QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGRPLTIQ DARGKEWHFQ FRFWPNNNSR MYVLEGVTPC IQSLQLQAGD TVTFSRIDPG GKLVMGFRKA TNTVSLPDSQ ISAIANGSLL SETLFSTANE SIGVVSGYPG FLHSIKGAAD FHPSSLYDHH INSADGDVSW NKADKFGSRP DEGSLQFLQK RSRNIGSKSR RFLIDAEDAM ELKLTWEEAQ ELLRPAPTAK PTVVMIEDYE FEEYDEPPVF AKRSIFTIRA TGEQDQWIQC DECSKWRRLP LNVIVASKWT CTDNSWDPKC CSCSAPEELT PKELQSVMQQ YEEMRRRKGS YGLKLNVAEM DASSFDALAT GAVFGEVGNQ GTASVATTTR HPRHRPGCTC IVCIQPPSGK GPKHNPACTC NVCMTVRRRF KTLMMRKKQR QSEREEAEAS KKIAWVNRDE PEGSSLSRSP QTLDTTRDSS DVTMFDKVAA DVNKGHIDLN FHPAAPAVRG AGDQGQNGAQ QPRAVSMMGL LEVASRPLDN YMKQNGLTSL AGEQGGGSSS TATVPPAPVE SEDRTSDEGR VASAEREADA MAIDEAGENQ QDKPADSAAA AAT // ID C0P7I4_MAIZE Unreviewed; 446 AA. AC C0P7I4; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100382422 {ECO:0000313|EnsemblPlants:Zm00001d030801_P001}; GN Synonyms=ARF33 {ECO:0000313|EMBL:AIB04441.1}; GN ORFNames=ZEAMMB73_Zm00001d030801 {ECO:0000313|EMBL:ONM01563.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN28950.1}; RN [1] {ECO:0000313|EMBL:ACN28950.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN28950.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:AIB04441.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:ONM01563.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM01563.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d030801_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d030801_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT064253; ACN28950.1; -; mRNA. DR EMBL; KJ726950; AIB04441.1; -; mRNA. DR EMBL; CM007647; ONM01563.1; -; Genomic_DNA. DR RefSeq; NP_001168636.1; NM_001175165.1. DR UniGene; Zm.127388; -. DR EnsemblPlants; Zm00001d030801_T001; Zm00001d030801_P001; Zm00001d030801. DR GeneID; 100382422; -. DR Gramene; Zm00001d030801_T001; Zm00001d030801_P001; Zm00001d030801. DR KEGG; zma:100382422; -. DR HOGENOM; HOG000241141; -. DR OMA; YNIHAPS; -. DR OrthoDB; \N; -. DR Proteomes; UP000007305; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 446 446 {ECO:0000313|EMBL:AIB04441.1}. SQ SEQUENCE 446 AA; 48729 MW; 528476CA178140CB CRC64; MATQQPLPPA DGVGDNTVDR DVWLACAAPF SRIPTVGDEV YYFPDGHIEQ HQHLSAAPLP AQDRFHCTVT DVSLGVDDKT DEVFAKISLR PRPGRAAAPP PGPGGSSNSP APAPGPPQKL RYFTKDLSQT DVYAKFRIPL ENEHVLPIPK VETDGADQQR VQRQDVVMRD TRGKSWRFSE TYRVNPSKEH SLGTGWLDFA KAKRLAAGDK IVFMRRPNGD LIVGVRRLHV PRYRPFDFQG PAQDVMEAVR LAAAGRPFTV TYFPRQAAVE FIVPRSEVDD ALATSWEPGA VVRMEVMEDE NRQHTVWVHG RVNAIRQNIW RMLEIIWGVD PPLATTRSVN AWQVASLPPL ATTGRSVIRS ESESQAQSPS SSTRASRHTD SGPSATPFSA TPPRTISIPS ASPPNNPVSL SPLQNVKTIK LFGETISVDG GGGGGSEQVN RAPPSS // ID C0P906_MAIZE Unreviewed; 171 AA. AC C0P906; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 10-MAY-2017, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACN30651.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN30651.1}; RN [1] {ECO:0000313|EMBL:ACN30651.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN30651.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT064775; ACN30651.1; -; mRNA. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 171 AA; 19820 MW; 212F6ED2C0BA2DF4 CRC64; MEPVRRSGRL ANLPDKPVYR EKVPDFGMKI RRTYGSVRRD LTNRVYATDD ARSYAISKAE DLEQELDSSF PIFIKPMTQS HVTGGFWLGL PIHFCRKYLP KRDEMITLVD EDDDESDTLY LAMKRGLSAG WRGFAVQQKL VDGDCLVFQL IEQTKFKVYI TRASSYYESE D // ID C0PAG5_MAIZE Unreviewed; 677 AA. AC C0PAG5; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 59. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZEAMMB73_Zm00001d016838 {ECO:0000313|EMBL:AQK71786.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN31160.1}; RN [1] {ECO:0000313|EMBL:ACN31160.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN31160.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK71786.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK71786.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d016838_P002} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d016838_P002}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT065284; ACN31160.1; -; mRNA. DR EMBL; CM000781; AQK71786.1; -; Genomic_DNA. DR EMBL; CM000781; AQK71788.1; -; Genomic_DNA. DR STRING; 4577.GRMZM2G702026_P01; -. DR EnsemblPlants; Zm00001d016838_T002; Zm00001d016838_P002; Zm00001d016838. DR EnsemblPlants; Zm00001d016838_T003; Zm00001d016838_P003; Zm00001d016838. DR Gramene; Zm00001d016838_T002; Zm00001d016838_P002; Zm00001d016838. DR Gramene; Zm00001d016838_T003; Zm00001d016838_P003; Zm00001d016838. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007305; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 545 627 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 677 AA; 75129 MW; 704F7947BF2713BC CRC64; MAEAGVARGS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPHK ILCKVVNVEL RAETDSDEVY AQIMLQPQTE QSEPTSPDPE PPEPERCNIH SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELVAKDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKMSVGM RFKMRFEGDE SPERRFSGTI IGMGCMPANS TSPWANSEWR SLKVQWDEPS AILRPDRVSP WEVEPLDRTN PQPPQPPLRN KRARPPASPS IAPELAPVFG FWKSPAEPAQ AFSFSGLQRT QELYHSSPSS MFSSSLNVGF NPKYEGPTPN TNHLYWTMRE TRTESYSASI NKAPTEKKQE STTSGCRLFG IEIGSSAVSP VVTVASVGHD PPPPALSVDA ESDQLSQPSH ANKATDAPAA SSDRSPNETE SRQARSCTKV IMQGVAVGRA VDLTRLDGYD DLRRKLEEMF DIPGELSASL KKWKVIYTDD EDDMMLVGDD PWSEFCRMVK RIYIYSYEEA KSLTPKAKLP AIGGDTGVKP DPSKLPPESD VPQSDSDNSA PVAADKD // ID C0PBD3_MAIZE Unreviewed; 232 AA. AC C0PBD3; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 07-JUN-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACN31478.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN31478.1}; RN [1] {ECO:0000313|EMBL:ACN31478.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN31478.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT065602; ACN31478.1; -; mRNA. DR UniGene; Zm.12305; -. DR STRING; 4577.GRMZM2G173321_P02; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; EANDLEW; -. DR OrthoDB; EOG09360M6G; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 232 AA; 26769 MW; 4662C138A32920A7 CRC64; MAEATAYEEQ RRRQVEANKR KLEELQLHYL SAAVREAAAA AKPSPVKKRK ARVPLDAADS VMEPLRRSGR LANLPDKSVH REEVPTFWRK IRRTYGSVRK DLENRVYATD EARSYAICKA EEVEQELDSS FPVFIKPMTQ SHVTGGFWLG LPNHFCRKYL PKRDETITLL DEDDNESYTL YLALKRGLSA GWRGFAIQHK LVDGDCLVFQ LTERTKFKVI IIRASSYYES ED // ID C0PE25_MAIZE Unreviewed; 813 AA. AC C0PE25; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 65. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100383196 {ECO:0000313|EnsemblPlants:Zm00001d023659_P004}; GN Synonyms=ARF28 {ECO:0000313|EMBL:AIB04297.1}; GN ORFNames=ZEAMMB73_Zm00001d023659 {ECO:0000313|EMBL:AQK39756.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN33441.1}; RN [1] {ECO:0000313|EMBL:ACN33441.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN33441.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AIB04297.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:AQK39756.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK39756.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EnsemblPlants:Zm00001d023659_P004} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d023659_P004}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT066544; ACN33441.1; -; mRNA. DR EMBL; KJ726806; AIB04297.1; -; mRNA. DR EMBL; CM000786; AQK39756.1; -; Genomic_DNA. DR RefSeq; NP_001169329.1; NM_001175858.1. DR UniGene; Zm.23421; -. DR EnsemblPlants; Zm00001d023659_T004; Zm00001d023659_P004; Zm00001d023659. DR GeneID; 100383196; -. DR Gramene; Zm00001d023659_T004; Zm00001d023659_P004; Zm00001d023659. DR KEGG; zma:100383196; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 679 763 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 813 813 {ECO:0000313|EMBL:AIB04297.1}. SQ SEQUENCE 813 AA; 89705 MW; D604D0246BD71FB3 CRC64; MVAAAAAAGG GADAGCGGGG GGGGKDALFV ELWKACAGPL SSVPLLGEKV YYFPQGHIEQ VEASTNHLAE HQGTPLYNLP WKIPCKLMNM ELKAEPDTDE VYAQLTLLPD KKQDENTSAR VENEEAEEEV VPHVPPATSE GLRIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTVYYKPR TSPAEFVVSR ARYCESLKRN YSIGMRFRMR FEGEEAAEQR FTGTIVGICV SDPSGWADSK WRSLKVRWDE ASSVPRPERV SPWQIEPAVS PSPVNPLPVR FKRSRSSVNA SPSDVSTVNR EVASKVMVES QQNNLPRALH NQGRTQLTGR YRDSTDVKTA QDLTMWSSGT EQQRNNIAAQ TKRCLEGWTQ SRTPEGYNQL FSAFQPLKDA HNPLRPFPNK ISGTRSSTWV TADARYPAQQ ANHNMLHGTL SFMPHSSGFR MIQQNNLVTP EAANFTGKSA FTSLQGHVTD QCSTGWFGSI ESNSHTDHAS SSLIRSQPLV IGNDVQKTKG TSFKLFGIPL GSPEKSEPLV SPPSVAYDGK LQTSPTDNNE PCSEATQNIQ NKVQSSSTRS CKKVHKQGSA LGRSIDLTKF ACYDELIAEL DQMFDFDGEL KSPCRNWLVV YTDNEGDMML VGDDPWNEFC DMVHKIFIYT REEVERMNPG ALNARLEDCL SDSLGRGLAS KEPRSGPSTS AVDSENRANL SSQ // ID C0PGA8_MAIZE Unreviewed; 513 AA. AC C0PGA8; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 59. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100383479 {ECO:0000313|EnsemblPlants:Zm00001d002929_P001}; GN Synonyms=ARF5 {ECO:0000313|EMBL:ADG43139.1}; GN ORFNames=ZEAMMB73_Zm00001d002929 {ECO:0000313|EMBL:ONM15644.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN34224.1}; RN [1] {ECO:0000313|EMBL:ACN34224.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN34224.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ADG43139.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:ONM15644.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM15644.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d002929_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d002929_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT067327; ACN34224.1; -; mRNA. DR EMBL; HM004520; ADG43139.1; -; Genomic_DNA. DR EMBL; CM007648; ONM15644.1; -; Genomic_DNA. DR RefSeq; NP_001169598.1; NM_001176127.1. DR RefSeq; XP_008668437.1; XM_008670215.1. DR UniGene; Zm.127133; -. DR STRING; 4577.GRMZM5G808366_P01; -. DR EnsemblPlants; Zm00001d002929_T001; Zm00001d002929_P001; Zm00001d002929. DR GeneID; 100383479; -. DR Gramene; Zm00001d002929_T001; Zm00001d002929_P001; Zm00001d002929. DR KEGG; zma:100383479; -. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; NGARICN; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000007305; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 513 AA; 55450 MW; EE05C9170E4526EE CRC64; MGPQPPLHLP AANGDSIVDR DVWLACAVPL SRLPAVGAEV YYFPHGHAEQ CPAHLPAPLP APHLFPCTVA GVSLGADDET NEVFAKISLS PGPHRGPAAA CRTDPTSDCP PQELSYFTKE LTQSDANNGG GFSVPRYCAD HIFPTLDFDA NPPVQKLFMR DTRGNPWQFR HIYRGTPRRH LLTTGWSRFV NAKLLVAGDI VVFMRRHNGD LIVGLRRTPR YPLVFPRVGS GAGVDPDQPP PRNARARVPP QDVIEAARLA AEGRSFAVTY FPRQAAGEFI VPRDEVEGVL ATRWEPGAQV RMQVMEAEDT RRTVWADGHV KSLHQNIWRA LEIDWDDSSP LSPNLSRFVN AWQVELVTHP PLPNGARICN PIASLCHGDV SYPLIGSEIQ GPPIPASMQG ARHTGPCAAP SESSAVLTNR VLFPLLNPDL QMPPFTSPSD SSEILDPESA SPPNKSVRLP PAELPVQVKS IQLFGATIMV HVVRSVACGG CCEELNGAPS GDATADGSVG KDV // ID C0PGK8_MAIZE Unreviewed; 680 AA. AC C0PGK8; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 60. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ZEAMMB73_Zm00001d038698 {ECO:0000313|EMBL:AQK87589.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN34324.1}; RN [1] {ECO:0000313|EMBL:ACN34324.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN34324.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK87589.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK87589.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d038698_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d038698_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT067427; ACN34324.1; -; mRNA. DR EMBL; CM000782; AQK87589.1; -; Genomic_DNA. DR STRING; 4577.GRMZM2G441325_P01; -. DR EnsemblPlants; Zm00001d038698_T001; Zm00001d038698_P001; Zm00001d038698. DR Gramene; Zm00001d038698_T001; Zm00001d038698_P001; Zm00001d038698. DR eggNOG; ENOG410JSIU; Eukaryota. DR eggNOG; ENOG41108RS; LUCA. DR OMA; HICFNPR; -. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000007305; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 680 AA; 73941 MW; 42560F136E5B1EBA CRC64; MGIDLNAVGE DDPAGAVCAE LWHACAGAGV ALPRRGSAVV YLPQAHLAAG GCDGGGVSAP APPRVPPHVV CRVVDVELRA DAATDEVYAR LALVAMDTMF GRNINDGETE EKNGEEEDGD GEKKHASHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YEQLRPSQEL IAKDLHGMKW RFRHIYRGQP RRHLLTTGWS SFINKKKLVS GDAVLFLRGN DGELRLGVRR AVQLKNEALL EAVNCTDSKL LMLSAVANSL DNRSIFHICF NPRVGASEFI VPYCKFLKSL NYHFSVGTRF KVGCENEDAN ERSFGLIIGI SEVDPIHWPG SKWKSLLIKW DGATKYSHQN RVSPWDIEGV GSSVSVTHRL SSSVSKRTKL CFPPSDLDTP ILDGNGRPDS VETERFHRVL QGQELVHSSI HGTACSHSSD SPRCQGSYGR RFSADAWNCK MNDVMSGPRH LNATGFAYQP LGFSESVKFS EVLQGQEMSQ AVPSFMRSAF NSGTQNGRVR PFDYVQRSDA TQGYALQQFN LPATEVHSPS SVLMFNQTMV PHAELDGATN REEVHGSRYL SSNAIGREAE PWPSMQQQRA SVNGSEPLDT TEASAPARNA ESGSVGRGAG RSNCKLFGFS LTEKILGTDG GGVKEGNYEV DRQTPRVLDL FGHGSTPGAL HALCAAPLGI // ID C0PH36_MAIZE Unreviewed; 806 AA. AC C0PH36; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF25 {ECO:0000313|EMBL:AIB04306.1}; GN ORFNames=ZEAMMB73_Zm00001d011953 {ECO:0000313|EMBL:AQK98377.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN34502.1}; RN [1] {ECO:0000313|EMBL:ACN34502.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN34502.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AIB04306.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:AQK98377.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK98377.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EnsemblPlants:Zm00001d011953_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d011953_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT067605; ACN34502.1; -; mRNA. DR EMBL; KJ726815; AIB04306.1; -; mRNA. DR EMBL; CM000784; AQK98377.1; -; Genomic_DNA. DR EMBL; CM000784; AQK98379.1; -; Genomic_DNA. DR EMBL; CM000784; AQK98382.1; -; Genomic_DNA. DR EMBL; CM000784; AQK98384.1; -; Genomic_DNA. DR RefSeq; XP_008656904.1; XM_008658682.1. DR EnsemblPlants; Zm00001d011953_T001; Zm00001d011953_P001; Zm00001d011953. DR EnsemblPlants; Zm00001d011953_T002; Zm00001d011953_P002; Zm00001d011953. DR EnsemblPlants; Zm00001d011953_T008; Zm00001d011953_P008; Zm00001d011953. DR EnsemblPlants; Zm00001d011953_T009; Zm00001d011953_P009; Zm00001d011953. DR GeneID; 100273501; -. DR Gramene; Zm00001d011953_T001; Zm00001d011953_P001; Zm00001d011953. DR Gramene; Zm00001d011953_T002; Zm00001d011953_P002; Zm00001d011953. DR Gramene; Zm00001d011953_T008; Zm00001d011953_P008; Zm00001d011953. DR Gramene; Zm00001d011953_T009; Zm00001d011953_P009; Zm00001d011953. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR Proteomes; UP000007305; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 692 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 806 806 {ECO:0000313|EMBL:AIB04306.1}. SQ SEQUENCE 806 AA; 90231 MW; BF30DBBD095F7636 CRC64; MPPAAMALPS QAPSNSGDPL YPELWRACAG PLVTVPRVGD LVFYFPQGHI EQVEASMNQV AGNPMRLYDL PSKLLCRVLN VELKAETDTD EVYAQIMLMP EPEQNDVAAE KTSSGSAAPP RPAVRSFCKT LTASDTSTHG GFSVLRRHAD ECLPALDMSQ SPPTQELVAK DLHGMEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QLSNVPSSVI SSQSMHLGVL ATAWHAINTK SMFTVYYKPR TSPSEFIIPY DQYMESVKNN YSIGMRFRMR FEGEEAPEQR FTGTIVGCEN LDPLWPDSSW RYLKVRWDEP STIPRPDKVS PWKIEPASSP PVNPLPLSRG KRPRQNAPPP SPESSVLTKE GATKIDTDSA QTPHQNSVLQ SQEQMSFRNN LTESTDSDST VQKQMMWSPS PNGKVHTNFQ PRPAMDNWMP LGRRETDFKD TRSAFKDART ASQSFGDTQG FFMQAYDDSR HRLSFNNQFQ DQGSAHRFAD PYFYMPQQPS LTVESGTRTQ TANNDLRFWS ERNSMYGNPS DQQQGFSFGQ NTSSWLNQPL PQVEQSRVVR PHATVAPFDL EKTREGSGFK IFGFQVDTTN PSPVQLSSPL SAIREHVVQT RPSAPVNELQ PVQIECLPEV SVSTAGTAAE NIQQVQQSSK DIQSKSQGAS TRSCTKVHKQ GVALGRSVDL SKFTDYGELK AELDKMFEFE GELVSANRNW QIVYTDNEGD MMLVGDDPWE EFCNIVRKIY IYTKEEVQKM NSKSSVPRKE EPPAAGEGCA AAAANE // ID C0PJB5_MAIZE Unreviewed; 133 AA. AC C0PJB5; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 10-MAY-2017, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACN35281.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN35281.1}; RN [1] {ECO:0000313|EMBL:ACN35281.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN35281.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT068384; ACN35281.1; -; mRNA. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 88 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 88 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 133 AA; 15163 MW; 621D3A96D9239DCB CRC64; MVRSHVSSCF WLGLPISFCK NNLPSKEFRM VLEDEEGLEF DAVYIGNRTG LSGGWRGFAM HHNLEEGDSL VFELAEHDKF KIYIIKAIDD DVKEAEPDDK NDNGVTKEEP DQEESPVAEP PKGAKRRKLR GRR // ID C0PL36_MAIZE Unreviewed; 708 AA. AC C0PL36; DT 05-MAY-2009, integrated into UniProtKB/TrEMBL. DT 05-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 65. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100384045 {ECO:0000313|EnsemblPlants:Zm00001d043922_P001}; GN Synonyms=ARF12 {ECO:0000313|EMBL:ADG43146.1}; GN ORFNames=ZEAMMB73_Zm00001d043922 {ECO:0000313|EMBL:ONM39457.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN35902.1}; RN [1] {ECO:0000313|EMBL:ACN35902.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACN35902.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ADG43146.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:ONM39457.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM39457.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d043922_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d043922_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT069005; ACN35902.1; -; mRNA. DR EMBL; HM004527; ADG43146.1; -; Genomic_DNA. DR EMBL; CM007649; ONM39457.1; -; Genomic_DNA. DR RefSeq; NP_001170123.1; NM_001176652.1. DR UniGene; Zm.12234; -. DR STRING; 4577.GRMZM2G437460_P01; -. DR EnsemblPlants; Zm00001d043922_T001; Zm00001d043922_P001; Zm00001d043922. DR GeneID; 100384045; -. DR Gramene; Zm00001d043922_T001; Zm00001d043922_P001; Zm00001d043922. DR KEGG; zma:100384045; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR KO; K14486; -. DR OMA; IVDYPFC; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000007305; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 77968 MW; F322030E6B5AF9E6 CRC64; MAGIDLNTVE EEDEEEAEAL PLPGPGGRGA VCLELWHACA GPVPPLPRKG SAVVYLPQGH LEHIGGDAAR GAAASAVPPH VLCRVVDVTL HADGATDEVY ARVSLLPEDE DAEKRAQAQA RVREDEDRRD GEDGGAMRPL ARTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSQ QRPSQELVAK DLHGTEWKFR HIYRGQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGEDGV LRLGVRRAAQ LKIVTPIPAP HNQCSSNSNL GNVAQAVATK TVFHIYYNPR LTQSEFIVPY WKFTRSFNQP ISVGMRCRMR YESDDASERR CTGIIIGSRE ADPIWYGSKW KCLVVRWDDG IECRWPNRVS PWEIELTGSV SGSQMCAPSS KRLKPCLPQV NPEIVLPNGS VSSDFAGSAR FHKVLQGQEL LGFKTHDGPA ISASQATEAR NLQYSDERSN NNLGIPRLGV RSPTGIPGFP YHCSGFGESQ RFQKVLQGQE VFHPFRGGCL ADGHIRTAGM YQPDGRHVSG AAYKWSAPQG YDFPQPAKPV FLLQESSPSS VMMFPQTRSK ITHLEYEYSR HEDGRLDRTV PTQDMGRSNQ TLSLWPHLVS GEAIEECTGT VNMHSPVSGA EHESNNESTV ENGCKIFGIS LAEKIRSCDE ADSCSAKCNS RLQPLKSQMP KSLGSCWATV HEQRPVVGRV VDVSATDM // ID C1N0S8_MICPC Unreviewed; 778 AA. AC C1N0S8; DT 26-MAY-2009, integrated into UniProtKB/TrEMBL. DT 26-MAY-2009, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EEH54074.1}; GN ORFNames=MICPUCDRAFT_48248 {ECO:0000313|EMBL:EEH54074.1}; OS Micromonas pusilla (strain CCMP1545) (Picoplanktonic green alga). OC Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; OC Mamiellales; Mamiellaceae; Micromonas. OX NCBI_TaxID=564608 {ECO:0000313|Proteomes:UP000001876}; RN [1] {ECO:0000313|EMBL:EEH54074.1, ECO:0000313|Proteomes:UP000001876} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=CCMP1545 {ECO:0000313|EMBL:EEH54074.1, RC ECO:0000313|Proteomes:UP000001876}; RX PubMed=19359590; DOI=10.1126/science.1167222; RA Worden A.Z., Lee J.H., Mock T., Rouze P., Simmons M.P., Aerts A.L., RA Allen A.E., Cuvelier M.L., Derelle E., Everett M.V., Foulon E., RA Grimwood J., Gundlach H., Henrissat B., Napoli C., McDonald S.M., RA Parker M.S., Rombauts S., Salamov A., Von Dassow P., Badger J.H., RA Coutinho P.M., Demir E., Dubchak I., Gentemann C., Eikrem W., RA Gready J.E., John U., Lanier W., Lindquist E.A., Lucas S., Mayer K.F., RA Moreau H., Not F., Otillar R., Panaud O., Pangilinan J., Paulsen I., RA Piegu B., Poliakov A., Robbens S., Schmutz J., Toulza E., Wyss T., RA Zelensky A., Zhou K., Armbrust E.V., Bhattacharya D., Goodenough U.W., RA Van de Peer Y., Grigoriev I.V.; RT "Green evolution and dynamic adaptations revealed by genomes of the RT marine picoeukaryotes Micromonas."; RL Science 324:268-272(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GG663744; EEH54074.1; -; Genomic_DNA. DR RefSeq; XP_003061444.1; XM_003061398.1. DR GeneID; 9687130; -. DR KEGG; mpp:MICPUCDRAFT_48248; -. DR Proteomes; UP000001876; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001876}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001876}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 147 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 778 AA; 81801 MW; 58B4D655E6358995 CRC64; MASNADITAF EMERNRRVQD NMRRMQELGI FKLAVAAAPP PKPIRAPASA RDRASRRESL GERRQSLRIA SLPTPTYEEV RAEVAKHSEK QRLSSGGRRT HNTSDWSWED DDGSNDSFAN AAAFARDPTA ASSVQRAPQW SPPGPAFVKL MLPSHVSGGY WLQAPYGIGD FLPDTTSTVV LTCDGEEWKT VWLVRSANNG GLSGGWRGFA VDQRLAVGDA CVFTKERGMR LRVTIHRAHL CGGDDAAAEK AFEEAERHAE EMMRAPGGGC RVAGDEKSAP DAVAATTEDI PHGFGTSRAL HVYSRRRLGR YDASAAAAAR KRTGANPNEC LRIAKDAAPS LASLVERAIE ERKAAARERE DARDASPRVP LIPRVAPPPG QDADAKSTGG VVDASEDASP IADGSVGEAA EAANKSPPAP GQLPFASPKT QTRTPRDSTK RGRRGKRPAT PAGKMPAPPG SAQATPTTPP PPSTTTKRAK AAAAAVAPLR QGEVAAPLDA TPACGGGDVD IDDDADADAR ARANAAANAN ATATGRAHPG SRQRRTSASA MHHGWATPAE MRAEYERATG ATAGATTAAL ATARRAMTAA ASAEDATPAD AAAVKRADAD APPPAPRAAR GRPPKATATA AKKKRARAAS KETLPDRADG TPLSQVFRST KRGRTNSCAN ANANANATSS AAAAFVSPAA VKAGTKSPPK RGMKITESNV GAPGSYLGRR VSCFWRAEAR WFEGTLVRWR VGDGYRVAYD DGDVEDGVDF PEDGETVRVL PARARAHA // ID C4J5U3_MAIZE Unreviewed; 283 AA. AC C4J5U3; DT 07-JUL-2009, integrated into UniProtKB/TrEMBL. DT 07-JUL-2009, sequence version 1. DT 05-JUL-2017, entry version 57. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:AQK39327.1}; GN Name=100501773 {ECO:0000313|EnsemblPlants:Zm00001d023446_P001}; GN ORFNames=ZEAMMB73_Zm00001d023446 {ECO:0000313|EMBL:AQK39327.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACR36543.1}; RN [1] {ECO:0000313|EMBL:ACR36543.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACR36543.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK39327.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK39327.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d023446_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d023446_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT086190; ACR36543.1; -; mRNA. DR EMBL; CM000786; AQK39327.1; -; Genomic_DNA. DR RefSeq; NP_001183364.1; NM_001196435.1. DR UniGene; Zm.33542; -. DR STRING; 4577.GRMZM5G805685_P02; -. DR EnsemblPlants; Zm00001d023446_T001; Zm00001d023446_P001; Zm00001d023446. DR GeneID; 100501773; -. DR Gramene; Zm00001d023446_T001; Zm00001d023446_P001; Zm00001d023446. DR KEGG; zma:100501773; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 31024 MW; B590BC316A430766 CRC64; MATHHLAQGH PQAWPWGMAM YTNLHYHHHQ QQQYYEREHL FEKPLTPSDV GKLNRLVIPK QHAERHFPLG GGDGNGNEKG LLLEFDDEAG RPWRFRYSYW VSSQSYVLTK GWSRYVKEKR LDAGDVVRFD RVRGAGVGAA DRLFICCRRR GESAAAASAA ATPTPPPVAP ALNAGEQQQQ QPWSPTVCYS TSGSSYPPSP ASPYAYHIDT PHAGAGEADA KSSGGTPTTG TAPTRKLRLF GVNLDCGPEP ETETPTAPMY GYGYVHQSPY AAVPAVPSYW GSS // ID C4J903_MAIZE Unreviewed; 239 AA. AC C4J903; DT 07-JUL-2009, integrated into UniProtKB/TrEMBL. DT 07-JUL-2009, sequence version 1. DT 05-JUL-2017, entry version 48. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:ONL94339.1}; GN Name=100192994 {ECO:0000313|EnsemblPlants:Zm00001d027939_P001}; GN ORFNames=ZEAMMB73_Zm00001d027939 {ECO:0000313|EMBL:ONL94339.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACR37653.1}; RN [1] {ECO:0000313|EMBL:ACR37653.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACR37653.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|EMBL:ONL94339.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONL94339.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d027939_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d027939_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT087300; ACR37653.1; -; mRNA. DR EMBL; CM007647; ONL94339.1; -; Genomic_DNA. DR RefSeq; XP_008645408.1; XM_008647186.1. DR UniGene; Zm.18375; -. DR EnsemblPlants; Zm00001d027939_T001; Zm00001d027939_P001; Zm00001d027939. DR GeneID; 100192994; -. DR Gramene; Zm00001d027939_T001; Zm00001d027939_P001; Zm00001d027939. DR HOGENOM; HOG000239798; -. DR OMA; HIPEVKY; -. DR Proteomes; UP000007305; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 27083 MW; 355085269D7EE0BD CRC64; MEAAVAETQG MSPYEAARER NLQENKRKME ALNLRHLSAV IKEAPKTPSP MKPKRRRIIE DAVVVPSPPR RSRRLANVPE VKYAEIAPHR ADRMTRSPRR PADLIYLARR GSISMKARLE ATRKAEELES QLDPEIPSFV KAMLHSHVVR GFWLGLPSHF CDTYMPKQDA TITLVDEKDE EFDTNYLAYK KGLSGGWAGF ALYHAIQDGD STVFQLIKPT TFKVHIVRAA TDDSSEVDE // ID C4JAX4_MAIZE Unreviewed; 340 AA. AC C4JAX4; DT 07-JUL-2009, integrated into UniProtKB/TrEMBL. DT 07-JUL-2009, sequence version 1. DT 05-JUL-2017, entry version 56. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACR38324.1}; RN [1] {ECO:0000313|EMBL:ACR38324.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACR38324.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT087971; ACR38324.1; -; mRNA. DR RefSeq; NP_001183794.1; NM_001196865.1. DR UniGene; Zm.80746; -. DR GeneID; 100502387; -. DR KEGG; zma:100502387; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR KO; K14486; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 37385 MW; 490E11A62024737A CRC64; MGIDLNMVDG EGHERRPPPV TCRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGDVA ADLPPHVVCR VADVELCADA ATDEVCARLA LVAEGEAFGR NLGGGGVEGD DGMEDFDAER KSGMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED FNSDSTKRHS LTAVADSLKN RSVFHISYNP RATASEYIIP YAKFLKSLNH PVCIGARINF QCHNEDVSER RSGVVVRISE IDPMKWPGSK WRSLLMGGRC // ID C4JAZ4_MAIZE Unreviewed; 511 AA. AC C4JAZ4; DT 07-JUL-2009, integrated into UniProtKB/TrEMBL. DT 07-JUL-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100502393 {ECO:0000313|EnsemblPlants:Zm00001d050781_P002}; GN ORFNames=ZEAMMB73_Zm00001d050781 {ECO:0000313|EMBL:AQK53046.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACR38344.1}; RN [1] {ECO:0000313|EMBL:ACR38344.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACR38344.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK53046.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK53046.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d050781_P002} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d050781_P002}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT087991; ACR38344.1; -; mRNA. DR EMBL; CM000780; AQK53046.1; -; Genomic_DNA. DR RefSeq; NP_001183800.1; NM_001196871.1. DR UniGene; Zm.57159; -. DR STRING; 4577.GRMZM2G137413_P01; -. DR EnsemblPlants; Zm00001d050781_T002; Zm00001d050781_P002; Zm00001d050781. DR GeneID; 100502393; -. DR Gramene; Zm00001d050781_T002; Zm00001d050781_P002; Zm00001d050781. DR KEGG; zma:100502393; -. DR HOGENOM; HOG000241141; -. DR KO; K14486; -. DR OMA; INSHLYW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007305; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 511 AA; 56731 MW; 26449F2C534AAF64 CRC64; MASAGVAGCS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFDLPPK ILCKVVNVEL RAETDSDEVY AQIMLQPEAD QSEPTSPDSE PPEPERCNVY SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELLAKDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHNM HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKVSVGM RFKMRFEGDE SPERRLSGTI IGLGSMPANS TSPWANSDWR SLRVQWDEPS AILRPDRVSP WELEPLDATN PQPPQPHLRN KRARPPALLS IAPELPQVFG FLKSPAEPAQ AFSFSRPQQT QELYHSNPSS IFSSSLNVGF SSKNDRSTPI NSHLYWTMRQ TRTESYSASI NKAPTEKKQE SATSGCRLFG IEIGSAVSPV ATVASVGQDQ PPALSVDVES D // ID C4JC54_MAIZE Unreviewed; 422 AA. AC C4JC54; DT 07-JUL-2009, integrated into UniProtKB/TrEMBL. DT 07-JUL-2009, sequence version 1. DT 05-JUL-2017, entry version 50. DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:AQK73569.1}; GN Name=100502511 {ECO:0000313|EnsemblPlants:Zm00001d017618_P001}; GN ORFNames=ZEAMMB73_Zm00001d017618 {ECO:0000313|EMBL:AQK73569.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACR38754.1}; RN [1] {ECO:0000313|EMBL:ACR38754.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=B73 {ECO:0000313|EMBL:ACR38754.1}; RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740; RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., RA Fernandes J., Walbot V., Yu Y.; RT "Sequencing, mapping, and analysis of 27,455 maize full-length RT cDNAs."; RL PLoS Genet. 5:E1000740-E1000740(2009). RN [2] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [3] {ECO:0000313|EMBL:AQK73569.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK73569.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d017618_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d017618_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BT088401; ACR38754.1; -; mRNA. DR EMBL; CM000781; AQK73569.1; -; Genomic_DNA. DR RefSeq; NP_001183918.1; NM_001196989.1. DR UniGene; Zm.33144; -. DR STRING; 4577.GRMZM2G024948_P01; -. DR EnsemblPlants; Zm00001d017618_T001; Zm00001d017618_P001; Zm00001d017618. DR GeneID; 100502511; -. DR Gramene; Zm00001d017618_T001; Zm00001d017618_P001; Zm00001d017618. DR KEGG; zma:100502511; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007305; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 44970 MW; 3A4F77D399AFED89 CRC64; MDQFAASGRF SREEEADEEQ EDASNSMREI SFMPPAAASS SSAAASASAS ASTSASACAS GSSSAPFRSA SASGDAAGAS GSGGPADADA EAEAVEKEHM FDKVVTPSDV GKLNRLVIPK QYAEKYFPLD AAANEKGLLL SFEDSAGKHW RFRYSYWNSS QSYVMTKGWS RFVKEKRLVA GDTVSFSRAA AEDARHRLFI DWKRRVDTRG PLRFSGLALP MPLPSSHYGG PHHYSPWGFG GGGGGGGGFF MPPSPPATLY EHRLRQGLDF RSMTTTYPAP TVGRQLLFFG SARMPPHHAP PPQPRPFSLP LHHYTVQPSA AGVTAASRPV LLDSVPVIES PTTAAKRVRL FGVNLDNNPD GGGEASHQGD ALSLQMPGWQ QRTPTLRLLE LPRHGGESSA ASSPSSSSSS KREARSALDL DL // ID C5WS84_SORBI Unreviewed; 312 AA. AC C5WS84; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER93797.2}; GN ORFNames=SORBI_001G165000 {ECO:0000313|EMBL:EER93797.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER93797.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER93797.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER93797.2; -; Genomic_DNA. DR RefSeq; XP_002466799.1; XM_002466754.1. DR EnsemblPlants; EER93797; EER93797; SORBI_001G165000. DR GeneID; 8062258; -. DR Gramene; EER93797; EER93797; SORBI_001G165000. DR KEGG; sbi:SORBI_01g014370; -. DR eggNOG; ENOG410JU89; Eukaryota. DR eggNOG; ENOG4110744; LUCA. DR HOGENOM; HOG000244154; -. DR InParanoid; C5WS84; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 215 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 215 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 36114 MW; F464403F73A0D12C CRC64; MRKPGKRSRE RDAYFYSDHN DEKDKYFFKV LVGDFRERLA VPEKFEQHFR GLIGNRVKLE SRCGHTFDVE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDKTSRFK VFIFDLSCCE KVPPCLVKRN HICGRETREM HIEISSSCGD LPMNVTTNSS TSLSDSSGDS VRPEDQKSHC VPGYILPRGT CLTCVQMKKL KERVRASSSR IPIYGCIINN GNVHGRSQAL NIPRVYADVY LPFEDQTLML RCRGKSWEVR CVIKKDKKRV KRLMKGWKQF ARDNKLRLGD LCLFELLENT KYTMNVHVIR AK // ID C5WS89_SORBI Unreviewed; 332 AA. AC C5WS89; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER93801.2}; GN ORFNames=SORBI_001G165300 {ECO:0000313|EMBL:EER93801.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER93801.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER93801.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER93801.2; -; Genomic_DNA. DR RefSeq; XP_002466803.1; XM_002466758.1. DR UniGene; Sbi.18842; -. DR EnsemblPlants; EER93801; EER93801; SORBI_001G165300. DR GeneID; 8062495; -. DR Gramene; EER93801; EER93801; SORBI_001G165300. DR KEGG; sbi:SORBI_01g014400; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; C5WS89; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 37810 MW; 74C7BAACD498356E CRC64; MRKPSKGCNK GNANCQWSDR TDDHGKHFFK ILIGDFHKRL VIPGKFAEHF RDKIEGSITL ESLGGYTFEV QVAKNFGRIV LQSGWKSFVS AHDLKKMDFL VFKYNGMSRM KVLIFDPSGC EKVPPCFVTK NAINGGKKRE EAIVIASGDA NNHPMRAPET KKKALKQRDR SRIIISSSRS LSKSSGGMTS SEDDEAHSVP SYMLPQGTSL DSMQKKKLKE RLRSMCSEIP IYVCVMKKYN ISGSSKSMVF SKKYSDVCLP IKSTRWILQC HGKSWEMTCR ILVRKDQGEM KRLRNGWARF AGDNNLQLGD ICVFEQLKTK KYMMNVHIIR KD // ID C5WS93_SORBI Unreviewed; 540 AA. AC C5WS93; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER93805.2}; GN ORFNames=SORBI_001G165700 {ECO:0000313|EMBL:EER93805.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER93805.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER93805.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER93805.2; -; Genomic_DNA. DR RefSeq; XP_002466807.1; XM_002466762.1. DR EnsemblPlants; EER93805; EER93805; SORBI_001G165700. DR GeneID; 8062499; -. DR Gramene; EER93805; EER93805; SORBI_001G165700. DR KEGG; sbi:SORBI_01g014440; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR HOGENOM; HOG000240246; -. DR InParanoid; C5WS93; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011011; Znf_FYVE_PHD. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF57903; SSF57903; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|SAAS:SAAS00430958}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; Zinc {ECO:0000256|SAAS:SAAS00430958}; KW Zinc-finger {ECO:0000256|SAAS:SAAS00430958}. FT DOMAIN 245 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 481 538 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 245 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 481 538 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 540 AA; 61336 MW; 4B0C880A0F52DB0F CRC64; MDAIRVRAIR ILLKCYRFLR SMLPLLANNI VCEVCGDIGF RQLLLCCRDC KRYAVHQYCL DKVVFDASLI EWFCYECQQR RGEVTCIRSL EQVSSEGPLS HGQFGTLVHQ LTTKRVESVR DAGPYSPNGG CDELFSCPGI ENIPRVRERS VDPINISRIS EHDTTQASAS SERSTECQTA SSCRREKTAK MAMASSSSEE SGEDILSEKE FLEYVLAYRC YLSKAQKKRV MELIQEIQPE FTIFISIMRR GNVQPPGPFL GITRDYASAH FPDGSKHVTL ETPGKSKKWH PKFYRRDESR NYMLIGQWLD FVRDNHVQEG DICLLVPTKD EIRCTFMVYV LHEATHSRGG AGFQMGGPFP GASSAHMASE IHIEEEPIAG EHVSSESDMQ EIPHEPLEGG DSDDQFVPPY IVPCKSPLSK SQKRIVEERV RAIRSEIPIC VAVMKNNNVG VAQRWMLELG SRYGSVYLPT KGQNIWLQCG GKTWKAKMMF HNGRRWFLNG GWPNFARGNG LRVGDICLFE LKKKESKLTM AVHIIRKEKF // ID C5WS94_SORBI Unreviewed; 523 AA. AC C5WS94; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER93806.2}; GN ORFNames=SORBI_001G165900 {ECO:0000313|EMBL:EER93806.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER93806.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER93806.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER93806.2; -; Genomic_DNA. DR RefSeq; XP_002466808.1; XM_002466763.1. DR EnsemblPlants; EER93806; EER93806; SORBI_001G165900. DR GeneID; 8062500; -. DR Gramene; EER93806; EER93806; SORBI_001G165900. DR KEGG; sbi:SORBI_01g014450; -. DR HOGENOM; HOG000240246; -. DR InParanoid; C5WS94; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 261 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 468 521 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 261 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 468 521 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 59473 MW; EC5C2CBD5C0D3177 CRC64; MKKPCDHCKR YVDHLDEKNQ SMSCFLRRMT ARPKHIMIVP NKFLKHFVGK LSQTIKLESP NGSVYNVEVT ECYNKMVLAH GWEEFVGAHH IKENDFLLFR HIENSVFKVL IFDSDGCEKI ICCDCIKSIP SVGETRVDYV DISSSSQFDT IGLSRELSSR HGENLKMTVT SSSSGEDIPS ENESFESDDL QAPGADYIVS HRTYLSQEQK ERVTLLIQEI QPKTTVYIAV MRKSNVHPLA PSVDIIKQYA FAYFPHGNTI VTLRRPGKSR KWHPKFNTTK GGVYRLQGQW LDFVRDNHVQ EGDICAFLPE KLGRSFTFIV YVLCAAATRS RNETRFQRAG PCPGGGSSPK MASEVHTKEP TDGEHVSSER DMNGILHESL ESKDSGSPSQ PLYFLPSKSS LSKSQKKIVE ERVQAIKSEV PIYVAIMRQF SLGISRKPVL ELGSRYATAV NLPNGEQAVV LWCGRNIWKA SMVTYRQRHY LCGGWHKFVR DNDLSLGDIC LFELKRNERE LTMMVHIIPM KEL // ID C5WS98_SORBI Unreviewed; 513 AA. AC C5WS98; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER93810.1}; GN ORFNames=SORBI_001G165700 {ECO:0000313|EMBL:EER93810.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER93810.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER93810.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER93810.1; -; Genomic_DNA. DR RefSeq; XP_002466812.1; XM_002466767.1. DR UniGene; Sbi.5532; -. DR ProteinModelPortal; C5WS98; -. DR EnsemblPlants; EER93810; EER93810; SORBI_001G165700. DR GeneID; 8062504; -. DR Gramene; EER93810; EER93810; SORBI_001G165700. DR KEGG; sbi:SORBI_01g014480; -. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR HOGENOM; HOG000240246; -. DR InParanoid; C5WS98; -. DR OrthoDB; EOG09360DT7; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011011; Znf_FYVE_PHD. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF57903; SSF57903; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|SAAS:SAAS00430958}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; Zinc {ECO:0000256|SAAS:SAAS00430958}; KW Zinc-finger {ECO:0000256|SAAS:SAAS00430958}. FT DOMAIN 218 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 454 511 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 218 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 454 511 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 513 AA; 58138 MW; A05B058A6F605ECD CRC64; MNIVCEVCGD IGFRQLLLCC RDCKRYAVHQ YCLDKVVFDA SLIEWFCYEC QQRRGEVTCI RSLEQVSSEG PLSHGQFGTL VHQLTTKRVE SVRDAGPYSP NGGCDELFSC PGIENIPRVR ERSVDPINIS RISEHDTTQA SASSERSTEC QTASSCRREK TAKMAMASSS SEESGEDILS EKEFLEYVLA YRCYLSKAQK KRVMELIQEI QPEFTIFISI MRRGNVQPPG PFLGITRDYA SAHFPDGSKH VTLETPGKSK KWHPKFYRRD ESRNYMLIGQ WLDFVRDNHV QEGDICLLVP TKDEIRCTFM VYVLHEATHS RGGAGFQMGG PFPGASSAHM ASEIHIEEEP IAGEHVSSES DMQEIPHEPL EGGDSDDQFV PPYIVPCKSP LSKSQKRIVE ERVRAIRSEI PICVAVMKNN NVGVAQRWML ELGSRYGSVY LPTKGQNIWL QCGGKTWKAK MMFHNGRRWF LNGGWPNFAR GNGLRVGDIC LFELKKKESK LTMAVHIIRK EKF // ID C5WSA0_SORBI Unreviewed; 353 AA. AC C5WSA0; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER93812.1}; GN ORFNames=SORBI_001G166000 {ECO:0000313|EMBL:EER93812.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER93812.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER93812.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER93812.1; -; Genomic_DNA. DR RefSeq; XP_002466814.1; XM_002466769.1. DR EnsemblPlants; EER93812; EER93812; SORBI_001G166000. DR GeneID; 8062506; -. DR Gramene; EER93812; EER93812; SORBI_001G166000. DR KEGG; sbi:SORBI_01g014500; -. DR HOGENOM; HOG000240246; -. DR InParanoid; C5WSA0; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 256 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 256 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 39472 MW; 860D5C64786A5C46 CRC64; MARSGGSRTR MKKPCDCCKR YLDHLEQKNQ SLSCFLGHMT ANFKHSMVVP NRFAKQFGGR LSGTIKLESP NGNLYDVEVS EHLNKLMLGH GWEAFVDANH IEENDFLIFR HIEKSHFEVM IFDTDGCEKV FSCAGLRNTP CVQERSVDSV GISSSSCHDT TESSGSERFA RSEKSGSSNH GKTENMATTS SSSEESGEHV SWKSDMEETS DGSPNSKDSG GPAEPSYILP GMSGLSRSQK KIIEAKVRAI KSEVPIYIAI MRKTNAAVSK LEFGTKYAAA HLPASEQTMV LQCKRKIWEA RMKVTSGHRR FLGRGWTTFV RDNGLRVGDL CLFELKNERK LIMEVHIISR EQF // ID C5WTM5_SORBI Unreviewed; 264 AA. AC C5WTM5; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER95290.1}; GN ORFNames=SORBI_001G459400 {ECO:0000313|EMBL:EER95290.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER95290.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER95290.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:EER95290.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA Mccann M.C., Ming R., Peterson D.G., Rahman M., Ware D., Westhoff P., RA Mayer K.F., Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.S.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER95290.1; -; Genomic_DNA. DR EMBL; CM000760; KXG39895.1; -; Genomic_DNA. DR RefSeq; XP_002468292.1; XM_002468247.1. DR STRING; 4558.Sb01g043110.1; -. DR EnsemblPlants; EER95290; EER95290; SORBI_001G459400. DR GeneID; 8054206; -. DR Gramene; EER95290; EER95290; SORBI_001G459400. DR KEGG; sbi:SORBI_01g043110; -. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR HOGENOM; HOG000238878; -. DR InParanoid; C5WTM5; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 264 AA; 30222 MW; 658540BCA6FC97BD CRC64; MAGLSDFEFF KILIPGMYEE ALRLPTKFGE ILGARRDLKL RLTGGEMMPL WDVEVFVDEK NGDMYLHKGW KKFARAHDLR KGYMLVFRYD DDGRGDLVVT VFDLTTCRKE YLHAGAGGGG NTNPGAGGGR SLPIAEPSHF AVTLRQCNLE AKQNQYLNVP VEFQDAHGYV RRRRVELQMG GRSWMVNLKR SKRLLGDRSS FKYGWHQFCV DNGLKVGDVC FFRVIREGSR CGDDDEDEEW EPEEEDDEHV LKVEVRKKNG TFVS // ID C5WUE4_SORBI Unreviewed; 274 AA. AC C5WUE4; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER92015.1}; GN ORFNames=SORBI_001G313800 {ECO:0000313|EMBL:EER92015.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER92015.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER92015.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER92015.1; -; Genomic_DNA. DR RefSeq; XP_002465017.1; XM_002464972.1. DR EnsemblPlants; EER92015; EER92015; SORBI_001G313800. DR GeneID; 8062866; -. DR Gramene; EER92015; EER92015; SORBI_001G313800. DR KEGG; sbi:SORBI_01g030520; -. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; C5WUE4; -. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 29620 MW; 1122E48F06FB5152 CRC64; MEFTPAHARV VEDSERPRGG VAWVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD ASAAAAAAAA GGGKGLVLSF EDRAGKAWRF RYSYWNSSQS YVMTKGWSRF VKEKRLGAGD TVLFARGAGG EGAPRGRFFI DFRRRRQDLA FLQPPLASAQ RLLPLPSVPI CPWQDYGAST PAPSRHVLFL RPQVPAAVVL TSMPVHVAAS AVEATRSKRV RLFGVNLDCP PDAAEDGATV TRRTASTLLQ LPSPSSSTSS STAGKDACSL DLGL // ID C5WUX4_SORBI Unreviewed; 239 AA. AC C5WUX4; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER92740.1}; GN ORFNames=SORBI_001G479600 {ECO:0000313|EMBL:EER92740.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER92740.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER92740.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER92740.1; -; Genomic_DNA. DR RefSeq; XP_002465742.1; XM_002465697.1. DR EnsemblPlants; EER92740; EER92740; SORBI_001G479600. DR GeneID; 8057656; -. DR Gramene; EER92740; EER92740; SORBI_001G479600. DR KEGG; sbi:SORBI_01g044910; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; C5WUX4; -. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 26825 MW; E4C5494F0BB7BF5D CRC64; MVTAAAETMG MSPYEAARER NVQENKRKME ALNLRHLSAV IKEAPKTPSP LKPKRRRIIE NAVVVPSPPR RSRRLAQLPE VKYAEIAPHT AERMTRSPRK PADLIYLARS GTVSMKARLE ATRKAEELES QLDPDIPSFV KAMLHSHVVR GFWLQLPCHF CHTYMPKQDS IITLVDEKGE EFATNYLAYK KGLSGGWAGF ALCHGMHDGD AAVFQLIKPT TFKVYIVRAA SDDGSEVDE // ID C5WYD5_SORBI Unreviewed; 689 AA. AC C5WYD5; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_001G217300 {ECO:0000313|EMBL:EER94066.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER94066.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER94066.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER94066.1; -; Genomic_DNA. DR RefSeq; XP_002467068.1; XM_002467023.1. DR UniGene; Sbi.2635; -. DR STRING; 4558.Sb01g019130.1; -. DR EnsemblPlants; EER94066; EER94066; SORBI_001G217300. DR GeneID; 8067406; -. DR Gramene; EER94066; EER94066; SORBI_001G217300. DR KEGG; sbi:SORBI_01g019130; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5WYD5; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 594 680 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 689 AA; 75405 MW; 147BD783B82F9C11 CRC64; MKEAREEERC LDPQLWHACA GGMVQMPPVR SRVYYFPQGH AEHAHAGGAA DLAAGARPLP PLVLCAVTGV RFLADPETDE VFAKIRLVPL APGEVEFREP DEFGLGVGGV GVDPADAREK LSSFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYRADPP VQTVLAKDVH GEVWKFRHIY RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF LRTEHGELCV GIRRAKRVSC GGMECMSGWN APGYGALSAF LKDEEGKMIK GPGGYMRGRG KVKITDVVEA ASLAASGQPF EVVYYPRAST PEFVVKAASV QNAMRNQWCP GMRFKMAFET EDSSRISWFM GTIASAQVAD PIRWPNSPWR LLQVTWDEPD LLQNVKCVNP WLVEIVSSIP PIHLGPFSPP RKKLRMPQHP DFPFDGQLLN PIFHGNPLGP SNSALRCFSD IAPAGIQGAR HAQFGLPLTD HQLSKLHLGL FQGGGFNRFD AITPPSHISK GFVISSAPVN ESVSCLLTIG TPQATEKSDD RKKPHIMLFG KPILTEQQMN SRGSRETFSP EVTGNSSSDG NVQKTGNVSD GSGSSICIGF SSQGHEASEL GLEAGHCKVF MESEDVGRTI DLSVFGSYEE LYGQLADMFG IEKAEIMSHL CYRDAAGAVK HTGEEPFSDF MKVARRLTII ESTEGRLQKP LIEYMMERA // ID C5X0X2_SORBI Unreviewed; 330 AA. AC C5X0X2; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER95618.1}; GN ORFNames=SORBI_001G528200 {ECO:0000313|EMBL:EER95618.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER95618.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER95618.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000760; EER95618.1; -; Genomic_DNA. DR RefSeq; XP_002468620.1; XM_002468575.1. DR EnsemblPlants; EER95618; EER95618; SORBI_001G528200. DR GeneID; 8085727; -. DR Gramene; EER95618; EER95618; SORBI_001G528200. DR KEGG; sbi:SORBI_01g049150; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; C5X0X2; -. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000000768; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 35884 MW; 155BED119041D726 CRC64; MEFTAPPTAA RSGGGEERAA EHQQQQQQQL AAVEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDAA ANEKGLLLSF EDRTGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD TVSFGRGVGD AARGRLFIDW RRRPDPPVHH QYHHRLPLPS VVPYAPWPHA HHHHYPAAAA AVGVGVGAGA GAARTTTVLH LPPSPSSLYD PHLRHVGYDA YGAGTRQLLF YRPLHHQQPS TAVVLDSVPV RLPTTPGQHA EPPAPVVASS ASKRVRLFGV NLDCAGSEEE NGGGGGWRTS APPTPHGLPS PPSSSSSSSG KARCSLNLDL // ID C5X5M1_SORBI Unreviewed; 957 AA. AC C5X5M1; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER99914.1}; GN ORFNames=SORBI_3002G418200 {ECO:0000313|EMBL:EER99914.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER99914.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER99914.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:EER99914.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., RA Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., RA Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., RA Bharti A., Chapman J., Feltus F., Gowik U., Grigoriev I., Lyons E., RA Maher C., Martis M., Narechania A., Otillar R., Penning B., RA Salamov A., Wang Y., Zhang L., Carpita N., Freeling M., Gingle A., RA Hash C., Keller B., Klein P., Kresovich S., Mccann M., Ming R., RA Peterson D., Rahman M., Ware D., Westhoff P., Mayer K., Messing J., RA Sims D., Jenkins J., Shu S., Rokhsar D.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000761; EER99914.1; -; Genomic_DNA. DR EMBL; CM000761; KXG36948.1; -; Genomic_DNA. DR RefSeq; XP_002463393.1; XM_002463348.1. DR UniGene; Sbi.4896; -. DR STRING; 4558.Sb02g043000.1; -. DR EnsemblPlants; EER99914; EER99914; SORBI_002G418200. DR GeneID; 8074451; -. DR Gramene; EER99914; EER99914; SORBI_002G418200. DR KEGG; sbi:SORBI_02g043000; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; C5X5M1; -. DR OMA; ANNGSKM; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000000768; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 365 466 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 626 676 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 365 466 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 957 AA; 104988 MW; A68F6987D8D0029E CRC64; MAMPGGGAVA AKRCMNPACG GPASSVVGAG GDWRKGWPLR SGGFALLCDK CGLAYEQFVF CDIFHQKESG WRDCSFCGKR LHCGCVASKN SYDLLDSGGV QCVTCMKNSA AQSASGQVVP KLFQCPNNLR FLGKTDELLS SRKFEQPPSL MLDSRNDDIA IVNKSNHLFM VRGIEAGQSS NILRQKEIEN GSRQIKWEQP TLSIGDMGRP FLTRSQSALE SPQCTRRDDN KDPTTDSTSE SFSEACLSMS LGIASNGNRM EATSTAERPM LSPTTAIAEG RELATTLSPY QHAQRARHFL TRPPRVGEGA AFDPTRDMFP HLRVARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR PLTIQDARGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIDPGGKLVM GFRKATNTVS LPDSQISAIA NGSILSETLF STANENIGVV SGYPGFLHSI KGAADLHPSS LYDHHMNSAD GDVSWNKADK FGGRPDEGSL QFLQKRSRNI GSKSRRFLID AEDAMELKLT WEEAQELLRP APTAKPTVVM IEDYEFEEYD EPPVFAKRSI FTIRATGEQD QWIQCDECSK WRRLPLNVIV ASKWTCTDNS WDPKSCSCSA PEELTPKELQ SVMQQYEEMR RRKGSYGLKL NVAEMDASSL DALATAAVFG EVGNQGTASV ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PSCTCNVCMT VRRRFKTLMM RKKQRQSERE EAEASKKITW VNREEPEGSN LSRSPQTLDT TRDNSDVTMF DKVADMNKGH IDLNFHPAPA ARGDHGQHGV QQPRPVSMMG LLEVASRPLD NYMKQNGLTS LVGEQGGGSS STATVPPGPV ESEERTSNEG RVTSASAERE PDAMAIDEAG ENQQDKAADD AAAPAAT // ID C5XFL5_SORBI Unreviewed; 701 AA. AC C5XFL5; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES04085.1}; GN ORFNames=SORBI_3003G398200 {ECO:0000313|EMBL:EES04085.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES04085.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES04085.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES04085.1; -; Genomic_DNA. DR RefSeq; XP_002458965.1; XM_002458920.1. DR ProteinModelPortal; C5XFL5; -. DR STRING; 4558.Sb03g043480.1; -. DR EnsemblPlants; EES04085; EES04085; SORBI_003G398200. DR GeneID; 8078714; -. DR Gramene; EES04085; EES04085; SORBI_003G398200. DR KEGG; sbi:SORBI_03g043480; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR HOGENOM; HOG000238595; -. DR InParanoid; C5XFL5; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 531 633 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 531 633 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 74251 MW; D6C4E86F7DDE49FB CRC64; MDASGGSSPP HSQENPPEHG GDMGEAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS STFSSSSSSN SSSAYTNTTA GGAGGGGAAA AGEPSEPASA GEGFDALDDI DQILDFASLS MPWDSEPFPE VSLMLEDAMS APPNPVCDVR REEKPVLEGT GREEACMDAS SVAAGEELPR FFMEWLTSNR ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GNMQLLKLIL TWVQNHHLQK KRPRDVMEEA AGLHGQLPSP GANQGYEFPA GGQDMAAGGG TSWMPYQQQP FTPPAYGGDA VYPNAAGQQY PFHQSSSTSS VVVNSQPFSP PTVGDMHGAG GANMAWPQQY VPFPTPGAST GSYPMPQPFS AGFGGQYAAA GAAGGHPTMA PQRMAGVEAS ATKEARKKRM ARQRRLSCLQ QQRNQQLNLG QIQGSVHPQE PSPRSAHSTP VTPSAGGWGF WSPSSQQQVQ NPLSIKSNSS GEPVPLSLEA VTAPPAKPAP GARLDDSPQR LAAASDKRQG AKADKNLRFL LQKVLKQSDV GSLGRIVLPK KEAEVHLPEL KTRDGISIPM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG EFVRSNELQE GDFIVIYSDV KSGKFLIRGV KVRPPAQEQG NGSSAAGKHK LMSPAGPEKA SVPGDADVDG VSGACKGRSP QGVRRDRQQG AAAMNQMAVS I // ID C5XG18_SORBI Unreviewed; 702 AA. AC C5XG18; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 57. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3003G251700 {ECO:0000313|EMBL:EES03412.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES03412.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES03412.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES03412.1; -; Genomic_DNA. DR RefSeq; XP_002458292.1; XM_002458247.1. DR STRING; 4558.Sb03g030740.1; -. DR EnsemblPlants; EES03412; EES03412; SORBI_003G251700. DR GeneID; 8080830; -. DR Gramene; EES03412; EES03412; SORBI_003G251700. DR KEGG; sbi:SORBI_03g030740; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5XG18; -. DR KO; K14486; -. DR OMA; READPMW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 702 AA; 77004 MW; 325FBEEA4904BC20 CRC64; MAGIDLNTVE EEDEEEAEAE APPVAARAGG GAVCLELWHA CAGPVAPLPR KGSAVVYLPQ GHLEHIGGDA DAAGAAVPPH VLCRVVDVTL HADGATDEVY ARVSLLPEDE EAERRARARV REDEDADRDG EDGAAMKPLA RTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ RPSQELVAKD LHGTEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGEDGVL RLGVRRAAQL KIVTPIPALH NQCSSQTTLG NVAQAVATRT VFHIYYNPRL SQSEFIVPYW KFTRSLNQPI SVGMRCRMRY ESDDASERRC TGIIIGSREA EPIWYGSKWK CLVVRWDDGI ECHWPNRVSP WEIEVTGSVS GSHMCAPNSK RLKPCLPQVN PEIVLPNGSV SSDFAGSVRF HKVLQGQELL GLKTHDGTAI SAFQATEASN LQYSDERSNM SNNILGIPRL GVRSPNGIPG FPYHCSGFGE SQRFQKVLQG QEVFRPFRGG CLADGHIRTA GMYQPKWPAP QGCDFPQPAK PVLVLQASSP SSVLMFPQTG SKITPLEYEY SCLDKDEDGR FDRTVPTQDM GRNNQTLSLW PHLVSGEAIE ECTGTENMHS SVSGAEHESN NESTVENGCK IFGISLAEKI RSCDEADSCS AKRNSGLQPS RSQILGSCWA TVHEHRSVVG RVVDVSATDM MI // ID C5XH00_SORBI Unreviewed; 704 AA. AC C5XH00; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3003G411900 {ECO:0000313|EMBL:EES02008.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES02008.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES02008.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES02008.1; -; Genomic_DNA. DR RefSeq; XP_002456888.1; XM_002456843.1. DR UniGene; Sbi.3872; -. DR STRING; 4558.Sb03g044630.1; -. DR EnsemblPlants; EES02008; EES02008; SORBI_003G411900. DR GeneID; 8081300; -. DR Gramene; EES02008; EES02008; SORBI_003G411900. DR KEGG; sbi:SORBI_03g044630; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5XH00; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 704 AA; 78702 MW; CA055E59B78CFCEB CRC64; MPPAAAMALP SQAPSNSGDP LYPELWRACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VAGNQMRLYD LPSKLLCRVL NVELKAETDT DEVYAQIMLM PEPEQTDVAA EKASSASAAS PRPAVRSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT QSPPTQELVA KDLHGMEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQLSNVPSSV ISSQSMHLGV LATAWHAINT KSMFTVYYKP RTSPSEFIIP YDQYMESVKN NYSIGMRFRM RFEGEEAPEQ RFTGTIVGCE NLDPLWPDSS WRYLKVRWDE PSTIPRPDRV SPWKIEPASS PPVNPLPLSS RVKRPRQNAP PPSPEASVLT KESAAKIDID SAQTQHQNSV LQGQEQMTLR NNLTESNDSD STVQKPMMWS PSPNGKAHTN FQQRPAMDSW MPMGRRETDF KDSRSAFKDA RTASQSFRDT QGFFMQAYDD NHHRLSFNNQ FQDQGSAHRF ADPYFYMAQQ PSLTVESSTR TQTANNDLRF WGDQNSIYGN PGDQQQQGFS FGQNPSSWLN QPFPQVEQPR VVRPHATVAP FDLEKTREGS GFKIFGFQVD TTSPSPAQLS SPLCAIREHV VQTRPSAPVN ELQPVQNECL PEGSVSTAGT ATENEKNIQQ AQPSSKDIQS KSQGASTRSC TKVV // ID C5XHG3_SORBI Unreviewed; 413 AA. AC C5XHG3; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 58. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES03472.1}; GN ORFNames=SORBI_3003G265200 {ECO:0000313|EMBL:EES03472.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES03472.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES03472.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES03472.1; -; Genomic_DNA. DR RefSeq; XP_002458352.1; XM_002458307.1. DR UniGene; Sbi.19461; -. DR EnsemblPlants; EES03472; EES03472; SORBI_003G265200. DR GeneID; 8063099; -. DR Gramene; EES03472; EES03472; SORBI_003G265200. DR KEGG; sbi:SORBI_03g031860; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR InParanoid; C5XHG3; -. DR KO; K09287; -. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 136 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 222 329 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 136 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 222 329 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 42485 MW; CB916B8C1560F414 CRC64; MDSASSLVDD TSSGSGGGGG ASTDKLRALA VAAAASGPPL ERMGSGASAV LDAAEPGAEA DSAAAAAPGA VGVGGKLPSS RYKGVVPQPN GRWGAQIYER HQRVWLGTFA GEADAARAYD VAAQRFRGRD AVTNFRPLAD ADPDAAAELR FLASRSKAEV VDMLRKHTYF DELAQNKRAF AAAAAAAASS AATTTASSLA NNNNNHSSLA SPSPATAREH LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL QLPSAGGESK GVLLNLEDAA GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK GLQAGDVVGF YRSSAVGAGA DTKLFIDCKL RPNSVATAST TTGPAVGSSP PAPAPAPVAT KAVRLFGVDL LTAPAATAAA PAEAMAAGCK RARDLASPPQ AAFKKQLVEL ALV // ID C5XIE6_SORBI Unreviewed; 390 AA. AC C5XIE6; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 54. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES01389.1}; GN ORFNames=SORBI_3003G281100 {ECO:0000313|EMBL:EES01389.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES01389.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES01389.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES01389.1; -; Genomic_DNA. DR RefSeq; XP_002456269.1; XM_002456224.1. DR EnsemblPlants; EES01389; EES01389; SORBI_003G281100. DR GeneID; 8069813; -. DR Gramene; EES01389; EES01389; SORBI_003G281100. DR KEGG; sbi:SORBI_03g033260; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR HOGENOM; HOG000082821; -. DR InParanoid; C5XIE6; -. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 378 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 378 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 390 AA; 44299 MW; 95FFCD629879DF63 CRC64; MPAEERQSPW ASGERRPHFF KVLMGDFKKR LKIPPDFCKH IPWEASRKAK TTLKEASMAA TLEGPSGRTW LVVIRRSAEG TFFTSGWPKF VQDQELRELE FLVFRHDGGT HFTAMVFDTT ACQREDLLLG TTACERQSNK RRRARTEPSR DANAKRPNKD SLGKELVPYR APREQQVSCS NSTPESAGAV KTEIEDGDEV ALCVMIPAPP PSPDHAPPKR GPEPQQVEDG AVKTRSIHED LQALADIPDS VRRYKGYVSR RRPVTGAERQ RAMELAYAFR SSLPYCVIRM STMHVYYSFM MRFPTGFSRQ HLPRERTDVV LRDPGGKAWV VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC VFELVGAAEF RVHVFRVVEP AVPAVRLRST // ID C5XJJ7_SORBI Unreviewed; 688 AA. AC C5XJJ7; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3003G003800 {ECO:0000313|EMBL:EES02172.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES02172.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES02172.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES02172.1; -; Genomic_DNA. DR RefSeq; XP_002457052.1; XM_002457007.1. DR UniGene; Sbi.5312; -. DR STRING; 4558.Sb03g000530.1; -. DR EnsemblPlants; EES02172; EES02172; SORBI_003G003800. DR GeneID; 8078083; -. DR Gramene; EES02172; EES02172; SORBI_003G003800. DR KEGG; sbi:SORBI_03g000530; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5XJJ7; -. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 668 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 688 AA; 76895 MW; 9A3E6772355357ED CRC64; MAQGRDPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LADQIKMFQV PNKILCKVVN VELKAETETD EMYAQITLQP EPDQMDLPTL PDPPLPETSR PVVHSFCKIL TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL LTTGWSTFVT SKKLIAGDAF VYLRSETGEQ RVGVRRLVQK QSTMPASVIS SQSMHLGVLA SASHAIKTNS IFLVYYRPRL SQSQYIVSLN KYLESSKIGF NVGMRFKMSF EGEDVPVKKF SGTVVDKGDL SPHWQGSDWK TLKVKWDEAT NFNGPERVSS WEIEPFDASA PAINIPVQPS MKNKRPRETA ESLDIHALEP AQEFWLSGRP EQHKTSISSN EPNCISVHQV AWTSERPGYS AMSSSICQNS AVIGSWFKDF NSSSKGASPS LPEISQKLFQ VTSNDARVPP WPGLSAYQAE ELSSKLSCNT ALCSYQTEEV APKFSIAVEE KKEPGMFRLF GVNLVNHTRS SGIADKMTVG VGETSMRGAG SFEDSGQLSA LSRVTKDHTH LVNESPREIQ SHQSCSGRNR IKVQMHGHAV GKAVDLGNLD GYVQLMGELE EMFEIKDLGS KEEWKVTFTN DENDTMEVGA VLWQEFCQMV RKIVIHPIGH GSHMEAWPCP GQDGKRDF // ID C5XPJ3_SORBI Unreviewed; 262 AA. AC C5XPJ3; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES00990.2}; GN ORFNames=SORBI_3003G203800 {ECO:0000313|EMBL:EES00990.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES00990.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES00990.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES00990.2; -; Genomic_DNA. DR RefSeq; XP_002455870.1; XM_002455825.1. DR EnsemblPlants; EES00990; EES00990; SORBI_003G203800. DR GeneID; 8082468; -. DR Gramene; EES00990; EES00990; SORBI_003G203800. DR KEGG; sbi:SORBI_03g026600; -. DR HOGENOM; HOG000239798; -. DR InParanoid; C5XPJ3; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 262 AA; 29784 MW; 5ADCA57DF85D91E4 CRC64; MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SATVSEAAAA AVKPSSAKKR KARVPRNATA EPLRRSGRIA NLPENEKPVY REDSDEERSD QDSDEERSDQ DSDEERSDQD SDEERSYQDS DERRVCRCIP GIPCGYATGY AISKAEELVQ KLGSSFHVFT LPMTLFHVTG VFRPGFPTYF CKYLPKRDTM ITLVDEEDDK FCMLYQPSKA ALSTGWGGFV VDHKLLDGDC LVFQLIERTM FKVYIIRAAS YLKASTDEAS SF // ID C5XPJ7_SORBI Unreviewed; 251 AA. AC C5XPJ7; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES00994.1}; GN ORFNames=SORBI_3003G204200 {ECO:0000313|EMBL:EES00994.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES00994.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES00994.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES00994.1; -; Genomic_DNA. DR RefSeq; XP_002455874.1; XM_002455829.1. DR EnsemblPlants; EES00994; EES00994; SORBI_003G204200. DR GeneID; 8082176; -. DR Gramene; EES00994; EES00994; SORBI_003G204200. DR KEGG; sbi:SORBI_03g026620; -. DR eggNOG; ENOG410JUQU; Eukaryota. DR eggNOG; ENOG41106N3; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; C5XPJ7; -. DR OMA; HIFRQSS; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 153 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 28607 MW; AEAF128520ED723D CRC64; MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SAAVREAAAA AKPSSAKKRK AQVPRDAAAE PLRRSGRVAN LPEKPIYREV KVNSPFLQVS KSNASVLWDA ATSVVAEPLR WSGRLANLPE KPMYREDSDE ERSYAISKAD ELVQELGSSF PIFTQPITLS HVTGGFWLDL PKYFCQKHLP KSDETITLVD EEDDESDTLY LVRKTGLSTG WKEFAIERKL LDGDCLVFQL IERTKFKVYI IRATSYFESE Y // ID C5XQN8_SORBI Unreviewed; 388 AA. AC C5XQN8; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 59. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES02511.1}; GN ORFNames=SORBI_3003G078100 {ECO:0000313|EMBL:EES02511.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES02511.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES02511.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000762; EES02511.1; -; Genomic_DNA. DR RefSeq; XP_002457391.1; XM_002457346.1. DR UniGene; Sbi.3941; -. DR EnsemblPlants; EES02511; EES02511; SORBI_003G078100. DR GeneID; 8073331; -. DR Gramene; EES02511; EES02511; SORBI_003G078100. DR KEGG; sbi:SORBI_03g006590; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR InParanoid; C5XQN8; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000000768; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 138 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 197 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 83 138 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 197 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 388 AA; 41361 MW; 96288E333A18B97D CRC64; MGIESMSPTA APAEDSSSSS SRFSAASTAT TESGAAQPRA ASAAPGGGAV VVGRDASLAD EQAVTSQPLA ASTAAAVAQG SSRFKGVVPQ PNGRWGAQIY ERHARVWLGT FADEEAAARA YDVAALRYRG REAATNFPGA GASAPELTFL AAHSKAEIVD MLRKHTYADE LRQGLRRGRG MGARAQPTPA WARSLLFEKA VTPSDVGKLN RLVVPKQHAE KHFPLKRAPE ASAAAATTGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYSSEKQ LFIDCKKTKT TTVATTDGAP VPAPAEKKPS EARVVRLFGV DIAGDGCQKR ARPVEIAFEH GPQQELLKKK QCVGVAHHRS PALGAFLL // ID C5XUJ9_SORBI Unreviewed; 1143 AA. AC C5XUJ9; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 57. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_004G037800 {ECO:0000313|EMBL:EES06260.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES06260.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES06260.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000763; EES06260.1; -; Genomic_DNA. DR RefSeq; XP_002453284.1; XM_002453239.1. DR UniGene; Sbi.21039; -. DR STRING; 4558.Sb04g003240.1; -. DR EnsemblPlants; EES06260; EES06260; SORBI_004G037800. DR GeneID; 8062825; -. DR Gramene; EES06260; EES06260; SORBI_004G037800. DR KEGG; sbi:SORBI_04g003240; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5XUJ9; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000000768; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1010 1094 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 144 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 600 627 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1143 AA; 127041 MW; 3AC6155A32F9D1A1 CRC64; MKQSPASSGV APAPVAAPAP DSTGAAACEG ERKAPAINAD LWYACAGPLV SLPPVGSLVV YFPQGHSEQV AASMQKDIDA HVPSYPNLPS KLICLLHSVT LHADPDTDEV YAQMTLQPVN TYGKEALQLS ELALKHARPQ MEFFCKTLTA SDTSTHGGFS VPRRAAEKIL PPLDFSMQPP AQELQARDIH DNVWTFRHIF RGQPKRHLLT TGWSLFVGGK RLFAGDSVIF VRDERQQLLL GIRRASRQPT NISSSVLSSD SMHIGVLAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKALYSNQIS LGMRFRMMFE TEELGMRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSM WEIEPIAAPF FICPQPFFGV KRPRQIDDES SEMENLFKRA MPWLGEEICI KDAQTQNTTM PGLSLVQWMN MNRQQSSTLA NTGIQSEYLR SLSNPAMQNL GAAELARQLY VQNHLLQQNS VQLNASKLPQ QMQPINELAK GSLSCNQLDT ITNHQELKQE VGNQQRQQQH INQTIPLSQA QANLVQAQVI IQTQMQQQQQ QQQQQPSPTR CQQGTSEQQL LLSQQHQDQN FQLQQQQQLL LQELQRQQQQ NQQQLNKLPG QLVNLAGQQA QLSDQELQLQ LLQKLQQQSL ISQPAVTLSR LPLMQEQQKL LLDMQQLSSS HSLAQQRIMP QQDSKVSLQA SQAPPTMKQE QQKLSQKQVA LANVSDVAFQ QISSTNVLSK AGSQLMIPGA TQSVLTEEIP SCSTSPSTAN NGNHLAHPTI GRNEHCKVNM EKVPQSSALM SIPTSSEAVT TPIMMKESSK LNHNLKENVI TSKSPTVGTG HDNLLNIVPS TENLETASSA TSLWPTQTDG LLHQGFPTSN LNQQQMFKDA LADVEIQEVD PTNNAFFGIN NDGPLSFPME TEGLLVSALN PVKCQTNLST DVENNYRIQK DAQQEISTSM VSQSFGQSDI AFNSIDSAIN DGAMLNRNSW PPAPPPQRMR TFTKVYKRGA VGRSIDIGRF SGYEELKHAL ARMFGIEGQL EDRQRIGWKL VYKDHEDDIL LLGDDPWEEF VNCVKCIRIL SPQEVQQMSL DGDLGNNVLS NQACSSSDGG NAWKPRCDQN PGNPSIGFYD QFE // ID C5XUU5_SORBI Unreviewed; 672 AA. AC C5XUU5; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 63. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_004G178500 {ECO:0000313|EMBL:EES06968.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES06968.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES06968.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000763; EES06968.1; -; Genomic_DNA. DR RefSeq; XP_002453992.1; XM_002453947.1. DR UniGene; Sbi.10485; -. DR STRING; 4558.Sb04g022830.1; -. DR EnsemblPlants; EES06968; EES06968; SORBI_004G178500. DR GeneID; 8068888; -. DR Gramene; EES06968; EES06968; SORBI_004G178500. DR KEGG; sbi:SORBI_04g022830; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5XUU5; -. DR KO; K14486; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000000768; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 624 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 672 AA; 74930 MW; 36A365C9308CFE1B CRC64; MADAGVARGP GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPPK ILCKVVNVEL RAETDSDEVY AQIMLQPEAE QNEPTSPDAE PPEPERCNVH SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELVAKDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKMSVGM RFKMRFEGDE SPERRFSGTI IGLGSMPANS TSPWANSEWR SLKVQWDEPS AILRPDRVSP WELEPLDATN PQPPQPPLRN KRARPPASPS IAPELPPVFG FWKSPAEPAQ AFSFSGLQRT QELYHSNPNS IFSSSLNVGF NSKNERSTPN NNHLYWTMRE TRTESYSASI NKAPTEKKQE SATSGCRLFG IEIGSAVSPV VTVASVGQDP PPALSVDVES DQLSQPSHAN KTDAPAASSE RSPNETESRQ VRSCTKVIMQ GMAVGRAVDL TRLDGYDDLH RKLEEMFDIH GELSANLRKW KVVYTDDEDD MMLVGDDPWN EFCRMVKRIY IYSYEEAKSL TPKAKLPVIG DTIKPDPNKL SPESDMPQSD TNSNAPVAAD KD // ID C5XVH8_SORBI Unreviewed; 911 AA. AC C5XVH8; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_004G051900 {ECO:0000313|EMBL:EES04575.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES04575.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES04575.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:EES04575.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA Mccann M.C., Ming R., Peterson D.G., Rahman M., Ware D., Westhoff P., RA Mayer K.F., Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.S.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000763; EES04575.1; -; Genomic_DNA. DR EMBL; CM000763; KXG29539.1; -; Genomic_DNA. DR RefSeq; XP_002451599.1; XM_002451554.1. DR UniGene; Sbi.20720; -. DR STRING; 4558.Sb04g004430.1; -. DR EnsemblPlants; EES04575; EES04575; SORBI_004G051900. DR GeneID; 8074686; -. DR Gramene; EES04575; EES04575; SORBI_004G051900. DR KEGG; sbi:SORBI_04g004430; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5XVH8; -. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000000768; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 779 863 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100418 MW; 805A0E340E67497A CRC64; MKLSPSASGG LQDQPGSPEE AEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIATDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPMAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGGRDDGLT SSLMWLRDRA NPGFQSLNFS GLGTSPWMQP RLDNSLLGLQ SDMYQTIAAA AALQSTTKQV SPSVMQFQQP QNIVDRSALL SSQILQQVQP QFQQIYPQNL NENKIQGQTE YLQQQLQRCQ SFNEQKPPLH SQQQEQESQQ QQCVQTPQDQ QMQQQKHLHN FHSLPDALSA FSQLSSATHS PSSTLQTVPA FSHQQNFPDT NISSLSPSSG SSMHGMLGQL PSEAASSLPC VAINTPVSVS DPWSSKRVAV ESVNPSRPHV VSPQIEQLDM ASCNMPQSSA LAPLPGRECL VDQDGNSDPQ NHLLFGVNID SQSLLMQGGI PSLQNDNSSG TIPYSTSNFL SSSQNDFPLN QSLHSAGCLD ESGYAPCAEN SEQANQQFAT FVKVYKSGNV GRLLDITRFS SYDELRSEVG RLFGLEGQLE DPLRSGWQLV FVDREDDVLL VGDDPWQEFV NSVSCIKILS PEEVQQMGKP GIQLLSSAPS RRLSNGCDSY ASMQESRSLS TGMAPVGSVE F // ID C5XXU7_SORBI Unreviewed; 708 AA. AC C5XXU7; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 60. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_004G221400 {ECO:0000313|EMBL:EES05458.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES05458.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES05458.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000763; EES05458.1; -; Genomic_DNA. DR RefSeq; XP_002452482.1; XM_002452437.1. DR UniGene; Sbi.18664; -. DR STRING; 4558.Sb04g026610.1; -. DR EnsemblPlants; EES05458; EES05458; SORBI_004G221400. DR GeneID; 8074777; -. DR Gramene; EES05458; EES05458; SORBI_004G221400. DR KEGG; sbi:SORBI_04g026610; -. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5XXU7; -. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000000768; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 622 702 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 76088 MW; 61E3F2E117559903 CRC64; MITFADLTEP ATAGAERCVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HALGLAGTAD LSAARVPALV PCRVAAVRYM ADPDTDEVFA RIRLVPLRGG EADAGGLEDD AADEQEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYAADPPVQT VVAKDVHGAA WKFRHIYRGT PRRHLLTTGW STFVNQKKLV AGDSIVFLRG DSGDLHVGIR RAKRGFCGAG GGGGEEAPSP GWDHYAGLMR GNVSPCAAAK ARGKVRPEDV AEAARLAAAG QSFEAVYYPR ASTPEFCVRA AAVRAAMRVQ WSPGMRFKMA FETEDSSRIS WFMGTVAGVQ VTDPIRWPQS PWRLLQVTWD EPDLLQNVKR VSPWLVELVS SMPAIHLASF SPPRKKPRIP AYPEFPFEGQ LLNPAFPPNP LPHGQHPHPH HHFLHAHPPF FPFPDGSAPA AIQGARHAQF VPSLSDLHLT HLQSSLLYPG LRRPDHVGPT IPIPARISTD LTIGGAPARD DDVPCALSIG ATNKQKPDAV KPAGLVLFGR TILTEQQMSL SSSGGATSPA ATTGNSSQLY WNAEKGPNVS EGSGSGVIQN SPTKNHASSE RLPWCVGDGG SQQQVSELGL EPGQCKVFVE SDTVGRNLDL SALSSFDELY RRLSEMFGIE GAELRSRVLY RCATGEVKHA GDEPFSDFVR SARRLTILTD AGSDNLGS // ID C5Y0X2_SORBI Unreviewed; 434 AA. AC C5Y0X2; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 05-OCT-2016, sequence version 2. DT 07-JUN-2017, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES07445.2}; GN ORFNames=SORBI_004G280500 {ECO:0000313|EMBL:EES07445.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES07445.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES07445.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000763; EES07445.2; -; Genomic_DNA. DR RefSeq; XP_002454469.1; XM_002454424.1. DR EnsemblPlants; EES07445; EES07445; SORBI_004G280500. DR GeneID; 8073207; -. DR Gramene; EES07445; EES07445; SORBI_004G280500. DR KEGG; sbi:SORBI_04g031680; -. DR eggNOG; ENOG410JXV3; Eukaryota. DR eggNOG; ENOG41103MP; LUCA. DR HOGENOM; HOG000239356; -. DR InParanoid; C5Y0X2; -. DR OrthoDB; EOG09360J07; -. DR Proteomes; UP000000768; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 434 AA; 45794 MW; F235312750BDEFDD CRC64; MDQFAASGRF SREEEADEEQ EDASNSMREI SFMPAAAAAG TAPSSSAAAS AASTSASASA ASGSSSAAAP FRSASGDAAG ASGSGGGGGA AADVEAVEKE HMFDKVVTPS DVGKLNRLVI PKQYAEKYFP LDAAANEKGL LLSFEDSAGK HWRFRYSYWN SSQSYVMTKG WSRFVKEKRL VAGDTVSFSR AAAEDARHRL FIDWKRRVDT RGPLRFSGLA LPMPLASHYG PHHYSPWGFG IGGVGGGGGG GGFFMPPSPP ATLYEHRLRQ GLDFRSMTNY PAPTVGRQQL LFFGSARMPP HHAPAPQPRP LSLPLHHFTV QPSAAAGVTA ASRPVVLDSV PVIESPTTAA KRVRLFGVNL DNNPLSEPDG GVGEASHQGN ALSLQMPGWQ QRTTPTLRLL ELPRHGAAES SAASSPSSSS SSKREARSAL DLDL // ID C5Y6T0_SORBI Unreviewed; 534 AA. AC C5Y6T0; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES08163.2}; GN ORFNames=SORBI_005G073500 {ECO:0000313|EMBL:EES08163.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES08163.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES08163.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000764; EES08163.2; -; Genomic_DNA. DR RefSeq; XP_002449175.1; XM_002449130.1. DR EnsemblPlants; EES08163; EES08163; SORBI_005G073500. DR GeneID; 8056280; -. DR Gramene; EES08163; EES08163; SORBI_005G073500. DR KEGG; sbi:SORBI_05g006045; -. DR eggNOG; ENOG410JUDC; Eukaryota. DR eggNOG; ENOG41106ZC; LUCA. DR InParanoid; C5Y6T0; -. DR OrthoDB; EOG09360OVS; -. DR Proteomes; UP000000768; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 426 521 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 148 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 426 521 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 534 AA; 59866 MW; 2B07AB8755733C88 CRC64; MAPLRISSSE DGKWERRPTP ARTSGLLSRL SKFRIRRRPS KFHGFILHNE KRTTMRGRPK KQQGTTSSAA AAVKEREAAR GRPRSKGKET EMGGEGQEPA TEKQKKTQGK GMEKEKEKEK NTAVREDGEQ DDNNEKEKTA AGAGNVCPQF FKVFFPELSG ERLKIPPMFR QHLQEQPTGP VSLRGPSGKK WQATLASESE AWFFEQGWKE FVTDHSINKG YFLVFTYDGP SQFSVVVFSP SGVTDPIALK AKPTNEVVVK IEEDEEGIQG DMDAGGASEV PIPPTQEGNV VTGRRTRAMT AGASEIPPLP TEEGNVVTGK RTRAVTDLPA DADASKRIQA DKRRSQAGTS KDGLTIVRNA TFSLLDESKT FNKTQVRDKN VPRSGKFLLK TSRAPVVISQ RRPVTEEERD LALRKANEFK SKYPFTVQIM MESYVYVGFF MNIACDFVRK SLPHTNKKMT LWDPLGKPWE VNYVYYSDRS VGSFSGGWGK FALGNNLEKF DVCIFELFKE DNIKVHIYRV VPEITPLLRA SNKD // ID C5Y8U9_SORBI Unreviewed; 661 AA. AC C5Y8U9; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 62. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_006G089500 {ECO:0000313|EMBL:EES10850.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES10850.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES10850.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; EES10850.1; -; Genomic_DNA. DR RefSeq; XP_002446522.1; XM_002446477.1. DR UniGene; Sbi.6549; -. DR STRING; 4558.Sb06g017490.1; -. DR EnsemblPlants; EES10850; EES10850; SORBI_006G089500. DR GeneID; 8080341; -. DR Gramene; EES10850; EES10850; SORBI_006G089500. DR KEGG; sbi:SORBI_06g017490; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5Y8U9; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 643 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 73202 MW; A54D15FDDE77B895 CRC64; MAAAMDAPNP AAAAGSGGMP SDALYRELWH ACAGPLVTVP RQGERVYYFP QGHMEQLEAS THQQLDQYLP MFNLPPKILC SVVNVELRAE ADSDEVYAQI MLQPEADQNE LTSLDPEPQE PEKCTAHSFC KTLTASDTST HGGFSVLRRH AEECLPQLDM SLNPPCQELV AKDLHGTEWH FRHIFRGQPK RHLLTTGWSV FVSSKRLVAG DAFIFMRGEN GELRVGVRRL MRQVNSMPSS VISSHSMHLG VLATASHAIS TGTLFSVFYK PRTSRSDFIV SVNKYLEAKK QKISVGMRFK MRFEGDEAPE RRFSGTIIGI GSLPAMSKSL WADSDWRSLK VQWDEPSSIL RPDRISPWEV EPLDAANPQS PQPPPRPKRP RPPASPCMVS ELPSGFGLWK SPTESSRTLS FSEPQRAREL FPSIPTSTFS SSSNVSFNSK NEPSMLTTQF YWSARDTRAD SCAASTNTVI VEKKQEPSSG GCRLFGIDIC SAEEEVLPVV TAPGVGYEQT AASVELNSDK LSQGSDVNNS DAPAASSERS PLESQSRQVR SCTKVIMQGM AVGRAVDLTK LSGYSDLCQK LEEMFDIHGE LGCTLKKWRV IFTDDEDDMM LVGDDPWDEF CRMVKRIYIY TYEEAKKLTS KSKLPVSSDS SKLSAVNSLS E // ID C5Y9Z0_SORBI Unreviewed; 946 AA. AC C5Y9Z0; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 60. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_006G255300 {ECO:0000313|EMBL:EES13038.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13038.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES13038.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; EES13038.1; -; Genomic_DNA. DR RefSeq; XP_002448710.1; XM_002448665.1. DR UniGene; Sbi.12926; -. DR STRING; 4558.Sb06g031900.1; -. DR EnsemblPlants; EES13038; EES13038; SORBI_006G255300. DR GeneID; 8082556; -. DR Gramene; EES13038; EES13038; SORBI_006G255300. DR KEGG; sbi:SORBI_06g031900; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5Y9Z0; -. DR KO; K14486; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 843 927 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 946 AA; 103750 MW; A1F7308B46B82CF7 CRC64; MASAQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTKKIPNSR IPNYPSLPSQ LLCQVHNITL HADKETDEIY AQMTLQPVHS ETDVFPIPSL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLVG VRRATRQQPA LSSSVLSTDS MHIGVLAAAA HAASSGGSFT IYYNPRTSPS PFVIPLARYN KATYLQPSVG MRFAMMFETE ESIKRRCTGT IVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSLWD IETPENMVFP SPLNSKRQCL PSYAVPGLQI GSVNMSSIPR AQGSPFGNLQ QMPGSGSDLA LLLLNQSGQN LGSPIACQQS SFSSIIQNAK HSYFPPSTFG ASTGSMKQET MPSNEAPQQL NALGIQKGDQ VSCEVQPGID SISAREMSVK PRGPRSTDSY SSQSISDQNG KGEPRTKSRR SKKSSSHKTI SDKSELSSLP SQICDKQRHG SEPTLVDCGA EQATCGNIED SSGAPTRGDF AGELQVLEVE QHELLSPPKL ESSKSPDGGK SVSSFPNQGC FSQFLEGLDW MIPPSYYQDS NGIQSATASD NIFNPSEGIP SAMNTDGMEA FQTSCLSECF PNSIQEFINS PDINTLTFMS PEMQHLDAQH DGSNLPSTSN SYVQMSFSEE SQSASLSGLH MEAIHINSSC SQPLATGSFD AGTFSKLSNM KECQALPLQE IHNGSMGTPS CSMDAAAEYS MDRSVKPMKP PVRTYTKVQK LGSVGRSIDV TRFRDYHELR SAIACMFGLQ GKLEHPGGSD WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGVHVLN DCIQIA // ID C5YAI1_SORBI Unreviewed; 434 AA. AC C5YAI1; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES13098.1}; GN ORFNames=SORBI_006G266400 {ECO:0000313|EMBL:EES13098.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13098.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES13098.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; EES13098.1; -; Genomic_DNA. DR RefSeq; XP_002448770.1; XM_002448725.1. DR UniGene; Sbi.6064; -. DR EnsemblPlants; EES13098; EES13098; SORBI_006G266400. DR GeneID; 8076460; -. DR Gramene; EES13098; EES13098; SORBI_006G266400. DR KEGG; sbi:SORBI_06g032870; -. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR HOGENOM; HOG000241121; -. DR InParanoid; C5YAI1; -. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 300 402 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 434 AA; 47583 MW; 07351C9C76D45204 CRC64; MANAKGSSAG AAGAGHADLG RAISHEQHQA FMMASVHRAA PGAANVHQQH FHQYPAGLIR APVPMPVHVP VSQTPYSAQI AVPPPQPLIP PPDHRLHSLP PTGCYQDYSP YGNTASLQHT AARGFADWGV HNNAIVSLAH ATSFANGSNN INSNGLLHQN LSPYTTHTWT TTYVQRPYNT AYAPATMNML QTPSFHSNNH EKESGAVFSN SFNMGPSGTP TSPFQLTSPS STNYTSTQIF EETNNLEDTS RVFGGGDNES NNSEEPDPTP AVEMEDLNQG NGHISFTNKK VNCQDYRMVL RKDLTNSDVG NIGRIVLPKK DAEPNLPILE DKDGLILEMD DFELPAVWKF KYRYWPNNKS RMYILETTGE FVKRHGLQAK DILIIYRNKR SGRYVARAVK AEHIPAPGCE CIKAGNPREE CGFSVSPSVK KIIT // ID C5YB36_SORBI Unreviewed; 518 AA. AC C5YB36; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 56. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_006G278900 {ECO:0000313|EMBL:EES13156.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13156.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES13156.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; EES13156.1; -; Genomic_DNA. DR RefSeq; XP_002448828.1; XM_002448783.1. DR EnsemblPlants; EES13156; EES13156; SORBI_006G278900. DR GeneID; 8076516; -. DR Gramene; EES13156; EES13156; SORBI_006G278900. DR KEGG; sbi:SORBI_06g033970; -. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5YB36; -. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 518 AA; 56285 MW; F46C7AE8009E100D CRC64; MAPQPPLAPA DGIVDRDVWL ACAVPLSRLP TVGAEVYYFP HGHAEQCPAH LPAPIPAPHL FPCIVTNLTL GADDKTNEVF AKISLSPGPH HAPAAASSLV GPDPTTTTKE SESDSPPHPQ PQELSYFTKE LTQSDANNGG GFSVPRYCAD HIFPTLDFDA DPPVQNLVMR DTRGNPWQFR HIYRGTPRRH LLTTGWSRFV NAKLLVAGDI VVFMRRTNGD LIVGLRRTPR YPLVFPGADA NANANQDQQP PPRNARARVP PQDVMEAARL AAEGRPFTVT YFPRQAAGEF VVPRDEVERA LATRWEPGTE VRMQVMEAED TRRTVWADGH VKALHQNIWR ALEIDWDDSS PLSLKLSRFV NAWQVQLVAY PPLPNTVRIC DPIAPLCPGD VSYPLIGPES QAMAMILGSP IPAGMQGARH TGPCAAPSES SAMLTTQLLF PLTNTDFQMP PRTSPSASSE ILDPEGASPP NNSVSMRPAE LPVQVKSIQL FGATITPHVV QSATNGDGMA DGNVGKDF // ID C5YEI6_SORBI Unreviewed; 420 AA. AC C5YEI6; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES12712.1}; GN ORFNames=SORBI_006G190400 {ECO:0000313|EMBL:EES12712.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES12712.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES12712.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; EES12712.1; -; Genomic_DNA. DR RefSeq; XP_002448384.1; XM_002448339.1. DR EnsemblPlants; EES12712; EES12712; SORBI_006G190400. DR GeneID; 8060436; -. DR Gramene; EES12712; EES12712; SORBI_006G190400. DR KEGG; sbi:SORBI_06g026370; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; C5YEI6; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 44747 MW; 96B1A3A791B6330B CRC64; MEFASSSSRF SKEEDEEEEG EEEDEEASPR EIPFMTAAAA TADTGPAAAS SSSPSAAGAS ASASGSAAAL RSGDGAGASG SGGGGGGSDD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAG EAARDRLFID WKRRADSRDP HRMPRLPLPM APVASPYGLG PWGGGAGGFF MPPAPPATLY EHHRFRQALD FRNINAAAAP ARQLLFFGSQ GMPPRASMPL QQQQPQPQPS LPPPPPPLHS IMMVQPGSPA VTHGLPMVLD SVPLVNSPTA AAKRVRLFGV NLDNPQQGSS AESSQDANAL SLRMPGWQRP GPLRFFESPQ RGAAESSAAS SPSSSSSSKR EAHSSLDLDL // ID C5YG32_SORBI Unreviewed; 311 AA. AC C5YG32; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES12866.2}; GN ORFNames=SORBI_006G217500 {ECO:0000313|EMBL:EES12866.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES12866.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES12866.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000765; EES12866.2; -; Genomic_DNA. DR RefSeq; XP_002448538.1; XM_002448493.1. DR EnsemblPlants; EES12866; EES12866; SORBI_006G217500. DR GeneID; 8074710; -. DR Gramene; EES12866; EES12866; SORBI_006G217500. DR KEGG; sbi:SORBI_06g028680; -. DR eggNOG; ENOG410IXEN; Eukaryota. DR eggNOG; ENOG410YYRA; LUCA. DR HOGENOM; HOG000241032; -. DR InParanoid; C5YG32; -. DR OrthoDB; EOG09360T0W; -. DR Proteomes; UP000000768; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 212 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 212 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 311 AA; 34768 MW; 4BE0A70678C68737 CRC64; MSVWAGPERS PCGADAITRE FGFEKVGMGQ LHPNKFSISE PLCRPCAPGS APQIPVLLFF LGTALHCSPP REKLLKEIQA RREMAEAVAV AVAVAYEAQR QRQVEANKRK LDELQLHRLS AAVREAAAAA KPSPAKKWKA RVPRDGAAAG VEPLRRSGRL ADLPEKPVYY QVRVKKLLKY NARVPLDAAE RSYAISKAEE LVQDLGSSFP IFIQPMIQSH VTRGFWLGLP TYFCRKHLPK SDETITLVVD EEGDESDTLY LAKKAGLSTG WKEFAIEHKL HDGDCLVFQL IEQTKFKVYI IRATSYFESE H // ID C5YHA5_SORBI Unreviewed; 253 AA. AC C5YHA5; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES13386.1}; GN ORFNames=SORBI_007G047500 {ECO:0000313|EMBL:EES13386.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13386.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES13386.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000766; EES13386.1; -; Genomic_DNA. DR RefSeq; XP_002443891.1; XM_002443846.1. DR UniGene; Sbi.21297; -. DR EnsemblPlants; EES13386; EES13386; SORBI_007G047500. DR GeneID; 8069623; -. DR Gramene; EES13386; EES13386; SORBI_007G047500. DR KEGG; sbi:SORBI_07g003880; -. DR eggNOG; ENOG410JS8F; Eukaryota. DR eggNOG; ENOG41116NU; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; C5YHA5; -. DR OMA; FNVECSG; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000000768; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 253 AA; 27305 MW; 3B41153210C60A3C CRC64; MYMDLSLGTL VQDTQEVQEE DQEDNLDQQR AIGQDLHQQG GGGGGEPSHG VEREHMFDKV LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFQDCGGA LWQFRYSYWG SSQSYVMTKG WSRFVRAARL AAGDTVTFSR GAGGGGRYFI EHRHCQRRRR RDVDISFGDA ATTMPPWPIA VGVQAMNGGA TMAVETASAA IAGTGHDSEV GPSAARSFRL FGFNVECSGD DAPAAPASAE VEYVDVDGDD DYS // ID C5YIB6_SORBI Unreviewed; 1095 AA. AC C5YIB6; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 59. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_007G203500 {ECO:0000313|EMBL:EES15359.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES15359.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES15359.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000766; EES15359.1; -; Genomic_DNA. DR RefSeq; XP_002445864.1; XM_002445819.1. DR UniGene; Sbi.16858; -. DR STRING; 4558.Sb07g027080.1; -. DR EnsemblPlants; EES15359; EES15359; SORBI_007G203500. DR GeneID; 8081337; -. DR Gramene; EES15359; EES15359; SORBI_007G203500. DR KEGG; sbi:SORBI_07g027080; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5YIB6; -. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000000768; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 977 1061 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1095 AA; 121249 MW; C18FF5CDAE74C2DF CRC64; MAAAAAPGTS SGGAGGDGGG GTKVNQELWY ACAGPLVTLP PAGSLVVYFP QGHSEQVAAS MRKDADAKIP SYPNLPSKLI CILRSVTMLA DPDTDEVYAR MTLQPVSNVT HCDKETLLAS DLALKQTRPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PHLDFSMQPP AQELQARDLH DAIWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDGRQQLLL GIRRANRQPV NLSSSVLSSD SMHIGILAAA AHAAANNSQF TVFYNPRASP SEFVIPFAKY QKAVYSNQLS LGMRFRMMFE TEESATRRYM GTITGISDMD PVRWKNSQWR NIQVAWDEAA PTERRTRVSL WEVEPVIAPF FIYPSPLFTA KRPRQPGITD DDSSEMDTLF KRTMPWFGEE IGKKDLSTQN SLVPGLSLVQ WMNMQQTSSL TSTVMQPELL NSLAGKPVQT LAAADLSRQI SFQPQFLQQN NIQFNTSLLP PQNQQTEQLA NVIATPNQLG SVIVPQKVVP NCSSEQKQNP VTQPLQVSQP MISMAQPQLV HTQLQQPQVI LQAQPQQPQV IVQAQLQQQQ PLVQNHTTIQ GGLQQIQLLQ QQHPHLQQQQ VQQSVQEQQQ IKIQPFQVPN DANMVTQLSD QMKIQLLKAL QPQQPLVMDQ QKMILDLQQQ AVNSQSTAQQ CSQVATQVVG LHSSSTIQYP TQQKTQPHKT IQDFPGNAVS IVKSENVTSM GARSLHVPGG VQSMKTDEVP SSSTSPSTNN NPVILRSTPS SSKNQCLSTA TKAPQSSVVL GCTLEQGMKP YESTQHTMAI PKMAEERPAT GQDYMNSTQI EYLDTSSSAT SVCLSQADGS LQQNFPPSFN QHQTLRETVP DSEFEVTDPG TNFLFGANID GHMEPLNEDA LLGNTFETEK YMDQMPGNGI SNYISSKDAQ QELSSSVISH SFGVADIAFN SIDSSINDIP FLNRNSRAPG PAHQRIRTYT KVHKRGAVGR SIDINRYSGY DELKHDIARM FGIEGQLSDQ NRVCWKLVYE DHEKDVLLVG DDPWEDFVNC VRCIRILSPQ EERQMRLASD YGDSFLGNQA CSSSDGVHPW RVTGD // ID C5YJ24_SORBI Unreviewed; 279 AA. AC C5YJ24; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 49. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES14747.1}; GN ORFNames=SORBI_007G083900 {ECO:0000313|EMBL:EES14747.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES14747.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES14747.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000766; EES14747.1; -; Genomic_DNA. DR RefSeq; XP_002445252.1; XM_002445207.1. DR EnsemblPlants; EES14747; EES14747; SORBI_007G083900. DR GeneID; 8086081; -. DR Gramene; EES14747; EES14747; SORBI_007G083900. DR KEGG; sbi:SORBI_07g006880; -. DR eggNOG; ENOG410JSU0; Eukaryota. DR eggNOG; ENOG41108H5; LUCA. DR HOGENOM; HOG000191267; -. DR InParanoid; C5YJ24; -. DR OrthoDB; EOG09360NOS; -. DR Proteomes; UP000000768; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 31734 MW; AD0D61CB44C930D6 CRC64; MAFSATTISR EMEVQMGKVP PCLNPFQMVN PPLPSRYVSN WSSKPTLVFQ SSMSNGHGAL DLCEGRQRGR KVVDVEYLFS KILTASDVGK LNRLLIPRQC AEECFPKISK TKSAEDDEDF LNFEDMSTGL IWCFRFCLWN NSKTYVLTKG WHFFIKEKNL KKGDVLSFYR GVGKTRSTDH MFIHIKPHTG TMSLPHHVPC PIFSPSRLMI DDWDHENLGF STCHGIVPAS MPLSIGFGEL MPPTNLMPQQ TTFLESTSLE IVRVEKRLRL FGVDIHPFP // ID C5YLC1_SORBI Unreviewed; 371 AA. AC C5YLC1; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES14344.2}; GN ORFNames=SORBI_007G000400 {ECO:0000313|EMBL:EES14344.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES14344.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES14344.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000766; EES14344.2; -; Genomic_DNA. DR RefSeq; XP_002444849.1; XM_002444804.1. DR UniGene; Sbi.14098; -. DR STRING; 4558.Sb07g000220.1; -. DR EnsemblPlants; EES14344; EES14344; SORBI_007G000400. DR GeneID; 8064312; -. DR Gramene; EES14344; EES14344; SORBI_007G000400. DR KEGG; sbi:SORBI_07g000220; -. DR eggNOG; ENOG410JDZ5; Eukaryota. DR eggNOG; ENOG41116M3; LUCA. DR HOGENOM; HOG000070867; -. DR InParanoid; C5YLC1; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000000768; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 264 364 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 371 AA; 40081 MW; B7162099D7EFDADA CRC64; MGQMGGPDGD GDGGGGGPHH QYHYQALLAA VQNPSQGLHP FPLPFHLPLH AGAPAAGPVV ADADAASTHG ANANAAPHSQ PPRGFTDWSP SNSAFAAVAA QPAPATTNTP FHYNVPQSYA LWTHYMLNKN VSCSTYPTQH EENPHPLRQT HIPEENPHPL RHSHIPDKDS GCASSLGFDS FTTMSLGPNI CAHMTPMEGS ISAKEPENSQ DLPAVVRSSD EMDTRNSGEV HRDTAGTLPE SKQSHESCAS MSNKFNSGEY QVILRKELTK SDVANSGRIV LPKKDAEAGL PPLVQGDPLI LQMDDMVLPI IWKFKYRFWP NNKSRMYILE AAGEFVKTHG LQAGDALIIY KNSVPGKFII RGEKSIQQTN P // ID C5YNM8_SORBI Unreviewed; 839 AA. AC C5YNM8; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 60. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_008G096000 {ECO:0000313|EMBL:EES17013.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES17013.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES17013.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; EES17013.1; -; Genomic_DNA. DR RefSeq; XP_002443175.1; XM_002443130.1. DR UniGene; Sbi.10263; -. DR STRING; 4558.Sb08g014320.1; -. DR EnsemblPlants; EES17013; EES17013; SORBI_008G096000. DR GeneID; 8064058; -. DR Gramene; EES17013; EES17013; SORBI_008G096000. DR KEGG; sbi:SORBI_08g014320; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5YNM8; -. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 710 794 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 839 AA; 92454 MW; 92CCC87505105B95 CRC64; MAAAAPAAGG GGGAEAGCGG GGGKDPLFVE LWKACAGPLS SVPPLGEKVY YFPQGHIEQV EASTNQIAEQ QGTPLYNLPW KIPCKLMNIE LKAEPDTDEV YAQLTLLPDK KQDENTSTTV ENEEAEEEVV PHAPPTNEGP RIHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSQHP PNQELVAKDL HGIEWRFRHI FRGQPRRHLL QSGWSVFVSA KRLVAGDAFI FLRGENGELR VGVRRALRHQ TTIPSSVISS HSMHLGVLAT AWHAVNTGSM FTVYYKPRTS PAEFVVSRDR YYESLKRNYS IGMRFKMRFE GEEAAEQRFT GTIVGIGASD PSGWADSKWR SLKVRWDEAS SVPRPERVSP WQIEPAISPS PVNPLPVRFK RSRSSVNASP SDVPTVSREV ASKVMAESQQ SNLPRALHNQ GRTQLTGRYH DSSDVKTAQD LTMWSSGTEQ QRNNIAAQTK RSLEGWTQSR TPEGYNQLFS AFQPLKDTHN PLCTFPSQIS GTRSNTWDTA DARYPAQQAN HNMLHGTWPF MPHSSGFRTN QQNYLVMPEA AKFTGKSAFT SLQGHGTDQC STGWFGHIES SSRTDHASSS SIRPQPLVIG NDVQKTKGTS FKLFGIPLGS PEKSEPLVSP PSVAYDGKLQ TSPSEKGNQL DIVGVDNCSD PSKTVKPFDG PQSDSITENN QPCPEATQNI QNKVQSSSTR SCKKVHKQGS ALGRSIDLTK FTCYDELIAE LDQMFDFDGE LKNPCKNWLV VYTDNEGDIM LVGDDPWNEF CDMVHKIFIY TREEVERMNP GALNSRSEDS LSDSQGRGLA SKEPPRGGPS TSTPNSESC // ID C5YQW4_SORBI Unreviewed; 361 AA. AC C5YQW4; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 02-NOV-2016, sequence version 2. DT 07-JUN-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES17302.2}; GN ORFNames=SORBI_008G149300 {ECO:0000313|EMBL:EES17302.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES17302.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES17302.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; EES17302.2; -; Genomic_DNA. DR RefSeq; XP_002443464.1; XM_002443419.1. DR STRING; 4558.Sb08g019840.1; -. DR EnsemblPlants; EES17302; EES17302; SORBI_008G149300. DR GeneID; 8076615; -. DR Gramene; EES17302; EES17302; SORBI_008G149300. DR KEGG; sbi:SORBI_08g019840; -. DR eggNOG; ENOG410JSU2; Eukaryota. DR eggNOG; COG0515; LUCA. DR HOGENOM; HOG000116553; -. DR InParanoid; C5YQW4; -. DR KO; K04733; -. DR OrthoDB; EOG093606RC; -. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004674; F:protein serine/threonine kinase activity; IBA:GO_Central. DR GO; GO:0007166; P:cell surface receptor signaling pathway; IBA:GO_Central. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 353 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 353 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41884 MW; 089B8626AEDB8F74 CRC64; MPKLQQMVEK ACESCREWQE HYYWDHMDVS KIRFFRRMTG DFAHRISIPE KFAKKFRGQI TEEVQLKSPS SAETWHISVE KCDDVLFFIS GWEDFVKAHE LQENDLLLFT CCGKSSFEVL VFEASGCEKV SSLFDNGIGS DVCKQFNDIV GKHGEHHSVT VSDSEDAIAP SQLVGSPHNA SPSKEQSGKA RPSEYESPKD SNFIVKHVAT GEEDSDDGYA KSNYYYSKFA NRLRDEEKEQ IIGLASIRPN NPVFVAVLMK NHVQRRNNHL TIPIKFAADH LVERAHDIIL RRPNRKEKWL VSYYYSCRTR CFHNLRLFKF MRESKLREGD ICIFELMKDK RRVTMTVHAI RKANDRFILV G // ID C5YQX2_SORBI Unreviewed; 354 AA. AC C5YQX2; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES16265.1}; GN ORFNames=SORBI_008G149100 {ECO:0000313|EMBL:EES16265.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES16265.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES16265.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; EES16265.1; -; Genomic_DNA. DR RefSeq; XP_002442427.1; XM_002442382.1. DR EnsemblPlants; EES16265; EES16265; SORBI_008G149100. DR GeneID; 8076618; -. DR Gramene; EES16265; EES16265; SORBI_008G149100. DR KEGG; sbi:SORBI_08g019900; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000244154; -. DR InParanoid; C5YQX2; -. DR OMA; HHSEMRC; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 41379 MW; A48A740D62F4786C CRC64; MVEKGCERCK EWQEHYYWEH MDVSKIRFFK RMTGDFAHRT SIPEKFVKKF NGQITEGVDM KTPSGETWHV GVAKNQDELF FVSGWEDFVK AHELKENDLL LFTCRGSSSF QVVIFEGSGC EKVSSVFGNR FGPNMWRHFN DMEGKEAECY SQSDSEDTAT PPHQLVQSPH NASTSKKSIC KRKQPESPNS NSDYDVKQQG TREEDSDSDN EYTDFKYYYS RTANRLSNDE KSKIISLASI QPDNPAFITV LQMTNVRPRN NSLTIPRQFA ADHLEERSQE IILRRPNRKD KWYVRYYYTT AIRSLKSYHW SKFVRENKLR EGDICVFELM KGAKRVTMSV HVIKKVENRF VLLG // ID C5YRZ9_SORBI Unreviewed; 895 AA. AC C5YRZ9; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 58. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_008G169400 {ECO:0000313|EMBL:EES17392.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES17392.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES17392.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; EES17392.1; -; Genomic_DNA. DR RefSeq; XP_002443554.1; XM_002443509.1. DR UniGene; Sbi.14947; -. DR STRING; 4558.Sb08g021460.1; -. DR EnsemblPlants; EES17392; EES17392; SORBI_008G169400. DR GeneID; 8070167; -. DR Gramene; EES17392; EES17392; SORBI_008G169400. DR KEGG; sbi:SORBI_08g021460; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5YRZ9; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 762 846 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 895 AA; 98610 MW; 57C2A82316C06E07 CRC64; MNLSPPKMSE PSPESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT LQPLSPEEQK EPFLPIELGA GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELV ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGLGA SPWLQPRIDY PLMGLKPDTY QQMAAAALEE IRAGDHLKQT SSLLPVQQTQ NLNGGLDPLY GNPVLQQMQF QSQQSPLQAV QQGYGQNASE SGFLQNQLQQ LQLQKQQEPP QQQQQQTQVL QQQSHQEMQQ HLSASCHDIA NVASGVSESG SACQSQSSLL SGSSFYQQNL FDGNNGPDLH LHNSFHNFSS QESSNLLNLP RSGQLMASEG WPSKRLAVES LAGHELQPVQ LKLEKVNHQS NVSHVSGTLP PLSARDGSSA QACGTNVQSN LLSSSFAIHD GLSTVRSGGV GSGTDAITIA SLRYGDMNLL PENSIATSSC LGESGTFNSL DDVCGVNPSQ GGTFVKVYKS GSLGRSLDIT RFSSYYELRS ELERLFGLEG QLEDPVRSGW QLVFVDREND ILLVGDDPWQ EFVNSVWCIK ILSPQDVQQM VRGGGDLLSA PGARMLQSSV CDDYSAGHDM QNLTGIIAPV VPLDY // ID C5YT37_SORBI Unreviewed; 297 AA. AC C5YT37; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 52. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES17508.1}; GN ORFNames=SORBI_008G191800 {ECO:0000313|EMBL:EES17508.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES17508.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES17508.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000767; EES17508.1; -; Genomic_DNA. DR RefSeq; XP_002443670.1; XM_002443625.1. DR EnsemblPlants; EES17508; EES17508; SORBI_008G191800. DR GeneID; 8065263; -. DR Gramene; EES17508; EES17508; SORBI_008G191800. DR KEGG; sbi:SORBI_08g023200; -. DR eggNOG; ENOG410JPPK; Eukaryota. DR eggNOG; ENOG41118R3; LUCA. DR HOGENOM; HOG000192150; -. DR InParanoid; C5YT37; -. DR OMA; RFDASGC; -. DR OrthoDB; EOG09360PZR; -. DR Proteomes; UP000000768; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 31729 MW; B762A3CEBA540F9D CRC64; MASHGGGGGG PHKFFKVLLP GSFEISLSLP PKFAASLGVL RSWRAAAKLR DHTGRSWDVE LRRDAAHRVC FTGGGWRGFV SANAVSAGQL LVFEHRGGFD FTVDRFDASG CCCEDGGGPI NKVVDEHMTT RGTEAAADKE SGNSRRRPEA APAPCTSGVK RRRRSPSTGT GTTVVSGGDD DETLCCRIER PYQLRILALS KSFCDRVGWT SSRDVVLCAA GDGVSGSRKE EKRWQVSVKM SAKNAMICAG WTEFAQDNRL AVSDACIFVP LPAPASGSDD VLQVHLLRGT PVAASWT // ID C5YVJ4_SORBI Unreviewed; 739 AA. AC C5YVJ4; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 53. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_009G231800 {ECO:0000313|EMBL:EES18676.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES18676.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES18676.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; EES18676.1; -; Genomic_DNA. DR RefSeq; XP_002440246.1; XM_002440201.1. DR UniGene; Sbi.12623; -. DR STRING; 4558.Sb09g028450.1; -. DR EnsemblPlants; EES18676; EES18676; SORBI_009G231800. DR GeneID; 8074594; -. DR Gramene; EES18676; EES18676; SORBI_009G231800. DR KEGG; sbi:SORBI_09g028450; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5YVJ4; -. DR KO; K14486; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 171 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 171 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 739 AA; 80854 MW; C11E5023A2997102 CRC64; MAGIDLNDTV EEDEEEAEPG NPACSQQSRT SSAATPPPPP LTPLLQPRPG AAVCLELWHA CAGPVAPLPR KGTVVVYLPQ GHLEHLGDAA AAAAGGAPAP AALPPHVFCR VVDVTLHADA STDEVYAQLA LVAENEDVAR RLRGGSEDGS AGDGDDGEAV KQRFSRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE LVAKDLHGTE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG DDGELRLGVR RAAQLKNGSA FPALYNQCSN LGSLANVAHA VATKSVFHIY YNPRLSQSEF IIPYSKFMKS FSQQFSAGLR FKMRYESDDA SERRCTGVIA GIGDADPMWR GSKWKCLMVR WDDDVDFRRP NRISPWEIEL TSSVSGSHLS APNAKRLKPC LPPDYLVPNG SGCPDFAESA QFHKVLQGQE LLGYRTRDNA AVATSQPCEA RNMQYIDERS CSNNVSNSIP GVPRIGVRTP LGNPRFSYHC SGFGESPRFQ KVLQGQEVFQ PYRGTLVDPS LRNSGFHQQD GSHVPTQANK WHPQLHGCAF RGTQAPAIPS QSSSPPSVLM FQRDNPKMSP FEFGHCHMDK NEDMRAMFGH AGGIGRTEQT MMLQAHNVSG GMGNRDVTVE KFQPTVAVGR DGSDNREVTK NSCKIFGISL TEKVPAIKEK DCGDTNYPSP FLSLKQHVPK SLGNSCATIH EQRPVVGRVI DVSTVDMMI // ID C5YVQ7_SORBI Unreviewed; 245 AA. AC C5YVQ7; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES17970.1}; GN ORFNames=SORBI_009G093000 {ECO:0000313|EMBL:EES17970.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES17970.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES17970.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; EES17970.1; -; Genomic_DNA. DR RefSeq; XP_002439540.1; XM_002439495.1. DR EnsemblPlants; EES17970; EES17970; SORBI_009G093000. DR GeneID; 8058335; -. DR Gramene; EES17970; EES17970; SORBI_009G093000. DR KEGG; sbi:SORBI_09g011040; -. DR HOGENOM; HOG000241968; -. DR InParanoid; C5YVQ7; -. DR OMA; CRVELEM; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 117 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 117 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 27158 MW; CB293E62B64FBDBE CRC64; MVKQFKVLLH TSSSHKLRIS NELAGCFDTG EGEGAPEPTA IVVSPFGTVW PVKVGQDGDG AFLGRGWAEF LPVHGVGLGW FVVLWHEGGG TLTVKMFDTS LCIKEFIAPA AEAAKRLPAR FVKGYITKEW QNSQTAIIVS PLGKCWQFEF KNDQSGIFFT GRWSQFLDFH GISKGEVLLL RYEGNMVSKF KAFGLNGCQK VFKNQNAEIK QNTEKQQETP SPIRKCNSSD EKSKNQNAGI HLSEK // ID C5YZU6_SORBI Unreviewed; 280 AA. AC C5YZU6; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 55. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES19705.1}; GN ORFNames=SORBI_009G175800 {ECO:0000313|EMBL:EES19705.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES19705.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES19705.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; EES19705.1; -; Genomic_DNA. DR RefSeq; XP_002441275.1; XM_002441230.1. DR EnsemblPlants; EES19705; EES19705; SORBI_009G175800. DR GeneID; 8077012; -. DR Gramene; EES19705; EES19705; SORBI_009G175800. DR KEGG; sbi:SORBI_09g023630; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; C5YZU6; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 144 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 31522 MW; 77E13E9C0FD1DF76 CRC64; MAAKASSAAA AASGAAYEEQ RRKRVLENLK HLEDLGIKEM SKSLLQAARL QKQNKAGVRA SPKARKKFDA TEVRRSSRAK TTVSYKDDFA ELDTFLRGIR RGGGRNTEHG REYTGRISSY QQQQRAFRKA EKLQDSLDPN NPSFVKTMVR SHVSSCFWLG LPTSFCKDNL PSKEFRMVLE DEEGVEFDAV YIGNRTGLSG GWRGFAMHHN LEEGDSLVFE LAEHDRFKIY IIKAIDDDVK EAEPDDKNAS GGTKEEPDQE ESPVAEPPKG AKRRKLRGRR // ID C5Z0X8_SORBI Unreviewed; 575 AA. AC C5Z0X8; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_009G196900 {ECO:0000313|EMBL:EES18504.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES18504.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES18504.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; EES18504.1; -; Genomic_DNA. DR RefSeq; XP_002440074.1; XM_002440029.1. DR UniGene; Sbi.21074; -. DR STRING; 4558.Sb09g025500.1; -. DR EnsemblPlants; EES18504; EES18504; SORBI_009G196900. DR GeneID; 8082971; -. DR Gramene; EES18504; EES18504; SORBI_009G196900. DR KEGG; sbi:SORBI_09g025500; -. DR eggNOG; ENOG410JSIU; Eukaryota. DR eggNOG; ENOG41108RS; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5Z0X8; -. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 575 AA; 63170 MW; 6133D23F534FBE2B CRC64; MFGRNIHDGE TEEKDGEKED GDGEKLTSHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYEQLRPSQE LIAKDLHGMK WRFRHIYRGQ PRRHLLTTGW SSFINKKKLV SGDAVLFLRG SDGELRLGVR RAVQLKNEAL LEAVNCTDSK LLMLSAVASS LDNRSIFHIC FNPRIGASEF IVPYCKFLKG LNYPFSIGTR FKVGCKNEDA NERSFGLISG ISEVDPIRWP GSKWKSLLVK WDGDTKYSHQ NRVSPWDIER VGSSVSVTHC LSSCVSKRMK LCFPQGNLDA PILDGNGRPD SVGTEGFHQV LQGQELVRVH GAACSHSSDT PRCQGSYGRR FSADVWNCKM NDGHLNTTGF AYQPLGFSES VKFSEVLQGQ EMSQVAAPSF MRDAFSAGTQ NGRVRSFDYV QRSAATQGYA LQQFNLPATE VHSPSSVLMF NQTMVPQPEL DGLTNREEAY GSGYSSIAIQ REAEPWPSTQ QQRVRENGSE PLDTTEASAP ARIAKSGSVD RGVGGSSCKL FGFSLTEKIL GTEGVGGKEG NYEADRQTPR VLDLLGHGHS TPGALHALCA APLGI // ID C5Z103_SORBI Unreviewed; 534 AA. AC C5Z103; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES17776.1}; GN ORFNames=SORBI_009G057600 {ECO:0000313|EMBL:EES17776.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES17776.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EES17776.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000768; EES17776.1; -; Genomic_DNA. DR RefSeq; XP_002439346.1; XM_002439301.1. DR EnsemblPlants; EES17776; EES17776; SORBI_009G057600. DR GeneID; 8071217; -. DR Gramene; EES17776; EES17776; SORBI_009G057600. DR KEGG; sbi:SORBI_09g004870; -. DR eggNOG; ENOG410JWI1; Eukaryota. DR eggNOG; ENOG41104WR; LUCA. DR InParanoid; C5Z103; -. DR OMA; MASCFQP; -. DR OrthoDB; EOG093607P2; -. DR Proteomes; UP000000768; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 430 534 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 430 534 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 534 AA; 60549 MW; 45E756488D0D6A55 CRC64; MGSTGGNCKR WWDHQDRDCK NNEKMRFHVV ADEDSRSFMR IPQEFGSYLR KIISDTIKLN APNGCTYDIA VCREMGEIVL RSGWDVFADA HNLEQNDYLV FKFCGSSSFK VHIYSSCGGS QKITSCVNPD PEILEDVPPC TTSDHHVPNG NEIPHPGHVQ TPACFEYFTS GGSRLTKAQD KKVLEMARTI KSEIPVYVAV MNKSNVDLNG CSIRIPSILM EDVTEEVFKA TVKLEASDAN LYSVSATRQC NDEIVLQSGW DTFVVAHHVQ ERDLIIFRHK RNSRLEVFIL NPSGHQKNTS WFGMQDVSNT QQMCDDSVEI VEPPHKKVGI IDVSSSSDDE KNVAAYSAKS ARRQKQQLGH FAKTRRMAST SCPSIKSEHD RFLLNSNNCE GPTRPPYIIS NKVTLSRVQE KMVLEKVQAI RSRFPIYVAV INRSSAAERN NRSRMIFSNE YSRRCLPSAT HDLTLQLEGC WGKQWHTLLH VQGGDSRSRG VRRISRGWAQ FVRDNRLVLG DICLFEMEKA TRCLRMKVHL IPKA // ID C5Z2Q1_SORBI Unreviewed; 193 AA. AC C5Z2Q1; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER89060.1}; GN ORFNames=SORBI_3010G008300 {ECO:0000313|EMBL:EER89060.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER89060.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER89060.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). RN [2] {ECO:0000313|EMBL:EER89060.1} RP NUCLEOTIDE SEQUENCE. RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., RA Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., RA Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., RA Bharti A., Chapman J., Feltus F., Gowik U., Grigoriev I., Lyons E., RA Maher C., Martis M., Narechania A., Otillar R., Penning B., RA Salamov A., Wang Y., Zhang L., Carpita N., Freeling M., Gingle A., RA Hash C., Keller B., Klein P., Kresovich S., Mccann M., Ming R., RA Peterson D., Rahman M., Ware D., Westhoff P., Mayer K., Messing J., RA Sims D., Jenkins J., Shu S., Rokhsar D.; RT "WGS assembly of Sorghum bicolor."; RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; EER89060.1; -; Genomic_DNA. DR EMBL; CM000769; OQU75694.1; -; Genomic_DNA. DR RefSeq; XP_002437693.1; XM_002437648.1. DR EnsemblPlants; EER89060; EER89060; SORBI_010G008300. DR GeneID; 8066888; -. DR Gramene; EER89060; EER89060; SORBI_010G008300. DR KEGG; sbi:SORBI_10g000950; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR HOGENOM; HOG000240752; -. DR InParanoid; C5Z2Q1; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 20946 MW; 073DD051C538356B CRC64; MEIPGCVSSI NPKVEPCEDE EPPLPPPFQA SSDEWEVTPL SGDNPFFTSV MCKSQVQNPF QLVIPVRFHR HLPETRAPAV LMCRGRSWTV SYCGVGKWKR LQGAWRDFAR DNGLRLGDAC VFELVVPTAA GAGTEAAAAA ASERDGNDSS GSSKEKEGKT MEVVFRVQVL RSGLPEEIAS RGATSDDPLV ILD // ID C5Z7U5_SORBI Unreviewed; 919 AA. AC C5Z7U5; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3010G229000 {ECO:0000313|EMBL:EER90218.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER90218.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER90218.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; EER90218.1; -; Genomic_DNA. DR RefSeq; XP_002438851.1; XM_002438806.1. DR STRING; 4558.Sb10g027220.1; -. DR EnsemblPlants; EER90218; EER90218; SORBI_010G229000. DR GeneID; 8061613; -. DR Gramene; EER90218; EER90218; SORBI_010G229000. DR KEGG; sbi:SORBI_10g027220; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5Z7U5; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 787 871 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 919 AA; 101692 MW; FAA9421A79B8BB1C CRC64; MRLSSSSGSV IPAAQPGSPE AVEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEME SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPQELKDPYL PAELGSANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PCQELMAKDL HGNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRANRPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI SVGMRFRMLF ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPTGLP SLHGGKDDDL ANSLMWLRDA ANPGFQSLNF GGLGMNPWMQ PRLDASLLGL QPDMYQAMAT AAFQDPTKQV SSPTMLQFQQ PQNIAGRATP LLSSQILQQS HPQFQQQQYL QNISESTIQA QGQSEFLKQQ IQRSQSFNEQ KPQLQPQQQQ QESQQQQQQQ SQCLQVPQHQ QMQQHNMTNY QSVSNALSAF SQLSSASQSS PVSLQTILPF SQAQSFTDTN VSSLSPSNTN TMQNTLRPFS SEAVSHLSMP RPTAIPVSDP WSSKRVAVES LLPSRPQVSS QMEQLDSAPA SIPHSSALAP LPGRGCLVDQ DVNSDPQNHV LFGVSIDSQS LLMQGGIPGL QNGNDSTAIP YSTSNFLSPS QNDFPLDHTL NSPGCLDDSG YVPPCSDNSD QVNRPPATFV KVYKSGTYGR SLDITRFSSY HELRRELGRL FGLEGQLEDP LRSGWQLVFV DREEDVLLVG DDPWQEFVST VSCIKILSPQ EVQQMGKQGL ELLSSGPARR LGSSCDDYVS RQESRSLSTG IASVGSVEF // ID C5Z8A5_SORBI Unreviewed; 709 AA. AC C5Z8A5; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 01-SEP-2009, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3010G236300 {ECO:0000313|EMBL:EER88840.1}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER88840.1, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER88840.1, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; EER88840.1; -; Genomic_DNA. DR RefSeq; XP_002437473.1; XM_002437428.1. DR STRING; 4558.Sb10g027790.1; -. DR EnsemblPlants; EER88840; EER88840; SORBI_010G236300. DR GeneID; 8064947; -. DR Gramene; EER88840; EER88840; SORBI_010G236300. DR KEGG; sbi:SORBI_10g027790; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; C5Z8A5; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 626 707 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 76700 MW; 9B432F377C049023 CRC64; MITFVDSAAM ERERESDRCL DPQLWHACAG GMVQMPPVHS KVYYFPQGHA EHAQGPVVDL PAGRVPALVL CRVAAVRFMA DPDTDEVFAK IRLAPVRPNE PGYAADADDA IGAAAAGGGA QEDKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGIGGPEFL HHHQPPPPPG GGGYAGFSMF LRGGEEDGSK MMATGAATRG NKVRVRVRPE EVVEAANLAV SGQPFEVVYY PRASTPEFCV KAGAVRAAMR TQWCAGMRFK MAFETEDSSR ISWFMGTVSA VQVADPIRWP NSPWRLLQVA WDEPDLLQNV KRVSPWLVEL VSNMPAIHHL TPFSPPPRKK LCVPLYPELP LEGHQFPAPM FHGSPLGRGV GPMCYFPDGT PAGIQGARHA QFGISLSDLH LDKLQSSLSP HGLHHHQLDG HGVQPRIAAG LIIGHPAAAR DDISCLLTIG TTPQNRKPSS DVKKAAAAAP QLMLFGKPIL TEQQISLGNV AGFPAPKKSP SDDVAERTVS NSDVSSPGSN HGGSSRSSGG APSCQDNKVP DLGLETGHCK VFMQSEDVGR TLDLSAVGSY EELYQRLADM FGIDKTELMS HVFYRDDASG ALKHTGDKPF SEFTKTARRL TILTDAEQR // ID C5Z987_SORBI Unreviewed; 1159 AA. AC C5Z987; DT 01-SEP-2009, integrated into UniProtKB/TrEMBL. DT 05-OCT-2016, sequence version 2. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SORBI_3010G253300 {ECO:0000313|EMBL:EER90336.2}; OS Sorghum bicolor (Sorghum) (Sorghum vulgare). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; OC Sorghum. OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER90336.2, ECO:0000313|Proteomes:UP000000768}; RN [1] {ECO:0000313|EMBL:EER90336.2, ECO:0000313|Proteomes:UP000000768} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768}; RX PubMed=19189423; DOI=10.1038/nature07723; RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., RA Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., RA Chapman J., Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., RA Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., RA Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., RA Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., RA McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman, Ware D., RA Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.; RT "The Sorghum bicolor genome and the diversification of grasses."; RL Nature 457:551-556(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000769; EER90336.2; -; Genomic_DNA. DR RefSeq; XP_002438969.1; XM_002438924.1. DR STRING; 4558.Sb10g029175.1; -. DR EnsemblPlants; EER90336; EER90336; SORBI_010G253300. DR GeneID; 8063842; -. DR Gramene; EER90336; EER90336; SORBI_010G253300. DR KEGG; sbi:SORBI_10g029175; -. DR eggNOG; KOG0497; Eukaryota. DR eggNOG; COG1657; LUCA. DR HOGENOM; HOG000234317; -. DR InParanoid; C5Z987; -. DR OrthoDB; EOG0936031Q; -. DR Proteomes; UP000000768; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000768}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000768}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1026 1110 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 612 639 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1159 AA; 128163 MW; CB432645841F9066 CRC64; MIKQHQQQQQ APPPQPMPAS SAAPPAPAVP AAATAPSGCE GEKKAPPINS ELWHACAGPL VSLPPAGSLV VYFPQGHSEQ VAASMQKDVD GHVPSYPNLP SKLICLLHNV TLHADPETDE VYAQMTLLPV TSYGKEALQL SELALKQPRP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQEIQARDL HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVI FVRDERQQLL LGIRRANRQP TNISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPRAS PTEFVVPFAK YQKALYGNQI SLGMRFRMMF ETEELGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES AAGERRNRVS IWEIEPVAAP FFICPPPFFG SKRPRQLDDE SSEMENLLKR AMPWLGEEIC IKDPQTQNTV MPGLSLVQWM NMNMQQNSSF GNSAMQSEYL RSLSNPNMQN LGAADLSRQL NMQNQILQQN SIQFSSPKLP QQMQPVNELS KASLPLNQLG VGTKQQEQTQ DPSSLQRQQQ SMNQLLPLSQ SQTNLVQAQV LIQNQMQQQQ QPPSMTQNLQ PAASQSLLLP HQQQQQHQQQ KLVHQQQQLL LQQQQLQQQQ QNQQQLNKMA AQVPNLAPHQ LQLSDQQLQL QLLQKLQQQH QSLLSQPGVT LAQLPLIQEQ QKLIIDMQQQ LSNSQSLSQQ QIMTQQSTKV PSQATPPPPT GQQESQQKLP QKHVGFTDTS HTAIPPTTSV NAISAVGSPL MATGATHSVL TDEIPSCSTS PSTANGNHLL QPVLGRNQQC SVINYEKLPQ STAPMSIPSS LEAVTATPRS IKELPKLNSN VKQSVMASKL PNTGPVPQNL ANNAPPTDYL ETASSATSVW LSQADGLLHH GFPMSNFNQQ QMFKDVAPET DIHGADPSNN TLFGINGDGQ LGFPMGADGF LSNGIDASKY QNHISADIDG NYRIPKDGQQ EISSSMVSQS FGASDMAFNS IDSGMNDGGF VNRTSWPPAP PLKRMRTFTK VYKRGAVGRS IDISQFNGYD ELKHALARMF SMEGQLEERQ RIGWKLVYKD HEDDILLLGD DPWEEFVNCV KCIRILSPQE VQQMSLDGDL GNNILPNQAC SSSDGGNAWR ARCDQNSGNP STGSYDQFE // ID C7J026_ORYSJ Unreviewed; 111 AA. AC C7J026; DT 13-OCT-2009, integrated into UniProtKB/TrEMBL. DT 13-OCT-2009, sequence version 1. DT 07-JUN-2017, entry version 53. DE SubName: Full=Os03g0620500 protein {ECO:0000313|EMBL:BAH92274.1}; GN Name=Os03g0620500 {ECO:0000313|EMBL:BAH92274.1}; GN ORFNames=OSNPB_030620500 {ECO:0000313|EMBL:BAS85304.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAH92274.1} RP NUCLEOTIDE SEQUENCE. RG IRGSP(International Rice Genome Sequencing Project); RT "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 3."; RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:BAH92274.1} RP NUCLEOTIDE SEQUENCE. RG The Rice Annotation Project (RAP); RT "The Second Rice Annotation Project Meeting (RAP2)."; RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:BAH92274.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=16381971; DOI=10.1093/nar/gkj094; RA Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., RA Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., RA Itoh T., Gojobori T., Sasaki T.; RT "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa RT ssp. japonica genome information."; RL Nucleic Acids Res. 34:D741-D744(2006). RN [5] {ECO:0000313|EMBL:BAH92274.1} RP NUCLEOTIDE SEQUENCE. RG The Rice Annotation Project (RAP); RA Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., RA Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., RA Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., RA Harada E., Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., RA Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., RA Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., RA Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., RA Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., RA Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., RA Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., RA Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., RA Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., RA Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., RA Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., RA Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., RA Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., RA Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.; RT "Curated Genome Annotation of Oryza sativa ssp. japonica and RT Comparative Genome Analysis with Arabidopsis thaliana."; RL Genome Res. 17:175-183(2007). RN [6] {ECO:0000313|EMBL:BAH92274.1} RP NUCLEOTIDE SEQUENCE. RG The Rice Annotation Project (RAP); RA Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., RA Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., RA Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H., RA Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., RA Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., RA Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., RA Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., RA Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., RA Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., RA Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., RA Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., RA Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., RA Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., RA Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., RA Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., RA Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., RA Piegu B., Panaud O., Echeverria M.; RT "The Rice Annotation Project Database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [7] {ECO:0000313|EMBL:BAS85304.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=23299411; DOI=10.1093/pcp/pcs183; RA Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., RA Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., RA Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.; RT "Rice Annotation Project Database (RAP-DB): an integrative and RT interactive database for rice genomics."; RL Plant Cell Physiol. 54:E6-E6(2013). RN [8] {ECO:0000313|EMBL:BAS85304.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [9] {ECO:0000313|EMBL:BAS85304.1} RP NUCLEOTIDE SEQUENCE. RA Millard Andrew; RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP008209; BAH92274.1; -; Genomic_DNA. DR EMBL; AP014959; BAS85304.1; -; Genomic_DNA. DR EnsemblPlants; OS03T0620500-01; OS03T0620500-01; OS03G0620500. DR Gramene; OS03T0620500-01; OS03T0620500-01; OS03G0620500. DR OMA; MDRNSSH; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 111 AA; 12875 MW; 53FE9693D6EF72B3 CRC64; MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLDQ FGGKISRTVE LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIKNSR F // ID C7J3Z7_ORYSJ Unreviewed; 309 AA. AC C7J3Z7; DT 13-OCT-2009, integrated into UniProtKB/TrEMBL. DT 13-OCT-2009, sequence version 1. DT 05-JUL-2017, entry version 52. DE SubName: Full=Os06g0196700 protein {ECO:0000313|EMBL:BAH93379.1}; GN Name=Os06g0196700 {ECO:0000313|EMBL:BAS96618.1}; GN OrderedLocusNames=Os06g0196700 {ECO:0000313|EMBL:BAH93379.1}; GN ORFNames=OSNPB_060196700 {ECO:0000313|EMBL:BAS96618.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAH93379.1}; RN [1] {ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] {ECO:0000313|EMBL:BAH93379.1} RP NUCLEOTIDE SEQUENCE. RG IRGSP(International Rice Genome Sequencing Project); RT "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6."; RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:BAH93379.1} RP NUCLEOTIDE SEQUENCE. RG The Rice Annotation Project (RAP); RT "The Second Rice Annotation Project Meeting (RAP2)."; RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:BAH93379.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=16381971; DOI=10.1093/nar/gkj094; RA Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., RA Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., RA Itoh T., Gojobori T., Sasaki T.; RT "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa RT ssp. japonica genome information."; RL Nucleic Acids Res. 34:D741-D744(2006). RN [5] {ECO:0000313|EMBL:BAH93379.1} RP NUCLEOTIDE SEQUENCE. RG The Rice Annotation Project (RAP); RA Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., RA Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., RA Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., RA Harada E., Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., RA Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., RA Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., RA Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., RA Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., RA Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., RA Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., RA Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., RA Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., RA Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., RA Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., RA Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., RA Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., RA Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.; RT "Curated Genome Annotation of Oryza sativa ssp. japonica and RT Comparative Genome Analysis with Arabidopsis thaliana."; RL Genome Res. 17:175-183(2007). RN [6] {ECO:0000313|EMBL:BAH93379.1} RP NUCLEOTIDE SEQUENCE. RG The Rice Annotation Project (RAP); RA Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., RA Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., RA Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H., RA Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., RA Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., RA Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., RA Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., RA Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., RA Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., RA Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., RA Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., RA Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., RA Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., RA Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., RA Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., RA Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., RA Piegu B., Panaud O., Echeverria M.; RT "The Rice Annotation Project Database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [7] {ECO:0000313|EMBL:BAS96618.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=23299411; DOI=10.1093/pcp/pcs183; RA Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., RA Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., RA Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.; RT "Rice Annotation Project Database (RAP-DB): an integrative and RT interactive database for rice genomics."; RL Plant Cell Physiol. 54:E6-E6(2013). RN [8] {ECO:0000313|EMBL:BAS96618.1, ECO:0000313|Proteomes:UP000059680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680}; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [9] {ECO:0000313|EMBL:BAS96618.1} RP NUCLEOTIDE SEQUENCE. RA Millard Andrew; RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP008212; BAH93379.1; -; Genomic_DNA. DR EMBL; AP014962; BAS96618.1; -; Genomic_DNA. DR UniGene; Os.22917; -. DR PaxDb; C7J3Z7; -. DR EnsemblPlants; OS06T0196700-01; OS06T0196700-01; OS06G0196700. DR Gramene; OS06T0196700-01; OS06T0196700-01; OS06G0196700. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; HENTNQA; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000059680; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000059680}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000059680}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 34044 MW; 0EAFAA76B9AED013 CRC64; MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR YYSSYLISHY PNALSATLWD YELIVVILIG QVHQNLSFL // ID D1GEI4_BRARP Unreviewed; 1276 AA. AC D1GEI4; DT 19-JAN-2010, integrated into UniProtKB/TrEMBL. DT 19-JAN-2010, sequence version 1. DT 05-JUL-2017, entry version 61. DE SubName: Full=Disease resistance protein {ECO:0000313|EMBL:ACP30626.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:ACP30626.1}; RN [1] {ECO:0000313|EMBL:ACP30626.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=BrTNL19 {ECO:0000313|EMBL:ACP30626.1}; RX PubMed=19838736; DOI=10.1007/s00438-009-0492-0; RA Mun J.-H., Yu H.-J., Park S., Park B.-S.; RT "Genome-wide identification of NBS-encoding resistance genes in RT Brassica rapa."; RL Mol. Genet. Genomics 282:617-631(2009). RN [2] {ECO:0000313|EnsemblPlants:Bra012540.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012540.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [3] {ECO:0000313|EnsemblPlants:Bra012540.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012540.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FJ842845; ACP30626.1; -; Genomic_DNA. DR ProteinModelPortal; D1GEI4; -. DR STRING; 3711.Bra012540.1-P; -. DR EnsemblPlants; Bra012540.1; Bra012540.1-P; Bra012540. DR Gramene; Bra012540.1; Bra012540.1-P; Bra012540. DR OrthoDB; EOG093612P2; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.10140; -; 1. DR Gene3D; 3.80.10.10; -; 2. DR Gene3D; 4.10.1000.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR011713; Leu-rich_rpt_3. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR003617; TFIIS/CRSP70_N_sub. DR InterPro; IPR017923; TFIIS_N. DR InterPro; IPR000157; TIR_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR InterPro; IPR000571; Znf_CCCH. DR Pfam; PF02362; B3; 1. DR Pfam; PF07725; LRR_3; 1. DR Pfam; PF08711; Med26; 1. DR Pfam; PF00931; NB-ARC; 1. DR Pfam; PF01582; TIR; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00509; TFS2N; 1. DR SMART; SM00255; TIR; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF47676; SSF47676; 1. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52200; SSF52200; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51319; TFIIS_N; 1. DR PROSITE; PS50104; TIR; 1. DR PROSITE; PS50103; ZF_C3H1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Leucine-rich repeat {ECO:0000256|SAAS:SAAS00492074}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Repeat {ECO:0000256|SAAS:SAAS00492321}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}. FT DOMAIN 46 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 259 TIR. {ECO:0000259|PROSITE:PS50104}. FT DOMAIN 976 1050 TFIIS N-terminal. FT {ECO:0000259|PROSITE:PS51319}. FT DOMAIN 1107 1135 C3H1-type. {ECO:0000259|PROSITE:PS50103}. FT DNA_BIND 46 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 1107 1135 C3H1-type. {ECO:0000256|PROSITE- FT ProRule:PRU00723}. SQ SEQUENCE 1276 AA; 143772 MW; 58E6D9AEBB9626A9 CRC64; MEILFEKCLT TSDLSNLDTN VVTANEDVGK YFRLVTVVVR GTEQILRIED EEGKPWQFGF TDLNVSQRYV LTKGWSNYVK EKQLGVGDFV FLQRLFTDSS RLFIGFRRRE AVLGQCQDLT SLATASEKLK EVETPLQLRS PRHSVTGFDG ILLVSGGDNQ DSEERYFISY ISKELCLRGF TPLIYDLTKS TLAGVEMLHR SRVGIIIFSN NYASSRQCLD KFVAILDYSK ANNFVLLPVF FKVKVSDIRG QSGSFRRAFS RLEHSVLSSQ VPTLTAINKY QYMKGEDVIL AKSIVSDVCL LLNSETNMKL RGRLQIQSIL SLLNCSHFSA PHIVGLWGMA GIGKTAITRE IFRRQAERYD VCYFLPDFHI VCQTRGLSHL RDEFFSRISG EEKVTIDACD TKLGFIRDRF LSKKVLVVLD GVSSARDAEF LVGGFGWFSG GHTLILTSRN RQVLVQCNAK EIYEIQKLSE RESLQLCSQF ATEQNWKGST SLVSELVNYA SGIPLALCAL GSSLQNQCIK DEKQHLKRLR QNPLVEIQDA FKRSFNVLDG NEKNTFLDLA CFFRGENKDY VVNILDGCGF LTELGIYGLI DESLISIVDN KIEMLNIFQD TGRFVVCQES SETGKRSRLW DPSDIVDVLT NNSGTEAIEG IFLDSTGLTV ELSPTVFEKI YRLRFLKLYS PTSKNHCNVS LPQGLYSLPD ELRLLHWERC PLESLPRKFN PKNIVELNMP YSNMTKLWKG TKNLENLKRI ILSHSRRLIK FPRLSKARNL EHIDLEGCTS LVKVNSSILH HHKLIFLSLK DCSHLQTMPT TVHLEALEVL NLSGCLELED FPDFSPNLKE LYLAGTAIRE MPSSIGGLSK LVTLDLENCD RLQHLPPEIR NLKVVVTLSA KRPAASMNLS SVEDKAPPYT RCRLKRVIES VILSLRKKKR ENTVPRADMR VNEKTMEEKE VREKSVDGDN DDDFDPFATL CDDRKKSILK IQEKLEDPDL SEEALVELLQ KLEYVDITLK DLQGSNIGRL VNLVQRRRTG NAKRLAQQLI KKWKETVEKT LTDKQPSDLK PPNLIGKRKE CNSESQNKHR SHPFHHPKDT ETSVPEGSLN LEGLPLRPGK PVCASYFHTG SCISGPTCIF DHPSLIPVHK TTSLYSNQLG LSSSIGDSSS DLVGPATKQR RIHKNTSSMA SETLHSSPLG FASSIGDSSS ELVEASTKKP PVHKNTSSLV PQMPHFNPLG FSYSIGDSSS ELVEASTVSE ITHTNVGRNP SDSWDDEEDS QFWLHL // ID D7KCU9_ARALL Unreviewed; 361 AA. AC D7KCU9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 45. DE SubName: Full=Leafy cotyledon 2 {ECO:0000313|EMBL:EFH69778.1}; GN ORFNames=ARALYDRAFT_473040 {ECO:0000313|EMBL:EFH69778.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH69778.1; -; Genomic_DNA. DR RefSeq; XP_002893519.1; XM_002893473.1. DR STRING; 59689.fgenesh2_kg.1__2994__AT1G28300.1; -. DR EnsemblPlants; fgenesh2_kg.1__2994__AT1G28300.1; fgenesh2_kg.1__2994__AT1G28300.1; fgenesh2_kg.1__2994__AT1G28300.1. DR GeneID; 9329580; -. DR Gramene; fgenesh2_kg.1__2994__AT1G28300.1; fgenesh2_kg.1__2994__AT1G28300.1; fgenesh2_kg.1__2994__AT1G28300.1. DR KEGG; aly:ARALYDRAFT_473040; -. DR OrthoDB; EOG09360FID; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0010601; P:positive regulation of auxin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0010431; P:seed maturation; IEA:EnsemblPlants. DR GO; GO:0010344; P:seed oilbody biogenesis; IEA:EnsemblPlants. DR GO; GO:0010262; P:somatic embryogenesis; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41418 MW; 656CB7F7F6DD0BF0 CRC64; MDNFLPFSSS NANSVQELSM DLNNNRSHFT TVPTYDHLAQ PHHLMPPYSY PVEQMTAVTN PQPVYFSEGY PQIPVTKTGS EFGSLVGNPC LRQERGGFLD PRMTKMARIN RKNAMIRSRN NSSPNSSPSE LVDSKRQVMM LNLKNNVQIS DKKDSYQQST FDNKKLRVLC EKELKNSDVG SLGRIVLPKR DAEANLPKLS DKEGIVLEMR DVFSMQSWSF KYKFWSNNKS RMYVLENTGE FVKQNGAEMG DFLTIYEDES KNLYFAINGN SGKQNEGREN ESRERNHYED TMLDYISRDE EEASIAMLIG NLNDHYPIPN DLMDLATDLQ YHQATSSVPP EDHAYMGSSD DQVSFNDFEW W // ID D7KEH6_ARALL Unreviewed; 133 AA. AC D7KEH6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 40. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH66437.1}; GN ORFNames=ARALYDRAFT_312638 {ECO:0000313|EMBL:EFH66437.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH66437.1; -; Genomic_DNA. DR RefSeq; XP_002890178.1; XM_002890132.1. DR STRING; 59689.fgenesh1_pm.C_scaffold_1001418; -. DR EnsemblPlants; fgenesh1_pm.C_scaffold_1001418; fgenesh1_pm.C_scaffold_1001418; fgenesh1_pm.C_scaffold_1001418. DR GeneID; 9326240; -. DR Gramene; fgenesh1_pm.C_scaffold_1001418; fgenesh1_pm.C_scaffold_1001418; fgenesh1_pm.C_scaffold_1001418. DR KEGG; aly:ARALYDRAFT_312638; -. DR OrthoDB; EOG09360V85; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 133 AA; 15584 MW; B779AD90C934BE82 CRC64; MADTGEVRFF KPFISQKSSK SLAIPLGFEE HFPAPLPITV DLLDYNGRSW TVRVKKRGEN VFLTLGWENF VKDNNLEDGK HLNFIYDRQR TFYVIIFGHN MCSEFRSFPQ VVVEVDDYKN GEEVDEEEQE NNQ // ID D7KET2_ARALL Unreviewed; 891 AA. AC D7KET2; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_473256 {ECO:0000313|EMBL:EFH69871.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH69871.1; -; Genomic_DNA. DR RefSeq; XP_002893612.1; XM_002893566.1. DR STRING; 59689.fgenesh2_kg.1__3210__AT1G30330.2; -. DR EnsemblPlants; fgenesh2_kg.1__3210__AT1G30330.2; fgenesh2_kg.1__3210__AT1G30330.2; fgenesh2_kg.1__3210__AT1G30330.2. DR GeneID; 9326927; -. DR Gramene; fgenesh2_kg.1__3210__AT1G30330.2; fgenesh2_kg.1__3210__AT1G30330.2; fgenesh2_kg.1__3210__AT1G30330.2. DR KEGG; aly:ARALYDRAFT_473256; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 752 836 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 489 536 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 891 AA; 98694 MW; B7F90A473A466D64 CRC64; MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPSRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS PLMWDRGLQS LNFQGMGGNP WMQPRLDASG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSSG FSMQSPSLVQ PQMLQQQLSQ QQQQQLSQQQ QQLSQQQQQQ QQLSQQQQQQ QLSQQQQQQL SQQQQQHAYL GVPETHQPQS QAQSQSNNHL SQQQQQVENN HNPSASSAAV VSAMSQYGSA SQSNTSPLQS MTSLCHQQSF SDTNGGNNPI SPLHTLLSNF SQDESSQLLN LTRTNSAMTS SGWPSKRPAC SIEQEVSASD PHSHLLFGVN IDSSSLLMPN GMSNLRSIGI EGGDSTALPF TSSNFNNDFS GNLAMTTPSS CIDESGFLQS SENLGTENPQ SNTFVKVYKS GSFGRSLDIS KFSSYHELRS ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK ILSPQEVQQM GKRGLELLNS APSSNNVDKL PSNGNCDDFG NRSDPRNLGN GIASVGGSFN Y // ID D7KEX5_ARALL Unreviewed; 168 AA. AC D7KEX5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 39. DE SubName: Full=DNA binding protein {ECO:0000313|EMBL:EFH67772.1}; GN ORFNames=ARALYDRAFT_314370 {ECO:0000313|EMBL:EFH67772.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH67772.1; -; Genomic_DNA. DR RefSeq; XP_002891513.1; XM_002891467.1. DR STRING; 59689.fgenesh1_pm.C_scaffold_1003150; -. DR EnsemblPlants; fgenesh1_pm.C_scaffold_1003150; fgenesh1_pm.C_scaffold_1003150; fgenesh1_pm.C_scaffold_1003150. DR GeneID; 9327575; -. DR Gramene; fgenesh1_pm.C_scaffold_1003150; fgenesh1_pm.C_scaffold_1003150; fgenesh1_pm.C_scaffold_1003150. DR KEGG; aly:ARALYDRAFT_314370; -. DR OrthoDB; EOG09360SPH; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 19558 MW; 0B3CBB1A0CFAB587 CRC64; MHTNRRSSGR ITSAATQRRL KPEPEPTVKK FIKVILLKTI KEKMMKVPAR FVRFGPKLTD NVTLETPVGF KCSIRIRRIG DEVWFEKGWS EFAEAHFLSD GHFLFFHYKG DSCFRVVIFD VSASEIDYPL DKVYVIESDA DDDDKEEGLP DLKLKKKPRV NIKSYNTW // ID D7KEX6_ARALL Unreviewed; 226 AA. AC D7KEX6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH70451.1}; GN ORFNames=ARALYDRAFT_891847 {ECO:0000313|EMBL:EFH70451.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH70451.1; -; Genomic_DNA. DR RefSeq; XP_002894192.1; XM_002894146.1. DR STRING; 59689.scaffold_104641.1; -. DR EnsemblPlants; scaffold_104641.1; scaffold_104641.1; scaffold_104641.1. DR GeneID; 9327576; -. DR Gramene; scaffold_104641.1; scaffold_104641.1; scaffold_104641.1. DR KEGG; aly:ARALYDRAFT_891847; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005886; C:plasma membrane; IEA:EnsemblPlants. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0034613; P:cellular protein localization; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009409; P:response to cold; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 226 AA; 25855 MW; BD4C24C2D40C783D CRC64; MEMDSAQNQF NKRARLFEDS QDKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG DVCVFELLRT RDFILKVTAF RVNEYV // ID D7KGR6_ARALL Unreviewed; 337 AA. AC D7KGR6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH70528.1}; GN ORFNames=ARALYDRAFT_474200 {ECO:0000313|EMBL:EFH70528.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH70528.1; -; Genomic_DNA. DR RefSeq; XP_002894269.1; XM_002894223.1. DR STRING; 59689.fgenesh2_kg.1__4154__AT1G50680.1; -. DR EnsemblPlants; fgenesh2_kg.1__4154__AT1G50680.1; fgenesh2_kg.1__4154__AT1G50680.1; fgenesh2_kg.1__4154__AT1G50680.1. DR GeneID; 9330330; -. DR Gramene; fgenesh2_kg.1__4154__AT1G50680.1; fgenesh2_kg.1__4154__AT1G50680.1; fgenesh2_kg.1__4154__AT1G50680.1. DR KEGG; aly:ARALYDRAFT_474200; -. DR KO; K09287; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 84 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 157 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 84 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 157 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38489 MW; B790C9FA2E3AD942 CRC64; MRLNDEPENA LVVSSATKTV VVSGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSAAE AATAYDSASI KLRSFDANSH RNFPWSNITV HEPDFQDCYT TETVLNMIRD GSYPHKFRDF LRVRSQIVAS MNIGGTKQVR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISDDQ SEKEDGEIGG SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IVFYTCDVPN NVKTLEGQSK TFLMIDVHYF SDNGTVVAEE VSMTVHDSSE EGMKTENFVS SKSKDKETKT EENKGGFMLF GVRIQCP // ID D7KHB3_ARALL Unreviewed; 1096 AA. AC D7KHB3; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 48. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_335174 {ECO:0000313|EMBL:EFH69293.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH69293.1; -; Genomic_DNA. DR RefSeq; XP_002893034.1; XM_002892988.1. DR STRING; 59689.fgenesh1_pg.C_scaffold_1001739; -. DR EnsemblPlants; fgenesh1_pg.C_scaffold_1001739; fgenesh1_pg.C_scaffold_1001739; fgenesh1_pg.C_scaffold_1001739. DR GeneID; 9329096; -. DR Gramene; fgenesh1_pg.C_scaffold_1001739; fgenesh1_pg.C_scaffold_1001739; fgenesh1_pg.C_scaffold_1001739. DR KEGG; aly:ARALYDRAFT_335174; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0046983; F:protein dimerization activity; IEA:EnsemblPlants. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010311; P:lateral root formation; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009723; P:response to ethylene; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 968 1061 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 506 529 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1096 AA; 121472 MW; D6FAD0FCC451F391 CRC64; MKAPSNGFLP TSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRIGLSSS HKGTWVCRDE KSQLMLGIRR ANRQTPTLSS SVISSDSMHI GILAAAAHAN ANSSPFTIFF NPRASPSEFI VPLAKYNKAL YAQVSLGMRF RMMFETEDCG VRRYMGTVTG ISDLDPVRWK GSQWRNLQVG WDESTAGDRP SRVSIWEIEP VITPFYICPP PFFRPKYPRQ PGMPDDELDM ENAFKRAMPW MGEDFGMKDA QSSMFPGLSL VQWMSMQQNN PLSGSATPQL PSALSSYNLP NNFASNDPSK LLNFQSPNLS SANSQFNKSN TVNHISQQMQ AQPAMVKSLQ QQQQQQQQQL QQQQQQQLQI SHQQLQQQGN YSNGASAVAN QVSCQNPNQP TGFSQSQLQQ QSMLPSGAKM IHQNINSVGN KGSSQMTSFV QEMQFQQQLE LHNSSQLLRN QQEQSSLHSS QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSVPPVSSSL QPQLSVLQQT QSHQLQQLLS SQNQQPLAHG NNSFSASTFM QPPQIQVSHQ QQEQMNNKNL VAAGQSHSGH TDGEAPSCST SPSANHTGHD NVSPTNFLSR NQQQGQAASV SASDSVFDRA SNPVQEHYTK TESRFNQGMV NLKSGGEQFR FKGAVTDQID VSTAGATYCP DVVGPAQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDVLYSQK DFQNLVPNYG NAPRDIETEL SSAAISSQSF GIPSIPFKSG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPITNQ ACSETDSGNA WKVHYEDTSA AASFNR // ID D7KHN0_ARALL Unreviewed; 353 AA. AC D7KHN0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH67877.1}; GN ORFNames=ARALYDRAFT_474227 {ECO:0000313|EMBL:EFH67877.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH67877.1; -; Genomic_DNA. DR RefSeq; XP_002891618.1; XM_002891572.1. DR EnsemblPlants; fgenesh2_kg.1__4181__AT1G51120.1; fgenesh2_kg.1__4181__AT1G51120.1; fgenesh2_kg.1__4181__AT1G51120.1. DR GeneID; 9327680; -. DR Gramene; fgenesh2_kg.1__4181__AT1G51120.1; fgenesh2_kg.1__4181__AT1G51120.1; fgenesh2_kg.1__4181__AT1G51120.1. DR KEGG; aly:ARALYDRAFT_474227; -. DR KO; K09287; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 104 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 179 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 104 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 179 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 40499 MW; D2470C81251D594D CRC64; MDKMSYEAKT TTETSGSSDS VLHITKRMKP TLVTTTTIKP ALSNTTKYKG VVQQQNGHWG AQIYAEHKRI WLGTFKSAPE AAAAYDSASI KLRSFDANSH RNFPWSDFTV HEPDFQECYS TEAVLNMIRD GSYQHKFRDF LRIRSQIVAN INIVGSKQVR GGEGGAQESN KCFSCTQLFQ KELTPSDVGK LNRLVIPKKY AVKYMPFISD DQSEKETSEG VEDVEVVFYD RAMRQWKFRY CYWRSSQSFV FTRGWNGFVK EKNLKEKDII VFYTCDVPSN VKTLEGQSKN FLMIDVHYFS GNGFNLPEEV NKTVHESSDE EMKTETLFSS KLEEETKSEE KKGGFMLFGV RIQ // ID D7KI68_ARALL Unreviewed; 903 AA. AC D7KI68; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 51. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_472210 {ECO:0000313|EMBL:EFH66615.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH66615.1; -; Genomic_DNA. DR RefSeq; XP_002890356.1; XM_002890310.1. DR STRING; 59689.fgenesh2_kg.1__2164__AT1G19850.1; -. DR EnsemblPlants; fgenesh2_kg.1__2164__AT1G19850.1; fgenesh2_kg.1__2164__AT1G19850.1; fgenesh2_kg.1__2164__AT1G19850.1. DR GeneID; 9329137; -. DR Gramene; fgenesh2_kg.1__2164__AT1G19850.1; fgenesh2_kg.1__2164__AT1G19850.1; fgenesh2_kg.1__2164__AT1G19850.1. DR KEGG; aly:ARALYDRAFT_472210; -. DR KO; K14486; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 794 878 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 903 AA; 99570 MW; 13BE4245D12D21E6 CRC64; MASLSCVEDK MKTSCLVNGG GTITTTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG GSKHPTEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY TAQPPTQELV VRDLHENTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK SQLMVGVRRA NRQQTALPSS VLSADSMHIG VLAAAAHATA NRTPFLIFYN PRACPAEFVI PLAKYRKAIC GSQLSVGMRF GMMFETEDSG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE WDEPGCNDKP TRVSPWDIET PESLFIFPSL TSGLKRQLHP SYFAGETEWG SLIKRPLIRV PDSANGIMPY ASFPNMASEQ LMKMMMRPHN NQNVPSFMSE MQQNVVMGHG GLLGDMKMQQ PMMMSRKSEM LQPQNKLTVN PSASNSSGQE QNLSQSMSAP AKPDNSTLSG CSSGRVEHGL EQSMEQASQA TTSTVCNEEK VNQLLQKPGA SSPVQADPCL DISQQIYPPQ SDPINGFSFL ETDELTSQVS SFQSLAGSYK QPFMLSSQDS SAVGLPDSTN SPVFHDVWDN QLNGLKFDQF SPLMQQDLYA SQNICMSNST TSNILDPPLS NTVLDDFCAI KETDFQNHPS SCLVGNNNTS FAQDVQSQIT SASFADSQAF SRQDFPDNSG GTGTSSSNVD FDDSSLLQNS KGSSWKKIAT PRVRTYTKVQ KTGSVGRSID VTSFKDYKEL KSAIECMFGL EGLLTQPQSS GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC IRILSPTEVQ QMSEEGMKLL NSAGINDLKT SVS // ID D7KIM5_ARALL Unreviewed; 125 AA. AC D7KIM5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH70604.1}; GN ORFNames=ARALYDRAFT_892188 {ECO:0000313|EMBL:EFH70604.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH70604.1; -; Genomic_DNA. DR RefSeq; XP_002894345.1; XM_002894299.1. DR EnsemblPlants; scaffold_104982.1; scaffold_104982.1; scaffold_104982.1. DR GeneID; 9330406; -. DR Gramene; scaffold_104982.1; scaffold_104982.1; scaffold_104982.1. DR KEGG; aly:ARALYDRAFT_892188; -. DR OrthoDB; EOG09360XDM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 125 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 125 AA; 14578 MW; F813B4D7030B8F20 CRC64; MAQELDLELG LAPYDPWVLK KNLTESDLSR YGFVILPKQD FEKIIPHMER GLVENLGNGV EVKVHIVEEG HESDDYTLTL IKCSGRYMLR GGWYNMVKAK GYKTNDEIGL TWDKWTRRFL LHHIN // ID D7KJF3_ARALL Unreviewed; 625 AA. AC D7KJF3; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_681177 {ECO:0000313|EMBL:EFH70071.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH70071.1; -; Genomic_DNA. DR RefSeq; XP_002893812.1; XM_002893766.1. DR STRING; 59689.Al_scaffold_0001_3500; -. DR EnsemblPlants; Al_scaffold_0001_3500; Al_scaffold_0001_3500; Al_scaffold_0001_3500. DR GeneID; 9327143; -. DR Gramene; Al_scaffold_0001_3500; Al_scaffold_0001_3500; Al_scaffold_0001_3500. DR KEGG; aly:ARALYDRAFT_681177; -. DR KO; K14486; -. DR OrthoDB; EOG093613U0; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 512 593 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 625 AA; 70873 MW; D2514FC1AD97AEE7 CRC64; MENNEELNAQ PELLGIIDRT QTYMYEQLWK ICAGPLCDLP KPGETIYYFP QGHIELIEAS TKDELDQIRP HFDLPSKLRC CVDDIQLKID QNTDDVYAEI YLMPDTTDVI TPITTMDNQR PMVYSFSKIL TSSDANTHGG LSILKRHATE CLPPLDMSQR TPMQHLVAKD LHGREWTFKH SFRGTPRRHL FTSGWSLFAT TKRLIVGDAF VFLRGENGEL GVGIRRARHQ LGHKPSLVIS TQCMKDGVIA SVVNAFKSKC KFIVVYKPSS SQFVVNYDKF VDAMNNKFIV GSRFRMRFEG QDFSEKRYSG TIIGVNDMSP HWKDSEWRSL QVQWDELSPF PRPDKVSPWE IEHLIPSSSI SQPTVLQKKR ARQCNEIGST SSNLLTGQEI GQSSLSSPKS VPEFSCRDAV EDSKFPSDWL MSDLVPAIPK PNNNNNQLVQ QTKEKITTEA TTSCILFGVD LTKASKTKDP MGPIEATETT TSCILSQDKK LDQTLTWTSP KEVQSSKFNS TRRRIKVQMQ GVVIGRAVDL TVFHGYNQLI QKLEELFDLK DELRSRNQWE IVFINNEGNV MPLGDDPWPE FCNMAKKIFI GSKEEIEKMK SRNKVSQAKS TVLTSSSDVP PNVKA // ID D7KK63_ARALL Unreviewed; 578 AA. AC D7KK63; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 46. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_336503 {ECO:0000313|EMBL:EFH67360.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH67360.1; -; Genomic_DNA. DR RefSeq; XP_002891101.1; XM_002891055.1. DR EnsemblPlants; fgenesh1_pg.C_scaffold_1003068; fgenesh1_pg.C_scaffold_1003068; fgenesh1_pg.C_scaffold_1003068. DR GeneID; 9329883; -. DR Gramene; fgenesh1_pg.C_scaffold_1003068; fgenesh1_pg.C_scaffold_1003068; fgenesh1_pg.C_scaffold_1003068. DR KEGG; aly:ARALYDRAFT_336503; -. DR OrthoDB; EOG093614FP; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 483 566 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 84 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 65571 MW; DAF7519B52931D41 CRC64; MTLGLRGSNK IFYALDGTHH TISHTLPCKA KQPPPLQRRV IAIQLKVERN SDETYAEITL MPNTTQVVIP TQNENQFRPL VNSFTKVLTA SDTSAHGGFS VPRKLAIECL PPLDMSQPLP AQELLTIDLH GNQWRFKHSY RGTPRRHLLT TGWNAFITSK KLVAGDVIVF LRGETGELRV SIRRARYQQG NIPSSLISIE SMRHGVIASA KHAFDNQCMF IVVYKPRFIF CVCISIRSSQ FIVNYDKFLD AVNNKFNVGS RFTMRFEEEN FSERRYFGTI IGVSDFSPHW KCSEWRSLKV QWDEFASFPR PDKVSPWEIK HSTPSSNVLP SSMLKNKRSR EFNEIGSSSS HLLPPILTQG QEIGQPSMTS PMNVPLSYRD AIEDDSTPSR LLMSYSVQTM PRLNYNNDQI VTPIEGNITN NGGASCRVFG VSLATPPVIK DPIEQIDSDP NLEISKLSQE KIFGLGQMRS TREIQSKQLS STRTCTKVQM HGVTLGRALD LSVLNGYDQL ILELEKLFDL KGQLQNRNQW EIVFTDNEED EMLVGDDPWP EFCNMVKKII IYSKEEVKNF KSGNSRSN // ID D7KKR3_ARALL Unreviewed; 146 AA. AC D7KKR3; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH66067.1}; GN ORFNames=ARALYDRAFT_888314 {ECO:0000313|EMBL:EFH66067.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH66067.1; -; Genomic_DNA. DR RefSeq; XP_002889808.1; XM_002889762.1. DR EnsemblPlants; scaffold_101108.1; scaffold_101108.1; scaffold_101108.1. DR GeneID; 9325872; -. DR Gramene; scaffold_101108.1; scaffold_101108.1; scaffold_101108.1. DR KEGG; aly:ARALYDRAFT_888314; -. DR OrthoDB; EOG093618VY; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 130 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 146 AA; 17236 MW; 5A895E5289F9766C CRC64; MAKNNDINLD LSLSQYVEDD PWVLTKKLSD SDLCYRAQLY LPKQEMEQFI LPEMENDLVR KLGAGVEIKL RDIDNVSDDS YTVRLKVRNG QYYLEKGWRL IKNDKCLKTG DHIGLFWDKL TGEFKFKHSE SQSIVKRVLI RHRRTN // ID D7KL38_ARALL Unreviewed; 601 AA. AC D7KL38; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_473654 {ECO:0000313|EMBL:EFH70114.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH70114.1; -; Genomic_DNA. DR RefSeq; XP_002893855.1; XM_002893809.1. DR EnsemblPlants; fgenesh2_kg.1__3608__AT1G35540.1; fgenesh2_kg.1__3608__AT1G35540.1; fgenesh2_kg.1__3608__AT1G35540.1. DR GeneID; 9329916; -. DR Gramene; fgenesh2_kg.1__3608__AT1G35540.1; fgenesh2_kg.1__3608__AT1G35540.1; fgenesh2_kg.1__3608__AT1G35540.1. DR KEGG; aly:ARALYDRAFT_473654; -. DR OrthoDB; EOG093612K8; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 514 601 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 601 AA; 68104 MW; A5C90E8E004B8520 CRC64; MESGNVVNAQ PELSGITVDG SKRYMYEQLW KLCAGPLCDI PKIGEKVYYF PQGHIELVEA STGEKLNELQ PIVDLPSKLQ CRVITIQLKV ERNSDETYAE ITLMPYTTQV VIPTQNENQF RPLVNSFTKV LTASDTSAHG GFSVPRKLAI ECLPPLDMSQ PLPAQELLTI DLHGNQWRFK HSYRGTPRRH LLTTGWNAFI TSKKLVAGDV IVFLRGETGE LRVGIRRAGY QQGNIPSSII SIESMRHGVI ASAKHAFDNQ CMFIVVYKPR SSQFIVNYDK FLDAMNNKFN VGSRFTKRFE EDDFSERRYF GTIIGVIDFS PHWKCSEWRS LKDEFASFPR PDKVSPWEIE YSTPSSNVLR LSMLKNKCSR EFNEIGSSSS HLLPPILTQG QEIGQPSMTS PMNVPLSYRD AIEDNSTPSR LLMSYSVQTM SRLNYNNDQM VTPIIEGNIT NNGGASCRVF GVSLATPPVI KDPIEQMDSY PNSEISKLSQ EKKFGLGQMR SPREIQSKQL SSTRTCTKVQ MHGVALGRAL DLSVLNGYDQ LILELEKLFD LKGQLQNRNQ WEIAFKDNEE DEMLVGDDPW PEFCNMVKKI IIYSNEEVKN F // ID D7KM30_ARALL Unreviewed; 629 AA. AC D7KM30; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_681426 {ECO:0000313|EMBL:EFH67483.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH67483.1; -; Genomic_DNA. DR RefSeq; XP_002891224.1; XM_002891178.1. DR EnsemblPlants; Al_scaffold_0001_3749; Al_scaffold_0001_3749; Al_scaffold_0001_3749. DR GeneID; 9327286; -. DR Gramene; Al_scaffold_0001_3749; Al_scaffold_0001_3749; Al_scaffold_0001_3749. DR KEGG; aly:ARALYDRAFT_681426; -. DR OrthoDB; EOG093614FP; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 532 615 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 629 AA; 70912 MW; C1760090CED3CAB0 CRC64; MESGNVVNAQ PELSGITVDE SKSYMYEQLW KLCAGPLYDI PKVGEKVYYF PQGHIEILSL SLSLSLSLSL SLSLSLSLSL SRVIAIQLKV EKNSDETYAE ITLMPYTTQV VIHNQNDNHY RPSVNSFTKV LTASDTSAHG GFSVPRKHAI ECLPPLNMSE PLPAQELLTT DLQGNQWRFK HSYRGTPPRH LITTGWNAFT TSKKLVAGDV IVFLRGECGE LRVGIRRAGH QQGNRPSSLI SIDSMGHGVI ASAVHAFDNQ CMFIVVCKPS IRSSQFIVSY DKFLDAVNKK FNVGSRFTMR FEGDDLSERR YSGTIIGVKD FSPHWIESEW RSLEVKFSFT LYNIILRVKW DEFASFPRPD KVSPWEIEHL TPLSNVLRSS LLKNKRSREV NEIGSTSSHL LPPISTQDQE IGQPSMIYPM NVLPSYRDAT EDAEIPSRLL ISYPVPTMPK LTYNNNQMVT PLEKNITTNA SASCRLFGVS LATPSEIKDP IDQQDSYQIS EISKLSQEKK FGLGQTLTSA REIQSKQLSS TRSCTKVQME GVTVGRALDL SVLNGYDQLI LELEKLFDLN GQLQTRNQWE ISFIDNEGDK MFVGDDPWPE FCNMVKRIII YTKEKVKNLK SEQSLKLNK // ID D7KQC1_ARALL Unreviewed; 354 AA. AC D7KQC1; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH65649.1}; GN ORFNames=ARALYDRAFT_470180 {ECO:0000313|EMBL:EFH65649.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH65649.1; -; Genomic_DNA. DR RefSeq; XP_002889390.1; XM_002889344.1. DR EnsemblPlants; fgenesh2_kg.1__134__AT1G01030.1; fgenesh2_kg.1__134__AT1G01030.1; fgenesh2_kg.1__134__AT1G01030.1. DR GeneID; 9328151; -. DR Gramene; fgenesh2_kg.1__134__AT1G01030.1; fgenesh2_kg.1__134__AT1G01030.1; fgenesh2_kg.1__134__AT1G01030.1. DR KEGG; aly:ARALYDRAFT_470180; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:1901371; P:regulation of leaf morphogenesis; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40029 MW; AD7BA781A2CF7376 CRC64; MDLSLAPTSS DQEQDRDQEL TSNIRASSSS GPSGNNNNLP MMMIPPPEKE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DAGDIVSFQR GIGDESERSK LYIDWRHRPD MSLVQAHQFG NFGFNFNFPT TSQYSNRFHP LPEYKSVPIH RSLNIGNHQR SYYNNQRQEF VGYNYGNLAG RCYYTGSPLD QRNIVGSEPL VIDSVPVVPG RLTPVILPPL PPPPSTAGKR LRLFGVNMEC GIDYNQQEES WLVPRGEMGA SSSSSALRLN ISTDHDDDTD DGDGGDDDQF AKKGKSSLSL NFNP // ID D7KQD7_ARALL Unreviewed; 344 AA. AC D7KQD7; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 48. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH66255.1}; GN ORFNames=ARALYDRAFT_888685 {ECO:0000313|EMBL:EFH66255.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH66255.1; -; Genomic_DNA. DR RefSeq; XP_002889996.1; XM_002889950.1. DR EnsemblPlants; scaffold_101479.1; scaffold_101479.1; scaffold_101479.1. DR GeneID; 9328799; -. DR Gramene; scaffold_101479.1; scaffold_101479.1; scaffold_101479.1. DR KEGG; aly:ARALYDRAFT_888685; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0048527; P:lateral root development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:0009910; P:negative regulation of flower development; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009741; P:response to brassinosteroid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 188 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 188 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 38670 MW; 4FA1E6C8C2519EC3 CRC64; MEVSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAVHRFRGRD AVTNFKDVRM DEDEVEFLNS HSKSEIVDML RKHTYNEELD QSKRRRNGNG NMVRTMLTSG LSNDGVSTTE FRSAEALFEK AVTPSDVGKL NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLETGR VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS // ID D7KQM9_ARALL Unreviewed; 1003 AA. AC D7KQM9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=T24P13.6 {ECO:0000313|EMBL:EFH69646.1}; GN ORFNames=ARALYDRAFT_890070 {ECO:0000313|EMBL:EFH69646.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH69646.1; -; Genomic_DNA. DR RefSeq; XP_002893387.1; XM_002893341.1. DR EnsemblPlants; scaffold_102864.1; scaffold_102864.1; scaffold_102864.1. DR GeneID; 9329448; -. DR Gramene; scaffold_102864.1; scaffold_102864.1; scaffold_102864.1. DR KEGG; aly:ARALYDRAFT_890070; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 7. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 7. DR SMART; SM01019; B3; 7. DR SUPFAM; SSF101936; SSF101936; 7. DR PROSITE; PS50863; B3; 7. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 451 546 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 631 729 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 742 838 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 903 1000 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 451 546 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 631 729 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 742 838 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 903 1000 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1003 AA; 113817 MW; 25FABE9E1D5293B0 CRC64; MADQSLLHSP IKPHFFKPLL QGFRTHLNIP VAFFSKHVEG KNDQNKIAKL RSDASEKTWL VKMDGLNLTD GWEDFAFAHD LRIGDIVIFR HEGEMVFHVT ALGPSCCEIQ YYTSSHNSND DDRNDQTNIA SRNSERVKKN PRKKVESSLD HSRFVAKVSA WGLRNDRLYI PLSFARSNGL NKINSKKIYL YNEAGRSWKL DLKHDKSGMH TYIQSGWRSF CAANGIRQGQ YTFKLVRKSA PSLIRLCREK AKPKQRSVAE SSSDQSCFEG SVSPSSLRNN QLFLPRSFVS SNSLEKRCSE IVLKNEQGIK WPSVLKHYKT VTYLTKGWTS FCQVNRIKAG DSYKFKLVGT WTKPVLSLCP TNSNHDKTPL ECPNDVKTLS SNPRSGDDSS KSKEIEEENI EDKNISKTCL EIKKRKYWSR CRASVENMDD DQTNIGNSSR KNVESSSYHS SFEGSVNPSS LYKDQLYLPR NFVSSNGLDK RCSEIVLKNE RGEKRTLVLK HFKQNLTFLK KGWTSFCQVN RIKAGDSFKF KLVGTWNKPV LTLCPTVSNH HKTPLECSEG NKSEENEEED IKDKNTSQDC LEVKKRKYWS KCRASAENMD DDQTNIGSSS RKKRVKKNPI KKADSSSDHS SFVANVTASS LNCDRLYLPL GFARSNGLDK MSGKKVVLLN EEGRTWKLNL KYNKAGNQTY VRPGWKRFCD ANGMSQDQQF TFKLVQKHGP PVMRLYLAEH RPKSESSSHG SYLVGSVTAS SINKDKLYLR KSFVSSNGLD KGCKKIVLKN EWGREWNLVF RHYKSHCFTI IKRGWASFCQ GNGLKAGDSF KFKLVGTGEK PVLSLCPAES SCECPDGSDD VKSLSSNSSS GDDSSRSEEV EEESMEDKNI SQDCLEIKKR KYCCSSSYSQ NRFVTLTLTL SAFQTYKLYL PRGFTQVNGI NKPRKITLLG QDGVKRVVDL YQDKISGTMR FGKGWRESCE AQGVKIDESF VLELIWEKEA SPVLKFCTKL NSA // ID D7KQU4_ARALL Unreviewed; 357 AA. AC D7KQU4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH66942.1}; GN ORFNames=ARALYDRAFT_890147 {ECO:0000313|EMBL:EFH66942.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348713; EFH66942.1; -; Genomic_DNA. DR RefSeq; XP_002890683.1; XM_002890637.1. DR STRING; 59689.scaffold_102941.1; -. DR EnsemblPlants; scaffold_102941.1; scaffold_102941.1; scaffold_102941.1. DR GeneID; 9326745; -. DR Gramene; scaffold_102941.1; scaffold_102941.1; scaffold_102941.1. DR KEGG; aly:ARALYDRAFT_890147; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0048573; P:photoperiodism, flowering; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 123 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 192 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 123 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 192 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 39927 MW; AB519DDA704F2F3C CRC64; MDYSCVDDSS TTSESLSIST PKPTTTTEKL SSPPATMRLY RMGSGGSSVV LDSENGVETE SRKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEEE EAATSYDIAA RRFRGRDAVT NFKSQVDGNE AESAFLDAHS KAEIVDMLRK HTYADEFEQS KRKFVNGKGR HCGSETAMQG NDAVLRAREV LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL PATTTAMGMS PSPTKGVLIN LEDRTGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVCFERSTG PDRQLYIDWK VRSSPVQTVV RLFGVNIFNV SNEKPNDVAV ECGGKRSREV DLFSLGCSKK QAIINVL // ID D7KRA1_ARALL Unreviewed; 338 AA. AC D7KRA1; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH65186.1}; GN ORFNames=ARALYDRAFT_339541 {ECO:0000313|EMBL:EFH65186.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348714; EFH65186.1; -; Genomic_DNA. DR RefSeq; XP_002888927.1; XM_002888881.1. DR ProteinModelPortal; D7KRA1; -. DR STRING; 59689.fgenesh1_pg.C_scaffold_2001640; -. DR EnsemblPlants; fgenesh1_pg.C_scaffold_2001640; fgenesh1_pg.C_scaffold_2001640; fgenesh1_pg.C_scaffold_2001640. DR GeneID; 9323545; -. DR Gramene; fgenesh1_pg.C_scaffold_2001640; fgenesh1_pg.C_scaffold_2001640; fgenesh1_pg.C_scaffold_2001640. DR KEGG; aly:ARALYDRAFT_339541; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008138; F:protein tyrosine/serine/threonine phosphatase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.90.190.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000340; Dual-sp_phosphatase_cat-dom. DR InterPro; IPR029021; Prot-tyrosine_phosphatase-like. DR InterPro; IPR000504; RRM_dom. DR InterPro; IPR000387; TYR_PHOSPHATASE_dom. DR InterPro; IPR020422; TYR_PHOSPHATASE_DUAL_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00782; DSPc; 1. DR Pfam; PF00076; RRM_1; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00195; DSPc; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52799; SSF52799; 1. DR SUPFAM; SSF54928; SSF54928; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50056; TYR_PHOSPHATASE_2; 1. DR PROSITE; PS50054; TYR_PHOSPHATASE_DUAL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 320 Tyrosine-protein phosphatase. FT {ECO:0000259|PROSITE:PS50054}. FT DOMAIN 258 310 TYR_PHOSPHATASE_2. FT {ECO:0000259|PROSITE:PS50056}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38428 MW; 8A79B1D60E1ACFFD CRC64; MGPRLQTESL VYVFAADQNS FVCVEQLIPI SYYEHLPRRL PKTAILMGTG GKIWKVAMKS KHEKVYFERG WANFVADNAL KDAEFLSFVF DGYRRYAVSI YGYGEKEIND DETKSDTDYS PDSLDTTTIL VESVQVFNKS ATSRKRANTI ENPEAYLDDP NSISFETALK DRPYELPQTQ IVQEREEDGV VPKKLYVRGI PYQSTEDEIR SYFRSCGVIT KFDCKMRPED GAFSAFITFE TLELVWCLCF SFIDQAIQSG GGVLVHCFMG MSRSLLILVS LGTVVRVVAY LMKKHGMGFS KAVELIRSRR HQAYPNSGFI CSSNNLKNPS KTNLFQDH // ID D7KV47_ARALL Unreviewed; 572 AA. AC D7KV47; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 48. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_895674 {ECO:0000313|EMBL:EFH63962.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348714; EFH63962.1; -; Genomic_DNA. DR RefSeq; XP_002887703.1; XM_002887657.1. DR STRING; 59689.scaffold_202748.1; -. DR EnsemblPlants; scaffold_202748.1; scaffold_202748.1; scaffold_202748.1. DR GeneID; 9323767; -. DR Gramene; scaffold_202748.1; scaffold_202748.1; scaffold_202748.1. DR KEGG; aly:ARALYDRAFT_895674; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 572 AA; 62520 MW; 7878D1C4461692B3 CRC64; MSPPSATAGD INHRQVDPRI WRACAGASVQ IPLLYSRVYY FPQGHVEHCC PLISTLPSST SPVPCLITSI QLLADPITDE VFAHLVLQPV TQEQFTPTNY SRFGRYDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPPLDF QIDPPVQKLY ITDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG DSVVFMKKAA DEMFMGVRRT PISSSGGGSS YYGGDEYNGY YSQSSVAKED DGSAKKTFRR SGKGKLTAEA VTEAINRAAK GLPFEVAYYP TAGWSEFVVR AEDVESSMSV FWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIVA NATQLHATFP PAKRLKYPQP GGFLSGDDGD IPYSQRGLSS AAAPDPSPYM FPYSTFPAGM QGARQYDFGS FNPTGFIGEN PPQSCTNNFF SPLPTGLGKV STEMNFGSPP SDNLSPNSNT TNLSSGNDLV GNRAPISAKP NSIRLFGKTI NVQEHSESGP AESGLCEEDG SKESSDNETQ LSLSHGRGPP SV // ID D7KWV4_ARALL Unreviewed; 352 AA. AC D7KWV4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 48. DE SubName: Full=AP2 domain-containing protein RAP2.8 {ECO:0000313|EMBL:EFH63467.1}; GN ORFNames=ARALYDRAFT_476011 {ECO:0000313|EMBL:EFH63467.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348714; EFH63467.1; -; Genomic_DNA. DR RefSeq; XP_002887208.1; XM_002887162.1. DR EnsemblPlants; fgenesh2_kg.2__1141__AT1G68840.1; fgenesh2_kg.2__1141__AT1G68840.1; fgenesh2_kg.2__1141__AT1G68840.1. DR GeneID; 9324749; -. DR Gramene; fgenesh2_kg.2__1141__AT1G68840.1; fgenesh2_kg.2__1141__AT1G68840.1; fgenesh2_kg.2__1141__AT1G68840.1. DR KEGG; aly:ARALYDRAFT_476011; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 119 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 188 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 119 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 188 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 39413 MW; 8D15D3F69F81AC8D CRC64; MDSSCIDEIS SSTSESFSAT ATLSPPSHPA AALRLHRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR SYDIAARRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRRLF LSVDANGKRN GSSTTQNDNV LKTREVLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLQAG DVVTFERSTG LDRQLYIDWK ARSGPREDPV HVVVRLFGVD IFNATTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL // ID D7KXS0_ARALL Unreviewed; 665 AA. AC D7KXS0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 50. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_475338 {ECO:0000313|EMBL:EFH64443.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348714; EFH64443.1; -; Genomic_DNA. DR RefSeq; XP_002888184.1; XM_002888138.1. DR STRING; 59689.fgenesh2_kg.2__468__AT1G59750.1; -. DR EnsemblPlants; fgenesh2_kg.2__468__AT1G59750.1; fgenesh2_kg.2__468__AT1G59750.1; fgenesh2_kg.2__468__AT1G59750.1. DR GeneID; 9322728; -. DR Gramene; fgenesh2_kg.2__468__AT1G59750.1; fgenesh2_kg.2__468__AT1G59750.1; fgenesh2_kg.2__468__AT1G59750.1. DR KEGG; aly:ARALYDRAFT_475338; -. DR KO; K14486; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 635 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 73820 MW; D6B439A9CD62DFB9 CRC64; MAATTHSSVK PGGVLSDALC TELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE LDQNEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPTTGPSAPV TPDGVWKSPA DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPSHAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN EFDSGQQSEP LNINQSDIPS GSDDPENSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAVDL TRSECYEDLF KKLEEMFEIK GELLKSTKKW QVVYTDDEDD MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQPKTDAEE NGNTEGRSSS MAGSR // ID D7KYM6_ARALL Unreviewed; 101 AA. AC D7KYM6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH62993.1}; GN ORFNames=ARALYDRAFT_893748 {ECO:0000313|EMBL:EFH62993.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348714; EFH62993.1; -; Genomic_DNA. DR RefSeq; XP_002886734.1; XM_002886688.1. DR EnsemblPlants; scaffold_200822.1; scaffold_200822.1; scaffold_200822.1. DR GeneID; 9324334; -. DR Gramene; scaffold_200822.1; scaffold_200822.1; scaffold_200822.1. DR KEGG; aly:ARALYDRAFT_893748; -. DR OrthoDB; EOG09361ASA; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 101 AA; 11729 MW; FADCA210425C1982 CRC64; MNPNMMLVKK LKDSDLSYSN ALYLPKDYVE NIVRSTGVPI PRNGIQVEIL DNNNSYWVNL RENQKGPYIG NGWKNIKDAR SLKTGDVIKL YWKDTKFIFS M // ID D7L080_ARALL Unreviewed; 117 AA. AC D7L080; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH60399.1}; GN ORFNames=ARALYDRAFT_900237 {ECO:0000313|EMBL:EFH60399.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH60399.1; -; Genomic_DNA. DR RefSeq; XP_002884140.1; XM_002884094.1. DR EnsemblPlants; scaffold_304207.1; scaffold_304207.1; scaffold_304207.1. DR GeneID; 9322245; -. DR Gramene; scaffold_304207.1; scaffold_304207.1; scaffold_304207.1. DR KEGG; aly:ARALYDRAFT_900237; -. DR OrthoDB; EOG093619F8; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 109 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 117 AA; 13395 MW; B144346C6454CBBF CRC64; MAQQYLKLEL GLGQPDPWNV RKTLTDFDVS NMARVIIPKI ELEAEMGDDL IIGMDVSVED VNREHPYSVT IKRGGNDSYY LGNGWTVIKN AKGLNKDDVI GLSWDKWNRK LDFKLLR // ID D7L141_ARALL Unreviewed; 68 AA. AC D7L141; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH62467.1}; GN ORFNames=ARALYDRAFT_900280 {ECO:0000313|EMBL:EFH62467.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH62467.1; -; Genomic_DNA. DR RefSeq; XP_002886208.1; XM_002886162.1. DR EnsemblPlants; scaffold_304250.1; scaffold_304250.1; scaffold_304250.1. DR Gramene; scaffold_304250.1; scaffold_304250.1; scaffold_304250.1. DR KEGG; aly:ARALYDRAFT_900280; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 68 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 68 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 68 AA; 7697 MW; E34F952C33D58281 CRC64; MKIRAQWGSS WEVAISGKKS WNVVYLGRFG AFSSGWRCVV KEYPLVVGDT CKFTFIKPDE LLLVVSKP // ID D7L143_ARALL Unreviewed; 291 AA. AC D7L143; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH62469.1}; GN ORFNames=ARALYDRAFT_480792 {ECO:0000313|EMBL:EFH62469.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH62469.1; -; Genomic_DNA. DR RefSeq; XP_002886210.1; XM_002886164.1. DR EnsemblPlants; fgenesh2_kg.3__3493__AT2G16210.1; fgenesh2_kg.3__3493__AT2G16210.1; fgenesh2_kg.3__3493__AT2G16210.1. DR GeneID; 9322276; -. DR Gramene; fgenesh2_kg.3__3493__AT2G16210.1; fgenesh2_kg.3__3493__AT2G16210.1; fgenesh2_kg.3__3493__AT2G16210.1. DR KEGG; aly:ARALYDRAFT_480792; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 33393 MW; 4488B7EC1AD2A22C CRC64; MARNADYLRC KQERKNESFF KVVHSINISS ENMRALPHDF VRSFSDQELS RKIKIRAQWG SSWEVGISKN PRFYFMEKSG WEKFVRDNAL GNSEFITFTH KGKMHFTVNI FKQDGKEMMQ PPKSRAFLAS SSRIKTEQEE DDMKEEVVVS SNRGPTTAAE SKGRKLNLGK KAAKESQNSK RTEKVVKARR DYTGASSSTA AEFTILFKQG YLIFLRIPNS VAKDLMPDEK TIFKIHHPNG KKSWNVVFLV RFGAFSGGWR RLVKEYPLAV GDTCKFSFIK PDELLLVVSK P // ID D7L4F0_ARALL Unreviewed; 239 AA. AC D7L4F0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH62232.1}; GN ORFNames=ARALYDRAFT_674238 {ECO:0000313|EMBL:EFH62232.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH62232.1; -; Genomic_DNA. DR RefSeq; XP_002885973.1; XM_002885927.1. DR EnsemblPlants; Al_scaffold_0003_3435; Al_scaffold_0003_3435; Al_scaffold_0003_3435. DR GeneID; 9319980; -. DR Gramene; Al_scaffold_0003_3435; Al_scaffold_0003_3435; Al_scaffold_0003_3435. DR KEGG; aly:ARALYDRAFT_674238; -. DR OrthoDB; EOG09360YHN; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 27103 MW; 4D15B825EAFAEEC6 CRC64; MAINPDYLRC KEERNNESFF KEKIDIVSIL NKIRAQWGSS WEVAISKNPR FYYLEKSGWG KFVRDNALGN NEFITFTHKG KMRFTLNIFK QDGKEMMQPP QSSSFLASSS RGIKTEQRED DKKEEVVVSS ELSPTTAAES NGGTSKRNLN LGKKKARGDS AAFDKAHMPK ENAMFKIHHP DGKRSWNVTY LASTTVAFSA GWICLIKEYP IVAGVTCKLT LIKPDELLLV VLRPEEETE // ID D7L4S8_ARALL Unreviewed; 341 AA. AC D7L4S8; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH58710.1}; GN ORFNames=ARALYDRAFT_317478 {ECO:0000313|EMBL:EFH58710.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH58710.1; -; Genomic_DNA. DR RefSeq; XP_002882451.1; XM_002882405.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_3000494; fgenesh1_pm.C_scaffold_3000494; fgenesh1_pm.C_scaffold_3000494. DR GeneID; 9320629; -. DR Gramene; fgenesh1_pm.C_scaffold_3000494; fgenesh1_pm.C_scaffold_3000494; fgenesh1_pm.C_scaffold_3000494. DR KEGG; aly:ARALYDRAFT_317478; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38861 MW; 6B5A93AC1597D5F5 CRC64; MWATKSRRCA VHTSSMASSD VLPRFFTVFL SQYSSESMVI PRSYYEHLPR RLPKTAILVG TGGRFWKVAM TSRREQVYFE QGWGNFVADN ELKDGEFLTF VFDGHKSYEV SIYGRGDCKE TRAVIQVEEI SDDDTEDYSV SLHSLNNVSL HSLDNDSLQA DVEIESDSLM ADVEIESDSL QVDAEIESDS DYSPENPDTA STSVESVEVV NPTTSMTSRQ RSYKKKTIEN PELYLDDPNN ICFETCLKLR KFELLVDAQF VKDYSLKFGD QVDYIDGYGK LTATMTKWAD QRVCIKKWQK ICDRNSLTEN DSILCEVLRN EDKVVYAIKI HIFRDAAAAS T // ID D7L4T4_ARALL Unreviewed; 175 AA. AC D7L4T4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH60823.1}; GN ORFNames=ARALYDRAFT_317484 {ECO:0000313|EMBL:EFH60823.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH60823.1; -; Genomic_DNA. DR RefSeq; XP_002884564.1; XM_002884518.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_3000500; fgenesh1_pm.C_scaffold_3000500; fgenesh1_pm.C_scaffold_3000500. DR GeneID; 9318523; -. DR Gramene; fgenesh1_pm.C_scaffold_3000500; fgenesh1_pm.C_scaffold_3000500; fgenesh1_pm.C_scaffold_3000500. DR KEGG; aly:ARALYDRAFT_317484; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 19524 MW; DD9BE9C375883EFD CRC64; MASGDVLPRF YTVFLSNVSS NSLKLIPRVY YEHLPRWLPK TAILTGTGGR FWKVAMMSKR EQVYFEQGWG NFVADNDLKD GEFLTFVFDG HKSYEVSIYG RGECKETRAV IQVEEISDET ESDNDSLGSL VDVTPMPVEE NSDDTEGDND SGDSVVDVTP MPVEEISDAS ENDSS // ID D7L571_ARALL Unreviewed; 725 AA. AC D7L571; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH59801.1}; GN ORFNames=ARALYDRAFT_342636 {ECO:0000313|EMBL:EFH59801.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH59801.1; -; Genomic_DNA. DR RefSeq; XP_002883542.1; XM_002883496.1. DR STRING; 59689.fgenesh1_pg.C_scaffold_3002399; -. DR EnsemblPlants; fgenesh1_pg.C_scaffold_3002399; fgenesh1_pg.C_scaffold_3002399; fgenesh1_pg.C_scaffold_3002399. DR GeneID; 9319609; -. DR Gramene; fgenesh1_pg.C_scaffold_3002399; fgenesh1_pg.C_scaffold_3002399; fgenesh1_pg.C_scaffold_3002399. DR KEGG; aly:ARALYDRAFT_342636; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 576 678 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 576 678 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 725 AA; 80019 MW; D09659FE7AAFA42C CRC64; MKSLHVAANG EDLAEDCGIL AGDADDTALM DGMDEVGREI WLDDHGGDHN HVHVHSHEDD DLIVHHDPSI FYGDLPTLPD FPCMSSSSSS STSPAPVNAI VSSASSSSAA SSSTSSAASW AILRSDGEDP TPNQNQYASG NCDDSSGALQ STGSMEIPLD NSQGFGCGEG GGDCIDMMET FGYMDLLDSN EFFDTSAIFS QDDDTQNPNL MDQTLERQQD QVVVPMLEKN SGGDMQMMNS SLEQDDDLAT VFLEWLKNNK ETVSAEDLRK VKIKKATIES AARRLGGGKE AMKQLLKLIL EWVQTNHLQR RRTTTNNNNN FSYQQSFQQD PFQNPNPNNN NLIPPSDQTC FSPSTWVPPP PPQQAFVSDP GFGYMPAPNY PPPGEFLPLL ESPPSWPPPP PPPQSGPMPH QQFAMPPNTQ YNQFGEPTGF TGYNMNPYQY PYVPAGQVRD QRLLRLCSSA TKEARKKRMA RQRRFLSHHH RHNNNNNNNQ QNQTQIGETC AAVAPQLNPV ATTATGGTWM YWPNVPAAPP PQLPPAMETQ LPTMDRAGSL AAMPRQQAVP DRRQGWKPEK NLRFLLQKVL KQSDVGNLGR IVLPKKEAET HLPELEARDG ISLAMEDIGT SRVWNMRYRF WPNNKSRMYL LENTGDFVKT NGLQEGDFIV IYSDVKCGKY LIRGVKVRQP TGQKPEAPPS SAAATKRQNK SQRNINNNSP SANVVVASPT SQTVK // ID D7L6A0_ARALL Unreviewed; 302 AA. AC D7L6A0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 43. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH59297.1}; GN ORFNames=ARALYDRAFT_318465 {ECO:0000313|EMBL:EFH59297.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH59297.1; -; Genomic_DNA. DR RefSeq; XP_002883038.1; XM_002882992.1. DR STRING; 59689.fgenesh1_pm.C_scaffold_3001481; -. DR EnsemblPlants; fgenesh1_pm.C_scaffold_3001481; fgenesh1_pm.C_scaffold_3001481; fgenesh1_pm.C_scaffold_3001481. DR GeneID; 9319104; -. DR Gramene; fgenesh1_pm.C_scaffold_3001481; fgenesh1_pm.C_scaffold_3001481; fgenesh1_pm.C_scaffold_3001481. DR KEGG; aly:ARALYDRAFT_318465; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 35675 MW; 1E8E2D4A9519EB78 CRC64; MGRRRNIGFD KIIEERKMLS FFKIFQSSDL SSECMRAFSY SFISRLSRKD FSYKMVIRAQ WGKTWHLEIS KNPRYYYIER RGWDQFVSDN ALGENEFITF THRGNMVFHV NIYEQNGVEM LTPRKFQTMD SSSGIKKEGE SSFKDVKKEE ETDESAGRAE FVVRKRKTEE SKSSKKKMER KKKKSKSKSK SKEVLNGVPE FKITIRKSYL KFLAIPKHFV DDHIPNKSKF FTVRHPNGIG SWKVLCLVRE IRTIFSGGYS KLAREYPLMV GDKCTFKLIK PFEFVLLTSK KTRDEIDHYM ID // ID D7L967_ARALL Unreviewed; 341 AA. AC D7L967; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH61546.1}; GN ORFNames=ARALYDRAFT_479415 {ECO:0000313|EMBL:EFH61546.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH61546.1; -; Genomic_DNA. DR RefSeq; XP_002885287.1; XM_002885241.1. DR STRING; 59689.fgenesh2_kg.3__2116__AT3G18990.1; -. DR EnsemblPlants; fgenesh2_kg.3__2116__AT3G18990.1; fgenesh2_kg.3__2116__AT3G18990.1; fgenesh2_kg.3__2116__AT3G18990.1. DR GeneID; 9321353; -. DR Gramene; fgenesh2_kg.3__2116__AT3G18990.1; fgenesh2_kg.3__2116__AT3G18990.1; fgenesh2_kg.3__2116__AT3G18990.1. DR KEGG; aly:ARALYDRAFT_479415; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 39243 MW; 2FDCF9D5BAAFBC03 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEFIFPSSVY PSPLPESTVP ANKGYAGSAI QSLFTGSVKA EEATPTPKIP KKRGRKKKNA DPEEINSSAP RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V // ID D7L985_ARALL Unreviewed; 275 AA. AC D7L985; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 39. DE SubName: Full=DNA binding protein {ECO:0000313|EMBL:EFH59424.1}; GN ORFNames=ARALYDRAFT_479433 {ECO:0000313|EMBL:EFH59424.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH59424.1; -; Genomic_DNA. DR RefSeq; XP_002883165.1; XM_002883119.1. DR STRING; 59689.fgenesh2_kg.3__2134__AT3G19184.1; -. DR EnsemblPlants; fgenesh2_kg.3__2134__AT3G19184.1; fgenesh2_kg.3__2134__AT3G19184.1; fgenesh2_kg.3__2134__AT3G19184.1. DR GeneID; 9319232; -. DR Gramene; fgenesh2_kg.3__2134__AT3G19184.1; fgenesh2_kg.3__2134__AT3G19184.1; fgenesh2_kg.3__2134__AT3G19184.1. DR KEGG; aly:ARALYDRAFT_479433; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 275 AA; 31470 MW; FCC1E6AC0208F451 CRC64; MVESELSYEQ IRLKRVEENK KRMGELNLNK LAQSLRVSSS SSKPSPAKPR TMRIPVDFSE VRRSSRAKGP PPSYKEFGLE PLERRPRRSS QRRDLLNRVY ASDDARMYAF DRAEKLQSSL DPEFPSFTKP MLQSHVTGGF WLGLPLPFCK AHMPKRDEMM TLVDEEDEES MVKYLAEKNG LSGGWRGFAI DHQLVDGDAV VFQLITRTMF KVYIIRVNED ANKDSDGNEE DEDNDNELNK KQKENVSEAR QLRSSGKRKR GGNNVSNLSL PLVIS // ID D7L9F7_ARALL Unreviewed; 597 AA. AC D7L9F7; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 45. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_319704 {ECO:0000313|EMBL:EFH60326.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH60326.1; -; Genomic_DNA. DR RefSeq; XP_002884067.1; XM_002884021.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_3002720; fgenesh1_pm.C_scaffold_3002720; fgenesh1_pm.C_scaffold_3002720. DR GeneID; 9320133; -. DR Gramene; fgenesh1_pm.C_scaffold_3002720; fgenesh1_pm.C_scaffold_3002720; fgenesh1_pm.C_scaffold_3002720. DR KEGG; aly:ARALYDRAFT_319704; -. DR OrthoDB; EOG093614FP; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 516 597 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 597 AA; 67944 MW; FDF77CDB980F4E81 CRC64; MESGNVVNAQ PELSGITIDV SKRYMYEQLW KLCAGPLCDI PKIGEKVYYF PQGHIELIEA YTREELNKIQ PIFDLPSKLQ CRVIAIQLKV EKNSDETYAE ITLMPDTQVV IPTQNDNHYR PLVNSFTKVL TASDTSVHGG FSVPRKLAIE CLPPLDMSQP LPAQELLTID LHGNQWRFKH SYRGTPRRHL LTSGWNAFTT SKKLVAGDVI VFLRGETGEL RVGIRRAGHQ QKNIHSSLIS IDSMRHGVIA SAVHAFNNQC MFIVVYKPRS SQFIVSYNKF VDAVNNKFNV GSRFTMRFEG EDFSERRYSG TIIGVNNFSS HWMESEWRSL EVKWDEFASF PRPDKVSPWD IEHLTPSLNV LRPSLLKNKR SREVNEIGST SSHLLHPILT QGQEIGEPSM TSPMNVFLSY CDEIEDDETP SRMLMSYHVP TMPKLNYNND QMVTPIEENI TTNANASFRL FGVSLATSSV IKDPIEPMES YPKSEISKLC QEKKLGLGQT ITSPREIQSK QFSSTRSCTK VQMQGVPVGR ALDLNVLNGY DHLIIELEKL FDLNGQLQTR NQWKIAFKDN EGNEKLVGDN PWPEFCSMVK KIFIYPK // ID D7L9U1_ARALL Unreviewed; 355 AA. AC D7L9U1; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH58971.1}; GN ORFNames=ARALYDRAFT_317904 {ECO:0000313|EMBL:EFH58971.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH58971.1; -; Genomic_DNA. DR RefSeq; XP_002882712.1; XM_002882666.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_3000920; fgenesh1_pm.C_scaffold_3000920; fgenesh1_pm.C_scaffold_3000920. DR GeneID; 9318778; -. DR Gramene; fgenesh1_pm.C_scaffold_3000920; fgenesh1_pm.C_scaffold_3000920; fgenesh1_pm.C_scaffold_3000920. DR KEGG; aly:ARALYDRAFT_317904; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 148 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 254 352 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 254 352 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 40298 MW; DDB9F173068F1AA6 CRC64; MENVPASSPT KPHFFQPLLP GFHSHLNIPM AFFSRYIDGT KNEGNAVVKL RSNASDINWQ VKMDGRRLTQ GWQKFATSHD LQVGDIVVFR HDGDLLFHVT CLGPSCCEIQ YDNDDDVIQI SSAETDSDSD SKKNENTTEG GTSSDHSCFI TRVTESNLSK DMLFLPSDFS RSNGLKKRQC DITLLNEDGE PWTLFLTYHK SRFNRVYIRS GWRSFCLANG KRANSVLTFK LVQAATTPVL QLCSSSLSTS QNRFLTLTLT PYNLKNDKLC LPMTFVKANG IENEEKITLV DRYGIKRTTS LKLEDEYGRM RLGKEWREFC DVNGVNIGES FKLKLIKEKE DTATHLLKFC SKVFP // ID D7LAP4_ARALL Unreviewed; 263 AA. AC D7LAP4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH61111.1}; GN ORFNames=ARALYDRAFT_897360 {ECO:0000313|EMBL:EFH61111.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH61111.1; -; Genomic_DNA. DR RefSeq; XP_002884852.1; XM_002884806.1. DR STRING; 59689.scaffold_301330.1; -. DR EnsemblPlants; scaffold_301330.1; scaffold_301330.1; scaffold_301330.1. DR GeneID; 9318804; -. DR Gramene; scaffold_301330.1; scaffold_301330.1; scaffold_301330.1. DR KEGG; aly:ARALYDRAFT_897360; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 263 AA; 29706 MW; 7903ACE39BF5A555 CRC64; MSVNHYHNTL SLHQHHQNDV AISQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN GGDDDVATTE KGMLLSFEDE SGKCWKFRYS YWNSSQSYVL TKGWSRYVKD KHLDAGDVVF FQRHRFDLHR LFIGWRRRGE ASSSPAVSAV SQEALVNTTA YWSGMTTPYR QVHASTTYPN IHQEYSHYGA VADQAQSIPP VVAGSSRTVR LFGVNLECHG DAVEPPPRPD GYNGQHIYYY STPHPMNISF AGEALEQVGD GRG // ID D7LAU3_ARALL Unreviewed; 329 AA. AC D7LAU3; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 37. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH61608.1}; GN ORFNames=ARALYDRAFT_898397 {ECO:0000313|EMBL:EFH61608.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348715; EFH61608.1; -; Genomic_DNA. DR RefSeq; XP_002885349.1; XM_002885303.1. DR EnsemblPlants; scaffold_302367.1; scaffold_302367.1; scaffold_302367.1. DR GeneID; 9319283; -. DR Gramene; scaffold_302367.1; scaffold_302367.1; scaffold_302367.1. DR KEGG; aly:ARALYDRAFT_898397; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 86 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 37776 MW; 6813148CA1808751 CRC64; MLKELRDLQR FAEIVSPPAG RKWVSEELAV ISESKEVAAD MITDTVLDQM CSYSGFSLFF SGNNQRTKKV RKNPREEAES SLDLSYFVAN VTSSNIRYDS LNLPMRFVRA NGVDTRCGEM ILINENGKSW TVDLKRKKSC GTTYIRRGWR SFCHANGLRA GSSFTFKLIQ RGATLCLRLS PRELKEEDCL SEPETNQDER SSQECTKRKF KNCFVTVTLT PYNIEQSKLV LLILHSCLPR LNVSQVLPIP FTKVNDIVKA KKMSLLDKHG VKWSIKLWFE VERKRMRLVG GWKEFCYANG VKIGESIILE LIWETEESSV LKFCSKVHF // ID D7LC55_ARALL Unreviewed; 798 AA. AC D7LC55; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 47. DE SubName: Full=High-level expression of sugar-inducible gene 2 {ECO:0000313|EMBL:EFH57371.1}; GN Name=HSI2 {ECO:0000313|EMBL:EFH57371.1}; GN ORFNames=ARALYDRAFT_902034 {ECO:0000313|EMBL:EFH57371.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH57371.1; -; Genomic_DNA. DR RefSeq; XP_002881112.1; XM_002881066.1. DR STRING; 59689.scaffold_401535.1; -. DR EnsemblPlants; scaffold_401535.1; scaffold_401535.1; scaffold_401535.1. DR GeneID; 9317179; -. DR Gramene; scaffold_401535.1; scaffold_401535.1; scaffold_401535.1. DR KEGG; aly:ARALYDRAFT_902034; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 300 401 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 596 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 300 401 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 699 737 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 798 AA; 87567 MW; 95ADA48FC09070E8 CRC64; MFEVKMVSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCNK RLHCGCIASK VTIELMDYGG VGCSTCTCCH QLNLNTRGEN PGVFSRLPMK PLADRQHVNG ESGMNIDGGR NEAGLFSQPL VMGGDKREEF MPHRGFGQLM NSENTTTGYR LDAAGEMHES SPSQPSLNMG LAVNPFSPSF ATEGLEGKKH IGASQPNMVH GSASNILQKP SKPAISTPPV ASKSAQARIG RPPVEGRGKG HLLPRYWPKY TDKEVQQISG NLNLNIVPLF EKTLSASDAG RIGRLVLPKA CAEAYFPPIS QSEGIPLKIQ DVRGKEWTFQ FRYWPNNNSR MYVLEGVTPC IQSMMLQAGD TVTFSRVDPG GKLIMGSRKA ANAGDMQGCG LTNGTSTEDT SSSGVTENPP SINGSSCPSL IPQELNGMPE NLSSQKSETN GGRIGDDPAR VKEKKRTRTI GAKNKRLLLH SEESMELRLT WEEAQDLLRP SPSAKPTIVV IEEKEIEEYD EPPVFGKRTI VTTRPSGEQE RWATCDDCSK WRRLPVDALL PFKWTCIDNV WDVSRCSCSA PEESLKELEN VLKVGREYKK RRTGESQAAK SQQEPCGLDA LASAAVLGDT IGEPEVATTT RHPRHRAGCS CIVCIQPPSG KGRHKPTCGC TVCSTVKRRF KTLMMRRKKK QLERDVTAAE DKKKKDMELA ESDKSKEEKE VNTARIDLNS DPYNKEDAEA VAVEKEESRK RAIGQCSGVV AQGAGDVLGV TELEGEAKKV GEEPRVSS // ID D7LCR3_ARALL Unreviewed; 333 AA. AC D7LCR3; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH57008.1}; GN ORFNames=ARALYDRAFT_901324 {ECO:0000313|EMBL:EFH57008.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH57008.1; -; Genomic_DNA. DR RefSeq; XP_002880749.1; XM_002880703.1. DR EnsemblPlants; scaffold_400825.1; scaffold_400825.1; scaffold_400825.1. DR GeneID; 9314997; -. DR Gramene; scaffold_400825.1; scaffold_400825.1; scaffold_400825.1. DR KEGG; aly:ARALYDRAFT_901324; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 200 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 200 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 38645 MW; 31AA443F23E9BFA6 CRC64; MVNQHFFKPL LPGFHSHLTA ELRSDASKKT WKVKIDGQRL TNGWTEFALA HDLRIGDIIV FRQERSMTFH VTMLGPSCYE IQYVSCLDNQ NNLGKIQRKK KEAESSLDLS CFIANVTPSN LRYDSLDKWS RQKMWRYDSD QRKGRSWTVA LKRKKSCGTT YIRRGWRSFC HANGLRAGSF FTFKLIERGG TLGLRLSHRE LDEEANAIDN NQDERSSRHV KASSLPPQNR FVRVTPTPYN VGQSKLILPV PFTKVNDIIK AKKMSFLDKH GVKWSTNLWF EEKCKRMRLS GGWKEFCYAN DVKIGESIIL ELIWETDRSS VLKFCSKVKP ENK // ID D7LCS6_ARALL Unreviewed; 529 AA. AC D7LCS6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 37. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH57018.1}; GN ORFNames=ARALYDRAFT_901333 {ECO:0000313|EMBL:EFH57018.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH57018.1; -; Genomic_DNA. DR RefSeq; XP_002880759.1; XM_002880713.1. DR EnsemblPlants; scaffold_400834.1; scaffold_400834.1; scaffold_400834.1. DR GeneID; 9316826; -. DR Gramene; scaffold_400834.1; scaffold_400834.1; scaffold_400834.1. DR KEGG; aly:ARALYDRAFT_901333; -. DR OrthoDB; EOG09360DGU; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001810; F-box_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00646; F-box; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF81383; SSF81383; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 458 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 458 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 529 AA; 60080 MW; C8D9FA15B148E06B CRC64; MAEPEIEKMT SSVSKLQLSP PPSVRKEKTF SMPDWSLLPE ELLNLISKHL EDYCFDVVHA RSVCTLWRSI FPFPASLLRP SYSLPSLTKF PYESKDLCTL EKIPLFLFRV RAPHADASEY FLGGIGRDDD DHIELPSPLQ CSVKVKIPDS DPTLINTLDC QVLSLGHQYR MIGCNPKYYK GVAFLPLNKF GGGEEFVVLL NYTKTLLVLR SIEMRWMLLE IPSYGSCSDL ITFRGRFYAA FSNHDIFAID PYSLEATPLM PSEALLDCGS VNDLVPSGND ELFLVEKIIP RTGVIYLYRL TLRLSRLDEE AGKWVEVSEI GDRLLVIGNL GNVCCSAKEL PDGCGLTGNS IVFTHGRKVT YSYKYGVHTG REEDDLNCWR YSRDKCVTIL STSPVVALRK VKDLGILRMA KQHFFKPLLP GFYSHLIDGQ RLTDGWKEFA LSHDLLTLLF SDKREICVST LQCWDLVVVR FNMTLPIPFT KVNGIQNAKK MSFLDKHGVK WSTSLRLEKD RQRMRLVGGW KEFCDVKIG // ID D7LE94_ARALL Unreviewed; 535 AA. AC D7LE94; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH57074.1}; GN ORFNames=ARALYDRAFT_901447 {ECO:0000313|EMBL:EFH57074.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH57074.1; -; Genomic_DNA. DR RefSeq; XP_002880815.1; XM_002880769.1. DR EnsemblPlants; scaffold_400948.1; scaffold_400948.1; scaffold_400948.1. DR GeneID; 9315064; -. DR Gramene; scaffold_400948.1; scaffold_400948.1; scaffold_400948.1. DR KEGG; aly:ARALYDRAFT_901447; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 129 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 129 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 535 AA; 60733 MW; 9A2A49F9645DC58E CRC64; MANQHFFKPL LPGFHSHLTI PVAFFFKNIE GRNEQKTAEL RSDASNKTWK VKIDGQRLTN GWRDFALAHD LRIGDIIVFR QERDMTFHVT MLGPSCCEIQ YVSCLDNQNN RGTIQRKKKK AESSLDLSCF VANVTPSNLR YDSLNLPMCF VRANGLDNRC GEMILINEKG RSWTVALKRK KSCATTYIRR GWRNFCNANG LRAGSFFTFK LIERGGTLGL RLAHRELEEE GNAIDNNQDK RSSRECTKKK ILIWKASSLP SQNRFVTVTL TPYNVGQSKL WSTNLWFEEK CKRMRLSGGW KEFCYANGVK IGESIILEFL WEADRSSVLK FCSKDPRVFN TDEMRWMLLE KPSYASCSDL ITFRGRFYAA FFNHGIFAID PYSLEVTPLI PSELLNSGSV NDLVPSGNDA LFLVEKIIPR TGVLYFSRLT LRVSMLDEEA GKWVEVSEIG DRLLVIGDLG NVCCSAKELP DGCGLSGNSI VFTHGPGNVT YSYKYGVHTG REEDDLNCWR YSREKPVTIL STSPVVALRV ESAKL // ID D7LEK5_ARALL Unreviewed; 600 AA. AC D7LEK5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 48. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_904120 {ECO:0000313|EMBL:EFH56509.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56509.1; -; Genomic_DNA. DR RefSeq; XP_002880250.1; XM_002880204.1. DR STRING; 59689.scaffold_403621.1; -. DR EnsemblPlants; scaffold_403621.1; scaffold_403621.1; scaffold_403621.1. DR GeneID; 9316317; -. DR Gramene; scaffold_403621.1; scaffold_403621.1; scaffold_403621.1. DR KEGG; aly:ARALYDRAFT_904120; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0009506; C:plasmodesma; IEA:EnsemblPlants. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 489 581 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 67157 MW; D0F16B336DB7B195 CRC64; MANVDADFRT SRSNDDQLYS ELWKACAGPL VEVPRSNERV FYFPQGHMEQ LVASTNQGVV DQEIPVFNLP PKILCRVLSV MLKAEHETDE VYAQITLQPE EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF LRGQTGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMV AMKNGFSLGM RFRMRFEGEE SPERIFTGTI VGSGDLSSQW PASKWRSLQI QWDEPSSIPR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPIEITGSP AASNFLSSFP QSHESNPSVK LLFHDIATER NSNKSVFSSG LQCKKTEAPV TSCCRLFGFD LTSKPASAPI PCNKQLISVD SNISDSTPKC QDPNSSNSPK EQKQQTSTRS RIKVQMQGTA VGRAVDLTLL RSYDELIKEL EKMFEIEGEL SPKDKWTIVF TDDEGDMMLV GDDPWNEFCK MAKKLFIYPS DEVKKLSSKS LLPDEGTIVY LESDQRTVHV // ID D7LF95_ARALL Unreviewed; 311 AA. AC D7LF95; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH56530.1}; GN ORFNames=ARALYDRAFT_483854 {ECO:0000313|EMBL:EFH56530.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56530.1; -; Genomic_DNA. DR RefSeq; XP_002880271.1; XM_002880225.1. DR EnsemblPlants; fgenesh2_kg.4__2914__AT2G46870.1; fgenesh2_kg.4__2914__AT2G46870.1; fgenesh2_kg.4__2914__AT2G46870.1. DR GeneID; 9316338; -. DR Gramene; fgenesh2_kg.4__2914__AT2G46870.1; fgenesh2_kg.4__2914__AT2G46870.1; fgenesh2_kg.4__2914__AT2G46870.1. DR KEGG; aly:ARALYDRAFT_483854; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 311 AA; 34959 MW; A07C3D941D8A6402 CRC64; MTDLSLTRDE DEEEEAKPLE EEGAGTREVA EREHMFDKVV TPSDVGKLNR LVIPKQHAER FFPLDSSSNE KGLLLNFEDL TGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRCVGDSGR DSRLFIDWRR RPKVPDHPHF AAGAMFPRFY SFPSTSYNLY NHQQQRHHHG GGYNYHQIPR EFGYGYFVRS VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGGASS SSFFQLRLGS SSEDDHFTKK GKSSLSFDLD Q // ID D7LGF8_ARALL Unreviewed; 588 AA. AC D7LGF8; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 50. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_902476 {ECO:0000313|EMBL:EFH57572.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH57572.1; -; Genomic_DNA. DR RefSeq; XP_002881313.1; XM_002881267.1. DR STRING; 59689.scaffold_401977.1; -. DR EnsemblPlants; scaffold_401977.1; scaffold_401977.1; scaffold_401977.1. DR GeneID; 9317380; -. DR Gramene; scaffold_401977.1; scaffold_401977.1; scaffold_401977.1. DR KEGG; aly:ARALYDRAFT_902476; -. DR KO; K14486; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010582; P:floral meristem determinacy; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 588 AA; 64539 MW; 28E1870CCE47E464 CRC64; MGGLIDLNVM ETEEDETQTQ TPSGSVSPTS SSSAASASVV SSSSGGGGVC LELWHACAGP LISLPKRGSL VLYFPQGHLE QAPDFSAAIY GLPPHVFCRI LDVKLHAETT TDEVYAQVSL LPESEDIERK VREGIIDVDG GEEDYEVLKR SNTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSQ PRPSQELLAR DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGDDGK LRLGVRRASQ IEGTLMPYRP IVFSAFTTTN HNWASWSNFI IPAPKFLKIV DYPFCIGMRF KARVESEDAS ERRSPGIITG ISDLDPIRWP GSKWRCLLVR WDDIEANGHQ QRVSPWEIEP SGSISNSGSF VTTGPKRSRI GFSSGKPDIP VSEGIRATDF EESLRFQRVL QGQEIFPGFI NTCSDGGAGA RRGRFKGTEF GDSYGFHKVL QGQETVPAYA ITDHPQHGLS QRNIWCGPFQ NFSTRILPPS VSSSPSSVLI TNSNSPNGRL EDHHGGPGRC RLFGFPLTNE TTAVASATVV PCVEGNSIKG ASAVQSNHHH SQGRDIYAMR DMLLDIAL // ID D7LHN6_ARALL Unreviewed; 697 AA. AC D7LHN6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_481671 {ECO:0000313|EMBL:EFH57191.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH57191.1; -; Genomic_DNA. DR RefSeq; XP_002880932.1; XM_002880886.1. DR STRING; 59689.fgenesh2_kg.4__731__AT2G28350.1; -. DR EnsemblPlants; fgenesh2_kg.4__731__AT2G28350.1; fgenesh2_kg.4__731__AT2G28350.1; fgenesh2_kg.4__731__AT2G28350.1. DR GeneID; 9316999; -. DR Gramene; fgenesh2_kg.4__731__AT2G28350.1; fgenesh2_kg.4__731__AT2G28350.1; fgenesh2_kg.4__731__AT2G28350.1. DR KEGG; aly:ARALYDRAFT_481671; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0048589; P:developmental growth; IEA:EnsemblPlants. DR GO; GO:0010154; P:fruit development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0048441; P:petal development; IEA:EnsemblPlants. DR GO; GO:0031540; P:regulation of anthocyanin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009743; P:response to carbohydrate; IEA:EnsemblPlants. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0048442; P:sepal development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 673 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 547 574 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 697 AA; 76935 MW; BDD433F359E174AC CRC64; MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP SSDVNVNGNG NEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYTA EPPVQTVIAK DIHGETWKFR HIYRGTPRRH LLTTGWSTFV NQKKLIAGDS IVFLRSESGD LCVGIRRAKR GGLGSTGLGS DNPYPGFSGF LRDDETSTTS KLMMMKRNGN DGNAAAGGRV RVEAVAEAVA RAACGQAFEV VYYPRASTPE FCVKAADVRS AMRIRWCSGM RFKMAFETED SSRISWFMGT VSAVQVADPI RWPNSPWRLL QVAWDEPDLL QNVKRVSPWL VELVSNMPAI HLSPFSPRKK IRIPQPFEFP FDGTKFPIFS PGFANNGGGE SMCYLSNDNN NAPAGIQGAR QAQQLFGSPS PSLLSDLNLS SYSSNKLQSP AMFLSGFNPR HHYDNIVSRQ ARDTENSNNI SCSLTIGNPA MVQDKKKSGG SVKTHQFLLF GQPILTEQQV MNRKRSLEEE AEAQEEKSSA ARGLTWNYGF QGLETGHCKV FMESEDVGRT LDLSVIGSYQ ELYRKLAEMF HIEERSDLLT HVVYRDANGA IKRIGDEPFS DFMKSTKRLT IKMDIGGDNV RKTWITGIRT GENGIDATKT GPLSIFA // ID D7LHU8_ARALL Unreviewed; 290 AA. AC D7LHU8; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH55804.1}; GN ORFNames=ARALYDRAFT_482495 {ECO:0000313|EMBL:EFH55804.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH55804.1; -; Genomic_DNA. DR RefSeq; XP_002879545.1; XM_002879499.1. DR EnsemblPlants; fgenesh2_kg.4__1555__AT2G35310.1; fgenesh2_kg.4__1555__AT2G35310.1; fgenesh2_kg.4__1555__AT2G35310.1. DR GeneID; 9317454; -. DR Gramene; fgenesh2_kg.4__1555__AT2G35310.1; fgenesh2_kg.4__1555__AT2G35310.1; fgenesh2_kg.4__1555__AT2G35310.1. DR KEGG; aly:ARALYDRAFT_482495; -. DR OrthoDB; EOG093615KU; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 33626 MW; 8BBE1C20AC1E530B CRC64; MARNSDYDMC KEERKRESFF KVLQRVDFSS ENLRALPYDF VRSFSNNELS GKMKIKARWG SSWEVEICKN PRFYFMEKSG WVKFVRDNAL GDNEFLTFTH KGKMRFTVNI FKQDGKEMLQ PPQSMASMAS SRRRRTKTEQ GISYLATTIT AESNGGENYT RKLNFEKKKA AESQNSKRTE KVFSVRRDSA GASSSSVAEF TTFIKKSYLI FMRIPKSVQS IHMPMQRTIF KIHLPNMKKS WNVVYLVADR GASFSGGWKR LAQEYPVAVG DTCKFSFIKQ HELILFVSKP // ID D7LIB2_ARALL Unreviewed; 1609 AA. AC D7LIB2; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 39. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH56863.1}; GN ORFNames=ARALYDRAFT_481325 {ECO:0000313|EMBL:EFH56863.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56863.1; -; Genomic_DNA. DR RefSeq; XP_002880604.1; XM_002880558.1. DR EnsemblPlants; fgenesh2_kg.4__385__AT2G24650.1; fgenesh2_kg.4__385__AT2G24650.1; fgenesh2_kg.4__385__AT2G24650.1. DR GeneID; 9316671; -. DR Gramene; fgenesh2_kg.4__385__AT2G24650.1; fgenesh2_kg.4__385__AT2G24650.1; fgenesh2_kg.4__385__AT2G24650.1. DR KEGG; aly:ARALYDRAFT_481325; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 12. DR Gene3D; 2.40.330.10; -; 12. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 11. DR SMART; SM01019; B3; 12. DR SUPFAM; SSF101936; SSF101936; 12. DR PROSITE; PS50863; B3; 12. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 130 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 370 466 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 659 738 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 802 897 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 926 1021 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1050 1148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1168 1215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1250 1347 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1358 1455 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1509 1606 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 130 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 370 466 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 659 738 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 802 897 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 926 1021 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1050 1148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1168 1215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1250 1347 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1358 1455 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1509 1606 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1609 AA; 182342 MW; 064D6C1EAD738A7A CRC64; MATFYPQFFH TLVPSFLTHF MIPEDFFLKY IEGTSFAELK SDVSDRTWKV KMSDRRITDG WEDFVVANDF RIGDVVVFRY VGDLVFHVSN LGPNYSEIQD NEEVPREKKA KTNSGEAEAV SSSSSADNSC FVALITALNL TIDTLYLPLH FTSSNGLTRK NSEIVLTDGG ERSWVLDLRF DESSHTFYIS RGWRNFCDEN GQKAGDFFMF KLVGNGEKLV LSFQNIARED SKDECSSLDS LMDIEKKKYS AKRRGSPYSS YSPSHKQFVT FTLPPDYARI GRLSLSAPFV RENGINKPGE ICLLDKHGRK WLTNLLLDSK GTMSLGKGWK DFVKANSLET GFTLKLKWEE TTPVLSLCYA ESNSDREQEE FSKAIEKRSL FMDTKYLPPH FTSSNGLTRK CHKIVLRDGG ERSWELDLKF NESSDTFYIS QGWRNFCDEN GQKAGGFFMF KLVGNGETLV LSFRPTKSIN DGRQRYCSEA SRRESVATKL SSEEENITWE GSKDECSTLE SLMEKEKKKY SLKPRGSPHS SYSPCHKRFV TFTLPPDYAR IGRLVSLSET TLDSISFDAC LFGFCSNIYR VFRHRSLGRM ALTSLVRYFF WINMVEGDTS NRDKINNNEN NKDESRSWER KKNHPKWRDS TPSTQKQYVT LTITPFRRLS KIFTRENDIN KPGKITLLGK DGIKQQTNLL FDKTNGSMSL GSGWKDFVKD NGLKTGDSFT LKLIWEDQTP VLSLCPAECS IDREAGGTNQ KKSLPIEPSI CTKVSKDVNI KEKNNKEESR SVDRERNHLR ETDVTPSSQK HVVTLTITPS SVKRDRLILS AQFARENNIN KPGTIYLLDR DGTKSLINLQ QDKRGTMSLG KGWKEFAEAN DIKLGESFMM KLVWEGTIPM LSLLRTEFSS SKANKKESIS SEPKSRDSSP IIKNRFVTPA LTPEDVKSCK LILTAQFARE NNINKPGTLY LLDRDGTKWL TTVKRDNKGT MSLGNGWKEF AETNDLKLGD SFRMELIWED TTPILSLLRT KFSSSKSNKE ESISSEPKSR DSSQTIENRF VTLALTPEDV KACKLILPSQ FMKANGISNK LGKITLLGEN KVEWPGYLLS RDGTVALGNG WEGFCEANGV KLGHSFTLEF VNEQDTTPTI PVVFFLKHIE GRDDQKMAEL RSDASKITWK VKIDGQRLTD GWKEFALAHD LRIGDIVIFR QESDLSFHVT LLGPSCCEIQ YGSCLDEETN LEKKKNPNGE AETSSLGRSC FVAKVAPSSL SYDSMHLPRP FVRENGVVTG SGEIVLMNEK GRSWKLKLRQ KPSCGTVYVK GGWVSFCDAN GLRAGDIYTF KLIQRGGTLV LRLLPNEEAE SSSLDPSCFV ANVAPSSLRY DTLYLPRRFM RENGLDKRCG KMILMNEKGK SWTLDLKQKK SCGTSLIKRG WSSFCRANGL RAGSIITFKL IKKGGNLVLR LLTNEPKEED ECSEANEVES LSTDQESNEE SHDEKISRRK EKKGNLMWKA SSSPSENRFV TLTLTPYNIL RSVLRLPIPF TRMNGINEDT KMTLLDKHGT KWLTTLRLVD YKSKRLRMAG GWQGFIQANC VKANESIMLE LIWEEDTSCI LKFCSKVKL // ID D7LIB4_ARALL Unreviewed; 777 AA. AC D7LIB4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH56864.1}; GN ORFNames=ARALYDRAFT_667769 {ECO:0000313|EMBL:EFH56864.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56864.1; -; Genomic_DNA. DR RefSeq; XP_002880605.1; XM_002880559.1. DR EnsemblPlants; Al_scaffold_0004_488; Al_scaffold_0004_488; Al_scaffold_0004_488. DR GeneID; 9314843; -. DR Gramene; Al_scaffold_0004_488; Al_scaffold_0004_488; Al_scaffold_0004_488. DR KEGG; aly:ARALYDRAFT_667769; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 53 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 115 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 259 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 388 483 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 629 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 680 775 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 53 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 115 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 259 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 388 483 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 534 629 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 680 775 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 777 AA; 86969 MW; 525F7B5AA1E0B444 CRC64; MEASLLRRNT GGMCLGKGWK EFAMSNGLKS GESFTLEAIL ENGTPMLGLF STQSRSDRSQ QGEYSKHSEK ESIFVEHSSG KETRKAIINR DVRRDSYPAS RNPFVTLRLT YDNLRNSRRV SSSINPLIQR NLPLSFTREN GLDEPGIITL VGNDGTKLEA NLLRENTGIM CLGKGWKEFA MSNGLRSGEL FTLEAILENG IPMLSLVSTQ STRYRSQEGE CAKDSEKESI STVPSKGNKK RKATSKREEK RDSSSASQNR FVTFTPEDIR DCILYLPQDL TALIGLERKC REIVVTDERE RSWALELKFN KSSDTFYISR GWRSFCDEND KKAGGVFVFR LVGNRETPVL SFCSTESIKN NKENCMELER KKKHLKCIDS TSPSQNRFVT LSLSHDNLRT GTRHLPLSFA RDNGLDKPGI ITLVDKDGTK RKANLRREKT GKMFLGKGWK DFVIANGLKS SKSFTLEAVL ENGTHMLSLV SIQSTSDRSQ QGECSKDSKK ELISAVPSRG NKTRKAMNNR DVRRDSFPAS QNQFVTLSLS HDSLRKGRQY LPLSFTRENG LDEPGIITLV SKDGTKLEAS LLRENKGIMC LGKGWKEFAI ENGLKTGELF TLEAILEKGT PMLSLLSTES TSDRSQQGEC SKDSEKESIS AEPSKENKKK KATSNREERR DSSSAIQNRY VTLTLTPEDV SACKLILPSQ FMKANGINKL GKITLVGQNR TKWFAYLLSK NGIVALGSGW KGFCEANGVK TGESFTLEYI DEQDTTPVFK FWSNSVE // ID D7LIB5_ARALL Unreviewed; 680 AA. AC D7LIB5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 41. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH56865.1}; GN ORFNames=ARALYDRAFT_320274 {ECO:0000313|EMBL:EFH56865.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56865.1; -; Genomic_DNA. DR RefSeq; XP_002880606.1; XM_002880560.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_4000331; fgenesh1_pm.C_scaffold_4000331; fgenesh1_pm.C_scaffold_4000331. DR GeneID; 9316673; -. DR Gramene; fgenesh1_pm.C_scaffold_4000331; fgenesh1_pm.C_scaffold_4000331; fgenesh1_pm.C_scaffold_4000331. DR KEGG; aly:ARALYDRAFT_320274; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 673 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 578 673 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 680 AA; 76154 MW; C61CA27A34F71809 CRC64; MMIQVSDHHD NNIEFQRQKN SSETEADYSC FVTASSQQTD ALRLPMQFTR ENGINKPGKI YLLGKDGSKW LANLLSENNR GRMTLGDGWK SFVKANGLKT GDTYTFKLFW DDTIPVLSLC SEEYNTDTRV GEECSKESLP TEPSSQEKVV KDDNNKHESN KDESSLWKRE DNHLRCIDST SPSENRSLTL TITPDSLEHG RLRLPLQFMT ENNMNKPGEI TLLGKDGAKW MASLLLERRG RMSLGKGWKD FAKANGVKTG DSITLESIWE DTTPVLKLIS IESSSGQFSK ESLSVEPSSG NMTEKAEKNR EASRKYPPRS RESSSAIENQ FMALTPSCDI ISQVAHDLRI GEVIIFRHEG DNMLQVSDLG PNCCGILDVP APSSNNDHDN IEHPSKKKVK KNNPETEADY LSDHSCSVAH VTTSSLHANA LSLAVKESIT IEPSIDDNNK DESSKEENDI EEKSNNKNNI EESSSFEREK NHRICIDSIS SSHNRFLTLT ITPDSLKHGR LRLPLQFMTE NSMNKPGEIT VLGKDGAKWL VSLLLERRGR MSLDASSGHK TREAEKNRDS SSEIENRFLT LTLAPEDVKD GNLHLPIQFM RINGINKPGK ITLLGRGGLK WFAYLLSRDG TVVLGNGWKG FCEANGVMLG ESFILEFISI EDTNHVFKFY SSYGDQIDKC // ID D7LIB6_ARALL Unreviewed; 333 AA. AC D7LIB6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH56866.1}; GN ORFNames=ARALYDRAFT_901025 {ECO:0000313|EMBL:EFH56866.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56866.1; -; Genomic_DNA. DR RefSeq; XP_002880607.1; XM_002880561.1. DR EnsemblPlants; scaffold_400526.1; scaffold_400526.1; scaffold_400526.1. DR GeneID; 9316674; -. DR Gramene; scaffold_400526.1; scaffold_400526.1; scaffold_400526.1. DR KEGG; aly:ARALYDRAFT_901025; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 37027 MW; FBB36CB790D68935 CRC64; MMFNVSACGL GELPTPSNNK IGNISRKQHQ RLRTEEGDDQ DKTVVLGRGK RIRKNNSQSE ASSSSSNKSN LNEDVLGDKK SFITLKLTND GHKKSRVGLP LPFMRANGLN KPGEIGMLAK DGKKLMVNLL KDVNGRMSLG RGWRDFALVN GFQIGESITL ELIWRDSNPM FRFSSTGTDS ECDQRQGEYC SQACEEEPIC IEPSGNRDKK EKNNIEDKKY SSLETLNRVL TLTLKPKDVK DCNLVSSSNK ILPSEFMRAY GIDKHMTITI LGKANMKWWG YPSSRDGTIA VGIGWANFCK ANGIETGNLF TLELVSEEVD TSPMFRICPN SGD // ID D7LIB9_ARALL Unreviewed; 410 AA. AC D7LIB9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH56867.1}; GN ORFNames=ARALYDRAFT_901028 {ECO:0000313|EMBL:EFH56867.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56867.1; -; Genomic_DNA. DR RefSeq; XP_002880608.1; XM_002880562.1. DR EnsemblPlants; scaffold_400529.1; scaffold_400529.1; scaffold_400529.1. DR GeneID; 9314845; -. DR Gramene; scaffold_400529.1; scaffold_400529.1; scaffold_400529.1. DR KEGG; aly:ARALYDRAFT_901028; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 161 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 308 404 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 161 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 308 404 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 46864 MW; 080100762890E6F9 CRC64; MFNVSACDIR DKPSPSNIEI KKLVLLEREK KVRKINSQSE ASTSSSDNSS FVALVKASNL EEDTLYLPQD CTRSNGLNRK CRKIVLTDGG SRSWEMELKF KKNLGSFYIT RGWRHFCDEN GKKAGSFFVF ELTIKEGTPL LYFSPSESTI NYTKLPTQKR FVTVRVVPDC LKRCRLYLSR RFLKNNGLGE TKMVTLLGTD GTRRLANLVR ETSGRMSLGR GWVEFVKANG LKIGQYFTLE SIWANDSPIL KLSSTNDSKS DKRKHRENFP VASHKEFVST EASDGNEPEK DMNTEEMINQ SSLIDNRFVI LALEPEDAKA GMLYLPSHFM KANGIDKIGK IYMLGTNEME WWWGNLLTRD GIVSVGCRWR YFCKSNGVKI GQYFKLEYMY KYDTRPVLKF VPSPGSKSYV // ID D7LIC1_ARALL Unreviewed; 543 AA. AC D7LIC1; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 41. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH56869.1}; GN ORFNames=ARALYDRAFT_344050 {ECO:0000313|EMBL:EFH56869.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56869.1; -; Genomic_DNA. DR RefSeq; XP_002880610.1; XM_002880564.1. DR STRING; 59689.fgenesh1_pg.C_scaffold_4000392; -. DR EnsemblPlants; fgenesh1_pg.C_scaffold_4000392; fgenesh1_pg.C_scaffold_4000392; fgenesh1_pg.C_scaffold_4000392. DR GeneID; 9316677; -. DR Gramene; fgenesh1_pg.C_scaffold_4000392; fgenesh1_pg.C_scaffold_4000392; fgenesh1_pg.C_scaffold_4000392. DR KEGG; aly:ARALYDRAFT_344050; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 275 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 448 542 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 275 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 448 542 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 543 AA; 61827 MW; 9E22AF679491A75D CRC64; MADPPLYSPI NPHFFQPLLP GFTNHLDIPV AFFLKHLVGS NKGTTAELRS DASEMTWRVK IDGRRLSNGW EDFTVAHDLR VGDIVVFRQE GELVFHVSAL GPSCCEIQYR DNYPEEDKIE KLCDTEKVSR KKNSLKREAD SAPEHSLGSC FVATVTASNL KRDTVYIPKG FALSNHLMNK FQIVLMNEEG ESWKIDLRRE TYSHGRFYMR RGWRSFCIAN GKKPGDSFAF KLVENEETPV LQLFPMTIED LDKLQSVPRE KSRKVEAPPS PDPSSFVATV TASNLSRDRL YLPKTFIMSN GLLKKFQMRL MNEEGESWTI DMKHEAHSGR FLTIRGWRSF CVANGKKPGD LFEFKLGQNE ETPVLQLVPL NSEDLHKLEP NNDTRQGKCL EATKKEFLCL QATKKKFLGE EVYRNDSFKA IDEDIRKGQC SKAIKQEYVS TEENNSTSQN RFVTLTLTPS SKLNLPVEFI KGNGINKAGK ITMLDRYDAK WPTSLLMDKR GTMSLGRGSK GFCEVNGVKM NESFVLELIW EDTVPLLKFC SKV // ID D7LIN5_ARALL Unreviewed; 236 AA. AC D7LIN5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH57685.1}; GN ORFNames=ARALYDRAFT_902720 {ECO:0000313|EMBL:EFH57685.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH57685.1; -; Genomic_DNA. DR RefSeq; XP_002881426.1; XM_002881380.1. DR STRING; 59689.scaffold_402221.1; -. DR EnsemblPlants; scaffold_402221.1; scaffold_402221.1; scaffold_402221.1. DR GeneID; 9317492; -. DR Gramene; scaffold_402221.1; scaffold_402221.1; scaffold_402221.1. DR KEGG; aly:ARALYDRAFT_902720; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0080167; P:response to karrikin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 27587 MW; D42D2821259D5B4A CRC64; MSINQYSSDF HYHSLMWQQQ QQHHHHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR ANGGRFFIGW RRRGDSSSSS DSNRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMVRFN // ID D7LIW0_ARALL Unreviewed; 595 AA. AC D7LIW0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH55041.1}; GN ORFNames=ARALYDRAFT_901047 {ECO:0000313|EMBL:EFH55041.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH55041.1; -; Genomic_DNA. DR RefSeq; XP_002878782.1; XM_002878736.1. DR EnsemblPlants; scaffold_400548.1; scaffold_400548.1; scaffold_400548.1. DR GeneID; 9314849; -. DR Gramene; scaffold_400548.1; scaffold_400548.1; scaffold_400548.1. DR KEGG; aly:ARALYDRAFT_901047; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 196 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 341 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 493 590 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 196 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 341 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 493 590 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 595 AA; 68129 MW; 5D619C44E3A901FD CRC64; MAPKKKTPTM VWRNRGNPEA NPRKCNMAKP AKDKNKSLLD CSPLLEELPQ SPDCKLKDLG ILRMAKQHFF KPLLPGFHSH LTIPVAFFLK NIEGRHEQKT AELRSDASKI TWEVKIDGQR LTDGWKEFAL SHDLRIGDIV VFRQERDMCF HVTMLGPSCC EIQYGSCLDN KNNLGKIQRK KNPRRETESS SLDPSCFVAN VTVSSLRDDR LNLPRSFVRE NGLDTRCGEI VLMNEKGRTW TLDLKGNKSY RTTYIKQGWR SFCHANGLRA GSIFTFKLIQ KGKTPVLRLS PKEPEEQANE VSLSPELESD EDTNLGKIQR RKKRKKNPSR DIESSSLDPS CFVAHITRSS LRYDILYLPK RFMRENGLDT RCGEMILMNE KGRSWALDLK RKNSCGTTYI KRGWRSFCRA NGLRAGSFYT FKLIQNERTL VLRLVPKEPE EEEEKANVES LSTEPSDEES SQDEKSSQEC SKTMEKKSIL IQKASSSASQ SRFVTVTLTL YNVSLSRLTL PIPFTKVNGI QNAKKMSFLD KHGVKWSTSL RFEQDRQRMR LVGGWKEFCD ANGVKIGESI MLELVLEADK SFVLKFCSKV MQEIK // ID D7LIX6_ARALL Unreviewed; 631 AA. AC D7LIX6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH56885.1}; GN ORFNames=ARALYDRAFT_901062 {ECO:0000313|EMBL:EFH56885.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348716; EFH56885.1; -; Genomic_DNA. DR RefSeq; XP_002880626.1; XM_002880580.1. DR EnsemblPlants; scaffold_400563.1; scaffold_400563.1; scaffold_400563.1. DR GeneID; 9316693; -. DR Gramene; scaffold_400563.1; scaffold_400563.1; scaffold_400563.1. DR KEGG; aly:ARALYDRAFT_901062; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 254 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 395 492 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 625 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 254 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 395 492 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 546 625 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 631 AA; 71982 MW; C8E8B74D36A9B1E9 CRC64; MAKPAKGKNK SLLDCSPLLE ELPQSPDCRN RGNPEANPRK CNMAKPAKDK NKSLLDCSPL LEELPQSPDC RNRGNPEANP RKCNMAKPAK DKNKSLLDCS PLLEELPQSP DCKLKDLGIL RMAKQHFFKP LLPGFHSHLT IPVAFFLKNI EGRHEQKTAE LRSDASKITW EVKIDGQRLT DGWKEFALSH DLRIGDIVVF RQERDMCFHV TMLGPSCCEI QYGSCLDNKN NLGKIQRKKN PRRETESSSL DPSCFVANVT VSSLRDDRLN LPRSFVRENG LDKRCVEIVL MNEKGRTWTL DLKGNKSYGT TYIKRGWRSF CHANGLRAGS IFTFKLIKKG KTPVLRLFSK EPEEQANEAS LSPELESNED SNLGKIQRRK NPSRETESSS LDPSCFVANI TRSSLRYDIL YLPKRFMRAN GLDTRCGEMI LMNEKGRSWA LDLKRKNSCG TTYIKRGWRS FCRVNGLRAG SFYTFKLIQN ERTLVLRLVP KEPEEEEEKA NVESLSTEPS DEESSQDEKS SQECSKTMEK KSILIHLRCL NLSQTLPIPF TKVNGIQNAK KMSFLDKHGV KWSTSLRFEQ DRQRMRLVGG WKEFCDANGV KIGESIMLEL IWESDKSSVL KFCSKVMQEI K // ID D7LN48_ARALL Unreviewed; 275 AA. AC D7LN48; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH52060.1}; GN ORFNames=ARALYDRAFT_323305 {ECO:0000313|EMBL:EFH52060.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348717; EFH52060.1; -; Genomic_DNA. DR RefSeq; XP_002875801.1; XM_002875755.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_5000849; fgenesh1_pm.C_scaffold_5000849; fgenesh1_pm.C_scaffold_5000849. DR GeneID; 9311869; -. DR Gramene; fgenesh1_pm.C_scaffold_5000849; fgenesh1_pm.C_scaffold_5000849; fgenesh1_pm.C_scaffold_5000849. DR KEGG; aly:ARALYDRAFT_323305; -. DR OrthoDB; EOG093615H8; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 275 AA; 31840 MW; 238D5A242731A153 CRC64; MEENSSQNEL LDTVQKFFRV YIPNQTADDM NLPLVLDKIS GKPLPRKVTV KSVSSGNIWR MEMKANGDTV FLRDGWKRIV KDENVTETIF LELEFDGSGV FHFCVYEYGS MCKRMRSPME KEVIKVDSTE EEIEEDVLVD DEESTKGLEE SPRRGGTSRR RENLKTDSHK FYEHLGNKLN PSFPVDMTQS RTRIPSLLIK DYNLTFPNMV IVRDKIGILK RRIAVWKNKS VYLNGISSII RRNHVKPGDE MVFELKMVNG YHGLVHEIKV HIIKA // ID D7LN55_ARALL Unreviewed; 108 AA. AC D7LN55; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH52063.1}; GN ORFNames=ARALYDRAFT_905889 {ECO:0000313|EMBL:EFH52063.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348717; EFH52063.1; -; Genomic_DNA. DR RefSeq; XP_002875804.1; XM_002875758.1. DR EnsemblPlants; scaffold_501593.1; scaffold_501593.1; scaffold_501593.1. DR Gramene; scaffold_501593.1; scaffold_501593.1; scaffold_501593.1. DR KEGG; aly:ARALYDRAFT_905889; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 108 AA; 12622 MW; CFA7F7BD1D6BE8CE CRC64; MDPNKMLEKV LTDSDLCHGA KLYLPKKQIE KILSTIENFA MPPSGFQVEL LDNNKSYSVT IKKDSRRYYM CSGWTEIREA RNLKTGDKIR LYLQDTKFIF TFNYALSL // ID D7LQT8_ARALL Unreviewed; 333 AA. AC D7LQT8; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH51532.1}; GN ORFNames=ARALYDRAFT_484335 {ECO:0000313|EMBL:EFH51532.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348717; EFH51532.1; -; Genomic_DNA. DR RefSeq; XP_002875273.1; XM_002875227.1. DR STRING; 59689.fgenesh2_kg.5__327__AT3G25730.1; -. DR EnsemblPlants; fgenesh2_kg.5__327__AT3G25730.1; fgenesh2_kg.5__327__AT3G25730.1; fgenesh2_kg.5__327__AT3G25730.1. DR GeneID; 9312996; -. DR Gramene; fgenesh2_kg.5__327__AT3G25730.1; fgenesh2_kg.5__327__AT3G25730.1; fgenesh2_kg.5__327__AT3G25730.1. DR KEGG; aly:ARALYDRAFT_484335; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 180 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 180 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 37592 MW; 692E1B31B39361B5 CRC64; MDAMSSVDES STTTDSVPAR KSSSPASLLY RMGSGTSVVL DSENGVEAES RKLPSSRFKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAH RFRGRDAVTN FKETTFDDDE VDFLNAHSKS EIVDMLRKHT YKEELEQRKR NRNGNGNKTT EFGSVTVAVI TGFKTSELLF EKTVTPSDVG KLNRLVIPKH QAEKHFPLPL GNNNVSVKGI LLNFEDVNGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKRL CAGDLISFKR SNGQDQKLFI GWKSKFGSGS DQETGRVVRL FGVDISLNDV VVLKEATEVF SSLRCNKKKQ RVL // ID D7LR96_ARALL Unreviewed; 314 AA. AC D7LR96; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH53251.1}; GN ORFNames=ARALYDRAFT_484455 {ECO:0000313|EMBL:EFH53251.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348717; EFH53251.1; -; Genomic_DNA. DR RefSeq; XP_002876992.1; XM_002876946.1. DR STRING; 59689.fgenesh2_kg.5__447__AT3G26790.1; -. DR EnsemblPlants; fgenesh2_kg.5__447__AT3G26790.1; fgenesh2_kg.5__447__AT3G26790.1; fgenesh2_kg.5__447__AT3G26790.1. DR GeneID; 9311411; -. DR Gramene; fgenesh2_kg.5__447__AT3G26790.1; fgenesh2_kg.5__447__AT3G26790.1; fgenesh2_kg.5__447__AT3G26790.1. DR KEGG; aly:ARALYDRAFT_484455; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010373; P:negative regulation of gibberellin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0010116; P:positive regulation of abscisic acid biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0008284; P:positive regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0010262; P:somatic embryogenesis; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 35605 MW; 3CC607D2A2D57367 CRC64; MMVDENVETK ASTLVASVDH DHHGFGSGSG HDHHGLSASV PLLGVNWKKR RMPRQRRSSS SFNLLSFPPP MPPISHVQTP LPARKIDPTK LRFLFQKELK NSDVSSLRRM ILPKKAAEAH LPALECKEGI PIRMEDLNGL HVWTFKYRYW PNNNSRMYVL ENTGDFVNAH GLQLGDFIMV YQDLYSNNYV IQARKASEEE GDVTNVEEDD VYTNLTRIEN TVVNDLLLQD FNHHNTNNNN NNNNSNKCSY YYPIIDDVTT TTGSFVYDTT ALTSNDTPLD FLGGHTTTTN NYYSKFGTFD GLGSVENISL DDFY // ID D7LSP8_ARALL Unreviewed; 608 AA. AC D7LSP8; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 48. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_349241 {ECO:0000313|EMBL:EFH52899.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348717; EFH52899.1; -; Genomic_DNA. DR RefSeq; XP_002876640.1; XM_002876594.1. DR STRING; 59689.fgenesh1_pg.C_scaffold_5002633; -. DR EnsemblPlants; fgenesh1_pg.C_scaffold_5002633; fgenesh1_pg.C_scaffold_5002633; fgenesh1_pg.C_scaffold_5002633. DR GeneID; 9314485; -. DR Gramene; fgenesh1_pg.C_scaffold_5002633; fgenesh1_pg.C_scaffold_5002633; fgenesh1_pg.C_scaffold_5002633. DR KEGG; aly:ARALYDRAFT_349241; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 503 584 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 608 AA; 68551 MW; 4BB0944FC28A6B7D CRC64; MASAEGDDDF GSSSSRFYQD QLYTELWKVC AGPLVEVPRA DERVFYFPQG HMEQLVASTN QGIKSEEIPV FDLPPKILCR VLGITLKAEH ETDEVYAQIT LQPEEDQSEP TSLDPPLVEP TKQMFHSFVK ILTASDTSTH GGFSVLRKHA TECLPALDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF EGEESPERIV LDSETWSVFR FTGTIVGTGD LSSQWPASKW RSLQVQWDEP TTVQRPDKVS PWEIEPFLAT SPISTPAQQP QLKCKRSRPT EPSVITPAPP SFLYSLPQSQ DSINASLKLF QDPSLERNSG GYSSNNSFKP ETPPPPPRPT NCSYRLFGFD LTSNPPAPLP QDKQPMDTCG AAKCQEPITP TSMNEQKKQQ TSRSRTKVQM QGIAVGRAVD LTLLKSYDEL IEELEEMFEI QGQLRPRDKW IVVFTDDEGD MMLAGDDPWN EFCKMAKKIF IYSSDEVKKM ATKLKISSSL ENEEYGNE // ID D7LSR4_ARALL Unreviewed; 304 AA. AC D7LSR4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH52908.1}; GN ORFNames=ARALYDRAFT_486704 {ECO:0000313|EMBL:EFH52908.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348717; EFH52908.1; -; Genomic_DNA. DR RefSeq; XP_002876649.1; XM_002876603.1. DR EnsemblPlants; fgenesh2_kg.5__2696__AT3G61970.1; fgenesh2_kg.5__2696__AT3G61970.1; fgenesh2_kg.5__2696__AT3G61970.1. DR GeneID; 9312717; -. DR Gramene; fgenesh2_kg.5__2696__AT3G61970.1; fgenesh2_kg.5__2696__AT3G61970.1; fgenesh2_kg.5__2696__AT3G61970.1. DR KEGG; aly:ARALYDRAFT_486704; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:1901371; P:regulation of leaf morphogenesis; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 34578 MW; 175E7AAF05C9D19A CRC64; MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDNN KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRDSGNKDK LYIDWRRRPK IPDHHHHHHQ FAGAMFPRFY TFPHPQMPTN YESHNLYHRF HQRDLGIGYY VRSMERSNPT AVIESVPVMM QRRAQVASMA SRGEKRLRLF GVDMECGGGG GGGGSVNSTE EESSSSGGSM PRGGVSMVGA GSLLQLRLVS SDDESLVAME AASLEDHHFF TKKGKSSLSF DLDR // ID D7LUG9_ARALL Unreviewed; 273 AA. AC D7LUG9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH54170.1}; GN ORFNames=ARALYDRAFT_906718 {ECO:0000313|EMBL:EFH54170.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348717; EFH54170.1; -; Genomic_DNA. DR RefSeq; XP_002877911.1; XM_002877865.1. DR EnsemblPlants; scaffold_502422.1; scaffold_502422.1; scaffold_502422.1. DR GeneID; 9312269; -. DR Gramene; scaffold_502422.1; scaffold_502422.1; scaffold_502422.1. DR KEGG; aly:ARALYDRAFT_906718; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 31165 MW; 1ADFCD0EFFA95313 CRC64; MADNSDLYPR FFKVFLSETA SDSLVIPLSF NEFLADPLPK TVKLQGIGGK IWTVSLEKIS GAVYFATGWS KFAKDHELKN GEFMTFVYDG HRTFEVSVFE RFGFKETRAE IQAIQLSDSH SDSVVEEEED SSDVDDGSCG EDEEISQSLY PIDDEETKTD AAVFEGNLDI EALTNPHFPT RLKNRIYELL IPANVVNDNK LKFGDSIKYI DGEGTLIGLK GKWADKRICF KGWDRICRRN RLKKHQDTVE CELLHDDQKM VHSIRVHVLR RTD // ID D7LXQ0_ARALL Unreviewed; 308 AA. AC D7LXQ0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH50124.1}; GN ORFNames=ARALYDRAFT_350906 {ECO:0000313|EMBL:EFH50124.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH50124.1; -; Genomic_DNA. DR RefSeq; XP_002873865.1; XM_002873819.1. DR EnsemblPlants; fgenesh1_pg.C_scaffold_6001499; fgenesh1_pg.C_scaffold_6001499; fgenesh1_pg.C_scaffold_6001499. DR GeneID; 9307863; -. DR Gramene; fgenesh1_pg.C_scaffold_6001499; fgenesh1_pg.C_scaffold_6001499; fgenesh1_pg.C_scaffold_6001499. DR KEGG; aly:ARALYDRAFT_350906; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009567; P:double fertilization forming a zygote and endosperm; IEA:EnsemblPlants. DR GO; GO:0009553; P:embryo sac development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 215 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 215 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 35654 MW; 746E209434634F80 CRC64; MVRNGVFGQV MEERDNPAFF KILRREDFSS EMMRMIPHHL IRSISDKSSS FKMVLRVPWG SSWQVKISKN PIFHYMEDRG WNQFVNDNGL GLNEFLTFTH EANMCFNVTI FEADGTEMLR PRQPSTIASS SGRNKREEKK SIYIDVKKEE EIESWSESSY AGHKTAESTS GRLKQKQELN LRKKEADKTE KSKKRKKKKV DTVCNDSEAG TSSLVPEFKL TIKKSHLLFL GIPKKFVDMH MPSETKMFKI HHPRGKKSWE VWYVVNDVQS RFSGGWSRLA KELGLVVGDV CTFELIKPTE MCVKVSKE // ID D7LXR4_ARALL Unreviewed; 288 AA. AC D7LXR4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH48059.1}; GN ORFNames=ARALYDRAFT_488674 {ECO:0000313|EMBL:EFH48059.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH48059.1; -; Genomic_DNA. DR RefSeq; XP_002871800.1; XM_002871754.1. DR EnsemblPlants; fgenesh2_kg.6__1808__AT5G18090.1; fgenesh2_kg.6__1808__AT5G18090.1; fgenesh2_kg.6__1808__AT5G18090.1. DR GeneID; 9307869; -. DR Gramene; fgenesh2_kg.6__1808__AT5G18090.1; fgenesh2_kg.6__1808__AT5G18090.1; fgenesh2_kg.6__1808__AT5G18090.1. DR KEGG; aly:ARALYDRAFT_488674; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 196 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 196 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 288 AA; 33176 MW; 3551D503775159D0 CRC64; MKNRAFGQIM DDAENPGFFK ILRPADLSSE IMRGIPLNFI KSISDEEFSH KMVLKVSWGS SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NNEFLTFTHQ GNMCFSVDIY QIDGKELLTP RRSATIASSS GRNKREQRKN IYEDVKKEEE IESWSESSYP GLKAAESTGR RQKHVTKKKK KMTMCNDSED DNVSLVPEFT LTIKKSYLFF LGVPKMFEEL HMPREATMFK IHDPEGKRSW DVMYKLAGTQ SRFCAGWIRL AKELGLVIGD VCTFTLIKPT EMLVKVSK // ID D7LZ54_ARALL Unreviewed; 275 AA. AC D7LZ54; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH49503.1}; GN ORFNames=ARALYDRAFT_487432 {ECO:0000313|EMBL:EFH49503.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH49503.1; -; Genomic_DNA. DR RefSeq; XP_002873244.1; XM_002873198.1. DR STRING; 59689.fgenesh2_kg.6__566__AT5G06250.2; -. DR EnsemblPlants; fgenesh2_kg.6__566__AT5G06250.2; fgenesh2_kg.6__566__AT5G06250.2; fgenesh2_kg.6__566__AT5G06250.2. DR GeneID; 9307277; -. DR Gramene; fgenesh2_kg.6__566__AT5G06250.2; fgenesh2_kg.6__566__AT5G06250.2; fgenesh2_kg.6__566__AT5G06250.2. DR KEGG; aly:ARALYDRAFT_487432; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 275 AA; 30630 MW; 3C679972A1C0DF4F CRC64; MSVNHYSTDH HHTLLWQQQH RHTTDTTETT TTATWLHDDL KESLFEKSLT PSDVGKLNRL VIPKQHAEKY FPLNAVVVSS AATDTSSSEK GMLLSFEDES GKSWRFRYSY WNSSQSYVLT KGWSRFVKDK QLDPGDVVFF QRHRSDSRRL FIGWRRRGQG SSSAAATNSA VNMSSMGALS YHQIHATSNY SNPPSHSEYS HYGAAVATAA ETHSTPSSSV VGSSRTVRLF GVDLECQMDE NDGDDSVTAA ATTVDLPMVT TAKTCTIITL ILIIW // ID D7M044_ARALL Unreviewed; 1168 AA. AC D7M044; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_488981 {ECO:0000313|EMBL:EFH50271.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH50271.1; -; Genomic_DNA. DR RefSeq; XP_002874012.1; XM_002873966.1. DR STRING; 59689.fgenesh2_kg.6__2115__AT5G20730.1; -. DR EnsemblPlants; fgenesh2_kg.6__2115__AT5G20730.1; fgenesh2_kg.6__2115__AT5G20730.1; fgenesh2_kg.6__2115__AT5G20730.1. DR GeneID; 9308026; -. DR Gramene; fgenesh2_kg.6__2115__AT5G20730.1; fgenesh2_kg.6__2115__AT5G20730.1; fgenesh2_kg.6__2115__AT5G20730.1. DR KEGG; aly:ARALYDRAFT_488981; -. DR KO; K14486; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1041 1125 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 514 541 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1168 AA; 129504 MW; C41658A4013B311D CRC64; MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR WAAPAEFVVP LAKYTKAMYA QVSLGMRFRM IFETEECGVR RYMGTVTGIS DLDPVRWKNS QWRNLQIGWD ESAAGDRPSR VSVWDIEPVL TPFYICPPPF FRPRFSGQPG MLDDETDMES ALKRAMPWLD NSLEMKDPSS TIFPGLSLVQ WMNMQQQNGQ LPSAATQPGF FPSMLSPTAA LHNNLGGTDD PSKLLSFQTP QGGISSSNLQ FNKPNPQAPM SQLPQPPTTL SQQQQLQQLL HSSLNHQQQH QQQQQQQLQQ QQQQLQSQQH SNNNQSHSQQ QQQLLQQQQQ QLLQQQNQQP LQQQTQQQQQ QQLRTQPLQS HSHHQPQPQQ LQQHKLQQQL QLPQNQLYNG QQAAQQLQVQ QVSTHHLQPQ LVSGSMASSV ITPPPSSLNQ SFQQQQQSKQ LPQAHHLLGA STSQSSVIET SKSSSNLMSA PPQETQFPRQ VEQQQPPGVN GQNQQTLLQQ KAHHAQAQKI FQQSLLEQPH LQFQLLQRLQ QQQQQQQQFL SPQSQLPHHQ LQSQQLQQLP PLSQGHQFPS SCTNNGLSTL QPPQMLVSRP QEKQNPPVGG GVKAYSGITD GGDAPSSSTS PSTNNCQISS SGFLNRSQSG PAILIPDAAI DISGNLVQDL YSKSDMRLKQ ELVGQQKSKA SLTDHQLEAS ASGTSYGLDG GDNNRQQNFL APTFGLDGDS RNSLLGGANV DNGFVPDTLL SRGYDSQKDL QNMLSNYGGV TNDIGTEMST SAVRTQSFGV PNVPAISNDL AVNDAGVLGG GLWPAQTQRM RTYTKVQERG SVGRSIDVNR YRGYDELRHD LARMFGIEGQ LEDPQTSDWK LVYVDHETDI LLVGDDPWEE FVNFVQSLKI LSSAEVQQMS LDGNFAGVPV TNQACSGGDS GNAWRGHYDD NSATSFNR // ID D7M272_ARALL Unreviewed; 301 AA. AC D7M272; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH49681.1}; GN ORFNames=ARALYDRAFT_660814 {ECO:0000313|EMBL:EFH49681.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH49681.1; -; Genomic_DNA. DR RefSeq; XP_002873422.1; XM_002873376.1. DR EnsemblPlants; Al_scaffold_0006_879; Al_scaffold_0006_879; Al_scaffold_0006_879. DR GeneID; 9309490; -. DR Gramene; Al_scaffold_0006_879; Al_scaffold_0006_879; Al_scaffold_0006_879. DR KEGG; aly:ARALYDRAFT_660814; -. DR OrthoDB; EOG09360YHN; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 208 301 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 208 301 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 301 AA; 34570 MW; 320C89A46185A653 CRC64; MASNPDFLWC KEERKQESFV KLLKHFDMSS ENTRAIPYDF VRNFSDNELS GNMKIRVQWG NSWKVKISKN PRFYFMEKSG WETFVRDNAL GDYEFLTFTH KGKMSFTVNI FNKDGKEMMQ PPQSRAFLAS SSRIKTEQDV KREEVLVSSD SSSRGPTTAA VSNGNGEGMY KRKLNFGKKK AEETQNSKRT ERVVSRQRVY AGAPSSSVAE FNIFISKSYI KSLAIPTTFA NDYMPKEKTM VKIHHPDGKK SWNVAFVVKK KGHIFSGGWK CLCREYPVVF GDTCKFTLIK PYELLLAVSR P // ID D7M3Z5_ARALL Unreviewed; 280 AA. AC D7M3Z5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH50522.1}; GN ORFNames=ARALYDRAFT_662392 {ECO:0000313|EMBL:EFH50522.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH50522.1; -; Genomic_DNA. DR RefSeq; XP_002874263.1; XM_002874217.1. DR EnsemblPlants; Al_scaffold_0006_2457; Al_scaffold_0006_2457; Al_scaffold_0006_2457. DR GeneID; 9308236; -. DR Gramene; Al_scaffold_0006_2457; Al_scaffold_0006_2457; Al_scaffold_0006_2457. DR KEGG; aly:ARALYDRAFT_662392; -. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 32109 MW; 770223F43F94F7D4 CRC64; MLPKSVTDKI QENVSKPCFW KSLSPGQNWK SKSMRSFPAE FVISMPGSLE HRVVFSVRWG NSWQLWLERE KEDLFMIEED WDEFVNDNHL GPNDNLFFKH DSTMFLEVQI FKNDGKEIID APLEVEPETE QLHPTTPKNF HKETTHASAS ASEFSENGPE RQGCVDVKNP ELYLLNPKNP YFVKTLSKRN DVLYVPKPVI KKYGLKFGPT HSPMHYLLPG DKINGLTKLY GGGDAPCFNG WVGLCRKYNL KTGDSVVCEL ERSGDLVTAV RVHFINENMR // ID D7M3Z6_ARALL Unreviewed; 280 AA. AC D7M3Z6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 39. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH50523.1}; GN ORFNames=ARALYDRAFT_489405 {ECO:0000313|EMBL:EFH50523.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH50523.1; -; Genomic_DNA. DR RefSeq; XP_002874264.1; XM_002874218.1. DR EnsemblPlants; fgenesh2_kg.6__2539__AT5G25475.2; fgenesh2_kg.6__2539__AT5G25475.2; fgenesh2_kg.6__2539__AT5G25475.2. DR GeneID; 9310331; -. DR Gramene; fgenesh2_kg.6__2539__AT5G25475.2; fgenesh2_kg.6__2539__AT5G25475.2; fgenesh2_kg.6__2539__AT5G25475.2. DR KEGG; aly:ARALYDRAFT_489405; -. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0005044; F:scavenger receptor activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001190; SRCR. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS50287; SRCR_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 218 280 SRCR. {ECO:0000259|PROSITE:PS50287}. FT DOMAIN 241 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 32154 MW; 6D5F6685C9EB6566 CRC64; MLPRGAIDKI QGNVSKPCFW KSLSPGQNWK SKPMRIIPEE FVRRTPGAFE HRVVFSVRWE NSWQLWLERE KNELFMIEED WNEFVDDNHL GPNDNLFFRH DETMNLEVQI FKNNGDEIID VPLEVEPETE PFHPTPKKSH RETTAASASV SGGSANGGTN CRGRQRSNDV KNPERYLLNP ENPYFVQAVT KRNDVLYVSR PVVQTYNLKF GPVKSTITYL LPGGKKEEGE TKIYNGQPCF SGWSVLCRRH NLKIGDSVVC ELERCGGLVT AVRVHFVNKY // ID D7M4V0_ARALL Unreviewed; 332 AA. AC D7M4V0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH51235.1}; GN ORFNames=ARALYDRAFT_912083 {ECO:0000313|EMBL:EFH51235.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH51235.1; -; Genomic_DNA. DR RefSeq; XP_002874976.1; XM_002874930.1. DR EnsemblPlants; scaffold_604140.1; scaffold_604140.1; scaffold_604140.1. DR GeneID; 9311043; -. DR Gramene; scaffold_604140.1; scaffold_604140.1; scaffold_604140.1. DR KEGG; aly:ARALYDRAFT_912083; -. DR OrthoDB; EOG09360IMA; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:1901371; P:regulation of leaf morphogenesis; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 38124 MW; C6BA2033196636D1 CRC64; MSTLNSDQEL ADIGASSSDN TNYFYSSERR EHMFDKVLTP SDVGKLNRLV IPKQHAENYF PLEGNQNGTV LDFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLF AGDTVSFHRG FIPDDNAPPE RRRKLMFIDW RHRAEINLVH NFNQHNFIFG SPTYPTARFY PVTPEYSMPS HRSFPPFYHN QFQEREYLGY GYGRIVNGNG ARYYAGSPLD HHQWNLGRSE PLVYDSVPVF PAGRVLPSAP PQPSTTKKLR LFGVDVEEST SSGETRGEMG VPGYSSSSPV VIRDDDQSFW RSPRGEMGAS SSSAMQLSDD EEIKRKGKSI EF // ID D7M6N4_ARALL Unreviewed; 134 AA. AC D7M6N4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH49952.1}; GN ORFNames=ARALYDRAFT_909450 {ECO:0000313|EMBL:EFH49952.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348718; EFH49952.1; -; Genomic_DNA. DR RefSeq; XP_002873693.1; XM_002873647.1. DR EnsemblPlants; scaffold_601507.1; scaffold_601507.1; scaffold_601507.1. DR GeneID; 9309761; -. DR Gramene; scaffold_601507.1; scaffold_601507.1; scaffold_601507.1. DR KEGG; aly:ARALYDRAFT_909450; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 134 AA; 15323 MW; 85F2B82F6B0F9608 CRC64; MALSDVLPRF FSVFLSQYNS NSFLIPRSYY DHLPRRLPKT VILMGNGGKS WKVAMKSKRD QVYFEQGWAN FVAENELRDG EVLTFVFDGH RCYEVSIYTR GGCKETRAAI EVEEISDETA SDYSCDSIVS VIQV // ID D7M8S6_ARALL Unreviewed; 339 AA. AC D7M8S6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH43448.1}; GN ORFNames=ARALYDRAFT_656694 {ECO:0000313|EMBL:EFH43448.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43448.1; -; Genomic_DNA. DR RefSeq; XP_002867189.1; XM_002867143.1. DR EnsemblPlants; Al_scaffold_0007_749; Al_scaffold_0007_749; Al_scaffold_0007_749. DR GeneID; 9303261; -. DR Gramene; Al_scaffold_0007_749; Al_scaffold_0007_749; Al_scaffold_0007_749. DR KEGG; aly:ARALYDRAFT_656694; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 224 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 224 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38881 MW; 01CE1F65FB232B1B CRC64; MEESCEDCMK WEEELYWTHF QTLHFTQLLL PGFHYRLAIP QKFSTHCKRK LPQIVTLKSP SGATYSVRVE EDDEKTLAFG FGWDKFVKDH SLEENDLLVF KFHGLSEFEV LVFDGQTLCE KPTSYFVRKC GHAEKTKVSQ TGYEQEEHIN PDIDTASAQL PVISPTSTVR VSERKYHPLS SFKKMRGEIS NDNLDQKTDV EMISAGSNNR ALSLAKGAIS PDGFLVFMRR SHVLSKCFLT IPYKWCVKNM LMARQEVVMQ VDQRKWDMKF NFFGARGSGG ISTGWKKFVQ DNNLREGDVC VFEPANSVTK PLHLNVYIFC GEETERSKNV DSVHTISSE // ID D7M8Z2_ARALL Unreviewed; 637 AA. AC D7M8Z2; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 47. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_657697 {ECO:0000313|EMBL:EFH46009.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH46009.1; -; Genomic_DNA. DR RefSeq; XP_002869750.1; XM_002869704.1. DR STRING; 59689.Al_scaffold_0007_1752; -. DR EnsemblPlants; Al_scaffold_0007_1752; Al_scaffold_0007_1752; Al_scaffold_0007_1752. DR GeneID; 9305821; -. DR Gramene; Al_scaffold_0007_1752; Al_scaffold_0007_1752; Al_scaffold_0007_1752. DR KEGG; aly:ARALYDRAFT_657697; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 522 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 637 AA; 71880 MW; AFE7129853EF67E5 CRC64; MGGGEYLYDE LWKLCSGPLV DVPQAQERVY YFPQGHMEQL EASTQQVDLN TMKPLFVLPP KILCNVMNVS LQAEKDTDEV YAQITLIPVG TEVDGPTSPD PSPPELQRPK VHSFSKVLTA SDTSTHGGFS VLRKHATECL PPLDMTQQTP TQELVAEDVH GYQWKFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDTFVF LRGEKGELRV GVRRANRQQS SMPSSVISSH SMHLGVLATA RHATQTKTMF IVYYKPRTSQ FIISLNKYLE AMSNKFSVGM RFKMRFEGED SPERRYSGTV IGVNDCSPHW KDSKWRCLEV HWDEPASISR PNKVSPWEIE PFVTSENVPK SVMLKNKRPR QVSEVSALDV GGITASNLWS SVLTQSHEFA QSCITSQWSS PQQCHRDANE DAKKSDWINN SYSVSNVSKD STLNDQMVSP VEQKKPETTT NYRLFGIDLM SSSLAASEEK TAPMRPINIS KPTMDSHSDP KSEISKVSEE KKQEPAEGSP KEVQSKQSSS TRSRTKVQMQ GVPVGRAVDL TALKGYNELI DDIEKLFDIK GELQSRNQWE IVFTDDEGDM MLVGDDPWPE FCNMVKRIFI WSKEEVKKMT PGNQLRMLLT EVETTLTTAS KTDNHTN // ID D7M9A5_ARALL Unreviewed; 641 AA. AC D7M9A5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH43466.1}; GN ORFNames=ARALYDRAFT_913118 {ECO:0000313|EMBL:EFH43466.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43466.1; -; Genomic_DNA. DR RefSeq; XP_002867207.1; XM_002867161.1. DR STRING; 59689.scaffold_700860.1; -. DR EnsemblPlants; scaffold_700860.1; scaffold_700860.1; scaffold_700860.1. DR GeneID; 9303279; -. DR Gramene; scaffold_700860.1; scaffold_700860.1; scaffold_700860.1. DR KEGG; aly:ARALYDRAFT_913118; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.130.10.10; -; 2. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR InterPro; IPR001680; WD40_repeat. DR InterPro; IPR019775; WD40_repeat_CS. DR InterPro; IPR017986; WD40_repeat_dom. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SMART; SM00320; WD40; 3. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF50978; SSF50978; 1. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS00678; WD_REPEATS_1; 1. DR PROSITE; PS50082; WD_REPEATS_2; 1. DR PROSITE; PS50294; WD_REPEATS_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221}. FT DOMAIN 251 294 WD_REPEATS_REGION. FT {ECO:0000259|PROSITE:PS50294}. FT REPEAT 251 285 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT DOMAIN 454 508 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 525 627 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 454 508 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 525 627 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 641 AA; 72204 MW; C501B68D7A3B6DAB CRC64; MDEAGRMRRH DETMTLIKNY LEQHGMSSTV QANNTIPTVD VENQRERVVQ YVKSLIEQDL NVRSMFYPTV IEGQSRLQTL LEQSVNWQHR DCVHSPLFAS LLNDHHCTPQ PLHQNHQTLA TNNLDMQASS SGLGNYDPML LEFNGQPQHS AGSHYSPSLY LTIEDDTVMP GWTINSDQSA GFSNDIPSVV TVPPTFSLSD SVVKDIHVTE VVTAFEFHHH LPLVLAVGFS EGLVHTYNYI HEQRPKPHLE IEAHSGPVND IVFYSSQGEL KIVTCGNDRH IKAWNSSNGL VYWKLTHTAP LNSLALHQDG NKVQLFILDV FGTAMKPNIG YNGPLDSNPL LFPSDMNARL ELKFSGDGKR LFCYGPGGLV EVDRESFETR RNYNSVMNPQ TKCMDICKNG YIAVGDEYCV KVWNVDSDHL FRKIKIDAAV FPECPMVKFN REGSLLAVVS SLWRRWTIKL AKNISSAVFY IRLGWENVCS VNGLSEGELC KFKLFQNGER PVLWLCPGEP GIGHKQKRTL DEVSKGKEKN TPSRESTGQL SLPMSFTRKN NINKAGEVIL LNQDGRKWSS YLQITGLGRA GSEWFYLRRG WREMCEANGV KGKGNQSTRK KRACETAPQP KNVKKAPRVG VEGRLNKRIS C // ID D7MAS9_ARALL Unreviewed; 785 AA. AC D7MAS9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 47. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH45558.1}; GN ORFNames=ARALYDRAFT_913255 {ECO:0000313|EMBL:EFH45558.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH45558.1; -; Genomic_DNA. DR RefSeq; XP_002869299.1; XM_002869253.1. DR STRING; 59689.scaffold_700997.1; -. DR EnsemblPlants; scaffold_700997.1; scaffold_700997.1; scaffold_700997.1. DR GeneID; 9305370; -. DR Gramene; scaffold_700997.1; scaffold_700997.1; scaffold_700997.1. DR KEGG; aly:ARALYDRAFT_913255; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 289 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 518 568 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 289 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 785 AA; 86892 MW; 58F65C39E86481D7 CRC64; MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG TAYEQSIFCE VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLF SMNVSHISNG RDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTQSSLQMK QEESLLPSRL DALRHKTERK ELQELSAQPN LSISLGPTLM TSPFHDAAVD DRSKTNSIFQ LAPRSRQLLP KPANSAPIAA GMEPSGSLVS QIHVARPPPE GRGKTQLLPR YWPRITDQEL LQLSGQYPHL SNSKIIPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISL PEGLPLKIQD IKGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRTEPEG KLVMGYRKAT NSTATQMFKG SSEPNLNMFS NSLNPGCGDI NWSKLEKSED MAKDNLFLQS SLTSARKRVR NIGTKSKRLL IDSVDVLELK ITWEEAQELL RPPQSAKPSI FTLENQDFEE YDEPPVFGKR TLFVSRQTGE QEQWVQCDAC GKWRRLPVDI LLPPKWSCSD NLLDPGRSSC SAPDELSPRE QDTLVRQSKE FKRRRLASSN EKLNQSQEAS ALDTLGNGGI TTTGEQEEIT VAATTKHPRH RAGCSCIVCS QPPSGKGKHK PSCTCTVCEA VKRRFRTLML RKRNRGEAGQ ASQQAQSQSE CRDETEVESI PAIEPAAGEN IDLNSDPGAS RVSMMRLLQA AAFPLEAYLK QKAISNTAGE QQSSDMVSTE HGSSSAAQEH EKEKDTTNGA HDPVN // ID D7MB37_ARALL Unreviewed; 394 AA. AC D7MB37; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH43542.1}; GN ORFNames=ARALYDRAFT_913296 {ECO:0000313|EMBL:EFH43542.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43542.1; -; Genomic_DNA. DR RefSeq; XP_002867283.1; XM_002867237.1. DR EnsemblPlants; scaffold_701038.1; scaffold_701038.1; scaffold_701038.1. DR GeneID; 9303355; -. DR Gramene; scaffold_701038.1; scaffold_701038.1; scaffold_701038.1. DR KEGG; aly:ARALYDRAFT_913296; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 158 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 386 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 386 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 394 AA; 45244 MW; D80A0410783EEF60 CRC64; MVNHPLQSPA NPHFFQPLLP GSETHLSIPV TFFSKHIEGK NEQKTARLIS DASDRIWQVK MDGRRLTEGW KEFATAHNLQ IGDIIIFKHQ GDMLFSVTPF GPSCCEIQYV QCLIKKEDDN VHDDEDDMEN QHNSRKGLRQ KNLKPKTELK LSLSYDYCFV ANVTASNLKF DTMNLPKKAS SSKALNKRCH KIILVNKEGN SWTLNLRFRE SEGSYYIRGG WKRFCSENRQ KEGDLITFNL VGDGRSTPML CICPEEACSE LMGIARGKKK TKKRRMWVAS SSSRQNSFVT LSLTAYNIKY SKINLPVEFT KINGITRKHE KIILMDKHGV KRLTRLVHDG PNYGRRGLGK GWKLFCEAND VLKIGEPFKL KLTWENNTPL LRFCSKVKEE PIYV // ID D7MB38_ARALL Unreviewed; 102 AA. AC D7MB38; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH43543.1}; GN ORFNames=ARALYDRAFT_913297 {ECO:0000313|EMBL:EFH43543.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43543.1; -; Genomic_DNA. DR RefSeq; XP_002867284.1; XM_002867238.1. DR EnsemblPlants; scaffold_701039.1; scaffold_701039.1; scaffold_701039.1. DR Gramene; scaffold_701039.1; scaffold_701039.1; scaffold_701039.1. DR KEGG; aly:ARALYDRAFT_913297; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 102 AA; 11657 MW; 87A4B572581F9791 CRC64; MADPVLKSPT NPHFLQPLLP GFHSHLHLQG RNDLKTVKLR ADASDTVWEV KIEDGRRLTR GWKEFVTAQD FFIGDVIVFR HEGDLVFHVT ALGPSFCEIE YT // ID D7MB41_ARALL Unreviewed; 632 AA. AC D7MB41; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH43545.1}; GN ORFNames=ARALYDRAFT_913300 {ECO:0000313|EMBL:EFH43545.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43545.1; -; Genomic_DNA. DR RefSeq; XP_002867286.1; XM_002867240.1. DR EnsemblPlants; scaffold_701042.1; scaffold_701042.1; scaffold_701042.1. DR GeneID; 9305389; -. DR Gramene; scaffold_701042.1; scaffold_701042.1; scaffold_701042.1. DR KEGG; aly:ARALYDRAFT_913300; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR010997; HRDC-like. DR InterPro; IPR002121; HRDC_dom. DR Pfam; PF02362; B3; 3. DR Pfam; PF00570; HRDC; 1. DR SMART; SM01019; B3; 3. DR SMART; SM00341; HRDC; 1. DR SUPFAM; SSF101936; SSF101936; 3. DR SUPFAM; SSF47819; SSF47819; 1. DR PROSITE; PS50863; B3; 3. DR PROSITE; PS50967; HRDC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 151 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 270 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 622 HRDC. {ECO:0000259|PROSITE:PS50967}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 270 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 632 AA; 71207 MW; AE66F3FC4119190B CRC64; MANASPLSRT NPHFFQPLLP GFDSHLNIPV KFFSDHIKGK HEGKTVNLRS DASERTWKVK MEGNRLTKGW KEFVKAHDLR VSDFVVFRHE GEMLFNVTAL GPSCCEIQYA QPRRHEEDEE SNETEISLRS EKEVEENVKT ESDQSSPNLN CFSRSVTASN LSRDTVGFPI NFAKQNGLNK ERQEIFLMNG EGKTWESELK RWGDCRLSIV RGWTSFCTAN KLEVGDSCTF RLLQKTAETP VFQLCSSTKS ERKIQSAEGC IDDKTGGSRF VKLTPTLNSL HVGKQHLPVS FTRENRLINP GKIVLVDKNR AEWLMELKVD KSTGLMYIIS GNGWKKFCAA NEISAGESLI LELIRGGVTP LLKFISKLDQ PPFEAEAQAH KRARVQKLSQ ETEPKLDMRE KTAEDRVPPR ASNKSSGNQE NLQHTQPCSV SNQLAKVKQS VVDALTSIRR FRAELDTTEQ KLEISLQEIN KLGMICIAIF TFNFGSTRFS KNFGTERTED NGNKTTTSSK PGATLAKDPL ASEKQSTLPL PTKDGLPIDI NLSFNIYTAV RKLRTALARE GPDGVMAYQI FMNSTLQQIS RQIPRTKEEL LQINGLVQAK VSKYGDRLLE TIETTVNEYY GTKKKDPIII HQ // ID D7MB43_ARALL Unreviewed; 374 AA. AC D7MB43; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH45577.1}; GN ORFNames=ARALYDRAFT_328561 {ECO:0000313|EMBL:EFH45577.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH45577.1; -; Genomic_DNA. DR RefSeq; XP_002869318.1; XM_002869272.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_7000788; fgenesh1_pm.C_scaffold_7000788; fgenesh1_pm.C_scaffold_7000788. DR GeneID; 9303360; -. DR Gramene; fgenesh1_pm.C_scaffold_7000788; fgenesh1_pm.C_scaffold_7000788; fgenesh1_pm.C_scaffold_7000788. DR KEGG; aly:ARALYDRAFT_328561; -. DR OrthoDB; EOG093616T3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 374 AA; 42722 MW; 8BEFAF01DF7A75DA CRC64; MADPVLQSTT CPHFFQPLLP GFDSYLNIPV TFFLKHVERS NEQRTANLRS DASDTTWEVK IDGRSRRLTG GWKEFATAHD FRVGDIIVFR HEGDLVFHVT ALGPSCCEIQ YVQSCNDDNL DDDQEDIRNL PMEQSLKTEL EAERSLDDDD EDDNMGKFPR KKHVEKEIPE AEAKSFSSDK SCFVAHVTDS NLRNDTLFLP TKFVRSDGLI KGSNKIVLMN EEIRTWTLIL KFRDSKLKSV STKDCNKGKR NESGDSRQKV PSSSSSVSEY RFVTLTVRPA VLKNGRLHLP RKFIEVNQME NIGMKKITLL DKHGVEWPVN LVMEKGNTRT RLGSGLKEFF KANGIKAYES FVLELVWEDK TTLPMLKFCS KTKT // ID D7MB44_ARALL Unreviewed; 321 AA. AC D7MB44; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH43547.1}; DE Flags: Fragment; GN ORFNames=ARALYDRAFT_491574 {ECO:0000313|EMBL:EFH43547.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43547.1; -; Genomic_DNA. DR RefSeq; XP_002867288.1; XM_002867242.1. DR EnsemblPlants; fgenesh2_kg.7__1007__AT4G31630.1; fgenesh2_kg.7__1007__AT4G31630.1; fgenesh2_kg.7__1007__AT4G31630.1. DR GeneID; 9305390; -. DR Gramene; fgenesh2_kg.7__1007__AT4G31630.1; fgenesh2_kg.7__1007__AT4G31630.1; fgenesh2_kg.7__1007__AT4G31630.1. DR KEGG; aly:ARALYDRAFT_491574; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EFH43547.1}. SQ SEQUENCE 321 AA; 36468 MW; 0DA2DA0B1FA7436B CRC64; LMTINQCLMT MNNGVRIINL TITPSKKSIR ISSKKRARTE TESSSDRSYL LAHVTPSSLR RDIMCLLSKF ARSNGLDRRE CEIDLIDEHE KSWTLLLRHN KKTGQAFMRG GWRSFCRNNG IKAGSFCRFK LVQSGIKPVL QLCPNASSIP EGNSSKASKK RNVSESEGDE IESEDCSETV AMNQNKIMTF DLKPYVFRSC QFRLPASFAR ENGIVEAGEV TVLNKDGVEW KSHLVNVKGR DQFYIRSCQD FFVANGIKYV VTVLVLGFCY CEIVVLKRIV SSIVDTLTDV RRFQRELEVK EHNLEASLQE IDALGMNLNY Q // ID D7MB45_ARALL Unreviewed; 912 AA. AC D7MB45; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 39. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH43548.1}; GN ORFNames=ARALYDRAFT_353664 {ECO:0000313|EMBL:EFH43548.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43548.1; -; Genomic_DNA. DR RefSeq; XP_002867289.1; XM_002867243.1. DR EnsemblPlants; fgenesh1_pg.C_scaffold_7000837; fgenesh1_pg.C_scaffold_7000837; fgenesh1_pg.C_scaffold_7000837. DR GeneID; 9303361; -. DR Gramene; fgenesh1_pg.C_scaffold_7000837; fgenesh1_pg.C_scaffold_7000837; fgenesh1_pg.C_scaffold_7000837. DR KEGG; aly:ARALYDRAFT_353664; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 112 174 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 208 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 439 531 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 674 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 701 798 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 112 174 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 208 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 439 531 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 578 674 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 701 798 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 876 903 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 912 AA; 103421 MW; 9BAF6A227D836151 CRC64; MANPLSSSQS NRPFFVRSLA GHNSNLIIPD AFFTAHLKDK TGLTKLKLTS DASDRTWDVK LNGRRFAGGW DDFSAAHCLR DDDVLVFRHD GKMSFSKHFS RTNGLTKRWC VIDLMNLSGE SWALGLRHNN RTGQDYIRGH WRSFCRANEM KPGSSYRFKL VRNGTRPLLR LCSEVIPEGN RSRANGKDNV SEKYSRAAGS ASTKQNKFLT VTFKHYMIQS GHLRLPRSFA RENGIKEAEE IILVDKNGVK WPSYVASAKQ RGEFYMAHGW KRFCEANKLN TGDTFTLEFV RGEDTTPMLK FCSKAKVKIE QEEAPEETET PFQKRARVSA EVGHSRRTQT PNKASHDPKI LQRKQPLQPC SFSDQAKKVK QSIVNILTGI KRFRSELEIK EQSLEAALLE IDALVLNINR GESIGNQQNP QVIIKSRSEV KIRKWNMNFC KPCLYLELVQ QSRQMIPAEF FSTYVEGKNQ STKLKLTSDA LDRTWEVKLN GRRFARGWEN FSTVHSLQDD DVLIFREIGD MTFHVTASGR SFCKVQYISS DEDGADEDDA WTEYSDSKNI ASKKKPRTEA KSSSKNSYLV AHVTSSNLSR DRLSLIKGFA RSNGLNQRCC EIDLMNQHGK SWTVGLRYST ANEQASISGG WRDFCLANGL EAGSFYRFKL VQNGARPLLR LCSETIPEED CYKGNRKEIF SESASMKQSK FLTMTFKPYM LKSGQLHISR PFAIENEIKE AEDITLVDKN GGNWPSYVAS GDGQGGKYYL AKGWRGFCAA NRLKTGETFT LEFVRGESTT PMLKFCSKTK IEQVPLDEER ETQEETETRV EKRARVSAGG GSSRRNQASN KPNADPQNLK PRQPPCSISD RVQKVKQIIE DTLTGVKRIR SELEVKEQNL EASILEIDAL GEKVLEINKI LK // ID D7MB48_ARALL Unreviewed; 495 AA. AC D7MB48; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH45578.1}; GN ORFNames=ARALYDRAFT_491577 {ECO:0000313|EMBL:EFH45578.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH45578.1; -; Genomic_DNA. DR RefSeq; XP_002869319.1; XM_002869273.1. DR STRING; 59689.fgenesh2_kg.7__1010__AT4G31610.1; -. DR EnsemblPlants; fgenesh2_kg.7__1010__AT4G31610.1; fgenesh2_kg.7__1010__AT4G31610.1; fgenesh2_kg.7__1010__AT4G31610.1. DR GeneID; 9303364; -. DR Gramene; fgenesh2_kg.7__1010__AT4G31610.1; fgenesh2_kg.7__1010__AT4G31610.1; fgenesh2_kg.7__1010__AT4G31610.1. DR KEGG; aly:ARALYDRAFT_491577; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 151 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 274 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 274 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 495 AA; 56355 MW; 8451E50B277AF16F CRC64; MEDPPHFSLF QHKFQTGDKP LLTLDADFLM NHTKVLLKSD ASDRPRKVKL DGGRLSDGWE EFAGDHKFKD GDVLVFKHHG DEVFHVSVSG DIQNASSSHV DTEDTYIDDE DLDVDDDDDV DDDEGEDNLE NILEKTNKKQ EADSSSEHPG FITACVTRYS LLHDRLDLSR NFTLLFGGNQ KTCEIDVVNE QGRRWTMKLA KNISSGVFYI RQGWGNFCCV NGLSQGQLCK FKLFQNGERP VLWLCPQESG NGRKEKRTFD EVSKVKEKKT PSPFLIVKYT PSRDTTGQLS LPVSFTRKNN INKAGEIILL NQDGRKWSSY LQITGLGRGG SEWFYLRRGW REMCEANGVK VNDSFKLELM WEGANPMFKF CSKIENHEYK GKGNQRTRKK RACETDPQPR NVKKTPRVGV EGPEHQVDEE RGRTQVSNRT NTISRELQRL LPRSCSGIVD TLNTVRQCRT ELETSEQNLQ ASLLAIEALG ERIWGISKIL SNNLV // ID D7MC88_ARALL Unreviewed; 670 AA. AC D7MC88; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_913475 {ECO:0000313|EMBL:EFH43628.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH43628.1; -; Genomic_DNA. DR RefSeq; XP_002867369.1; XM_002867323.1. DR STRING; 59689.scaffold_701217.1; -. DR EnsemblPlants; scaffold_701217.1; scaffold_701217.1; scaffold_701217.1. DR GeneID; 9303441; -. DR Gramene; scaffold_701217.1; scaffold_701217.1; scaffold_701217.1. DR KEGG; aly:ARALYDRAFT_913475; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 584 664 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 670 AA; 74000 MW; D2EAA8B1C683AD58 CRC64; MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI HPMVLCRVLA IKYMADAESD EVYAKLRLIP LKDDEYVDHE YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS EFCVKAVDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL PRSPSLGLRN IDTKNEKGFC FLTMGTTPCN DTESKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG RELSSSDEGS PCSNKVHDAS GLETGHCKVF MESDDVGRTL DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVI // ID D7MES5_ARALL Unreviewed; 736 AA. AC D7MES5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH46142.1}; GN ORFNames=ARALYDRAFT_914517 {ECO:0000313|EMBL:EFH46142.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH46142.1; -; Genomic_DNA. DR RefSeq; XP_002869883.1; XM_002869837.1. DR STRING; 59689.scaffold_702259.1; -. DR EnsemblPlants; scaffold_702259.1; scaffold_702259.1; scaffold_702259.1. DR GeneID; 9303913; -. DR Gramene; scaffold_702259.1; scaffold_702259.1; scaffold_702259.1. DR KEGG; aly:ARALYDRAFT_914517; -. DR OrthoDB; EOG0936054P; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 331 431 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 736 AA; 82437 MW; 89F214FEA74ECA3E CRC64; MSSSSFSARF CFNHECFEFK LDHCRPGWRL RSGDFVDLCD RCASAYEQGQ FCDVFHQRAS GWRCCESCGK HFVQQIHCGC IVSASAFTLL DAGGIECLAC ARKKVALGSN FSPSPSFLFQ SPISEKFNDL SINWSSSTRS NQISYQPPSY LGPSALQFDS RNRGGNNEFS QPTSKDRATA CPMGKKRGMN DMIGKLMSEN SKHYKVSPFP NVNVYHPLIS IKEGPCGTQL AFPVPITTPI EKTGHSRLDG SNLWHTPNSS PLSRLHNDLN GGSDSPFESK SRNVRTHLDT PGKYQVVPRY WPKVSYKNQV LQNQSKEYPS SLIDTTLEYN FMLSASDTGI VGRVVLPKKC AEAFLPQLSH TQGVPLTVQD PMGKEWTFQF RFWPSRNSRI YVLEGVTPCI QSLQLQAGDT ELMPGKWELI SIFLLVIFSR LDPERKLILG FRKASVTRSS DQAETADMHS PSKVKKSAYI TKESPGVECS SGKKKSSMMI TRSKRQKVEK GDHNLLKLTW EEAQGFLLPP PNLTPSRVVI EDYEFEEYED APIIGKPTDA AGSTCTEVEG LLISPTTTKH PRHRNGCTCI VCIQSPSGIG PKHDRRCSCA VCETKKRRRR SLLLRREKMQ MEKEDNAHKE LEQLNSDNGL HQSANNSENH ERHDSPERHA SPLKSQLDLN FKPEKDEESL PGSNKTTENK TFHHNDTVNS SFKSPSSSSA HSQNNKEDEG KLRKNTEVAD TTTSSM // ID D7MF20_ARALL Unreviewed; 373 AA. AC D7MF20; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH45409.1}; GN ORFNames=ARALYDRAFT_912952 {ECO:0000313|EMBL:EFH45409.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH45409.1; -; Genomic_DNA. DR RefSeq; XP_002869150.1; XM_002869104.1. DR EnsemblPlants; scaffold_700694.1; scaffold_700694.1; scaffold_700694.1. DR GeneID; 9303194; -. DR Gramene; scaffold_700694.1; scaffold_700694.1; scaffold_700694.1. DR KEGG; aly:ARALYDRAFT_912952; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 42507 MW; 34E4EBEB26458BDA CRC64; MAATDFVFPP RFFKVFVSHF TSDSMMLPIA YYGHLPSRLH KTVILRGPGG CSWNVATTIN EKEVHFSQGW AKFVEDNTLS DGDILTFVYN GDHVFEVSIY RGYDACKEIS AVTEVEEDKE DSVFSLSSED NDTCSQSVMK NTIPEGRDKG KSKVEVVGDP DDEEDSVYSA SGEETETDTD SEFQVAKTTI PKSKKKGKKK EQVVESSDED SDSDSDYIET FGQLDIEENS NSEEDSSYAP DDEGTSTCVK PKVANVKRKV EPKIKNPETY LDDPKNIHFE TNVKNRLYEL LVHAQLVKDY CLKFGDHVYY IDRIGKLKAK TAKWKDQRVC IKKWMRICDR NELKKEDRIL CELLRKGTFV YAIKLHIIRG KNL // ID D7MHL0_ARALL Unreviewed; 499 AA. AC D7MHL0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 37. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH46655.1}; GN ORFNames=ARALYDRAFT_355494 {ECO:0000313|EMBL:EFH46655.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH46655.1; -; Genomic_DNA. DR RefSeq; XP_002870396.1; XM_002870350.1. DR EnsemblPlants; fgenesh1_pg.C_scaffold_7002667; fgenesh1_pg.C_scaffold_7002667; fgenesh1_pg.C_scaffold_7002667. DR GeneID; 9304464; -. DR Gramene; fgenesh1_pg.C_scaffold_7002667; fgenesh1_pg.C_scaffold_7002667; fgenesh1_pg.C_scaffold_7002667. DR KEGG; aly:ARALYDRAFT_355494; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 372 468 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 372 468 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 499 AA; 56701 MW; 0D54A3E083A62772 CRC64; MANSMFSSSA KPHFLKPILP GFKTYILIPK AFYSKYLEGR QEGNAAELRS DASEITWNIK IDGRRMTKGW EEFAVGHNLQ VGDILVFRHE GNLLFHVTPF GLSCCEILYS QNDEKVVKDK TGKVTRYKTV KKTAKNECSS VDTDFVYLPR GFTTSSGLSK LCNEIILMDE KSRPSTLKLC YHKSRKPPVL RIYPLERDED NIGNHSKKIK QEVEHETVKE ETNVESGKLK RDGLLKKDPQ KVCSSSHDTI FVVPGTASNQ RNDSFHLPKG FTTSSGLSKL CKKIIFMDEK DNRFTVRRGW RGFCCRNGHK TGCFLRLILV RNGKTPVLRI FPLEKDESSI GKNSKEIKQE VEHESAKEEK NVESLSLSDN SSFVVSVTVS NLREDILYLP IRLSRSNILD KKFHEISLMN KQGRTWTLSL KYSKSSGKFR ITHGWKSFCE ANGQNAGCTF LFNLVRNRTS PVLLMTSLWD DIHQSKTASF DNSVGPRRSS MGQEVKIMG // ID D7MHL1_ARALL Unreviewed; 282 AA. AC D7MHL1; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH46656.1}; GN ORFNames=ARALYDRAFT_659010 {ECO:0000313|EMBL:EFH46656.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH46656.1; -; Genomic_DNA. DR RefSeq; XP_002870397.1; XM_002870351.1. DR EnsemblPlants; Al_scaffold_0007_3065; Al_scaffold_0007_3065; Al_scaffold_0007_3065. DR GeneID; 9306468; -. DR Gramene; Al_scaffold_0007_3065; Al_scaffold_0007_3065; Al_scaffold_0007_3065. DR KEGG; aly:ARALYDRAFT_659010; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 282 AA; 31935 MW; 820AF94504841C29 CRC64; MANSMFSSSA KPHFLKPILP GFKTYILIPK AFYSKYLEGR QEGNAAELRS DASEITWNIK IDGRRMTKGW EEFAVGHNLQ VGDILVFRHE GNLLFHVTPF GLSCCEILYS QNDEKVVKDK TGKVTRYKTV KKTAKNECSS VDTDFVVPVT ASNQRLDSFY LPRGFTTSSG LSKLCNEIIL MDEKSRPSTL KLCYHKSRKP PVLRIYPLER DEDNIGNHSK KIKQEVEHET VKEETNVESG KLKRDGLLKK DPQKVCSSSH DTIFVVPGTA SNQRNDSFVR SP // ID D7MI86_ARALL Unreviewed; 805 AA. AC D7MI86; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_493698 {ECO:0000313|EMBL:EFH46770.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH46770.1; -; Genomic_DNA. DR RefSeq; XP_002870511.1; XM_002870465.1. DR STRING; 59689.fgenesh2_kg.7__3131__AT5G37020.1; -. DR EnsemblPlants; fgenesh2_kg.7__3131__AT5G37020.1; fgenesh2_kg.7__3131__AT5G37020.1; fgenesh2_kg.7__3131__AT5G37020.1. DR GeneID; 9304575; -. DR Gramene; fgenesh2_kg.7__3131__AT5G37020.1; fgenesh2_kg.7__3131__AT5G37020.1; fgenesh2_kg.7__3131__AT5G37020.1. DR KEGG; aly:ARALYDRAFT_493698; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 699 783 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 805 AA; 89330 MW; 1BF7B328CFEABA66 CRC64; MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLADGRGDL GSGLTWLRGG GGEQQGLLPL NYPSVGLFPW MQQRLDLTQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHQQYL QQSASHNPDL MLQQQQHQQA RHLMHAQSQI MSENLPQQNM RQEVSNQPAG QQQLQQADQN AYLNAFKMQN GHLQQWQHSE MPSPSFMKSD FPDSSNKFAT TASPASGDGS NLLNFSITGQ SVLPEQLTTE GWSPKASNTF SEPLSLPQAY PGKSLALEPG NPSLFGVDPD SGLFLPSTVP RFASSSGDAE ASPMSLTDSG FQNSLFGCMQ DTHELLHGAG QINPSTQTKN FVKVYKSGSV GRSLDISRFS SYHELREELG KMFAIEGLLE DPLRSGWQLV FVDKENDILL LGDDPWESFV NNVWYIKILS PEDVQQMGDH GEGSGGSFPQ NPTHL // ID D7MJB9_ARALL Unreviewed; 241 AA. AC D7MJB9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH44932.1}; GN ORFNames=ARALYDRAFT_493975 {ECO:0000313|EMBL:EFH44932.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348719; EFH44932.1; -; Genomic_DNA. DR RefSeq; XP_002868673.1; XM_002868627.1. DR STRING; 59689.fgenesh2_kg.7__3408__AT4G03170.1; -. DR EnsemblPlants; fgenesh2_kg.7__3408__AT4G03170.1; fgenesh2_kg.7__3408__AT4G03170.1; fgenesh2_kg.7__3408__AT4G03170.1. DR GeneID; 9304745; -. DR Gramene; fgenesh2_kg.7__3408__AT4G03170.1; fgenesh2_kg.7__3408__AT4G03170.1; fgenesh2_kg.7__3408__AT4G03170.1. DR KEGG; aly:ARALYDRAFT_493975; -. DR OrthoDB; EOG09360NZK; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 228 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 241 AA; 27764 MW; 421512D024442191 CRC64; MATSTGETTS LTHKEVNVAA ESPEEEDTDD EEDIDDEDDT DDEVASTPLL QISQSRQKQS RKREEKSDKN QPKRVKKHNI MKINIDDFSE ETLRSIEVWY KDELDPQDIF GDNEVTKQFS KPIKKQLMSS DVDKDQCRLM LSKEQVKEKM LPFLEESEDP VKGVDVSVYG PDGAVQKMKF KIWNGDKTPV LTSGWKQFVA DYGLVMTSDF IIVWMFRHIK TRNICFAIAN NSFPLKKKSS R // ID D7MKQ0_ARALL Unreviewed; 858 AA. AC D7MKQ0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 50. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_919450 {ECO:0000313|EMBL:EFH41023.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH41023.1; -; Genomic_DNA. DR RefSeq; XP_002864764.1; XM_002864718.1. DR STRING; 59689.scaffold_802850.1; -. DR EnsemblPlants; scaffold_802850.1; scaffold_802850.1; scaffold_802850.1. DR GeneID; 9302539; -. DR Gramene; scaffold_802850.1; scaffold_802850.1; scaffold_802850.1. DR KEGG; aly:ARALYDRAFT_919450; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IEA:EnsemblPlants. DR GO; GO:0010047; P:fruit dehiscence; IEA:EnsemblPlants. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0008285; P:negative regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0048481; P:plant ovule development; IEA:EnsemblPlants. DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants. DR GO; GO:1903288; P:positive regulation of potassium ion import; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 733 817 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 858 AA; 95466 MW; 11F60F51AC306DE6 CRC64; MASSEVSMKG NRGGDNFSSS AFSDPKETRN GEGQKSNSSR PAAAERAVDP EAALYRELWH ACAGPLVTVP RQDDRVFYFP QGHIEQVEAS TNQAAEQQMP LYDLPSKLLC RVINVDLKAE ADTDEVYAQI TLLPEANQDE NAIEKEAPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHANEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRTSPSEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDSDITRWP KSKWRSLKVR WDETSSIPRP DRVSPWKIEP ALAPPALSPV PMPRPKRPRS NIAPSSPDSS MLTREGTTKA NMDPLPASGL SRVLQGQEYS TLRTKHTESV ECDAPENSVV WQSSADDDKV DVVSCSRRYG SENWMPSARH EPTYTDLLSG FGANIEPSHG QRIPFYDHSS SPSMPAKNIL SDPEGKFDFL ANQWQMMQSG LSLKLHESPK VPAATDASFQ GRGNVKYSEY PVLNGLSTEN AGGNWPIRPR ALNYYEEVVH AQAQAQAQAQ AREQATKQPV TIQEETAKSR EGNCRLFGIP LSNNMNGTDS AMSQRSNLND AAGLTQLASP KVQDLPDQSK GSKSTNDHRE QGRPFQTNNP HPKDAHTKSN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL IAELDRLFEF NGELMAPKKD WLIVYTDDEN DMMLVGDDPW QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEGVVGEGSD AKDAKSASNP SLSSAGNS // ID D7MLD4_ARALL Unreviewed; 332 AA. AC D7MLD4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 41. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH42982.1}; GN ORFNames=ARALYDRAFT_496902 {ECO:0000313|EMBL:EFH42982.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH42982.1; -; Genomic_DNA. DR RefSeq; XP_002866723.1; XM_002866677.1. DR STRING; 59689.fgenesh2_kg.8__2718__AT5G66980.1; -. DR EnsemblPlants; fgenesh2_kg.8__2718__AT5G66980.1; fgenesh2_kg.8__2718__AT5G66980.1; fgenesh2_kg.8__2718__AT5G66980.1. DR GeneID; 9302795; -. DR Gramene; fgenesh2_kg.8__2718__AT5G66980.1; fgenesh2_kg.8__2718__AT5G66980.1; fgenesh2_kg.8__2718__AT5G66980.1. DR KEGG; aly:ARALYDRAFT_496902; -. DR OrthoDB; EOG09360IKT; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 218 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 218 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 38476 MW; EFE38559C3DF05CD CRC64; MVEETAGKDL EFFKVFLPEF SSHELVIPPA FIDILDKELP KEAFLVDEIG RLWCVETKTE DTEERFCVLF KKGWESFAND QSLEFGDFLV FRYDGDSRFS VTIFAKDGCK KDIGVVTTTD RSRVSVDEKE PVDISTEPEL RKDCGHRINQ KRKRDSVNED PRVMVNNKPD YVSTNKTKPE HREKTQRTVN RAGDPCDISW CPEKEHNGFE ESVYKPKHPH FLRNITIASL QKLEIPLTFL RSNGIELEEE VGLCDENGKK WPLKIVNHGR GVKFSHESWL CFCKSHNMML THKCLFEFIV PSNGRCNEIQ VRIVSGRLPT TMTRHKYQVL AM // ID D7MNV0_ARALL Unreviewed; 297 AA. AC D7MNV0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH42484.1}; GN ORFNames=ARALYDRAFT_332063 {ECO:0000313|EMBL:EFH42484.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH42484.1; -; Genomic_DNA. DR RefSeq; XP_002866225.1; XM_002866179.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_8001406; fgenesh1_pm.C_scaffold_8001406; fgenesh1_pm.C_scaffold_8001406. DR GeneID; 9300602; -. DR Gramene; fgenesh1_pm.C_scaffold_8001406; fgenesh1_pm.C_scaffold_8001406; fgenesh1_pm.C_scaffold_8001406. DR KEGG; aly:ARALYDRAFT_332063; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 34292 MW; 92E68533862E6799 CRC64; MELENGFPPY PDFLKIFNSH EHAQRLVIPR GYNKYYPNPL PQTAVLKKPE GSFWNVKWTI SQEETIRFQE GWEKFVKDNG LIDRDFLLFT YDGCRSFWVR IHRNGLPLEP TAPIKIQEIS DDEDDTIGHG DHHMEEGDSH ENMIVSLSLG SSDEADDDDD YDTTICEVNK ASESSKKGRL ARKHRADSIA ASIDPETYLD DPKNPFFIST SSCSRRVLVI ARQVIKDYDL NFDGTIKLID GFGELTRKVG KWKDRVVVYK WDEMFTRNKA NQGDAIICEV IREEDVVRSI KVHFVKN // ID D7MPM5_ARALL Unreviewed; 267 AA. AC D7MPM5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH40819.1}; GN ORFNames=ARALYDRAFT_685476 {ECO:0000313|EMBL:EFH40819.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH40819.1; -; Genomic_DNA. DR RefSeq; XP_002864560.1; XM_002864514.1. DR EnsemblPlants; Al_scaffold_0008_2296; Al_scaffold_0008_2296; Al_scaffold_0008_2296. DR GeneID; 9300636; -. DR Gramene; Al_scaffold_0008_2296; Al_scaffold_0008_2296; Al_scaffold_0008_2296. DR KEGG; aly:ARALYDRAFT_685476; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30869 MW; F33BB2205CC4A782 CRC64; MAYEEARKLR LQENHKRFQL NFAALPQFQL LQQRNPRPID KALFATAEPR RSSRVRTVIS SYRDDVAVDT GRTSNLRRSR HSSTWATYIS RPLHECKFAS YEEKVGALNA AEKFQSRLKS PHPSFVKSMV RSHVYSCFWL GLPSRFCVDN FPEETMEIVL EDEEGEEYEA VYIGRRSGLS GGWKRFALDH KLDDGDALLF QLVEPKRFKI YVFKGNENAN LTSAGKRGRA TSEEEEEDKD VEESCDDEHS SRATKRPSAR LLRKRKA // ID D7MQ42_ARALL Unreviewed; 253 AA. AC D7MQ42; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH42040.1}; GN ORFNames=ARALYDRAFT_918037 {ECO:0000313|EMBL:EFH42040.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH42040.1; -; Genomic_DNA. DR RefSeq; XP_002865781.1; XM_002865735.1. DR STRING; 59689.scaffold_801437.1; -. DR EnsemblPlants; scaffold_801437.1; scaffold_801437.1; scaffold_801437.1. DR GeneID; 9300126; -. DR Gramene; scaffold_801437.1; scaffold_801437.1; scaffold_801437.1. DR KEGG; aly:ARALYDRAFT_918037; -. DR OrthoDB; EOG09360NZK; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 244 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 253 AA; 29544 MW; 6D0BFA2BF45F05F7 CRC64; MATLTDETTS LTQKEVNVAA ELLIELSQYQ PRYRRQSPEE KDTDDEEDID DEDDTDDEVA STPLLQVSQA HQKKSRKREE KVSDKNQPKR VKKQSIMKIN IKDFSEETRR SIEVWYKAEI DPQEIFGDNE VTRQFSKPIK KQLMSSDVDK DQSRLMLSKE QVKEKMLPFL EESENPVKGV DVSVYGPDGK VQQMKFKFWN GDKTPVLTTG WKEFVAKCGL LMTSDFVTVW MFRHIETRNI CFAIHRARFP LKN // ID D7MQM8_ARALL Unreviewed; 289 AA. AC D7MQM8; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH39642.1}; GN ORFNames=ARALYDRAFT_330738 {ECO:0000313|EMBL:EFH39642.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH39642.1; -; Genomic_DNA. DR RefSeq; XP_002863383.1; XM_002863337.1. DR EnsemblPlants; fgenesh1_pm.C_scaffold_8000081; fgenesh1_pm.C_scaffold_8000081; fgenesh1_pm.C_scaffold_8000081. DR GeneID; 9299459; -. DR Gramene; fgenesh1_pm.C_scaffold_8000081; fgenesh1_pm.C_scaffold_8000081; fgenesh1_pm.C_scaffold_8000081. DR KEGG; aly:ARALYDRAFT_330738; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 33382 MW; 458C1423C2854763 CRC64; MATNPDFLRC KEERNNESFF KVLQSVVDVS SETLRALPHD FVRSFTDKEL FGKMKIRTQW GRSWEVGISK NPRFYYMEKS GWDRFVRDNS LGNNEFITFT HKGNMHFTLN IFKLDGKEMM QPPQSRALLA SSSRFKTEQG EDDKKEEVVS ELSDRGRTTA AESNGRKLNL RKKAAEESQE SKRTEKLGAF SLVIFSTATE FTSLVKQGYL KFLRLRTSVA KDHMPDEKTM FKIHHPNGKK CWDVVYLGRF GVFSGGWSRL VKEYPLVVGD TCKFTFIKPE ELLLVVSKP // ID D7MRH4_ARALL Unreviewed; 211 AA. AC D7MRH4; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 41. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH41754.1}; GN ORFNames=ARALYDRAFT_331130 {ECO:0000313|EMBL:EFH41754.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH41754.1; -; Genomic_DNA. DR RefSeq; XP_002865495.1; XM_002865449.1. DR STRING; 59689.fgenesh1_pm.C_scaffold_8000473; -. DR EnsemblPlants; fgenesh1_pm.C_scaffold_8000473; fgenesh1_pm.C_scaffold_8000473; fgenesh1_pm.C_scaffold_8000473. DR GeneID; 9301569; -. DR Gramene; fgenesh1_pm.C_scaffold_8000473; fgenesh1_pm.C_scaffold_8000473; fgenesh1_pm.C_scaffold_8000473. DR KEGG; aly:ARALYDRAFT_331130; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 211 AA; 24211 MW; FD6ECDB6A59CC213 CRC64; MVVSKQSKYE EFRLKRVEEN KKRMEALNLQ KLSQNLNSTS VKNSPMKKRS IPRTPEKQMV DVQRIQIRRR GLSKRRDLSN RVYISEEIRE EAFSRAEKFQ DELGSGHPSF VKSMLQSHVS GGFWLGLPVQ FCRSHLGKQD GVITLIDEEG EEYETIYLAR KNGLSGGWMG FAIAHNLAYG DTLVFELVRR TAFKIYITRV GSSGESSKDM S // ID D7MT68_ARALL Unreviewed; 243 AA. AC D7MT68; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH42630.1}; GN ORFNames=ARALYDRAFT_919255 {ECO:0000313|EMBL:EFH42630.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH42630.1; -; Genomic_DNA. DR RefSeq; XP_002866371.1; XM_002866325.1. DR EnsemblPlants; scaffold_802655.1; scaffold_802655.1; scaffold_802655.1. DR GeneID; 9300746; -. DR Gramene; scaffold_802655.1; scaffold_802655.1; scaffold_802655.1. DR KEGG; aly:ARALYDRAFT_919255; -. DR OrthoDB; EOG09360MYO; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 243 AA; 27855 MW; 49AEC252E5AD37C7 CRC64; MNKGNFGDYC LPKFFKVYLP DESGDDLVLP ISFNSCLPKP LPETVTVRSI YGKVWKLVLR KCGSEVESFV MVNGWKSFVK DEDLKGGDFL EFEFDGSRLF NFCIYEHGTL CKRIRRSSEQ SEEIKMESDS DEKNQYLDDR ENPSFTLTLN PKKKSQLLIP ARVIKDYDLH FPESITLVDP LVNKFGTLEK KIKIQTNGSV FVKGFGSIIR RNQVKTTDKM MCEIKKTGDN NLVQTIKIHI ISG // ID D7MT69_ARALL Unreviewed; 291 AA. AC D7MT69; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 41. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH42631.1}; GN ORFNames=ARALYDRAFT_496153 {ECO:0000313|EMBL:EFH42631.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH42631.1; -; Genomic_DNA. DR RefSeq; XP_002866372.1; XM_002866326.1. DR EnsemblPlants; fgenesh2_kg.8__1969__AT5G60140.1; fgenesh2_kg.8__1969__AT5G60140.1; fgenesh2_kg.8__1969__AT5G60140.1. DR GeneID; 9302446; -. DR Gramene; fgenesh2_kg.8__1969__AT5G60140.1; fgenesh2_kg.8__1969__AT5G60140.1; fgenesh2_kg.8__1969__AT5G60140.1. DR KEGG; aly:ARALYDRAFT_496153; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 33115 MW; 01A4ABAEE5F786A9 CRC64; MNHGNYSDGS TSKFFKPYLP SESGDDLMLP IYFNSCLPKP LPETVNVRSI YGKVWKLVLR KCGGEVERFV MVNGWKKIVR DEDLKGGDLL AFEFDGSRCF NLCIYERETM CKKLKRSSEQ SEEIIEVGSD GEEETLASDD SDDSDNDYAV EDDDVAEDDD GLEDEDEVEA EDDDDVKAED DDDNDERQYL DHHNNPYFTM TLNPKKKSQL HIPAYVIKDY DLNFPARITV MDQLGALEKA IKIQKNGSIF VKGFGSVIRR NKMKMTDKMI CELKRTGSNL VHTIKVNIIS G // ID D7MT70_ARALL Unreviewed; 221 AA. AC D7MT70; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH42632.1}; GN ORFNames=ARALYDRAFT_919257 {ECO:0000313|EMBL:EFH42632.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH42632.1; -; Genomic_DNA. DR RefSeq; XP_002866373.1; XM_002866327.1. DR EnsemblPlants; scaffold_802657.1; scaffold_802657.1; scaffold_802657.1. DR GeneID; 9302447; -. DR Gramene; scaffold_802657.1; scaffold_802657.1; scaffold_802657.1. DR KEGG; aly:ARALYDRAFT_919257; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25707 MW; 0C31CB60021FE004 CRC64; MNRGNSGGNC LPKFFKVYLP DESGDDLELP ISFNSFLPKS LPKNVIVRSI YGNIWKMALK KCCGHVERFT MVNGWKKIVK NEDLKGGEFL EFEFDGSWCF NFCIYGRATF KKLRSSVHYL DNHMNPFFTV NQHRQIKYNL LRIPTKVITK SGLHFPEFIN LIDPLEKMFG KLKRKVEGQT IKGFRSIIRR NNVKLTDKVI CELVKEMDGL VREIKVHVIR G // ID D7MTU6_ARALL Unreviewed; 791 AA. AC D7MTU6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=ARALYDRAFT_496192 {ECO:0000313|EMBL:EFH42640.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348720; EFH42640.1; -; Genomic_DNA. DR RefSeq; XP_002866381.1; XM_002866335.1. DR STRING; 59689.fgenesh2_kg.8__2008__AT5G60450.1; -. DR EnsemblPlants; fgenesh2_kg.8__2008__AT5G60450.1; fgenesh2_kg.8__2008__AT5G60450.1; fgenesh2_kg.8__2008__AT5G60450.1. DR GeneID; 9300763; -. DR Gramene; fgenesh2_kg.8__2008__AT5G60450.1; fgenesh2_kg.8__2008__AT5G60450.1; fgenesh2_kg.8__2008__AT5G60450.1. DR KEGG; aly:ARALYDRAFT_496192; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 668 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 172 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 87909 MW; D39940338889471D CRC64; MEFDLNTEIA EVEEEENDDV GVGGTRIDRG RLGISPSSSS SCSSGSSSSS TGSASSIYSE LWHACAGPLT CLPKKGNVVV YFPQGHLEQD AMVSYSSPLE IPKFDLNPQI FCRVVHVQLL ANKETDEVYT QVTLLPLQEF SMLNTEGKEV KELGGDEERN VSSSVKRTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFAP LDYKQQRPSQ ELIAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL ASGDAVLFLR DEGGELRLGI RRAARPRNGL PDSIIEKNSC SNILSLLANA VSTKSMFHVF YSPRATHAEF VIPYEKYITS IRNPICIGTR FRMRFEMDDS PERRCAGVVT GVCDLDPYRW PNSKWRCLLV RWDESFVSDH QERVSPWEID PSISLPHLSI QSSPRPKRPW AGLLDTTPPG NPITERGGFL DFEESVRPSK VLQGQENIGS ASPSQGFDVM NRRILDFAMQ SHASPVLLSS RVKDRFGEFV DATALNPACS GVMDLDRFPR VLQGQEICSL KSFPQFAGFS PAVASGKPNL GYTDPFAYQA NKSSFYPLAL QGIRSTHVPY QNPYNAGNQS SGHPSRAINF GEETRKFDAQ NGGGLPNNVT ADLPFKIDMM GKQKGSDFDM NASSGCKLFG FSLPVETPAS NPQSSSKRIC TKVHKQGSQV GRAIDLSRLN GYDDLLTELE RLFNMEGLLR DPEKGWRILY TDSENDMMVV GDDPWHDFCN VVWKIHLYTK EEVENANDDN KSCLEQAAIM MEASKSSSVS QPDSSPTITR V // ID D7MVQ9_ARALL Unreviewed; 142 AA. AC D7MVQ9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH39367.1}; DE Flags: Fragment; GN ORFNames=ARALYDRAFT_655509 {ECO:0000313|EMBL:EFH39367.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348733; EFH39367.1; -; Genomic_DNA. DR RefSeq; XP_002863108.1; XM_002863062.1. DR EnsemblPlants; Al_scaffold_0022_1; Al_scaffold_0022_1; Al_scaffold_0022_1. DR GeneID; 9299184; -. DR Gramene; Al_scaffold_0022_1; Al_scaffold_0022_1; Al_scaffold_0022_1. DR KEGG; aly:ARALYDRAFT_655509; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 142 142 {ECO:0000313|EMBL:EFH39367.1}. SQ SEQUENCE 142 AA; 16283 MW; C167655309EDE377 CRC64; MADQSLLHSP IKPHFFKPLL EGFRTHLVLC STLFSYISEH NIPVAFFSKH VEGKNDQNKT VNLRSDASEK TWLVKMDGLN LTDGWEDFAF SHDLRIGDIV VFRHEGEMVF HVTALGPSCC EIQYYTSSHN INDDDRNDQT NI // ID D7MWS0_ARALL Unreviewed; 312 AA. AC D7MWS0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFH39015.1}; GN ORFNames=ARALYDRAFT_497309 {ECO:0000313|EMBL:EFH39015.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL348844; EFH39015.1; -; Genomic_DNA. DR RefSeq; XP_002862757.1; XM_002862711.1. DR EnsemblPlants; fgenesh2_kg.181__3__AT2G46870.1; fgenesh2_kg.181__3__AT2G46870.1; fgenesh2_kg.181__3__AT2G46870.1. DR GeneID; 9298831; -. DR Gramene; fgenesh2_kg.181__3__AT2G46870.1; fgenesh2_kg.181__3__AT2G46870.1; fgenesh2_kg.181__3__AT2G46870.1. DR KEGG; aly:ARALYDRAFT_497309; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35090 MW; 82452F94FF7A4FC6 CRC64; MMTDLSLTRD EDEEEEAKPL EEEGAGTREV AEREHMFDKV VTPSDVGKLN RLVIPKQHAE RFFPLDSSSN EKGLLLNFED LTGKSWRFRY SYWNSSQSYV MTKGWSRFVK DKKLDAGDIV SFQRCVGDSG RDSRLFIDWR RRPKVPDHPH FAAGAMFPRF YSFPSTSYNL YNHQQQRHHH GGGYNYHQIP REFGYGYFVR SVDQRNNPAA AVADPLVIES VPVMMHGRAN QELVGTAGKR LRLFGVDMEC GESGMTNSTE EESSSSGGSL PRGGGGGGAS SSSFFQLRLG SSSEDDHFTK KGKSSLSFDL DQ // ID D7MXL5_ARALL Unreviewed; 290 AA. AC D7MXL5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:EFH38718.1}; GN ORFNames=ARALYDRAFT_497432 {ECO:0000313|EMBL:EFH38718.1}; OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694}; RN [1] {ECO:0000313|Proteomes:UP000008694} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694}; RX PubMed=21478890; DOI=10.1038/ng.807; RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., RA Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M.E., RA Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., RA Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.; RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome RT size change."; RL Nat. Genet. 43:476-481(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL349025; EFH38718.1; -; Genomic_DNA. DR RefSeq; XP_002862460.1; XM_002862414.1. DR EnsemblPlants; fgenesh2_kg.457__2__AT2G35310.1; fgenesh2_kg.457__2__AT2G35310.1; fgenesh2_kg.457__2__AT2G35310.1. DR GeneID; 9298535; -. DR Gramene; fgenesh2_kg.457__2__AT2G35310.1; fgenesh2_kg.457__2__AT2G35310.1; fgenesh2_kg.457__2__AT2G35310.1. DR KEGG; aly:ARALYDRAFT_497432; -. DR OrthoDB; EOG093615KU; -. DR Proteomes; UP000008694; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008694}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008694}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 33597 MW; 26B0DEBD36526941 CRC64; MARNSDYDMC KEERKRESFF KVLQRVDFSS ENLRALPYDF VRSFSNNELS GKMKIKAQWG SSWEVEICKN PRFYFMEKSG WVKFVRDNAL GDNEFLTFTH KGTMRFTVNI FKQDGKEMLQ PPQSMASMAS SRRRRTKTEQ GISYLATTIT AESNGGENYT RKLNFEKKKA AESQNSKRTE KVFSVRRDSA GASSSSVAEF TIFIKKSYLI FMRIPKSVQS IHMPMQRTIF KIHQPNMKKS WNVVYLVANR GASFSGGWKR LAQEYPVAVG DTCKFSFIKQ HELILFVSKP // ID D7R605_SOLLC Unreviewed; 644 AA. AC D7R605; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 48. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF9 {ECO:0000313|EMBL:ADH03013.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081; RN [1] {ECO:0000313|EMBL:ADH03013.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Fruit {ECO:0000313|EMBL:ADH03013.1}; RX PubMed=21735233; DOI=10.1007/s00299-011-1113-z; RA Wu J., Wang F., Cheng L., Kong F., Peng Z., Liu S., Yu X., Lu G.; RT "Identification, isolation and expression analysis of auxin response RT factor (ARF) genes in Solanum lycopersicum."; RL Plant Cell Rep. 30:2059-2073(2011). RN [2] {ECO:0000313|EnsemblPlants:Solyc08g082630.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g082630.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM037250; ADH03013.1; -; mRNA. DR RefSeq; NP_001234534.1; NM_001247605.1. DR UniGene; Les.5286; -. DR STRING; 4081.Solyc08g082630.2.1; -. DR EnsemblPlants; Solyc08g082630.2.1; Solyc08g082630.2.1; Solyc08g082630.2. DR GeneID; 100736445; -. DR Gramene; Solyc08g082630.2.1; Solyc08g082630.2.1; Solyc08g082630.2. DR KEGG; sly:100736445; -. DR KO; K14486; -. DR OMA; EAMNNKF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 644 AA; 72370 MW; 1981D277B11ABFA5 CRC64; MNSPGKKDAL YHELWQLCAG PVVDVPREGE RVYYFPQGHM EQLVASINQE MDQRVPSFNL KSKVLCRVIN SHFLAEEDND EVYVQITLMP EAPHVPEPTT PDPLIPQDVK PRFHSFCKVL TASDTSTHGG FSVLRKHANE CLPPLDLNQQ TPTQELIAKD LHDVEWRFKH IFRGQPRRHL LTTGWSTFVS SKKLVAGDSF VFLRGNNGQL RVGVKRLVRQ QSSMPSSVMS SQSMHLGVLA TASHAVTTQT MFVVYYKPRT TQFIVGVNKY LEALKHEYAV GMRFKMQFEA EGNPDRRFMG TIVGIDDLSS QWKNSAWRSL KVRWDEPAAI ARPDRVSPWE IKPYVCSIPN VLVPPTAEKN KRHRLHSEIK ISEQPSSSNA SAVWNPSLRS PQFNTFGINS STNCALASLT ESGWQLPHLN TSGMLVDEPE DGRSAPTWCG FPCVLAPQFG QGTNQPIVIP TDGRKCDTKK TCRLFGIDLK SSSISTTEAR LQLQPAGISC VFAERAPPNT VPAGDSDQKS ELSVDFKDQM QGHLRLPLKE VQSKQSCSTR SRTKVQMQGV AVGRAVDLTI LKGYDELTKE LEEMFEIQGE LQSRQKWGIL FTDDEGDTML MGDYPWQDFC NVVRKIFICS SQDMKKLTLS RADS // ID D7SH69_VITVI Unreviewed; 862 AA. AC D7SH69; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 57. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_17s0000g00320 {ECO:0000313|EMBL:CBI15749.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594950; CBI15749.3; -; Genomic_DNA. DR RefSeq; XP_002284543.1; XM_002284507.4. DR STRING; 29760.VIT_17s0000g00320.t01; -. DR PRIDE; D7SH69; -. DR EnsemblPlants; VIT_17s0000g00320.t01; VIT_17s0000g00320.t01; VIT_17s0000g00320. DR GeneID; 100268072; -. DR Gramene; VIT_17s0000g00320.t01; VIT_17s0000g00320.t01; VIT_17s0000g00320. DR KEGG; vvi:100268072; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; D7SH69; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000009183; Chromosome 17. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IEA:EnsemblPlants. DR GO; GO:0010047; P:fruit dehiscence; IEA:EnsemblPlants. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0008285; P:negative regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0048481; P:plant ovule development; IEA:EnsemblPlants. DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants. DR GO; GO:1903288; P:positive regulation of potassium ion import; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 736 818 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 862 AA; 96132 MW; 5E8AAC55424C7E3C CRC64; MASSEVSIKG NCGHGRGESF TSGYSEPNDG GVSRSVAEGQ KGHSSVSGAG KDFETALYTE LWHACAGPLV TVPRERERVF YFPQGHIEQV EASTNQVSDQ QMPVYDLPSK ILCRVINVQL KAEPDTDEVF AQVTLLPEPN QDETAQEKEP LPPPPPRFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP QLDMSRQPPT QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN VPSSVISSHS MHLGVLATAW HAKSTGTMFT VYYKPRTSPA EFIVPFDQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGIEDADPK RWRDSKWRCL KVRWDETSTI PRPDRVSPWK IEPAVTPPAL NPLPVPRPKR PRSNMVPSSP DSSVLTREGS SKVTVDPSPA SGFSRVLQGQ EFSTLRGTFA ESNESDTAEK SVVWPPLLDD EKIDVVSTSR RFGSDNWMHL VRHEPTCTDL LSGFGARTDS SHGFSSFVDQ NDVAANTMKK HLEHESKFNL LAGPWSMMPS GLSLNLLESS IKVPVQGSDM PYQTRGDARF GGFSEYPTLH GHRVELQQGN WLMPPPAQSH FENFAHSREL MPKPILVQKQ EAVKPKDGNC KLFGIPLIGN PVISEPAMSY RSMTNEPAGH LHLAPSAFDS DQKSEQSKGA KSTDNPLAVS EQEKPCQTSL PLSRDVQGKV QSVSTRSCTK VHKQGIALGR SVDLTKFNNY DELIAELDQL FEFGGELMAP KKNWLIVYTD DEGDMMLVGD DPWQEFCGMV RKIYIYTREE VQRMNPGTLN SKNDDNPSVA EGMDAKEVKR QPVPLTSNLE NC // ID D7SHB6_VITVI Unreviewed; 541 AA. AC D7SHB6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI14875.3}; GN OrderedLocusNames=VIT_17s0000g10080 {ECO:0000313|EMBL:CBI14875.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594950; CBI14875.3; -; Genomic_DNA. DR RefSeq; XP_010663041.1; XM_010664739.2. DR RefSeq; XP_010663042.1; XM_010664740.2. DR RefSeq; XP_019081883.1; XM_019226338.1. DR RefSeq; XP_019081884.1; XM_019226339.1. DR RefSeq; XP_019081885.1; XM_019226340.1. DR UniGene; Vvi.35162; -. DR PRIDE; D7SHB6; -. DR EnsemblPlants; VIT_17s0000g10080.t01; VIT_17s0000g10080.t01; VIT_17s0000g10080. DR GeneID; 104882266; -. DR Gramene; VIT_17s0000g10080.t01; VIT_17s0000g10080.t01; VIT_17s0000g10080. DR KEGG; vvi:104882266; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; D7SHB6; -. DR OMA; MECENEA; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000009183; Chromosome 17. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 443 541 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 443 541 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 541 AA; 60966 MW; F80556A7BA3174B7 CRC64; MDCKEEACLE CTKQCLLLHK KKKRPIPNIS SFFKVMIGDK FSEILFLPPK FARTVSALVD EKTHLEDSSG RQWEITVSNL NGSLAFHQGW HAFALDHRLE IGDFVVFHYI MGSHFITQIY DRTGCEKPKY SENGQHKKIT RNKRSPISKD RAFRTIDKGS INEQVSSTSV LSGSDIGIIQ SQCDATDVEK VPMIVENTSN CKNSNGKLKS VCKAEYVEEP YYIIDRDLGY KRGEYRSSIF DLSNFEMQNN EFGADGSKKI VAGVEKSPHH ADKLLISQTE AMVADVYTVA EEVGRKVVAS DASKFETGKK KDSDVVEKII LRHNKDSCDN KVSGQFLTTS AEEPGENGKD SSDLGNEGIK EHQMAEMKII NTHSIDMKGL KKECVEMTSK MHGLEEMIGE RALELMKGLH HHSWNPTRKD NDEVYEVVKT EAVDFIGSPL PIAANLSCIV GTDDRSFLEL PASLPSFSYR GRTKMERKVV VLQDPDKKSW PVLYHERQGF KALTSGWEDF SRANNIQPGD ECVFTLENEL KGIYAVRIVQ K // ID D7SKV9_VITVI Unreviewed; 798 AA. AC D7SKV9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 57. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_06s0004g03130 {ECO:0000313|EMBL:CBI16287.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594951; CBI16287.3; -; Genomic_DNA. DR RefSeq; XP_002285019.2; XM_002284983.4. DR UniGene; Vvi.27140; -. DR STRING; 29760.VIT_06s0004g03130.t01; -. DR PRIDE; D7SKV9; -. DR EnsemblPlants; VIT_06s0004g03130.t01; VIT_06s0004g03130.t01; VIT_06s0004g03130. DR GeneID; 100243320; -. DR Gramene; VIT_06s0004g03130.t01; VIT_06s0004g03130.t01; VIT_06s0004g03130. DR KEGG; vvi:100243320; -. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; D7SKV9; -. DR OMA; QSHANPV; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000009183; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 670 754 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 167 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 798 AA; 88194 MW; 6F83B251D9C10B3E CRC64; MEIDLNHAVT EVEKHAFCNG DCDKASCVCC LSSSSSSSSA SNSSASPDSS SIYLELWHVC AGRLTSLPKK GNVVVYFPQG HLEQAASSSP FPPMDISTFD LPPQIFCRVV NVQLLANKEN DEVYTQVTLL PQPELAGINL EGKELEGLGV DEEGGGGSPT KSTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVEWRFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRGEGGE LRLGIRRAVR PRNGLPDSII GNQNSYPNVL SLAANAVATK SMFHVFYSPR ASHAEFVIPY QKYVKSITNP ISIGTRFKMR YDMDDSPERR SSGVVTGIGD LDPYRWPNSK WRCLMVRWDD DIVSDPQERV SPWEIDPSVS LPPLSIQSSP RLKKLRTSLQ ATPPNNPING GGGFLDFEES VRSSKVLQGQ ENVGFVSPLY GCDKVNRSLD FEMQNPSLAS TGIEKANFCE FMRAPPTTYT GFLESDRFPK VLQGQEIGPL RSLAGKSDFN LGSWGKPNLG CNLFNMYQKP KPNFYPLASE GIRNMYFPYN DIYKGGQDPV MLSYASNFPR ENVPFNPSSI RSGVIGTEVR KLNIPNEPKP PENISAPPNL ETNLKHQKDD TFSGTAAGCK LFGFSLTGET PPNSQNSGKR SCTKVHKQGN LVGRAIDLSR LNGYGDLFSE LERLFGMEGL LRDPDKGWQI LYTDSENDMM VVGDDPWHEF CNVVSKIHIY TQEEVEKMTI GIISDDTQSC LEEAPVILDV SKSSSVGQPD SSPTVIRI // ID D7SVJ3_VITVI Unreviewed; 287 AA. AC D7SVJ3; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 52. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI21292.3}; GN OrderedLocusNames=VIT_14s0068g01290 {ECO:0000313|EMBL:CBI21292.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595232; CBI21292.3; -; Genomic_DNA. DR RefSeq; XP_002275489.2; XM_002275453.3. DR UniGene; Vvi.31342; -. DR STRING; 29760.VIT_14s0068g01290.t01; -. DR PRIDE; D7SVJ3; -. DR EnsemblPlants; VIT_14s0068g01290.t01; VIT_14s0068g01290.t01; VIT_14s0068g01290. DR GeneID; 100244687; -. DR Gramene; VIT_14s0068g01290.t01; VIT_14s0068g01290.t01; VIT_14s0068g01290. DR KEGG; vvi:100244687; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR HOGENOM; HOG000112670; -. DR InParanoid; D7SVJ3; -. DR OMA; VHRKKRM; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000009183; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 32120 MW; D75134B2FACBB422 CRC64; MMEQNEAYAL MAGVGGELSF VTVRGDKTHE GSDRSPPTRD LVAASSFGVQ GRKRMPRQRR SSAINLLTFA PSTSPHVPPP PPARAIDRKW LRFLFEKELK NSDVGSLRRM VLPKKSAETH LPLLEAKEGI LITMYDLDGQ HVWNFKYRFW PNNNSRMYVL ENTGEFVNVH GLQLGDYIML YHDGQTQSLV IEARKASEKN LHADLSKNIA VSDLFLQDLE ANRSNYFLAM DTGTSFVYET TFSNDSPLDF LGGSMTNYPG GSVSNYSRFG ALEGFGSVES LSLDDFC // ID D7TGI7_VITVI Unreviewed; 443 AA. AC D7TGI7; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 10-MAY-2017, entry version 45. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI29609.3}; GN OrderedLocusNames=VIT_12s0035g02120 {ECO:0000313|EMBL:CBI29609.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595990; CBI29609.3; -; Genomic_DNA. DR UniGene; Vvi.30372; -. DR EnsemblPlants; VIT_12s0035g02120.t01; VIT_12s0035g02120.t01; VIT_12s0035g02120. DR Gramene; VIT_12s0035g02120.t01; VIT_12s0035g02120.t01; VIT_12s0035g02120. DR eggNOG; ENOG410IKXA; Eukaryota. DR eggNOG; ENOG411141Y; LUCA. DR InParanoid; D7TGI7; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000009183; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 409 443 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 443 AA; 49928 MW; A0BFAD9462B7C60D CRC64; MSSPPRELPE FCNVYLPEYS SDRLLIPTAF LGHFNGVVPE KAILREFSGR VWLVEVGLIG KDVYFLNGWQ RFRTDNSLEE GVFLVFRYDG SHIFDFKLFG RNQCEKIETD NDQLQAQMQE TEPFQQLVTP SSITPWVCPQ PGKEVDQEVG KKSPFTLPRR KRKAAKLPVT TIYRPRTRQS TKWFTRFNAD DTGIIDLCSL SKESETSDPT NQDFRSTNDF KCDQVSSHQV PISPGGILLA DCNSPVSCGA PCTELTQGSE DNMIPEDFDN FVDSLDDMLA QPLPEALLSP SATDNYQASE DEIAEARIKL SSLLAMDFHL LVSSKDLKEL ALLSSKLQKD PSLDADQLSK LKLIEEIPVT GKVFLEAMQI KEEVNKFFAD LTSSMDKATS LRNEYNASKE DIAMLQVDIN SSLSTLEEID DQIAKLQSRR AELSTALKIK RRK // ID D7TGL8_VITVI Unreviewed; 678 AA. AC D7TGL8; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 53. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_12s0035g01800 {ECO:0000313|EMBL:CBI29640.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595990; CBI29640.3; -; Genomic_DNA. DR RefSeq; XP_010657917.1; XM_010659615.2. DR STRING; 29760.VIT_12s0035g01800.t01; -. DR PRIDE; D7TGL8; -. DR EnsemblPlants; VIT_12s0035g01800.t01; VIT_12s0035g01800.t01; VIT_12s0035g01800. DR GeneID; 100264303; -. DR Gramene; VIT_12s0035g01800.t01; VIT_12s0035g01800.t01; VIT_12s0035g01800. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; D7TGL8; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000009183; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 553 646 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 75389 MW; 01853595D7A18497 CRC64; MALVASNYPS GGPHAGAPCD ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTT HQGLDQQMPS FNLPSKILCK VVHVQLRAEP ETDEVYAQVT LLPEPDQSEI TSPDPPLPEP QRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA ADLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLSNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFIVS LNKYLEARNH KLSVGMRFKM RFEGEEVPER RFSGTIVGVG DKNTSSGWAD SEWRSLKVQW DEPASIFRPE RVSAWELEPL VAAAAPTNLQ PAQRNKRARP PVLPSATPDL SVLGMWKSSV ESPSGFPYCD PHRGRDLYPS PKFSSITKTN SFSFSGNSSP AAVSSNSMYW SNRMETATES FAPAVNKESG EKRRDTGSGC RLFGFQLLDN STLEETLPVL TVGEDQPVPS LDVESDQHSE PSNINRSDIP SVSCEPDKLS LRSPQESQSR QIRSCTKVHM QGIAVGRAVD LTRFDRYEDL LKKLEEMFDI QGELCGLTSI WQVVYTDDED DMMMVGDDPW LEFCSMVRKI FIYTAEEVKR LSPKIKLPAM EEIKPGKLDS DVAVAGTDDQ SSVVGPGC // ID D7TP49_VITVI Unreviewed; 696 AA. AC D7TP49; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 50. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_07s0104g01230 {ECO:0000313|EMBL:CBI32272.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596005; CBI32272.3; -; Genomic_DNA. DR RefSeq; XP_019076425.1; XM_019220880.1. DR PRIDE; D7TP49; -. DR EnsemblPlants; VIT_07s0104g01230.t01; VIT_07s0104g01230.t01; VIT_07s0104g01230. DR GeneID; 100246055; -. DR Gramene; VIT_07s0104g01230.t01; VIT_07s0104g01230.t01; VIT_07s0104g01230. DR eggNOG; ENOG410JAV5; Eukaryota. DR eggNOG; ENOG41113VQ; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; D7TP49; -. DR OMA; QCKNCCS; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000009183; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 602 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 77698 MW; A1D39359D16627FE CRC64; MGSGGDGERM RVDLEGDGLQ SKNIQDENDD LYTELWLGCA GPLVNILRAG QKVVYFPQGH IEQVEAYTNQ DGQMEMPIYN LPSKIFCKVV YVQLKAEACT DEVFAQVTLL PEAKQEWQSP DHGNSQFFPR RTHSYSFSKT LTPSDTNTHG GFSVPKRHAD ECLPPLDMTQ QPPVQELIAK DLHGTEWRFR HIFRGQPKRH LLTSGWSQFV TSKKLVAGDA CIFLRGANGE LRVGVRRATR LQNNVSASVL SGHSMQHGIL ASAFHAISTG TMFTVYFRPW TSPEFIIPYD QYIKSAENNY SVGTRFRMLF EGEECSQQRC AGTIVGIEDV DAIRWPNSEW RRFKVQWDTS DITPCPERVA AWNIEPIEFI KKKHTSILPQ LKRARPTDPL CPAIPILVGD VEHTKIQSGV LQGQENDDIG AHKPDTSKLP SLLVVPPPNS DWGPQHFPMH DPFYQCPGKT ILFQGENPLS SGIANGCSLT FTYCGACDNV GGSRNLSFAN LDSSNCEFQD WRALEPKGNE ASFAQQNRID KFKLFGVNLI NSPAELPSPQ VASSSELQSP CSIPPTSQSS ISESIQASEP SKSVSGDLSD KQCKNCCSVM VRSCTKVLKY GTALGRSIDL ARFDGYDELI IELDQMFDFG GSLMDGSCRW HVTYTDDEGD MMLLGDYPWQ EFRSMVQRIF ICPKEETERL NSATPS // ID D7TPK6_VITVI Unreviewed; 363 AA. AC D7TPK6; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI32429.3}; GN OrderedLocusNames=VIT_03s0063g00630 {ECO:0000313|EMBL:CBI32429.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CBI32429.3; -; Genomic_DNA. DR UniGene; Vvi.32473; -. DR PRIDE; D7TPK6; -. DR EnsemblPlants; VIT_03s0063g00630.t01; VIT_03s0063g00630.t01; VIT_03s0063g00630. DR Gramene; VIT_03s0063g00630.t01; VIT_03s0063g00630.t01; VIT_03s0063g00630. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR HOGENOM; HOG000082939; -. DR InParanoid; D7TPK6; -. DR OMA; MITETIN; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 363 AA; 40987 MW; 9F0080254BD93AC5 CRC64; MSSCKRIRVD TDHITNGNEA KSSVMERAEK VQRNLPSEIP SMIKSMLPSH VTGGFWLGLP KKFCDVHLPK YDTTIILVDK RGAEYKTKFL VGKTGLSGGW RGFSIAHNLL EGDVLVFGLV QPTKFMVYIV RTNGFDEFYI PQENTKKESL SVSTTELGLA ACQSENDSDG HGSEVLERIR FSESAVDFKE VKSMEAFSIL VNGLIINSEF SKHLQTKYYE LCCSQKTYLH DHLLDGLNYK LAAGIISETV NIADAIRASK LTTSRDNFSI WSKTLKAFQE LGMNVGFLRA RLDQLMSFGF VENRKREARL ERVSAEEKIR DLEGSLLHVK EVRKRLNAEI EALDSPAAEK HEMMFQELAK SSW // ID D7TPS7_VITVI Unreviewed; 78 AA. AC D7TPS7; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 10-MAY-2017, entry version 37. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI32500.3}; GN OrderedLocusNames=VIT_03s0063g01420 {ECO:0000313|EMBL:CBI32500.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CBI32500.3; -; Genomic_DNA. DR EnsemblPlants; VIT_03s0063g01420.t01; VIT_03s0063g01420.t01; VIT_03s0063g01420. DR Gramene; VIT_03s0063g01420.t01; VIT_03s0063g01420.t01; VIT_03s0063g01420. DR OrthoDB; EOG09360YHN; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 78 AA; 9138 MW; 8380FBFF58091D41 CRC64; MQRIPQSFSA AGHFPPSKMR VVLRNSAEKA WDVSCIYHAR RHYFSRGWAP FARYNNLKQG DVCIFELVNK DEMQVHVL // ID D7TPS9_VITVI Unreviewed; 231 AA. AC D7TPS9; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI32502.3}; GN OrderedLocusNames=VIT_03s0063g01440 {ECO:0000313|EMBL:CBI32502.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CBI32502.3; -; Genomic_DNA. DR UniGene; Vvi.32481; -. DR STRING; 29760.VIT_03s0063g01440.t01; -. DR PRIDE; D7TPS9; -. DR EnsemblPlants; VIT_03s0063g01440.t01; VIT_03s0063g01440.t01; VIT_03s0063g01440. DR Gramene; VIT_03s0063g01440.t01; VIT_03s0063g01440.t01; VIT_03s0063g01440. DR eggNOG; ENOG410JESD; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; D7TPS9; -. DR OMA; GSSWRID; -. DR OrthoDB; EOG09360YHN; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 141 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 231 AA; 26143 MW; BC0A0BDA45B0E145 CRC64; MTLQRIPPAF IKHLAGDISD RATLTCSSGG HWGVTVWKNP DGTYLEDGWK EFMRENNLGD DEFLVFIYDG DMRFHVKIFE KNGVKRSAPI SDNPTEEETG ASSGKRSRGR PRKYPVGSLQ GPVESSRTQK TRSFTSKFPY FECLMTKSCV EKCFLLTIPK AFSQSHFPPA KLKVVLRNSA GKTWEVNCIY HAKRHSLSGG WSTFVRENSL KQGGTCRFEL VEKNVMQVHV L // ID D7TPT0_VITVI Unreviewed; 355 AA. AC D7TPT0; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 07-JUN-2017, entry version 43. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI32503.3}; GN OrderedLocusNames=VIT_03s0063g01450 {ECO:0000313|EMBL:CBI32503.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CBI32503.3; -; Genomic_DNA. DR UniGene; Vvi.32481; -. DR STRING; 29760.VIT_03s0063g01450.t01; -. DR EnsemblPlants; VIT_03s0063g01450.t01; VIT_03s0063g01450.t01; VIT_03s0063g01450. DR Gramene; VIT_03s0063g01450.t01; VIT_03s0063g01450.t01; VIT_03s0063g01450. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR HOGENOM; HOG000005864; -. DR InParanoid; D7TPT0; -. DR OMA; CILQFDE; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 40881 MW; 4E26B2760E130AFD CRC64; MPEQETLDHS HCRRPSSQPT RSLLFYKLIV SSVLQAKRLR IPQKFVKKSG DQLSAVTTLT LPNGGVWYVG LTKADNKFWF YHGWHEFVEY YSIHVGYFLI FRYEGNSNFN VNIFDLTASE INYPSNNLRN SEKTSHGKQC PASDGEEMND DDDSVEILGS ASPVSLRSKV FDECIDQQPL GKNYNENLHL AKDANSLQVT IRSSRDIGIQ FNSSELTNSE CKRWRVVTME EKKRALHAAE MFQPSNPFCR VILRRSYVHE RFLLHMPSRF AEKYLNGVSK FIKLQTSDGK QWHVRCLSGE SRVKLSKGWT EFVKDNNLEE GDVCVFELIN MEDVVLKVSI FRVLDDARVE TQSSN // ID D7TVI5_VITVI Unreviewed; 682 AA. AC D7TVI5; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_02s0025g01740 {ECO:0000313|EMBL:CBI34510.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596251; CBI34510.3; -; Genomic_DNA. DR UniGene; Vvi.17636; -. DR STRING; 29760.VIT_02s0025g01740.t01; -. DR PRIDE; D7TVI5; -. DR EnsemblPlants; VIT_02s0025g01740.t01; VIT_02s0025g01740.t01; VIT_02s0025g01740. DR Gramene; VIT_02s0025g01740.t01; VIT_02s0025g01740.t01; VIT_02s0025g01740. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; D7TVI5; -. DR OMA; EAMNNKF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000009183; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 570 651 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 75680 MW; DE58DCD314E57A58 CRC64; MMVGFGGEGD DLYAELWKAC AGPLVDVPRR GERVFYFPQG HVEQLEASTN QELSQRIPLF NLPSKILCRV IHIQLRAEQE TDEVYAQITL LPEPDQAEPR SPDPCTPEPP RPTVHSFCKV LTASDTSTHG GFSVLRKHAN ECLPQLDMNQ ATPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDS FVFLRGDNGE LRVGVRRLAR QQSTMPTSVI SSQSMHLGVL ATASHAVATQ TLFIVYYKPR TSQFIIGLNK YLEAVSNGFA VGMRFKMRFE GEDSPERRFS GTIVGGEDFS PEWKDSEWRS LKVQWDEPAS IPRPEKVSPW EIEHYVSSVP QGLAPPGVLK NKRPRSNESP VPETGSAAAS AVWHLGLTQS HDLTQMSSTA EGKRSENHVM WHHKQADIGG PLINSNTACV SRTQTEGSWL SSSHVSASQH QFQDATEDSK SVSAWPALSG YSTLHSSKLT SDTIIDPNGN GKKAVAEMAT SCRLFGFELM NHSSSPPVGK AHGHSISVSS GTDSDQKSDL SKASKEQKQG QSHVSPKEIQ SKQNCYSNTR SRTKVQMQGI AVGRAVDLTA LEGYDELIDE LEEMFEIKGE LRPRYKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS SQDVKKMSPG SKLPISSMEG EGTTISLDST EN // ID D7TY21_VITVI Unreviewed; 305 AA. AC D7TY21; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 10-MAY-2017, entry version 41. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI35396.3}; GN OrderedLocusNames=VIT_10s0071g00270 {ECO:0000313|EMBL:CBI35396.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596260; CBI35396.3; -; Genomic_DNA. DR UniGene; Vvi.9890; -. DR PRIDE; D7TY21; -. DR EnsemblPlants; VIT_10s0071g00270.t01; VIT_10s0071g00270.t01; VIT_10s0071g00270. DR Gramene; VIT_10s0071g00270.t01; VIT_10s0071g00270.t01; VIT_10s0071g00270. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR InParanoid; D7TY21; -. DR OrthoDB; EOG09360NNM; -. DR Proteomes; UP000009183; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 34272 MW; E443C1DBD07ABFE1 CRC64; MDAFFGHIPG GFGRDSVFHA GFMPIQAVFQ NPFMPTAVRA PPLSYNLSAP LSIEVAKRPE MNVFSASQCP KIGNPSDISS SDSIHTQKML RLSMDVSSDR HEIVNLGASD KHELPLLWKN NAPSVTLSDI INSSETRPGS SPPANIHEDD EEIKGKGWLM LVQKELRNTD VGNLGRIVLP KKDAEANLPP LVAKDGLVLQ MEDMKYSVNW KFKYRYWPNN RSRMYVMENT GNFVKMHDLQ PGDLFVVYKD ESSGKYIVRG KKAVKPAHAE DKDGSIHRHR VGEADRDWYR QIWPEQGTSI QLGTL // ID D7UE11_VITVI Unreviewed; 171 AA. AC D7UE11; DT 10-AUG-2010, integrated into UniProtKB/TrEMBL. DT 10-AUG-2010, sequence version 1. DT 10-MAY-2017, entry version 39. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI40976.3}; GN OrderedLocusNames=VIT_07s0255g00080 {ECO:0000313|EMBL:CBI40976.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596776; CBI40976.3; -; Genomic_DNA. DR EnsemblPlants; VIT_07s0255g00080.t01; VIT_07s0255g00080.t01; VIT_07s0255g00080. DR Gramene; VIT_07s0255g00080.t01; VIT_07s0255g00080.t01; VIT_07s0255g00080. DR InParanoid; D7UE11; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000009183; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 171 AA; 19354 MW; C78D2FCF8BDF31A0 CRC64; MDNDSDSSSG GDELKTKEDQ LHQGNERKCK LKQPVEETIA GVRFSQGTPC LGRLSNKVKA RALKAASKFV SNYPFFKIVM QSTYLHSGYL RIPKQFSSTH IKGSSRKAML WASDRFWPVK LLVYPLWSSV LTTGWVDFVK ENALREGDVC VFEMYGSNDV VLKVTFFRCL A // ID D8QMJ3_SELML Unreviewed; 238 AA. AC D8QMJ3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ38587.1}; DE Flags: Fragment; GN ORFNames=SELMODRAFT_66538 {ECO:0000313|EMBL:EFJ31564.1}, GN SELMODRAFT_71153 {ECO:0000313|EMBL:EFJ38587.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ38587.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00585200}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377573; EFJ31564.1; -; Genomic_DNA. DR EMBL; GL377565; EFJ38587.1; -; Genomic_DNA. DR RefSeq; XP_002961048.1; XM_002961002.1. DR RefSeq; XP_002966965.1; XM_002966919.1. DR EnsemblPlants; EFJ31564; EFJ31564; SELMODRAFT_66538. DR EnsemblPlants; EFJ38587; EFJ38587; SELMODRAFT_71153. DR GeneID; 9631843; -. DR GeneID; 9656218; -. DR Gramene; EFJ31564; EFJ31564; SELMODRAFT_66538. DR Gramene; EFJ38587; EFJ38587; SELMODRAFT_71153. DR KEGG; smo:SELMODRAFT_66538; -. DR KEGG; smo:SELMODRAFT_71153; -. DR KO; K09287; -. DR OMA; CDEEEAA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585222}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585208}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}. FT DOMAIN 6 61 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 133 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 61 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 133 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EFJ38587.1}. FT NON_TER 238 238 {ECO:0000313|EMBL:EFJ38587.1}. SQ SEQUENCE 238 AA; 27060 MW; 484D40BEC046A365 CRC64; KLPSSQYKGV VPQPNGRFGA QIYEKHQRVW LGTFDTEVEA AKAYDVAATK IRGNDALTNF PPVDESEPES AFLSLHSKEQ IIDMLRKHTY NQQLIKNTAL DTSSSSSSTT TTNNHNAPKS SSLLAQHHRE HLFFKVVTPS DVGKLNRLVI PKHHAERCFP LAPHEKGLLL SFEDERGKHW RFRYSYWSSS QSYVLTRGWS RFVKDKQLQV GDAVFFDRAT TAGSSCKLFI HWKRKAAS // ID D8QNG6_SELML Unreviewed; 835 AA. AC D8QNG6; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF10A-1 {ECO:0000313|EMBL:EFJ38760.1}; GN ORFNames=SELMODRAFT_437622 {ECO:0000313|EMBL:EFJ38760.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ38760.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377565; EFJ38760.1; -; Genomic_DNA. DR RefSeq; XP_002961221.1; XM_002961175.1. DR UniGene; Smo.3389; -. DR STRING; 88036.EFJ38760; -. DR EnsemblPlants; EFJ38760; EFJ38760; SELMODRAFT_437622. DR GeneID; 9632729; -. DR Gramene; EFJ38760; EFJ38760; SELMODRAFT_437622. DR KEGG; smo:SELMODRAFT_437622; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; D8QNG6; -. DR OMA; PEFCVKS; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 744 824 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 835 AA; 90674 MW; B4E69D0627A72C70 CRC64; MVCVQTAKIA PPLHAPALQR GLPAQHKSLA AATALNMMRS HMASSDPSNS ANKAHSDQPK KGLDSQLWHA CAGGMVQLPP VGAKVIYFPQ GHGEQAAAIP DFPRSGGTIL CRVISVDFLA DAETDEVYAK MKLQPEVAPA PLFGTRMGDD EELVSSPTVV EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSID PPVQTVLAKD VHGEIWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDAI VFLRSASGEL CVGVRRSMRG PGNGDSGISW HSSPGQRSLP QNSSRWEIKS ESGYSELLSG NGSGTSGASF ARNRARVTSK SVLEAASLAA AGQAFEVVYY PRASTAEFCV RASVVKASLE HSWYPGMRFK MAFETEDSSR ISWFMGTISA VQPADPIRWP SSPWRILQVS WDEPDLLQGV NRVSPWQVEL VSTLPMQLPP FSLPRKKIRP LDLQFGESQG GFMGLPMAAL ANNVLGQMNP WQSLSEEVPA GMQGARQERF YGLTLSEFQP KQRVAGLFLD GAYPLDHSMT SRGATTDLRL NNFATTTTTP HDYFQLQQAN IINATNTGRS AYGTPAAATQ SESTAPPSVA PKSGTKRTAT FLLFGKSIDP NYNPEEQQLQ QQQNSGVSGG CSSEGTSHQY KESTSQAQPS SNSSFEDGQA DNNIINNNLG NKNASSGNVT NNTTDMTHKL FTNVTSTSLR LCQGESPDSG VTNESGSSKW MKEHSGADPD DDGVIHCKIF FEKEEVGRTL DLSLFGNYEE LYDRLASMFT MDKSKLSGRV VYRDLEGSTI YIGGEPYGNF VKSVRRLTIL AVPSSSTESR SAQSW // ID D8QS80_SELML Unreviewed; 795 AA. AC D8QS80; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ETT2-1 {ECO:0000313|EMBL:EFJ36889.1}; GN ORFNames=SELMODRAFT_437944 {ECO:0000313|EMBL:EFJ36889.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ36889.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377566; EFJ36889.1; -; Genomic_DNA. DR RefSeq; XP_002961629.1; XM_002961583.1. DR UniGene; Smo.4501; -. DR EnsemblPlants; EFJ36889; EFJ36889; SELMODRAFT_437944. DR GeneID; 9658215; -. DR Gramene; EFJ36889; EFJ36889; SELMODRAFT_437944. DR KEGG; smo:SELMODRAFT_437944; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; D8QS80; -. DR OMA; EIPERRF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 747 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 795 AA; 88238 MW; 133F7D2349381833 CRC64; MLSSSQTYGQ LGTMMHRPTP QRPQPNHGNT NALDSEVWHA CAGPLVCLPR VGDRVVYFPQ GHIEQVAAST NQSADMQMPH YNLPSQIYCR LLNLTLGADR ETDEVFAQMT LVPENEQGDQ SIDTEDELSP CPKRKLSMFC KNLTSSDTST HGGFSVPRRA AEECLPPLDY QQSPPAQELV AKDLHGVEWK FRHIYRGQPR RHLLTTGWSV FVSQKKLVAG DAVLFLRGDN GELRIGVRRA VRQQNSVTSS SLLSSHSMHL GVLAAAAHAV STKTMFTIFY NPRASPAEFV VPYHKYVKAF THNLSVGMRF KMRFETEESS ERRYMGTITG VGDIDSDRWI NSKWRCLQVG WDEQTANERQ ERVSPWEIEP FIAPNVANPP TTQRVKKFRP NTPANEFPTG KNNSDSAQAM HMRALQGSHA LGMPSKEEEG LRGSSPFAVW PYNRDDLKGE SWIQLRTADA PVMDMFGNII APAGRHMDSS NVEMHQQLRH CLQQLRDQKS CHFDASNSQV QLSPRLSSFS PYQQGDAADL HLSTPRPTNH GVVRDSSWLS PLGPTQTDAQ AYVAADTTLS MQFSKSEMTT ERMHIDSNPD HEPREHSCKI FGFSLIEKSP PAASRNPEEA RLNPSRGGEQ MTRCSGRAGP SAGNGSLEHE RCASRPASAW SLRTCTKVHL QGAAVGRAVD LSKFSCYSEL LLELQQLFGL DNALDDPDSG WQVVYTDNEG DMLLVGDDPW QEFCNMVRNI RILSPAEVEK LTQGALGKSA VVEEEPSTRD ASKLSDHQDS SSPPAISTKG AASDL // ID D8QWZ3_SELML Unreviewed; 538 AA. AC D8QWZ3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ35319.1}; GN ORFNames=SELMODRAFT_405321 {ECO:0000313|EMBL:EFJ35319.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ35319.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377568; EFJ35319.1; -; Genomic_DNA. DR RefSeq; XP_002963448.1; XM_002963402.1. DR EnsemblPlants; EFJ35319; EFJ35319; SELMODRAFT_405321. DR GeneID; 9655445; -. DR Gramene; EFJ35319; EFJ35319; SELMODRAFT_405321. DR KEGG; smo:SELMODRAFT_405321; -. DR eggNOG; ENOG410IYW4; Eukaryota. DR eggNOG; ENOG411293H; LUCA. DR InParanoid; D8QWZ3; -. DR OrthoDB; EOG09360IHL; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006506; P:GPI anchor biosynthetic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013233; PIG-X/PBN1. DR Pfam; PF02362; B3; 2. DR Pfam; PF08320; PIG-X; 1. DR SMART; SM01019; B3; 2. DR SMART; SM00780; PIG-X; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 538 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5003121297. FT DOMAIN 225 316 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 448 538 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 225 316 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 448 538 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 538 AA; 60267 MW; A02E04A7A9D0C12D CRC64; MKPPRAILLV AVLGAIAHLI RGNEVVKFAR TLEGSGSHRE LKTDISLQLD DKFQGDSCRL SLVENLPSSV FADTFQLQRL TRMGRYEAAH VSGDLDLERP AFFSGPVTVR IQVSLDQNAN VFHAETSLPL HARYAPLGID SYHLINLSSP SVAVSCKKNA EELQLELAAS EEVQWPIPAG NPDDASTVNR FTALAAAAGT LVLCSISVMK KRVVILEMAD EREKVWFVRV IHKPVRFSHL SVPRRLAKDQ LKKLCNTTVF LQDERGQEWP IGTNEHAYFC SGWNRLARDK SLKGGEVILF MHEGRGRLRF KIFAADGADR QDFGTERFCG RPPRIGGSKH RKIVRKPRIV KKPAPKLAVP VCVQAVVKEE VEESGMLGDA EPAVVAMAEE QSPDDHEPAV EPSPELPHHR ESSPPFLERN LRSRPPLVRS KLHLHRLAMD AALAYKSDKP TFIVKIQGDE TVLSVRREFA ERYLPRKPAT TSVVDGDSTL WTVKWLGIRA CVLGAGWPEF ARHHVLKKLD ICLFELITQR AFQVRIYR // ID D8QZP3_SELML Unreviewed; 774 AA. AC D8QZP3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ETT1-1 {ECO:0000313|EMBL:EFJ34439.1}; GN ORFNames=SELMODRAFT_166729 {ECO:0000313|EMBL:EFJ34439.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ34439.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377569; EFJ34439.1; -; Genomic_DNA. DR RefSeq; XP_002964106.1; XM_002964060.1. DR UniGene; Smo.3261; -. DR EnsemblPlants; EFJ34439; EFJ34439; SELMODRAFT_166729. DR GeneID; 9654663; -. DR Gramene; EFJ34439; EFJ34439; SELMODRAFT_166729. DR KEGG; smo:SELMODRAFT_166729; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; D8QZP3; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 178 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 658 739 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 178 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 774 AA; 85927 MW; 1F402FF722028715 CRC64; MRESGIGSPR MYATPGGGAA ATSGTIFARP AGPRPDGSSS SPQVPAMGRQ IPQRVSAFSG YVSSGSSGGS SLDSEAWHAC AGPLVCLPLV GDRVVYFPQG HIEQVLASTN QNAADLQIPQ YNLPSQIFCR VLNLSLGAYR ETDEVYAQMT LVPENEQLDQ SLELDEPTAS SKAKLSMFSK NLTSSDTSTH GGFSVPRRAA EECFPRLDYQ QTPPAQEIIA KDLHGVEWKF RHIYRGQPRR HLLTTGWSVF VSQKKLVAGD TVLFVRGDNG ELRIGIRRAV RTQSSVTSSS LLSSHSMQIG VLAAAAHAVS TKTMFTVFYN PRASPAEFVV PYHKYVKSFK MNILIGMRFK MRFETEDSSE RSVRYMGTIT GIGDIDPARW PGSKWRFLKV GWDEHAASER QERVSPWEIE PFIAPNVTPP VSTKRFRPTM LTDISVSRKS YDNHLRQILQ ANRNLQTSHK YEADERENFL LKSPTALYSE AKVTSRVTEG HSVPGFPSGL PSPGNEGLPS HRKVDMHQQQ LRLCVQQFRE QKVPLQFEKP QQPSPTSSFA SRQAALSCPL YLQPQHTTDN SFLKLLMSPT LASLQQAPRV EEPLARGNAN DSDRECKLFG FSLKPKTALA STVKDDVHKD LESEASGFRK CFTGQNWNQQ QQQQQPSRTC TKVHKHGAVG RALDLSKFRG YTQLLEELQH LFGIDESLNG SEWQAVYVDN EGDMLLVGDD PWEEFCSTVR CIRILSPAEI QKLTVQARNS STEEPSSRLS DQQDSSSPPA TSDE // ID D8R1E2_SELML Unreviewed; 396 AA. AC D8R1E2; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ETT2-2 {ECO:0000313|EMBL:EFJ33538.1}; GN ORFNames=SELMODRAFT_438973 {ECO:0000313|EMBL:EFJ33538.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ33538.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377570; EFJ33538.1; -; Genomic_DNA. DR RefSeq; XP_002964700.1; XM_002964654.1. DR EnsemblPlants; EFJ33538; EFJ33538; SELMODRAFT_438973. DR GeneID; 9655015; -. DR Gramene; EFJ33538; EFJ33538; SELMODRAFT_438973. DR KEGG; smo:SELMODRAFT_438973; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; D8R1E2; -. DR OMA; HENTNQA; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 396 AA; 44637 MW; B32FAEBE25126171 CRC64; MLSSSQTYGQ LGTMMHRPTP QRPQPNHGNT NALDSEVWHA CAGPLVCLPR VGDRVVYFPQ GHIEQVAAST NQSADMQMPH YNLPSQIYCR LLNLTLGADR ETDEVFAQMT LVPENEQGDQ SIDTEDELSP CPKRKLSMFC KNLTSSDTST HGGFSVPRRA AEECLPPLDY QQSPPAQELV AKDLHGVEWK FRHIYRGQPR RHLLTTGWSV FVSQKKLVAG DAVLFLRGDN GELRIGVRRA VRQQNSVTSS SLLSSHSMHL GVLAAAAHAV STKTMFTIFY NPRASPAEFV VPYHKYVKAF THNLSVGMRF KMRFETEESS ERRYMGTITG VGDIDSDRWI NSKWRCLQVG WDEQTANERQ ERVSPWEIEP FIAPNVANPP TTQRARTTQI LPKRCI // ID D8R334_SELML Unreviewed; 105 AA. AC D8R334; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ33209.1}; DE Flags: Fragment; GN ORFNames=SELMODRAFT_49098 {ECO:0000313|EMBL:EFJ14479.1}, GN SELMODRAFT_69265 {ECO:0000313|EMBL:EFJ33209.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ33209.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377627; EFJ14479.1; -; Genomic_DNA. DR EMBL; GL377571; EFJ33209.1; -; Genomic_DNA. DR RefSeq; XP_002965789.1; XM_002965743.1. DR RefSeq; XP_002984429.1; XM_002984383.1. DR EnsemblPlants; EFJ14479; EFJ14479; SELMODRAFT_49098. DR EnsemblPlants; EFJ33209; EFJ33209; SELMODRAFT_69265. DR GeneID; 9644590; -. DR GeneID; 9655373; -. DR Gramene; EFJ14479; EFJ14479; SELMODRAFT_49098. DR Gramene; EFJ33209; EFJ33209; SELMODRAFT_69265. DR KEGG; smo:SELMODRAFT_49098; -. DR KEGG; smo:SELMODRAFT_69265; -. DR OMA; HESEQWA; -. DR OrthoDB; \N; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EFJ33209.1}. FT NON_TER 105 105 {ECO:0000313|EMBL:EFJ33209.1}. SQ SEQUENCE 105 AA; 12231 MW; 891FAAB5F227F628 CRC64; LFSKLLTNSD VNKLNRLVIH KRHARECFPK LSEAAKPGNP DSSIPDPNET VLFFHDHESE QWAFNFKYWG SSKTYVFSKG WIQYVKRYNL ACGDEVSFFR EEPSG // ID D8R4W3_SELML Unreviewed; 387 AA. AC D8R4W3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Putative uncharacterized protein HSI2L-1 {ECO:0000313|EMBL:EFJ32382.1}; DE SubName: Full=Putative uncharacterized protein HSI2L-2 {ECO:0000313|EMBL:EFJ20862.1}; GN Name=HSI2L-1 {ECO:0000313|EMBL:EFJ32382.1}; GN Synonyms=HSI2L-2 {ECO:0000313|EMBL:EFJ20862.1}; GN ORFNames=SELMODRAFT_451634 {ECO:0000313|EMBL:EFJ20862.1}, GN SELMODRAFT_451635 {ECO:0000313|EMBL:EFJ32382.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ32382.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377601; EFJ20862.1; -; Genomic_DNA. DR EMBL; GL377572; EFJ32382.1; -; Genomic_DNA. DR RefSeq; XP_002966355.1; XM_002966309.1. DR RefSeq; XP_002978205.1; XM_002978159.1. DR STRING; 88036.EFJ32382; -. DR EnsemblPlants; EFJ20862; EFJ20862; SELMODRAFT_451634. DR EnsemblPlants; EFJ32382; EFJ32382; SELMODRAFT_451635. DR GeneID; 9652538; -. DR GeneID; 9653221; -. DR Gramene; EFJ20862; EFJ20862; SELMODRAFT_451634. DR Gramene; EFJ32382; EFJ32382; SELMODRAFT_451635. DR KEGG; smo:SELMODRAFT_451634; -. DR KEGG; smo:SELMODRAFT_451635; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR OMA; CASAHEE; -. DR OrthoDB; EOG0936054P; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 194 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 194 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 387 AA; 42276 MW; 6BFF862177B1089C CRC64; MDHLKRKVCW NTKCPATNSS VWKSGWGLQS GRIADLCDYC GLVYEQSRFC ETFHSSDAGW RTCNNCKKPV HCGCIASVSS FVHLDFGGVE CVSCAKGLTP CKTVEGPANV SSESTSLTRV KASDQSSEDE QAASLAGSVK RQKLESPEEK EPQDVPAIDE LGGCHKQLGP DVVTDKERQQ QTPDGSSTTV VPLFEKTLTA SDAGRIGRLV LPKACAEAFF PPISSPEGIP IKMSDSKGQE WQFQFRFWPN NSSRMYVLEG ITPCVKALQL QAGDVVTFSR IDPGGKMVMG YRRNAVVLKP KAKAVKDSTT AFAPGFVNKS LASREGPVSF SSPRTPECST ARSAWEEAQD WLSPPPGITP SIMTIDGHRF EEYEVRVTIK SQFLDVF // ID D8R649_SELML Unreviewed; 530 AA. AC D8R649; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Putative uncharacterized protein ABI3C-1 {ECO:0000313|EMBL:EFJ32605.1}; GN Name=ABI3C-1 {ECO:0000313|EMBL:EFJ32605.1}; GN ORFNames=SELMODRAFT_451619 {ECO:0000313|EMBL:EFJ32605.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ32605.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377572; EFJ32605.1; -; Genomic_DNA. DR RefSeq; XP_002966578.1; XM_002966532.1. DR EnsemblPlants; EFJ32605; EFJ32605; SELMODRAFT_451619. DR GeneID; 9652812; -. DR Gramene; EFJ32605; EFJ32605; SELMODRAFT_451619. DR KEGG; smo:SELMODRAFT_451619; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 316 429 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 316 429 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 58048 MW; F42EDBAC893BEAD8 CRC64; MAVSCAVYNL PSDFPLLDVK IESVSISGRE VLDCCDDFSF QDFSPIAQHS GAAASEASVA FDHPQKDPAS IIPLEAPAPG FQLVDNYGGA AAATLSVDGP QDCKPLVDLW EVPDAKKESM ASIPAGSSAR LVEWIGEVPA AATMMDWQQH QAQQHHSIVI GDEESATASI EDQYWFSCPQ LECQVLQSQQ QQQGDAIGSS TNLYAFRRHC PAAILDNLMV ASPQVIDGPA AANILDPVAN IKVEQQPIEE HFHTPGGFLP GSDRQIKVEL PFRSTARKCR MARKRRSLPY QVPFPCCTSR KSVEELIVEK NLEFLLQKQL KPSDVGNLGR IVLPKKEAES CLPYLTVREG MTIVMEDLTT AYKWHMRYRW KFLQSRARHR FWPNNKSRMY LLENTGEFIR SHCLKEGDLL RLYKYKNSAA GKYVILGKKA ASPEDSSTSS DTNNHSNKRV AVKSSTRKRS KGCGGGKSNK VASRGGGLAE IAAENCTPSS SSRAGSSSGS FGSSEREGHG LANFDSFEAS DIQEILTSLS // ID D8R9Q1_SELML Unreviewed; 872 AA. AC D8R9Q1; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Putative uncharacterized protein HSI2-1 {ECO:0000313|EMBL:EFJ30938.1}; GN Name=HSI2-1 {ECO:0000313|EMBL:EFJ30938.1}; GN ORFNames=SELMODRAFT_451626 {ECO:0000313|EMBL:EFJ30938.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ30938.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377574; EFJ30938.1; -; Genomic_DNA. DR RefSeq; XP_002967591.1; XM_002967545.1. DR UniGene; Smo.15961; -. DR STRING; 88036.EFJ30938; -. DR EnsemblPlants; EFJ30938; EFJ30938; SELMODRAFT_451626. DR GeneID; 9632817; -. DR Gramene; EFJ30938; EFJ30938; SELMODRAFT_451626. DR KEGG; smo:SELMODRAFT_451626; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; D8R9Q1; -. DR OMA; KMGSKMC; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 303 404 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 506 556 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 303 404 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 872 AA; 95056 MW; E2166C44C0A032A7 CRC64; MEPTRHKACM NVRCEAIESA AWKRGWRLRS GDRADLCTDC GSAFELSRFC EKFHAYDPGW RSCIACGKGL HCGCIASIHL FVLLDTGGVS CRGCVDLRES RNVVRSFFFL FSDFPFDLGK EQEENLILKP KSEVDFEQKM AATGSEDEKV RGVAEELSAK REVTYMEEME KLAVTRESPG TQTEVASLNT SLGLGMGIKV DDTAAGNLFQ TESPASGGEA KENPSKYSPI PYRPRHRQVG KQPVPPRVPL SGAAPEPTND PRVARPPADS KGRNQLLPRY WPRITDQEIQ QFTSGDSKIT PLFEKVLSAS DAGRIGRLVL PKACAEAYFP TISQAEGLPL RINDISGREW QFQFRFWPNN NSRMYVLEGV TPCIQAMHLQ AGDTVTFSRL EPEGKLIMGY RKAQDSGDSE YPGAKQTDYK SKAKETQSTL SADKRRGRPL GAKSKRLRLD SEDSLELKTS WEEAQELLRP PPGVTPSFVT IDGHQFEEYE EPPVLTKKTV TRTKPSGEQD RWVQCDDCAK FRRVPLDIFI HTRWTCTDNV WDLKRANCSA AKELSNEDMD QLMDSMSGKA QQRISPSGLD ALATAAAFGD EKAASPPPPA ATTKHPRHRP GCTCIVCIQP PSGKGPKHKP TCVCNVCLTV KRRFKTLMMR RKKRQSEREA ETARKKKAWD KDDGVAAAAS PAEAKWLKGN NNNNNVTTTP ERGQQRYNTR EASAPPKASP ALPAESPSPS PSPINPINPF VTERGKTFPF PELLGAFASP PVPGGGVGGG GGGATAVADE NLAGKGGIDL NSQPERDEAA QQSRLSMMRL LQDASLPLDM YLKQQGMANL APGFGGGGNG GGSGGGGGGE QVSDAKQQIQ QAAAEPSSVQ DG // ID D8RDP6_SELML Unreviewed; 779 AA. AC D8RDP6; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF10A-2 {ECO:0000313|EMBL:EFJ29537.1}; GN ORFNames=SELMODRAFT_451564 {ECO:0000313|EMBL:EFJ29537.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ29537.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377577; EFJ29537.1; -; Genomic_DNA. DR RefSeq; XP_002969449.1; XM_002969403.1. DR UniGene; Smo.3388; -. DR STRING; 88036.EFJ29537; -. DR EnsemblPlants; EFJ29537; EFJ29537; SELMODRAFT_451564. DR GeneID; 9660088; -. DR Gramene; EFJ29537; EFJ29537; SELMODRAFT_451564. DR KEGG; smo:SELMODRAFT_451564; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; D8RDP6; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 688 768 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 779 AA; 84569 MW; E0505A1F918DA43A CRC64; MASSDPSNSA NKAHSDHPKK GLDSQLWHAC AGGMVQLPPV GAKVIYFPQG HGEQAAAIPD FPRSGGTILC RVISVDFLAD AETDEVYAKM KLQPEVAPAP LFGTRMGDDE ELVSSPTVVE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSIDP PVQTVLAKDV HGEIWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLVAGDAIV FLRSASGELC VGVRRSMRGP GNGDSGISWH SSPGQSGYSE LLSGNGSGTS GASFARNRAR VTSKSVLEAA SLAAAGQAFE VVYYPRASTA EFCVRASVVK ASLEHSWYPG MRFKMAFETE DSSRISWFMG TISAVQPADP IRWPSSPWRI LQVSWDEPDL LQGVNRVSPW QVELVSTLPM QLPPFSLPRK KIRPLDLQFG ESQGGFMGLP MAALANNVLG QMNPWQSLSE EVPAGMQGAR QERFYGLTLS EFQPKQRVAG LFLDGAYPLD HSMTSRGATT DLRLNNFATT TTTPHDYFQL QQANIINATN TGRSAYGTPA AATQSESTAP PSVAPKSGTK RTATFLLFGK SIDPNYNPEE QQLQQQQNSG VSGGCSSEGT SHQYKESTSQ AQPSSNSSFE DGQADNNIIN NNLGNKNASS GNVTNNTTDM THKLFTNVTS TSLRLCQGES PDSGVTNESG SSKWMKEHSG ADPDDDGVIH CKIFFEKEEV GRTLDLSLFG NYEELYDRLA SMFTMDKSKL SGRVVYRDLE GSTIYIGGEP YGNFVKSVRR LTILAVPSSS TESRSAQSW // ID D8RL29_SELML Unreviewed; 539 AA. AC D8RL29; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ27333.1}; GN ORFNames=SELMODRAFT_412415 {ECO:0000313|EMBL:EFJ27333.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ27333.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377582; EFJ27333.1; -; Genomic_DNA. DR RefSeq; XP_002971584.1; XM_002971538.1. DR EnsemblPlants; EFJ27333; EFJ27333; SELMODRAFT_412415. DR GeneID; 9640393; -. DR Gramene; EFJ27333; EFJ27333; SELMODRAFT_412415. DR KEGG; smo:SELMODRAFT_412415; -. DR eggNOG; ENOG410IYW4; Eukaryota. DR eggNOG; ENOG411293H; LUCA. DR InParanoid; D8RL29; -. DR OrthoDB; EOG09360IHL; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006506; P:GPI anchor biosynthetic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013233; PIG-X/PBN1. DR Pfam; PF02362; B3; 2. DR Pfam; PF08320; PIG-X; 1. DR SMART; SM01019; B3; 2. DR SMART; SM00780; PIG-X; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT SIGNAL 1 22 {ECO:0000256|SAM:SignalP}. FT CHAIN 23 539 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5003121896. FT DOMAIN 225 316 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 449 539 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 225 316 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 449 539 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 539 AA; 60236 MW; 5B917404688A7687 CRC64; MKPPRAILLV AVLGAIAHLI RGNEVVKFAR TLEGSGSHRE LKTDISLQLD NKFQGDSCRL SLVENLPSSV FADTFQLQRL TRMGRYEAAH VSGDLDLERP AFFSGPVTVR IQVSLDQNAN VFHAETSLPL HARYAPLGID SYHLVNLSSP SVAVSCKKNA EELQLELAAS EEVQWPIPAG NPNDASTVNR FTALAAAAGT LVLCSISVMK KRVVILEMAD EREKVWFVRV IHKPVRFSHL SVPRRLAKDQ LKKLCNTTVF LQDERGQEWP IATNEHAYFC SGWNRLARDK SLKGGEVILF MHEGRGRLRF KIFAADGADR QDFGTERFCG RPPRIGGRKI VRKPRIVKKP APKLAVPVCV QAVVKEEVEE SGMLGDAEAA VVAMAEEQSP DDHEPAVAMA VEPSPELPHQ RESSPPFLER NLRSRPPLVR SKLHLHRLAM DAALAYKSDK PTFIVKIQGD ETVLSVRREF AERYLPRKPA TTSVVDGEST LWTVKWLGIR ACVLGAGWPE FAKHHVLKKL DICLFELITQ RAFQVRIYR // ID D8RLB4_SELML Unreviewed; 703 AA. AC D8RLB4; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ27102.1}; GN ORFNames=SELMODRAFT_412738 {ECO:0000313|EMBL:EFJ27102.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ27102.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377583; EFJ27102.1; -; Genomic_DNA. DR RefSeq; XP_002972185.1; XM_002972139.1. DR EnsemblPlants; EFJ27102; EFJ27102; SELMODRAFT_412738. DR GeneID; 9640612; -. DR Gramene; EFJ27102; EFJ27102; SELMODRAFT_412738. DR KEGG; smo:SELMODRAFT_412738; -. DR OrthoDB; EOG09361GLF; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004672; F:protein kinase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011009; Kinase-like_dom. DR InterPro; IPR000719; Prot_kinase_dom. DR InterPro; IPR008266; Tyr_kinase_AS. DR Pfam; PF02362; B3; 1. DR Pfam; PF00069; Pkinase; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF56112; SSF56112; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS00109; PROTEIN_KINASE_TYR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 372 467 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 372 467 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 79646 MW; 86EDCDDCEAD944AC CRC64; MYGEEREDVE FEWQFLVCYA VLGPHLQFFT VQINPQEQPF LTPLTLVLNL YQAPWNVCCH RSRTDIERDM SSLMLTHDGV LKVIWNWNDS CNEWGVNCED VFQAYTLAPK CGKHLVGSVE GPKFRTRSEC EQLLNPVSWT ADRDSSAKKR RTIRSDAPGA YMVMTVPLLA VREPVSEDEL RQMVLGIRKA LKALHGAGLV HRDIRPANVL YDYERRKLIW KACAQQGWKM LGRAMGEFPH DEAFQALVGK SYNTAEGVLN DEWLRVIGSA HPSKSPRLPL KWSKDHETES DGYWKDTSIF VRECWPSDGA NPTAQDHSSL GRSYEEDSPL SSYIPSNQQR QRRNREELPG SHEALQAAQE YQQHLAKKSR STIKVLNQCC VSGTYVMTLP SNYCKKMMPH GRAEVIVRDR SGHQWRMRWN WTVQPVIGAG WKAFCVHHEL VKGDVLVFQK ENSSEMITFR VEIFKRRKLV KSSDRANAAN IVLLPPKKEP DALEIEIEEL GGVANGGDVH DYDVLERNPK RTRGLLRGEW VENSHSCNQE GQRHVGPVVH DHCAIGELAA LEDLNVESYR LGGDVLLLED EHVPLDEFVM DAECFPSGTN HWLHRPVPFH HPLVATLVAD EDRGSPPRHH LLAVVRRKSL RKKKNEESGE DICYDCSLGA VAGTPARLGV LPANRAAARD SDAAAADWRG CNSAEDCLPR KNL // ID D8RLM1_SELML Unreviewed; 381 AA. AC D8RLM1; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ26748.1}; GN ORFNames=SELMODRAFT_412483 {ECO:0000313|EMBL:EFJ26748.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ26748.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377583; EFJ26748.1; -; Genomic_DNA. DR RefSeq; XP_002971831.1; XM_002971785.1. DR EnsemblPlants; EFJ26748; EFJ26748; SELMODRAFT_412483. DR GeneID; 9640419; -. DR Gramene; EFJ26748; EFJ26748; SELMODRAFT_412483. DR KEGG; smo:SELMODRAFT_412483; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 156 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 156 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 42753 MW; BE4C81892ECB0CF9 CRC64; MKSKDFSGLL VLADAAALQP SFSKTFILRR KRSPRKSMLW RALLWFTADM STSEPDSNGK RRVINQEAGQ LHEKKRRKVV VMDECQQLGQ KVKKLKMGDR DCGSRTDEVK DSSSSGEDGA IQPAGDTKKT KCHKWRPRKR EDPLVTCDPS RWALLFGKKL TASDVNSLHR LLIPVKYESM LPNQKVLVEF VDEEGGVWEL RCKKGKTGSL ITTHWIHYVR EHSLKEGDTV CFYKKVSSAD PKFGISFART SGKAKDGHGV VIRGDQIPVY LLRGSTVLMH TQALVGLSCM IKLATEIRDE ACQLCDCDVV RSHSIARTYE RVKANVRYHI CSNEKVCVVF VRIKLQRTTI NFVVVGTKVV VAVVVALEAA GMERRAMESA G // ID D8RN53_SELML Unreviewed; 299 AA. AC D8RN53; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ26658.1}; GN ORFNames=SELMODRAFT_413039 {ECO:0000313|EMBL:EFJ26658.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ26658.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377584; EFJ26658.1; -; Genomic_DNA. DR RefSeq; XP_002972572.1; XM_002972526.1. DR EnsemblPlants; EFJ26658; EFJ26658; SELMODRAFT_413039. DR GeneID; 9650867; -. DR Gramene; EFJ26658; EFJ26658; SELMODRAFT_413039. DR KEGG; smo:SELMODRAFT_413039; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 211 299 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 211 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 33514 MW; 03B96D0D34396D15 CRC64; MPLQAAAAAA AGVLRGLKLL GGADDHTICA GRRGGPASHQ LARKTQCAPH RDIYGEMTSK DFSGLLVLAD AAALQPSFSK FVLRRKRSPR KSMLWRALLW FTADMSTSEP DSNSKRRVIN QEAGQLHEKK RRKVVVMDEC QQLGQKVKKL KMGDRDYGSR TDEVKDSSSS GEDGAIQPAG DTKKTKCHKW RPRKREDPLV TCDPSRWALL FDKKLTASDV NSLHRLLIPV KYESILPNDQ KVLVEFVDEE GGVWELRCKK GKTGSLITTH WIHYVREHSL KEGDTVCFYK KVSSADPKF // ID D8RNT6_SELML Unreviewed; 434 AA. AC D8RNT6; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ25922.1}; GN ORFNames=SELMODRAFT_413242 {ECO:0000313|EMBL:EFJ25922.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ25922.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377585; EFJ25922.1; -; Genomic_DNA. DR RefSeq; XP_002972701.1; XM_002972655.1. DR EnsemblPlants; EFJ25922; EFJ25922; SELMODRAFT_413242. DR GeneID; 9636504; -. DR Gramene; EFJ25922; EFJ25922; SELMODRAFT_413242. DR KEGG; smo:SELMODRAFT_413242; -. DR eggNOG; ENOG410JDKA; Eukaryota. DR eggNOG; ENOG410YRTR; LUCA. DR InParanoid; D8RNT6; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 434 AA; 45872 MW; 549434AF16A51A7E CRC64; MSFAKTVTSS DMAAMAIPGP VYERHRNEAF GGTVALAHGG RDWQVDASSG SFTTGWKEFW LGNALNEGDC LVFRHQSAGR FALEIFGSDG SAKEGGVGAP AYKSASSSSA LKRSRDDLPA AMEVVVKDCL VHLEDGSSLK FVVTKIPPED PAGEPFTPLV SAAKASDALP RSSRMTRSSQ KSVPAAKAPS PDAKDDSPAP KKAKIDSPKR TRKTRKQEEV SKMESSSEKN KEPTAKSSGK KKKKNQDVPC DSPALLRAEA FKATIPSTNP STAIVMKKSC LHPCYYLTIP KDFAEKLPHE NKMLTVESNA VKEPWDVKWL AANRAFSGGW NKVAQFYNLE LDDACVLEVL NKSGVRISVF KADGSSSVAA NQSAPAIANG EIGGEVAEAG FATVDEGDAI AAMEKLCGDG GVKAKDGGGE NGDGGDNENA GQVI // ID D8RQC8_SELML Unreviewed; 585 AA. AC D8RQC8; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein ABI3A-1 {ECO:0000313|EMBL:EFJ25834.1}; GN Name=ABI3A-1 {ECO:0000313|EMBL:EFJ25834.1}; GN ORFNames=SELMODRAFT_173356 {ECO:0000313|EMBL:EFJ25834.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ25834.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377586; EFJ25834.1; -; Genomic_DNA. DR RefSeq; XP_002973460.1; XM_002973414.1. DR UniGene; Smo.1527; -. DR STRING; 88036.EFJ25834; -. DR EnsemblPlants; EFJ25834; EFJ25834; SELMODRAFT_173356. DR GeneID; 9638260; -. DR Gramene; EFJ25834; EFJ25834; SELMODRAFT_173356. DR KEGG; smo:SELMODRAFT_173356; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; D8RQC8; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 362 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 362 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 585 AA; 63078 MW; 7788AB8760E054CD CRC64; MMMLPEVPLD GDSTSPEDSG MHTQDCCEQF EHKQHEDEMI FCRSSSSCSS TFPDSCANQE TLELSIPDDF FGDRQQQHDE ERQRQAEQQL LPPLTEARSG HQFAPDLRKI IVKKPVMDKA VERLGGGRRG AMRLWNIIQV WLKHQQQQGG GGSMDGFSLP FENFGGFMDV PVHNQQQQQQ QQQQHFQHPG FPVAGGFGGE AASTGGGGGG QFYGDPNVVP GQHFSSAYPD ATTTAADVAT PRSMATAPIA NSASAAATTR AARKSRMARQ RRHKGGFGGT SLSHSPVATS AGAWSSASTA GFLATTATAA TITTTTTSNS SLSLATTHGA LGAREQHQHQ FGTCRDGIKA RMSCDKSVKF LLQKELKPSD VGNLGRIVLP KKEAEIHLPY LSLREGIMLA MEDVLTAQTW HFRYRFWPNN KSRMYLLEGT GDYVKSHLLK EGDLIQIYRD AKTGKHIICA KKFAARPVTP AAETTTTTTS SKLEDDCLSG ASTVSDSSKD APPVEQQRPG SRACVKKRKV TKPTVSVGAP VAANSGGGGG VGGVGGGDEI ERFPSIEMED EFIDEILGMV DAEEPSSPES CKEDD // ID D8RQU1_SELML Unreviewed; 127 AA. AC D8RQU1; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ25705.1}; DE Flags: Fragment; GN ORFNames=SELMODRAFT_59628 {ECO:0000313|EMBL:EFJ25705.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ25705.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377586; EFJ25705.1; -; Genomic_DNA. DR RefSeq; XP_002973331.1; XM_002973285.1. DR EnsemblPlants; EFJ25705; EFJ25705; SELMODRAFT_59628. DR GeneID; 9637890; -. DR Gramene; EFJ25705; EFJ25705; SELMODRAFT_59628. DR KEGG; smo:SELMODRAFT_59628; -. DR InParanoid; D8RQU1; -. DR OMA; HELYINC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 13 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EFJ25705.1}. FT NON_TER 127 127 {ECO:0000313|EMBL:EFJ25705.1}. SQ SEQUENCE 127 AA; 14608 MW; 4E53EC0D26216E5C CRC64; ATGGGAAAHE HLFYKVVTPS DVGKLNRLVI PKQHAERWFP LDPCLRKKGR LLSFQDVVSR ELWWFRYSYW SSSQSYVLTK GWIRFVKDKD LQAGDIISFE RGARHELYIN CRKRPTSGRA AFAPLPG // ID D8RQU3_SELML Unreviewed; 116 AA. AC D8RQU3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ25515.1}; DE Flags: Fragment; GN ORFNames=SELMODRAFT_59621 {ECO:0000313|EMBL:EFJ25515.1}, GN SELMODRAFT_59622 {ECO:0000313|EMBL:EFJ22224.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ25515.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377596; EFJ22224.1; -; Genomic_DNA. DR EMBL; GL377586; EFJ25515.1; -; Genomic_DNA. DR RefSeq; XP_002973141.1; XM_002973095.1. DR RefSeq; XP_002976555.1; XM_002976509.1. DR EnsemblPlants; EFJ22224; EFJ22224; SELMODRAFT_59622. DR EnsemblPlants; EFJ25515; EFJ25515; SELMODRAFT_59621. DR GeneID; 9637891; -. DR GeneID; 9649166; -. DR Gramene; EFJ22224; EFJ22224; SELMODRAFT_59622. DR Gramene; EFJ25515; EFJ25515; SELMODRAFT_59621. DR KEGG; smo:SELMODRAFT_59621; -. DR KEGG; smo:SELMODRAFT_59622; -. DR OMA; GSSRHEN; -. DR OrthoDB; \N; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 4 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EFJ25515.1}. FT NON_TER 116 116 {ECO:0000313|EMBL:EFJ25515.1}. SQ SEQUENCE 116 AA; 13783 MW; 1AB4B5D7CE20C5D3 CRC64; EHLFYKVVTP SDVGKLNRLV IPKQHAERCF PLDPSLRKKG RFLSFQESFT GKVWWFRYSY WNSSQSYVFT KGWIRFVKEN KLKAGDIVSF ERGSSRHENF YISCRKRPRT PSDDPG // ID D8RZW2_SELML Unreviewed; 92 AA. AC D8RZW2; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ22368.1}; DE Flags: Fragment; GN ORFNames=SELMODRAFT_59317 {ECO:0000313|EMBL:EFJ22368.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ22368.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377596; EFJ22368.1; -; Genomic_DNA. DR RefSeq; XP_002976699.1; XM_002976653.1. DR EnsemblPlants; EFJ22368; EFJ22368; SELMODRAFT_59317. DR GeneID; 9649165; -. DR Gramene; EFJ22368; EFJ22368; SELMODRAFT_59317. DR KEGG; smo:SELMODRAFT_59317; -. DR InParanoid; D8RZW2; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 4 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EFJ22368.1}. FT NON_TER 92 92 {ECO:0000313|EMBL:EFJ22368.1}. SQ SEQUENCE 92 AA; 11093 MW; 707A15E4231F711D CRC64; EHLFYKVVTP SDVGKLNRLV IPKQHAERWF PLDPCLRKKG RLLSFQDVVS RELWWFRYSY WSSSQSYVLT KGWIRFVKDK DLQAGDIISF ER // ID D8S0C8_SELML Unreviewed; 752 AA. AC D8S0C8; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF10B-1 {ECO:0000313|EMBL:EFJ22031.1}; GN ORFNames=SELMODRAFT_443304 {ECO:0000313|EMBL:EFJ22031.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ22031.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377597; EFJ22031.1; -; Genomic_DNA. DR RefSeq; XP_002976921.1; XM_002976875.1. DR STRING; 88036.EFJ22031; -. DR EnsemblPlants; EFJ22031; EFJ22031; SELMODRAFT_443304. DR GeneID; 9649789; -. DR Gramene; EFJ22031; EFJ22031; SELMODRAFT_443304. DR KEGG; smo:SELMODRAFT_443304; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; D8S0C8; -. DR OMA; IIAKDMH; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 670 748 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 752 AA; 80876 MW; 623007BBAB686129 CRC64; MPGQSPGPMS SRDASDLGKG RGTRDREEIR GGGEEKHLDQ QLWQACAGSM VQLPTVGSKI IYFPQGHAEQ AASSPDFPRA LGPAGTVPCR VLSVKFLADK ETDEVFASLR LHPESGSDED NDRAAALSPS PEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSV DPPVQTVLAK DVHGEVWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDA IVFLRSNSGE LCVGVRRSMR GGGSGNADAL LWHSASSRSS SRWELRPPMD TGLSDGTLMG ENGSSRSAGG GGGNGGGSFT RNRAKVTAKS VLDAATLAAS GKAFEVVYYP RASTAEFCVR AQTVRAALSH GWYAGMRFKM AFETEDSSRI SWFMGTISAV QAADPILWPS SPWRVLQVAW DEPDLLQGVS RVSPWQVELV STLPMQLPPF SLPRKKFRQT PAPEGQSFSG LPTTTFANGV LGQANPWHGL SDDVPAGMQG ARHERLYGLT FSECQPTRIH SGLLENRYQA QDIPVAATLG YGATDLRLGN VFPQGGSGGG EQRTLVTTVL CNGSQNDSGV SCTESSCNKQ GTFLLFGKKI ETARVQEQQN SAGSSSEATS RHNVPSQQPS ASSSGDSHND AVQQNVLLQE NGESGHGGDV GGSKWLKKQA SVLSWEKKDR LEGSSSDEES SQCRVFMESG DVKRTLDLSS FGSYDELYKQ LATVFCVDMA KISGRVVYKD SEGSTIHTGG EPYANFVKSV RRLTILADTQ DS // ID D8S2Q3_SELML Unreviewed; 246 AA. AC D8S2Q3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ21499.1}; GN ORFNames=SELMODRAFT_417283 {ECO:0000313|EMBL:EFJ21499.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ21499.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377599; EFJ21499.1; -; Genomic_DNA. DR RefSeq; XP_002977495.1; XM_002977449.1. DR EnsemblPlants; EFJ21499; EFJ21499; SELMODRAFT_417283. DR GeneID; 9639091; -. DR Gramene; EFJ21499; EFJ21499; SELMODRAFT_417283. DR KEGG; smo:SELMODRAFT_417283; -. DR OrthoDB; EOG09361GLF; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 150 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 28251 MW; 817FFE94FB555C0D CRC64; MSSLMLTHDG VLKVIWNWND YCNEWGVNCE DVFQAYTLAP KCGKHLVGSV EGPKFRTRSE LGMENAGSLM HKHYPRLLTS QALQALIKGL LGKSYNTVEG SYEEDSPLSS YIPSNQQRQR RNREELPGSH EALQAAQEYQ QHLAKKSRST IKVLNQCCVS GTYVMTLPSN YCKKMMPHGR AEVIVRDRSG HQWRMRWNWT MQPVIGAGWK AFCVHHELVK GDVLVFQKEN SSSEMITFRV EIFKRQ // ID D8S2Q4_SELML Unreviewed; 358 AA. AC D8S2Q4; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ21500.1}; GN ORFNames=SELMODRAFT_417284 {ECO:0000313|EMBL:EFJ21500.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ21500.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377599; EFJ21500.1; -; Genomic_DNA. DR RefSeq; XP_002977496.1; XM_002977450.1. DR EnsemblPlants; EFJ21500; EFJ21500; SELMODRAFT_417284. DR GeneID; 9655722; -. DR Gramene; EFJ21500; EFJ21500; SELMODRAFT_417284. DR KEGG; smo:SELMODRAFT_417284; -. DR OrthoDB; EOG09361GLF; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 262 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 262 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 40583 MW; 03F96DC9B5561679 CRC64; MTGKIRSPLS ATEFLHIGIA NATVSEAPEL FAGCEVATYL TGKVPWLELP SEIGEYYRSS GAGNLDLLER CDLFSPDQKP GNHSTWHVLD AMNTSPIAHF KKYKLNALID RDMSSLMLTH DGVLKVIWNW NDYCNEWGVN CEDVFQAYTL APKCGKHLVG SVEGPKFRTR SELGMENAGS LMHKHYPRLL TSQALQALIK GLLGKSYNTV EGSYEEDSPL SSYIPSNQQR QRRNREELPG SHEALQAAQE YQQHLAKKSR STIKVLNQCC VSGTYVMTLP SNYCKKMMPH GRAEVIVRDR SGHQWRMRWN WTMQPVIGAG WKAFCVHHEL VKGDVLVFQK ENSSSEMITF RVEIFKRQ // ID D8S324_SELML Unreviewed; 166 AA. AC D8S324; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ21191.1}; GN ORFNames=SELMODRAFT_417628 {ECO:0000313|EMBL:EFJ21191.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ21191.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377600; EFJ21191.1; -; Genomic_DNA. DR RefSeq; XP_002977853.1; XM_002977807.1. DR EnsemblPlants; EFJ21191; EFJ21191; SELMODRAFT_417628. DR GeneID; 9656456; -. DR Gramene; EFJ21191; EFJ21191; SELMODRAFT_417628. DR KEGG; smo:SELMODRAFT_417628; -. DR InParanoid; D8S324; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 61 166 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 166 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 166 AA; 19412 MW; E70D2CA1B3C5DA5B CRC64; MVDQELREPK RRKVDGDEGV NLGKYSCHQM DSTSSSYTKW RPQKYDRPLN ITDKAHWFPL FGKRLTKGDV DTLDTLIFSV HEESKLPRLD DDEKIPMEFV DEKGAVWEFG YKKGKRGPSL VTNQWIQYVR ENSLQEGDIV CFYKKMLMNP LAPKFGITFF KIPKSN // ID D8S6Z7_SELML Unreviewed; 261 AA. AC D8S6Z7; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ20021.1}; DE Flags: Fragment; GN ORFNames=SELMODRAFT_110104 {ECO:0000313|EMBL:EFJ20021.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ20021.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00585200}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377604; EFJ20021.1; -; Genomic_DNA. DR RefSeq; XP_002979064.1; XM_002979018.1. DR EnsemblPlants; EFJ20021; EFJ20021; SELMODRAFT_110104. DR GeneID; 9659837; -. DR Gramene; EFJ20021; EFJ20021; SELMODRAFT_110104. DR KEGG; smo:SELMODRAFT_110104; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; D8S6Z7; -. DR KO; K09287; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585222}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585208}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}. FT DOMAIN 30 85 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 85 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 261 261 {ECO:0000313|EMBL:EFJ20021.1}. SQ SEQUENCE 261 AA; 29364 MW; C84C29BF1348355C CRC64; MNSTTKSGGG GGGGGAMVLS SESGKLPSSQ YKGVVPQPNG RWGAQIYEKH QRVWLGTFNK EEEAARAYDR AAIKFRGRDA MTNFRPVHDS DPEASFLRLH SKEQVVDMLR RHTYDEELDQ SRKITHARAM MIHHPASAAP PAKPSATAAS AVHREHLFDK AVTPSDVGKL NRLVIPKQHA ERCFPLDLSA NEKGLLLSFE DITGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKKLDAGDI VTFERGPGQE LYISWRRRPV P // ID D8S9H8_SELML Unreviewed; 295 AA. AC D8S9H8; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ18820.1}; GN ORFNames=SELMODRAFT_419614 {ECO:0000313|EMBL:EFJ18820.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ18820.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377608; EFJ18820.1; -; Genomic_DNA. DR RefSeq; XP_002979950.1; XM_002979904.1. DR EnsemblPlants; EFJ18820; EFJ18820; SELMODRAFT_419614. DR GeneID; 9649640; -. DR Gramene; EFJ18820; EFJ18820; SELMODRAFT_419614. DR KEGG; smo:SELMODRAFT_419614; -. DR eggNOG; ENOG410YRPE; LUCA. DR InParanoid; D8S9H8; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 34 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 32383 MW; B116B23ED930B327 CRC64; MATFCKAIKA KENLHTCVVP EGFLDGDGVV PANLTLANSS GSSWSVAIRE DSGDFLLDKG WRSFCLDNEL SLDDVVLMKR IQPSNVLVTI YGGDGCERKK SQSCDIAKAN NPFGSEVNSG NNCKQETRDR ITADDYHEII DNGNILKRSM DHPEVPLKKR AKTTVGSEKS TAKKLIKVTL SCSSRTVSSE SAIAAASKFE CSNPSVLLAT TKSTLDPTYY LIVHKQFSEA FMPKVDTAVM LVNSRDERFP ARWLAARHVV SGGWRGFARA EKIKVGDALV LEVVDESTFK IHVFE // ID D8SB15_SELML Unreviewed; 793 AA. AC D8SB15; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF10B-2 {ECO:0000313|EMBL:EFJ18315.1}; GN ORFNames=SELMODRAFT_444549 {ECO:0000313|EMBL:EFJ18315.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ18315.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377610; EFJ18315.1; -; Genomic_DNA. DR RefSeq; XP_002980664.1; XM_002980618.1. DR UniGene; Smo.1467; -. DR STRING; 88036.EFJ18315; -. DR EnsemblPlants; EFJ18315; EFJ18315; SELMODRAFT_444549. DR GeneID; 9648219; -. DR Gramene; EFJ18315; EFJ18315; SELMODRAFT_444549. DR KEGG; smo:SELMODRAFT_444549; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; D8SB15; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 85546 MW; F91EE218F9029E10 CRC64; MPGQSPGPMS SRDASDLGKG RGTRDREEIR EGGEEKHLDQ QLWQACAGSM VQLPTVGSKI IYFPQGHAEQ AASSPDFPRA LGPAGTVPCR VLSVKFLADK ETDEVFASLR LHPESGSDED NDRAAAPSPS PEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSV DPPVQTVLAK DVHGEVWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDA IVFLRSNSGE LCVGVRRSMR GGGSGNADAL LWHSASSRSS SRWELRPPMD TGLSDGTLMR ENGSSRSAGG GAGNGGGSFT RNRAKVTAKS VLDAATLAAS GKAFEVVYYP RASTAEFCVR AQTVRAALSH GWYAGMRFKM AFETEDSSRI SWFMGTISAV QAADPILWPS SPWRVLQVAW DEPDLLQGVS RVSPWQVELV STLPMQLPPF SLPRKRFRQT PAPEGQSFSG LPTTTFANGV LGQANPWHGL SDDVPAGMQG ARHERLYGLT FSECQPNRIH SGLLENRYQA QDIPVAATLG YGATDLRLGN VFPQGGSGGG EQRTLVTTVL CNGSQNDSGV SCTESSCNKQ GTFLLFGKKI ETARVQEQQN SAGSSSEATS RHNVPSQQPS ASSSGDSHND AVQQNVLLHE NGDSGHGGDV GGSKWLKKQA SVLSSEKKDR LEGSSSDEES SQCRVFMESG DVKRTLDLSS FGSYDELYKQ LAAVFCVDVA KISGRVVYKD SEGSTIHTGG EPYAMRGGKS GHRLYSLHRE SVNVEGGDDL FCGGGKWMKK GTGKRQKQWR LKTKEEVGQL LET // ID D8SC60_SELML Unreviewed; 442 AA. AC D8SC60; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein ABI3B-1 {ECO:0000313|EMBL:EFJ18136.1}; GN Name=ABI3B-1 {ECO:0000313|EMBL:EFJ18136.1}; GN ORFNames=SELMODRAFT_451614 {ECO:0000313|EMBL:EFJ18136.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ18136.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377611; EFJ18136.1; -; Genomic_DNA. DR RefSeq; XP_002980951.1; XM_002980905.1. DR STRING; 88036.EFJ18136; -. DR EnsemblPlants; EFJ18136; EFJ18136; SELMODRAFT_451614. DR GeneID; 9657611; -. DR Gramene; EFJ18136; EFJ18136; SELMODRAFT_451614. DR KEGG; smo:SELMODRAFT_451614; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; D8SC60; -. DR OrthoDB; EOG09360NNM; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 235 337 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 235 337 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 442 AA; 48914 MW; CE630544D4197D6C CRC64; MAADSNPSSL SSDYQNGSTS FQLTDDHERD QNVPWILDQA DHPALMIDEA EHEPWGSAGE DDRLGNLDME QQLRINHSFM QMQSIFGAED DPTKMPLLGN CWSTEDPSPW NHSAAFSEDH HQQGNGFYSH DHSNVFVSLP PPQQQLQIIE SSPLTGGGQI MAVASSSPCA STRAARKNCM ARKRRPMLGT SKPGPTSVSA AAAPAPAVAA VSDVETTLPD DHTQGLQNKN LKFLLQKQLK PSDVGNLGRI VLPKKEAESR LPYLSAREGM TLAMEDMTSK RTWNLRYRFW PNNKSRMYLL ENTGEFIRSH KLCEGDYLLL YKDSRNGKYV IYGKKDVSGS NEKRQAPKQQ EGCMVKRSRS FDCERRKPAA PTLTSSSSSS SILTTAGVID TGLSFTDIKQ GLDKDQESFG SSNVVFDIDQ FPLLEVNDLA IDEILDLVDL PS // ID D8SE76_SELML Unreviewed; 855 AA. AC D8SE76; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Putative uncharacterized protein HSI2-2 {ECO:0000313|EMBL:EFJ17236.1}; GN Name=HSI2-2 {ECO:0000313|EMBL:EFJ17236.1}; GN ORFNames=SELMODRAFT_451631 {ECO:0000313|EMBL:EFJ17236.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ17236.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377615; EFJ17236.1; -; Genomic_DNA. DR RefSeq; XP_002981754.1; XM_002981708.1. DR UniGene; Smo.231; -. DR STRING; 88036.EFJ17236; -. DR EnsemblPlants; EFJ17236; EFJ17236; SELMODRAFT_451631. DR GeneID; 9648177; -. DR Gramene; EFJ17236; EFJ17236; SELMODRAFT_451631. DR KEGG; smo:SELMODRAFT_451631; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; D8SE76; -. DR OMA; CCAPEES; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 302 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 505 555 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 302 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 855 AA; 92756 MW; 7FAC36C3A8869A96 CRC64; MEPTRHKACM NVRCEAIESA AWKRGWRLRS GDRADLCTDC GSAFELSRFC EKFHAYDPGW RSCIACGKGL HCGCIASIHL FVLLDTGGVS CRGCVDLRES RNVQGILGGF SYDSDLGKEQ EENLILKPKS EVDFEQKMAG TGSEDEKVRG VAEGLSAKRE VDTYMEEMEK LAVTRESPGT QTEVASLNTS LGLGMGIKVD DTAAGNLFQT ESPASGGETK ENPSKYSPIP YRPRHRQVGK QPVPPRVPLS GAAPEPTNDP RVARPPADSK GRNQLLPRYW PRITDQEIQQ FTSGDSKITP LFEKVLSASD AGRIGRLVLP KACAEAYFPT ISQAEGLPLR INDINGREWQ FQFRFWPNNN SRMYVLEGVT PCIQAMHLQA GDTVTFSRLE PEGKLIMGYR KAQDSGDGEY PGAKQTDYKS KAKETQSTLS ADKRRGRPLG AKSKRLRLDS EDSLELKTSW EEAQELLRPP PGVTPSFVTI DGHQFEEYEE PPVLTKKTVT RTKPSGEQDR WVQCDDCAKF RRVPLDIFIH TRWTCTDNVW DLKRANCSAA KELSNEDMDQ LMDSMSGKPG KAASSPSGLD ALATAAAFGD EKAASPPPPA ATTKHPRHRP GCTCIVCIQP PSGKGPKHKP TCVCNVCLTV KRRFKTLMMR RKKRQSEREA ETARKKKAWD KDDGVAAAAS PAEAKWLKGN NNNNNVTTTP ERGQQRYNTR EASAPPKASP ALPAESPSPS PSPINPINPF VTERVPGGGV GGGGGGATAV ADENLAGKGG IDLNSQPERD EAAQQSRLSM MRLLQDASLP LDMYLKQQGM ANLAPGFGGG GNGGGSGGGG GGEQVSDAKQ QIQQAAAEPS SVQDG // ID D8SGB6_SELML Unreviewed; 533 AA. AC D8SGB6; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Putative uncharacterized protein ABI3C-2 {ECO:0000313|EMBL:EFJ16661.1}; GN Name=ABI3C-2 {ECO:0000313|EMBL:EFJ16661.1}; GN ORFNames=SELMODRAFT_451623 {ECO:0000313|EMBL:EFJ16661.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ16661.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377618; EFJ16661.1; -; Genomic_DNA. DR RefSeq; XP_002982416.1; XM_002982370.1. DR EnsemblPlants; EFJ16661; EFJ16661; SELMODRAFT_451623. DR GeneID; 9660910; -. DR Gramene; EFJ16661; EFJ16661; SELMODRAFT_451623. DR KEGG; smo:SELMODRAFT_451623; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 319 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 319 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 533 AA; 58432 MW; B0293EF1C5947005 CRC64; MAVSCAVYNL PSDFPLLDVK IESVSISGRE VLDCCDDFSF QDFSPIAQHS GAAASEASVA FDHPQKDPAS IIPLEAPAPG FQLVDNYGGA AAATLSVDGP QDCKPLVDLW EVPDAKKESM ASIPAGSSAR LVEWIGEVPA AATMMDWQQH QAQQHHSIVI GDEESATASI EDQYWFSCPQ LECQVLQSQQ QQQQQQGDAI GSSANLYAFR RHCPAAILDN LMVASPQVID GPAAANILDP VANIKVEQQP IEEHFHTPGG FLPGSDRQIK VELPFRSTAR KCRMARKRRS LPYQVPFPCC TSRKSVEELI VEKNLEFLLQ KQLKPSDVGN LGRIVLPKKE AESCLPYLTV REGMTIVMED LTTAYKWHMR YRWKFLQSRA RHRFWPNNKS RMYLLENTGE FIRSHCLKEG DLLRLYKYKN SAAGKYVILG KKAASPEDSS TSSDTNNHNN KRAAVKSSTR KRSKGCGGGK SNKVASRGGG LAEIAAENCT PSSSSRAGSS SSSFGSSERE GHGLANFDSF EASDIQEILT SLS // ID D8SHF1_SELML Unreviewed; 824 AA. AC D8SHF1; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=NPH4A-1 {ECO:0000313|EMBL:EFJ16099.1}; GN ORFNames=SELMODRAFT_179736 {ECO:0000313|EMBL:EFJ16099.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ16099.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377620; EFJ16099.1; -; Genomic_DNA. DR RefSeq; XP_002982854.1; XM_002982808.1. DR UniGene; Smo.979; -. DR STRING; 88036.EFJ16099; -. DR EnsemblPlants; EFJ16099; EFJ16099; SELMODRAFT_179736. DR GeneID; 9661912; -. DR Gramene; EFJ16099; EFJ16099; SELMODRAFT_179736. DR KEGG; smo:SELMODRAFT_179736; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; D8SHF1; -. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 706 790 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 824 AA; 92449 MW; F1D570CC7BF42CE3 CRC64; MLAELGVYQS SKPQCFTPGV KRGPNPELWH ACAGPLVSLP SVGTRVVYFP QGHSEQVAAS TQKEADADIP SYPNLPPHLV CQLHNITLHA DTETDEVYAQ MTLQPMNAQE KDSFMVSDLG RQNRQPSEYF CKTLTASDTS THGGFSIPRR AAEKVFPPLD FSQQPPAQEI VARDLHDTEW RFRHIYRGQP RRHLLTTGWS VFVSAKRLQT GDAVLFIRDE KGQLLLGIRR ANRQQASMPL SLLSTDSMYI GILAAAAHAN STSSRFTIFY NPRASPSEFV IPLSKYYNAV YNNMQVSPGM RFRMQFETEE SGIRRHTGTI VGSGDLDPVR WPNSHWRSLK VEWDEPAAGE KQQRISLWEI EPASTPYLVC SPSFTFRSKR PWSQAPVILE AFNSCLFSHS GEVEAVDAGK WIKSEGLEKN LSWNMYSEQL MQLHQRPDSA ASGARSDFFR PDDCSRVQDA THSQTPKGLP MQQIHMKGQQ QQHTQLLSAL PQQQQAHEYN CHQHQQQQQQ QQQVVQLSQQ SSESALHLSS GPQSLKQRGD SSDIALSSYG RSYQSSMLEQ QYARNIGGEQ EAIQIKDTHG WYVGEKDFPT EQPLQFGHLD GYSGSGAVFS INDIEQGVTA GLTFKDAQQQ QEQDTLPLDS RSHLLFGVSI EPECITPSSQ GPKSKDGQQR VLSSTASDLH LSSDNGTLEE PAYLQRSSSA QHMLPRTFTK VYKTGSVGRS LDLTRLNCYD GLRSELARMF GLEGQLEDPH RSGWQLVFVD NENDVLLVGD DPWEEFVSCV RCIKIMSPAE LSHMNQEQLN AIQARTNEEF TEQDANPGVE VEEF // ID D8SNV1_SELML Unreviewed; 835 AA. AC D8SNV1; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=NPH4B-1 {ECO:0000313|EMBL:EFJ13857.1}; GN ORFNames=SELMODRAFT_451395 {ECO:0000313|EMBL:EFJ13857.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ13857.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377630; EFJ13857.1; -; Genomic_DNA. DR RefSeq; XP_002984982.1; XM_002984936.1. DR STRING; 88036.EFJ13857; -. DR EnsemblPlants; EFJ13857; EFJ13857; SELMODRAFT_451395. DR GeneID; 9648907; -. DR Gramene; EFJ13857; EFJ13857; SELMODRAFT_451395. DR KEGG; smo:SELMODRAFT_451395; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; D8SNV1; -. DR OMA; REYSAYQ; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 675 764 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 835 AA; 92593 MW; AD4C80A3D6065485 CRC64; MSHVSSLAGG DKKAINQALW LECAGPLITL PAIGSQVVYF PQGHSEQVIA STHKEADFEV PSYPNLPPQL FCILHNITLH ADQENDEVFA QMTLQPFSQT ALLKDPFLLP DFGIQTKQTI VSFSKTLTAS DTSTHGGFSI PRRAAEKVFP PLDFTKTPPA QELVARDLHN NEWHFRHIYR GQPRRHLLTT GWSVFVSAKR LQAGDTVLFL RDEQGQHMLG IRRANRQQTN LPTSLLSSDS MLIGVLAAAA HAASTNSRFT IFYNPRASPS EFVIPLAKYQ KALHPPQLTV GMRFRMEMET EDSSTRRYMG TITGIGDLDP VRWPNSHWRS LKVGWDESTA GQKQRRVSAW EIEPLTVPFL LCNSSFLLRS KRPRAFSGVL NTLSLSLAEE ELQMKAPSIW ARGEEGKFSM QNMNFPGLSG MDHWLQLQQK AGGSAAVTPP PPVIQPGYYS SILQEMRTID ATPKQLMQSP QAFQPMQFNQ SMPPLLQQQQ QQAQQMMHLP PNVPEAASMH APYIPAALKT PPDQEVNRNS NSYPPFIIED GVSYTSMLQG SAPASLPKQQ HHQQQAGMLT CSSLDHQTNW MPSLREGDAS IPVDASLLPP SASQQALDQD NDPRSHVLFG VNIDGQVPPS YAPPPFSKPK DFSGAQADIA LLHAAEENGV PQPSWPQQVY PPPVRTFTKV HKVGSVGRSL DITRFKNYHE LRNELTRMFG LEHDHKSGWQ LVFIDNENDM LLLGDDPWDE FIGCVKSIRI LSSSEILQMN QEHMEWLNSI PLHQQQKQAS SSSDDHRPCG DVPAITTATP TAATTTTATT TAQAGNVPRA MSSYNSDPSC VSDGI // ID D8SNW5_SELML Unreviewed; 958 AA. AC D8SNW5; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=NPH4C-1 {ECO:0000313|EMBL:EFJ13865.1}; GN ORFNames=SELMODRAFT_181404 {ECO:0000313|EMBL:EFJ13865.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ13865.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377630; EFJ13865.1; -; Genomic_DNA. DR RefSeq; XP_002984990.1; XM_002984944.1. DR UniGene; Smo.15029; -. DR STRING; 88036.EFJ13865; -. DR EnsemblPlants; EFJ13865; EFJ13865; SELMODRAFT_181404. DR GeneID; 9648915; -. DR Gramene; EFJ13865; EFJ13865; SELMODRAFT_181404. DR KEGG; smo:SELMODRAFT_181404; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; D8SNW5; -. DR OMA; PSSCIDK; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 822 909 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 515 550 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 958 AA; 107259 MW; 4A69066A91BA9D1D CRC64; MNCLLAGEKK AMNTALWLEC AGPLVTLPTV GSHVVYFPQG HSEQVVASTT QKDGVEAEIP NYPSLPAHLI CHLHNITLHA DPDTDEVYAQ MTLQPVQNDK EPFLTPDLGI QPKQQTLSFC KTLTASDTST HGGFSIPRRA AEKVFPPLDF TKQPPAQELV AKDLHNQQWT FRHIYRGQPR RHLLTTGWSV FVSAKRLQAG DTVLFIRDEN NHLLLGIRRA NRQQANVPSS LLSSDSMLIG VLAAAAHAAT TNSRFTIFYN PRASFSEFVV PFCRFSKATY HPRVTVGMRF RMELETEDSS TRRYMGTITG IGDLDSVRWP NSLWRTLKVG WDESTAGQRQ RRVSLWEIEP LTAPYFPCTS SLFLRKRTRL DGMLSFCAGE LDELDAIRSQ VWARAEDGKM DIRALNAAGL SLEHWLRFQH KPEAAIATAS QPDYYRAMAA QALQEFRSVD SAKQQHQQQQ QQQQQQQFQV LQSHPPQQPI FQPQQLQQQQ QQLHHQQQQQ QSSHHQQQQQ HHHHHQQHRQ QQQQQQQQQQ QQQQQQLQLQ QQQQQQQQQQ SYQLQVPASL QQTVPLASRL TPGFSEDSGA SFGSMPANNM SLQSLLNRSN PDALLQESQY SSQPVAAALK QNQLPLQQQQ QQQIPAPGLL SQEPQLSGSW MSSIRDSTGP ASAVLSPRTL DSSGNPYMVQ PSPSGGAAAA AHLSHLPPPA AAAAAAAPTP PYSVYRDVSS SHQEQDVQSD LRSNSHLLFG VNIDSPLMLS SAAAAVAQGF APADKAKDVS FSMIGSPSGS DMHMSGGTAV ALDDSPTSWQ QQQHQQQQQQ QQQQQVQPSP MRTFTKVVYK TGSVGRSIDV TRLKNYEELR RDIARMFNLE GQLLMDSCRS SWQLVFVDYE GDVLLVGDDP WEEFVGCVRF IKILSPSEVQ QLNRENLESI AAVPNQRQTS SSSDDCANPT NNFAQDPRLS YHHRPDFC // ID D8SQV9_SELML Unreviewed; 192 AA. AC D8SQV9; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ13235.1}; GN ORFNames=SELMODRAFT_424732 {ECO:0000313|EMBL:EFJ13235.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ13235.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377634; EFJ13235.1; -; Genomic_DNA. DR RefSeq; XP_002985657.1; XM_002985611.1. DR EnsemblPlants; EFJ13235; EFJ13235; SELMODRAFT_424732. DR GeneID; 9640105; -. DR Gramene; EFJ13235; EFJ13235; SELMODRAFT_424732. DR KEGG; smo:SELMODRAFT_424732; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; D8SQV9; -. DR OMA; KVHIFRA; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 79 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 192 AA; 22130 MW; 1E21A3C2AD1AA1D4 CRC64; MVSYEEERRR RVEENKKRLK ELGIAEISKE IAQQTTQRAS KNQDDEPRLP RRSFCSQEDR MAAIEAAEKI QQSLDRPSTV KTMLQSHVSG GFWLSLPLSF AKKHLPKKDT MITLEDSDGQ ESESFYLAYK NGLSGGWRGF SIDHKLQDGD ALVFELMEPT RLKVHIFRAA DYQRIQGKSI TDKAQLAKRS RR // ID D8SS99_SELML Unreviewed; 826 AA. AC D8SS99; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=NPH4B-2 {ECO:0000313|EMBL:EFJ12702.1}; GN ORFNames=SELMODRAFT_451397 {ECO:0000313|EMBL:EFJ12702.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ12702.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377637; EFJ12702.1; -; Genomic_DNA. DR RefSeq; XP_002986171.1; XM_002986125.1. DR UniGene; Smo.9474; -. DR STRING; 88036.EFJ12702; -. DR EnsemblPlants; EFJ12702; EFJ12702; SELMODRAFT_451397. DR GeneID; 9639845; -. DR Gramene; EFJ12702; EFJ12702; SELMODRAFT_451397. DR KEGG; smo:SELMODRAFT_451397; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; D8SS99; -. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 752 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 826 AA; 91670 MW; 68289E57E45EBAEC CRC64; MSHVSSLTGG DKKAINQALW LECAGPLITL PAIGSQVVYF PQGHSEQVIA STHKEADFEV PSYPNLPPQL FCILHNITLH ADQENDEVFA QMTLQPFSQT ALLKDPFLLP DFGIQTKQTI VSFSKTLTAS DTSTHGGFSI PRRAAEKVFP PLDFTKTPPA QELVARDLHN NEWHFRHIYR GQPRRHLLTT GWSVFVSAKR LQAGDTVLFL RDEQGQHMLG IRRANRQQTN LPTSLLSSDS MLIGVLAAAA HAASTNSRFT IFYNPRASPS EFVIPLAKYQ KALHPPQLTV GMRFRMEMET EDSSTRRYMG TITGIGDLDP VRWPNSHWRS LKVGWDESTA GQKQRRVSAW EIEPLTVPFL LCNSSFLLRS KRPRGTEEEL QMKAPSIWAR GEEGKFSMQN MNFPGLSGMD HWLQLQQKAG GSAAVTPPPP VIQPGYYSSI LQEMRTIDAT PKQLMQSPQA FQPMQFNQSI PPLLQQQQQQ AQQMMHLPPN VPEAASMHAP YIPAALKTPP DQEVNRNSNS YPPLIIEDGV SYTSMLQGSA PASLPKQQHH QQQAGMLTCS SLDHQTNWMP SLREGDASIP VDASLLPPSS SQQALDQDND PRSHVLFGVN IDGQVPPSYA PPPFSKPKDF SGAQPDIALL HAAEENGVPQ PSWPQQVYPP PVRTFTKVHK VGSVGRSLDI TRFKNYHELR NELTRMFGLE HDHKSGWQLV FIDNENDMLL LGDDPWDEFI GCVKSIRILS SSEILQMNQE HMEWLNSIPL HQQQKQASSS SDDHRPCGDV PAITTATPTA ATTTTATTAT TTAQAGNVPR AMSSYNSDPS CVSDGI // ID D8SSB2_SELML Unreviewed; 961 AA. AC D8SSB2; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=NPH4C-2 {ECO:0000313|EMBL:EFJ12710.1}; GN ORFNames=SELMODRAFT_182255 {ECO:0000313|EMBL:EFJ12710.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ12710.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377637; EFJ12710.1; -; Genomic_DNA. DR RefSeq; XP_002986179.1; XM_002986133.1. DR UniGene; Smo.1674; -. DR STRING; 88036.EFJ12710; -. DR EnsemblPlants; EFJ12710; EFJ12710; SELMODRAFT_182255. DR GeneID; 9639853; -. DR Gramene; EFJ12710; EFJ12710; SELMODRAFT_182255. DR KEGG; smo:SELMODRAFT_182255; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; D8SSB2; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 4.10.280.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR011598; bHLH_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 825 912 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 510 553 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 961 AA; 107719 MW; C3DA36D4F870918A CRC64; MNCLLAGEKK AMNTALWLEC AGPLVTLPTV GSHVVYFPQG HSEQVVASTT QKDGVEAEIP NYPNLPAHLI CHLHNITLHA DPDTDEVYAQ MTLQPVQNDK EPFLTPDLGI QPKQQTLSFC KTLTASDTST HGGFSIPRRA AEKVFPPLDF TKQPPAQELV AKDLHNQQWT FRHIYRGQPR RHLLTTGWSV FVSAKRLQAG DTVLFIRDEN NHLLLGIRRA NRQQANVPSS LLSSDSMLIG VLAAAAHAAT TNSRFTIFYN PRASFSEFVV PFCRFSKATY HPRVTVGMRF RMELETEDSS TRRYMGTITG IGDLDSVRWP NSLWRTLKVG WDESTAGQRQ KRVSLWEIEP LTAPYFPCTS SLFLRKRTRL DGMLSFCAGE LDELDAIRSQ VWARAEDGKM DIRALNAAGL SLEHWLRFQH KPEAAIATAS QPDYYRAMAA QALQEFRSVD SAKQQHQQQQ QQQQQQQQFV TPPIFQPQQL QQQQQQLHHQ QQQQQSSHHQ QQQQHHHHHQ QQHRQQQQQQ QQQQQQQQQQ QQQQQQQQQL QLQQQQQQQQ QQQSYQLQVP ASLQQTVPLA SRLTPGFSED SGASFGSMPA NNMSLQSLLN RSNPDALLQE SQYSSQPVAA ALKQNQLPLQ QQQQQQIPAP GLLSQEPQLS GSWMSSIRDS TGPASAVLSP RTLDSSGNPY MVQPSPSGGA AAAAHLSHLP PPPAAAAAAA PTPPYSVYRD VSSSHQEQDV QSDLRSNSHL LFGVNIDSPL MLSSAAAAVA QGFAPADKAK DVSFSMIGSP SGSDMHMSGG TAVALDDSPT SWQQQQHQQQ QQQQQQQQVQ PSPMRTFTKV VYKTGSVGRS IDVTRLKNYE ELRRDIARMF NLEGQLLMDS CRSSWQLVFV DYEGDVLLVG DDPWEEFVGC VRFIKILSPS EVQQLNRENL ESIAAVPNQR QTSSSSDDCA NPTNNFAQDP RLSYHHRPDF C // ID D8SXH3_SELML Unreviewed; 434 AA. AC D8SXH3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ10887.1}; GN ORFNames=SELMODRAFT_426785 {ECO:0000313|EMBL:EFJ10887.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ10887.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377651; EFJ10887.1; -; Genomic_DNA. DR RefSeq; XP_002988095.1; XM_002988049.1. DR EnsemblPlants; EFJ10887; EFJ10887; SELMODRAFT_426785. DR GeneID; 9656091; -. DR Gramene; EFJ10887; EFJ10887; SELMODRAFT_426785. DR KEGG; smo:SELMODRAFT_426785; -. DR InParanoid; D8SXH3; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 273 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 273 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 434 AA; 45886 MW; 5038D1284AA1AC10 CRC64; MSFAKTVTSS DMAAMAIPGP VYEKHRNEAF RGTVALAHGG RDWQVDASSG SFTTGWKEFW LGNALNEGDC LVFRHQSAGR FALEIFGSDG SPKEGGVGAP ANKSVSSSSA LKRSRDDLPA AMEVVVKDCL VHLEDGSSLK FVVTKIPPED PAGEPFTPLV SAAKASDALP RSSRMTRSSA PVAKAPSPDA KDDSPAPKKA KIDSPKRTRK TPPPSRKQEE VSKMDSSSEK NKEPTAKSSG KKKKKNQDVP CDSPALLRAE AFKATIPSTN PSTAIVMKKS CLHPCYYLTI PKDFAEKLPH ENKMLTVESN AVKEPWDVKW LAANRAFSGG WNKVAQFHNL ELDDACVLEV LNKSGVRISV FKADGSSSVA ANQSAPAIAN GEIGEVAEAG FATVDEGDAI AAMEKLCGDG GVKAKDGGGE NGDGGDNENA GQVI // ID D8T161_SELML Unreviewed; 445 AA. AC D8T161; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein ABI3B-2 {ECO:0000313|EMBL:EFJ09582.1}; GN Name=ABI3B-2 {ECO:0000313|EMBL:EFJ09582.1}; GN ORFNames=SELMODRAFT_427934 {ECO:0000313|EMBL:EFJ09582.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ09582.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377661; EFJ09582.1; -; Genomic_DNA. DR RefSeq; XP_002989308.1; XM_002989262.1. DR STRING; 88036.EFJ09582; -. DR EnsemblPlants; EFJ09582; EFJ09582; SELMODRAFT_427934. DR GeneID; 9650493; -. DR Gramene; EFJ09582; EFJ09582; SELMODRAFT_427934. DR KEGG; smo:SELMODRAFT_427934; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; D8T161; -. DR OrthoDB; EOG09360NNM; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 238 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 238 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 445 AA; 49069 MW; AFD6C27F85D8D584 CRC64; MAADSNPSSL SSDYQNGSTS FQLADDHERD QNVPWILDQA DHPALMIDEA EHEPWGSAGE DDKLGNLDME QQLRINHSFM QIQSIFGAEG ESDDPIKMPL LGNCWSAEDP SPWNHSAAFP EDQHQQGNGF YSHDHSNVFV SLPPPQQQLQ IIESSTLMGG GQIMAVASSS PCASTRAARK NCMARKRRPM LGTSKPGPAS VSAAAAPAPA VAAVSDAETT LPDDHTQGLQ NKNLKFLLQK QLKPSDVGNL GRIVLPKKEA ESRLPYLSAR EGMTLAMEDM TSKRTWNLRY RFWPNNKSRM YLLENTGEFI RSHKLCEGDY LLLYKDSRNG KYVIYGKKDV SGSNEKRQAP KQQEGCMVKR SRSFDCERRK PAAPTLTSSS SSSSILTTAG VIDTGLNFTD IKQGLDKDQE SFGSSNVVFD IDQFPLLEAN DLAIDEILDL VDLPS // ID D8T5N9_SELML Unreviewed; 824 AA. AC D8T5N9; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=NPH4A-2 {ECO:0000313|EMBL:EFJ07998.1}; GN ORFNames=SELMODRAFT_451392 {ECO:0000313|EMBL:EFJ07998.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ07998.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377678; EFJ07998.1; -; Genomic_DNA. DR RefSeq; XP_002990954.1; XM_002990908.1. DR UniGene; Smo.14646; -. DR STRING; 88036.EFJ07998; -. DR EnsemblPlants; EFJ07998; EFJ07998; SELMODRAFT_451392. DR GeneID; 9659971; -. DR Gramene; EFJ07998; EFJ07998; SELMODRAFT_451392. DR KEGG; smo:SELMODRAFT_451392; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; D8T5N9; -. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 706 790 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 824 AA; 92526 MW; 9252F5ECB43B76F1 CRC64; MLAELGVYQS SKPQCFTPGV KRGPNPELWH ACAGPLVSLP SVGTRVVYFP QGHSEQVAAS TQKEADADIP SYPNLPPHLV CQLHNITLHA DTETDEVYAQ MTLQPMNAQE KDSFMVSDLG RQNRQPSEYF CKTLTASDTS THGGFSIPRR AAEKVFPPLD FSQQPPAQEI VARDLHDTEW RFRHIYRGQP RRHLLTTGWS VFVSAKRLQT GDAVLFIRDE KGQLLLGIRR ANRQQASMPL SLLSTDSMYI GILAAAAHAN STSSRFTIFY NPRASPSEFV IPLSKYYNAV YNNMQVSPGM RFRMQFETEE SGIRRHTGTI VGSGDLDPVR WPNSHWRSLK VEWDEPAAGE KQQRISLWEI EPASTPYLVC SPSFTFRSKR PWSQAPVILE AFNSCLFSHS GEVEAVDAGK WIKSEGLEKN LSWNMYSEQL MQLHQRPDSA ASGARSDFFR PDDCSRVQDA THSQTPKGLP MQQQIHMKGQ QQQHTQLLSA LPQQQQAHEY NCHQHQQQQQ QQQQVVQLSQ QSSESALHLS SGPQSLKQRG DSSDIALSSY GRSYQSSMLE QQYARNIGGE QEIQIKDTHG WYVGEKDFTT EQPLQFGHLD GYSATGPVFS INDIEQGVTA GLTFKDAQQQ QEQDTLPLDS RSHLLFGVSI EPECITPSSQ GPKSKDGQQR VLGSTSSDLH LSSDNGTLEE PAYLQRSSSA QPMLPRTFTK VYKTGSVGRS LDLTRLNCYD GLRSELARMF GLEGQLEDPH RSGWQLVFVD NENDVLLVGD DPWEEFVSCV RCIKIMSPSE LSHMNQEQLN AIQARTNEEF TEQDANPGVE VEEF // ID D8T7G8_SELML Unreviewed; 262 AA. AC D8T7G8; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ07460.1}; DE Flags: Fragment; GN ORFNames=SELMODRAFT_133669 {ECO:0000313|EMBL:EFJ07460.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ07460.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00585200}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377685; EFJ07460.1; -; Genomic_DNA. DR RefSeq; XP_002991538.1; XM_002991492.1. DR EnsemblPlants; EFJ07460; EFJ07460; SELMODRAFT_133669. DR GeneID; 9639652; -. DR Gramene; EFJ07460; EFJ07460; SELMODRAFT_133669. DR KEGG; smo:SELMODRAFT_133669; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; D8T7G8; -. DR KO; K09287; -. DR OMA; PRENSGV; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585222}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585208}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00585199}. FT DOMAIN 30 85 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 159 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 85 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 159 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 262 262 {ECO:0000313|EMBL:EFJ07460.1}. SQ SEQUENCE 262 AA; 29245 MW; 949B706A256C6526 CRC64; MNSTTKSGGG GGGGGAMVLS SESGKLPSSQ YKGVVPQPNG RWGAQIYEKH QRVWLGTFNK EEEAARAYDR AAIKFRGRDA MTNFRPVHDS DPEASFLRLH SKEQVVDMLR RHTYDEELDQ SRKITHARAV AAAAAEAAAA SIAIPSATAA RAVHREHLFD KAVTPSDVGK LNRLVIPKQH AERCFPLDLS ANEKGLLLSF EDITGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKKLDAGD IVTFERGPGQ ELYISWRRRP VP // ID D8T8C7_SELML Unreviewed; 552 AA. AC D8T8C7; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ07086.1}; GN ORFNames=SELMODRAFT_430108 {ECO:0000313|EMBL:EFJ07086.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ07086.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377689; EFJ07086.1; -; Genomic_DNA. DR RefSeq; XP_002991824.1; XM_002991778.1. DR EnsemblPlants; EFJ07086; EFJ07086; SELMODRAFT_430108. DR GeneID; 9644472; -. DR Gramene; EFJ07086; EFJ07086; SELMODRAFT_430108. DR KEGG; smo:SELMODRAFT_430108; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR InParanoid; D8T8C7; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 345 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 345 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 552 AA; 58530 MW; 1B1FEEAA8190F0A7 CRC64; MAATNSRISF TKIMKKAHMA EMPIPKPVYE KYSTGALRGT VILELGGSDW QVEVGSGSFT TGWKQFCLDN AIKENDSLVF HHQSARRFSV ELYSSDGSAK PGGGAKSSTS GGNALAEAME KVIKECVVHL DEESSLKFVI SKVPRVVDVE VAEPSTPRKI VKAAGIGNGP SARTRSSPKT APPPAAVARV ESRKKKKQPL PVSESDAEEE APPAKRARTE PSKRREVTRA STRRSLESGS GSKGRPSRRK SKVVSKITAL EVRVDSTSTL PAAKQDDTPR ERKKVAKSGT AETKTGTAEK KTRERRKTSS ARKSSSSRGK KQVVPAADSA ALAQAVAFKT SNPSTVIVMK KSNIAPCFYL SIPNEFAKVH LPEDLKEFDM VDSTNKAWGV RWLGPPKRAF SGGWCYFAQD HNLQLNDVCV LEMLGENRVR VNIFKADPKA AQGGGEAAAP PANPAANEGA GFEAAKEDGH GDVDGGDGGN GGDGGGGGGG GGGERDLDAV VTGITGGSNR DEDGIAEEEA DDDEEGDDED YDPKEDDGGD DGDGGDDKET WK // ID D8T8Y2_SELML Unreviewed; 781 AA. AC D8T8Y2; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ETT1-2 {ECO:0000313|EMBL:EFJ06913.1}; GN ORFNames=SELMODRAFT_430287 {ECO:0000313|EMBL:EFJ06913.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ06913.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377692; EFJ06913.1; -; Genomic_DNA. DR RefSeq; XP_002992064.1; XM_002992018.1. DR UniGene; Smo.14695; -. DR EnsemblPlants; EFJ06913; EFJ06913; SELMODRAFT_430287. DR GeneID; 9650218; -. DR Gramene; EFJ06913; EFJ06913; SELMODRAFT_430287. DR KEGG; smo:SELMODRAFT_430287; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; D8T8Y2; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561}. FT DOMAIN 187 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 665 746 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 187 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 781 AA; 86967 MW; 06F0E1715247AE07 CRC64; MRESGIGSPR MYATPGGAAA ATSGTIFARP AGPRPDGSSS SPQVPAMGRQ IPQRVSAFSG YVSSGSSGGS SLDSEAWHAC AGPLVCLPLV GDRVVYFPQG HIEQVLASTN QNAADLQIPQ YNLPSQIFCR VLNLSLGAYR ETDEVYAQMT LVPENELFYI RISDQQLDQS LELDEPTASS KAKLSMFCKN LTSSDTSTHG GFSVPRRAAE ECFPRLDYQQ TPPAQEIIAK DLHGIEWKFR HIYRGQPRRH LLTTGWSVFV SQKKLVAGDT VLFVRGDNGE LRIGIRRAVR TQSSVTSSSL LSSHSMQIGV LAAAAHAVST KTMFTVFYNP RASPAEFVVP YHKYVKSFKM NILIGMRFKM RFETEDSSER RYMGTITGIG DIDPARWPGS KWRFLKVGWD EHAASERQER VSPWEIEPFI APNVTPPVST KRFRPTMLTD ISVSRKSYDN HLRQILQANR NLQTSHKYEA DERENFLLKS PTALYSEAKV TSRVTEGHSV PGFPSGLPSP GNEGLPSHRK VDMHQQQLRL CVQQFREQKV PLQFEKPQQP SPTSSFASRQ AALSCPVYLQ PQHTTDNSFL KLLMSPTLSS LQQAPRVEEP LARGNANDSD RECKLFGFSL KPKTALASTV KDDVHKDLES EASGFRKCFT GQNWNQQQQQ QQPSRTCTKV HKHGAVGRAL DLSKFRGYTQ LLEELQHLFG IDESLNGSEW QTVYVDNEGD MLLVGDDPWE EFCTTVRCIR ILSPAEIQKL TVQARNSSTE EPSSRLSDQQ DSSSPPATSD E // ID D8TBN5_SELML Unreviewed; 549 AA. AC D8TBN5; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ05930.1}; GN ORFNames=SELMODRAFT_431144 {ECO:0000313|EMBL:EFJ05930.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ05930.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377711; EFJ05930.1; -; Genomic_DNA. DR RefSeq; XP_002992984.1; XM_002992938.1. DR EnsemblPlants; EFJ05930; EFJ05930; SELMODRAFT_431144. DR GeneID; 9652130; -. DR Gramene; EFJ05930; EFJ05930; SELMODRAFT_431144. DR KEGG; smo:SELMODRAFT_431144; -. DR eggNOG; ENOG410JDKA; Eukaryota. DR eggNOG; ENOG410YRTR; LUCA. DR InParanoid; D8TBN5; -. DR OMA; HISIGRA; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 340 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 340 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 549 AA; 57999 MW; 5BB3A1A35FE60BCF CRC64; MAATNSRISF TKIMKKAHMA EMPIPKPVYE KYSTGALRGT VILELGGSDW QVEVGSGSFT TGWKQFCLDN AIKENDSLVF HHQSARRFSV ELYSSDGSAK PGGGAKSSTS GGNALAEAME KVIKECVVHL DEESSLKFVI SKVPRVVDVE VAEPSTPRKI VKAAGIGNGP SARTRSSPKT APPPAAVARV ESRKKKKQPL PVSESDAEEE APPAKRARTE PSKRREVTRA STRRSLESGS GSKGRPSRRK SKVVSKITAL EVRVDSTSTL PAAKQEDTPR ERKKVAKSGK GTAEKKTRER RKTSSARKSS SSRGKKQVIP AADSAALAQA AAFKTSNPST VIVMKKSNIA PCFYLSIPNE FAKVHLPEDL KEFDMVDSTN KAWGVRWLGP PKRAFSGGWC YFAQDHNLQL NDVCVLEMLG ENRVRVNIFK ADPKAAQGGG EAAAPPANPA ANEGAGFEAA KEDGHGDVDG GDGGDGGGGG GGGGGGGGER DLDAVVTGIT GGSNRDEDGI AEEEADDDEE GDDEDYDPKE DDGGDDGGDD GDGGDDKET // ID D8TDC9_SELML Unreviewed; 653 AA. AC D8TDC9; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein ABI3A-2 {ECO:0000313|EMBL:EFJ05287.1}; GN Name=ABI3A-2 {ECO:0000313|EMBL:EFJ05287.1}; GN ORFNames=SELMODRAFT_431656 {ECO:0000313|EMBL:EFJ05287.1}; OS Selaginella moellendorffii (Spikemoss). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella. OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514}; RN [1] {ECO:0000313|EMBL:EFJ05287.1, ECO:0000313|Proteomes:UP000001514} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=21551031; DOI=10.1126/science.1203810; RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., RA Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., RA Bonawitz N.D., Chapple C., Cheng C., Correa L.G., Dacre M., RA DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., RA Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., RA Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., RA Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., RA Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., RA Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., RA Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., RA Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., RA Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., RA Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., RA Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., RA Rokhsar D., Grigoriev I.V.; RT "The Selaginella genome identifies genetic changes associated with the RT evolution of vascular plants."; RL Science 332:960-963(2011). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL377729; EFJ05287.1; -; Genomic_DNA. DR RefSeq; XP_002993595.1; XM_002993549.1. DR UniGene; Smo.14753; -. DR STRING; 88036.EFJ05287; -. DR EnsemblPlants; EFJ05287; EFJ05287; SELMODRAFT_431656. DR GeneID; 9663436; -. DR Gramene; EFJ05287; EFJ05287; SELMODRAFT_431656. DR KEGG; smo:SELMODRAFT_431656; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; D8TDC9; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000001514; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001514}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001514}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 427 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 427 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 653 AA; 69478 MW; 5456B1C5B123C25F CRC64; MIPCNGNSSS SGGGGNGSEG EERSSSQESQ GAVAAAGNVG GESTEAAAAI SCLELDAWIR DDDGAIDCMM MLPEVPLDGD STSPEDSGMH AQDCCEQFEH KQHEDEMIFC RSSSSCSSTF PDSCANQETL ELNIPDDFFG DRQQQHDEER QRQAEQQLLP PLTEARSGHQ FAPDLRKIIV KKPVMDKAVE RLGGGRRGAM RLWNIIQVWL KHQQQQGGGG SMDGFSLPFE NFGGFMDVPV HNQQQQQQQH FQHPGFPVAG GFGGEATSTG GGGGGQFYGD PNVVPGQHFS SAYPDATTTA ADVATPRSMA TAPIANSASA AATTRAARKS RMARQRRHKG GFGGTSLSHS PVATSAGAWS SASTAGFLAT TATAATITTT TTSNSSLSLA TTHGAPGARE QHQHQFGTCR DGIKARMSCD KSVKFLLQKE LKPSDVGNLG RIVLPKKEAE IHLPYLSLRE GIMLAMEDVL TAQTWHFRYR FWPNNKSRMY LLEGTGDYVK SHLLKEGDLI QIYRDAKTGK HIICAKKFAA RPVTPAAETT TTTTSSKLED DCLSGASTVS DSSKDAPPVE QQRPGSRACV KKRKVTKPTV SVGAPVAANS GGGGVGGGVG GVGGGDEIER FPSIEMEDEF IDEILGMVDA EEPSSPESCK EDD // ID D8TM65_VOLCA Unreviewed; 287 AA. AC D8TM65; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFJ51447.1}; DE Flags: Fragment; GN ORFNames=VOLCADRAFT_116438 {ECO:0000313|EMBL:EFJ51447.1}; OS Volvox carteri f. nagariensis. OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. OX NCBI_TaxID=3068 {ECO:0000313|Proteomes:UP000001058}; RN [1] {ECO:0000313|EMBL:EFJ51447.1, ECO:0000313|Proteomes:UP000001058} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=f. Nagariensis / Eve {ECO:0000313|Proteomes:UP000001058}; RX PubMed=20616280; DOI=10.1126/science.1188800; RA Prochnik S.E., Umen J., Nedelcu A.M., Hallmann A., Miller S.M., RA Nishii I., Ferris P., Kuo A., Mitros T., Fritz-Laylin L.K., RA Hellsten U., Chapman J., Simakov O., Rensing S.A., Terry A., RA Pangilinan J., Kapitonov V., Jurka J., Salamov A., Shapiro H., RA Schmutz J., Grimwood J., Lindquist E., Lucas S., Grigoriev I.V., RA Schmitt R., Kirk D., Rokhsar D.S.; RT "Genomic analysis of organismal complexity in the multicellular green RT alga Volvox carteri."; RL Science 329:223-226(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL378327; EFJ51447.1; -; Genomic_DNA. DR RefSeq; XP_002947399.1; XM_002947353.1. DR GeneID; 9620506; -. DR KEGG; vcn:VOLCADRAFT_116438; -. DR InParanoid; D8TM65; -. DR Proteomes; UP000001058; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000001058}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000001058}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 36 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EFJ51447.1}. SQ SEQUENCE 287 AA; 28973 MW; 09A88726EF4E6F3C CRC64; TVAATAPKSA GAPFDPEALA AALTARMSAA GASIIFEKAL TASDVSGGGR VVVPKSIAEQ YFPKLEQPSG VTISATDLDG RSYTFKWRFW VNNSSRMYLL EGAGELHRNY GLEVGDVMVF AQKADGSLMV AGRAASKGAA AAAAAAQPIP GRLTAGGGPS TAVASADASL LRGGGGGGRK RKVSSSAATA AAATGAAVGG LAADPTRFRV RPGDEGLTSL AVLDMEAPSD GIFRAVVQHV SPVSLGVALA RNNRWTATLE VAGEFYQAFF DSREDAVEAV TAAGASP // ID D9HNT3_MAIZE Unreviewed; 657 AA. AC D9HNT3; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF6 {ECO:0000313|EMBL:ADG43140.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ADG43140.1}; RN [1] {ECO:0000313|EMBL:ADG43140.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM004521; ADG43140.1; -; Genomic_DNA. DR STRING; 4577.GRMZM2G017187_P02; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR OMA; EIPERRF; -. DR OrthoDB; EOG09360207; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 657 AA; 72950 MW; 26D84ED1FCC9473E CRC64; MDAPNPGAAA GPGMPSDALY QELWHACAGP LVTVPRQGER VYYFPQGHME QLEASAHHQQ LDQYLPMFDL PPKILCRVVN VELRAEADSD EVYAQIMLQP EADQNELTSL DAEPQEREKC TAHSFCKTLT ASDTSTHGGF SVLRRHAEEC LPQLDMSQNP PCQELVAKDL HGTEWHFRHI FRGQPKRHLL TTGWSVFVSS KRLVSGDAFI FMRGENGELR VGVRRLMRQV NSMPSSVISS HSMHLGVLAT ASHAISTGTL FSVFYKPRTS RSDFIVSVNK YLEAKKQKIS VGMRFKMRFE GDDAPERRFS GTIIGIGSLP AMSKSLWADS DWRSLKVQWD EPSSILRPDR ISPWEVEPLD AANPQSPQPP LRAKRPRPPA SPCMVSELPS GFGLWKSPIE SSCTLSFSEP QRARELFPSI PTSTLSSSSN VSFNSKNEPS MLTSQFYWSA RHTRADSCAA STNTVVIEKK QEPSSGGCRL FGINICSAEE EVLPEVTAPG VGYEQTAASV ELNSDKLSQP SDVNNSDALA ASSERSPLES QSRQVRSCTK VIMQGMAVGR AVDLTKLSGY SDLCQKLEEM FDIQGELGST LKKWRVIFTD DEDDMMLVGD DPWDEFCRMV KRIYIYTYEE AKKLTSKSKL PVSSDSSKLS AANSLSE // ID D9HNT4_MAIZE Unreviewed; 686 AA. AC D9HNT4; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF7 {ECO:0000313|EMBL:ADG43141.1}; GN Synonyms=100857063 {ECO:0000313|EnsemblPlants:Zm00001d039267_P004}; GN ORFNames=ZEAMMB73_Zm00001d039267 {ECO:0000313|EMBL:ONM28163.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ADG43141.1}; RN [1] {ECO:0000313|EMBL:ADG43141.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ONM28163.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM28163.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d039267_P004} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d039267_P004}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM004522; ADG43141.1; -; Genomic_DNA. DR EMBL; CM007649; ONM28163.1; -; Genomic_DNA. DR EMBL; CM007649; ONM28169.1; -; Genomic_DNA. DR RefSeq; XP_008673473.1; XM_008675251.1. DR UniGene; Zm.18593; -. DR STRING; 4577.GRMZM2G475263_P01; -. DR EnsemblPlants; Zm00001d039267_T004; Zm00001d039267_P004; Zm00001d039267. DR EnsemblPlants; Zm00001d039267_T011; Zm00001d039267_P011; Zm00001d039267. DR GeneID; 100857063; -. DR Gramene; Zm00001d039267_T004; Zm00001d039267_P004; Zm00001d039267. DR Gramene; Zm00001d039267_T011; Zm00001d039267_P011; Zm00001d039267. DR KEGG; zma:100857063; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000007305; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 584 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 76716 MW; A4AC75D4AE1A6C51 CRC64; MAQGAGRDPE ELFEELWRAC AGPLVELPQT NERVFYFLQG HLEQLQEPTD PALLAEQIKM FQVPNKILCK VVNVELKAET ETDEMYAQIT LQPEPDQVDL PQLPEPPLQE TSRPVVHSFC KILTPSDTST HGGFSVLRRH ANECLPALDM SMPTPTQELI TKDLHGSEWR FKHIYRGQPR RHLLTTGWST FVTSKKLIAG DAFVYLRSET GQQRVGVRRL VQKQSTMPAS VISSQSMHLG VLASASHAIR THSIFLVYYR PRLSQSQYIV RLNKYLESSK IGFDVGMRFK MSFEGDDVPI KKFSGTVVDK GDLSPQWQGS EWKTLKVKWD EATNLNGPER VSSWEIEPFD ASAPAITMPV QPSMKNKRPR ETAEGLDIHA LEPAQEFWLS GRPEQHEKTS VSSSEPKHQV AWTSERAGYS AMSSSICQNS AVTGSWFKGF NSSGSHPSLP EISQKLFQVT SNDARVPPWP GLSAYHADEP SSKLSCNTAL CSYQTEEVAP RFSNAVEEEK KEPGMFRLFG VNLINHARSS ATADKTSVGA GETSARAAGS FEDSAQLSRV TKDHTHMVNG SPREIQSHQS CSGRSRIKVQ MHGNDVCRAV DLGNLDGYEQ LMGEVGEMFE IKDLGSKEKE EWKVTFINDE NETMEVGAVP WQEFCQMVRK IVIHSIGDRG HMEACPCLGQ DGKRDY // ID D9HNT8_MAIZE Unreviewed; 688 AA. AC D9HNT8; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 46. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF11 {ECO:0000313|EMBL:ADG43145.1}; GN Synonyms=100383168 {ECO:0000313|EnsemblPlants:Zm00001d043431_P001}; GN ORFNames=ZEAMMB73_Zm00001d043431 {ECO:0000313|EMBL:ONM37983.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ADG43145.1}; RN [1] {ECO:0000313|EMBL:ADG43145.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ONM37983.1, ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RC TISSUE=Seedling {ECO:0000313|EMBL:ONM37983.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d043431_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d043431_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM004526; ADG43145.1; -; Genomic_DNA. DR EMBL; CM007649; ONM37983.1; -; Genomic_DNA. DR EMBL; CM007649; ONM37990.1; -; Genomic_DNA. DR EMBL; CM007649; ONM37991.1; -; Genomic_DNA. DR RefSeq; XP_008673159.1; XM_008674937.1. DR UniGene; Zm.88033; -. DR STRING; 4577.GRMZM2G056120_P01; -. DR EnsemblPlants; Zm00001d043431_T001; Zm00001d043431_P001; Zm00001d043431. DR EnsemblPlants; Zm00001d043431_T003; Zm00001d043431_P003; Zm00001d043431. DR EnsemblPlants; Zm00001d043431_T011; Zm00001d043431_P011; Zm00001d043431. DR GeneID; 100383168; -. DR Gramene; Zm00001d043431_T001; Zm00001d043431_P001; Zm00001d043431. DR Gramene; Zm00001d043431_T003; Zm00001d043431_P003; Zm00001d043431. DR Gramene; Zm00001d043431_T011; Zm00001d043431_P011; Zm00001d043431. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000007305; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 688 AA; 74992 MW; EF736AAEA92EFA2A CRC64; MGIDLNMADG ESQERRPPPA VCRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGNVA VDLPPHVACR VADVELCADA ATDEVYARLA LVAEGEAFGR NLRGGGVDGD DDMEDFDVER KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFDD FSCDSTKRHT LLAVADSLKH KSVFHISYNP RATASEYIIP HHKFLKSLNL PFCIGARINL QCHNEDVSER RSGMVVHVSE IDPMKWPGSK WRSLLVRWED GVECNGQDRV SPWEIEIAGG SVSVAHSVSA SSSKRTKLCP QGNLDVPTMY VTGNGNGCTD SVETGKFPRV LQGQDLMSFR TRHVPSAPQT VEAAKLQSSG ASRFLSNARG CALGGPTSRL AVHNSDFTYQ SVGFNESIGF SEVLQGQEIS RAVPMFQGMM SEACSLKGGY GLHSYMRTPV AVTGLSATTQ ECSLTLSTPP GAQVPSVYPD NIFNRTVVRQ LGLASKFDGG ATNAQQSVPF DRPREIWSKP QHEISDQTKM DHFETRRASA PGDDAAKHGS GGEVVRKTSC RLFGFSLTEK ILPADDDGIK EVTYEPECQN PRMLDLFGYN CSAPSAALPA LCAAPFGM // ID D9HNU0_MAIZE Unreviewed; 850 AA. AC D9HNU0; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 54. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF13 {ECO:0000313|EMBL:ADG43147.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ADG43147.1}; RN [1] {ECO:0000313|EMBL:ADG43147.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM004528; ADG43147.1; -; Genomic_DNA. DR RefSeq; XP_008676891.1; XM_008678669.1. DR UniGene; Zm.2903; -. DR STRING; 4577.GRMZM2G378580_P01; -. DR GeneID; 100274564; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 850 AA; 93151 MW; 1562462E82447115 CRC64; MTSSAAAAAA AAQVAGGGGG GEGDAAAAAR GGGGTEDGMY TELWNLCAGP LVTVPRVGDK VYYFPQGHIE QVEASTNQVA EQHMQFYDLP WKILCEVMNV ELKAEPDNDE VYAQLTLLPE SKQPEENGSS EEMPASPPAA LARPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TRQPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGDS GELRVGVRRA MRQQANVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV PCDRYMESLK RNYPIGMRFK MRFEGEEAPE QRFTGTIVGN VDPDQAGWAE SKWRYLKVRW DEASSIPRPE RVSPWQIEPA VSPPPINPLP VHRPKRPRSN AVASLPESSA PTKEAAPKVT LETQQHALQR PLQTQDNVAP KSVFGDNSEL DSAHKSSLRP SGFDLDKSTI GMQRKLGSDI WMRMNRPDGY SEMLSGYQPP NEGARNSQGF CSLPDQIAAG RPNFWHTVNA HYQDQQGNHN LFPGSWSMMP SSTGFGMNRQ SYPMIQEVGG MSQSCTNTKF GNGVYAALPG RGIDRYPSGW FGHTTPGGRV DDAQPRVIKP QPLVLAHGEA LKMKGNSCKL FGIHLDSPAK SEPLKSPPSV ATPAAEKWMA DGIDADKSPE PHKTPKQLGA TQVDPVPERC PQASRGTQCK SQGGSTRSCK KVHKQGMALG RSVDLTKFNG YTELVAELDE MFDFNGELKG CSKEWMVVYT DYEGDMMLVG DDPWNEFCSM VHKIFVYTRE EVQRMNPGAL NSRPEDSGLA NSTERGSAST AAAREAPGYQ SASSLNSDNC // ID D9HNU4_MAIZE Unreviewed; 644 AA. AC D9HNU4; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 52. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF17 {ECO:0000313|EMBL:ADG43151.1}; GN Synonyms=100272511 {ECO:0000313|EnsemblPlants:Zm00001d014013_P002}; GN ORFNames=ZEAMMB73_Zm00001d014013 {ECO:0000313|EMBL:AQK65042.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ADG43151.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:ADG43151.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AQK65042.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK65042.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d014013_P002} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d014013_P002}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM004532; ADG43151.1; -; Genomic_DNA. DR EMBL; CM000781; AQK65042.1; -; Genomic_DNA. DR RefSeq; NP_001335723.1; NM_001348794.1. DR UniGene; Zm.83414; -. DR STRING; 4577.GRMZM2G159399_P01; -. DR EnsemblPlants; Zm00001d014013_T002; Zm00001d014013_P002; Zm00001d014013. DR GeneID; 100272511; -. DR Gramene; Zm00001d014013_T002; Zm00001d014013_P002; Zm00001d014013. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; NDHEYRE; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007305; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 635 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 644 AA; 70964 MW; 4439159A148206FC CRC64; MKEAGEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGGAT DLAGARARPL PPLVLCTVAG VRFLADPETD EVFAKIRLVP AAPGEVEFGE PREFGIDPED AREKLSSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIFRGTPRR HLLTTGWSAF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVSCGGMECI SGWNAPVYGA LSAFLKDEEG KITKGPGGYM RGRGKVEITD VVEAASLAAS GQPFEVVYYP RASTPEFVVK AASVQNAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASA QVADTIRWPN SPWRLLQVSW DEPDLLQNVK CVNPWLVEIV SSIPPIHLGT FSPPRKKLRV AQHPDFPFEG QLLNPIFHGN PLGPSNSPLR CFSDIAPAGI QGARHAQFGL PLTDYQLNQL HLGFNRLGAM TPTPRISKGF VISSAPASES VSCLLTIGTP QATEKSDDIK RPHIMLFGKP ILTEQQMDSG GSREGLSQDR KASELGLEDG HCKVFMESED VGRTIDLSVF GSYEELYGQL ADMFGIEKAE IMRHLCYRDA AGAVRHTGEE PFNDFMKVAR RLTIIEGTEG RPQKPLVEYM VERA // ID D9HNU6_MAIZE Unreviewed; 716 AA. AC D9HNU6; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 47. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF19 {ECO:0000313|EMBL:ADG43153.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ADG43153.1}; RN [1] {ECO:0000313|EMBL:ADG43153.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM004534; ADG43153.1; -; Genomic_DNA. DR STRING; 4577.AC207656.3_FGP002; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 77520 MW; 4DD620CDA79B5288 CRC64; MERERESDRC LDPQLWHACA GGMVQMPAVH SKVYYFPQGH AEHAQGPVDL PAGRVPALVL CRVAAVRFMA DPDTDEVFAK IRLAPVRPNE PGYADDAIGA AAASGAQEDK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPEFMHHHH QQPPPPQGGG YAGFSMFLRG EEDGGKMMAA AATRGKAARV RVRPEEVVEA ANLAVSGQPF EVVYYPRAST PEFCVKAGAV RAAMRTQWCP GMRFKMAFET EDSSRISWFM GTVSAVHVAD PIRWPNSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSNMP VIHHLTATPF SPPRKKLCVP LYPELPLEGQ FPAPMFHGSP LLGRGGAGGP MCYFPDGTPA GIQGARHAQF GISLSDLHLN KLQPGLSPHG LHRQLDHGVQ VQVQQPRIAA GLIVGGHPAA RDDVSCLLTI GTPKSKKPPS DVKKASTAAA PQLMLFGKAI LTEQQISLGG GNVVPALAKK SPSDDDDDVA ERTVSNSDVS SPGRSNQDGT SSGGGPAARA CWQEEECNNR AAGSEDDLLG HCKVFMQSED VGRTLDLSAV ASYEELYQRL ADMFGVDKAE LTSHVFYRDD ASGALKHPGD EPFSEFTKTA RRLTILTDES SDSLAR // ID D9HNV4_MAIZE Unreviewed; 1053 AA. AC D9HNV4; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 05-JUL-2017, entry version 49. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF27 {ECO:0000313|EMBL:ADG43161.1}; GN Synonyms=103637942 {ECO:0000313|EnsemblPlants:Zm00001d045026_P002}; GN ORFNames=ZEAMMB73_Zm00001d045026 {ECO:0000313|EMBL:AQL01351.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ADG43161.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:ADG43161.1} RP NUCLEOTIDE SEQUENCE. RA Xing H., Guo G., Xing G., Hu Z., Zhang Y., Ni Z., Sun Q.; RT "Genome-wide identification and expression profiling of auxin response RT factor (ARF) gene family in maize."; RL Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AIB05232.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:AQL01351.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQL01351.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EnsemblPlants:Zm00001d045026_P002} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d045026_P002}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM004542; ADG43161.1; -; Genomic_DNA. DR EMBL; KJ727741; AIB05232.1; -; mRNA. DR EMBL; CM000785; AQL01351.1; -; Genomic_DNA. DR RefSeq; XP_008659167.1; XM_008660945.1. DR STRING; 4577.GRMZM2G160005_P01; -. DR EnsemblPlants; Zm00001d045026_T002; Zm00001d045026_P002; Zm00001d045026. DR GeneID; 103637942; -. DR Gramene; Zm00001d045026_T002; Zm00001d045026_P002; Zm00001d045026. DR KEGG; zma:103637942; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000007305; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 939 1032 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 521 544 {ECO:0000256|SAM:Coils}. FT NON_TER 1053 1053 {ECO:0000313|EMBL:AIB05232.1}. SQ SEQUENCE 1053 AA; 116747 MW; 1648C06060D99D33 CRC64; MKDHGSGGVT PSPAEGEKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDTVPSYPS LPSKLICKLL SLTLHADSET DEVYAQMMLQ PVNKYDRDAM LASELGLKQN KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPLRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQAGM PDDENEVESA FKRAMPWLAD DFALKDVQNA LFPGLSLVQW MAMQQNPQML ATASPAVQSQ YLTSNALGMQ DGIGSVSEDP TKRLTMQAQN IGLPNLQAGS KVDHPAITPL AQHQQQPHHV LQQQQVQPLQ QSSAILQQQQ AQLLQQNAIH LQQQQEQLQR QQSQPQQQFK ATACLQSSDQ HKLKEQQPSG GQAASQVHLL NQILQPSSSQ LQQLGLPKSP TQRPGLPSLT TMGSLQQSQL PQTPQPQQTA EYHQALLQSQ QPQLQQLSQS ELQLQLLQKI QQQNLLSQLN PQHQSQLIQQ LSQKSQEILQ QQVLQHQFGG ADAMGQLKHL QQTPLNHNTG SLPPQQLVRS HSALTESEEP SSSTVPSGSR ISPINSFSRA NQGTRNLPEM PATPHIEHLL QEIQSKTDNR IKNDIQGSKE TVHAPNRHLA SDQLDASSAT SFCLDESPRE GFSFPPVCLD NNVQVDPREN FLIAENVDTL MPDALLSRGM SSGKGICNLP SGQRDHRDVE NELSSAAFSS QSFGVPDMSF KPGCSSDVAV ADGGMASQGL WNSQTQRMRT FTKVQKRGSV GRSIDITRYR GYEDLRHDLA CMFGIQGQLE DPYRTDWKLV YVDHENDILL VGDDPWEEFV SCVKSIKILS SVEVQQMSLD GDLGCIPQTQ ACSASDDANA WRA // ID E0CP77_VITVI Unreviewed; 217 AA. AC E0CP77; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 46. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI19534.3}; GN OrderedLocusNames=VIT_18s0001g10710 {ECO:0000313|EMBL:CBI19534.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595227; CBI19534.3; -; Genomic_DNA. DR PRIDE; E0CP77; -. DR EnsemblPlants; VIT_18s0001g10710.t01; VIT_18s0001g10710.t01; VIT_18s0001g10710. DR Gramene; VIT_18s0001g10710.t01; VIT_18s0001g10710.t01; VIT_18s0001g10710. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; E0CP77; -. DR OMA; MPAPVYK; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000009183; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 24756 MW; A5D12D2D21FCDCE9 CRC64; MVAAKLTYEE CRRKRLEENN KRLQALNLPL LSQALRESLT PKSSPAKNSK PRRVREQQVP LRRSSRVANK AYQAQKEGRD LSNRVYASEE ARTCAMERAE ELQASLEPQY PSFLKSMLQS HVTGGFWLGL PVHFCKTTLP KSDVIMNLVG EEGDEYPTVF LARKSGLSGG WKRFSVAHKL VDGDALVFQL VRPTKFKVII ELHCRLSTFI IPTMEYF // ID E0CPD4_VITVI Unreviewed; 604 AA. AC E0CPD4; DT 05-OCT-2010, integrated into UniProtKB/TrEMBL. DT 05-OCT-2010, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CBI19591.3}; GN OrderedLocusNames=VIT_18s0001g11360 {ECO:0000313|EMBL:CBI19591.3}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595227; CBI19591.3; -; Genomic_DNA. DR RefSeq; XP_002282159.3; XM_002282123.4. DR RefSeq; XP_010664617.1; XM_010666315.2. DR RefSeq; XP_010664618.1; XM_010666316.2. DR UniGene; Vvi.16221; -. DR PRIDE; E0CPD4; -. DR EnsemblPlants; VIT_18s0001g11360.t01; VIT_18s0001g11360.t01; VIT_18s0001g11360. DR GeneID; 100253936; -. DR Gramene; VIT_18s0001g11360.t01; VIT_18s0001g11360.t01; VIT_18s0001g11360. DR KEGG; vvi:100253936; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR HOGENOM; HOG000177825; -. DR InParanoid; E0CPD4; -. DR OMA; FTGRKFR; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000009183; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 264 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 494 590 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 264 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 494 590 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 66973 MW; E0A378369354A8B9 CRC64; MKNSKRPHFF EVFQPDASSE RLKIPSRFIK HMEGRTSGFV SLVGPSDNTW HVDLIQQNSD LLLHDGWPVF VRDHCIECGD SLVFRYDGNL HFTVQVFDRS SCEKEAAFHA KCSQDPGGLD DPLRKKRERE SPVVSKDKIF EGVPKKMRGS SCHVHSECIT KNLEDKMDKS DKEACKCEDL FMTEKCQAAV FSNETKKCGS PSKDSLSSMP SQLKACNEKP EAAIQSRADD EFDSRARGCG CTSLLSTFEE KKVAQSFTSS FPNFVRIMKK FNISGSYTLK IPYKFSMEHL PKCKIKIVLR NLKGDCWTVN SVPTTKVHTL HTFCGGWMAF VRGNGLKMGD ICIFELVRKC EMRVHILGAG KEGIDGQSGK TMSNGFTPGC AATSHKNPEG LPKKPKGNSS KVHLKHITKL GVSGKKGSKT HQDTVPNEMK KHGSSSKSSV SSASKACNEK PESAIQNTTS AADDLRSQAK SFVSTISAEE EKAVRSFTSS YPYFARFMKK FNISGSYTLK IPYQFSMAHL PKCKTEIVLR NLKGECWTVN SVPDTKGRMV HTFCGGWMAF VRGNDVKMGD ICMFELVGKS EMLVHISGVG KKGSDHQSGK AASN // ID E0WD85_AMBTC Unreviewed; 838 AA. AC E0WD85; DT 02-NOV-2010, integrated into UniProtKB/TrEMBL. DT 02-NOV-2010, sequence version 1. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=arf8 {ECO:0000313|EMBL:CBA11995.1}; GN ORFNames=AMTR_s00029p00157690 {ECO:0000313|EMBL:ERN09556.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:CBA11995.1}; RN [1] {ECO:0000313|EMBL:CBA11995.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Flower bud {ECO:0000313|EMBL:CBA11995.1}; RX PubMed=22977118; DOI=10.1093/molbev/mss220; RA Finet C., Berne-Dedieu A., Scutt C.P., Marletaz F.; RT "Evolution of the ARF Gene Family in Land Plants: Old Domains, New RT Tricks."; RL Mol. Biol. Evol. 30:45-56(2013). RN [2] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). RN [3] {ECO:0000313|EMBL:ERN09556.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Leaf {ECO:0000313|EMBL:ERN09556.1}; RA Albert V.A., Barbazuk W.B., Chamala S., Chanderbali A.S., RA dePamphilis C.W., Der J.P., Estill J.C., Leebens-Mack J., Ma H., RA Palmer J.D., Rounsley S., Sankoff D., Schuster S.C., Soltis D.E., RA Soltis P.S., Wessler S.R., Wing R.A.; RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN433171; CBA11995.1; -; mRNA. DR EMBL; KI392980; ERN09556.1; -; Genomic_DNA. DR RefSeq; NP_001292756.1; NM_001305827.1. DR EnsemblPlants; ERN09556; ERN09556; AMTR_s00029p00157690. DR GeneID; 18437712; -. DR Gramene; ERN09556; ERN09556; AMTR_s00029p00157690. DR KEGG; atr:18437712; -. DR OMA; PHHQYLQ; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 708 793 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 838 AA; 93206 MW; 9645CE763DFB0BAC CRC64; MKLSSSGSNP RGLEGEKRCL NSELWHACAG PLVSLPAVGS RVVYLPQGHS EQVAASTNKE IDAHIPNYPS LPPQLICQLH DVTMHADVET DEVYAQMTLQ PLTQQEQKDA YVPTVLGFPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNDKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPF AKFAKAVYHT RISVGMRFRM LFETEESGVR RYMGTITGKC DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWDIEPLT TFPMYPSPFA LRLKRPWQPG LPSLYDDKDD EGNPVMWLRG DNGERIPALQ SPSCQNLGIG NPWMQPRPDL SLQGMESNFY QALAASALQE IRSGDLVKAP FLQFQQQFNA QPQYQCFSNP LLQRQFLQQS NSQKSVTHQN PTVNENMNQT HLLQSQLNHS FGNPIHHEQF HVPNATTALS QLAISNSCSL SQPTTHGRPS AFADSNPSLS SFQTADSNPS LSSLRSVMGP FYSDENATLL NMEKTSQGMI HPQQVSFHTH TPQSMVEHEN GTSDTQGPLL FGVNIDSSSL ILPNSDSTLR LRTMEGSADS GLLQFSAQGF QAASIGAFGC PNDSGLLHNM EQRKPHNPIL VKIYKTGCVG RTLDISQFSS YEELRGKVAD MFGLEGQLDD PLRSGWQLVF VDRENDALLL GDGPWEAFVN NVWYIKILSP HDIQMMGTNG VDQLHRQSNG NHRDYTTSHD HESLNPSTGV TSVGTLDY // ID E1U2K4_SOLLC Unreviewed; 372 AA. AC E1U2K4; DT 30-NOV-2010, integrated into UniProtKB/TrEMBL. DT 30-NOV-2010, sequence version 1. DT 07-JUN-2017, entry version 44. DE SubName: Full=RAV1 {ECO:0000313|EMBL:ABY57634.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081; RN [1] {ECO:0000313|EMBL:ABY57634.1} RP NUCLEOTIDE SEQUENCE. RA Li C.-W., Chan M.-T.; RT "Tomato RAV1 (LeRAV1) gene."; RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ABY57634.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=21398258; DOI=10.1104/pp.111.174268; RA Li C.W., Su R.C., Cheng C.P., Sanjaya, You S.J., Hsieh T.H., RA Chao T.C., Chan M.T.; RT "Tomato RAV Transcription Factor Is a Pivotal Modulator Involved in RT the AP2/EREBP-Mediated Defense Pathway."; RL Plant Physiol. 156:213-227(2011). RN [3] {ECO:0000313|EnsemblPlants:Solyc04g007000.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g007000.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; EU164416; ABY57634.1; -; Genomic_DNA. DR RefSeq; XP_004236999.1; XM_004236951.3. DR STRING; 4081.Solyc04g007000.1.1; -. DR EnsemblPlants; Solyc04g007000.1.1; Solyc04g007000.1.1; Solyc04g007000.1. DR GeneID; 101259430; -. DR Gramene; Solyc04g007000.1.1; Solyc04g007000.1.1; Solyc04g007000.1. DR KEGG; sly:101259430; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR KO; K09287; -. DR OMA; NTNIATF; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000004994; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 203 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 203 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 42222 MW; D830B8A9A1AAF9A8 CRC64; MEVSCIDQEI STTSDSPSTI SPAGSPRQMG SGVSVVTDAD STNGVEAESK NTTITNNNNN KLPSSKFKGV VPQPNGRWGA QIYEKHQRIW LGTFNGEEEA ARAYDIAAQR FRGRDAVTNF KPLFDFQTEE IEISFLNSRS KVEIVEMLRK HTYNDELQHA KKVYNNNTFE MNGRSTCHTN TNIATFSLDT NEKVANIASE LLFEKVVTPS DVGKLNRLVI PKQHAERYFP LVAKVNKNDN TSKGVLLNFE DMNGKMWRFR YSYWNSSQSY VLTKGWSRYV KEKKLKAGDI VSFKRCSGVE IEDKLLIDSK NRIIRGEQVK MVRLFGVNIC KVQDVSNNVV VEKNMSVGKR MREMELLAFE CSKKQRVIID AL // ID E1Z402_CHLVA Unreviewed; 197 AA. AC E1Z402; DT 30-NOV-2010, integrated into UniProtKB/TrEMBL. DT 30-NOV-2010, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Expressed protein {ECO:0000313|EMBL:EFN58968.1}; GN ORFNames=CHLNCDRAFT_137572 {ECO:0000313|EMBL:EFN58968.1}; OS Chlorella variabilis (Green alga). OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Chlorellaceae; Chlorella. OX NCBI_TaxID=554065 {ECO:0000313|Proteomes:UP000008141}; RN [1] {ECO:0000313|EMBL:EFN58968.1, ECO:0000313|Proteomes:UP000008141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=NC64A {ECO:0000313|EMBL:EFN58968.1, RC ECO:0000313|Proteomes:UP000008141}; RX PubMed=20852019; DOI=10.1105/tpc.110.076406; RA Blanc G., Duncan G., Agarkova I., Borodovsky M., Gurnon J., Kuo A., RA Lindquist E., Lucas S., Pangilinan J., Polle J., Salamov A., Terry A., RA Yamada T., Dunigan D.D., Grigoriev I.V., Claverie J.M., RA Van Etten J.L.; RT "The Chlorella variabilis NC64A genome reveals adaptation to RT photosymbiosis, coevolution with viruses, and cryptic sex."; RL Plant Cell 22:2943-2955(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL433836; EFN58968.1; -; Genomic_DNA. DR RefSeq; XP_005851070.1; XM_005851008.1. DR GeneID; 17358767; -. DR KEGG; cvr:CHLNCDRAFT_137572; -. DR Proteomes; UP000008141; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000008141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 1 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 197 AA; 20804 MW; CB51BC0E9994B6A2 CRC64; MEIIPASCLQ GSGLVLPAEF RDEVVKDSGA YTLQNSQGKQ WPCTITRKTQ GGHERADITG GWRPFASANA FQAGDEILVK SLGNRPSRLQ ITKTGRTGTP KGTPRAAKTP AKTPAKTPRS RSAGKPKSAS KTPASGGVAK RRGSSSTGRR RQAAAVVAAA EPEGPEEAEV PAGRLPPYVP PAGEYMQPIW PTWCSIM // ID E1ZJV8_CHLVA Unreviewed; 358 AA. AC E1ZJV8; DT 30-NOV-2010, integrated into UniProtKB/TrEMBL. DT 30-NOV-2010, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFN53928.1}; GN ORFNames=CHLNCDRAFT_53437 {ECO:0000313|EMBL:EFN53928.1}; OS Chlorella variabilis (Green alga). OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Chlorellaceae; Chlorella. OX NCBI_TaxID=554065 {ECO:0000313|Proteomes:UP000008141}; RN [1] {ECO:0000313|EMBL:EFN53928.1, ECO:0000313|Proteomes:UP000008141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=NC64A {ECO:0000313|EMBL:EFN53928.1, RC ECO:0000313|Proteomes:UP000008141}; RX PubMed=20852019; DOI=10.1105/tpc.110.076406; RA Blanc G., Duncan G., Agarkova I., Borodovsky M., Gurnon J., Kuo A., RA Lindquist E., Lucas S., Pangilinan J., Polle J., Salamov A., Terry A., RA Yamada T., Dunigan D.D., Grigoriev I.V., Claverie J.M., RA Van Etten J.L.; RT "The Chlorella variabilis NC64A genome reveals adaptation to RT photosymbiosis, coevolution with viruses, and cryptic sex."; RL Plant Cell 22:2943-2955(2010). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL433849; EFN53928.1; -; Genomic_DNA. DR RefSeq; XP_005846030.1; XM_005845968.1. DR GeneID; 17353493; -. DR KEGG; cvr:CHLNCDRAFT_53437; -. DR InParanoid; E1ZJV8; -. DR OMA; KHTNESA; -. DR Proteomes; UP000008141; Unassembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008141}; KW Reference proteome {ECO:0000313|Proteomes:UP000008141}. FT DOMAIN 25 123 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 358 AA; 37266 MW; C3AE7161B0BA6396 CRC64; MAGAAKHTNE SARAALQAMG GSILFEKVLT SSDVNGTGRL VIPKSQAEAH FPFLEQQQGM VMSLTDTEGN QHSFRFRFWV NNQSRMYLLE NTIEVQAQYK MVAGDVLVFA KLPDGTYAIC GRKGTKDDVS RKPAVRRSKD DASPGEGKGA KRARARGGGA DSAKHKRARQ KQAAQAIQSM FTYWSGYSLP MRKDGVFRAV PNSAAQEGDK VLAQCGAWSA IVSVGGELFQ AFFDTLDAAN AALEAALQSK AEEAAPTPSG AETPAGAAAG GSAPASRGPS EEPPPAAGGP ALALAPGVPG AAAAEAAASE GAAAGAAPAD GVPQPQQEQQ EQEQQQQQQA REPAVEQAEQ QPVLPLLS // ID E1ZMV1_CHLVA Unreviewed; 151 AA. AC E1ZMV1; DT 30-NOV-2010, integrated into UniProtKB/TrEMBL. DT 30-NOV-2010, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFN52754.1}; GN ORFNames=CHLNCDRAFT_138351 {ECO:0000313|EMBL:EFN52754.1}; OS Chlorella variabilis (Green alga). OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Chlorellaceae; Chlorella. OX NCBI_TaxID=554065 {ECO:0000313|Proteomes:UP000008141}; RN [1] {ECO:0000313|EMBL:EFN52754.1, ECO:0000313|Proteomes:UP000008141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=NC64A {ECO:0000313|EMBL:EFN52754.1, RC ECO:0000313|Proteomes:UP000008141}; RX PubMed=20852019; DOI=10.1105/tpc.110.076406; RA Blanc G., Duncan G., Agarkova I., Borodovsky M., Gurnon J., Kuo A., RA Lindquist E., Lucas S., Pangilinan J., Polle J., Salamov A., Terry A., RA Yamada T., Dunigan D.D., Grigoriev I.V., Claverie J.M., RA Van Etten J.L.; RT "The Chlorella variabilis NC64A genome reveals adaptation to RT photosymbiosis, coevolution with viruses, and cryptic sex."; RL Plant Cell 22:2943-2955(2010). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL433854; EFN52754.1; -; Genomic_DNA. DR RefSeq; XP_005844856.1; XM_005844794.1. DR GeneID; 17352251; -. DR KEGG; cvr:CHLNCDRAFT_138351; -. DR InParanoid; E1ZMV1; -. DR Proteomes; UP000008141; Unassembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008141}; KW Reference proteome {ECO:0000313|Proteomes:UP000008141}. FT DOMAIN 37 117 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 151 AA; 16565 MW; 9D89C385F319CBFA CRC64; MPPTRDEVDA QLEELGARRL FEKVLSATDV RGGAVPGDRV VMPKRNTETH LPELESQAGV VLDVEDLEGQ RYRLRLTYWT NSPSSGRMYI LEGTSQLLQH YRLRTGDALV VARTGDGGLL MAGQRKQASR AGATCSRADC INKLGLALTL L // ID E1ZNC9_CHLVA Unreviewed; 1484 AA. AC E1ZNC9; DT 30-NOV-2010, integrated into UniProtKB/TrEMBL. DT 30-NOV-2010, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFN52584.1}; GN ORFNames=CHLNCDRAFT_138597 {ECO:0000313|EMBL:EFN52584.1}; OS Chlorella variabilis (Green alga). OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; OC Chlorellaceae; Chlorella. OX NCBI_TaxID=554065 {ECO:0000313|Proteomes:UP000008141}; RN [1] {ECO:0000313|EMBL:EFN52584.1, ECO:0000313|Proteomes:UP000008141} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=NC64A {ECO:0000313|EMBL:EFN52584.1, RC ECO:0000313|Proteomes:UP000008141}; RX PubMed=20852019; DOI=10.1105/tpc.110.076406; RA Blanc G., Duncan G., Agarkova I., Borodovsky M., Gurnon J., Kuo A., RA Lindquist E., Lucas S., Pangilinan J., Polle J., Salamov A., Terry A., RA Yamada T., Dunigan D.D., Grigoriev I.V., Claverie J.M., RA Van Etten J.L.; RT "The Chlorella variabilis NC64A genome reveals adaptation to RT photosymbiosis, coevolution with viruses, and cryptic sex."; RL Plant Cell 22:2943-2955(2010). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; GL433855; EFN52584.1; -; Genomic_DNA. DR RefSeq; XP_005844686.1; XM_005844624.1. DR ProteinModelPortal; E1ZNC9; -. DR GeneID; 17352028; -. DR KEGG; cvr:CHLNCDRAFT_138597; -. DR InParanoid; E1ZNC9; -. DR Proteomes; UP000008141; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR Gene3D; 3.50.50.60; -; 1. DR InterPro; IPR002937; Amino_oxidase. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR Pfam; PF01593; Amino_oxidase; 2. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF51905; SSF51905; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008141}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000008141}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}. FT DOMAIN 9 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 1128 1151 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1484 AA; 158593 MW; E2D0C36430DF728D CRC64; MAGGDELEYT KVLSESYVSR NAPLGFPARF HRVWFTETTD VLLKNEAGEA WEGRVTKKAA DEKKPDSCNI TGGWGIFVKA NGLQEGDEVK FQHQPATSSS KAAIRITVLS RGNTNEAAAK RQAAKRQAAQ LGKPGRKPAS PAAARTPGRK RPRQEARPPE HPAQQQAAQP RRGPGTAAAA AAALAARAAA AVAAEQPPTL AAGEREYIRH SRQQPEQQQQ QQGVEEAAAW QAAEQEAAGR EQQEEEAVLQ EEQPAEQQVK SPYSGCYDLP PGESSDDAAD APAAPQAAAR APAAAAAAVP SRGEEAERGA KRQRPAAAAA AGVVAAAAAS VQPLEAASHQ AERDAGAGGS GGEEGDPREG GLAAGAPKLT AGALVGRTVL LRCPAGPALH SRREWVAGRV LEPVGSRPGM LVVQLVGANS QQQQHQEGEE QQQQQQQQQE EGQPAAAAPA GGIEELSFFN PSDVAAQLPE GLIGWTVRKH FPGFGPRKWI GKVDGFVAEC QLYHITYEDG DGEEAELHEL LPVLRGPHRA QNGARLAPAG APSRPAAGGK KRGRPPKQAP PGEPQAAAAA VAAAGRGRRV AAAAGADAAA GGAAWVQVEA TPVAIAEAEE GGFYAAGGAG HDRHVLAFDR EAGMARPVGP WIVDRHKGTV LGRAARLDKR HLPDRQLPDG GEEGRAYRSP CVPGWLGVSI VESDEEQVWH PGYKGQYHPV FWDSHCAVKH KVPSAYTETV EEAALLYDRM ALSYFGSGAD TNFPPTEELL AELGGQEEGA RSQVIPLAAR LLFMEQSIPD EAIATDVSQE EWDEWESYIQ DNHLLRRPAA DAPRQLAARL KWLLQQASAA GLPGPLGTPL VHPSALLPPY RGAAMRRFMA ACDACTEVGT NKDHYAPDAA HCFACASTVK KGGGASFRHS CNKLSALIRE LEVAVISQDA LSSFASGEGE EEAAAAADDE QQGLDAKLRL WRTGCPDGGQ SDDAREQAAD ARRQRQRGQA GGAALPRRGA RGGRGGRGAA VRQEKPVPPG APRVIVIGGG VAGLKAAADL QRSGAQVTVL EARDRLGGRI HTHQLVAGEV RRPVDLGATF ICGTSRRPPV NPMLEFAVDV LGLSLRPKRR DGPAATTLYD KQGLPIPDEQ LEEAEEKYAE LMEQLLDRGE KARAGSTETL ANAIRSILED LQLEAMERQI VEAYLVDLYV TTTDRMSLKG SVSSGYDGDH ELVVGGFGQE EPLWAHAVVC TLPLGCLQKQ TVAFQPPLPA YKQQAIDGLG MGTENRVAML FEEVFWPEGP HFLRPLHGRY TFSNLHALGV ENVLCAWVRP QDIDAYEAMS DGEVLADVEA ALREMFPNTF RKPMAHTITR WQQDPYCYGA YSFVPPHGRK AYYEWMSYPV SGDAAADAKA VEQRGLHVTA QTRLWFAGEA SSKDDAYTAH GAFVTGHHQA IRIKRWWRHH HEQLERSQRE AAAAGAAAAQ ARQLASPLRR RRGGCVEAGG ASQQ // ID E2GMX5_BRANA Unreviewed; 349 AA. AC E2GMX5; DT 30-NOV-2010, integrated into UniProtKB/TrEMBL. DT 30-NOV-2010, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=BnaA07g08500D protein {ECO:0000313|EMBL:CDY15679.1}; DE SubName: Full=Leafy cotyledon 2 {ECO:0000313|EMBL:ADO16343.1}; GN Name=BnaA07g08500D {ECO:0000313|EMBL:CDY15679.1}; GN ORFNames=GSBRNA2T00089892001 {ECO:0000313|EMBL:CDY15679.1}; OS Brassica napus (Rape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=3708 {ECO:0000313|EMBL:ADO16343.1}; RN [1] {ECO:0000313|EMBL:ADO16343.1} RP NUCLEOTIDE SEQUENCE. RA Slater S.M.H., Tahir M.; RL Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:CDY15679.1, ECO:0000313|Proteomes:UP000028999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999}; RX PubMed=25146293; DOI=10.1126/science.1253435; RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., RA Chiquet J., Belcram H., Tong C., Samans B., Correa M., Da Silva C., RA Just J., Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., RA Noel B., Labadie K., Alberti A., Charles M., Arnaud D., Guo H., RA Daviaud C., Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., RA Tack D., Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., RA Renault V., Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., RA Chalabi S., Hu Q., Fan C., Tollenaere R., Lu Y., Battail C., Shen J., RA Sidebottom C.H., Wang X., Canaguier A., Chauveau A., Berard A., RA Deniot G., Guan M., Liu Z., Sun F., Lim Y.P., Lyons E., Town C.D., RA Bancroft I., Wang X., Meng J., Ma J., Pires J.C., King G.J., RA Brunel D., Delourme R., Renard M., Aury J.M., Adams K.L., Batley J., RA Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W., Sharpe A.G., RA Paterson A.H., Guan C., Wincker P.; RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic RT Brassica napus oilseed genome."; RL Science 345:950-953(2014). RN [3] {ECO:0000313|EMBL:CDY15679.1} RP NUCLEOTIDE SEQUENCE. RA Genoscope - CEA; RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HM370539; ADO16343.1; -; mRNA. DR EMBL; LK032056; CDY15679.1; -; Genomic_DNA. DR RefSeq; NP_001302874.1; NM_001315945.1. DR UniGene; Bna.10484; -. DR EnsemblPlants; CDY15679; CDY15679; GSBRNA2T00089892001. DR GeneID; 106356333; -. DR Gramene; CDY15679; CDY15679; GSBRNA2T00089892001. DR KEGG; bna:106356333; -. DR Proteomes; UP000028999; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000028999}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000028999}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 165 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 40042 MW; B8FE2CB7CC1E7F60 CRC64; MDNFLPFSSS NANSVQELSM DLNKNRSHFS MAQPQHLLPP YSYVACPALD QTGTMNHQPL HSSDAFPQIP VVQTGGEFGY LVCKPGVRQE RGGFLDPHST KMARINRKKA MLRSRNNSNP NSSSNELVDS RRQVALTMKN NAEIAARKDF YRFSSFDNKK LRVLLVKHLK NSDVGSLGRI VLPKREAEGN LPELSDKEGM VLEMRDVDSV QSWSFKYKYW SNNKSRMYVL ENTGEFVKKN GVLMGDYLTI YEDESKNLYF SIRKHPHKQN DGREDESMEV IEMNFYEDIM FDYIPNDEDD SIAMLLGNLN EHYPYPNDLM DLTVNLDQHQ QATSSSPPAD HMSSNDFLW // ID F2DDS1_HORVV Unreviewed; 348 AA. AC F2DDS1; DT 31-MAY-2011, integrated into UniProtKB/TrEMBL. DT 31-MAY-2011, sequence version 1. DT 07-JUN-2017, entry version 41. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ93242.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509; RN [1] {ECO:0000313|EMBL:BAJ93242.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Shoot and root {ECO:0000313|EMBL:BAJ93242.1}; RX PubMed=21415278; DOI=10.1104/pp.110.171579; RA Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamori H., Kurita K., RA Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K., RA Itoh T., Sato K.; RT "Comprehensive sequence analysis of 24,783 barley full-length cDNAs RT derived from 12 clone libraries."; RL Plant Physiol. 156:20-28(2011). RN [2] {ECO:0000313|EnsemblPlants:MLOC_56567.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_56567.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [3] {ECO:0000313|EnsemblPlants:MLOC_56567.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_56567.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AK362038; BAJ93242.1; -; mRNA. DR EnsemblPlants; MLOC_56567.1; MLOC_56567.1; MLOC_56567. DR Gramene; MLOC_56567.1; MLOC_56567.1; MLOC_56567. DR OMA; RCSKKQA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 111 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 169 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 111 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 169 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 38249 MW; 624F44EE33CC4C50 CRC64; MGVEILSSMV EHSFQYSSGA SSATAESGAV GTPPRHLSLP VAIADESLTS RSASSRFKGV VPQPNGRWGA QIYERHARVW LGTFPDQDSA ARAYDVASLR YRGGDAAFNF PCVVVEAELA FLAAHSKAEI VDMLRKQTYA DELRQGLRRG RGMGVRAQPM PSWARVPLFE KAVTPSDVGK LNRLVVPKQH AEKHFPLKRS PETTTTTGNG VLLNFEDGQG KVWRFRYSYW NSSQSYVLTK GWSRFVREKG LGAGDSIMFS CSAYGQEKQF FIDCKKNTTV NGGKSASPLQ VMEIAKAEQV RVVRLFGVDI AGVKRERAAT AEQGPQGWFK RQCMAHGQHS PALGDFAL // ID F2DHK7_HORVV Unreviewed; 353 AA. AC F2DHK7; DT 31-MAY-2011, integrated into UniProtKB/TrEMBL. DT 31-MAY-2011, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ94578.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509; RN [1] {ECO:0000313|EMBL:BAJ94578.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Shoot and root {ECO:0000313|EMBL:BAJ94578.1}; RX PubMed=21415278; DOI=10.1104/pp.110.171579; RA Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamori H., Kurita K., RA Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K., RA Itoh T., Sato K.; RT "Comprehensive sequence analysis of 24,783 barley full-length cDNAs RT derived from 12 clone libraries."; RL Plant Physiol. 156:20-28(2011). RN [2] {ECO:0000313|EnsemblPlants:MLOC_75135.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_75135.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [3] {ECO:0000313|EnsemblPlants:MLOC_75135.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_75135.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AK363374; BAJ94578.1; -; mRNA. DR EnsemblPlants; MLOC_75135.2; MLOC_75135.2; MLOC_75135. DR Gramene; MLOC_75135.2; MLOC_75135.2; MLOC_75135. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; F2DHK7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 174 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 174 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 38214 MW; 452670EBA3FEDF31 CRC64; MGMEILSSTV EHCSQYSSSA STATTESGAA GRSTTALSLP VAITDESVTS RSASAQPASS RFKGVVPQPN GRWGSQIYER HARVWLGTFP DQDSAARAYD VASLRYRGRD AATNFPCAAA EAELAFLTAH SKAEIVDMLR KHTYADELRQ GLRRGRGMGA RAQPTPSWAR VPLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLKCTAETTT TTGNGVLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSSF VREKGLGAGD SIVFSSSAYG QEKQLFINCK KNTTMNGGKT ALPLPVVETA KGEQDHVVKL FGVDIAGVKR VRAATGELGP PELFKRQSVA HGQHSPSLGV FAL // ID F2EAN0_HORVV Unreviewed; 527 AA. AC F2EAN0; M0XEU3; DT 31-MAY-2011, integrated into UniProtKB/TrEMBL. DT 31-MAY-2011, sequence version 1. DT 10-MAY-2017, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAK04402.1, ECO:0000313|EnsemblPlants:MLOC_59439.8}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EMBL:BAK04402.1}; RN [1] {ECO:0000313|EMBL:BAK04402.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=21415278; DOI=10.1104/pp.110.171579; RA Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamori H., Kurita K., RA Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K., RA Itoh T., Sato K.; RT "Comprehensive sequence analysis of 24,783 barley full-length cDNAs RT derived from 12 clone libraries."; RL Plant Physiol. 156:20-28(2011). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.8} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.8}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [3] {ECO:0000313|EnsemblPlants:MLOC_59439.8} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.8}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AK373205; BAK04402.1; -; mRNA. DR EnsemblPlants; MLOC_59439.8; MLOC_59439.8; MLOC_59439. DR Gramene; MLOC_59439.8; MLOC_59439.8; MLOC_59439. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; F2EAN0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 462 525 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 462 525 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 527 AA; 59665 MW; 8825F2E8A05B8CC7 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDASGR SYECQSGSSS YSGSTRNTAV MSTPSAESGP PKDKYVLPSR SNLADAQKEK IDRLLQDIQS RTLAFVAIMR KSNVRPLYPS LTITKECAAA HFPHESASVI LQRPGESKKW YPRFCKGNGG SIHKIRGEWS DFVCDNHVEE ADICIFVSTK GGGRFTFTVH LIHSESKAHA CPFVPPYILP KTRFLSPLQK IIVEDKAQAI QLEAHFYVAI MNKINVGVKG HYNLEFGAKY AAVYLPKKEQ TILLQRTGKE WQTQMRIRRG RRRFLEKGWC EFATDNRLQV GDLCLFELKR NRRKLTMIVH IISRDQC // ID F2EEN7_HORVV Unreviewed; 1083 AA. AC F2EEN7; DT 31-MAY-2011, integrated into UniProtKB/TrEMBL. DT 31-MAY-2011, sequence version 1. DT 05-JUL-2017, entry version 45. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509; RN [1] {ECO:0000313|EMBL:BAK05809.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Flower {ECO:0000313|EMBL:BAK05809.1}; RX PubMed=21415278; DOI=10.1104/pp.110.171579; RA Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamori H., Kurita K., RA Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K., RA Itoh T., Sato K.; RT "Comprehensive sequence analysis of 24,783 barley full-length cDNAs RT derived from 12 clone libraries."; RL Plant Physiol. 156:20-28(2011). RN [2] {ECO:0000313|EnsemblPlants:MLOC_14584.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_14584.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [3] {ECO:0000313|EnsemblPlants:MLOC_14584.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_14584.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AK374613; BAK05809.1; -; mRNA. DR STRING; 4513.MLOC_14584.1; -. DR EnsemblPlants; MLOC_14584.1; MLOC_14584.1; MLOC_14584. DR Gramene; MLOC_14584.1; MLOC_14584.1; MLOC_14584. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; F2EEN7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 970 1054 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1083 AA; 120278 MW; 7207A9888660A056 CRC64; MAAPEGSGAG GGEGPRGSRV NQELWYACAG PLVALPPPGS LVVYFPQGHS EQVAASMRKD ADAQIPSYPN LPSKLICILH SVTMQSDPET DEVYARMTLQ PVSNVTQCDK EILLASELAL KQNKPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPRLD FSLQPPAQEL QARDLHDTIW TFRHIFRGQP KRHLLTTGWS LFISGKRLIA GDSVLFIRDA KQQLLLGIRR ANRQPTNLSS SVLSSDSMHI GVLAAAAHAA ANNSQFTIFY NPRASPSEFV IPFAKYQKAV YGNQLSLGMR FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNIQV AWDEAAPSER RTRVSLWDIE PVIAPFFIYP TPLFTAKRAR QPGMIDDDTS GMDNLFKRTM PWLGEEICKK DMNTQNSIVP GLNLAQSVQW MNMQQNLSLA GTVMQPELLN SLAGKHVQNL SAADISRQIS FQPQFLQQNN IQFDTSLLPQ QNQQAEQLAK AIATPNQLEN IMAPQKVDQD CYSDQKQRAV TQTVQGSQAN LNITQPEHVV QAQFEQPQVI LQAQLQQQQP LVQSHTIFQG GLQEIQVLQQ QQQPQHHQQV QHSVQEQQQM KIRPVHVPSD ANMNTQLSSD HQMKLQLLKA LHSQQHLTME QQKMLFDLQQ QVINSQSNPQ QRVQGATQTV GFHNSNTIQY ATQQKAQSHQ PIEGSPGGTI PVAKSDTITS IGASSLNVTS RMQLVRTDNV PSSSTSPSTT TNPVLLHSIP SSSKNQSLPT AAKTSQSSVG LGSTIEQEMK HYQSVKPTIM IPKMIEQGPA TERDYINNPH MDYLDTSSSA TSVCLSQADG SLQQNFPSSS FDQHQLLRDT APDSEFEISD PTNNLLFGVN IDGQLGLPLN ADALLANSIE NDKFMDEMAG NGISNYISSK DSQQELSSSM ISHSLGVADM GFNSIDSATN DPPFLNRNSR APAPAHQRMR TYTKVHKRGA VGRSIDMNRY SGYDELKHDI ARMFGIEGQL GDQSRVGWKL VYEDHEKDVL LVGDDPWEDF LNCVRCIRIL SPQEEMQMRL VGDFGDGFLP NQACSSSDGG QPW // ID F2EG65_HORVV Unreviewed; 299 AA. AC F2EG65; DT 31-MAY-2011, integrated into UniProtKB/TrEMBL. DT 31-MAY-2011, sequence version 1. DT 05-JUL-2017, entry version 44. DE SubName: Full=Predicted protein {ECO:0000313|EMBL:BAK06337.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509; RN [1] {ECO:0000313|EMBL:BAK06337.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Flower {ECO:0000313|EMBL:BAK06337.1}; RX PubMed=21415278; DOI=10.1104/pp.110.171579; RA Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamori H., Kurita K., RA Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K., RA Itoh T., Sato K.; RT "Comprehensive sequence analysis of 24,783 barley full-length cDNAs RT derived from 12 clone libraries."; RL Plant Physiol. 156:20-28(2011). RN [2] {ECO:0000313|EnsemblPlants:MLOC_15725.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_15725.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [3] {ECO:0000313|EnsemblPlants:MLOC_15725.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_15725.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AK375142; BAK06337.1; -; mRNA. DR STRING; 4513.MLOC_15725.3; -. DR EnsemblPlants; MLOC_15725.3; MLOC_15725.3; MLOC_15725. DR Gramene; MLOC_15725.3; MLOC_15725.3; MLOC_15725. DR OMA; SMDMANP; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; F2EG65; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 33411 MW; 8C1FF9CC4B39842A CRC64; MAAISSSKRR SPSASTAASS SSADGIGEPG PQLVTRKRRS VRRGPRGGVR WMPAIRPVSE LDLNRVALDP DHQVPGLRVI LQKELRNSDI SQLGRIVLPK KESEAYLPTL ASKDGRSLRM HDLLNAQEWT FKYRYWPNNN SRMYVLENTG DYVRTHNLRV GDFIMIYKDD DNNRFVIRAK KAGDDLVAAM PQFHEHISGI LPIPEVDDYV SLIPSPADIS AFIPQADENY EIFDGIFNSL PEIPVANVRY SDFFDPFSDC MDASNPSLNG NNSANLASHF HDERTGLSLF PNPKSGPLM // ID F2EGI5_HORVV Unreviewed; 763 AA. AC F2EGI5; DT 31-MAY-2011, integrated into UniProtKB/TrEMBL. DT 31-MAY-2011, sequence version 1. DT 05-JUL-2017, entry version 45. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509; RN [1] {ECO:0000313|EMBL:BAK06457.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Flower {ECO:0000313|EMBL:BAK06457.1}; RX PubMed=21415278; DOI=10.1104/pp.110.171579; RA Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamori H., Kurita K., RA Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K., RA Itoh T., Sato K.; RT "Comprehensive sequence analysis of 24,783 barley full-length cDNAs RT derived from 12 clone libraries."; RL Plant Physiol. 156:20-28(2011). RN [2] {ECO:0000313|EnsemblPlants:MLOC_65945.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_65945.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [3] {ECO:0000313|EnsemblPlants:MLOC_65945.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_65945.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AK375262; BAK06457.1; -; mRNA. DR STRING; 4513.MLOC_65945.1; -. DR EnsemblPlants; MLOC_65945.1; MLOC_65945.1; MLOC_65945. DR Gramene; MLOC_65945.1; MLOC_65945.1; MLOC_65945. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; F2EGI5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 177 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 659 739 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 177 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 763 AA; 84309 MW; 853175057E757A4B CRC64; MGRAQQQTLT QGEHHPVPRP DQLLPPPSLS PRPHSSFPPG EDRTAEPVHH QPTATRVAMA QPGRGRDPEL FAELWRACAG PLVEVPQRGE RVFYFLQGHL EQLQEPTDSA LLAEQIKMFQ VPYKILCKVV NVELKAETET DEVYAQITLQ PDADQSDLPL ILDPTLPETP RPVVHTFCKI LTPSDTSTHG GFSVLRRHAN ECLPPLDMTM PTPTQEIISK DLHGSEWRFK HIYRGQPRRH LLTTGWSTFV TSKKLMAGDA FVYLRSETGE QRVGVRRLVQ KQSTMPASVI SSQSMHLGVL ASASHAIKTN SIFVVYYRPR LSQSQYIVSV NKYHLASKTG FTVGMRFRMN FEAEDVPVKK FFGTIVGDGD FSPQWSGSEW KSLKVQWDDS VAICNGPERV SPWEIDSSDV SSPAISTLLQ SSAKNKRPRE TNENMNLPSQ EPTQEFWLSG VTQQHERTYV GSSDPNRISG SGYHQILWPS EHAGYGAMSS SSVCQTPLGL GDGWFKDFNT SSQGVSPTLS EITQKLNRVA SSEGRAPPPW ATALCGGYRA EEPTSKLSCN ATLPLPSPLT EQVAPYLLKV AEKVKGPGMV RLFGVNLMEN TNNAAAATAG NASVGAGETS ARITGSVEGS GQLSAFSKVT KVVNESPREI QSQQSSIGRN RVKVQMHGNA VGRAVDLASL DGYERLTNEL EQMFEIKDIK QNFKVAFNDN EGDTMKVGDD PWMEFCRMVR KIVIYPIEDD KNMDPHQTSV FAAAPDEDLK ANL // ID F4HT52_ARATH Unreviewed; 546 AA. AC F4HT52; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 28-JUN-2011, sequence version 1. DT 05-JUL-2017, entry version 53. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF13 {ECO:0000313|EMBL:AEE31681.1}; GN Synonyms=AUXIN RESPONSE FACTOR 13 {ECO:0000313|EMBL:AEE31681.1}; GN OrderedLocusNames=At1g34170 {ECO:0000313|Araport:AT1G34170, GN ECO:0000313|EMBL:AEE31681.1}; GN ORFNames=F12G12.1 {ECO:0000313|EMBL:AEE31681.1}, GN F12G12_1 {ECO:0000313|EMBL:AEE31681.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE31681.1, ECO:0000313|Proteomes:UP000006548}; RN [1] {ECO:0000313|EMBL:AEE31681.1, ECO:0000313|Proteomes:UP000006548} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., RA Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., RA Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., RA Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., RA Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., RA Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., RA Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., RA Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] {ECO:0000313|EMBL:AEE31681.1, ECO:0000313|Proteomes:UP000006548} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP002684; AEE31681.1; -; Genomic_DNA. DR RefSeq; NP_001154393.1; NM_001160921.1. DR UniGene; At.51184; -. DR ProteinModelPortal; F4HT52; -. DR SMR; F4HT52; -. DR STRING; 3702.AT1G34170.3; -. DR PaxDb; F4HT52; -. DR EnsemblPlants; AT1G34170.3; AT1G34170.3; AT1G34170. DR GeneID; 840316; -. DR Gramene; AT1G34170.3; AT1G34170.3; AT1G34170. DR Araport; AT1G34170; -. DR TAIR; locus:2008991; AT1G34170. DR OMA; CPPEVEI; -. DR OrthoDB; EOG093613U0; -. DR Proteomes; UP000006548; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006548}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006548}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 433 525 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 546 AA; 62370 MW; 4E3FB1A34479BDFB CRC64; MENNGEMNAQ PELSVDITKT YMYEKLWNIC AGPLCVLPKP GEKVYYFPQG HIELIENSTR DELDHIRPIF DLPSKLRCRV VAIDRKVDKN TDEVYAQISL MPDTTEVMTH NTTMDTRRPI VYFFSKILTA SDVSLSGGLI IPKQYAIECF PPLDMSQPIS TQNLVAKDLY GQEWSFKHVF RGTPQRHMFT SGGGWSVFAT TKRLIVGDIF VLLRGENGEL RFGIRRAKHQ QGHIPSSVIS ANCMQHGVIA SVVNAFKTKC MFNVVYKPRM QFEGKDFSEK RYDGTIIGVN DMSPHWKDSE WRSLKVQWDE LSPFLRPNQV SPWDIEHLIP SSDISQSSLK KKKHWLQLNE IGATLSNLWT CQEIGQRSMN SPISVPEFSY PNAIEDSKFL SGLLLNHSLL AIPNENYNSD QMIQPRKEDI TTEATTSCLL FGVDLTKVHM QGVAISRAVD LTAMHGYNQL IQKLEELFDL KDELRTRNQW EIVFTNNEGA EMLVGDDPWP EFCNMAKRIF ICSKEEIKKM KLKNKFFQPE SKALTSSDVP PNVTDN // ID F4ID31_ARATH Unreviewed; 660 AA. AC F4ID31; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 28-JUN-2011, sequence version 1. DT 05-JUL-2017, entry version 51. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF1 {ECO:0000313|EMBL:AEE33615.1}; GN Synonyms=auxin response factor 1 {ECO:0000313|EMBL:AEE33615.1}; GN OrderedLocusNames=At1g59750 {ECO:0000313|Araport:AT1G59750, GN ECO:0000313|EMBL:AEE33615.1}; GN ORFNames=F23H11.7 {ECO:0000313|EMBL:AEE33615.1}, GN F23H11_7 {ECO:0000313|EMBL:AEE33615.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE33615.1, ECO:0000313|Proteomes:UP000006548}; RN [1] {ECO:0000313|EMBL:AEE33615.1, ECO:0000313|Proteomes:UP000006548} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., RA Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., RA Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., RA Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., RA Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., RA Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., RA Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., RA Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] {ECO:0000313|EMBL:AEE33615.1, ECO:0000313|Proteomes:UP000006548} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP002684; AEE33615.1; -; Genomic_DNA. DR RefSeq; NP_001185266.1; NM_001198337.1. DR UniGene; At.74832; -. DR ProteinModelPortal; F4ID31; -. DR SMR; F4ID31; -. DR PaxDb; F4ID31; -. DR EnsemblPlants; AT1G59750.4; AT1G59750.4; AT1G59750. DR GeneID; 842268; -. DR Gramene; AT1G59750.4; AT1G59750.4; AT1G59750. DR Araport; AT1G59750; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; F4ID31; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006548}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006548}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 537 630 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 660 AA; 73216 MW; 20A300B874B02C68 CRC64; MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR // ID F4IPS6_ARATH Unreviewed; 615 AA. AC F4IPS6; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 12-APR-2017, sequence version 2. DT 05-JUL-2017, entry version 47. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:AEC07613.2}; GN OrderedLocusNames=At2g24680 {ECO:0000313|Araport:AT2G24680, GN ECO:0000313|EMBL:AEC07613.2}; GN ORFNames=F25P17.2 {ECO:0000313|EMBL:AEC07613.2}, GN F25P17_2 {ECO:0000313|EMBL:AEC07613.2}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEC07613.2, ECO:0000313|Proteomes:UP000006548}; RN [1] {ECO:0000313|EMBL:AEC07613.2, ECO:0000313|Proteomes:UP000006548} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S., Shea T.P., Benito M.I., Town C.D., RA Fujii C.Y., Mason T., Bowman C.L., Barnstead M., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J., Ronning C.M., Koo H.L., Moffat K.S., RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] {ECO:0000313|EMBL:AEC07613.2, ECO:0000313|Proteomes:UP000006548} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP002685; AEC07613.2; -; Genomic_DNA. DR RefSeq; NP_001318284.1; NM_001335951.1. DR UniGene; At.50094; -. DR ProteinModelPortal; F4IPS6; -. DR SMR; F4IPS6; -. DR PaxDb; F4IPS6; -. DR GeneID; 817004; -. DR Araport; AT2G24680; -. DR TAIR; locus:2046633; AT2G24680. DR OMA; WERSWAM; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006548; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006548}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006548}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 193 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 337 433 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 485 579 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 193 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 337 433 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 485 579 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 615 AA; 69463 MW; F6A8A85256E016CA CRC64; MVLNSSDLGP SRCDIRDLPA PSSTNDQGKT ELARKKKVKR SNTEIEADAS SSDNSCFVAL VTASNLRKDA LYLPQDLTSS VGLERKYREI VVTDERERRS WALDLRFNKS SDTFYISRGW RSFCDENGKK PGGVFVFKLV GNRETPVLSF CSTESINDGT QGHKNNKYNC MELKSKKKRM RCRDSTSPSQ NRFMTLTLTH DNLIKSRRQL PLPFMRENGL VKPGIINLLG KDGTKWEVNL RREANGTMYL GKGWKDFTIA NGLKTGESFT LEAVLENGTR MLSLVSTQST SDRNQQGECL KDSEKESNST EPSSGKRKAM INRGVRRKSF PASQNRCVTL KLTHDNLIKS RRYLPLSFTR DNGLDKPGMI FLLGKTGRKW EANLLREASG RIVLTGKGWK EFAMANGLKS GELFTLEAIL EKGTPMLSLV NTQSTNYRSQ QGECSRDSEK ESSICAEPSR GNKKWKATNN RKERRDSSSA IQNRYVTLTL TPEDVRACTL ILPSQFMKAN GINKLGKKTL LGQNRKKWFA YLLSKSGFVA LGSGWKGFCE ANGVKTGESF NLEYIDEQDT TPVFKFCSNS VEISWHREER ERNRVYHRRG KTIGEYLCFP LEGNL // ID REML2_ARATH Reviewed; 375 AA. AC F4IQL7; Q9SHV3; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 28-JUN-2011, sequence version 1. DT 12-APR-2017, entry version 33. DE RecName: Full=B3 domain-containing protein REM-like 2; DE AltName: Full=Protein REPRODUCTIVE MERISTEM-like 2; GN OrderedLocusNames=At2g24696; ORFNames=F27A10.1; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD26893.1; Type=Erroneous gene model prediction; Note=The predicted gene At2g24700 has been split into 2 genes: At2g24696 and At2g24700.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007266; AAD26893.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC07619.1; -; Genomic_DNA. DR RefSeq; NP_001154532.1; NM_001161060.1. DR UniGene; At.74681; -. DR ProteinModelPortal; F4IQL7; -. DR STRING; 3702.AT2G24696.1; -. DR PaxDb; F4IQL7; -. DR EnsemblPlants; AT2G24696.1; AT2G24696.1; AT2G24696. DR GeneID; 3768436; -. DR Gramene; AT2G24696.1; AT2G24696.1; AT2G24696. DR KEGG; ath:AT2G24696; -. DR Araport; AT2G24696; -. DR TAIR; locus:1006230049; AT2G24696. DR OMA; NTEEMIN; -. DR OrthoDB; EOG09360BFM; -. DR PRO; PR:F4IQL7; -. DR Proteomes; UP000006548; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 375 B3 domain-containing protein REM-like 2. FT /FTId=PRO_0000412839. FT DNA_BIND 51 147 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 131 226 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 277 375 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 42838 MW; 7D6944FBFE1965EF CRC64; MLFNVSACDI RDKPMPSNND INKIDQLERV KKVRKNSSQS EAGSSSSGNS SFVALVKASN LKEDALYLPQ DCTSSNGLNK KCRKIFLTDG GDRSWEMDLK FDKNLDSFCI TRGWRHFCDE NGKKLPNQER FVTVRLVPDC LRNKRLYLSR RFLKNNGLGE PKMVTLVGTD GTRILANLLR ESTGRMSLGR GWVDFAKANR LKIGEYFTLE SIWENDSPIL SLYGTNTSKS DKRKRRENFP VACEKEYVST EARNRNEPEK DKNTEEMINQ ASLSENRLVI TLVPEDVKAG MLRLPSHFMK ANGIDKVGKI YMLGINEMEW WWGDLLTRDG IVSVGCGWRY FCESNGVKIG KSFTLECMYK YDTRPVFKFC PKSGK // ID F4J9Q0_ARATH Unreviewed; 374 AA. AC F4J9Q0; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 28-JUN-2011, sequence version 1. DT 05-JUL-2017, entry version 47. DE SubName: Full=AP2/B3-like transcriptional factor family protein {ECO:0000313|EMBL:AEE74355.1}; GN OrderedLocusNames=At3g06160 {ECO:0000313|Araport:AT3G06160, GN ECO:0000313|EMBL:AEE74355.1}; GN ORFNames=F28L1.10 {ECO:0000313|EMBL:AEE74355.1}, GN F28L1_10 {ECO:0000313|EMBL:AEE74355.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE74355.1, ECO:0000313|Proteomes:UP000006548}; RN [1] {ECO:0000313|EMBL:AEE74355.1, ECO:0000313|Proteomes:UP000006548} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RX PubMed=11130713; DOI=10.1038/35048706; RG European Union Chromosome 3 Arabidopsis Sequencing Consortium; RG Institute for Genomic Research; RG Kazusa DNA Research Institute; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., RA Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., RA Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., RA Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., RA Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M., RA Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C., RA Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M., RA Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., RA Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A., RA flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., RA Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D., RA Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., RA Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., RA Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., RA Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., RA Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., RA Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., RA Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., RA Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [2] {ECO:0000313|EMBL:AEE74355.1, ECO:0000313|Proteomes:UP000006548} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RA Lavstsen T., Jespersen J.S.; RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP002686; AEE74355.1; -; Genomic_DNA. DR RefSeq; NP_001189823.1; NM_001202894.2. DR UniGene; At.53200; -. DR ProteinModelPortal; F4J9Q0; -. DR SMR; F4J9Q0; -. DR STRING; 3702.AT3G06160.2; -. DR PaxDb; F4J9Q0; -. DR EnsemblPlants; AT3G06160.2; AT3G06160.2; AT3G06160. DR GeneID; 819790; -. DR Gramene; AT3G06160.2; AT3G06160.2; AT3G06160. DR Araport; AT3G06160; -. DR TAIR; locus:2082405; AT3G06160. DR OMA; RGDCKET; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; F4J9Q0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006548}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006548}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 160 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 160 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 374 AA; 42661 MW; 3F5ED18CC718999A CRC64; MWATKSRRCA VKKQCCFLSL VVHRARTEKN RIQSLEIFFL KIKENRLDQI SLPLVHTSSM ASGDVLPRFF TVFLSHCSSE SMVIPRSYYN LLPRPLPKTA ILIGTGGRFW KVAMTSKQEQ VYFEQGWGNF VADNQLKEGE FLTFVFDGHK SYEVSIYGRG DCKETRAVIQ VEEISDDTED DNVSLHSPSN VSLDSLSNDS HHSTSNVSLR SLSNDSLHGD AEIESDSEYS PENLPSASIS VESVEVVNPT TSRQRSYKRK TIENPHLYLD DPNNVCFETC LKLRKFELLV HAQLVKDYGL IFSDNVDYID GYGKLTAKTT KWADQRVCIN KWQKICERNQ FTENDSILCE ILRNEDKVVY AIKIHIFRDA AAST // ID F4JWT6_ARATH Unreviewed; 324 AA. AC F4JWT6; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 28-JUN-2011, sequence version 1. DT 07-JUN-2017, entry version 47. DE SubName: Full=AP2/B3-like transcriptional factor family protein {ECO:0000313|EMBL:AED93452.1}; GN OrderedLocusNames=At5g25475 {ECO:0000313|Araport:AT5G25475, GN ECO:0000313|EMBL:AED93452.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AED93452.1, ECO:0000313|Proteomes:UP000006548}; RN [1] {ECO:0000313|EMBL:AED93452.1, ECO:0000313|Proteomes:UP000006548} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RX PubMed=11130714; DOI=10.1038/35048507; RG Kazusa DNA Research Institute; RG Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; RG European Union Arabidopsis Genome Sequencing Consortium; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T., RA Entian K.D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.A., RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Lankhorst R.K., Weitzenegger T., Bothe G., Rose M., RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., RA Mayer K., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.W., RA Bevan M., Fransz P.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [2] {ECO:0000313|EMBL:AED93452.1, ECO:0000313|Proteomes:UP000006548} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP002688; AED93452.1; -; Genomic_DNA. DR RefSeq; NP_001190395.1; NM_001203466.1. DR UniGene; At.30907; -. DR ProteinModelPortal; F4JWT6; -. DR STRING; 3702.AT5G25475.4; -. DR PaxDb; F4JWT6; -. DR EnsemblPlants; AT5G25475.4; AT5G25475.4; AT5G25475. DR GeneID; 832622; -. DR Gramene; AT5G25475.4; AT5G25475.4; AT5G25475. DR Araport; AT5G25475; -. DR TAIR; locus:505006638; AT5G25475. DR OMA; IEEDWNE; -. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; F4JWT6; baseline and differential. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006548}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006548}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 53 75 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 62 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 37206 MW; 5DF5E8B2AB7D0C88 CRC64; MLPKNAIEKI QANVSKPCFW KSLSPGQTWK SKSMLPLWVL LRRRFRLPLA HKVITFSLMF PLLNVSIVLL ISGFIKRIIP EDFVRRTRGA FEHRVVFSVR WENSWQLWLE REKNELFMIE EDWNEFVDDN HLGPNDNLFI KHDETMNLEV QIFKNNGVEI IDVPLGVEPE TEPFHPTPKK PHKETTPASS FASGSGCSAN GGTNGRGKQR SSDVKNPERY LLNPENPYFV QAVTKRNDVL YVSRPVVQSY RLKFGPVKST ITYLLPGEKK EEGENRIYNG KPCFSGWSVL CRRHNLNIGD SVVCELERSG GVVTAVRVHF VKKD // ID F4K536_ARATH Unreviewed; 853 AA. AC F4K536; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 28-JUN-2011, sequence version 1. DT 05-JUL-2017, entry version 51. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF2 {ECO:0000313|EMBL:AED97551.1}; GN Synonyms=ARF1-BINDING PROTEIN {ECO:0000313|EMBL:AED97551.1}, GN ARF1-BP {ECO:0000313|EMBL:AED97551.1}, GN AtARF2 {ECO:0000313|EMBL:AED97551.1}, GN auxin response factor 2 {ECO:0000313|EMBL:AED97551.1}, GN HLS1 SUPPRESSOR {ECO:0000313|EMBL:AED97551.1}, GN HSS {ECO:0000313|EMBL:AED97551.1}, GN MTG10.1 {ECO:0000313|EMBL:AED97551.1}, GN MTG10_1 {ECO:0000313|EMBL:AED97551.1}, GN ORE14 {ECO:0000313|EMBL:AED97551.1}, GN ORESARA 14 {ECO:0000313|EMBL:AED97551.1}; GN OrderedLocusNames=At5g62000 {ECO:0000313|Araport:AT5G62000, GN ECO:0000313|EMBL:AED97551.1}, At5g62010 {ECO:0000313|EMBL:AED97551.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AED97551.1, ECO:0000313|Proteomes:UP000006548}; RN [1] {ECO:0000313|EMBL:AED97551.1, ECO:0000313|Proteomes:UP000006548} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RX PubMed=11130714; DOI=10.1038/35048507; RG Kazusa DNA Research Institute; RG Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; RG European Union Arabidopsis Genome Sequencing Consortium; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T., RA Entian K.D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.A., RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Lankhorst R.K., Weitzenegger T., Bothe G., Rose M., RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., RA Mayer K., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.W., RA Bevan M., Fransz P.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [2] {ECO:0000313|EMBL:AED97551.1, ECO:0000313|Proteomes:UP000006548} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP002688; AED97551.1; -; Genomic_DNA. DR RefSeq; NP_001190591.1; NM_001203662.1. DR UniGene; At.21704; -. DR ProteinModelPortal; F4K536; -. DR SMR; F4K536; -. DR PaxDb; F4K536; -. DR EnsemblPlants; AT5G62000.4; AT5G62000.4; AT5G62000. DR GeneID; 836321; -. DR Gramene; AT5G62000.4; AT5G62000.4; AT5G62000. DR Araport; AT5G62000; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; F4K536; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006548}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006548}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 733 817 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 853 AA; 95385 MW; D4B04F1C44FBB9E0 CRC64; MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVDGGRL VETGEQNGMM GLR // ID F4K5M5_ARATH Unreviewed; 1150 AA. AC F4K5M5; DT 28-JUN-2011, integrated into UniProtKB/TrEMBL. DT 28-JUN-2011, sequence version 1. DT 05-JUL-2017, entry version 50. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=NPH4 {ECO:0000313|EMBL:AED92886.1}; GN Synonyms=ARF7 {ECO:0000313|EMBL:AED92886.1}, GN AUXIN RESPONSE FACTOR 7 {ECO:0000313|EMBL:AED92886.1}, GN BIP {ECO:0000313|EMBL:AED92886.1}, GN BIPOSTO {ECO:0000313|EMBL:AED92886.1}, GN IAA21 {ECO:0000313|EMBL:AED92886.1}, GN IAA23 {ECO:0000313|EMBL:AED92886.1}, GN IAA25 {ECO:0000313|EMBL:AED92886.1}, GN MASSUGU 1 {ECO:0000313|EMBL:AED92886.1}, GN MSG1 {ECO:0000313|EMBL:AED92886.1}, GN NON-PHOTOTROPHIC HYPOCOTYL {ECO:0000313|EMBL:AED92886.1}, GN TIR5 {ECO:0000313|EMBL:AED92886.1}, GN TRANSPORT INHIBITOR RESPONSE 5 {ECO:0000313|EMBL:AED92886.1}; GN OrderedLocusNames=At5g20730 {ECO:0000313|Araport:AT5G20730, GN ECO:0000313|EMBL:AED92886.1}; GN ORFNames=T1M15.130 {ECO:0000313|EMBL:AED92886.1}, GN T1M15_130 {ECO:0000313|EMBL:AED92886.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AED92886.1, ECO:0000313|Proteomes:UP000006548}; RN [1] {ECO:0000313|EMBL:AED92886.1, ECO:0000313|Proteomes:UP000006548} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RX PubMed=11130714; DOI=10.1038/35048507; RG Kazusa DNA Research Institute; RG Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; RG European Union Arabidopsis Genome Sequencing Consortium; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T., RA Entian K.D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.A., RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Lankhorst R.K., Weitzenegger T., Bothe G., Rose M., RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., RA Mayer K., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.W., RA Bevan M., Fransz P.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [2] {ECO:0000313|EMBL:AED92886.1, ECO:0000313|Proteomes:UP000006548} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548}; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP002688; AED92886.1; -; Genomic_DNA. DR RefSeq; NP_568400.2; NM_122080.3. DR UniGene; At.10493; -. DR UniGene; At.49045; -. DR UniGene; At.59645; -. DR ProteinModelPortal; F4K5M5; -. DR SMR; F4K5M5; -. DR PaxDb; F4K5M5; -. DR EnsemblPlants; AT5G20730.3; AT5G20730.3; AT5G20730. DR GeneID; 832196; -. DR Gramene; AT5G20730.3; AT5G20730.3; AT5G20730. DR Araport; AT5G20730; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; F4K5M5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006548}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006548}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1038 1131 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 516 542 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1150 AA; 127440 MW; 97C84F00E3B934C9 CRC64; MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR WAAPAEFVVP LAKYTKAMYA QVSLGMRFRM IFETEECGVR RYMGTVTGIS DLDPVRWKNS QWRNLQIGWD ESAAGDRPSR VSVWDIEPVL TPFYICPPPF FRPRFSGQPG MPDDETDMES ALKRAMPWLD NSLEMKDPSS TIFPGLSLVQ WMNMQQQNGQ LPSAAAQPGF FPSMLSPTAA LHNNLGGTDD PSKLLSFQTP HGGISSSNLQ FNKQNQQAPM SQLPQPPTTL SQQQQLQQLL HSSLNHQQQQ SQSQQQQQQQ QLLQQQQQLQ SQQHSNNNQS QSQQQQQLLQ QQQQQQLQQQ HQQPLQQQTQ QQQLRTQPLQ SHSHPQPQQL QQHKLQQLQV PQNQLYNGQQ AAQQHQSQQA STHHLQPQLV SGSMASSVIT PPSSSLNQSF QQQQQQSKQL QQAHHHLGAS TSQSSVIETS KSSSNLMSAP PQETQFSRQV EQQQPPGLNG QNQQTLLQQK AHQAQAQQIF QQSLLEQPHI QFQLLQRLQQ QQQQQFLSPQ SQLPHHQLQS QQLQQLPTLS QGHQFPSSCT NNGLSTLQPP QMLVSRPQEK QNPPVGGGVK AYSGITDGGD APSSSTSPST NNCQISSSGF LNRSQSGPAI LIPDAAIDMS GNLVQDLYSK SDMRLKQELV GQQKSKASLT DHQLEASASG TSYGLDGGEN NRQQNFLAPT FGLDGDSRNS LLGGANVDNG FVPDTLLSRG YDSQKDLQNM LSNYGGVTND IGTEMSTSAV RTQSFGVPNV PAISNDLAVN DAGVLGGGLW PAQTQRMRTY TKVQKRGSVG RSIDVNRYRG YDELRHDLAR MFGIEGQLED PQTSDWKLVY VDHENDILLV GDDPWEEFVN CVQSIKILSS AEVQQMSLDG NFAGVPVTNQ ACSGATSFNR // ID REML3_ARATH Reviewed; 530 AA. AC F4KFT6; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 28-JUN-2011, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=B3 domain-containing protein REM-like 3; DE AltName: Full=Protein REPRODUCTIVE MERISTEM-like 3; GN OrderedLocusNames=At5g32460; ORFNames=F18O9.70; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130714; DOI=10.1038/35048507; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., RA Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., RA Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., RA van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., RA Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., RA Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., RA Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., RA Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF296831; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CP002688; AED93883.1; -; Genomic_DNA. DR RefSeq; NP_001154745.1; NM_001161273.2. DR ProteinModelPortal; F4KFT6; -. DR PaxDb; F4KFT6; -. DR EnsemblPlants; AT5G32460.1; AT5G32460.1; AT5G32460. DR GeneID; 3771028; -. DR Gramene; AT5G32460.1; AT5G32460.1; AT5G32460. DR KEGG; ath:AT5G32460; -. DR Araport; AT5G32460; -. DR TAIR; locus:2145811; AT5G32460. DR InParanoid; F4KFT6; -. DR OMA; LRIFPLE; -. DR OrthoDB; EOG09360BFM; -. DR PRO; PR:F4KFT6; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; F4KFT6; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 530 B3 domain-containing protein REM-like 3. FT /FTId=PRO_0000412840. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 241 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 393 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 431 530 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 60888 MW; EA0FA6E26036B4FD CRC64; MTDAMFSSSA KPHFIKPMLP GFETYIVIPK AFYSNYLEGR QEGNAAELRS DATEITWKIK IDGRRMTKGW EEFAVAHNLQ VDDILVFRHE GNLLFHVTPF GLSFCEILYS QRDEKDVKDT TGKVTRSRTV KKNGKNECSS VDTDFVVPVT ASNQRVDSFY LPRGFTTSSG SSKLCNEIIL IDEKDRPSTL KLRYNKSSNR FCVSRGWRAF CCRNGYRTGC FLRIILVRKG KTPVLRIFPL ERDEDNIEKH SKKVKQEVEH EESVKEETNV ESGKLKRDRL LQKDPKNLCS TSQDTNFVVP VTASNQRHDS FHLPKGLTTS SGLSKLCKKI IFMDQKGRSS ILDLSYSISD DRFTVRRGWK AFCCRNEHKT GCFLRLILVQ NGKTPVLRIF PLERYENSIA KNSKKIKQEV EYESAKEEKN LESLSLSDNS SFVVSVTVSN LSEDILHLPI RLSRSNLLDK KIHEIVLMNK EGRTWILSLK YSKYSGRFRI TRGWKSFCEA NGQKPGCTFL LKLHLSMTRF DQDGVAWDKK // ID F6GU14_VITVI Unreviewed; 711 AA. AC F6GU14; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_06s0004g02750 {ECO:0000313|EMBL:CCB43678.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594951; CCB43678.1; -; Genomic_DNA. DR RefSeq; XP_002282437.1; XM_002282401.3. DR RefSeq; XP_010651172.1; XM_010652870.2. DR STRING; 29760.VIT_06s0004g02750.t01; -. DR PRIDE; F6GU14; -. DR EnsemblPlants; VIT_06s0004g02750.t01; VIT_06s0004g02750.t01; VIT_06s0004g02750. DR GeneID; 100256989; -. DR Gramene; VIT_06s0004g02750.t01; VIT_06s0004g02750.t01; VIT_06s0004g02750. DR KEGG; vvi:100256989; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; F6GU14; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000009183; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 599 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 711 AA; 77951 MW; B458CC8528C74C37 CRC64; MKETEKSLDS QLWHACAGGM VQMPLVSSKV FYFPQGHAEH AHTNVDFAAA PRIPALVLCR VAAVKFMADP ETDEVYAKIR LVPIANNELD CEDDGVMGSS GSEAPEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT VIAKDVHGEI WKFRHIYRGT PRRHLLTTGW STFVNQKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIAGGP ESPSGWNPAS PYAGFPKFLR EDESKLMRNG VGGNSNPGSG GGLRGGRRVR PESVVEAATL AANGQPFEVV YYPRASTPEF CVKASGVRSA VRIQWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPIIH LSPFSPPRKK LRIPQHPDFP FDGQFPMSSF SSNPLGSSSP LCCLPDNTPA GIQGARHAQY GISLSDLHLN NKLQSGLFPT SFQRFDQHSR ITNGIITAHR KNNESISCLL TMGNSSQNLE KSANEKTPQF LLFGQPILTE QQMSRTCSSD AVSQVLTGKS SSDGSSDKAK KISDGLGSTL EQKGKPENLS NVGFSWHQGF QTTEIGLDTG HCKVFMESED VGRSLDLSVL GSYEELYTRL ANMFGIERSE TFSHVLYRDA TGAVKHTGDE PFSDFTKKAK RLTILMDSGS NNIGRTWITG MRNAENGLDS SNKTGPLSIF A // ID F6GU71_VITVI Unreviewed; 316 AA. AC F6GU71; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB43387.1}; GN OrderedLocusNames=VIT_06s0004g08270 {ECO:0000313|EMBL:CCB43387.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594951; CCB43387.1; -; Genomic_DNA. DR RefSeq; XP_010650799.1; XM_010652497.2. DR ProteinModelPortal; F6GU71; -. DR EnsemblPlants; VIT_06s0004g08270.t01; VIT_06s0004g08270.t01; VIT_06s0004g08270. DR GeneID; 100250145; -. DR Gramene; VIT_06s0004g08270.t01; VIT_06s0004g08270.t01; VIT_06s0004g08270. DR KEGG; vvi:100250145; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR InParanoid; F6GU71; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000009183; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 35667 MW; BB34EF841F0591D5 CRC64; MAAASSYEEA RKQHLEENKK RLEDLGILKI SQSLSLLTNS NSKSQKRPPK PKPESVYMLE PRRSSRVRNS VASYCDEVDI SLRPLRKRSK LNSSWASYLA RPLNEVITAS YEERVHAIKA AEEIQSNLQS GNPSFVKSMV RSHVYSCFWL GLPSKFCEDH LPKTLLDMVL EDENGTEYGA VYIGKRTGLS GGWRGFALDH KLDDGDALVF ELIEPARFKV YIVRASEVSS KKNDADVDEV HSAAKRRSKR ATRLNKCNES EPKQDRKSTQ KVIESSESTV HQGGGVKNED ELEDVNATEG PRKRITRSKR LTKKLS // ID F6GUB3_VITVI Unreviewed; 869 AA. AC F6GUB3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 10-MAY-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB43400.1}; GN OrderedLocusNames=VIT_06s0004g08100 {ECO:0000313|EMBL:CCB43400.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594951; CCB43400.1; -; Genomic_DNA. DR STRING; 29760.VIT_06s0004g08100.t01; -. DR PRIDE; F6GUB3; -. DR EnsemblPlants; VIT_06s0004g08100.t01; VIT_06s0004g08100.t01; VIT_06s0004g08100. DR Gramene; VIT_06s0004g08100.t01; VIT_06s0004g08100.t01; VIT_06s0004g08100. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; F6GUB3; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000009183; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 332 433 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 557 607 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 332 433 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 869 AA; 96175 MW; 86C4C7284E49F065 CRC64; MGSRICKNKW CGTTASFEWK KGWTIKSGAV VDLCYKCGSA YENLVFCETF HQEEDGWRQC SLCHKRIHCG CIVSNYQFEA LDYGGVRCSS CLKSPQCHPV RSNDETPNEF GTSTANSINN LQHPCVENRM NCNIVGKDNF MQLGKTMEAD ELNHLLQSQK GDANVSLGQI KQDDSMHAVR EVNTIFPTTS LPSIGPSEFA KSDNSIPMLM GKDVYESLVQ PSLNISLSSS SGPPNFLLPF PGNAVEGMEH SKSAFTFQQG QRTRHILPKP PNSSLSIGSE ANKSMVPEIR IARPPAEGRG RNQLLPRYWP RITDQELQQL SGDLNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGLPLR VQDAKGTEWT FQFRFWPNNN SRMYVLEGVT PCIQSMQLRA GDTVIFSRID PGNKLVIGCR KASNCVDVQD AQTSALSNGT IYGGSSFSSV TENLSTCAGK MNEDSPQQSL LIPEKKRTRN IGSKNKRLLM HSEDALELKI TWQETQDILR PPPSVEPNIV TIEGYEIEEY TEPPVFGKRS IFTARPSGGQ DQWGQCDNCS KWRKLPIDVF LPLKWTCADN IWDLSRCSCS APDEWNPKES ESLSRLGKDY KRQKSMESHK LAQEGEPTGL DALANAAVLE ENGGDSGEPS AEATTRHPRH RPGCSCIVCI QPPSGKGKHK STCICNVCMT VKRRFRTLML RKKKRQSEHE AESSQIKHQI HPINESEISG MVRNVSLQRN HSDGENNQSK IQEEVVAETG TGQIDLNCRP DNEEDLLPGV TGVSMTSLVQ AASHPLDFYL KQTGLTSLIS DQPMSSNSRP LPQVTGGEDG HLTDERSLSP LIWEHGSGAG EGYHKPDLD // ID F6GVQ7_VITVI Unreviewed; 284 AA. AC F6GVQ7; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 07-JUN-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB44042.1}; GN OrderedLocusNames=VIT_14s0083g00130 {ECO:0000313|EMBL:CCB44042.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594955; CCB44042.1; -; Genomic_DNA. DR RefSeq; XP_002279732.1; XM_002279696.3. DR UniGene; Vvi.31329; -. DR PRIDE; F6GVQ7; -. DR EnsemblPlants; VIT_14s0083g00130.t01; VIT_14s0083g00130.t01; VIT_14s0083g00130. DR GeneID; 100251473; -. DR Gramene; VIT_14s0083g00130.t01; VIT_14s0083g00130.t01; VIT_14s0083g00130. DR KEGG; vvi:100251473; -. DR InParanoid; F6GVQ7; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000009183; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 88 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 154 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 88 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 154 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 32155 MW; FDFD2171B55F8C57 CRC64; MSDYSWRVGG TSGISDSENG VGAVYLRKLT SSKYKGVVPQ PNGRWGAQIY EKHRRIWLGT FNEEGEAAKA YDVAARRFRG HAALTNFMVS GKGIQDDIET TFLNSHSKAE IVDMLRKHTY NDELEQSAHN YGSKESGADV MESKPSVCER VQLFDKAVTP SDVGKLNRMV IPKQHAEKHL PLQLASSSKG GLLNFEDNGG KIWRFRYSFW NSSQSYVLTK GWRRFVKEKN LKAGDIVSFH RSTGSDKRLF IEWEQRDSSR KPSMKQVESG QMVRLFGVNL FSKS // ID F6GVY5_VITVI Unreviewed; 649 AA. AC F6GVY5; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_18s0089g00910 {ECO:0000313|EMBL:CCB44120.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594956; CCB44120.1; -; Genomic_DNA. DR STRING; 29760.VIT_18s0089g00910.t01; -. DR PRIDE; F6GVY5; -. DR EnsemblPlants; VIT_18s0089g00910.t01; VIT_18s0089g00910.t01; VIT_18s0089g00910. DR Gramene; VIT_18s0089g00910.t01; VIT_18s0089g00910.t01; VIT_18s0089g00910. DR InParanoid; F6GVY5; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000009183; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 525 618 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 649 AA; 72371 MW; 17D85BDFB0269A90 CRC64; MAALNYQLNG SKLGTVNDAL YKELWHACAG PLVNVPREQE RVYYFPQGHM EQLEASMHQG LDQKMPSFNL PSKILCKVVN VHLRAEPETD EVYAQVTLLP EPDQSEITSP DPPLPEPQSC TVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSQNP PWQELVAKDL HGNEWHFRHI FRGQPRRHLL TTGWSVFVSS KRLAAGDAFI FLRQVTFCIG ENGELRVGVR RLMRQLNNVP PSVISSHSMH LGVLATASHA ITTGTLFSVF YKPRASPSEF IVSVNKYLEA RNHKVSVGMR FKMRFEGDEA PERRFSGTIV GVGDTGSSGW TDSEWRSLKV QWDEPSSILR PERVSPWELE PLVTETPLTA QPMQRSKRPR SPVLSSPTPG LSAFAVKTNS HSFTVNYSST AVSNNSAYWP QQSEPVPELF TPVPNKEYGK KKPENGNGYR LFGIQLVDNS NVEETLPVTT ISSGAGEDQP VVCLDADSDH QSQRSNINQS KTPTVGSDPE KSCLGSSLLQ SRQIRSCTKV HMQGMAVGRA VDLTQFSSYK ELLSKLEEMF DIKGELCGPT KKWQVVYTDD EDDMMMVGDD PWHEFCSMVR KIFIYTVEEV KELSPKAKLP LKGEFKPGKP DSKTTIGTED HSSMVGSGF // ID F6GXW8_VITVI Unreviewed; 924 AA. AC F6GXW8; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB44769.1}; GN OrderedLocusNames=VIT_08s0058g01300 {ECO:0000313|EMBL:CCB44769.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN594967; CCB44769.1; -; Genomic_DNA. DR RefSeq; XP_002267484.1; XM_002267448.3. DR RefSeq; XP_010653336.1; XM_010655034.2. DR UniGene; Vvi.821; -. DR STRING; 29760.VIT_08s0058g01300.t01; -. DR PRIDE; F6GXW8; -. DR EnsemblPlants; VIT_08s0058g01300.t01; VIT_08s0058g01300.t01; VIT_08s0058g01300. DR GeneID; 100251742; -. DR Gramene; VIT_08s0058g01300.t01; VIT_08s0058g01300.t01; VIT_08s0058g01300. DR KEGG; vvi:100251742; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; F6GXW8; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000009183; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 332 433 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 597 647 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 332 433 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 924 AA; 100885 MW; 0F99A0EEF9286DFA CRC64; MASKTCANVS CPGASSGSTI EWRKGWALRS GDFAILCDKC GSAFEQLVFC DMFHSKDSGW RKCTACGKRL HCGCIASRSL LELLDSGGVN CINCIRSSGP HPMTGDEKAN ESGAMTVDNV GEIRCTSVDN QLDGGSVEKM KLTQLGNDTS GDGLKNFLQS GNDNINGSLG QMKQEEVLPP QGETGSTCLS NLNQASIGSS IHAKLDICKA NMMVKDIHES LVQTNLSITL GAPSGNPNVF PSAVVEEREQ HKTSTPIQQG PRSRHLLPKP PRSALSPVLE TNTGIVPQIR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLVMGFR KASNSVSMQD TQLSAIPNGA HSSETFFSGV IENQPIISGY SGILQSLKGS TDPHLNALSK HLNSASGDIG WHKTEKHGGK TREGLLLPSM LVPEKKRTRT IGSKSKRLLI DGQDALELRL TWEEAQSLLR PPPSVKPVID VIEDYEFEAY TEPPVFGKRS IFTTLPSGGE EQWVQCDSCS KWRKVPHDYL VPCQWTCAEN LWDQSRCSCS APDELSPREL EHILRQYKDF RKRRIAAVHR PAQEHEPSGL DALANAAALG DDMSDPAATS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIAQINHNI WGAKDEAEVD STSRLATPNP DPSESEAGLA NESESRSQSN NLSTKLSETG KGKIDLNCHP DREEDLQVGS NRVSMMSLLQ VASLPLETYL KQNGLKSLAE QQGSSGSHVP PPQATGESEG PLNEDHCITA PAVSERENGG DEEHSGQDQS KNDA // ID F6GZE3_VITVI Unreviewed; 119 AA. AC F6GZE3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB45329.1}; GN ORFNames=VIT_00s1203g00010 {ECO:0000313|EMBL:CCB45329.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595036; CCB45329.1; -; Genomic_DNA. DR PRIDE; F6GZE3; -. DR EnsemblPlants; VIT_00s1203g00010.t01; VIT_00s1203g00010.t01; VIT_00s1203g00010. DR Gramene; VIT_00s1203g00010.t01; VIT_00s1203g00010.t01; VIT_00s1203g00010. DR InParanoid; F6GZE3; -. DR OrthoDB; \N; -. DR Proteomes; UP000009183; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 116 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 119 AA; 13621 MW; B362DF9E7111C91B CRC64; MTLQPLSPQE QKDAYLPAEL GVPSKQPSNY FCKTLIASDT STHGGFSVPR RAAEKVFPPL DFSQQPPAQE LIARDLHDNE WKFRHIFRGQ PKRHLLTTEK ELELQRQTNA RKCSSLHRG // ID F6H071_VITVI Unreviewed; 953 AA. AC F6H071; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_18s0001g13930 {ECO:0000313|EMBL:CCB46019.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595227; CCB46019.1; -; Genomic_DNA. DR STRING; 29760.VIT_18s0001g13930.t01; -. DR PRIDE; F6H071; -. DR EnsemblPlants; VIT_18s0001g13930.t01; VIT_18s0001g13930.t01; VIT_18s0001g13930. DR Gramene; VIT_18s0001g13930.t01; VIT_18s0001g13930.t01; VIT_18s0001g13930. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; F6H071; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000009183; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 843 927 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 953 AA; 104995 MW; 323D104B69C1284A CRC64; MMSSVEENIK AGGLVSGTQT TLIEEMKLLK EMQDQSGPRK AINSELWHAC AGPLVSLPQV GSLVYYFPQG HSEQVAVSTK RTATSQIPNY PNLPSQLMCQ VHNVTLHADK DTDEIYAQMS LQPVNSEKDI FPIPDFGLKP SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS MQPPTQELIV RDLHDITYTF RHIYRGQPKR HLLTTGWSVF VSAKRLRAGD AVLFIRDEKS QLLLGVRRAN RQQTSLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RHAFFLACPS EFVIPLAKYR KSVYGTQISV GMRFGMMFET EESGKRRYMG TIVGISDLDP LSWPGSKWRN LQVEWDESGC GDKQSRVSSW EIETPESLFI FPSLTSSLKR PMHAGFLGGE AEWGSLMKRP FIRVLENGNG VLPYPTIPNI CSEQLMKMLL KPQLVNPPGT LTPAFQDSGV KAASLQEARI IEGMIKQQPP PIPSENKLLQ NQNHPQPCLD QPDATNSDLP SQPNLVGQVQ PLNKLENQTP SGNAEKSNIE PVHTADQLSQ LTSTGQGDEE KLAKSPKNPQ NLVNQPSLSN QNKDPLQLQT NSFMQPHLES SIFHAQQISA PPFDSNPNAL SPYIDTDEWI LYPSANQSFG GVLRSPGPLS TFSLQDPSVV FPEAINPTLP SMGQEIWDHQ LNNAKCLSQA DQLPPFPQQD PCSLNCISSS SGLRDLSDDS NNQSGIYSCL NFDVSNGGST VVDPSVSSTI LDEFCTFKDA DFPDPSDCLV GNFSTSQDVQ SQITSVSLAD SQAFSRPDFL DNSGGTSSSN VDFDESSLLQ NSSWQQVAPP PMRTYTKVQK MGSVGRSIDV ASFKNYEELC SAIECMFGLE GLLNDQKGSG WKLVYVDYEN DVLLVGDDPW KEFVGCVRCI RILSPSEVQQ MSEEGMQLLN STAIEGINDS IRR // ID F6H2E1_VITVI Unreviewed; 249 AA. AC F6H2E1; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 12-APR-2017, entry version 29. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB46385.1}; GN OrderedLocusNames=VIT_19s0014g03560 {ECO:0000313|EMBL:CCB46385.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595229; CCB46385.1; -; Genomic_DNA. DR EnsemblPlants; VIT_19s0014g03560.t01; VIT_19s0014g03560.t01; VIT_19s0014g03560. DR Gramene; VIT_19s0014g03560.t01; VIT_19s0014g03560.t01; VIT_19s0014g03560. DR OrthoDB; \N; -. DR Proteomes; UP000009183; Chromosome 19. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 220 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 249 AA; 27659 MW; 5A8441C1890E972A CRC64; MGKVIGMKHG HRKAPNQCDS PSWSTTLAES VHNTSSPCEV EESNNSDKVN GSKCEANAVA KSGQSPFHDT PLQMKAPLPN GQPCGSGAGQ KGLDAKYQPR ISDHELQQIS RDLNSVVTPL FEKTLTISDA DYKLGRLVIP KKCAQEYFPL ISGPEGVTIR ILDTRGREWV FHYRYWSNAN SQMYVLDGLK DFVISMQWQA VTFYRIEPKG QLVLGLRKAS VTPPSHKVWH TKLTLSPSVC VKQISVLHE // ID F6H4L3_VITVI Unreviewed; 505 AA. AC F6H4L3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 07-JUN-2017, entry version 41. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB47077.1}; GN OrderedLocusNames=VIT_07s0031g00780 {ECO:0000313|EMBL:CCB47077.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595233; CCB47077.1; -; Genomic_DNA. DR RefSeq; XP_019076668.1; XM_019221123.1. DR PRIDE; F6H4L3; -. DR EnsemblPlants; VIT_07s0031g00780.t01; VIT_07s0031g00780.t01; VIT_07s0031g00780. DR GeneID; 100264623; -. DR Gramene; VIT_07s0031g00780.t01; VIT_07s0031g00780.t01; VIT_07s0031g00780. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR InParanoid; F6H4L3; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000009183; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 448 492 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 505 AA; 56918 MW; 90DC0F6959BF5605 CRC64; MGVDQNVVKQ EVEDEVFRMA SSRESRRSRE EDVTLAQLSQ TVRTFAPSTP QSLTKIKLKS STRTKQKKCV EKKEKGFGIK RRRSTFKLKH EASDHSPKSA SRKRNKAAVD GSCTPLKAKT SALIRAEEVQ SNLGPEFPSF VKVLVRSHVS SCFWMGLPGP FCDMHLPKKD VIITLEDESG AACQIKYIAD KTGLSAGWRR FSMDHKLLEG DVLVFHLVEP TSFKVYIIRA NDLTEVDGAL GLLELDTHTK NDAGKLVAVS DLDTVACKSS KRKHSKSLPL VVFQKKNRKT GSIPNLMQRE QSENDSEGNG SEVLEGSKFF EPAVQFKDIS FDNFNILVDG LLIDSELPED TRAKYYELCC SQNAFLHEKI VEGLNCRLIA EIISQTVQIA DALRACKLTT SRVEFTNWER TLKAFEVLGM NVGFLQARLD HLVSLAFDSE GAMYSRQYME VTIERAHAED EMRDLEDKLM ELKAASERMD ADIETLKEAV ENHVIRFQEE IVAPW // ID F6H567_VITVI Unreviewed; 927 AA. AC F6H567; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_12s0028g01170 {ECO:0000313|EMBL:CCB47435.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595235; CCB47435.1; -; Genomic_DNA. DR STRING; 29760.VIT_12s0028g01170.t01; -. DR PRIDE; F6H567; -. DR EnsemblPlants; VIT_12s0028g01170.t01; VIT_12s0028g01170.t01; VIT_12s0028g01170. DR Gramene; VIT_12s0028g01170.t01; VIT_12s0028g01170.t01; VIT_12s0028g01170. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; F6H567; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000009183; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 813 897 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 546 574 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 927 AA; 102992 MW; E8492B35F175C15B CRC64; MRLSSSGFAH QTEEGEKKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEV CLLPAELGSP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHGNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTIMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPS ALPSFHAHKD GDMSINSPLM WLRGDIGDQG IQSLNFQGYG LTPWMQPRLD ASMLGLQSNM QQAIAAASLQ ELRALDPSKH PAQSLLQFQQ PQNVSNSPAS VFRGQMLQQT QSQHAFLQSF QENPPQAQAQ AQAQAHAHAH AQAHAQAQAQ AQLLQQQLQG RQALSNQQQQ QQLQQQQQQQ HHQQQQQQQQ HQQQQPQLQQ PQQLHRQLSD QQHIPKVISA LSQLSSPTQS LPPSLQTIPS PIQQQIFPDS VGNPITTSDV STMQSLLGSF SQDGTSHLLN LHGSNPVISS SAFFPKQVAV EPPLPSGTTQ CVLPQVEELA TPPSNASELS TLLPPFPGRE YSVYQGVADP QNNLLFGVNI DSSSLMLQNG MSNLRSIGSE NDSVSMPFST PNFANAPGTD FPLNSDMTTS SCIDESGFLQ SSENLEQVNP PTRTFVKVHK LGSFGRSLDI TKFSSYDELR GELGRMFGLE GRLEDPLRSG WQLVFVDREN DVLLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGINVPN PIPSHRISNS GNSCDDY // ID F6H7U3_VITVI Unreviewed; 575 AA. AC F6H7U3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 10-MAY-2017, entry version 31. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB48285.1}; DE Flags: Fragment; GN ORFNames=VIT_00s0181g00260 {ECO:0000313|EMBL:CCB48285.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595252; CCB48285.1; -; Genomic_DNA. DR STRING; 29760.VIT_00s0181g00260.t01; -. DR EnsemblPlants; VIT_00s0181g00260.t01; VIT_00s0181g00260.t01; VIT_00s0181g00260. DR Gramene; VIT_00s0181g00260.t01; VIT_00s0181g00260.t01; VIT_00s0181g00260. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; F6H7U3; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000009183; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 330 431 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 330 431 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 575 575 {ECO:0000313|EMBL:CCB48285.1}. SQ SEQUENCE 575 AA; 63059 MW; 7751A22A4BC6115B CRC64; MSSSTVKICF NSECTDRKSE RLKKGWRTRS GDCVELCDRC GSLYDEGRFC ETFHSNASGW RGCKSCAKRV HCGCIASIHS FTLLDTGGIE CIPCARKNVV LTPNPAWPPH FFLPLPERLK DPVKNWSQSQ PVWRASNLFN TSIPQSDLRP RMPSEADLST GVDRLIVSER SSASSMEKKK IEDSSERSMN GGLKLGALEM LENGNSGTNC EEQPASCVNI PQQSSSLNDD HSAPLLSLAV PYASSSETNG QTVVSGTLSQ PTPSPPLAKK FSGHPHNGVD SSGEAQVRNG RPRGDARGRN QLLPRYWPRI TDQELQQISG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS QPEGLPLKVQ DAKGHEWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRLEPE GKLVMGFRKA STAPSSDQGN ETIKTGNGGS THGDVSIRKT KTGEVALTNR HLKSSLGSPS FSSMDQADLA DPASAWSKVD KSGYIAKEAL GAKSSIPRKR KNSTLGSKSK RLRIENEDLI ELKLTWEEAQ GLLRPPLNHV PNVVVIEGYE FEEYE // ID F6H9P6_VITVI Unreviewed; 1115 AA. AC F6H9P6; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_11s0065g00310 {ECO:0000313|EMBL:CCB48915.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595502; CCB48915.1; -; Genomic_DNA. DR RefSeq; XP_010656700.1; XM_010658398.2. DR UniGene; Vvi.4620; -. DR STRING; 29760.VIT_11s0065g00310.t01; -. DR PRIDE; F6H9P6; -. DR EnsemblPlants; VIT_11s0065g00310.t01; VIT_11s0065g00310.t01; VIT_11s0065g00310. DR GeneID; 100263801; -. DR Gramene; VIT_11s0065g00310.t01; VIT_11s0065g00310.t01; VIT_11s0065g00310. DR KEGG; vvi:100263801; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; F6H9P6; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000009183; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1003 1087 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1115 AA; 123259 MW; 1C69DC25C504530B CRC64; MKAPTNGAAA AATAAPNPCE GEKKSINPEL WQACAGPLVN LPPAGTLVVY FPQGHSEQVA ASMKKDVDAQ IPNYPNLPSR LLCILHNVTL HADPETDEVY AQMTLQPVPA YDKESLLRSD LALKTNKPQT DFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QELVAKDLHD NVWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDAVLFI RDEKQQLLLG IRRANRQPTN LSSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY KAAYSNQISL GMRFRMMFET EESGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESTA GERRNRVSIW EIEPVTAPFF ICPPPFFRSK RPRQPGMPDD ESSDLENLFK RTMPWLGDDI CMKDPQAVHG LSLVQWMNMQ QNPPLGNSAQ PNYMHSLSGS VMQNLAGADL SRQLGLSAPQ IPQQSNLQFN NAQRPPQQVP QLDQLTKLPA TLNPLGSVIQ PQQQLNDIAQ QPRQNLMNQT LPSSQVQAQL LQQPQALVQN HNILQQQPSV QNQQLHRNLP QNLQQQQQPQ QQQQQIMGQN QQQNLMPSQP PDQANQQLQM SDNQIQLQLL QKLQQQQQSL LAQQSTMQQT AQLTQLQDPQ RQLLDVSQNF SRSVASGQIL EMPQATSTSL PQSLVIPQQI TKSNSQTNVR FSHPPQQPKL QQQQPGMLPE LPGHVVLPPM TATNQLSTAG SSLLTGAAGA GQSGITDDVP SCSTSPSTNN CPNVIQPILN GRAHRTTAME EMAQSSATLL SGSGLETISA NANLVKDFQQ KPDIKPSLNI SKSHNQGFFA PQTYVNVAAV QTDYLDTSSS ATSVCLSQND HLQQNNNPLS FNQPSMMFRD TSQDREAQAD PRNNVQFGTN IDSQLGIPML PDPILSKGMV GSGKEFSNNL SSGGLLANYE NPKDAQQDLS SSIVSQSFGV PDMAFNSIDS AINDSSFLNR GPWAPAPQFQ RMRTYTKVYK RGAVGRSIDI TRYSGYDELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDIGNS VLQNQACSSS DGGNA // ID F6HFQ2_VITVI Unreviewed; 378 AA. AC F6HFQ2; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB50937.1}; GN OrderedLocusNames=VIT_01s0011g03070 {ECO:0000313|EMBL:CCB50937.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595752; CCB50937.1; -; Genomic_DNA. DR RefSeq; XP_002281709.2; XM_002281673.3. DR EnsemblPlants; VIT_01s0011g03070.t01; VIT_01s0011g03070.t01; VIT_01s0011g03070. DR GeneID; 100262843; -. DR Gramene; VIT_01s0011g03070.t01; VIT_01s0011g03070.t01; VIT_01s0011g03070. DR KEGG; vvi:100262843; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; F6HFQ2; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000009183; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 137 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 211 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 137 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 211 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 42291 MW; CDFA704DF6E811FD CRC64; MYTSFSSSEQ RSSLLLVSLN MDGSCIDEST TSDSISTSLP ALSALPATKS PESLCRVGSG TSVILDSESS IEAESRKLPS SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAAKAY DIAAQRFRGR DAVTNFKPLS ETEEDDIEAA FLNSHSKAEI VDMLRKHTYN DELEQSKRNY GLDANGKRSR AEGLMTPFGS DRVTKSREQL FEKTVTPSDV GKLNRLVIPK QHAEKHFPLQ TGTTSKGVLL NFEDMGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDIVSFQRST GGDKQLYIDW KARNGPTNQI NPVEPVEMVR LFGVNIFKVP VNSSVVVANN GSWTGKRMIE MELLSFECSK KQRVIGAV // ID F6HFY4_VITVI Unreviewed; 223 AA. AC F6HFY4; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 12-APR-2017, entry version 30. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB51103.1}; GN OrderedLocusNames=VIT_04s0079g00160 {ECO:0000313|EMBL:CCB51103.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595753; CCB51103.1; -; Genomic_DNA. DR EnsemblPlants; VIT_04s0079g00160.t01; VIT_04s0079g00160.t01; VIT_04s0079g00160. DR Gramene; VIT_04s0079g00160.t01; VIT_04s0079g00160.t01; VIT_04s0079g00160. DR InParanoid; F6HFY4; -. DR OrthoDB; EOG093616J3; -. DR Proteomes; UP000009183; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 192 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 223 AA; 24536 MW; 2B3767CD51B0F72E CRC64; MKLSTSGLGQ QQGHEGEKKC LNSELWHACA GPLVSLPTVG SRVVYFPQGH SEQVAATTNK EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPVELGIP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGKSVS FGLNSFLLLC SRLIVNPVSC CIANGSIRAP CVT // ID F6HFY5_VITVI Unreviewed; 707 AA. AC F6HFY5; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 42. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_04s0079g00200 {ECO:0000313|EMBL:CCB51104.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595753; CCB51104.1; -; Genomic_DNA. DR STRING; 29760.VIT_04s0079g00200.t01; -. DR PRIDE; F6HFY5; -. DR EnsemblPlants; VIT_04s0079g00200.t01; VIT_04s0079g00200.t01; VIT_04s0079g00200. DR Gramene; VIT_04s0079g00200.t01; VIT_04s0079g00200.t01; VIT_04s0079g00200. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; F6HFY5; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000009183; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 91 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 664 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 51 91 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 707 AA; 78748 MW; 212E43804D43B506 CRC64; METLAIHSYT FIAIHDKAKK GKPICMANVN KAKALMPCGR EMEGIQGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA TRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSCFTIFYN PRASPSEFVI PLSKYVKAVF HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSL FPLRLKRPWH PGASSLHDSR DEAANGLMWL RGETGDQGLQ SLNFQTVGMF PWTQQRLDPT FLGNDHNQQY QAMLAAGLQN LGSGDPLKQQ YMQFQQPFQY LQQTGSNNPL LQQRQQPQVI QQTIPQHMSH AQTQILQDNL PRHLLQQQLN NQQEQPQQQH SYQESFQIQS DQLQQRPQPN VPSLSFSKAD FPDSNTKFSS ITPSSMQNML GSMCPEGSGN LLNFSRTTGQ SMLSEQPPQQ PWATKFTHSQ FNAFANSTSL PPFTGKDAAV EPENCNLDAQ NHTLFGVNID SSGLLLPTTV PSFGSSSVDA DVSSMPLGAS GFQGSLFGCV QDPSELLQNA GQVDPPTPSR TFVKVYKSGS VGRSLDITRF SSYHELREEL GQMFGIEGKL ENPLRSGWQL VFVDRENDVL LLGDDPWEAF VNNVWYIKIL SPEDVQKMGK QGIESGFSPN SAQRMNSSGT DDRDLVSGLP SAGSLEY // ID F6HGM9_VITVI Unreviewed; 1155 AA. AC F6HGM9; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_11s0016g00640 {ECO:0000313|EMBL:CCB51377.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595756; CCB51377.1; -; Genomic_DNA. DR RefSeq; XP_010656094.1; XM_010657792.2. DR STRING; 29760.VIT_11s0016g00640.t01; -. DR PRIDE; F6HGM9; -. DR EnsemblPlants; VIT_11s0016g00640.t01; VIT_11s0016g00640.t01; VIT_11s0016g00640. DR GeneID; 100257618; -. DR Gramene; VIT_11s0016g00640.t01; VIT_11s0016g00640.t01; VIT_11s0016g00640. DR KEGG; vvi:100257618; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; F6HGM9; -. DR KO; K14486; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000009183; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1028 1121 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1155 AA; 129577 MW; 2BCE75398BE416CC CRC64; MKAPPNGFLA GSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TECVPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP VSKYDKEALL ASDLGLKQSR QPVEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS CDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISEL DAARWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYLCPPPFFR PKFPKQPGFP DDESDIESAF KRGMPWLGDD FGMKDAPSSI FPGLNLVQWM SMQQNNQFPA SQSGLFPPMV SSTVLHSNLS TDDPSKLLSF QAPALSAPSL QFNKVNQQNQ VSQFQQPSLA WPQQQQQQQQ QQLQQLLQTP INPQQHPQQH QRQQQQQPQQ QHQQQQQQQQ HQQHPQQQQQ HQLQQLQQPQ LLLQQHQQLQ PQQQQQQQQQ QQPQHQQQQQ QQPPPHQQQH QPPQQQQPLQ QLFQPAFVNG GVSSNQILNQ NSQQPILYPQ LQPQQSLTGN TLSQQSIQSA SRNSFQLSSL PQDLQFQQQM EQQPSLVQRH QQPHTQMQQS SPQLLQHSSS QRPQQPQQPQ VQQSSQQNLP EHQLQLQYLQ KLQQQQLLSP VSPRLQPQQP QQQQANQQNQ SLQHLSLSQQ QLSSNSFSTS ALMQSQQIPM NQLQGQHKPI TAIRAHSGLT DGDAPSCSTS PSTNNCQVPS NFLNRNQQGP AILLGDSVVE PASNLVQELQ SKSDIRIKNE VPSSKVPDQL RYKGTVTDQL EASSSATSYC LDAGTLQQNF TLPTFCLDGD VQSNPQSNPP FAVNIDGLTP DTLLSRGFDS GKDLQNLLSN YGGTPRDIET ELSTAAISSQ SFGVPNMSFK PGCSNDVAIT ETGVLSNGLW TNQAQRMRTY TKVQKRGSVG RSIDVTRYKG YDELRHDLAR MFGIEGQLED PQRTDWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS AEVQQMSLDG DLGHVPVPNQ ACSGTDSGNA WKGHYEDTSA ASFNR // ID F6HKN6_VITVI Unreviewed; 285 AA. AC F6HKN6; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 42. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB55458.1}; GN OrderedLocusNames=VIT_08s0007g02810 {ECO:0000313|EMBL:CCB55458.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595991; CCB55458.1; -; Genomic_DNA. DR EnsemblPlants; VIT_08s0007g02810.t01; VIT_08s0007g02810.t01; VIT_08s0007g02810. DR Gramene; VIT_08s0007g02810.t01; VIT_08s0007g02810.t01; VIT_08s0007g02810. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; F6HKN6; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000009183; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0080167; P:response to karrikin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32260 MW; CFB6E45A32F22701 CRC64; MFPTRSTTPF NFNLNQDTED DEDEEVEEVA AEEEEEEVII GAERQPMFEK PLTPSDVGKL NRLVIPKQHA EKYFPLGGDS GEKGLLLSFE DECGKCWRFR YSYWNSSQSY VLTKGWSRFV KEKRLDAGDV VLFQRDRSDA DRFFIGWRRR AGPAQDNPAA APPVAVHTNT GNTSVGWTRV FYSAHAYPSH PHAPPLPYQP DCLHAGSVAK NQTTPVGNSK RLRLFGVNLE CQMDESEPST PDGSSLSSQG PVHHQFYPQA YSSNAYNHMD INFSRDVNQM RDHRG // ID F6HLU4_VITVI Unreviewed; 908 AA. AC F6HLU4; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_10s0003g04100 {ECO:0000313|EMBL:CCB55818.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595992; CCB55818.1; -; Genomic_DNA. DR RefSeq; XP_002279808.1; XM_002279772.3. DR UniGene; Vvi.12192; -. DR STRING; 29760.VIT_10s0003g04100.t01; -. DR PRIDE; F6HLU4; -. DR EnsemblPlants; VIT_10s0003g04100.t01; VIT_10s0003g04100.t01; VIT_10s0003g04100. DR GeneID; 100242923; -. DR Gramene; VIT_10s0003g04100.t01; VIT_10s0003g04100.t01; VIT_10s0003g04100. DR KEGG; vvi:100242923; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; F6HLU4; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000009183; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 775 859 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100514 MW; D77BAF85205329B7 CRC64; MRLSPAGFTH QTQEGEKRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPAELGVPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYAKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSLHGIKDD DLGMNSPLMW LRGDNVDRGI QSLNFQGIGV NPWMQPRLDA SMLGLQTDMY QAMAAAALQE MRAVDPSKQA PAPLLHYQQP QNVASRSSCI MQPQMLQQSQ PQQAFLQGIH ENTNQAQSQT QSHLLQQHLQ HQHSFNNNNN NNNQQQQPAP PPQQPQQQLV DHQRIPSVVS AISQFASASQ SQSPSLQTIS SLCQQQSFSD STGNPGTSPI ISPLQSLLGS FPQDESSNLL NMPRSTSLMP SAAWLPKRVA VEPLLPSGAS QCILPQVEQL GQPQTNISQN SISLPPFPGR ECSIDQEGST DPQSHLLFGV NIEPSSLLMQ NGMSGLRGVG SESDSTAIPF SSSNFMSSTG TDFSLNPAMT PSSCIDESGF LQSPENVGQV NPPTRTFVKV YKSGSFGRSL DITKFSSYHE LRGELARMFG LEGQLEDPRR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSLQEV QQMGKRGLEL LNSVPIQRLT SSSCDDYASR QDSRNLSTGI TSVGSLDY // ID F6HM45_VITVI Unreviewed; 779 AA. AC F6HM45; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_10s0003g00420 {ECO:0000313|EMBL:CCB55633.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595992; CCB55633.1; -; Genomic_DNA. DR STRING; 29760.VIT_10s0003g00420.t01; -. DR PRIDE; F6HM45; -. DR EnsemblPlants; VIT_10s0003g00420.t01; VIT_10s0003g00420.t01; VIT_10s0003g00420. DR Gramene; VIT_10s0003g00420.t01; VIT_10s0003g00420.t01; VIT_10s0003g00420. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; F6HM45; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000009183; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 779 AA; 85135 MW; 00BB12E9F897ADF9 CRC64; MVAMIDLNTV DDDETPSSGS SSSSSSSASA SASTVCGSLL SAASSVCLEL WHACAGPLIS LPKKGSLVVY FPQGHLEQLS DYPAVAYDLP PHVFCRVVDV KLHAEVVTDE VYAQVSLVPE TKIKQKLQEG EIEADGGEEE DIEGSIKSMT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GFEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGGDGELRL GIRRAAQIKG SSPFPALCSQ QLNLNTLTAV VNAISTRSVF NICYNPRASS SEFIIPLRKF SKSIDHSFSA GMRFKMRVET EDAAERRYTG LITGISDMDP VRWPGSKWRC LLVRWDDIEA NRHNRVSPWE IELSGSLSGS GSLTVPGSKR TRIGLPGTRP DFSVPNGMGV SDFGESSRFQ KVLQGQEIFG FNTPYDGVDT QDHHPSEIRC FPGSSCSGIA AIGNGVRNPL GNSDISYKGI GFGESFRFHK VLQGQETFPS PPCGRALSAN QAHENGSFGI FDGVQVPTSR NGWPALVQGY NAHTHLSTPS VQVSSPSSVL MFQQASTAAP NIYSMHSANN QEKEQEISNR SSFDIPEVYG EKLTPSRCEL SVRGGGQGGM NFFGLLNEHN QLAVPHPLVT QSAFRGSQDL VPTCKSSCRL FGFSLTEERS IGNKVDNPTP VTSSLIPGTS FLPQQLHSEP PVMTKAIGSN CTKVSDFYAD HEDVVMLVRD DSWHDMHLSL RPAFYSPKSG LAEIQNGNLQ HLMKNYDIY // ID F6HNF9_VITVI Unreviewed; 679 AA. AC F6HNF9; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_13s0019g04380 {ECO:0000313|EMBL:CCB56178.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN595998; CCB56178.1; -; Genomic_DNA. DR STRING; 29760.VIT_13s0019g04380.t01; -. DR PRIDE; F6HNF9; -. DR EnsemblPlants; VIT_13s0019g04380.t01; VIT_13s0019g04380.t01; VIT_13s0019g04380. DR Gramene; VIT_13s0019g04380.t01; VIT_13s0019g04380.t01; VIT_13s0019g04380. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; F6HNF9; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000009183; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 676 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 679 AA; 74823 MW; 42A4615819F0E8F3 CRC64; MDPMKELDKC LDPQLWHACA GGMVHMPSLN SRVVYFPQGH AEHAYGNVDF GNPRIPPLVL CRVSAVKYLA DPESDEVYAK IRLIPLRNTE GETEDDVLMG GNGIEAPEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG ETWRFRHIYR GTPRRHLLTT GWSNFVNKKN LVAGDSIVFL RAENGDLCVG IRRAKRAGCG PESPSGWNPA SGNGTSPYRG YSGFLREDEN RPILTHSNAG FRGKGRVRAE SVAEAATLAA NGQPFVIVYY PRASTPEFCV KASSVRAAMQ IQWCPGMKFK MAFETDDSSR ISWFMGNISS VHVNDPIRWP NSPWRLLQVT WDEPDLLQNV KRVNPWLVEL VSHVPSIHLS PFSPPRKKLR LQQQSEFPLV GQIPMPSFSS NALRPSSPLC CISDNIPAGI QGARHAQFGL SSSDLHFNKL QLGLFPLGLQ QQLDQTAPPS SILSGNTMSN HENNENISCL LTIGNSTQNS KKNNEIKAPY FFLFGQPILI EQQVSQSCSG DTAGISSSDG NPEKTPNFSD GSGSAFHQNG PQESSSDEGL LTWYKDHQKT NLGLETGHCK VFMESEDVGR TLDLSILGSY EELYRKLANM FGIERAEMLS NVLYRDEAGI VKHIGDAPFG EFLKTARRLT ILADSAATP // ID F6HQC1_VITVI Unreviewed; 252 AA. AC F6HQC1; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 10-MAY-2017, entry version 31. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB56878.1}; GN OrderedLocusNames=VIT_03s0063g00620 {ECO:0000313|EMBL:CCB56878.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CCB56878.1; -; Genomic_DNA. DR PRIDE; F6HQC1; -. DR EnsemblPlants; VIT_03s0063g00620.t01; VIT_03s0063g00620.t01; VIT_03s0063g00620. DR Gramene; VIT_03s0063g00620.t01; VIT_03s0063g00620.t01; VIT_03s0063g00620. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; F6HQC1; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 6 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 252 AA; 28743 MW; AB9781A54BE3FAC9 CRC64; MGVSEVSYEE SRRKRLEENK KRMEELNLHK LSESLRTARS PKSSPVKKVK PRTPRSPVDL SAVRRSSRFV DKPSPNYKEV PIEPLERSKR LSYQRRDLLN RVYASDEARV YAVERAEELQ SGLETDFPSF VKPMLQSHVT GGFWLGLPVH FCKMHLPKHD EMISLVDEDG NESPVKYLAE KTGLSGGWRG FAIDHELVDG DALVFQLIKP TKFQVYIIKP DQSKDGDKDD GDEDSDASPL DMSAKRIRAS KK // ID F6HQC2_VITVI Unreviewed; 190 AA. AC F6HQC2; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB56879.1}; GN OrderedLocusNames=VIT_03s0063g00640 {ECO:0000313|EMBL:CCB56879.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CCB56879.1; -; Genomic_DNA. DR EnsemblPlants; VIT_03s0063g00640.t01; VIT_03s0063g00640.t01; VIT_03s0063g00640. DR Gramene; VIT_03s0063g00640.t01; VIT_03s0063g00640.t01; VIT_03s0063g00640. DR OrthoDB; \N; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 190 AA; 21807 MW; 7FC60A34C2905A5B CRC64; MEMVQEERAM MGKNMTNGRL GRARLWRPSW FCSRKGSLSL FIGLSKYPLM EQAKKIIADH GSELPSLTRT MSRSNVAKGF WMYFPRSFCK LHLPENDATI ILEDEAGEEY ETNFLVNRSG LSAGWRKFSL DHQLKVGDIL VFLLVGPCKF KVFIVRVENT IEDDVAGCLL DLRDSRRKNP SLGRRSSREQ // ID F6HQE3_VITVI Unreviewed; 231 AA. AC F6HQE3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB56900.1}; GN OrderedLocusNames=VIT_03s0063g00910 {ECO:0000313|EMBL:CCB56900.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CCB56900.1; -; Genomic_DNA. DR EnsemblPlants; VIT_03s0063g00910.t01; VIT_03s0063g00910.t01; VIT_03s0063g00910. DR Gramene; VIT_03s0063g00910.t01; VIT_03s0063g00910.t01; VIT_03s0063g00910. DR InParanoid; F6HQE3; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 114 192 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 231 AA; 27633 MW; ED36DF5A96FEEF3F CRC64; MMKIKKIEIK VFHIILRIPT AFIGHFNGLV PEKAILRDFF GRVWHVEVGQ IGKDVCFLNG WQRFLTDNSV EEGDFLVFRY DGNHIFDFKL FGRTACEKKD TDKVSVDIYQ KDFSVKEEKD VEEAEREEKK QEEEEDEEEE EEEEEEEEEE EEEEEEDEEE EEEDEEDEEE EEEEEEEEEE EEESSDEEEE DKTNDREEEE PQPKSSNKKV VVLKHKYSGR GRPPIGTRNY S // ID F6HQF8_VITVI Unreviewed; 1171 AA. AC F6HQF8; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 10-MAY-2017, entry version 40. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB56915.1}; GN OrderedLocusNames=VIT_03s0063g01460 {ECO:0000313|EMBL:CCB56915.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596006; CCB56915.1; -; Genomic_DNA. DR PRIDE; F6HQF8; -. DR EnsemblPlants; VIT_03s0063g01460.t01; VIT_03s0063g01460.t01; VIT_03s0063g01460. DR Gramene; VIT_03s0063g01460.t01; VIT_03s0063g01460.t01; VIT_03s0063g01460. DR eggNOG; ENOG410JP1W; Eukaryota. DR eggNOG; ENOG41119B4; LUCA. DR InParanoid; F6HQF8; -. DR OrthoDB; EOG09360ESJ; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0009512; C:cytochrome b6f complex; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR HAMAP; MF_00396; Cytb6_f_PetM; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012595; PetM_cyt_b6/f_cplx_su7. DR Pfam; PF02362; B3; 6. DR Pfam; PF08041; PetM; 1. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 1139 1161 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 215 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 313 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 504 602 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 625 718 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 863 960 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 215 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 313 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 504 602 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 625 718 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 863 960 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 121 148 {ECO:0000256|SAM:Coils}. FT COILED 411 456 {ECO:0000256|SAM:Coils}. FT COILED 738 779 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1171 AA; 133442 MW; CB2DB971C1659724 CRC64; MSSPPKVFPE FFKVYLPELS WDRMQIPTAF VKHFNGFVPE KAILRDSVGR VWHVEVGQIG KNVYFLKGWQ QFLTDNLVEE GDLFVFQYDG SYIFDFKLYG TTGCQKKDSE VNVDVNKKKF FVKGEEDVEE VERNEEEEEE EEEEEEPQSK SSNKGVVVFK RKYSGRGGYK QTAIKKTRSA YKETSHTKSK YKKACTGNVE VDNALDFKSI VKPENPCFIT KIRPGRRSKL YVPVDILKDH NIALPPRVLL CDPHGRSWPG DVTIWKDGRT WIGGWRAFCK WNHVGENDSC ICEFVQESGC RGDLIVVHIH RRIPTAFVEH FNGFMPEKAI LRDFVGRVWH VEVGPIGKNV YFLNGWQQFL TENSVEEGDF LVFRYAGNCI FDFKLLGRTE CEKKDTKVVD MDIYKKDFCV KEKDVEEAEG EEEEEEEEEK EEEEEEEEED EEEEKMEEDD EEEERKLQPK SPNMKMVVKH KYSSRGCPAI DRKNYCGYKQ SAVKKTRGVY KETAHTKSNY KKASSSQAEY VPADILQDFN IALPPRVLLR DLHGRSWPGD VSVWKDGRTW IGGWQAFCKS NHLDENDCCI YEFVLENGHH GDFIVLHIHR AQPKISPRGF FLLQNEMSSP QEECPEFFKV CLPECSSDKL LIPTAFREHF NGFVPHKAIL RDPVGRVWQV ELSKIGKDVY FQKGWQKFVT DNFVEMEDFL VFRYDGGYIF DFKLFRNTGC EKKGSEEINV GIYKRCFCVN EEKDVEEEKS NEEEGEEEED SAEEERDSTE DESSEKEEEG GKMSEEEEEP QPKSSKKKGV VYKRKYSGRG QSPIVGYKQT AIKKSRVASE ESNCTKRKYK EASAVQVEEN IAFEIESIVN PQNPYFETKV RPARRSKLYV PLDVLRDHNI KLPPKMTLRD PLGRLWIGKV AVWKDGRTWI GWKPFCKWNN VGENDTCICE FVQESGHEGY LLVVHILRAQ PSRRAPKCKC RAESGEEMAE PMGQSFSRNK LISSACQPTI LLSPYPTSPI SLLTKCHLLP SHHLCTSIFE QSSSTSSHQI VGKIAMATAS ATLSPSTFSA AAIAGLGRTS QRRKTNVHFI GGLNSFDGLK AYNSVASLGL PVCTEQSFAK IVGSLKSPSQ GKGRGGGALS STCNAVGEIF RIAAIMNGLV LVGVAVGFVL LRIEASVEEA E // ID F6HR27_VITVI Unreviewed; 623 AA. AC F6HR27; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_08s0040g01810 {ECO:0000313|EMBL:CCB57076.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596008; CCB57076.1; -; Genomic_DNA. DR STRING; 29760.VIT_08s0040g01810.t01; -. DR PRIDE; F6HR27; -. DR EnsemblPlants; VIT_08s0040g01810.t01; VIT_08s0040g01810.t01; VIT_08s0040g01810. DR Gramene; VIT_08s0040g01810.t01; VIT_08s0040g01810.t01; VIT_08s0040g01810. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; F6HR27; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000009183; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 617 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 623 AA; 69387 MW; 304A443E17D0552B CRC64; MIPFLGSKEK SKEAGKCLNP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH ACASVDFRNY PRIPAYIPCR VSAMKFMADP ESDEVYAKIT LVPLNGSESD YDDDGYGNGT ESQEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TADPPVQNIL AKDVHGETWK FRHIYRGTPR RHLLTTGWST FVNHKKLIAG DSIVFLRAEN GDLCVGIRRA KRGIGCGPES SSGWNPAGCN YVMPYGGFSA FLREDENKLT RNGNGGSSGS NGSFFGRVKV TAEAVIEAVR LAVNGQPFEV IYYPRASTPE FCVKSSLVKS ASQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPV RWPDSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNMPSI HLTHFSPPRK KLRFPQYPDF PLDAQFSMPT FSSNLVGPSN PFGCLSDNIP AGMQGARHAQ YGLSLSDPHH NKFQSGLFPA PFPQLDHPAT PPKASNDYKS DDRKTGFTLF EHSSCEGYQT YKVNHRETEP NLETGHCKVF MESEDVGRTL DLSLLTSYDE LCGKLAKMFT IEDSEMRNHV LYRDATGAVK HIGDEPFSDF TKTAKRLTIL MDSSSDNVGV YRK // ID F6HU98_VITVI Unreviewed; 456 AA. AC F6HU98; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB58321.1}; GN OrderedLocusNames=VIT_02s0025g03000 {ECO:0000313|EMBL:CCB58321.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596251; CCB58321.1; -; Genomic_DNA. DR PRIDE; F6HU98; -. DR EnsemblPlants; VIT_02s0025g03000.t01; VIT_02s0025g03000.t01; VIT_02s0025g03000. DR Gramene; VIT_02s0025g03000.t01; VIT_02s0025g03000.t01; VIT_02s0025g03000. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; F6HU98; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000009183; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 456 AA; 50951 MW; 723BA90437E11BD6 CRC64; MIGTSSHEPN QIIRGSLRRH PPRVRKITHI LLSSISLKIQ LKSEIMDLLP DRDVVCEQEQ VIRGKQLPFS YSSSPSPSSS SSQYRNLVPL PNGGDRWDAQ IQRGWLGHQE DGMRCFEGGA ASKLELMDTS PTNDEDDVVD DDVRRRDSQA LEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSAN EKGLLLNFED RSGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV SFQRGVGESG KDRLYIDWRR RPDAPEPSSL AHHFFHRSVP WSPLFLQAPV AGGAVSMGRQ QVQLAQPNYM SHLGGRNPYG SGAYSYNNAV NPCSGSVFYL RPTAPQQVGM VQVQQGGVEP MVFNSVPVVH GKAAAKRLRL FGVNMECPIS ESDECDILSS TSIPHAAVAS QPPHLSSPSS HHHPLQLRLY NGTPLPTLPT NLLNKGKESM SFDLDI // ID F6HWD1_VITVI Unreviewed; 101 AA. AC F6HWD1; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 12-APR-2017, entry version 29. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB58995.1}; GN OrderedLocusNames=VIT_03s0167g00010 {ECO:0000313|EMBL:CCB58995.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596268; CCB58995.1; -; Genomic_DNA. DR PRIDE; F6HWD1; -. DR EnsemblPlants; VIT_03s0167g00010.t01; VIT_03s0167g00010.t01; VIT_03s0167g00010. DR Gramene; VIT_03s0167g00010.t01; VIT_03s0167g00010.t01; VIT_03s0167g00010. DR InParanoid; F6HWD1; -. DR OrthoDB; \N; -. DR Proteomes; UP000009183; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 98 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 101 AA; 11415 MW; 6724DE1EE5BCFC03 CRC64; MTLQPLSPQE QKDAYLPAEL GVPSKQPSNY FCKTLIASDT STHGGFSVPR RAAEKVFPSL DFSQQPPAQE LIARDLHDNE WKFRHIFRGQ PKRHLLTTVG L // ID F6HWQ3_VITVI Unreviewed; 769 AA. AC F6HWQ3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_01s0244g00150 {ECO:0000313|EMBL:CCB59117.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596277; CCB59117.1; -; Genomic_DNA. DR RefSeq; XP_002268849.1; XM_002268813.4. DR RefSeq; XP_010656858.1; XM_010658556.2. DR UniGene; Vvi.944; -. DR STRING; 29760.VIT_01s0244g00150.t01; -. DR PRIDE; F6HWQ3; -. DR EnsemblPlants; VIT_01s0244g00150.t01; VIT_01s0244g00150.t01; VIT_01s0244g00150. DR GeneID; 100250592; -. DR Gramene; VIT_01s0244g00150.t01; VIT_01s0244g00150.t01; VIT_01s0244g00150. DR KEGG; vvi:100250592; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; F6HWQ3; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000009183; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 638 731 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 769 AA; 86085 MW; C78FE6A0BBAB6B79 CRC64; MDFVDSEDAL YKELWHACAG PLVTVPRVGE RVFYFPQGHL EQVEASTNQV ADQQMPAYDL RAKILCRVIN VHLKAESDTD EVFAQVTLLP EPKQDENSAE KEDVLTPTPR PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSKQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSLFVS SKKLVAGDAF IFLRGENGEL RVGVRRAMRQ LSNGPSSVIS SHSMHLGVLA TAWHAVSTGT IFTVYYKPRT SPAEFIIPFD QYMEAVKNHY SIGMRFKMKF EGEEAPEQRF TGTVIGTEDA DPMRWPGSKW RCLKVRWDET SSVPRPECVS PWNIEVALTP PSLNPLPVSR SKRPRANMMS SSTESSVLTR EGLSKVTIDH SPGSGFSRAL QGQEISTLRG IFMENNNDLV TTQKSIVQPR SQVVDQMDSA STKRSFMSED WVPQLRQGVQ CANLISGPQS MMHSSTVLNM ESNVKLSEGA KGKPYPTPAN VRYSGFSGYG GLHDLGAEQC PGNWLLPLLP HSYSETTPHL MGLKPQPLYV QEEVVKSKGD GNCKLFGISL ISKPAANPMH RPQGEIQLTM ENPARHPEQS KSSKYMEIGG FEHEKPFQAL EQQLSRDDQS KLHSGSTRSC IKVHKQGIAV GRSVDLTKFN GYTELISELD QIFEFNGELI SLNKDWLIVF TDDEGDMMLV GDDPWPEFCS MVRKIFVYTR EEIQRMDPRP LNPKVRENPT VLEKKGGAKE AKELETSLSS ESLGQGKSA // ID F6HYI2_VITVI Unreviewed; 357 AA. AC F6HYI2; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 38. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB59746.1}; GN OrderedLocusNames=VIT_11s0037g00010 {ECO:0000313|EMBL:CCB59746.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596499; CCB59746.1; -; Genomic_DNA. DR RefSeq; XP_002276492.1; XM_002276456.3. DR UniGene; Vvi.21520; -. DR EnsemblPlants; VIT_11s0037g00010.t01; VIT_11s0037g00010.t01; VIT_11s0037g00010. DR GeneID; 100250084; -. DR Gramene; VIT_11s0037g00010.t01; VIT_11s0037g00010.t01; VIT_11s0037g00010. DR KEGG; vvi:100250084; -. DR eggNOG; ENOG410IWEF; Eukaryota. DR eggNOG; ENOG410YI8X; LUCA. DR InParanoid; F6HYI2; -. DR KO; K09287; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000009183; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 101 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 169 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 101 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 169 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 40605 MW; 6A6E41B36065BAD7 CRC64; MEEEILSVIS NGGTNVIVEA SDSNSSSLPF HGSKRTKQGI SVSSGRFKGV VPQQNGHWGA QIYANHQRIW LGTYKSETEA AMAYDSAAIK LRSGDNHRNF PWTNLTIQEP NFQSFFSTET VVNMIKDGSY PSKFAEFLKT ESQRGETEVL SLDQVGVHRN GRFMCRLLFQ KELTPSDVGK LNRLVIPKKY ATKHFPPISE SAEENEVGGA AADMQLVFYD RLMRLWKFRY CYWRSSQSYV FTRGWNRFVK DKELNENDIV TFYLCEYGQG TKEGRTFCMI DVAYDRSTDG RDANNGSFVE GPNRYVGLQI ELQQDLKQNI GYNKHERKSQ EEEESVGTEP ALEGQKKGLR LFGVQIG // ID F6HZX3_VITVI Unreviewed; 733 AA. AC F6HZX3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 07-JUN-2017, entry version 44. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB60239.1}; GN OrderedLocusNames=VIT_07s0005g05400 {ECO:0000313|EMBL:CCB60239.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596502; CCB60239.1; -; Genomic_DNA. DR RefSeq; XP_003632397.1; XM_003632349.3. DR UniGene; Vvi.7567; -. DR STRING; 29760.VIT_07s0005g05400.t01; -. DR PRIDE; F6HZX3; -. DR EnsemblPlants; VIT_07s0005g05400.t01; VIT_07s0005g05400.t01; VIT_07s0005g05400. DR GeneID; 100854233; -. DR Gramene; VIT_07s0005g05400.t01; VIT_07s0005g05400.t01; VIT_07s0005g05400. DR KEGG; vvi:100854233; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; F6HZX3; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000009183; Chromosome 7. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 593 695 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 593 695 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 733 AA; 81066 MW; E2046CD4CA2729F8 CRC64; MKGIEVDDGG DLHANDGVGL GDTGGCAGGT DTTGFDAMED EAMGVGDGEI WLDRDPDDLL DVHDNSIFYG DFPPLPDFPC MSSSSSSSSA PAPVKSIACS SSSSSASSSS AASWAVLKSD AEVDEDKKNH RDHHDPVEVP PAALSSTASM EIPQEAPDQG LEDVDCINVM ENFGYMDLLE PNDIWDPSSL FHMDDSHDFE AEQQPQQEQE QPKPQPELPP QQQDEEFMVQ RNDEEGQRPS EDLAMVFFEW LKSNKESISP EDLRNIKLKR ATIECAAKRL GGGKEGMKQL LKLILEWVQN HQLQKKRISE TQISHFPYNY QDPYATQSPN PNPSPIPNIN CNPIPPDPNP CFPSPHWLPQ SPYMTDPSPV MAPPPFPPMV GYMGDPFANG PSNINSHPYQ STSEYHILDS TNTWQPSQFS LPSPYTSFPE SNLPLAPAPQ PPQAFAGYGN QFTYQYFPGN GERLTRLGSS ATKEARKKRM ARQRRVFSHH HRHHNHHNQQ QQNPSPDQQA RPAGNEGCNS AAQANQANWV FWPSAGAASN SPAGAPDAPQ PQPPPPPPPA VDRQAGQAQN NPRQLAAERR QGWKPEKNLK FLLQKVLKQS DVGNLGRIVL PKKEAETHLP ELEARDGITI PMEDIGTSRV WNMRYRFWPN NKSRMYLLEN TGDFVRSNGL QEGDFIVLYS DVKCGKYMIR GVKVRQSGPK SESKRSGKSQ RNQQTASPAG NGSTPSLSKR TTK // ID F6I2Z8_VITVI Unreviewed; 461 AA. AC F6I2Z8; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 37. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB61315.1}; GN OrderedLocusNames=VIT_15s0048g02370 {ECO:0000313|EMBL:CCB61315.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596739; CCB61315.1; -; Genomic_DNA. DR RefSeq; XP_002268399.1; XM_002268363.3. DR UniGene; Vvi.25259; -. DR EnsemblPlants; VIT_15s0048g02370.t01; VIT_15s0048g02370.t01; VIT_15s0048g02370. DR GeneID; 100259130; -. DR Gramene; VIT_15s0048g02370.t01; VIT_15s0048g02370.t01; VIT_15s0048g02370. DR KEGG; vvi:100259130; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; F6I2Z8; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000009183; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 101 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 139 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 101 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 139 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 36 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 461 AA; 51722 MW; A1F6A5E80EF94E9B CRC64; MEFGQEMKGF CDKEEEQEEE EEEEEEEEEI MGETCKVPFS SSSSSCASPM YKGVAPEPYR YEQQQQQRAW LGTSEPEEEA ARSYDRAALE LGGPDGVTDS SRKLEFVNLS LRNNEDGDGG GGCSSSVGGG VCVEREHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS ASDKGLLLNF EDRDGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFERGVGE SGKDRLYIDW RRRPDAPDPT SLSHLHLPTQ LPFSQSVRWG RLYSLPQSPS MSMNMPQGHD HMQQLNYSSI HPYHRHHHHH PHHHHHHHHH HHQRNTLGGG YHDYNAVTSG SGSLYYLSSS SSSHQIGAVQ QGGDAPMVIN SVPVVHGKTT AKRLRLFGVN MECSTPDDHP ECNILPSTAI PHVTMASLSP HLPSSSLPPL QLRLFNGSPL QAVPDEFPKK GKTSLSFDLD L // ID F6I5F3_VITVI Unreviewed; 191 AA. AC F6I5F3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB62171.1}; GN OrderedLocusNames=VIT_15s0024g00930 {ECO:0000313|EMBL:CCB62171.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596748; CCB62171.1; -; Genomic_DNA. DR RefSeq; XP_002267731.1; XM_002267695.3. DR ProteinModelPortal; F6I5F3; -. DR EnsemblPlants; VIT_15s0024g00930.t01; VIT_15s0024g00930.t01; VIT_15s0024g00930. DR GeneID; 100255684; -. DR Gramene; VIT_15s0024g00930.t01; VIT_15s0024g00930.t01; VIT_15s0024g00930. DR KEGG; vvi:100255684; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; F6I5F3; -. DR OrthoDB; EOG09360Z5S; -. DR Proteomes; UP000009183; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 191 AA; 21876 MW; F9050CA0A1291282 CRC64; MKERKRGREQ LQQRNLEDRQ SNSRTLPETP HMDSLARNRS TKAENSKMEE SGGQTSEEPA TKFQADEIHP LLGKPYFHVV LVKSHLNQMV LPTKMHPSVP SAVIPAVLVH QDKRWEMTFN GDHRTHKRFD IGWRTFVNDN NLKAGDACVF ELMECNTSNI KFRVQILRGD IPSMLLDRAN GETSDTAIVI E // ID F6I6F3_VITVI Unreviewed; 702 AA. AC F6I6F3; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=VIT_15s0046g00290 {ECO:0000313|EMBL:CCB62549.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596755; CCB62549.1; -; Genomic_DNA. DR STRING; 29760.VIT_15s0046g00290.t01; -. DR PRIDE; F6I6F3; -. DR EnsemblPlants; VIT_15s0046g00290.t01; VIT_15s0046g00290.t01; VIT_15s0046g00290. DR Gramene; VIT_15s0046g00290.t01; VIT_15s0046g00290.t01; VIT_15s0046g00290. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; F6I6F3; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000009183; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 702 AA; 77938 MW; 6692AB4F1408849C CRC64; MAHGNNIRGG LEPGLESDHL FTELWRACAG PLVDVPKPHE RVFYFPQGHM EQLQASTNQG VDQRIPLFNL PSKILCRVVH TRLLAEQETD EVYAQITLQP EADQTEPKSP DSCPDEAPKQ TVHSFCKILT ASDTSTHGGF SVLRKHANEC LPPLDMSQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGDNGELR VGVRRLARQQ SPMPSSVISS QSMHLGVLAT ASHAVTTQTL FVVYYKPRTS QFIISLNKYL EAVNYGFAVG MRFKMRFEGE DSPERRFTGT IVGIGDISPQ WSNSKWRSLK IQWDEPATIQ RPERVSSWDI EPFVASASLN LTQPPVKIKR PRPLDLPVAE NTSSSVPSPF WYAGSSPSHE LTQLGGVTEV QSSESQVHWP PKPKEINGNV IHNSNCGSSI GRPEGIWSSS PSVNVSLNLF QDLTEDSKTV STRSILSGYN TSLSSRPNNG LISDQVEKGK RIEASIGCRL FGIDLTNNSK ATALLEMSCP SITSSSVKGP ISAVVSEADR IQNLDVSKSS NEQKQVVPEA SQKETQGRQS CTPSSRTRTK KVQMQGVAVG RAVDLTALEG YDELISELEK MFEIKGELCP RNKWEVVFTD DEGDMMLVGD DPWQEFCKMV RKIFIYSSEE VKKMSPRCKL STSSLDGEGT VISLDSELRT EP // ID F6I7D4_VITVI Unreviewed; 350 AA. AC F6I7D4; DT 27-JUL-2011, integrated into UniProtKB/TrEMBL. DT 27-JUL-2011, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:CCB62852.1}; GN OrderedLocusNames=VIT_07s0255g00070 {ECO:0000313|EMBL:CCB62852.1}; OS Vitis vinifera (Grape). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; Vitales; Vitaceae; Vitis. OX NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183}; RN [1] {ECO:0000313|Proteomes:UP000009183} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183}; RX PubMed=17721507; DOI=10.1038/nature06148; RG The French-Italian Public Consortium for Grapevine Genome Characterization.; RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., RA Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., RA Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., RA Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., RA Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., RA Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., RA Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., RA Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., RA Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., RA Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., RA Weissenbach J., Quetier F., Wincker P.; RT "The grapevine genome sequence suggests ancestral hexaploidization in RT major angiosperm phyla."; RL Nature 449:463-467(2007). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FN596776; CCB62852.1; -; Genomic_DNA. DR EnsemblPlants; VIT_07s0255g00070.t01; VIT_07s0255g00070.t01; VIT_07s0255g00070. DR Gramene; VIT_07s0255g00070.t01; VIT_07s0255g00070.t01; VIT_07s0255g00070. DR InParanoid; F6I7D4; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000009183; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000009183}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000009183}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 61 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 61 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39431 MW; B77AE29AA3EA15EA CRC64; MFLKVPSGAV WQVGLKRGDG EVWLDGGWRE FVEYYSIGYG HFLVFRYEGN SIFHILIFDM TASEIEYPST NAPHYEEPSS NIGGSLPPKM EEIDNDVSVE ILDVFPARQT TKEKDTINIS SSEEEFTPCL PEIVEIESDV SVGTFDVFPT SQNPEEKEVR LFFSPLEKKH NSSRKTDTPP MSDLLFHISA QRIGHDFHAK ESCGTVAAIQ RNVLSGVLPP VTASKEVGAL QRAIAFNPEN PFFRAKMGPS YLGPSRHGLN IPIWFVERYF KTDDKSITLW GSDGRTWSTS YRLGRRRNGK RVAELLYSGW KIFVQDNQLK LGDVCVFVLI KSPGILLKVV IFGNSEDADH // ID G7I382_MEDTR Unreviewed; 619 AA. AC G7I382; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_1g094960 {ECO:0000313|EMBL:AES62145.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES62145.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES62145.1, ECO:0000313|EnsemblPlants:AES62145, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES62145.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62145, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES62145.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES62145} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62145}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES62145.1; -; Genomic_DNA. DR RefSeq; XP_003591894.1; XM_003591846.2. DR EnsemblPlants; AES62145; AES62145; MTR_1g094960. DR GeneID; 11405395; -. DR Gramene; AES62145; AES62145; MTR_1g094960. DR KEGG; mtr:MTR_1g094960; -. DR OMA; IIAKDMH; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 619 AA; 68964 MW; 607DDB3AC5DDDFE3 CRC64; MFVVMDSMEK TSEKCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH NKVDFSKTRV PPLIPCRISA MKYMADPETD EVYVKMKLTP LRENELDFEE DCFFGNNGLE SQEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTIIA KDMHGQCWKF RHIYRGTPRR HLLTTGWSNF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGGIGGGTDQ FSNSSSTWNR VSPLFGGVGS GFLCGNDNRK NGCDDLMGKV GAESVVEAVN CAVNGRSFEV VYYPRASTPE FCVKVSSVKS AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVHVQDPI RWPDSPWRLL QVVWDEPDLL QNVKCVNPWL VELVSNMPNF NLSPFTPPRK KPRFIQDPYF HLMNQSSSPS ISNINLLNYT KSSLCNIQDT TTNSSFASSI QGARHAQFGP NYNNPSDLIP FNKLLQQDMF LGNLSLSRFN QQQPITRPPY GPYKSINNNN NTKTNVDLSC LLSVGNSGQS FKESNIEAKA PHNHNHILLF GKIIHTEQNS SNISKSDSVS EGTSLKTSNA SSSDPVENSS DGGSPWYKDQ QHKSDLVGTE NVTTLCMAS // ID G7I3L8_MEDTR Unreviewed; 131 AA. AC G7I3L8; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Transmembrane protein, putative {ECO:0000313|EMBL:AES59453.1}; GN OrderedLocusNames=MTR_1g019580 {ECO:0000313|EMBL:AES59453.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59453.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59453.1, ECO:0000313|EnsemblPlants:AES59453, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59453.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59453, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59453.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59453} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59453}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59453.1; -; Genomic_DNA. DR RefSeq; XP_003589202.1; XM_003589154.1. DR EnsemblPlants; AES59453; AES59453; MTR_1g019580. DR GeneID; 11411550; -. DR Gramene; AES59453; AES59453; MTR_1g019580. DR KEGG; mtr:MTR_1g019580; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000313|EMBL:AES59453.1}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000313|EMBL:AES59453.1}. FT DOMAIN 41 131 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 131 AA; 14977 MW; 696B392286D7058E CRC64; MNFRVHRIAV PVTPDWVVPR PFVHDVFNFQ LTYEKIMSLY DVTAGYLKLA EFCFAHMALD RETMVIDLVD ENGNVWNCSL QFSETPYADF KIGGGWERLV QARRIKEGAC VVVGAPGVGM NLTLFFCVIR R // ID G7I492_MEDTR Unreviewed; 384 AA. AC G7I492; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 37. DE SubName: Full=AP2/ERF and B3 domain transcription factor {ECO:0000313|EMBL:AES62073.1}; GN OrderedLocusNames=MTR_1g093600 {ECO:0000313|EMBL:AES62073.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES62073.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES62073.1, ECO:0000313|EnsemblPlants:AES62073, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES62073.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62073, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES62073.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES62073} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62073}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES62073.1; -; Genomic_DNA. DR RefSeq; XP_003591822.1; XM_003591774.2. DR EnsemblPlants; AES62073; AES62073; MTR_1g093600. DR GeneID; 11422381; -. DR Gramene; AES62073; AES62073; MTR_1g093600. DR KEGG; mtr:MTR_1g093600; -. DR KO; K09287; -. DR OMA; KHTYLDE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 118 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 192 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 118 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 192 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 384 AA; 41767 MW; 486B832FFD542FCA CRC64; MELGGSSTDE TVTSNDSLSA NLSTPPPTLN SLSRVGSAAS SVVDPEIYGV SGEAESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDIAALRFRG KDAVTNSKSL TGVGNDADEG ETEFLNSHSK SEIVDMLRKH TYDDELKQSM RDMSGGRQRR NGELNGAVSR GACDAKAREQ LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL NAVAVAVACD GVSTAAAAAK GLLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLRAGDAVRF FRSTGPDRQL YIDCKARSIG VVGGQVDNNN NNTGGLFITV RPVVEPVQMV RLFGVNLLKL PGSEGVGGSC NGKRKEMELF ALECSKKPKI IGAL // ID G7I4K0_MEDTR Unreviewed; 596 AA. AC G7I4K0; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES59517.1}; GN OrderedLocusNames=MTR_1g021270 {ECO:0000313|EMBL:AES59517.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59517.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59517.1, ECO:0000313|EnsemblPlants:AES59517, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59517.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59517, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59517.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59517} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59517}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59517.1; -; Genomic_DNA. DR RefSeq; XP_003589266.1; XM_003589218.2. DR EnsemblPlants; AES59517; AES59517; MTR_1g021270. DR GeneID; 11413060; -. DR Gramene; AES59517; AES59517; MTR_1g021270. DR KEGG; mtr:MTR_1g021270; -. DR OMA; FTGRKFR; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59517.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 484 580 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 484 580 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 596 AA; 66666 MW; A9D5C9075EE020C2 CRC64; MGRECKGKLN VRKPHFYHLF NPSSTSQSLR VPDGFVHQME GATCGLVSLT GPSGNTWQVR LVEQDNHLFF HHGWSTFVGD HHLQYGDLLV FRYEGHLHFT VQVFGENACE KEAAFHSECN LNSLTFNNIE GQKSDAEMIS SLDVVGDVQK KMRCDAIENQ EPELAIAGKN QSNYELVRPI SMIRETEETC KECSASAVHV PFQTGNSNEV EDAAILYRSG KEDDHNILSG ASLSKLSAHD EKKIAQSFTS SFPYFVKIIK TFNVSGSYTL NVPYQFSMSH FPNCKTKIIL YNLKGEHWTV NSVPTTRVHT SHTLCGGWMA FVRGNSIKVG DVCIFELIRE CELRVRIAEV GKDGLDCQVG KLACSMLSER HDVASHNTSR YMPKKPKVSS KCRTKVDLSD KKLSKIGQEP VLAIEFKKSG RASTTSKKMG LSPKSKASHK KTAVPRKHRV EDELSSQAKA GLRMLFALDE QRVAEAFTSP FPNFVKIMKK FNVSGSYTLK IPYQFSAAHL PAYKTEVTLR NSRGQCWIVN SVPDAKGRTI HTFCGGWIAF VRDNDINFGD TCIFELVSHY VMQVHISGVG KEGLDHQIGH AKLNNM // ID G7I4K2_MEDTR Unreviewed; 347 AA. AC G7I4K2; A0A0C3UK82; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 34. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59519.2}; GN OrderedLocusNames=MTR_1g021290 {ECO:0000313|EMBL:AES59519.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59519.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59519.2, ECO:0000313|EnsemblPlants:AES59519, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59519.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59519, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59519.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59519} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59519}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59519.2; -; Genomic_DNA. DR RefSeq; XP_003589268.2; XM_003589220.2. DR EnsemblPlants; AES59519; AES59519; MTR_1g021290. DR GeneID; 11419208; -. DR Gramene; AES59519; AES59519; MTR_1g021290. DR KEGG; mtr:MTR_1g021290; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59519.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 39361 MW; 67524C805B3A59A1 CRC64; MEGTQNCVGS TKSLEELIYW THFQFIHFTL FLSITDFHHQ LALPKTFSDN LKKKLPENVT IKCPSGIVWN IGLTARGDTV YFTNSWQQFV KDHSLKENDF LVFKYNGESH FEVLIFNGNS FCEKAASYFV QKCGQAHSPS SGGVEDIYWS YFKFTHFTLL VHTNFERHLA LPKTFSDNLN KKLPENVTLK GPSGVTWNIR LTTRDGFVYF VDGWQQFMND HSLKANDFLV CKYNGESHFE VLIFDGESFC EKEASYFVEK CGHAQTAQGG SNASETNNSI EEVDTDSNGG DSPEQFTDDA VPKTTAIQSP FIPTGKRTKR RRRSPKAAAN WGARAHAWVT CNKQHPG // ID G7I4K4_MEDTR Unreviewed; 842 AA. AC G7I4K4; A0A0C3UK84; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 32. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59521.2}; GN OrderedLocusNames=MTR_1g021320 {ECO:0000313|EMBL:AES59521.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59521.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59521.2, ECO:0000313|EnsemblPlants:AES59521, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59521.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59521, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59521.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59521} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59521}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59521.2; -; Genomic_DNA. DR RefSeq; XP_003589270.2; XM_003589222.2. DR EnsemblPlants; AES59521; AES59521; MTR_1g021320. DR GeneID; 11411561; -. DR Gramene; AES59521; AES59521; MTR_1g021320. DR KEGG; mtr:MTR_1g021320; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59521.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 181 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 506 602 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 827 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 181 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 506 602 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 730 827 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 842 AA; 94096 MW; 9BC8E36B061CC4B3 CRC64; MGGAGGSSKS WEKEIYWTHF QFIHFIQFLQ TTTDFQQQLA LPKTFSDNLK KKLPGNVTLK GPSGVVWNVG LTARDDTIYF TNGWQRFVKD HSLKENDFLV FKYNGESLFE VLIFHGDSFC EKAASYFVGK CGQAHTEQVC NKGKSSNNSV EEVSTPSNGS VECSLPEKSW EEDIYWTHFQ FIHFTQLLPE DFKQQLALPK TFSDNLNKKL PENVTLKGPG GVAWKIGLIT RDDTVYFLNG WQRFVNDHSL KDNDFLVFNY NGESHFDVLI FDGESFCEKE ASYFVGKCSH TQTELGGSKA NETNNSIEEV NTASSDGGVE CGLYEKFQDL NNIGTPLAVP VETTNEKTFN AGVESDSPEL LIADTVTKTT AIQFPYQPTG KRSKRRRSST SANCCWRALD RVAYNKQHSV TIAVPSQTTG QKTKKPVNEV TPGRSMKRGR QAKTATSGER SIDWVACNKE NSEAANLNRS GKADGHDILS GASLSKLSPH AEKEIAQSFT SSFPYFVKIM KTFNVERPRI LNIPYEFSKD HLPNCKIKIT LHNLKGEQWT VNSVPRTRLH ASHILCGGWL NFVRGNSLKI GDVCIFELIG ECELRVRINE VGKDGLDSQV GKLACRLDVA SHKTSRFMPK KHKISSKCCA EVDLLDKKLS EICQEAALSS ELKKSVRASN TSKKAGLSPK SKASHKKPAV PRKHRIEDAL SSQANDSLKM LFALDEQRVA EAFTSPFPYF VKIMKKFNVC GSYTLKIPCQ FSTAHLPARN TEVTLRNSRG KCWTVNSVPY VQGETTIHTF CGGWNAFVRD NDINFGDTCI FELVSDYIMQ VRISGVGKEG LDHQNGNVKL TS // ID G7I4K5_MEDTR Unreviewed; 385 AA. AC G7I4K5; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59522.1}; GN OrderedLocusNames=MTR_1g021330 {ECO:0000313|EMBL:AES59522.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59522.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59522.1, ECO:0000313|EnsemblPlants:AES59522, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59522.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59522, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59522.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59522} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59522}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59522.1; -; Genomic_DNA. DR RefSeq; XP_003589271.1; XM_003589223.2. DR EnsemblPlants; AES59522; AES59522; MTR_1g021330. DR GeneID; 11420399; -. DR Gramene; AES59522; AES59522; MTR_1g021330. DR KEGG; mtr:MTR_1g021330; -. DR OMA; EANSWES; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59522.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 264 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 264 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 385 AA; 43382 MW; 07094221E2DF9EB5 CRC64; MGEGRTQNSK SWEEEIYWSH FQFIHFTIFL QSTTDFQQQL ALPKIFSDNL KKKLPENVTL KGPSGVVWNI GLNTRGESVY FVDGWRRFVK DHSLKENDFL VFKYNGESLF EVLIFNGESF CEKAASYFVL ECGQAHAEQG GNKGKNSNKS VEEVNTTNGS VECASPEKFR SLDSIRTPLA LTFETTNGKT FNAGFKSASP EKPVIEVTPV QTKKRARTPK EANSWESACN KEHSEAALSK LSRKLSRNDE EKIVQSFSSS VPYFVKIIKT FHVSGSCVMN IPRQFSMEHL KKGRIKIILH NMKGECWIVN SVPTAKVPKS HTLCAGWMSF VHANNIKIGD VCIFELINDC ELRVRIAGVG KEGLDCQVGK EGLDHQNEHM KLNSI // ID G7I4K7_MEDTR Unreviewed; 348 AA. AC G7I4K7; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59524.1}; GN OrderedLocusNames=MTR_1g021350 {ECO:0000313|EMBL:AES59524.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59524.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59524.1, ECO:0000313|EnsemblPlants:AES59524, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59524.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59524, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59524.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59524} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59524}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59524.1; -; Genomic_DNA. DR RefSeq; XP_003589273.1; XM_003589225.2. DR EnsemblPlants; AES59524; AES59524; MTR_1g021350. DR GeneID; 11420401; -. DR Gramene; AES59524; AES59524; MTR_1g021350. DR KEGG; mtr:MTR_1g021350; -. DR OMA; QINCLEM; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59524.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 323 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 323 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39293 MW; A1901CA10AA84FA9 CRC64; MGSGRRSREE EIYWNHFQFI HFTLFLSTTH FQQQLALPKT FSDNLKKKLP ENVTLKGPSG VVWNIGLTTR NDTVYFMDGW QRFVKDHSLK ENDFLVFKYN GESLFEVLIF NGESLCEKAA SYFVLECGQK SILLPNGGVE CASPEKFRRT RTPFAVPFET TNGKTFNAGI ESASSKKCMA DALTKTTTIQ FPFQPTGKRT KKKPVKEAVP VKTKKRGRPP KDGNSSKRAL DLKACNKEHS ECTLWISMAH LPKGNIQIIL HNLKGERWTV NAVAIAKGRH KTSHILSAGW ITSVRANSIK IGDVCIFELI DESELRVRIA EVGKDGLDYQ VGKEGLDHQN EHMKLNSM // ID G7I4K8_MEDTR Unreviewed; 478 AA. AC G7I4K8; A0A0C3UK88; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59525.2}; GN OrderedLocusNames=MTR_1g021360 {ECO:0000313|EMBL:AES59525.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59525.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59525.2, ECO:0000313|EnsemblPlants:AES59525, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59525.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59525, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59525.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59525} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59525}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59525.2; -; Genomic_DNA. DR RefSeq; XP_003589274.2; XM_003589226.2. DR EnsemblPlants; AES59525; AES59525; MTR_1g021360. DR GeneID; 11422470; -. DR Gramene; AES59525; AES59525; MTR_1g021360. DR KEGG; mtr:MTR_1g021360; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59525.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 181 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 374 470 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 181 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 374 470 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 478 AA; 54491 MW; 44283A17667F6937 CRC64; MGGTQNSSSR SWEEDIYWTH FQFIRFTQFL QPTHLEQQLA LPKTFSDNLK NKLPANVTLK GPSGVVWDIG LTTRDDTIYS TDGWQQFVKD HSLKQNDFLV FKYNGESLFE VLIFHGESFC EKAASYFILE RGQAHTGQRG RKAKDTNTSV EEVNTPSNGS VECGLPEKSW EEDIYWTHFQ FIHFTQFLRA DFEQQLALPK TFSDNLKKKL PENVTLKGPS GVVWNIGLTT RDDIVYFVDG WKRFIKDHSL KQNDFLVFKY NGKSLFEVLI FDGDSFCEKA ASYFVGKCGN AQIEQGGRKA KDTNKSVSPE QFLADAVPSQ TNGKRTKKRP VNEVTPLQTK RGRRPKAEAA LSKLSSSHAE KKIAESFTSS FPYFVKMIKT FNVDGPRILN VPHQFSKAHL PNRKIKIILH NLKGEQWTVN SVPTTRVNTD HTLCGGWVNF VRGNNIKVGD VCIFELIHEC ELRVRVAEVG KDDSRLEN // ID G7I4K9_MEDTR Unreviewed; 350 AA. AC G7I4K9; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59526.1}; GN OrderedLocusNames=MTR_1g021380 {ECO:0000313|EMBL:AES59526.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59526.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59526.1, ECO:0000313|EnsemblPlants:AES59526, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59526.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59526, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59526.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59526} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59526}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59526.1; -; Genomic_DNA. DR RefSeq; XP_003589275.1; XM_003589227.1. DR EnsemblPlants; AES59526; AES59526; MTR_1g021380. DR GeneID; 11419209; -. DR Gramene; AES59526; AES59526; MTR_1g021380. DR KEGG; mtr:MTR_1g021380; -. DR OMA; GSSWRID; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59526.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39567 MW; AE5E2A78318EC789 CRC64; MEDSSRSLEE NIYWNHFQFI HFAQFLHSTD FEQQLALPRT FSDNLKKKLP ENVTLKGPSG VEWNVGLQTR DNTVYFVDGW HQFARDHSLK ENDFAVFKYN GESLFNVLIF QGESFCEKAA SYFVGLREKE TNKSVEEVNT VLNAGVESAS PEQFTANAVT IVLPSQSTGK RTKQPVNEVT PVQTKKRGRP PKKANCSLER EVHDYDLVAC NKEHSEASIS GKEDEKKIAH LFTSSFPYFV MIMKSCNISG SRTLRIPCHF SATHLPDCKT EVTLRNARGE CWNVNSIPVG ATHTFCGGWM AFVRDNGINL GDTIIFELVS NFVMKVYISG VGKEGLDYQN YKRAQKCACL // ID G7I576_MEDTR Unreviewed; 368 AA. AC G7I576; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59528.1}; GN OrderedLocusNames=MTR_1g021400 {ECO:0000313|EMBL:AES59528.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59528.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59528.1, ECO:0000313|EnsemblPlants:AES59528, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59528.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59528, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59528.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59528} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59528}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59528.1; -; Genomic_DNA. DR RefSeq; XP_003589277.1; XM_003589229.2. DR EnsemblPlants; AES59528; AES59528; MTR_1g021400. DR GeneID; 11419210; -. DR Gramene; AES59528; AES59528; MTR_1g021400. DR KEGG; mtr:MTR_1g021400; -. DR OMA; CEIKKTR; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59528.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 256 352 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 256 352 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 41115 MW; 0EF9E30850156144 CRC64; MGGRDDGQNW DGSRSWEEDI YWTHFQFIHF TQFLQTTTNF QQQLALPKTF SDNLKKKLPE NVTLKGPSGV VWNIGLTTRD NTVYFVDGWQ QFVNDHSLKE NDFLVFKYNG ESLFEVLIFD GNSFCEKATS YFVGKCGHAQ TEQGDSKAKD NNTSAFNAGV ESASPQVADV VAKTTPAAVP SQTTSKRTKK KPVIEVTPVQ TKKRGRPPKS DDSGEKLLRD LVACNKEHSE ASTLDRIRKE DEKKIAESFT SSFPYFVKIL KAGNVGGSRT LRIPYHFSAA HLPDFKIEVT LRNSKGKCWT VNSVPCAKGK IIHSFCGGWM AFVRDNGVNF GDTCIFELVT NYVMQVYIFG SGKEGADNQN GHVKLDSV // ID G7I577_MEDTR Unreviewed; 361 AA. AC G7I577; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59529.1}; GN OrderedLocusNames=MTR_1g021410 {ECO:0000313|EMBL:AES59529.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59529.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59529.1, ECO:0000313|EnsemblPlants:AES59529, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59529.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59529, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59529.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59529} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59529}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59529.1; -; Genomic_DNA. DR RefSeq; XP_003589278.1; XM_003589230.2. DR EnsemblPlants; AES59529; AES59529; MTR_1g021410. DR GeneID; 11414253; -. DR Gramene; AES59529; AES59529; MTR_1g021410. DR KEGG; mtr:MTR_1g021410; -. DR OMA; HHSEMRC; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59529.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41123 MW; 1196CE2A0BBB6220 CRC64; MEEDGSRSWE EDIYWNHFQF IHFTLFLSTF DFQQQLALPK TFSDNLKNKL PENVTLKGPS GVVWNIGLTT RDYTVYFTDG WQRFVKDHSL KENDFLVFKY NGESLFEVLI FDRDNFCEKA TSYFVGKCGH AQTEQEGSKA KNNNTSAFNT GVESASPEQI MADAVTKTTP VAVPSQKTSK RTKKKPVIEV TPVQTKKRGR PPKSANSFER SHDLVVCNKE LSESSIVKRK RKEDEKKIAQ SFTSSFPYFV KILKNGNVGG SRTLRIPRRF SAAHLPDDKT EVTLRNSRGE CWTVNSVPYA KRGMLHTFCG GWMSFVRDNG VNFGDTCIFE LVSDYVMQVH IYGVGKESIN NQNGHVKLDN K // ID G7I578_MEDTR Unreviewed; 399 AA. AC G7I578; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59530.1}; GN OrderedLocusNames=MTR_1g021440 {ECO:0000313|EMBL:AES59530.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59530.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59530.1, ECO:0000313|EnsemblPlants:AES59530, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59530.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59530, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59530.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59530} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59530}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59530.1; -; Genomic_DNA. DR RefSeq; XP_003589279.1; XM_003589231.2. DR EnsemblPlants; AES59530; AES59530; MTR_1g021440. DR GeneID; 11417208; -. DR Gramene; AES59530; AES59530; MTR_1g021440. DR KEGG; mtr:MTR_1g021440; -. DR OMA; IEHESSE; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59530.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 281 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 281 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 44908 MW; 3CDAA02AC8674D04 CRC64; MEVDGSRSWE EDIYWNNFQF IHFTQFLQTT DFQQQLALPK TFSDNLKKKL PENVTLKGPS GAVWDIGLTT RDNTVYFVGG WERFVKDHSL KENDFLVFKY NGESLFEVLI FDGDNFCEKA TSYFVRKCGH AQTEEGGSKV KNTNTSVEEV NTASNGGVDC GSPETFRVRR LDSIRTPLAV PVKTTDKMTL NAFFESASPK ELPVYFPKQP TGQRTKKPAN EVTPGQTKKR GRPPKEGNSR EGALDLRASN KEHSEAAQSR LSSAKDEKKL AQSFTSTFPY FVKIIKTFNV DGPRILNVPH QFSIAHLPNG KIKIILRNLK GEQWTANSVP RSRVHTSHTL CGGWMSFVRA NNIKLGDVCV FELINDCELR VRVAEVDEDG LVSEVQKEGI DHQNGSCET // ID G7I584_MEDTR Unreviewed; 491 AA. AC G7I584; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59536.1}; GN OrderedLocusNames=MTR_1g021500 {ECO:0000313|EMBL:AES59536.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59536.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59536.1, ECO:0000313|EnsemblPlants:AES59536, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59536.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59536, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59536.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59536} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59536}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59536.1; -; Genomic_DNA. DR RefSeq; XP_003589285.1; XM_003589237.2. DR EnsemblPlants; AES59536; AES59536; MTR_1g021500. DR GeneID; 11414255; -. DR Gramene; AES59536; AES59536; MTR_1g021500. DR KEGG; mtr:MTR_1g021500; -. DR OMA; FWTHFQS; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59536.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 394 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 394 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 491 AA; 54499 MW; 814E6A05A7FEC0A3 CRC64; MGLQNGGGCS RSWEEDIYWT HFQFIHFTQF LRSNDFDQQL ALPKTFSNNV KKKLPENVVL KGPGGVTWNI GLTSRDGTFY FTQGWEQFVK DHFFERERLP FSVEKAAAYF VRKCGHAEAA AQTEQGGGCS SKGRETNNSV DEVNTPSNGV DEGVSHEKSL HLNSIRVPFA VPSETTNGKT SNAAVESATP EQLMSDAAVT ETEPTAVPSQ TTGKRTRRPV YAVPSVPSKK RGRPPRTSNS QEKALNWVTD AGPAPASPKG SPKTQELYTS NRRPVTKDEI EKTLQVAQAA CTEESLLVTM RPSHVYKRFF VSFPNKWILN HLAPSSQDVI LRMGKNEWLG KYCYHNIRNN GGLTGGWKYF ALDNNLEEFD VCLFKPAGHL HDILILEMSI FRVVEEITPL TAVHSPGKKR GLSSTGKKRG VKRTLTSAAQ TELEAIEGAE TDDQGLQQAD DDELLSQIRA KRNIVKSSKY LKDYVIPKKK TSLDLEGTSA S // ID G7I585_MEDTR Unreviewed; 439 AA. AC G7I585; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES59538.1}; GN OrderedLocusNames=MTR_1g021500 {ECO:0000313|EMBL:AES59538.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59538.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES59538.1, ECO:0000313|EnsemblPlants:AES59538, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES59538.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59538, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES59538.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES59538} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59538}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES59538.1; -; Genomic_DNA. DR RefSeq; XP_003589287.1; XM_003589239.2. DR EnsemblPlants; AES59538; AES59538; MTR_1g021500. DR GeneID; 11414255; -. DR Gramene; AES59538; AES59538; MTR_1g021500. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES59538.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 394 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 394 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 439 AA; 48677 MW; 73462CE3FAF759FC CRC64; MGLQNGGGCS RSWEEDIYWT HFQFIHFTQF LRSNDFDQQL ALPKTFSNNV KKKLPENVVL KGPGGVTWNI GLTSRDGTFY FTQGWEQFVK DHFFERERLP FSVEKAAAYF VRKCGHAEAA AQTEQGGGCS SKGRETNNSV DEVNTPSNGV DEGVSHEKSL HLNSIRVPFA VPSETTNGKT SNAAVESATP EQLMSDAAVT ETEPTAVPSQ TTGKRTRRPV YAVPSVPSKK RGRPPRTSNS QEKALNWVTD AGPAPASPKG SPKTQELYTS NRRPVTKDEI EKTLQVAQAA CTEESLLVTM RPSHVYKRFF VSFPNKWILN HLAPSSQDVI LRMGKNEWLG KYCYHNIRNN GGLTGGWKYF ALDNNLEEFD VCLFKPAGHL HDILILEMSI FRVVEEITPL TAVHSPGKKR GLSSTGKKRG VKRTLTSAAQ TELEAIEGA // ID G7IAW3_MEDTR Unreviewed; 461 AA. AC G7IAW3; A0A0C3UUP6; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 37. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:AES62834.2}; GN OrderedLocusNames=MTR_1g108780 {ECO:0000313|EMBL:AES62834.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES62834.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES62834.2, ECO:0000313|EnsemblPlants:AES62834, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES62834.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62834, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES62834.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES62834} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62834}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES62834.2; -; Genomic_DNA. DR RefSeq; XP_003592583.2; XM_003592535.2. DR EnsemblPlants; AES62834; AES62834; MTR_1g108780. DR GeneID; 11419551; -. DR Gramene; AES62834; AES62834; MTR_1g108780. DR KEGG; mtr:MTR_1g108780; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 406 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 406 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 461 AA; 53607 MW; 885E740F9B1F1960 CRC64; MHANINFNVL QRIPNAFTEK YIGDLSKPMF LKTPDVKEWE IHLTKKDGDI WIQRGWKEFA THYSLDHGHM VLFQYQKTSH FEVYIFDKST FEIEYRVDGN NQHEQSNPIE ILDEQPSYKK SRPKSQISSS QPLKKLRIDA SEDVGTSSKS QNIPKLVQVK EEIDSTTKCL NVKHGQEQRN STAKIVEALN KAKNYESNNP FFTAIMTYSY VNQYMHVPLN FEQKYLKEQQ SEIALQVLDD ERTWIVKYCL RKMSNGWKTF VSDNNLKLGD VCLFEMINSK SYAFKVLIFR VDEEQHSLPP QVHGDGVNWL ETAGITEVKS KTIMSYKGTK ETQRNSLQAR PCSFKNSEAK KEANQFTSTL EKPNFTINLR SSHWDVYRPR VRNSFSSKYL GPKKKTAMLQ FEEKLWPVQL MYYPSEPATK LGEGWSLFVE ENKLQAGDVC VFVLANKEDV VLDVHIFRGR S // ID G7IB22_MEDTR Unreviewed; 298 AA. AC G7IB22; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=AP2/ERF and B3 domain transcription factor {ECO:0000313|EMBL:AES63108.1}; GN OrderedLocusNames=MTR_1g116920 {ECO:0000313|EMBL:AES63108.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES63108.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES63108.1, ECO:0000313|EnsemblPlants:AES63108, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES63108.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63108, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES63108.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES63108} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63108}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES63108.1; -; Genomic_DNA. DR RefSeq; XP_003592857.1; XM_003592809.2. DR EnsemblPlants; AES63108; AES63108; MTR_1g116920. DR GeneID; 11446763; -. DR Gramene; AES63108; AES63108; MTR_1g116920. DR KEGG; mtr:MTR_1g116920; -. DR KO; K09287; -. DR OMA; METIMIM; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 93 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 162 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 93 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 162 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 34608 MW; FB73F417081616B0 CRC64; MLSNWRINGS YESSESTKIN YGVKRRRYEV EDVAGCEKLK GVVPQQNGHW GAQIYANHQR IWLGTFKSER DAAMAYDSAT IKLRSRESHR NFAWNNQTVQ EPMFQSQYSM ETIMIMIRNG TYPSNFATTF LRNNERRQGA GKEGVVIGVK DEEQFSCTQL LFQKELTPSD VGKLNRLVVP KKHAVTYFPL VCGNDVEVVF YDKLMRLWKF RYCYWKSSQS YVFTRGWNRF VKDKKLKAKD TIVFYRCEPI NLTNNNGERL PLSLIDVIYS DIDGNNKKIH SFEDAKHGGL RLFGVSIS // ID G7IBX1_MEDTR Unreviewed; 318 AA. AC G7IBX1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES62325.1}; GN OrderedLocusNames=MTR_1g098450 {ECO:0000313|EMBL:AES62325.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES62325.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES62325.1, ECO:0000313|EnsemblPlants:AES62325, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES62325.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62325, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES62325.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES62325} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES62325}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001217; AES62325.1; -; Genomic_DNA. DR RefSeq; XP_003592074.1; XM_003592026.1. DR EnsemblPlants; AES62325; AES62325; MTR_1g098450. DR GeneID; 11420353; -. DR Gramene; AES62325; AES62325; MTR_1g098450. DR KEGG; mtr:MTR_1g098450; -. DR OMA; WISEERA; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES62325.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 252 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 252 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 318 AA; 37071 MW; DCE22439ADC29B30 CRC64; MIFQVSESDT KFCKIIDEDC LGNDDLMITA LSSKFWDYIS SPVCLQLPDK TTWLLDWKQH DDTHVLFNKW KAFAEPHIYP INIFNLSIFD ETDTEIEYPM LSSLFSPWET KTTKPAVSLY HLNRMKKTNQ QEEPKGYLSL LAEICGQSPS QMTMPVEYAD FYTANPKKRG RRREVPYNTR GSSTMKQRKV LGTGALERAK ACCSHIKSFI RQMRPSHIQR NVLVIPRNFL TTRQQQESAM FWIVEAKRFC DGWKNFVTDN KLKQGDVCVF QLVEAPRLFF EVVIFRAREQ STPPHIQGTF DLLQSNLQFL MHTYILAP // ID G7IL56_MEDTR Unreviewed; 671 AA. AC G7IL56; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g005240 {ECO:0000313|EMBL:AES63125.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES63125.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES63125.1, ECO:0000313|EnsemblPlants:AES63125, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES63125.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63125, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES63125.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES63125} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63125}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES63125.1; -; Genomic_DNA. DR RefSeq; XP_003592874.1; XM_003592826.2. DR EnsemblPlants; AES63125; AES63125; MTR_2g005240. DR GeneID; 11423560; -. DR Gramene; AES63125; AES63125; MTR_2g005240. DR KEGG; mtr:MTR_2g005240; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 640 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 671 AA; 74980 MW; C10A4F5DD3FE1C50 CRC64; MASNHMSAVT SRAGSTNDAL YKELWHACAG PLVTLPREGE RVYYFPQGHM EQLEASMNQG LEQQMPSFNL PSKILCKVVN IHLRAEPETD EVYAQITLLP ETDQSEVTSP DDPLPEPPRC TVHSFCKTLT ASDTSTHGGF SVLRRHADDC LPPLDMTQQP PWQELVATDL HGNEWHFRHI FRGQPRRHLL TTGWSVFVSS KKLVAGDAFI FLRGENGELR VGVRRLMRQQ SNMPSSVISS HSMHLGVLAT ASHAISTGTL FSVFYKPRTS RSEFIVSINK YLEARNHKLS VGMRFKMRFE GDEVPERRFS GTIVGVEDNK SSVWADSEWR SLKVQWDEPS SILRPDRVSP WELEPLVSTP PANSQPTQRN KRSRPPILPS TMTDSSLQGI WKSPADSPPF PYRDPQHGRD LYPSPRFSST ATSFLGFGGN SPASNKSMYW SSRLENSTEP FSPVALEESG EKRQGTGNGC RLFGIQLLEN SNAEESLQTA PLSGRVGDDR SVPSLDVESD QHSEPSNVNR SDIPSVSCDA DKSCLRSPQE SQSRQIRSCT KVHMQGMAVG RAVDLTRFDG YEDLLRKLEE MFDIEGELCG ATKKWLVVYT DNEDDMMMVG DDPWLEFCSV VRKMFIYTPE EVKKLSPKIG LPSNEEGKPS KLDSEAVVNP EDRSSIVGPG C // ID G7ILC5_MEDTR Unreviewed; 888 AA. AC G7ILC5; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:AES63685.1}; GN OrderedLocusNames=MTR_2g011940 {ECO:0000313|EMBL:AES63685.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES63685.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES63685.1, ECO:0000313|EnsemblPlants:AES63685, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES63685.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63685, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES63685.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES63685} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63685}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES63685.1; -; Genomic_DNA. DR RefSeq; XP_003593434.1; XM_003593386.1. DR UniGene; Mtr.24767; -. DR EnsemblPlants; AES63685; AES63685; MTR_2g011940. DR GeneID; 11434350; -. DR Gramene; AES63685; AES63685; MTR_2g011940. DR KEGG; mtr:MTR_2g011940; -. DR OMA; CASAYEQ; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 344 445 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 571 621 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 344 445 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 723 744 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 888 AA; 97873 MW; F748DA6CFD1328E0 CRC64; MASSSVPSSS SSSISSSTLK RCFNSDCKDF RSTKKGWRLR TGDLAQLCDR CGSAFEEGRF CDIFHANTSG WRNCETCRKR IHCGCIVSSS TFVLLDPGGI ECFTCARKNV ILPSNLPWPQ SLSLTNRLSE RYRDMSGKSW SQLAGSGPVP WKQAPSLFNS ASSSDQPPAV HSLVDLSNNF DKIYGNERLP PSSLEKKNED LAGISANWNV KLGSSEMVLM NGMRNEDKSG PCLNMCQQPH TLKEDSSSQP FGLSVPYSSP NERNGQIGVT GIHPQQTPPH LGKQFGGTMH LPLDSSGEAQ VRNGRPRADA RGRSQLLPRY WPRCTELELQ QISVDSNSVI TPLFQKTLSA SDAGRIGRLV LPKKCAETYF PPISQPEGLP LKILDAKGKE WIFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR LEPEGRLVMG FRKATNPLPS DQDNEANKTG NGFSAPEVEL ADPSSWSNVD KSGYIAKEAL GSKSLISRKR KNNILGSKSK RLKIENEDII ELKITWQEAQ GLLRPPPNHV PSIVVIEGFE FEEYEDAPVL GKPSIFTSDN MGERIQWARC EDCLKWRKLP ACALLPAKWT CSDNSWDPER SSCSAAQELT TEQLENLLPP CNSVSKKMKA TKQDPDHAEA LEGLDTLANL AILGEGEALP SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFRTL MLRREKKQSE KEAETTRKKQ QQQNFQQLPS SEILLDDDSL HNSNTGDSSP TMNKEGNDGS DDDPHRIKSS VSPFKGQIDL NIQPEREEEL SPGSDSGGVM KLLHDAAAEM YLKQQQTLLN SGTGDSSGSQ SQQVGDVVRE VKLSNGVIHG SSSHNADKEH AQSLSMNV // ID G7IMD4_MEDTR Unreviewed; 410 AA. AC G7IMD4; A0A0C3V9K5; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 33. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES68049.2}; GN OrderedLocusNames=MTR_2g102450 {ECO:0000313|EMBL:AES68049.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES68049.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES68049.2, ECO:0000313|EnsemblPlants:AES68049, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES68049.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68049, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES68049.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES68049} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68049}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES68049.2; -; Genomic_DNA. DR RefSeq; XP_003597798.2; XM_003597750.2. DR EnsemblPlants; AES68049; AES68049; MTR_2g102450. DR GeneID; 11431557; -. DR Gramene; AES68049; AES68049; MTR_2g102450. DR KEGG; mtr:MTR_2g102450; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000002051; Chromosome 2. DR ExpressionAtlas; G7IMD4; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES68049.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 46488 MW; 9EA209961A21D8C2 CRC64; MAKGCSTTSN NYEAAREQRL VENKKRFEDL GISKISKTLT EIASPAKKST NRLFRPKSKT NVVLEPRRSS RARNSVPSYA EEFGTDLPQL RRRARSSSSW GSYAYAARPL DEIKVATAQE RKRAWDAAEA LQINLQSSNP IFIKSMLRSH VYSCFWLGLP SRFCVEHLPK TDYTMVLEDE KGLEYDAVYL ARKTGLSGGW RGFALEHKLD DGDAVVFELV EAARFKVYIV RAFENIDEEE EKEESDALVE DGNMCTSKTI KKSETVKPKE ATKKTRMQKV SKVPTHEPKS ETVKSEETSR TTRSSHKKQK ISDVSTAIEP KEDAHLETVK PEAATKLPNK KRKAKEGDVS KKILLEDNAK AMKTDSERKE EPVEDVDVEL KKVKLDDKAS KPAAEKPRKI RAPKFFRKRG // ID G7INP6_MEDTR Unreviewed; 456 AA. AC G7INP6; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g006270 {ECO:0000313|EMBL:AES63224.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES63224.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES63224.1, ECO:0000313|EnsemblPlants:AES63224, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES63224.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63224, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES63224.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES63224} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63224}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES63224.1; -; Genomic_DNA. DR RefSeq; XP_003592973.1; XM_003592925.1. DR EnsemblPlants; AES63224; AES63224; MTR_2g006270. DR GeneID; 11419766; -. DR Gramene; AES63224; AES63224; MTR_2g006270. DR KEGG; mtr:MTR_2g006270; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 216 246 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 456 AA; 51921 MW; 84FBE941D87AB62F CRC64; MSLQKQPSHV RPEIWHTCAT AAVKIPKLHS RVYYFPQGHL ENASPSSSSI THTHSFLQSF RPFTLCIVSA VDLLADPHTD EVFVKLLLTP ITNDVHLENP KEEVANLNDR NEVVSFVKTL TRSDVNNARS FHIPRFCADN VFPQLDLEAE SSSQHLFVTD VHGEVSKFYH VCRGFPKRNM LYISEWNSFV KRKKLVAGDS VIFMKDSTGK IFVGIRRNTQ FVAAAAEQKK DELEKAVMEA LKLAEENKAF EIVYYPQGDD WCDFVVDGNV VDESMKIQWN PRMRVKMKTD KSSRIPYQGT ISIVSRTSNL WRMLQVNWDE FQVSQIPRRV NPWWVELISH KPAPTPFPQT KKFRTTQSSA QLSDKKETLL NGDGFPVDIQ RVRHDLVSIS GPIHSHIILN SSETKFPATH NCNTKNDSDG SIMLFGKIIQ PHVSNFHNSH IKGDDGYKSC GFGVKN // ID G7INQ9_MEDTR Unreviewed; 456 AA. AC G7INQ9; DT 01-OCT-2014, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 1. DT 05-JUL-2017, entry version 20. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g006380 {ECO:0000313|EMBL:AES63237.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES63237.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES63237.2, ECO:0000313|EnsemblPlants:AES63237, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES63237.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63237, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES63237.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES63237} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63237}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES63237.2; -; Genomic_DNA. DR RefSeq; XP_003592986.2; XM_003592938.2. DR EnsemblPlants; AES63237; AES63237; MTR_2g006380. DR GeneID; 11429216; -. DR Gramene; AES63237; AES63237; MTR_2g006380. DR KEGG; mtr:MTR_2g006380; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 225 248 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 456 AA; 52062 MW; CAF5B6BB85A48912 CRC64; MSLNQYHHQQ QQQPSHVHPQ IWQTCTGAAV QIPKLHSRVY YFPQGHLEHA SSSSSNAYIH SLDLQRFRPF TICIISAVDL LADPHTDEVF AKLLLTPVTN NSCVQDPHEV PNCSNDDDVC DEVIDSFTRI LALTNVSKHA FYIPRFCAEN MFPPLGMEVS QHLLVTDVHG EVWKFHHVCH GFAKRNVFYT SEWASFVERK KLDVGDAVVF MKNSTGKLFV GIRRKDAAEQ KKDELEKAVM EAVKLAEENK PFEIVYYPRG DDWCDFVVDG NIVDESMKIQ WNPRMRVKMK TDKSSRIPYQ GTITTVSRTS NLWRMLQVNW DEFQISQISR RVSPWCVELH KPAPTPFPQT KKFRTTQSSA QLSDKKETLL NDDGFPVDIQ RVRHDLVSIS GPIHSHIILN SSETKFPATH NCNTKNDSDG SIMLFGKIIQ PHVSNFHNSH IKGDDGYKSC GFGVKN // ID G7INX6_MEDTR Unreviewed; 122 AA. AC G7INX6; A0A0C3UX99; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 30. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES63738.2}; GN OrderedLocusNames=MTR_2g012700 {ECO:0000313|EMBL:AES63738.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES63738.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES63738.2, ECO:0000313|EnsemblPlants:AES63738, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES63738.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63738, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES63738.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES63738} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES63738}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES63738.2; -; Genomic_DNA. DR RefSeq; XP_003593487.2; XM_003593439.2. DR EnsemblPlants; AES63738; AES63738; MTR_2g012700. DR GeneID; 11423602; -. DR Gramene; AES63738; AES63738; MTR_2g012700. DR KEGG; mtr:MTR_2g012700; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES63738.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 14082 MW; E2F734EBB9077393 CRC64; MNEIGVEDNG TDLENVQNVD VHYWKYNVTT SILDGNNVLH FPRRVAENGL YINQSKILLF DEETDKSYDC DVHTTSKSMH QKYIGRGWYD FVLEKGLKVG DVILLTVNNP PNRMYAAVVN WE // ID G7IP35_MEDTR Unreviewed; 908 AA. AC G7IP35; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g018690 {ECO:0000313|EMBL:AES64120.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES64120.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES64120.1, ECO:0000313|EnsemblPlants:AES64120, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES64120.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES64120, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES64120.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES64120} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES64120}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES64120.1; -; Genomic_DNA. DR RefSeq; XP_003593869.1; XM_003593821.2. DR EnsemblPlants; AES64120; AES64120; MTR_2g018690. DR GeneID; 11446854; -. DR Gramene; AES64120; AES64120; MTR_2g018690. DR KEGG; mtr:MTR_2g018690; -. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 775 859 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100827 MW; 9AEE9032C8A22C9E CRC64; MRLSSASFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLNAQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIC DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD DFGMSSPLMW LRDTDRGLQS LNYQGIGVNP WMQPRFDPAM LNMQTDMYQA VAAAALQDMR TVVDPSKQLP GSLLQFQQPP NFPNRTAALM QAQMLQQSQP QQAFQNNNQE NQNLSQSQPQ AQTNPQQHPQ HQHSFNNQLH HHSQQQQQTQ QQVVDNNQQI SGSVSTMSQF VSATQPQSPP PMQALSSLCH QQSFSDSNVN SSTTIVSPLH SIMGSSFPHD ESSLLMSLPR TSSWVPVQNS TGWPSKRIAV DPLLSSGASQ CILPQVEQLG QARNSMSQNA ITLPPFPGRE CSIDQEGSND PQSNLLFGVN IDPSSLLLHN GMSNFKGISG NNNDSSTMSY HQSSSYMNTA GADSSLNHGV TPSIGESGFL HTQENGEQGN NPLNKTFVKV YKSGSFGRSL DITKFSSYNE LRSELARMFG LEGELEDPVR SGWQLVFVDR ENDVLLLGDG PWPEFVNSVW CIKILSPEEV QQMGNTGLGL LNSVPIQRLS NSICDDYVSR QDSRNLSSGI TTVGSLDY // ID G7IQN7_MEDTR Unreviewed; 145 AA. AC G7IQN7; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES66083.1}; GN OrderedLocusNames=MTR_2g062330 {ECO:0000313|EMBL:AES66083.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES66083.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES66083.1, ECO:0000313|EnsemblPlants:AES66083, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES66083.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES66083, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES66083.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES66083} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES66083}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES66083.1; -; Genomic_DNA. DR RefSeq; XP_003595832.1; XM_003595784.1. DR EnsemblPlants; AES66083; AES66083; MTR_2g062330. DR GeneID; 11444493; -. DR Gramene; AES66083; AES66083; MTR_2g062330. DR KEGG; mtr:MTR_2g062330; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES66083.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 145 AA; 17049 MW; D0D1EE8BFD1ED92D CRC64; MAAESFNLFG KRLLLKEHFL YEKIGVEVNG TELWNVQNVD VHYWKHKVIA SILDGNNVLH FPRRVAENCL YINQSKILLF DEDGKSYDCD VHTTSKNMHQ KYIGRGWYNF VLEKDLKVGD VILFTVNNPP NQVYATVVNW DWDWD // ID G7IRU1_MEDTR Unreviewed; 755 AA. AC G7IRU1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g094570 {ECO:0000313|EMBL:AES67507.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES67507.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES67507.1, ECO:0000313|EnsemblPlants:AES67507, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES67507.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES67507, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES67507.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES67507} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES67507}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001218; AES67507.1; -; Genomic_DNA. DR RefSeq; XP_003597256.1; XM_003597208.1. DR UniGene; Mtr.19890; -. DR EnsemblPlants; AES67507; AES67507; MTR_2g094570. DR GeneID; 11417580; -. DR Gramene; AES67507; AES67507; MTR_2g094570. DR KEGG; mtr:MTR_2g094570; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 643 723 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 755 AA; 84008 MW; 790A9BE87E69DB0E CRC64; MKLVSLIDEV NKLKFLSFFC GVGRNHVCGA KEATNTLFYR TFFTQLKEQS NQNLKPMKVA EKSLDPQLWH ACAGGMVQMP SVNTKVFYFP QGHAEHAQSN VDFGDSFRIP PLILCRVASV KFLADSETDE VFSKITLIPL RNSELENDDS DGDGSENSEK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT TGWSSFVNQK KLVAGDSIVF LRAESGELFV GIRRAKRGIV NGLETPSGWS SGNGNCGLGP YGGAFTAFLR EENKLGGVGG NLGGGRVKVS GESVKEAMRL AASNQTFEVV YYPRASTPEF CIKTSAVKAA MRIQWCSGMR FKMPFETEDS SRISWFMGTI SSVQVVDPIR WPNSPWRLLQ VTWDEPDLLH NVKRVSPWLV ELVSNMSMIH LAPFSPPRKK LRFPQHPDFP LDVVQFQIPT FSGNPFNPLC CLSSSDNYNA PAAGIQGARH AQIGISLSDL HLNNNKFQLG VFPNNRETIS NVSNITTNHD NKSKESISCL LTIGNSHKRS LEIKSDNNDN RHQFLLFGQP ILTEQQISRK DSSDDVLLSK KKDKEKWFFS DTTQSSISEQ FSPAKSSTTS ASADFCWQLG LDTGHCKVFL ESEDVGRTLD LSCVGSYEEL YRKLAKMFGI ERSEMLSRVL YRDATGAVKQ TGEEPFSDFM KTAKRLTILM DSGSKDTRRV CITGTRNAER GLDASNKTGP MSIFV // ID G7IY86_MEDTR Unreviewed; 285 AA. AC G7IY86; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:AES70700.1}; GN OrderedLocusNames=MTR_3g061310 {ECO:0000313|EMBL:AES70700.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES70700.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES70700.1, ECO:0000313|EnsemblPlants:AES70700, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70700.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70700, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70700} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70700}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70700.1; -; Genomic_DNA. DR RefSeq; XP_003600449.1; XM_003600401.1. DR EnsemblPlants; AES70700; AES70700; MTR_3g061310. DR GeneID; 11443178; -. DR Gramene; AES70700; AES70700; MTR_3g061310. DR KEGG; mtr:MTR_3g061310; -. DR OMA; PKFAREN; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 191 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 191 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32993 MW; D8DAD7AD9C3690DA CRC64; MARRNATLPI RFFKIILQTN LQRIQIPNNF TRRYGVGLTN PVLIKAPDGT KWKVYWKKIN GEIWFEKGWK HFTENYSLQH GCLVVFKYKG TSKFDVLILG NNAVEIDYDS SCDTDDENGN VGQNDDESLE ISDEWRNQKI ARKRPPLFYP RPHKKFSGEN KKSTKRTSSL NRSNRARVEE VAAKFTSSNP FFTILILPNH LVAGRPRVPN IHLKGVIENK EKNLVLQIGE RSWKVKLLAS YERETGRRLS AGWSLFVNES GLQPENVCVF ELINKENLVF KVHVF // ID G7IY87_MEDTR Unreviewed; 279 AA. AC G7IY87; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES70701.1}; GN OrderedLocusNames=MTR_3g061320 {ECO:0000313|EMBL:AES70701.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES70701.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES70701.1, ECO:0000313|EnsemblPlants:AES70701, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70701.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70701, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70701.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70701} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70701}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70701.1; -; Genomic_DNA. DR RefSeq; XP_003600450.1; XM_003600402.1. DR EnsemblPlants; AES70701; AES70701; MTR_3g061320. DR GeneID; 11442747; -. DR Gramene; AES70701; AES70701; MTR_3g061320. DR KEGG; mtr:MTR_3g061320; -. DR OMA; QLEERRW; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES70701.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 32682 MW; 8D4C27C0862905BA CRC64; MARGNSTFPI HFFKIILQTN LQRIKIPNKF TRKHGVGLSN PVLIKPPDGT KWKVYWKKIN GEIWFEKGWK YFIENYSLGH GCLVVFKYKG DSKFDVHILG QNAVEIDYDP SCDGYDEKND IDHSDDESVE ILEEWLNQKN ARQRSPFVSP RPHKKVRLRK LLKELHHWPR GARAQEVAQN FISCNPFFTI LIKPNHLVAN RLNVPNFKGV IENKEKDVML QIGKRSWNVK LLCWYKHTQG RRLSARWSLF ARESGLQQGN VCVFELINKE GLVFKVHVF // ID G7IYE4_MEDTR Unreviewed; 542 AA. AC G7IYE4; A0A0C3VA82; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 37. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES68276.2}; GN OrderedLocusNames=MTR_3g005420 {ECO:0000313|EMBL:AES68276.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES68276.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES68276.2, ECO:0000313|EnsemblPlants:AES68276, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES68276.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68276, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES68276.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES68276} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68276}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES68276.2; -; Genomic_DNA. DR RefSeq; XP_003598025.2; XM_003597977.2. DR EnsemblPlants; AES68276; AES68276; MTR_3g005420. DR GeneID; 11408476; -. DR Gramene; AES68276; AES68276; MTR_3g005420. DR KEGG; mtr:MTR_3g005420; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000002051; Chromosome 3. DR ExpressionAtlas; G7IYE4; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES68276.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 381 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 441 538 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 381 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 441 538 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 542 AA; 62395 MW; 8A0107EAD1485252 CRC64; MQQHNVKLII IICIATNNTM QPHRRRCGRS PAPEKASKHF MKAILPPPDH TKEIRIPNEF IKRFGNELKN VATITVPDGR HEWEMGLKKC GEHVFLSNNW QQFAEYYCIY YGCYLDFNYQ GNSKFNVVIY DTTSVEISYS FKTPSTNGDQ RIKGPNSASK RENCAASEFN PKNPYFYSKS NRGFYAYVPS IFAEKYLTLK VPFKLQNSQG KQWEVYCVLH NKGNSQMRIT GGFGKFAREN NLLEGVTYVF ELIKRKPVVV LQVTAICTPP QGRSVQSMTE KEVRESKHFK KAILPSPIHD KEIRIPEDFI TMFGNELEKV ATVTVPDGRD WKMRLKKRGN DIFFSNEWEE FAKYYSLGYG CYLSFKYEGN SKFSVIIFDV TYVEICYPLK TPSVNGEPNT KCASPTKRSK VETSECHGKK AKSVSKHAST RAEVAANEFK PKNPYFCSII AKQNYTYIPR DFAEKYLKPK VPTKLQNSDG KQWEVFCVPN TVGSSSMRIV KGFSNFVTDN NLSHRDYCVY ELIKKKPVVL EVTMFRAVDY LD // ID G7IYE6_MEDTR Unreviewed; 442 AA. AC G7IYE6; A0A0C3VA84; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 32. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES68278.2}; GN OrderedLocusNames=MTR_3g005440 {ECO:0000313|EMBL:AES68278.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES68278.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES68278.2, ECO:0000313|EnsemblPlants:AES68278, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES68278.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68278, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES68278.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES68278} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68278}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES68278.2; -; Genomic_DNA. DR RefSeq; XP_003598027.2; XM_003597979.2. DR EnsemblPlants; AES68278; AES68278; MTR_3g005440. DR GeneID; 11408477; -. DR Gramene; AES68278; AES68278; MTR_3g005440. DR KEGG; mtr:MTR_3g005440; -. DR OrthoDB; EOG093607GJ; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES68278.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 442 AA; 50677 MW; 2EAB65BD40304308 CRC64; MLPKFEPTWV GLVVLTWDQG VCFSLRFEVR LSLVQIPDEF ITRFGNELDN VATITVPDGR EWDMELKKCG GQVFFCNNWQ HFAEYYSISY GCYLDFKYEG NSNFVVVIYD PTFVEISYPF KTSSTNGDQS IKGPNSDSKR ANCAVGEFNP KNPYFHSKSI KGIFAYVPSG FAKKYLMLMV PFIGFSKFAR ENNLLEGVTY VFELIKRKPV VVVLQVTASC TPPQGRSSQS LTEKEVRESE HFKMDILPSP IHDKEIRISD EFITRFGIEL KNVATVTATD GRDWRMRLKK HGNDIFFYNE WQEFAKYYSL GCGCYLSFKY EGNSKFSVVI FDVTSVEICY PLKTPSTNGE TNTQCPTPRK SSRVETIGSQ VIKLKIRFGH AFKSAEVAAN EFNPKNPYFW LKNVTAKFAQ KYLMPNVPIA LQNSQGKHWK VHCILYNPKS FS // ID G7IYE8_MEDTR Unreviewed; 523 AA. AC G7IYE8; A0A0C3VA86; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 34. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES68280.2}; GN OrderedLocusNames=MTR_3g005460 {ECO:0000313|EMBL:AES68280.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES68280.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES68280.2, ECO:0000313|EnsemblPlants:AES68280, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES68280.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68280, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES68280.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES68280} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68280}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES68280.2; -; Genomic_DNA. DR RefSeq; XP_003598029.2; XM_003597981.2. DR EnsemblPlants; AES68280; AES68280; MTR_3g005460. DR GeneID; 11405350; -. DR Gramene; AES68280; AES68280; MTR_3g005460. DR KEGG; mtr:MTR_3g005460; -. DR OrthoDB; EOG093607GJ; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES68280.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 261 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 415 519 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 261 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 415 519 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 60039 MW; 832B8F4B0E1F82C2 CRC64; MKPRPRRRVP STSPAAAAEK DSKHFMKAIL PPPDHTKEIR IPDEFITRFG NELDNVATIT VPDALEWDME LKKCGGQIFF CNNWQQFAEY YSIYYGCYLD FKYEGNSKFN VVIYDTTSVE ISYPFQTRRT NGEANINCPS SASERSKDAA NGINPKNTSF CSKVQNNYAY VPGEFAKEHL KPNVPFMLQN SQKKQWEVSG ALDRPGKPAM RITIGIRRFL RENKLLDGVI CRFKLIKKKP VVVIQVTASH MAEKEVRESI HFKKAILPSP IYDKEIRIPE NFITMFGNEL ENVATVTVPD GCDWEMDLKK CGEDVYFCNK EWQQFAEYYS LRYGCFLSFR YEGNSNFSVI IFDATSVEIC YPLKTPSTSG ETNTECPRPM KRSKVETSES PGKKVKSMSN YAYKRAEDAA NAFNPKNPHF RSKITKGRHA YVPSIFASEY LKPNAPIKLL NSHREEWKVF GIEHNARSST RKAKSPAMQI TQGFSQFIRE NDLSYGDCCV YELIEENPPV LEVTMFCVVD YWD // ID G7IYE9_MEDTR Unreviewed; 266 AA. AC G7IYE9; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES68281.1}; GN OrderedLocusNames=MTR_3g005480 {ECO:0000313|EMBL:AES68281.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES68281.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES68281.1, ECO:0000313|EnsemblPlants:AES68281, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES68281.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68281, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES68281.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES68281} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68281}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES68281.1; -; Genomic_DNA. DR RefSeq; XP_003598030.1; XM_003597982.1. DR EnsemblPlants; AES68281; AES68281; MTR_3g005480. DR GeneID; 11405351; -. DR Gramene; AES68281; AES68281; MTR_3g005480. DR KEGG; mtr:MTR_3g005480; -. DR OMA; WWGNSAG; -. DR OrthoDB; EOG093607GJ; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES68281.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 266 AA; 30572 MW; 8387A4A55777EEB5 CRC64; MQARRRSSVR PPVAEKDSKH FMKAILPSAI HDTKLRIPDE FIKRFGNELK NVATITVPDG CDWEMKLKKC GNDVYFCNKW QQFAEYYSIG YGSFLCFKYE GDSKFSVFIF DATSIEICYP FKTQSTNGET KTKFHSPRKR SKVETSDNHA SKRAEEAAKE FNPKNPYFCS KILKGNYVYV NADFASKHLN PNVPIKLQNS HGKQWEVSCA MHDAKSSSTA MIISRGFPIF LRGNNLSHGD YCVFELINKT PDVLKVTMFR VIDYYV // ID G7IYF0_MEDTR Unreviewed; 265 AA. AC G7IYF0; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES68282.1}; GN OrderedLocusNames=MTR_3g005490 {ECO:0000313|EMBL:AES68282.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES68282.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES68282.1, ECO:0000313|EnsemblPlants:AES68282, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES68282.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68282, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES68282.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES68282} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES68282}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES68282.1; -; Genomic_DNA. DR RefSeq; XP_003598031.1; XM_003597983.1. DR EnsemblPlants; AES68282; AES68282; MTR_3g005490. DR GeneID; 11411752; -. DR Gramene; AES68282; AES68282; MTR_3g005490. DR KEGG; mtr:MTR_3g005490; -. DR OMA; QRWHTEL; -. DR OrthoDB; EOG093607GJ; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES68282.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 265 AA; 30548 MW; E40FA35069DDBBE2 CRC64; MQARRRSSVR PPAPEKDSKH FMKAILPSPI HDTQIRIPDG FIKRFGNELK NVATITVPDG CDWEMELKKC GNDVYFCNKW QQFAEYYSIG YGSFLRFKYE GDSKFNVVIF DVTSVEICYP FKTQSINGET NTKCHSPRKR SKVETSDNHA SKRSEEAAKE FNPKNPYFCS KILKRKYVYV NADFASKYLK PNVPIKIQTS HGEQWEVFGI LHDANSSSAM KITRGFSIFQ RDNNLSHGDY CVFELIKNNP LVLKVTMFRA ADYGD // ID G7J3B6_MEDTR Unreviewed; 328 AA. AC G7J3B6; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES73017.1}; GN OrderedLocusNames=MTR_3g098790 {ECO:0000313|EMBL:AES73017.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES73017.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES73017.1, ECO:0000313|EnsemblPlants:AES73017, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES73017.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES73017, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES73017.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES73017} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES73017}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES73017.1; -; Genomic_DNA. DR RefSeq; XP_003602766.1; XM_003602718.1. DR EnsemblPlants; AES73017; AES73017; MTR_3g098790. DR GeneID; 11434552; -. DR Gramene; AES73017; AES73017; MTR_3g098790. DR KEGG; mtr:MTR_3g098790; -. DR OMA; ELSSGWK; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES73017.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 301 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 301 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 328 AA; 37995 MW; A438E30ABBC77255 CRC64; MANKIPRAKP VHFFKIILTQ NLHHGKLMMP RKFVEKYGEC LPKTICVKTP NGVNWKLNLV KSDGKIWFQK GWKEFAEYHS LAHGHLLLFK YERTSLFHVH IFDKSALEIN YPLTRVEDKR VFNCQGKKPS NNEDCRASQK RKTNSSFEIG SSSCVNVRKF QKAAVHHIDR KGKGKPVIVD ADKVTTLERA KSFKTCNPSF VVVMGASYVE HHFLLTIPSM FGKRHFDLNK KRGDIHFQLS NGRVWPAKYR IRMSHTGLRF ELSSGWKTFA KDNNLKVGDA CNFELILSTN MTFQVHIFRE TDKDNTNCST SQSRINWCLI FFPIPFLI // ID G7J463_MEDTR Unreviewed; 593 AA. AC G7J463; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_3g073420 {ECO:0000313|EMBL:AES71388.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES71388.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES71388.1, ECO:0000313|EnsemblPlants:AES71388, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES71388.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES71388, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES71388.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES71388} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES71388}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES71388.1; -; Genomic_DNA. DR RefSeq; XP_003601137.1; XM_003601089.2. DR EnsemblPlants; AES71388; AES71388; MTR_3g073420. DR GeneID; 11422215; -. DR Gramene; AES71388; AES71388; MTR_3g073420. DR KEGG; mtr:MTR_3g073420; -. DR OMA; IDPKIWR; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 593 AA; 64873 MW; 56A232CE70B6C2B8 CRC64; MNRQVLPPSP KNASSLNPKL WRAIAGAAVQ IPTVNSRVYY FPQGHMDQAT SLPNNLSPLL LSRPYILCSV SAVHFLADPK TDEVFAKLFL QPLNDFTVNF PRIPVIEADD GERISSFAKI LTPSDANNGG GFSVPRFCAD SIFPPLDYSM DPPLQNLLIT DVHGLTWEFR HIYRGTPRRH LLTTGWSKFV NAKKLVAGDS VVFMKNTRGA MFIGIRRAVR FVPNRTSSGV CSDVSRLCLP ICGVRSRVDD EEKLVEEKAF SRHGKGKLSP VAVAEAAEMA AQGMGFEVVY YPRAGWSDFV LKAEVVDAAM SVTWCPGMRI KMAVETDDSS RTTWFQGVVS QVSVPDHGAW RGSPWRMLHI TWDEPEVLQT SKWVSPWQVE LLSTTPSLHT PFPPLKRTRG VSGVLTDGDG DPFSITGFTN STTGQLNQPL LSYSTFPAGM QGARHDLFSV SSFSNFPGDN FRLCMGNSFG SNTVPGLKSF STDLNVGSSQ SGDFSPESQS SLPSFGTDFV RNYNCNSMKP GPITFQLFGA VIQTEQPVES GSHGTVSTGD DSSKGCNETE GINNPLEDST YSKLLDRLDG QCQIASTVEA CYL // ID G7J6B9_MEDTR Unreviewed; 231 AA. AC G7J6B9; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=B3 domain transcription factor {ECO:0000313|EMBL:AES73276.1}; GN OrderedLocusNames=MTR_3g101520 {ECO:0000313|EMBL:AES73276.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES73276.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES73276.1, ECO:0000313|EnsemblPlants:AES73276, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES73276.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES73276, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES73276.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES73276} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES73276}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES73276.1; -; Genomic_DNA. DR RefSeq; XP_003603025.1; XM_003602977.2. DR EnsemblPlants; AES73276; AES73276; MTR_3g101520. DR GeneID; 11431814; -. DR Gramene; AES73276; AES73276; MTR_3g101520. DR KEGG; mtr:MTR_3g101520; -. DR OMA; MPAPVYK; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000002051; Chromosome 3. DR ExpressionAtlas; G7J6B9; differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 231 AA; 26245 MW; 96A6DA810C581010 CRC64; MVAKASSYEE SRRKRMEENQ KRMEALSLTK LSQSLHKSSS PISKPSPSKP RTPIKKELVV VRRSGRVANM PAPVYKEILI DSVKIPRNRI SRCGGYDKYR DYSKRVYASD EARMEAMEKA DKLLSDLDSD HPTFVKSMLQ SHVTGGFWLG LPNHFCRKNL PKRDEVMTLI DEDGDESPTT YLAHKTGLSA GWRGFAIAHN LVDGDALIFE LVKRTAFKVY IIRVNEGKQD D // ID G7J7V1_MEDTR Unreviewed; 849 AA. AC G7J7V1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_3g064050 {ECO:0000313|EMBL:AES70845.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES70845.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES70845.1, ECO:0000313|EnsemblPlants:AES70845, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70845.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70845, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70845.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70845} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70845}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70845.1; -; Genomic_DNA. DR RefSeq; XP_003600594.1; XM_003600546.2. DR EnsemblPlants; AES70845; AES70845; MTR_3g064050. DR GeneID; 11413758; -. DR Gramene; AES70845; AES70845; MTR_3g064050. DR KEGG; mtr:MTR_3g064050; -. DR OMA; ESHHIVS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 723 807 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 849 AA; 94267 MW; B41FF0AABCE904E7 CRC64; MKLSTSGLGQ QGHEGGGGEK KCLNSELWHA CAGPLVSLPT AGTRVVYFPQ GHSEQVSATT NREIDGQIPN YPSLPPQLVC QLHNVTMHAD VETDEVYAQM TLQPLTPEEQ KDTFLPMELG IPSKQPSNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDVEW KFRHIFRGQP KRHLLTTGWS IFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ANRPQTVMPS SVLSSDSMHI GLLAAAAHAS ATNSCFTVFY NPRASPSEFV IPLSKYIKAV YHTRISVGMR FRMLFETEES SVRRYMGTIT GISDLDAVRW QNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS LFPLRLKRPW HPGTSSLLDG RDEATNALMW MRGGPADQGL NSLNFQGAGM LPWMQQRLDP TLLGNDQNQQ YQAMLAAAGM QNMGGGYLMR PQMVNFQQQP THYLQSGNNN SPLQLHQPQS IQQSVSSNMM QPQQTQILTE NLSQHLLQKP NNNQELQAQQ QQHAYQDTLL VQNDQLHQRQ QQSNVPSPSY SKPDFLDSNI KFPASVPSGQ NMLGSLCPEG TGNLLNLSSL TRSGQSLMNE QLPQQSWTPK YGNMQVNAFG SAMSHAQYSG KDSAIVPPHC DSDAQNHTLS GVNIDSSGLL LPTTVPNYTA STTDTGASTQ LGESGFQGSL YACMQDSSFL QNAEQIDTQN QNPTFVKVYK SGSVGRSLDI SRFSCYRELR EELGQMFGIE GKLEDPLRSG WQLVFVDREN DVLLLGDDPW ESFVNNVWYI KILSPEDIQK MGDQAVEMHG LGSGQRLNGT GESHHIVSGQ PPSIGSLDY // ID G7JEX9_MEDTR Unreviewed; 273 AA. AC G7JEX9; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES89037.1}; GN OrderedLocusNames=MTR_4g068300 {ECO:0000313|EMBL:AES89037.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES89037.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES89037.1, ECO:0000313|EnsemblPlants:AES89037, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES89037.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES89037, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES89037.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES89037} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES89037}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES89037.1; -; Genomic_DNA. DR RefSeq; XP_003606840.1; XM_003606792.2. DR EnsemblPlants; AES89037; AES89037; MTR_4g068300. DR GeneID; 11412485; -. DR Gramene; AES89037; AES89037; MTR_4g068300. DR KEGG; mtr:MTR_4g068300; -. DR OMA; TGCERED; -. DR OrthoDB; EOG09360WNZ; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES89037.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 31108 MW; EF7C1063B24E2DB1 CRC64; MDYDHQDKPS FFAIIKEGFN INSLKVPPEI VTDLGEELWK NTFMILVGSS GEKWEVSILK KGNDIYLQIG WQKFLIDNKV MLEELLVFTY DGENKFQGQI FGKNGLERPC FKNVPEQEEV QEEEEEVTAA PPFTVAKRKR GRPRKVPSPE SECFKKEKAE VPAKIAVKRN DCRARKSPAG ERVCFRKKEE VAATIMSMGK RRKNRQRVSV KKEEAKAAAT MAAAINKGRT RENPAGERVC VKKEDAKAEE TIVAERKKGR PRKYSAPVVI YVN // ID G7JEY0_MEDTR Unreviewed; 198 AA. AC G7JEY0; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES89038.1}; GN OrderedLocusNames=MTR_4g068310 {ECO:0000313|EMBL:AES89038.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES89038.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES89038.1, ECO:0000313|EnsemblPlants:AES89038, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES89038.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES89038, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES89038.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES89038} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES89038}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES89038.1; -; Genomic_DNA. DR RefSeq; XP_003606841.1; XM_003606793.2. DR EnsemblPlants; AES89038; AES89038; MTR_4g068310. DR GeneID; 11414897; -. DR Gramene; AES89038; AES89038; MTR_4g068310. DR KEGG; mtr:MTR_4g068310; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES89038.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 198 AA; 22613 MW; 1B6F403650CB4DCB CRC64; MDHEQQDKPS FFAIIKEGFN TKCMKVPPKI VMDLGEEFWK KASIILVCSS GEKWEVKILK KANDIYVRNF GWQKFLKDNS VGLEEFLVFT YIGENLFNVE IYGKNGLEKP CFKKKQEVVA APIVAKRKRG RPRRNPAGVE EEKEEAAPTI VAKTKMVQRK YPSRVCVRKE KAETLATIVT KKGIPRKNPA PLSVILVD // ID G7JEY1_MEDTR Unreviewed; 429 AA. AC G7JEY1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=B3 domain transcription factor VRN1-like protein {ECO:0000313|EMBL:AES89039.1}; GN OrderedLocusNames=MTR_4g068320 {ECO:0000313|EMBL:AES89039.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES89039.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES89039.1, ECO:0000313|EnsemblPlants:AES89039, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES89039.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES89039, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES89039.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES89039} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES89039}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES89039.1; -; Genomic_DNA. DR RefSeq; XP_003606842.1; XM_003606794.2. DR EnsemblPlants; AES89039; AES89039; MTR_4g068320. DR GeneID; 11412282; -. DR Gramene; AES89039; AES89039; MTR_4g068320. DR KEGG; mtr:MTR_4g068320; -. DR OMA; CILQFDE; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 295 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 295 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 429 AA; 48515 MW; AAEA3561939A2569 CRC64; MPSPSFHKLV LPSTLQAKQL RLPDDFMRKY GGDISPTVTL TVPDGSVWRV IMKKVDNKFW FLDGWNEFVQ NYSISTGYLL VFKYEGKSHF TVNIFSLPTS EINYQSPAQR SNEASLFGKR LTIFEEMEDE DSVEIMESSP TKLTPSLLQN KAVSGSADKL TPGKSRPPPA LQNLFNGSKL NSINWGEGGN TPSRNDNSVD NQLTRDIGLQ FNVVEFKKSN EELKLRAATD EKVKKTAVKK RKSDVQEPPS EHEDEVEMRN RFYESASARK RTATAEEREK AINAAKTFEP SNPFCRVVLR PSYLYRGCIM YLPSCFAEKN LNGVSGIIKL QISDGRQWPV RCLYRGGRAK LSQGWFEFSL ENNLGEGDVC VFELVATKEV VLQVTVFRIT EDEGPLSPQP LQQNQHVNPV KLVNVPFQHH LASTKLIRN // ID G7JHL3_MEDTR Unreviewed; 193 AA. AC G7JHL3; A0A0C3X1A8; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 32. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES90030.2}; GN OrderedLocusNames=MTR_4g083390 {ECO:0000313|EMBL:AES90030.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES90030.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES90030.2, ECO:0000313|EnsemblPlants:AES90030, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES90030.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES90030, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES90030.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES90030} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES90030}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES90030.2; -; Genomic_DNA. DR RefSeq; XP_003607833.2; XM_003607785.2. DR EnsemblPlants; AES90030; AES90030; MTR_4g083390. DR GeneID; 11441927; -. DR Gramene; AES90030; AES90030; MTR_4g083390. DR KEGG; mtr:MTR_4g083390; -. DR OrthoDB; EOG09360Z5S; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES90030.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 21384 MW; D3004BEF2DB8ED40 CRC64; MCHEFVSVAK IHAALDKVCL LGCSVPTCKL LNFIRLNLSS GRVAVGNRAS FPSPSVPTTN MQTGGIEPLT GEPYFHVVLS KTHLSTRYGM GPSSSICEEL PSKEVPTILK YRGKSWGMTY NGQNKTKQFD SVSWEKFAED NYLKLGDACV FELMKNSEEE IVFKVQILRG EEEPILLSEF PGTGERDAPF VID // ID G7JHL4_MEDTR Unreviewed; 149 AA. AC G7JHL4; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 29. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES90031.2}; GN OrderedLocusNames=MTR_4g083390 {ECO:0000313|EMBL:AES90031.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES90031.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES90031.2, ECO:0000313|EnsemblPlants:AES90031, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES90031.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES90031, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES90031.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES90031} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES90031}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES90031.2; -; Genomic_DNA. DR RefSeq; XP_003607834.2; XM_003607786.2. DR EnsemblPlants; AES90031; AES90031; MTR_4g083390. DR GeneID; 11441927; -. DR Gramene; AES90031; AES90031; MTR_4g083390. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES90031.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 149 AA; 16982 MW; 727AB9A661ECC90F CRC64; MQTGGIEPLT GEPYFHVVLS KTHLSTRYGM GPSSSICEEL PSKEVPTILK YRGKSWGMTY NGQNKTKQFD SVSWEKFAED NYLKLGDACV FELMKNSEEE IVFKVQILRG EEEPILLSEF PGTAEANLSW LEIHLPLWDC SRLQDTFVL // ID G7JIB0_MEDTR Unreviewed; 900 AA. AC G7JIB0; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 37. DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:AES87486.1}; GN OrderedLocusNames=MTR_4g028130 {ECO:0000313|EMBL:AES87486.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES87486.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES87486.1, ECO:0000313|EnsemblPlants:AES87486, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES87486.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES87486, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES87486.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES87486} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES87486}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES87486.1; -; Genomic_DNA. DR RefSeq; XP_003605289.1; XM_003605241.2. DR EnsemblPlants; AES87486; AES87486; MTR_4g028130. DR GeneID; 11424037; -. DR Gramene; AES87486; AES87486; MTR_4g028130. DR KEGG; mtr:MTR_4g028130; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 315 416 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 579 629 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 315 416 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 900 AA; 100114 MW; E136C5A3D910023D CRC64; MESKCCMNVV CGTSTSIRWR KGWILRSGEF ADLCDKCGSA YEQSAFCDMF HAKESGWREC TSCGKRLHCG CVASKSQLEI LDTGGVSCIT CASTSGLQPI ASNENPNESG TAKVNNVSAQ QCITLANQLN VRGMQVGNYA ENDGMRCWLK PHNVDFDGLS REIKPEVLPS VGEFGSTLMS QFHRESNGSS RTGKAENDMQ DIYESLAQTN LSMTLAAPLP NPFHNVLVDE REQSKMSPPL LLASRSRHLL PKPPRPALSP GLEGNTGMVS QIRIARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST IVPLFEKMLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL PLRIQDVKGK EWMFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLIM GFRKATNSAS QETFPSNMPN GSHSSETSYS GVYENIPILS GYSGLLQSQK GCSETHLNAL SKKWNSVGAD MDWHNVEMPE SRKRDVLSLP PVLVPEKKRT RNIGSKSKRL LIDSEDALEL KLTWEEAQDL LRPPPEVKPS VVMIEDHLFE EYEEPPVFGK KSIFVVRSTG ISEQWTQCDS CQKWRKLPVD VLIPPKWTCM ENFWDQSRCS CAAPNELNPM ELDNLLRMNN EFKKQRQAAA SQRPALDRES SGLDALANAA VLGDDASDSG RTPVLTTTRH PRHRPGCSCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQKN QQSWRTKDES EVDSTSRHLT PVDGSENEAR VPNELDSRNE DQVADAAKGQ LDLNCQPDRE DMQAGPNTLS MMTLLEEANL PLETYLKQNG LSSLISEQQT NSASNVQAHT TNESEGRQNE DCCTASAVHE QEDSPEENSG QDRDQNNSLS // ID G7JLI4_MEDTR Unreviewed; 377 AA. AC G7JLI4; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES91879.1}; GN OrderedLocusNames=MTR_4g119990 {ECO:0000313|EMBL:AES91879.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES91879.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES91879.1, ECO:0000313|EnsemblPlants:AES91879, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES91879.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES91879, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES91879.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES91879} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES91879}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES91879.1; -; Genomic_DNA. DR RefSeq; XP_003609682.1; XM_003609634.1. DR EnsemblPlants; AES91879; AES91879; MTR_4g119990. DR GeneID; 11418291; -. DR Gramene; AES91879; AES91879; MTR_4g119990. DR KEGG; mtr:MTR_4g119990; -. DR OMA; GEDHTSK; -. DR OrthoDB; EOG093618S9; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES91879.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 216 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 216 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 377 AA; 43777 MW; 4142F56AE9FC95EC CRC64; MSSTELDHRS NGVHFFKIIL QRNLNEGKLK VPVSFVRRHW LGITNPVTLR LPNMTENKVF WEKTSDYNVW FCNGWKEFAK YLSLGDSQLT LFQYQENSVF NVIVCGKCGL EIKYPLKETN KEHEEVEESD TSLQIIEDPS SSKGKRLKSS PPYFKKMKIN SKEQKEPKHE KRKVQEQGRF LNFKDTDNGS SCDDLKERSK VLYDKVKNFF HADMDFFMCM IQKTYIKKDV LGIPIEFAKK HLHRMEGRNI TLFVDQDRPW NADLNLTLNN QYTLSGGWSK FRAHNNLKFG DICVFMLNKC KGTVSFQVKI FSLEKDMSTP YFEVAWYLLG AEPTPASLGT SPGSAPTFFI TSLGGWHRTT LQRRKKIDWG GKCLGRK // ID G7JQF5_MEDTR Unreviewed; 792 AA. AC G7JQF5; A0A0C3WXC7; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g060460 {ECO:0000313|EMBL:AES88645.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES88645.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES88645.2, ECO:0000313|EnsemblPlants:AES88645, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES88645.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES88645, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES88645.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES88645} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES88645}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES88645.2; -; Genomic_DNA. DR RefSeq; XP_003606448.2; XM_003606400.2. DR EnsemblPlants; AES88645; AES88645; MTR_4g060460. DR GeneID; 11406453; -. DR Gramene; AES88645; AES88645; MTR_4g060460. DR KEGG; mtr:MTR_4g060460; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 745 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 88099 MW; 231E35D5F8BFF513 CRC64; MEIDLNNEVI EVEKNALCHK ECEKGFCFCV SCLSPSTCSS SSSTSPLVSS SYLELWHACA GPLTSLPKKG NVVVYFPQGH LEQFASFSPF KQLEIPNYDL QPQIFCRVVN VQLLANKEND EVYTQVTLLP QAELAGMHME GKEVEELEGD EEGDGGSPTK STPHMFCKTL TVSDTSTHGG FSVPRRAAED CFPPLDYKLQ RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVN QKNLVSGDAV LFLRGQNGEL RLGIRRAVRP RNGLPESIVG NQNCYPNFLS SVANAISTKS MFHVFYSPRA SHAEFVVPYQ KYVKSIKNPM TIGTRFKMRI EMDESPERRC SSGMLIGIND LDPYRWPKSK WRCLMVRWDD DTETNHQDRV SPWEIDPSSP QPPLSIQSSP RLKKPRTGLL VASPNHLITG MNPNGISGMM GFEESVRSPK VLQGQENTGF MSLYYGCDKV TNQPGFELST SSHHQNLAST GIGKVVTSSE LMSVHPFSYA GFMESNNFPR VLQGQEICKL KSLSGKVDFN IGAWGTKPSF QSACFPYGDI DKSNQASMFS SKHTSFMSDN VPFNTPSIVA GDIRKEVGRS GSNLLPNEHK LQDNVSASAS LVDTNRNAPN DNNVKGKANS CKLFGFPLSG EPSSQNLQNT AKRSCTKVHK QGSLVGRAID LSRLSGYNDL LSELEKLFGM EGLLRDSDKG WRILYTDSEN DIMVVGDDPW HEFCDVVSKI HIYTKEEVEK MTFGMMTNDD THSCLDQAPV IIEPSKSSSV GQPDYSPTVV RV // ID G7JS69_MEDTR Unreviewed; 1120 AA. AC G7JS69; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g124900 {ECO:0000313|EMBL:AES92167.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES92167.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES92167.1, ECO:0000313|EnsemblPlants:AES92167, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES92167.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES92167, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES92167.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES92167} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES92167}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES92167.1; -; Genomic_DNA. DR RefSeq; XP_003609970.1; XM_003609922.2. DR EnsemblPlants; AES92167; AES92167; MTR_4g124900. DR GeneID; 11445778; -. DR Gramene; AES92167; AES92167; MTR_4g124900. DR KEGG; mtr:MTR_4g124900; -. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 993 1086 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1120 AA; 125415 MW; 3AFEE429E383C5C2 CRC64; MKAPNNGYMP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKDAIL ASDFGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD LHDNTWAFRH IYRGQPKRHL LTTGWSVFIS TKRLFAGDSV LFIRDEKQQL LLGLRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIYYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR QNFPGHPGMP DDGSDVENSF KRAMPWLGDD FGMKDASSSV FPGLSLVQWM SMQQKNQFSG AQSGCFPSML SSNTLHSNLS TDDPSKLLSF QAPALSAPNL QFNKPNLPNQ INQLQQSPTS WPQQQQQQQQ PLQQQQQQQQ QQQQQLQSLS QIPMNQFQQQ RQQQLPESQN LTLLQQQITH QLQKQPQSSQ HAIMNNGVVA SNQITNQFQQ PQPLAYAQLQ QQQQLLQGSI PLQQSIQSAS KNAFPLTSLP HDSQFHQQID QQASLSQRQQ QQTQSQQSSL QALQQSQPQR VQPNLQATQM SQQNTSEQQL QLQFLQKLQQ QQQQQQLLST SNPLLQSQLL QQQNTNQQNQ QLSQLPISQH HNQQFGNNAF STEKLLNSNN LSSSSLMQSQ QLSVNQTRNT QKPLTITRVP STLTDGEAPS CSTSPSTNNC RITQPNLLKR NQQVPTTIGG ILAVEPTSNL IHDLQSKSDM HIKHEFSNVK GSDQLKYKGT TTDQLEASSG TSYCLDPGNV QQNLPLSNFC MEGDVQSNPR INLPFDSNLD GLMSDTMLSR GFDSQKDLQN LLSNYDAAPR DIETELSTAD ISSQSFGLPD MSFKPGCSND VGINDTSGVL NNGLRANQNQ RMRTYTKVQK RGSVGRCIDV TRYKGYDELR YDLARMFGIE GQLEDPQRTD WKLVYVDHEN DILLVGDDPW EEFVSCVQSI KILSSAEVQQ MSLDGDLGNV TIPNQASSGT DSGNAWRGQY DDNSAASFNR // ID G7JUG1_MEDTR Unreviewed; 667 AA. AC G7JUG1; A0A0C3WT17; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_4g021580 {ECO:0000313|EMBL:AES87135.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES87135.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES87135.2, ECO:0000313|EnsemblPlants:AES87135, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES87135.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES87135, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES87135.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES87135} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES87135}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001220; AES87135.2; -; Genomic_DNA. DR RefSeq; XP_003604938.2; XM_003604890.2. DR EnsemblPlants; AES87135; AES87135; MTR_4g021580. DR GeneID; 11412612; -. DR Gramene; AES87135; AES87135; MTR_4g021580. DR KEGG; mtr:MTR_4g021580; -. DR KO; K14486; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000002051; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 636 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 74194 MW; A6470BC31C606812 CRC64; MLNHGSNVSA EVGGCSDEEL WKAIAGPLVD VPCVGQSVFY FPQGHMEQLE ASTNQELNQR IPVLKLPTKI LCRIVNIHLL AEQETDEVYA QITLVPESNQ NEPTIPDPPT EELPRPKIHS FCKILTASDT STHGGFSVLR KHATECLPPL DMSQPTPTQE LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGELRVGVR RLARQSSSMP SSVISSQSMH LGVLATASHA VATQTLFVVY YKPRTSQFIV SVNKYLSAVS NKFAVGMRFR MRFESDDSAE SDKRFSGTIV GVEDISPHWA NSKWRSLKVQ WDEPSAITRP DRVSPWEIEP FVSSASTATV QPTAAKTKRP RPTSEIPDVD TTSAASIFWD ARMSQTDMTQ RIMNSKTNNN ATLRNQTEGS WLSSPRSSYP SHLLHDTTDD GKSVSAWPVS QPQSSILNID RMLDQVEKDN KVETATTYRL FGIDLIDHSK KSAAVEIPSS HAVNGNGVTT EVSSSTLSSS DTARKSDISK ASFERKQEPQ QVSPKETQSK QICSRSRTKV QMQGVAVGRA VDLATLNGYD QLIGELEELF DIKGQLQHRN TWEIVFTDDE GDMMLVGDDP WPEFCNMVRR IFICSSQDVK KMKSGSKLPI SSSIEEGTVI SSDTTER // ID G7JXZ7_MEDTR Unreviewed; 330 AA. AC G7JXZ7; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES97051.1}; GN OrderedLocusNames=MTR_5g044670 {ECO:0000313|EMBL:AES97051.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES97051.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES97051.1, ECO:0000313|EnsemblPlants:AES97051, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES97051.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97051, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES97051.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES97051} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97051}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES97051.1; -; Genomic_DNA. DR RefSeq; XP_003614093.1; XM_003614045.1. DR EnsemblPlants; AES97051; AES97051; MTR_5g044670. DR GeneID; 11426643; -. DR Gramene; AES97051; AES97051; MTR_5g044670. DR KEGG; mtr:MTR_5g044670; -. DR OMA; GESHEAN; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES97051.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 207 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 207 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 38913 MW; 3816FEB784A97715 CRC64; MSSPSSVHQF HKSQCFFKVI VEKTLKKKEI ILPRSFVKKY GKKLSNPVTL VLPNGDKWEV HWIKRDHDVC FQKGWENFSQ HYSMSYGHFL VFRLETRSQF QVMIFDKSAL EMDYWSIPSP RYQVERNIHR HEDAEKSGDK DDYIEISDET EMRRSSSPQP HKRMKTSDGG NAEIFFKEKN VSSNEAMNWK ELLQNTKRRA MNFHSDNPFF IRPLHPSYLE HMFIPTSFSK EYLNGKNGIA TVLFGDEDKT WRLNFKFNDT TNRALITSGW GQIVDEYNFK VGDTCVFEMT DSTNIFFKVH IVRANDQSSS EHFQDFGNPK LKRKSNSRQN // ID G7JY94_MEDTR Unreviewed; 378 AA. AC G7JY94; A0A0C3XK77; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 38. DE SubName: Full=AP2/ERF and B3 domain transcription factor {ECO:0000313|EMBL:AES97413.2}; GN OrderedLocusNames=MTR_5g053920 {ECO:0000313|EMBL:AES97413.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES97413.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES97413.2, ECO:0000313|EnsemblPlants:AES97413, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES97413.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97413, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES97413.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES97413} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97413}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES97413.2; -; Genomic_DNA. DR RefSeq; XP_003614455.2; XM_003614407.2. DR EnsemblPlants; AES97413; AES97413; MTR_5g053920. DR GeneID; 11436458; -. DR Gramene; AES97413; AES97413; MTR_5g053920. DR KEGG; mtr:MTR_5g053920; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 195 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 195 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 41776 MW; 0A74C06B7777C6F4 CRC64; MDGGSCIDES TTTESFSITI SPTKKPSTPP PPNSLCRVGS GASAVVDSDG SGVGEAESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNQEDEAA KAYDVAAQRF RGKDAVTNFK PLSDHNNDDM ELEFLNSHSK SEIVDMLRKH TYNDELEQSK RSHGFVSRRS HGCSDSVNFA SSAYNTDKKA REALFEKVVT PSDVGKLNRL VIPKQHAEKH FPLQKADCVQ GSASAAGKGV LLNFEDIGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDTVCFQR STGPEKQLFI DWKARKNVNE VGLFVPVGPV VEPVQMVRLF GVNILKQLPG SDVNSNGNVI AGFCNGKRKE LNMFTFDSCK KPKIIGAL // ID G7K0T7_MEDTR Unreviewed; 786 AA. AC G7K0T7; A0A0C3XPQ5; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 34. DE SubName: Full=B3 domain transcription repressor VAL2 {ECO:0000313|EMBL:AES98992.2}; GN OrderedLocusNames=MTR_5g075410 {ECO:0000313|EMBL:AES98992.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES98992.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES98992.2, ECO:0000313|EnsemblPlants:AES98992, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES98992.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES98992, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES98992.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES98992} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES98992}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES98992.2; -; Genomic_DNA. DR RefSeq; XP_003616034.2; XM_003615986.2. DR EnsemblPlants; AES98992; AES98992; MTR_5g075410. DR GeneID; 11431594; -. DR Gramene; AES98992; AES98992; MTR_5g075410. DR KEGG; mtr:MTR_5g075410; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 322 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 786 AA; 86915 MW; 12080DA9D2ECC4DC CRC64; MGVEVCMNNY CKEGSTGEWK KGWSLISGGF AKLCNKCGLA YENSLFCDKF HRHETGWRKC SNCSKPIHSG CIVSKSSFEY LDFGGITCVT CVKPSQLCLN TENHNRFSQT TKNNASDQYG EHIDGRLLVE QAGKGNLMQL CRIGEVGESS RWPQAQRDAM VSCIGPKTEE VKCQFNKEDT RFLNVMKHSS HLTAFTTLEN NRPSWETKSI DETLSLKMAL GTSSRNSVLP LATEIGEGKL EGKASSHFQQ GQTSQSILAQ LSKTGIAMNL ETNKGMISHP PRRPPADVKG KNQLLSRYWP RITDQELEKL SGDLKSTVVP LFEKVLSPSD AGRIGRLVLP KACAEAFLPR ILQSEGVPLQ FQDIMGNEWT FQFRFWPNNN SRMYVLEGVT PCIQSLQLNA GDTVTFSRID PGEKFLFGFR RSLTSIVTQD ASTSSHSNGI LIKDTNFSGA PQNLNSLSSF SNLLQSMKGN GEPYLNGHSE HLRLGNGTAD WLKTANSEEE MNNGPLQRLV SVSEKKRSRN IGTKTKRLHI HSEDAMELRL TWEEAQEFLC PPPSVEPNFV TIEDQVFEEY DEPPVFGKIK TNASPSGSSG SASEQLGPKE QESLQRTKKD SKKKRKIAEK SKSIQEHKLS GLDALANAAV LGNNLADPDE SSSAGVTTRH PRHRPGCTCI VCIQPPSGQG KHDPTCTCLA CETLKRRFKS LTMRKKKNQL ESEAVADQNN QVNHRDEAGT SVGASRQDTS HSTDEGSLNG GQLEVVEPSA AGQLDLNCHP SHEEMETDTY NRPKHD // ID G7K918_MEDTR Unreviewed; 399 AA. AC G7K918; A0A0C3XLF4; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g060780 {ECO:0000313|EMBL:AES97840.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES97840.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES97840.2, ECO:0000313|EnsemblPlants:AES97840, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES97840.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97840, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES97840.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES97840} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97840}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES97840.2; -; Genomic_DNA. DR RefSeq; XP_003614882.2; XM_003614834.2. DR EnsemblPlants; AES97840; AES97840; MTR_5g060780. DR GeneID; 11435441; -. DR Gramene; AES97840; AES97840; MTR_5g060780. DR KEGG; mtr:MTR_5g060780; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 44396 MW; 8B4CC3DB872B1086 CRC64; MSLPLPPRVD PKIWQICVGP DVKIPKIHSK VYYFPRGHLE HACSSPTAAT RTILDRYRSS IPCIVSSVDL FVDPHTDEVF AKLLLTPVTD QEPPPPVVPG QEDDDGDNLV SYVKTLTQSD CTRVLCVPIE CSNLIFPKLD LDKSQSITVT DLKNQEWRYT YTYSNSSRLH TGWLNFVREK KLVANDSVVF IKNSAGKISV GIRRNTKFTT DEAAEGSENL TDEIKVLDAA ELAEKNTAFD VVYYPTASGW RDFVVDAKTV DDAMKIGWKS GMRVKLPLKK YESSNSKMTI SQLKGTISFV FNHSSNVPNW RILEVNWDGL DIPQIPNLVN PWQVEVYNIH APSTSSSTVN NPRLAESSSP QQIPYSMPGT SGPMSQAPSE VSSLAYLCNI GLQSQLGTR // ID G7K951_MEDTR Unreviewed; 528 AA. AC G7K951; A0A0C3XLI7; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g061220 {ECO:0000313|EMBL:AES97873.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES97873.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES97873.2, ECO:0000313|EnsemblPlants:AES97873, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES97873.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97873, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES97873.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES97873} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97873}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES97873.2; -; Genomic_DNA. DR RefSeq; XP_003614915.2; XM_003614867.2. DR EnsemblPlants; AES97873; AES97873; MTR_5g061220. DR GeneID; 11431513; -. DR Gramene; AES97873; AES97873; MTR_5g061220. DR KEGG; mtr:MTR_5g061220; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 528 AA; 58546 MW; EAE362B8D1652A61 CRC64; MSSPPATMSV PPPRRVKSKI WQTCAGPSVN VPKVRSKVYY FPHGHLEHAC PSPNPQTITV IDGYGPSFPC IITAVDLLAD PHTDEVFAKL LLSPVTEGQE FPEVVDEEDD GGDKFVSFVK TLTKSDSNNG GGFSVPRICA DLIFPKLDLN SPFPSQQLSV TDVHDRVWKF AHVYRGRPKR HLFTTGWTPF VNTKKLVAGD SIVFMKNTAG DIVVGIRRNI KFAAAETKAV NNKKEEGKEN GLEVKREGFS RGGRRGMLTE KAVIEAVELA EKNLAFEVIY YPRANWCNFV VDANVVDDAM KIGWASGMRV KLPLKIDESS NSKMTFFQPQ GTISNVSSVP NWRMLQVNWD ELEILQNQNR VNPWQVELIS HTPAVHLPFL STKKPRLVQD SALFCDDKGD PFIPMIEFPK RSLNQTLLNC GYFPAGMQGA RHDHLSLSGF SNSLNDNSYS FFVNNLNIDM PTTNDLSPNN LDSLNTFETD FVETHNSNIK GVGSGSIKLF GKIIKPVESD VHDSGTKGED SSKGSNEI // ID G7K9Y1_MEDTR Unreviewed; 523 AA. AC G7K9Y1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g060630 {ECO:0000313|EMBL:AES97830.1}, GN MTR_5g460740 {ECO:0000313|EMBL:KEH28045.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES97830.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES97830.1, ECO:0000313|EnsemblPlants:AES97830, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES97830.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97830, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES97830.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH28045.1}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES97830} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97830}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES97830.1; -; Genomic_DNA. DR EMBL; CM001221; KEH28045.1; -; Genomic_DNA. DR RefSeq; XP_003614872.1; XM_003614824.1. DR RefSeq; XP_013454014.1; XM_013598560.1. DR EnsemblPlants; AES97830; AES97830; MTR_5g060630. DR EnsemblPlants; KEH28045; KEH28045; MTR_5g460740. DR GeneID; 11423354; -. DR GeneID; 25495029; -. DR Gramene; AES97830; AES97830; MTR_5g060630. DR Gramene; KEH28045; KEH28045; MTR_5g460740. DR KEGG; mtr:MTR_5g060630; -. DR KEGG; mtr:MTR_5g460740; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 58088 MW; 7C3DAA93530918BC CRC64; MSLPQPRRVD SKIWQIRAGP AVKIPKIGSK VYYFSEGHLE HACSSPNIET ELLLCLRPPS VLCIISSVDL LANLHTDEVF AKLLLTPVTT DGSVQIQEPA PPDFPDKEEN DGNNLVVQVQ EPAPPEVPDE EDDDSNNLVS YVKILTQSDT QSGLFVPREC MELIFPNLDL EDPMQSEKLS VTDIQDVVWT YKYSYHVKKL NSYKFTTGWS QFVRKKKLVA LDSVVFIKNS AGKIFVGICR KAMYPATEEE GGKSENLTEK AVKDAVELAG KNMAFQVVYY PTANWCDFVV DASVVDEAMK NGWEFGMGIK LRLNEFASSN SKKTYYQPKG TISNMSNVPS NVPSWRMLQV NWDGPDISQN PNRVNPWQVD IYPIPSQSSS PLQMPHSYPP IPPPLLPFPP TKSPRLSQSS SPLQMPFSYP PTPPPLLQSS MSTSSFIPMT ELPYSTIGSL NQTLLNSDTF PDGMLGASHD HLSASDLSKV LSDKGDGFNR NRSMVGWSGT LCDTEPRNHN SLNSFGTNEP CTK // ID G7K9Z0_MEDTR Unreviewed; 356 AA. AC G7K9Z0; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g060770 {ECO:0000313|EMBL:AES97839.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES97839.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES97839.1, ECO:0000313|EnsemblPlants:AES97839, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES97839.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97839, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES97839.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES97839} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97839}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES97839.1; -; Genomic_DNA. DR RefSeq; XP_003614881.1; XM_003614833.1. DR EnsemblPlants; AES97839; AES97839; MTR_5g060770. DR GeneID; 11442263; -. DR Gramene; AES97839; AES97839; MTR_5g060770. DR KEGG; mtr:MTR_5g060770; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 153 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 356 AA; 39514 MW; 93885303E1D042B0 CRC64; MPSCNILPCI ISAVNLFVDA LTDEVFAKLL LTPLTAQEPP PPPPVVPGQE DDDGNNLVSY FKTLTTTETK SVFNISHECA DLIFPKLDLE KSQIIIVTDL KSQEWGCTYV KNSRLRTGWS HFRKEKKLVA KDSVVFMKNS SAVLNAVEFA DKNMEFEVVY YPTVVDDAMK IGWESGMRVK LTLKKDESSN SKTYYHPKGT ISTVFNYSCN VPNWRILEDG SKILQNTNIF NPWLVEACNM TALDHAQYSS PQQIPYSSPP ITVPQLPPPP PASPFIAMPE LPNSTMGSLN QTWLDSDTFS AGMQGARHDH LSVSDDLLPQ LTGQQVRNAN FGCVRVHPYE ITSDAHGGLE GLSFSP // ID G7KA25_MEDTR Unreviewed; 399 AA. AC G7KA25; A0A0C3XLP1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g061890 {ECO:0000313|EMBL:AES97927.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES97927.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES97927.2, ECO:0000313|EnsemblPlants:AES97927, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES97927.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97927, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES97927.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES97927} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES97927}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES97927.2; -; Genomic_DNA. DR RefSeq; XP_003614969.2; XM_003614921.2. DR EnsemblPlants; AES97927; AES97927; MTR_5g061890. DR GeneID; 11427344; -. DR Gramene; AES97927; AES97927; MTR_5g061890. DR KEGG; mtr:MTR_5g061890; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 44144 MW; C2011694961C4D77 CRC64; MSLPLPPRVD PKIWQICAGP DVKIPKIHSK VYYFPRGHLE HACSSPTAAT RTILDRYRSS IPCIVSSVDL FVDPHTDEVF AKLLLTPVTD QEPPPPVVPG QEDDDGDNLV SYVKTLTQSD CTRVLCVPIE CSNLIFPKLD LDKSQSITVT DLKNQERGYT YTYSNSSRLH TGWLNFVREK KLVANDSVVF IKNSAGKISV GIRRKTKFTT DEADEGSENL TDEIKVLDAA ELAEKNTAFD VVYYPTASGW RDFVVDAKTV DDAMKIGWKS GMRVKLPLKK YESSNSKMTI SQLKGTISFV YNHSSNVPNW RMLEVNWDGL DIPQNPNLVN PWQVEVYNIP APSTSSSTVN NPRLAESSSP QQIPHSMAGS SGPMSQAPSE VSSSAYPCNI GMQSQLGAQ // ID G7KAA1_MEDTR Unreviewed; 239 AA. AC G7KAA1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Auxin response factor, putative {ECO:0000313|EMBL:AES98003.1}; GN OrderedLocusNames=MTR_5g062970 {ECO:0000313|EMBL:AES98003.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES98003.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES98003.1, ECO:0000313|EnsemblPlants:AES98003, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES98003.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES98003, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES98003.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES98003} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES98003}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES98003.1; -; Genomic_DNA. DR RefSeq; XP_003615045.1; XM_003614997.1. DR EnsemblPlants; AES98003; AES98003; MTR_5g062970. DR GeneID; 11423383; -. DR Gramene; AES98003; AES98003; MTR_5g062970. DR KEGG; mtr:MTR_5g062970; -. DR OMA; PTENENQ; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 26852 MW; 6554C9FEF79B73DE CRC64; MMLITISNRA QSSALLSDTG ELHSEAFPTK SIFTIPTKIW QKCVGASVKI PKLHSKVYYF PQGHLKHVSP HTIITLLHCY PPSISCIISA VDLLVDPHTD EVFAKLLLTP VMDGHGHEQE APPEVPAEDD DGYNVVSFVK ILTQSDCNSG CGFIVPLPCV DLILPKLSLD DPMPSQKLSV TDIQGRIWQY THIYRGKSKR HLFSRGWTSF VNNKKLVAGD SFVFIKNSAW WLMLNWHHH // ID G7KE59_MEDTR Unreviewed; 274 AA. AC G7KE59; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES98603.1}; GN OrderedLocusNames=MTR_5g070440 {ECO:0000313|EMBL:AES98603.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES98603.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES98603.1, ECO:0000313|EnsemblPlants:AES98603, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES98603.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES98603, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES98603.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES98603} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES98603}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES98603.1; -; Genomic_DNA. DR RefSeq; XP_003615645.1; XM_003615597.2. DR EnsemblPlants; AES98603; AES98603; MTR_5g070440. DR GeneID; 11408604; -. DR Gramene; AES98603; AES98603; MTR_5g070440. DR KEGG; mtr:MTR_5g070440; -. DR OMA; RSMVIIK; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES98603.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31932 MW; 58DACECF8427448B CRC64; MQPSRRKCVR ISSPEKESKH FMKAILPSPI HSKQIRIPDE FITRFGNELN NVATITVPDG RVWKMELKKR GENVFFCNKW QEFVEYYSIG YGCFISFKYE GNSKFSVIIF DATSVEISYP FETPSTNGEP KTNYPSSRKR SKVETCERLR KKVKNMSKYA SKRVEDAAKE LNPNNPYFRS KIVKGKYAYV NFDFATKYLK PNIPIKLQNS HGEQWEVFGI FHDARSSAIQ ITRGFSIFQK DNNLSYGDYC VFELIKTKPV VLKVTMFRAI DYCD // ID G7KF87_MEDTR Unreviewed; 410 AA. AC G7KF87; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g040740 {ECO:0000313|EMBL:AES96733.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES96733.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES96733.1, ECO:0000313|EnsemblPlants:AES96733, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES96733.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES96733, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES96733.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES96733} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES96733}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES96733.1; -; Genomic_DNA. DR RefSeq; XP_003613775.1; XM_003613727.1. DR EnsemblPlants; AES96733; AES96733; MTR_5g040740. DR GeneID; 11412789; -. DR Gramene; AES96733; AES96733; MTR_5g040740. DR KEGG; mtr:MTR_5g040740; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 45099 MW; D134A649E256B99A CRC64; MSPQQPIRVD PKIWQCCAGA AVKIPKLNSH VYYFPLGHLE HVSPSPNPST LSLLDRSRQF IPCTVSTVNL LADPVTDEVF VKLLLTPGTN NCVHEPPPEV REDQHDGVKV VSSGKTLTPS DANNGGAFSV PSECAKLIFP PLDLQAEKPS QKLSVTDIHG KEWKLRHVYR GTPLRHLITT NWSEFVDEKK LIGGDSLVFM KKSTRTGTET ISVGIHRQKF GAATKIAEKS VTEAVELAEK NMAFDVVYYP TAEGWCDFVV NAKVVEDAMK NKWNSGLRIK HSLKKDNSSK RCSNFEGTIS ALSAPNRPWR MLEVRTAKDS ALHNDIERDS SIPKIKFHSS TTRSFNEASL NSNALLHDTA STSSNCNTKK LSPGSIMLFG QIIRPVGSDL HDSDIKGEDG GKGCNENCLV // ID G7KF95_MEDTR Unreviewed; 524 AA. AC G7KF95; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g040880 {ECO:0000313|EMBL:AES96741.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES96741.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES96741.1, ECO:0000313|EnsemblPlants:AES96741, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES96741.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES96741, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES96741.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES96741} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES96741}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES96741.1; -; Genomic_DNA. DR RefSeq; XP_003613783.1; XM_003613735.1. DR EnsemblPlants; AES96741; AES96741; MTR_5g040880. DR GeneID; 11413246; -. DR Gramene; AES96741; AES96741; MTR_5g040880. DR KEGG; mtr:MTR_5g040880; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 524 AA; 58204 MW; 814BD7DCA805BE3E CRC64; MSSQQRRVDQ KIWQCCAGSS VKIPKLYSHV YYFPLGHLEH ICPSPNPNTL SHLDRSRPFI LCTVSAVDLL ADLCTDEVFV KLLLTPVTNK GVHEPHSLEV REDKDDDKKV VSYSKTLTPS DANNGGAFSV PVECAKLIFP PLDLNTEKPF QELSISDIHG KVWKFRHVYR GTPLRHLLTT DWSEFVDKKR LVGGDSLIFM KDSDGNISVG VRRQTKFGGA AKITEKSFTE AVELADKNLA FEVVYYPTAK GWCNFVVDAK VVEDAMNISW SLGVRIELSS KNYDSSKRCS KFEGTISALS APNCPWRMLE VKWDEPKVSQ VPERVSPWEV ETISDIFALH PQFHPTKKLK KSDPDSAAFS DKKGDSFIPN IEAFLKMVPN IEFKHFVMTS SNQTLLNNDA FLDSMQGARH GLFSTSTSSN FGNDKSNGFL GNNSMAVSSN VSSEPNTAAP ISLDLSPHSH DISNSRGTKF AGTDSSTEKV SPGSFMLFGK IIKPVRSDFQ EFDIKGNDDC EGSNEIEGIK LAQK // ID G7KFN6_MEDTR Unreviewed; 841 AA. AC G7KFN6; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g076270 {ECO:0000313|EMBL:AES99073.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES99073.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES99073.1, ECO:0000313|EnsemblPlants:AES99073, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES99073.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES99073, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES99073.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES99073} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES99073}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES99073.1; -; Genomic_DNA. DR RefSeq; XP_003616115.1; XM_003616067.2. DR EnsemblPlants; AES99073; AES99073; MTR_5g076270. DR GeneID; 11432564; -. DR Gramene; AES99073; AES99073; MTR_5g076270. DR KEGG; mtr:MTR_5g076270; -. DR OMA; VVEHTNN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 799 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 841 AA; 93283 MW; BA5EABE9B3F53208 CRC64; MKLSTSGMSQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVSATTNR EIDGQIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFFNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITSI SDMDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSFLDGRD EATNGLMWMR GGPGDHGLNA MNFQGAGLLP WMQPRLDPTL LGNDHNQQYQ AMLAAAGLQN QGNVDLLRQQ MMNFQQPFNY QQSGNLSPMQ LQQQQAIQQS VSTNNIMQPQ GQGLAENLSQ HILQKSHNNR ENQTQQHSYQ DSVLIQGDPL HQKQHSSLPS PSYTKPDFID SGMKFTASVS PGQNMLGSLS SEGSGNLLNL SRSGHSMLTE QSPQQSWASK YSPSQVDAIG NSMSHVQYSG RDTSIVPPHC SSDAQNSVLF GVNIDSSGLL LPTTVPRYTT ASAHADASTM PLGESSFQGS PYPCMQDSSE LLQSAGQVDA QNQTPIFVKV YKSGSVGRSL DISRFNSYHE LREELAQMFG IEGKFEDPLR SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDI QKMGEEAIES LGPSSGQRMN NTGAESHDIV SGLPSLGSLE Y // ID G7KGW8_MEDTR Unreviewed; 460 AA. AC G7KGW8; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_5g082140 {ECO:0000313|EMBL:AES99550.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES99550.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES99550.1, ECO:0000313|EnsemblPlants:AES99550, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES99550.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES99550, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES99550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES99550} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES99550}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001221; AES99550.1; -; Genomic_DNA. DR RefSeq; XP_003616592.1; XM_003616544.1. DR EnsemblPlants; AES99550; AES99550; MTR_5g082140. DR GeneID; 11409684; -. DR Gramene; AES99550; AES99550; MTR_5g082140. DR KEGG; mtr:MTR_5g082140; -. DR OMA; FMRRTAN; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 114 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 460 AA; 51654 MW; F7825BA613A7BF4F CRC64; MDPQEPKRVD REIWQCLAGP SFKIPKLNSQ VFYFPLGHLE HACPSPNTEA LSLINSYRPI IPCVVSDVDL LADLQTDEVF AKLILTPITN DSVHEPQEPE VRENEHGGDR LVFSGKTLTQ SDANNGGAFS VPSECAKLIF PPLDLTSPMP SQVLPIKDIH NFVWNFRHTY RGSPKRHLIT TKWSKFVDTK KIIGGDSLVL MKISKDKDKD KIFIGIRRHK LSAAAKITEK SVMEAAELAD KNMTFEVIYY PTASHWCNFV VDAEAVKKAM QINWQSGMRV KHCLKTDESS KRSSIFQGTV SALSDPSHHP WRMLQVNWDE SEVSQNPSQV SPWQIELISH TPALPLQFPP QKKLRIAHVS ALSTNIERPS IPEIEFNFFN PASMNCDAFL NSMQGTRPNL FSASTSSTSL NDNDNGFVEG THNLNTKKVN PRSIKLFGKT IEVVEKDLHE SRINGEDGSD // ID G7KI94_MEDTR Unreviewed; 339 AA. AC G7KI94; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES75303.1}; GN OrderedLocusNames=MTR_6g036740 {ECO:0000313|EMBL:AES75303.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES75303.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES75303.1, ECO:0000313|EnsemblPlants:AES75303, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES75303.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES75303, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES75303.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES75303} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES75303}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001222; AES75303.1; -; Genomic_DNA. DR RefSeq; XP_003619085.1; XM_003619037.1. DR EnsemblPlants; AES75303; AES75303; MTR_6g036740. DR GeneID; 11428015; -. DR Gramene; AES75303; AES75303; MTR_6g036740. DR KEGG; mtr:MTR_6g036740; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000002051; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES75303.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38458 MW; 033FCD5563285D44 CRC64; MAALLNGSIK QVLDCVTTDI LGLIVGYSRF HQDIGYSDKV WNINFDSQAE QRDSNGSETN NSVEEINTEL HWLYLLKLSI KRLLILPSNQ PAKEPKTAHW VICQWFSYYE YTPSIFDPKC NTKIFLHNLK GEHWIVNSVT KTKIHTSHSL CGGWTDFVCG NSIKVGDVCI LKLIQECEFR VRIITKVRKD WLAPAYEEAL NADLPTIPLN TTQHMGGIKK VIHVAFTHLA LSVGDITSGN GDSFYVCKNV GDDRRLLYTG SCAEILNMKN SQELKKEFLW AEVSLVELKL VPMRVVSCSL KKSTCMGSSY RNERRIEEIE FRVYGGGIKD VAMYWPPSP // ID G7KVV4_MEDTR Unreviewed; 315 AA. AC G7KVV4; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES78881.1}; GN OrderedLocusNames=MTR_7g050560 {ECO:0000313|EMBL:AES78881.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES78881.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES78881.1, ECO:0000313|EnsemblPlants:AES78881, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES78881.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78881, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES78881.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES78881} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78881}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; AES78881.1; -; Genomic_DNA. DR RefSeq; XP_003622663.1; XM_003622615.1. DR EnsemblPlants; AES78881; AES78881; MTR_7g050560. DR GeneID; 11437270; -. DR Gramene; AES78881; AES78881; MTR_7g050560. DR KEGG; mtr:MTR_7g050560; -. DR OMA; ILTINIH; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES78881.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 36267 MW; F8A8688C12C3CCFE CRC64; MASETLELKP IHFFKIILAQ NLQEGKLMMP RKFVEKYGEG LSNAIYLKTP NGAKWKLNLL KINGKIWFEK GWKEFAEHHS LAHGHLLLFK YLRNSRFLVR IFEKSALEIN YPFQRVAAKN VSNGQKRKAN SSFEFHQPCE IGSNSCVEVD KLNKVATLHH AGRESKGKQV LATKRVTALE RAQSFKTCNP SFVVVMRASY VEHRFLVNIP RKFGNRHFDL DKKRGDVYLV LNEGIWPAKY LIRMTLKGPH FDLTTGWKAF AKDNKLKVDD VCKFELISCT ILTFIVHIFR ETDNDNTNCS ASQKFSQVKE EASQG // ID G7KVV6_MEDTR Unreviewed; 315 AA. AC G7KVV6; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES78883.1}; GN OrderedLocusNames=MTR_7g050580 {ECO:0000313|EMBL:AES78883.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES78883.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES78883.1, ECO:0000313|EnsemblPlants:AES78883, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES78883.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78883, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES78883.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES78883} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78883}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; AES78883.1; -; Genomic_DNA. DR RefSeq; XP_003622665.1; XM_003622617.1. DR EnsemblPlants; AES78883; AES78883; MTR_7g050580. DR GeneID; 11446380; -. DR Gramene; AES78883; AES78883; MTR_7g050580. DR KEGG; mtr:MTR_7g050580; -. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES78883.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 191 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 191 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 36083 MW; BF0A2CEA8E032A6D CRC64; MASEIPEVRP THFFKIILAQ NLHEGKLMMP RKFVEKYGKS LPKETCLKTP NGGKWKLNLV KSDGKIWFEK GWKQFAEHHS LAHGHLLLFR YEKTSNFEVH IFEKSALETN YPSKRVEAKT ISNDQGNESL NGENCRAAQK RKANSFEFGS SSCVKVGKSQ KKSKGKQVIT AAEKVTTLER AKSFKIRNPS FVVVMRASYV EHKFLMNIPR KFGNRHFDLD KKRGDIHFQV LNEGVWPTRF SIRKSRTGLQ FEITGGWKAF AEDNKLKVGD VCKFELISCT ILTFIVHIFR ETDNDNTNCS ASQKFSQVKE EASQG // ID G7KVV7_MEDTR Unreviewed; 297 AA. AC G7KVV7; A0A0C3W5I5; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 33. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:AES78884.2}; GN OrderedLocusNames=MTR_7g050590 {ECO:0000313|EMBL:AES78884.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES78884.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES78884.2, ECO:0000313|EnsemblPlants:AES78884, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES78884.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78884, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES78884.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES78884} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78884}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; AES78884.2; -; Genomic_DNA. DR RefSeq; XP_003622666.2; XM_003622618.2. DR EnsemblPlants; AES78884; AES78884; MTR_7g050590. DR GeneID; 11435758; -. DR Gramene; AES78884; AES78884; MTR_7g050590. DR KEGG; mtr:MTR_7g050590; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 180 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 34413 MW; 8F24A27C753F2F33 CRC64; MMPRKFVEKY GEGLSKAIYL KTPNGAKWKL NLVKSDGKIW FEKGWKEFAK HHSLAHGHLL LFKYKRNSHF LVHIFEKSAF EINYPFQRVA AKTNRVSNGQ GNKPPNGESR RASQKRKDNS FELHQPCDIG SSSCFRVEKL QKVASLHHTD RESKGKEVIT GKRVTALERA QSFKTSNPSF VVVMRASYVK HHFLLNIPRS FGNRHFDLDK KRGDIYFQVL NKGVWPAKYS IKKTRNGLHF ELMTTGWKAF AKDNKLKVDD VCKFELISCT ILTFIVHIFR ETDNDNTNCS TFQSRIN // ID G7KVW1_MEDTR Unreviewed; 116 AA. AC G7KVW1; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES78888.1}; GN OrderedLocusNames=MTR_7g050640 {ECO:0000313|EMBL:AES78888.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES78888.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES78888.1, ECO:0000313|EnsemblPlants:AES78888, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES78888.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78888, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES78888.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES78888} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78888}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; AES78888.1; -; Genomic_DNA. DR RefSeq; XP_003622670.1; XM_003622622.1. DR EnsemblPlants; AES78888; AES78888; MTR_7g050640. DR GeneID; 11437271; -. DR Gramene; AES78888; AES78888; MTR_7g050640. DR KEGG; mtr:MTR_7g050640; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES78888.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 116 AA; 13934 MW; 90E95372D2E537B5 CRC64; MANEFPHVKQ FHFFKIITIQ SLLVGKLMIP RKFVEKYRNC LPNAIYLKTP SGAKWKLDLV KIDGKIWFQK GWKQFAKYHN LAQYHLLIFK YERTSHFHVH IFEKSANRDK IPFPNS // ID G7KVW6_MEDTR Unreviewed; 324 AA. AC G7KVW6; A0A0C3W5J4; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES78893.2}; GN OrderedLocusNames=MTR_7g050710 {ECO:0000313|EMBL:AES78893.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES78893.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES78893.2, ECO:0000313|EnsemblPlants:AES78893, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES78893.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78893, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES78893.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES78893} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78893}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; AES78893.2; -; Genomic_DNA. DR RefSeq; XP_003622675.2; XM_003622627.2. DR EnsemblPlants; AES78893; AES78893; MTR_7g050710. DR GeneID; 11439035; -. DR Gramene; AES78893; AES78893; MTR_7g050710. DR KEGG; mtr:MTR_7g050710; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES78893.2}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 37063 MW; 8FE2B0C6346AA1C6 CRC64; MASEIAEVKP IQFFKIILAQ NLLQGNLRMP RKFVEKYGKG LPKAICLKTP NGAKWRLNLV KSDGKIWFEK GWKQFAEHHS IGHGHLLLFR YEKTSKFEVQ IFGKSALEID YSFKRVESKK FSNGQGNKPP NGENCRAAQK RKANSSSEFH RQCEIASSSC VKFGKSQKLA VQQVDRMSNG KQVITTAKKV TTLERAQSFK ICNPSFVVVM GASYVERRFL LNIPCLFGKT HFDLNKKRED IQLQALNGRV WSARYSTRNR TSDNGIRFEL TSGWEEFAKD NNLKVGDVCK FELISSTILT FIVHVFRETD NDKKKCSTSQ SRMN // ID G7KVW7_MEDTR Unreviewed; 320 AA. AC G7KVW7; A0A0C3W5J5; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 07-JUN-2017, entry version 33. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:AES78894.2}; GN OrderedLocusNames=MTR_7g050720 {ECO:0000313|EMBL:AES78894.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES78894.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES78894.2, ECO:0000313|EnsemblPlants:AES78894, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES78894.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78894, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES78894.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES78894} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES78894}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; AES78894.2; -; Genomic_DNA. DR RefSeq; XP_003622676.2; XM_003622628.2. DR EnsemblPlants; AES78894; AES78894; MTR_7g050720. DR GeneID; 11439036; -. DR Gramene; AES78894; AES78894; MTR_7g050720. DR KEGG; mtr:MTR_7g050720; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36767 MW; 55D93F04EBD07381 CRC64; MANEFPPTHF FKIICDQSLH QGKLIIPRKF VEKYGEGLSN AIYLKTPNGA KWKLNLVKSD GKIWFEKGWK EFVKYHSLSQ GHLLLFKYGR TSHFHVHIFD KSALEIKYPS QRVESKRVSN DLGNKPQNDE DLEDYIASKK RKTNLSFEFN QPYEIGSNSC VNVGKLEKVA ALNHIDKKCK GCLNFAGKQL AIAKKVTTFD RANSMRTCNP SFIAVMHPSY IDAACNLHIP SEFGKRHLLG LGKKKGDIHL RLLNGKVWPA RYLIRKGNRK GEKFEMYSSE WKTFAEDNNL KVGDVCTFEL FPTSTILTFI VHIFRDSFEI // ID G7KY51_MEDTR Unreviewed; 361 AA. AC G7KY51; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=B3 domain transcription repressor VAL2 {ECO:0000313|EMBL:AES79839.1}; GN OrderedLocusNames=MTR_7g073240 {ECO:0000313|EMBL:AES79839.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES79839.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES79839.1, ECO:0000313|EnsemblPlants:AES79839, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES79839.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES79839, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES79839.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES79839} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES79839}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001223; AES79839.1; -; Genomic_DNA. DR RefSeq; XP_003623621.1; XM_003623573.1. DR EnsemblPlants; AES79839; AES79839; MTR_7g073240. DR GeneID; 11428698; -. DR Gramene; AES79839; AES79839; MTR_7g073240. DR KEGG; mtr:MTR_7g073240; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41117 MW; A227E64B2F110470 CRC64; MKVREIYESL ARTNLSMTLN TPFGNSNSFG GGEKQQQTEN SIPNLSEAQP KSQNLLHKLP KSTLATESEK NVCLASPIHH VARKSPVRRQ RKHISARNLP KITDQELQQL SGDLNSAVVP LFEKTLTASD VGRLGRMVLP KSCVETYFPP ISEPGGVYLQ IEDVKGKKLV FKFRFWPNNS SRIYVLEGVH AWIQSMQLQV GDFVTFNRMD PGEKLIIGFR RASVSSIQVN NIAMSKGMKR KRLCLPQELV VPKKKRTCDI ESKRNKSLLI DNQETLMLKL TWEEAQDFLH PPPTVNSNIV VIEDHVFEEY EEPPIIAKKG IFINGMKEQW IQCDKCSEWR KLESVENLWG QRRCSCSAPM N // ID G7L911_MEDTR Unreviewed; 498 AA. AC G7L911; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:AET05311.1}; GN OrderedLocusNames=MTR_8g103940 {ECO:0000313|EMBL:AET05311.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AET05311.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AET05311.1, ECO:0000313|EnsemblPlants:AET05311, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AET05311.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05311, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AET05311.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AET05311} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05311}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; AET05311.1; -; Genomic_DNA. DR RefSeq; XP_003630835.1; XM_003630787.1. DR EnsemblPlants; AET05311; AET05311; MTR_8g103940. DR GeneID; 11415772; -. DR Gramene; AET05311; AET05311; MTR_8g103940. DR KEGG; mtr:MTR_8g103940; -. DR OMA; QHTTHAM; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 241 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 443 497 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 241 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 443 497 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 498 AA; 57359 MW; C898578BCAF91AE3 CRC64; MPPMHRKGDR SVSINTIHHN SEDLSMTCNP RNMHSFIRFF KIVTSTNIQD GTLKIPDAFT KKYSGDLSNP MFLKTPDDKK WEVHLTKKDG DIWIHKGWNE FATHYSIDHG HMLMFQYEKT SHFKIYIFNK STLEIEYHVD GNNQHEQNNL VENLDEKPTC KKTRPKSQIS SLQPHKKSRI GASKDVGTSS KLKKNPKLVQ VKEESEDTTE CLNVNDQEPK NSTSKIAEAL NKAKNYKTNN PFFTVVMTYS YANKYMYIPV DFEQKYMKEK QSVIVLQVLD NGRTWNVKHW GRHVSTGWKK FAFDNNLKVG DVCLFEMIKS NAYAFKVLIF RLGEEHSLPP QVHGDGVNWV ETARIPGVEC KTMSYKGKKA TQNSLHASSC SFKSSEVKKE SDQFASTLKN PHFTIKVISS HADVYKPRIH NSFSEKYLCH KKIVTLQFNK NLWHVRLASC PSEPSTKLST GWSKFVEENK LEAGDVCVFE LVNKEDLVFD AHIFRGCN // ID G7LIT1_MEDTR Unreviewed; 833 AA. AC G7LIT1; A0A0C3Y715; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 05-JUL-2017, entry version 44. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g100050 {ECO:0000313|EMBL:AET05059.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AET05059.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AET05059.2, ECO:0000313|EnsemblPlants:AET05059, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AET05059.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05059, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AET05059.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AET05059} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05059}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; AET05059.2; -; Genomic_DNA. DR RefSeq; XP_003630583.2; XM_003630535.2. DR SMR; G7LIT1; -. DR EnsemblPlants; AET05059; AET05059; MTR_8g100050. DR GeneID; 11439423; -. DR Gramene; AET05059; AET05059; MTR_8g100050. DR KEGG; mtr:MTR_8g100050; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IEA:EnsemblPlants. DR GO; GO:0010047; P:fruit dehiscence; IEA:EnsemblPlants. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0008285; P:negative regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0048481; P:plant ovule development; IEA:EnsemblPlants. DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants. DR GO; GO:1903288; P:positive regulation of potassium ion import; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 710 792 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 833 AA; 93075 MW; 5A1D30D8ECDCB497 CRC64; MFGMRDLEEE RNMASSEVSM KGNSVNGKGE NNVDGVGDAQ NGSSSSSTGR EAEAALYREL WHACAGPLVT VPREGELVFY FPQGHIEQVE ASTNQASEQH MPVYDLRPKI LCRVINVMLK AEPDTDEVFA QVTLVPEPNQ DENAVEKEAP PAPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELVAKDLHGN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AVLTGTMFTV YYKPRTSPAE FIVPYDQYME SLKNNYTIGM RFKMRFEGEE APEQRFTGTI VGIEDSDSKR WPTSKWRCLK VRWDETSNIP RPERVSPWKI EPALAPPALN PLPMPRPKRP RANVVPSSPD SSVLTREASS KVSMDPLPTS GFQRVLQGQE SSTLRGNLAE SNDSYTAEKS VAWTPATDEE KMDAVSTSRR YGSENWMPMS RQEPTYSDLL SGFGSTREGK HNMLTQWPVM PPGLSLNFLH SNMKGSAQGS DNATYQAQGN MRYSAFGDYS VLHGHKVENP HGNFLMPPPP PTQYESPHSR ELSQKQMSAK ISEAAKPKDS DCKLFGFSLL SSPTMLEPSL SQRNATSETS SHMQISSQHH TFENDQKSEH SKSSKPADKL VIVDEHEKQL QTSQPHVKDV QLKPQSGSAR SCTKVHKKGI ALGRSVDLTK FSDYDELTAE LDQLFEFRGE LISPQKDWLV VFTDNEGDMM LVGDDPWQEF CSMVRKIYIY PKEEIQKMSP GTLSSKNEEN HSATDGGDAQ ETKSQLNQSA SDN // ID G7LIT3_MEDTR Unreviewed; 727 AA. AC G7LIT3; A0A0C3Y717; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 01-OCT-2014, sequence version 2. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g100050 {ECO:0000313|EMBL:AET05061.2}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AET05061.2, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AET05061.2, ECO:0000313|EnsemblPlants:AET05061, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AET05061.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05061, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AET05061.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AET05061} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05061}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; AET05061.2; -; Genomic_DNA. DR RefSeq; XP_003630585.2; XM_003630537.2. DR EnsemblPlants; AET05061; AET05061; MTR_8g100050. DR GeneID; 11439423; -. DR Gramene; AET05061; AET05061; MTR_8g100050. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 727 AA; 81045 MW; 482193960AF1021B CRC64; MFGMRDLEEE RNMASSEVSM KGNSVNGKGE NNVDGVGDAQ NGSSSSSTGR EAEAALYREL WHACAGPLVT VPREGELVFY FPQGHIEQVE ASTNQASEQH MPVYDLRPKI LCRVINVMLK AEPDTDEVFA QVTLVPEPNQ DENAVEKEAP PAPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELVAKDLHGN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AVLTGTMFTV YYKPRTSPAE FIVPYDQYME SLKNNYTIGM RFKMRFEGEE APEQRFTGTI VGIEDSDSKR WPTSKWRCLK VRWDETSNIP RPERVSPWKI EPALAPPALN PLPMPRPKRP RANVVPSSPD SSVLTREASS KVSMDPLPTS GFQRVLQGQE SSTLRGNLAE SNDSYTAEKS VAWTPATDEE KMDAVSTSRR YGSENWMPMS RQEPTYSDLL SGFGSTREGK HNMLTQWPVM PPGLSLNFLH SNMKGSAQGS DNATYQAQGN MRYSAFGDYS VLHGHKVENP HGNFLMPPPP PTQYESPHSR ELSQKQMSAK ISEAAKPKDS DCKLFGFSLL SSPTMLEPSL SQRNATSETS SHMQISSQHH TFENDQKSEH SKSSKPADKL VIVDEHEKQL QTSQPHVKDV QLKPQSGSAR SCTKVSICIV IVTFLTK // ID G7LIV9_MEDTR Unreviewed; 1096 AA. AC G7LIV9; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_8g101360 {ECO:0000313|EMBL:AET05087.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AET05087.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AET05087.1, ECO:0000313|EnsemblPlants:AET05087, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AET05087.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05087, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AET05087.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AET05087} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET05087}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001224; AET05087.1; -; Genomic_DNA. DR RefSeq; XP_003630611.1; XM_003630563.2. DR EnsemblPlants; AET05087; AET05087; MTR_8g101360. DR GeneID; 11436511; -. DR Gramene; AET05087; AET05087; MTR_8g101360. DR KEGG; mtr:MTR_8g101360; -. DR OMA; AVYSHQI; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000002051; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 984 1068 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1096 AA; 121074 MW; 92AD1C47AA855A85 CRC64; MTTTLEEGPS AAIAAVASEG EDKNDGGVNS ELWQACAGPL VNLPLPGTHV VYFPQGHSEQ VAASLKKDGD VQVPNYSNLP SKLPCTLHSL TLHADSDTDE VYARMTLQPV SSFDMDAILR SDISLKSNKP QPEFFCKQLT ASDTSTHGGF SVPRRAAEKI FPPLDFSAQP PAQELVAKDL HGNVWKFRHI YRGQPKRHLL TTGWSLFISG KRLLAGDSVL FIRDEKQQLL LGIRRANRQP TNLSSSVLSS DSMHIGILAA AAHASANNSP FTVFYNPRAS PSEFVIPLAK YYRAVYSHQI SPGMRFRMMF ETEDSGTRRY MGTVIGVSDL DSVRWKNSQW RNLQVGWDEA TAGERRSRVS IWEIEPVTAP FFICPPPFFR PKRPRQPGMP DDESFDFSNL FKNTMPWLGD DMCMKDPQAF PGMSLAQWMN IQQNPAMVSS LQPNHVPSMP ASVVQNLPGS DIAHQLGFST QQISQSNNVA FNAPGMPQMP LSTSSGLGAV MQPEQHSRQN LAYQTLPQSQ VQTQLLNPQS IVQTNNILQS QQPSIQNNQL HRSLSQNPLQ QFQQTIIGQN QPQNMIRPTM PDHINQQLHM SDNQVRLQLL QKLQQQQQTL LSQQSALQQP AQIIQNHDQQ RQELDVTHNS RAITPRQVFE IPHTLQNSLL EANSMNHQMT DHSSQNNVQF SHPAKQQKLQ HQQQQTQPGS LSKMSSHVGL PSATTANQLS ASGCSIRTVA TGTVPSVNTD HAPSCSTSPS TNNCVGALPP VTTSQILMST IGDDVAQSAV TILSQSSNAN VVKYAQPNYD VKPCLNISEN HNPVNFYPQT CLNGAAIQTD CLDTSSSTTS VCLSQSDSRF HQTDRPVSYY PQSMFSRDNI QNVEVQADAR CNVAYGNSMN GQMRMPLNLD STVTKGTARL GKDLSNDFSS GGLLGGYENN GDAQPELSSS MVSQTWGVPD MTFNSIDSTI NDSGFLDSGP WAPRPPPHQF QRIRTYTKVY KRGAVGRSID ITRYSGYDEL KHDLARRFGI EGQLEDRQRV GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ QMSLDGDFGN GGLPRQASSS SDGGIA // ID G8A2Z2_MEDTR Unreviewed; 281 AA. AC G8A2Z2; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES70706.1}; GN OrderedLocusNames=MTR_3g061370 {ECO:0000313|EMBL:AES70706.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EnsemblPlants:AES70706}; RN [1] {ECO:0000313|EMBL:AES70706.1, ECO:0000313|EnsemblPlants:AES70706, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70706.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70706, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70706.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70706} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70706}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70706.1; -; Genomic_DNA. DR RefSeq; XP_003600455.1; XM_003600407.2. DR EnsemblPlants; AES70706; AES70706; MTR_3g061370. DR GeneID; 11438683; -. DR Gramene; AES70706; AES70706; MTR_3g061370. DR KEGG; mtr:MTR_3g061370; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES70706.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 32578 MW; 30A683C4DF8EF421 CRC64; MARGNSIRFF KIILQTNLHR IQIPSKFTKR HGVGLSNPVV IKTPDDTKWK VYWKKINGEI WFEKGWKTFT ENYSLGHGCL VVFEYKGTFK FDVVILGKNA LEIDYDTSCD SDDENDNVDH SDDDESVEIL DEWLNRKKAR QRSPFVSSRP HKKVQGDDEK TTKRTSSMNW PKDVRAQEVA QNFISCNPFF TILIKPINLV EHTRSVPDLK GVIENKDTNV MLLIGKRSWN VKLLRSYEGK NGRRLSAGWY LFARESGLKS GDVCVFELIN KKDLVFKIHV Y // ID G8A2Z4_MEDTR Unreviewed; 284 AA. AC G8A2Z4; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES70704.1}; GN OrderedLocusNames=MTR_3g061350 {ECO:0000313|EMBL:AES70704.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES70704.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES70704.1, ECO:0000313|EnsemblPlants:AES70704, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70704.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70704, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70704.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70704} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70704}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70704.1; -; Genomic_DNA. DR RefSeq; XP_003600453.1; XM_003600405.1. DR EnsemblPlants; AES70704; AES70704; MTR_3g061350. DR GeneID; 11440147; -. DR Gramene; AES70704; AES70704; MTR_3g061350. DR KEGG; mtr:MTR_3g061350; -. DR OMA; TENCLME; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES70704.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 32885 MW; 85F0DC090DCB6EC9 CRC64; MAREDSILPI LFFKIILQTN LQRIQLPNKF TRKHGVGLSN PVLIKLPDGT GWKVYWKKIN GEMWFEKGWK TFTENYSLEH GCLVMFEYKG TSKFDVVILG QNAVEIDYDS SSDTNDENDN VDHSDDDESV EILDEWLNRK KARQRSPFIS TRPHKKVRGD HEKTTKRTSS INWPKNARAQ EVAQNFISCN PFFTVLINPN DLEANQLSVP DLKGVIENKD TNVMLLIGKR SWNVKLLRCY EGKYNRRLSA GWHLFLTESG LKSGDVCVFE LINKKDLVFK VHVY // ID G8A2Z5_MEDTR Unreviewed; 274 AA. AC G8A2Z5; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:AES70703.1}; GN OrderedLocusNames=MTR_3g061340 {ECO:0000313|EMBL:AES70703.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EnsemblPlants:AES70703}; RN [1] {ECO:0000313|EMBL:AES70703.1, ECO:0000313|EnsemblPlants:AES70703, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70703.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70703, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70703.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70703} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70703}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70703.1; -; Genomic_DNA. DR RefSeq; XP_003600452.1; XM_003600404.1. DR EnsemblPlants; AES70703; AES70703; MTR_3g061340. DR GeneID; 11438033; -. DR Gramene; AES70703; AES70703; MTR_3g061340. DR KEGG; mtr:MTR_3g061340; -. DR OMA; HTHEAPN; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 182 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 182 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31704 MW; 1DCA59FD15DA5E3B CRC64; MARGKTTLPF RFFKIILQTN LQRIKIPNEF TRRHGVGLSN PVLIKPPDGT KWKVYWKKIN GEIWFEKGWK TFTENYSLGH GFLVLFNYEE GTSKFLVHIL GKNAVEIDYD ENVDHSDDES CQILDEWPNQ KTGRRPPLDS PRPRKKVRGE IKKTTERTTS LNWPMGARAR EVAAKFISSN PFFTILIKPN HLVETRLCVP NLEGVIENKE KYVVLQIGKR SWNVKLLRYY EAKNGRHLSA GWSLFASESG LQSGDVCVFE LTNKQDLVFK IHVL // ID G8A2Z6_MEDTR Unreviewed; 251 AA. AC G8A2Z6; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES70702.1}; GN OrderedLocusNames=MTR_3g061330 {ECO:0000313|EMBL:AES70702.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EnsemblPlants:AES70702}; RN [1] {ECO:0000313|EMBL:AES70702.1, ECO:0000313|EnsemblPlants:AES70702, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70702.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70702, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70702.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70702} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70702}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70702.1; -; Genomic_DNA. DR RefSeq; XP_003600451.1; XM_003600403.1. DR EnsemblPlants; AES70702; AES70702; MTR_3g061330. DR GeneID; 11443561; -. DR Gramene; AES70702; AES70702; MTR_3g061330. DR KEGG; mtr:MTR_3g061330; -. DR OrthoDB; \N; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES70702.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 29430 MW; 395C844728EBEA99 CRC64; MARRNSTLPI RFFKIILQTN LHRIQIPNKF TRRYGVHLSN PVLIKPPDGT KWKVYWKKIN GEIWFEKGWK YFTENYSLGH GSLVVFEYKR TSKFDVHIFG RNAVEIDYSS CDSDDENDNV DHSDDDESVE ILDEWLNWKK AKQRSPFVSP RPHKKVRGDD EKTTKRTSSI NWPKDVRAQK VAQNFISNNP FFTILIKPNH IADSQLFVPL DLKGIIENKE KNVLLQIGKK SWNVKLLRYS EILNGRRLSA G // ID G8A2Z9_MEDTR Unreviewed; 127 AA. AC G8A2Z9; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=B3 DNA-binding domain protein {ECO:0000313|EMBL:AES70699.1}; GN OrderedLocusNames=MTR_3g061300 {ECO:0000313|EMBL:AES70699.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES70699.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES70699.1, ECO:0000313|EnsemblPlants:AES70699, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70699.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70699, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70699.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70699} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70699}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70699.1; -; Genomic_DNA. DR RefSeq; XP_003600448.1; XM_003600400.1. DR EnsemblPlants; AES70699; AES70699; MTR_3g061300. DR GeneID; 11442746; -. DR Gramene; AES70699; AES70699; MTR_3g061300. DR KEGG; mtr:MTR_3g061300; -. DR OMA; ILINPTH; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES70699.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 127 AA; 14511 MW; C846F6737DC9ADF8 CRC64; MKTSERTTSW NWPKGARAQE VALKFISTNP FFTILINPTH LAENRVCVPT LNGVIENKEK YVMLQIGKRS WNLKLLPYCE ARNVRRLSAG WSLFARESGL QAGDVCVFEL INKKDLVFNI HITKSDS // ID G8A300_MEDTR Unreviewed; 203 AA. AC G8A300; DT 25-JAN-2012, integrated into UniProtKB/TrEMBL. DT 25-JAN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Plant-specific B3-DNA-binding domain protein {ECO:0000313|EMBL:AES70698.1}; GN OrderedLocusNames=MTR_3g061290 {ECO:0000313|EMBL:AES70698.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AES70698.1, ECO:0000313|Proteomes:UP000002051}; RN [1] {ECO:0000313|EMBL:AES70698.1, ECO:0000313|EnsemblPlants:AES70698, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES70698.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70698, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [2] {ECO:0000313|EMBL:AES70698.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [3] {ECO:0000313|EnsemblPlants:AES70698} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES70698}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001219; AES70698.1; -; Genomic_DNA. DR RefSeq; XP_003600447.1; XM_003600399.1. DR EnsemblPlants; AES70698; AES70698; MTR_3g061290. DR GeneID; 11446527; -. DR Gramene; AES70698; AES70698; MTR_3g061290. DR KEGG; mtr:MTR_3g061290; -. DR OMA; FINTMRI; -. DR Proteomes; UP000002051; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AES70698.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 203 AA; 23820 MW; C5556C7C8E1F06FF CRC64; MARRNATFPI HFFKIILQSN LQRLKIPHKF TKKHGVGLSN PVLIKPPDGT KWKVYWKKID GEIWFEKGWK YFTENYSLGH GSLVVFEYKG TSKFDVVILG RNAVEIDYDT SCDTDDENDN VGHSDDESVE ILDEWPNQKS TGKRSPLFSP RPYKKVRGEI GKRERTCREI GEKFKTSPVW LQRERGKRDQ NMWDPWLFLV SPK // ID H9B4B9_BRARP Unreviewed; 665 AA. AC H9B4B9; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF1 {ECO:0000313|EMBL:AFD01292.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01292.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra035427.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035427.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01292.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01292.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra035427.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035427.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979458; AFD01292.1; -; mRNA. DR STRING; 3711.Bra035427.1-P; -. DR EnsemblPlants; Bra035427.1; Bra035427.1-P; Bra035427. DR Gramene; Bra035427.1; Bra035427.1-P; Bra035427. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 635 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 73797 MW; 10F755C1F5D0F8EB CRC64; MAASNHPCGK PGGALSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE ADQSEPMSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKNQKLAV GMRFKMRFEG EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANNT PSAHLPPQRN KRPRPPGLLS PTTAPSTPVT ADGVWKSPAD NPSSVPLFSP PAKTAAFGLG GNKSFGVSIG SAFWPTHADG AAESFASALN NESPTEKKQT NGNVCRLFGF ELVENMNVDE CFSAASVSGA VAVDQPVPSN EFDSGQQSES LNINQANLPS GSGDHEKSSL RSPQKSQSRQ IRSCTKVHMQ GSAVGRAVDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLTVNV RMQPKTDADE NGNTEGRSSS MAGSR // ID H9B4C1_BRARP Unreviewed; 851 AA. AC H9B4C1; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF2-2 {ECO:0000313|EMBL:AFD01294.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01294.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra010048.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010048.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01294.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01294.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra010048.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010048.1-P}; RG EnsemblPlants; RL Submitted (FEB-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979460; AFD01294.1; -; mRNA. DR STRING; 3711.Bra010048.1-P; -. DR EnsemblPlants; Bra010048.1; Bra010048.1-P; Bra010048. DR Gramene; Bra010048.1; Bra010048.1-P; Bra010048. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 725 823 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 94610 MW; 2104DCD3548FD1CB CRC64; MASSDVSMKG NRGGGENFSS LGYSGPTGAA GESLKTQSNR SVAAERVVDP DAALYRELWH ACAGPLVTVP RQDDRVFYFP QGHIEQVEAS TNQAAEQQMP LYDLPSKILC RVINVDLKAE ADTDEVYAQI TLLPEPVQDE NAIEKESPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHASEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRTSPSEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDSDPTRWA KSKWRSLKVR WDETTSIPRP DRVSPWKIEP ALSPPALSPV PMPRPKRPRS NLAPSTPDSS MRIREGSSKA NMDPLPASGL SRVLQGQEYP TLRTKHVESG ECDAPENSVV WQSSADDDKV DVVSASRRYE NWISSGRHGP TCTDLLSGFG TNIEPPHGHQ IPFYDRLSSS SPSVAARKIL SDQDGKFEYL ANQWQMMHSG LSLKLHESPK VPAASDASFQ GIGNPNYGEY ALPRAVTTEN AAGNWPIRPR ALNYFEEAVH AQTREHVTKR PAVVEEEAAK PRDGNCRLFG IPLVNNVNGT DTTLSQRNNL NDCTGPTQIA SPKVQDLSDQ SKGSKSTNDH REQGRPFPVN KPHPKDVQTK TNSCRSCTKV QKQGIALGRS VDLSKFQNYE ELVTELDRLF EFNGELMAPK KDWLIVYTDD ENDMMLVGDD PWQEFCCMVR KIFIYTKEEV RKMNPGTLSC RNEEEPVVGE GSDAKDAKSA SNPSLSSAGN S // ID H9B4C2_BRARP Unreviewed; 888 AA. AC H9B4C2; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF2-3 {ECO:0000313|EMBL:AFD01295.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01295.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra035910.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035910.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01295.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01295.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra035910.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035910.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979461; AFD01295.1; -; mRNA. DR STRING; 3711.Bra035910.1-P; -. DR EnsemblPlants; Bra035910.1; Bra035910.1-P; Bra035910. DR Gramene; Bra035910.1; Bra035910.1-P; Bra035910. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 16 {ECO:0000256|SAM:SignalP}. FT CHAIN 17 888 Auxin response factor. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5007666886. FT DOMAIN 192 294 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 762 844 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 192 294 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 888 AA; 99045 MW; C7EE95899746BDF9 CRC64; MVMISILLNL PYVCNSDKRA EEDEDESRSC HISKSRFDSR VSSSLLALLD ETDLRCMTSS EALNVAVSGE GQKGHSSRVV DAEAALYREL WHACAGPLVT VPRQDDRVFY FPQGHIEQVE ASTNQAAEQQ MPLYDLPSKI LCRVINVDLK AEVDSDEVYA QITLLPEAIQ DENAIEKEAP PPPPPRFQVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHAN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV SSSVISSHSM HLGVLATAWH AISTGTMFSV YYKPRTSPSE FIVPFDQYME SVKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPTR WAKSKWRSLK VRWDETSSIP RPDRVSPWKL EPALAPPALS PVPMPRPKRP RSNIAPSSPD SSVLIREGSA MGNKDPLPAS GLSRVLQGQE HPTLRTKHTE TVECDAPESS VVWQSSADDD KVDVVSASAS RRYENWMSSG RHESAYTDLL SGFGANIDPS PGHQIPFYDH SSLPFVAANK FIGDRDGKFD YFANQWQMMH SGLSLTLHES PKIPAASDTS FQGGRGNAKY GEYPGLHSLT TENAGGNWPI RPRAVNYFEE AVQAHAQAQA REHVTKRPEM VEDTAKSRDG NCRLFGIPLV NNVNVTESTM SPRNNFNDTA GLTQMTSPKV QDLSDQSKGS KSTNDQREQG RPFQANHHPH PKDVHTKTHS SRSCTKVQKQ GIALGRSVDL SKFQNYEELI AELDRMFEFN GELMAPKKDW LIVYTDDEND MMLVGDDPWQ EFCGMVRKIS IYTKEEVRKM NPGTLSCRSE EEAVVGEGSD PKDAKSASNP SLSSAGHS // ID H9B4C3_BRARP Unreviewed; 605 AA. AC H9B4C3; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF3-1 {ECO:0000313|EMBL:AFD01296.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01296.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra005465.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005465.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01296.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01296.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra005465.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005465.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979462; AFD01296.1; -; mRNA. DR STRING; 3711.Bra005465.1-P; -. DR EnsemblPlants; Bra005465.1; Bra005465.1-P; Bra005465. DR Gramene; Bra005465.1; Bra005465.1-P; Bra005465. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 605 AA; 66292 MW; EBB25F220026CA4D CRC64; MGGLIDLNVT EEQEEETTPS SGSGSLSPCD SSSSASAFGV SGSSSSSGVC LELWHACAGP LISLPKRGSL VLYFPQGHLE QAPDFSAAIY GLPPHVFCRI LDVKLHAETA TDEVYAQVSL LPESEDVERK VREGVIDVDG GEEDYEVVKR TNTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYTQ PRPSQELLAR DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGDDGK LRLGVRRASQ IEGASAFSSQ YNQNMNHNNF AEVVHAISTN SAFNIYYNPK ASWSNFIIPA PKFLKTVDYP FCIGMRFKAR VESEDASERR SPGIITGIND LDPIRWPGSK WRCLLVRWDD TDANGHHQQR ISPWEIEPSG SISSSGSFIT TGPKRSRIGF SSGKPDIPVS GSGATDFEES LRFQRVLQGQ EIFHGFINTS SDGGAGARRG RFKGTEFGDS YGFHKVLQGQ ETVPAYPMMT DQRHQGMSQR NIWCGPFQNF STRILPPSSV QVSSPLPSSG PNVRMEEHHG GSGRCRLFGF PLRDETTAVG SGMVVGPCVE GQNGSSIRGG VSAVQSSHHG RDIYGMRDML LDIAL // ID H9B4C4_BRARP Unreviewed; 552 AA. AC H9B4C4; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF3-2 {ECO:0000313|EMBL:AFD01297.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01297.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra021885.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021885.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01297.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01297.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra021885.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021885.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979463; AFD01297.1; -; mRNA. DR STRING; 3711.Bra021885.1-P; -. DR EnsemblPlants; Bra021885.1; Bra021885.1-P; Bra021885. DR Gramene; Bra021885.1; Bra021885.1-P; Bra021885. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 552 AA; 60464 MW; 2000ACF4B9D04E87 CRC64; MGGLIDLNVT EEEDETLSSA SGSLSTSNSS SSAFVANGSS SSSSSSGVCL ELWHACAGPL ISLPKRGSLV LYFPQGHLEQ QAPGFSAAIY GLPPHVFCRI LDVKLHAETD TDEVYAQVSL LPESEDIERK LREGVIDVVD GGDQEDYEVV KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SKPRPSQELL ARDLHGLEWR FRHIYRGQPR RHLLTTGWSG FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQFEGASAFS AQYNQNTNHN NFSEVAHAIS TNSAFNIYYN PKSLGIITGI SDLDPIRWPG SKWRCLIVRW DDNEANRHQQ RVSPWEIEPS GSISSSGSFM TTGPKRSRIG FPDIPVSEGI HATDFEESLR FQRVLQGQEK FPGFINTSSD GGAGARRGRF KGTEFGDSYG FHKVLQGQET VPAYSMTAHQ QHGLSQGNFS SRFLPPSLVH VSSSPSSVLI TNSNRPNGRL EEHQGGSGSR CRLFGFPLRD ESTAMVVPCV EGQKGVSGVQ SNHHSQGRGI YGMRDMLLDI AL // ID H9B4C6_BRARP Unreviewed; 867 AA. AC H9B4C6; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF5-1 {ECO:0000313|EMBL:AFD01299.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01299.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra012190.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012190.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01299.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01299.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra012190.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012190.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979465; AFD01299.1; -; mRNA. DR STRING; 3711.Bra012190.1-P; -. DR EnsemblPlants; Bra012190.1; Bra012190.1-P; Bra012190. DR Gramene; Bra012190.1; Bra012190.1-P; Bra012190. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 156 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 758 842 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 867 AA; 96098 MW; B4A99A8EA0B426CA CRC64; MMASLACVED KMKTNGLVNG GTTTTTPQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP LVTLPQVGSL VYYFPQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVFPV PEFGLLRGSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA CPAEFVIPIA KYRKAICGSQ LSVSMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWAGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGETEWGSLI KRPFIRVSDS TNGILPYASF PNMASEQLMR MMMRPHNSNS NNQNATTSFM SEMQQNVLMR QGGLLGDMNM QQPPMVQQVQ PESKLTVNPS ASNTSGQEQN LPTQSMHAPS KSEKPTLSGC SSGRVSHGTE QQTMDQANQV CNEEKVNELM QKPVALSPCP DISQQIYPPT NGFSFLETEE LSSQVSSFQS LAGSYKQPLM DSSAVVLPDT TNSSLFHDVW DNQLNGLKFD QFSPLMQQDL YGNNSTNSNI LDPPPLSNTV LDDFCAIKET DFNCLVGNNN NNSTSFTQDV QSQITSASFA DNSGGTGTSS SNVDFDDSSL LQNSKGSWQQ KLATPRVRTY TKVQKTGSVG RSIDVTSFRD YKELKSAIEC MFGLEGLLTR PQSSGWKLVY VDYESDVLLV GDDPWEEFVG CVKCIRILSP TEVQQMSEEG MKLLNSACIN DLKTSVP // ID H9B4C8_BRARP Unreviewed; 470 AA. AC H9B4C8; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF5-3 {ECO:0000313|EMBL:AFD01301.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01301.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra025775.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025775.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01301.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01301.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra025775.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025775.1-P}; RG EnsemblPlants; RL Submitted (FEB-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979467; AFD01301.1; -; mRNA. DR EnsemblPlants; Bra025775.1; Bra025775.1-P; Bra025775. DR Gramene; Bra025775.1; Bra025775.1-P; Bra025775. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 470 AA; 52561 MW; AEB4722F446CE149 CRC64; MMASVEEKMK TNGLVNGGTT TTSQSSLLEE MKLLTDQSGT RKPVINSELW HACAGPLVCL PQVGSLVYYF SQGHSEQVAV STRRSATTQV PNYPNLPSQL MCQVHNVTLH ADKDSDEIYA QMSLQPVHSE RDVFPVPDFG LLNRSKHPAE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP LDYTAQPPTQ ELVVRDLHEN TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR DEKSQLMVGV RRANRQQTAL PSSVLSADSM HIGVLAAAAH ATANRTPFLI FYNPRACPAE FVIPLAKYRK AICGAQLSAG MRFGMMFETE DSGKRSDMDP LRWSGSKWRN LQVEWDEPGC NDKPTRVSPW DIETPESLFI FPSLTSGLKR QLHPSYFGLL TRPQSSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIRIL SPTEVEQMSE EGMKLLNSAC INDLKSSVSK // ID H9B4D1_BRARP Unreviewed; 1100 AA. AC H9B4D1; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF7-2 {ECO:0000313|EMBL:AFD01304.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01304.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra020125.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020125.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01304.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01304.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra020125.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020125.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979470; AFD01304.1; -; mRNA. DR STRING; 3711.Bra020125.1-P; -. DR EnsemblPlants; Bra020125.1; Bra020125.1-P; Bra020125. DR Gramene; Bra020125.1; Bra020125.1-P; Bra020125. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 973 1066 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1100 AA; 121236 MW; 45C59E7B99DAF5F3 CRC64; MKAPSSNGVS PNPVEGDRRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV SNKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI FETEECGVRR YMGTVTGISD LDPVRWKSSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDETDMESA LKRAMPWLDN GLEMKDSSSS IFPGLSLVQW MSMQQQNGQL PSSAAAAQSG FFPSMLPPAT GMHNNLGGTD DPSKLLSFQT PPGGISSANL QFNKPNPQAS MSQLPQPPTT LSQQQQLQQL LHSSLNHQQQ QSQPQQQQTL QQQHHQPLHQ QTQQLQQQQQ QLQSHPHPQP QSQSQPQQLQ PHQLQQFQLP QNQPYNSQQA AQQHQAQQAS MHHLQPPVVS VSMASSVIVP PSSSLNQNCQ QQQQQSTQLQ HTHRHLGAST SQSNVVETSK SSSSNPMSIP PHDTQFPRQL EQQQPPVLVN GPNQQHKAQQ THQQMFQQSL LEQPHLQFQL LQRLQQQQQQ FLMPGSSSLQ SQLLHQQLQQ PPPQMLVSRP QDKQNPLVGG GGVKAYSGIT DGGDAPSSST SPSTNNCQIS SSTFLNRTQS GPPTLMPDAA VDISGSLVQD LYSKSDMRLK HELAGPQKSK ASLTDHHHQL EASASGTSFL APTFGLDSDS RNSLLGGGAN VDNGFVPDTL LSRGYDSQKD LQNMLSNYGG VTNDIGTEMS TSAIRTQSFG IPNVPAISND VAVNDAGGVL GGGLWPTQTQ RMRTYTKVQK RGSVGRSIDV NRYRGYDELR HDLARMFGIE GQLEDPQTSD WKLVYVDHEN DILLVGDDPW EEFVNCVQSI KILSSAEVQQ MSLDGNFAGV PVTNQACSGG DSGNAWRGHY DDNSATSFNR // ID H9B4D2_BRARP Unreviewed; 780 AA. AC H9B4D2; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF8-1 {ECO:0000313|EMBL:AFD01305.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01305.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra004125.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004125.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01305.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01305.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra004125.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004125.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979471; AFD01305.1; -; mRNA. DR STRING; 3711.Bra004125.1-P; -. DR EnsemblPlants; Bra004125.1; Bra004125.1-P; Bra004125. DR Gramene; Bra004125.1; Bra004125.1-P; Bra004125. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 676 760 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 780 AA; 87325 MW; 136CD2F5FC7C61D8 CRC64; MNLSSSGFGH QSHEGEKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ PLTQEEQKDT FVPIELGVPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT TFPMYPSLFP LRLKRPWHPG ASSFQDSRGD LTWLRGGAGE NGLLPLNYPS PNVFPWMQQR LDLSLLGTDQ NQQYQAMLAA GLQNFGGGGG DPLRQQFVHL QEPNHQYLQQ QSAPIIHSSD LQQHHQQQQM PRHLLQAQPQ ILTENLPQQN MRQEVSNQAQ QPDRVWQHSD LLSPSDFTNK FTSAATNPQV QQQNLTLQGS GDSSSHLLNF SITGQSEQLP THDWSLKHSH HPETNYFSEP LSLGQGYGRA SPSLEPPPST QNLSLFGVDS DSGLFLPTTV PRFGDTSSMP LADSGFQNTL QETTEVAAHG GVEHTNNFVK VYKSGSVGRS LDISRFSSYN ELREELGRMF DIKGLLEDAF RSGWQLVFVD KEDDILLLGD DPWESFVNSV WYIKILSPDD VHKMGEHGEG SSFPQNLTHF // ID H9B4D3_BRARP Unreviewed; 844 AA. AC H9B4D3; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF8-2 {ECO:0000313|EMBL:AFD01306.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01306.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra028110.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra028110.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01306.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01306.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra028110.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra028110.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979472; AFD01306.1; -; mRNA. DR STRING; 3711.Bra028110.1-P; -. DR EnsemblPlants; Bra028110.1; Bra028110.1-P; Bra028110. DR Gramene; Bra028110.1; Bra028110.1-P; Bra028110. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 738 822 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 844 AA; 93115 MW; B9EC398FF96DA9DF CRC64; MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLHGIHPPF VSSPKLLVAI NLKSLLVFTD GRGELGSGLP WLRGGGGGEQ QGLLPLNYPS VGLFPWMQQR LDLAQLGTDN NQQYQAMLAA GLQNMGGGDP LRQQFVQLQE PPPHHQYLQQ SASHNSDLML QQQQQQQHLM HAQTQIMSEN LPQRQEVSKQ QPGGGGGQQS VDQNAYLNAL KMQNGQLQQW QQHSDMPSPS FMKADFTDKF PTTATPMQQN SASPGSGHGS NLLNFSITGQ SVLPEQLMGE GWSPKASNTF SEPLSLPPQA YAGKSLALEP ASANVNPSVF GVDPGSGLFL PSTVPRFASS SSGGDAEAYP MSLGDSGFEN SLYNSCMQDT THELLHGVGQ ISPSNQTKNF VKVYKSGSVG RSLDISRFSS YHELREELGK MFAIEGLLED PLRSGWQLVF VDKENDILLL GDDPWESFVS NVWYIKILSP EDVQEMGDHG EGSGGSLPQN PTQL // ID H9B4D6_BRARP Unreviewed; 705 AA. AC H9B4D6; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF10 {ECO:0000313|EMBL:AFD01309.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01309.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra011955.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011955.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01309.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01309.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra011955.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011955.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979475; AFD01309.1; -; mRNA. DR STRING; 3711.Bra011955.1-P; -. DR EnsemblPlants; Bra011955.1; Bra011955.1-P; Bra011955. DR Gramene; Bra011955.1; Bra011955.1-P; Bra011955. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0048589; P:developmental growth; IEA:EnsemblPlants. DR GO; GO:0010154; P:fruit development; IEA:EnsemblPlants. DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0048441; P:petal development; IEA:EnsemblPlants. DR GO; GO:0031540; P:regulation of anthocyanin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009743; P:response to carbohydrate; IEA:EnsemblPlants. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0048442; P:sepal development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 592 671 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 705 AA; 77898 MW; 303F34A2A94DC964 CRC64; MEQERSLDPQ LWHACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADSET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR SETGDLCVGI RRAKRGGLGS NGDNNSNSNN PYPGFSGFLR DDEITTSKLM MMKRNATGGG GNANDANAPG GRVRVEAVAE AVARAACGQA FEVVYYPRAS TPEFCVKASD VRSAMRIRWC SGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP RKKLRIPQPF DFPFDGTKFP MFSPGFAAGN NGGGESMCYL STNDNNNNAP AGIQGARQAQ QLFGSPSPSL LSDLNLNTFH SGNKLQQSSS SPAMFLSGFN PRHHYDNIVV PRQTRDAEFN NNISCSLTIG NPGLVQDKKK SGSVKTHQFL LFGQPILTEQ QVMNRKRALE EEAEKEEKGG LTWNYGLQGI ETGHCKVFME SEDVGRTLDL SVIGSYQELY RKLAEMFGIE ERSDLLTHVV YRDANGVTKR IGDEPFSDFM RATKRLTIKM DISGDNVRKT WITGIRNGEN GIDSSTKTGQ LSIFA // ID H9B4D7_BRARP Unreviewed; 584 AA. AC H9B4D7; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF11 {ECO:0000313|EMBL:AFD01310.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01310.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra004530.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004530.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01310.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01310.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra004530.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004530.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979476; AFD01310.1; -; mRNA. DR STRING; 3711.Bra004530.1-P; -. DR EnsemblPlants; Bra004530.1; Bra004530.1-P; Bra004530. DR Gramene; Bra004530.1; Bra004530.1-P; Bra004530. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0009506; C:plasmodesma; IEA:EnsemblPlants. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 473 565 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 584 AA; 65890 MW; 92BB8EA61FF86536 CRC64; MENVVDDQLY MELWKACAGP LVEVPRYDER VFYFPQGHME QLVASTNQRV VDKDIPVFNL PPKILCRVLN VMLKAEHETD EVYAQITLQP EEDQSEPTSL DPPLTEPAKQ TVDSFVKILT ASDTSTHGGF SVLRKHATEC LPPLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGHQTGDL RVGVRRLAKQ QSTMPASVIS SQSMHLGVLA TASHAFNTTT MFVVLYKPRI SQFIISVNKY MAAMKKGFGI GMRFRMRFEG EESPERIFTG TIVGTGDLSP QWPASKWRSL QVQWDESSTV QRPNKVSPWE IEPFLPSTLT TSPTQPYSKS KRSRPIDPSV SEITGSPVAS NFLSRFPKSH EPSPSLKLLF QDPSSERNSN KTEAPATSCC RLFGFDLKSK PASAPNPNDK QQLISVDSNN TGSAKCQDPN SSKDQKQQTS STRSRTKVQM QGTAVGRAVD LTLLRSYDEL IRELEKMFEI EGELRTKDKW AIVFTDDEGD MMLVGDDPWD EFCKMAKKLF IYSSDEVKKM SSKSLLDDEC TMVHLEPDQR TVKL // ID H9B4D8_BRARP Unreviewed; 647 AA. AC H9B4D8; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF16-1 {ECO:0000313|EMBL:AFD01311.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01311.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra011162.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011162.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01311.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01311.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra011162.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011162.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979477; AFD01311.1; -; mRNA. DR STRING; 3711.Bra011162.1-P; -. DR EnsemblPlants; Bra011162.1; Bra011162.1-P; Bra011162. DR Gramene; Bra011162.1; Bra011162.1-P; Bra011162. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 561 641 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 647 AA; 71523 MW; 15F11DAC6505BE53 CRC64; MINVMNPMRS GSEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLKLIP LKDNDHEYRD GEESNGLGSN NSEKTPSFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYN AEPPVQTILA KDVHGEVWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD SIVFMRAENG DLCVGIRRAK RGGIGNNGLE YSAGWNPIGG SYSSLLRDDE RRSSSSLADR KGKVTAESVV EAAKLAVSGR GFEVVYYPRA SSSEFCVKAL DARAAMRIPW CSGMRFKMAF ETEDSSRISW FMGTVSAVSV SDPVRWPNSP WRLLQVAWDE PDLLQYVKRV NPWLVELVSN VHPIIPSFSP PRKKMRLPQH PDYNTRISVP SFASNPLIRS SPLSSVLDNV PVGLQGARHN AHQYYGLSSS DLHHYYLNRP HPPPPSSTLS VPPPLGFRNI DSKNEKGFCF LTMGTSPCND TESKKSHIVL FGKLILPEEQ KGSEKTQLSS GGSNQNCVAG SSSEEGSPCS NKAHDGLGLE TGHCKVFMES DDVGRTLDLS VLGSYEELGM KLSDMFGIQK SEMLSSVLYR DASGAVKYPG NEPFSEFLKT ARRLTILSEQ GSESVVV // ID H9B4E1_BRARP Unreviewed; 546 AA. AC H9B4E1; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF17-2 {ECO:0000313|EMBL:AFD01314.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01314.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra015651.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra015651.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01314.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01314.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra015651.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra015651.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979480; AFD01314.1; -; mRNA. DR STRING; 3711.Bra015651.1-P; -. DR EnsemblPlants; Bra015651.1; Bra015651.1-P; Bra015651. DR Gramene; Bra015651.1; Bra015651.1-P; Bra015651. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 546 AA; 59885 MW; 717A852808AB5CE5 CRC64; MSPPSAIADV HRVIDPKIWR ACAGASVKIP ALFSRVYYYP QGHVEHCCPS SSAVTASPIA CVVSSIDLLA DPITDEVFAH LTLHPAAAQD QFQFPPQSRF EEEDESEKVV TFAKVLTASD ANNGGGFSVP RYCADSVFPP LDFQADPPVQ KLFITDVHGG VWDFRHIYRG TPRRHLLTTG WSKFVNSKKL ICGDSVVFMR KSVHEMFIGV RRAPISNKSG GSSYYGDEYF PGGYYGVKKE DGGEKFRRVG MGKLTAEAVS EAIGKASRGL PFEVVYYPTA GWSEFVVRAE DVEASTNVYW TPGTRVKMAM ETEDSSRITW FQGIVSATFQ ETWKQLQITW DEPEILQNLK RVNPWQVEAV TASSTQLHAT YPPPPKRSKY PHASSGVLSG EEGEMIYYGR GQQTMDPIPY GYTYTTVPAG MQGARHYEFG SYNNSTGFIG ENAHPEFNFF SPLPGLGRVS TQMMSFGSPP SDELSPNSNT TNVSSGNDAA GNNRGISFQL FGKVINVQEP AESGVAESSL CEEDGSKESS DNEVPNEAQL LGRGGR // ID H9B4E3_BRARP Unreviewed; 555 AA. AC H9B4E3; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF18-2 {ECO:0000313|EMBL:AFD01316.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01316.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra014419.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014419.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01316.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01316.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra014419.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014419.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979482; AFD01316.1; -; mRNA. DR STRING; 3711.Bra014419.1-P; -. DR EnsemblPlants; Bra014419.1; Bra014419.1-P; Bra014419. DR Gramene; Bra014419.1; Bra014419.1-P; Bra014419. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 451 543 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 62438 MW; E69B78CC254F7F69 CRC64; MANVDGDDLR TSLSRSYNDE LYTELWKACA GPLVEVPLAG EKVFYFPQGH MEQLVASTNQ GIESEEIPDF KLPPKILCRV LSVMLKAEHD TDEVYAQITL KPEEDQSELT SLDPPLVEPT KQMFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMGQ ATPTQELVTR DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV SSKRLVAGDA FVFLRGENGD LRVGVRRLAR HQSTMPTSVI SSQSMHLGVL ATASHAVVTK TIFLVFYKPR ISQFIVGVNK YMEAMKHGFS LGTRFRMRFE GEESPERMFT GTIVGIGDLS SQWPASTWRS LQVQWDEPTT FQRPDRVSPW EIEPFLSSPP VSTPAQQSQP KCKRSRPVES SVLTPAPPSF LYGFPQSQET PSPPPPSASS CYRLFGFDLT SNPPAPIPPD KCQEPITPSA ANEPKKQQKQ RTRTKVIMQG VAVGRAVDLT LLKSYNELIK ELEEMFEIKG QLLTREKWVV VFTDDEGDMM LAGDDPWNEF CKMAKKIFIY SSDEVKKMTT MLKSSSSLEN DESMD // ID H9B4E5_BRARP Unreviewed; 1049 AA. AC H9B4E5; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF19-2 {ECO:0000313|EMBL:AFD01318.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01318.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra025720.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025720.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01318.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01318.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra025720.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025720.1-P}; RG EnsemblPlants; RL Submitted (FEB-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979484; AFD01318.1; -; mRNA. DR STRING; 3711.Bra025720.1-P; -. DR PRIDE; H9B4E5; -. DR EnsemblPlants; Bra025720.1; Bra025720.1-P; Bra025720. DR Gramene; Bra025720.1; Bra025720.1-P; Bra025720. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 921 1014 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1049 AA; 116148 MW; A38D96523B268CD0 CRC64; MKAPSNGFHP NPAEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKINR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA GAAATTQLPS SYNLPNNFAP NDHSKLLNFQ SPNLSPANTQ FNKPNMVSHI SQQMQAQPAM VQSQQQLQQQ VQMSHQQLQQ QHHQHQQQGG YNSGSVNNGV SVVSNQVSCQ NQSAGFTQSQ LQQQSILSNG AKMTHQNIVS AGNKGSSQMT AQELQFQQQL ELHNSTQLLR NQQEQSSMHS LQQNPQQLQM QQQQSSKPSP SQQLQMQLLQ KLQQQQQSTP PPGSSSLQPQ LSSLQQTQSH QLQQLLSSQN QQPLPQSNNN GFMQPPQIQA SHHQQQGYMN NNKPIVRSQS GHIDGEAPSC STSPSANNTG HDNVSPTNFL SRNQQQGQAV SVPASNPVQQ GMVNLKSAGE QYKFKGAVTD QIDVTTAGTT YCPDVVVGPG QQQQQTFPLP SFGFDGDLQQ SQHPRNNLAF AGNLEAVNPD ALYSQKDFQN LVVPNYGNAP RDIETELSSA SQSFGIPSIP FKSGGSNEIG GINDSGIMNG GIWPNQAQRM RTYTKVQKRG SVGRSIDVTR YSGYEELRND LARMFGIEGQ LEDPQISDWK LVYTDHENDI LLVGDDPWEE FVNCVQNIKI LSSAEVQQMS LDGDLAAIPT TNQACSETDS GNAWKVHYED TSAAASFNR // ID H9B4E7_BRARP Unreviewed; 549 AA. AC H9B4E7; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF25 {ECO:0000313|EMBL:AFD01320.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01320.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra027944.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra027944.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01320.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01320.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra027944.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra027944.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979486; AFD01320.1; -; mRNA. DR EnsemblPlants; Bra027944.1; Bra027944.1-P; Bra027944. DR Gramene; Bra027944.1; Bra027944.1-P; Bra027944. DR OrthoDB; EOG093614FP; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 518 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 549 AA; 62381 MW; 3757738D33DDDD01 CRC64; MAGDQIMHAQ PEVLAIGETN NYLNDKLWKL CAGPLFDTPK IGEKLVASMD DELCQLKPIF DIPSKICCNV FSINLKVEPS TNEIYAEVSL LPDTSDVEIP IPKNENNIQN INYFTKVLSA SDTSTNGGFV LYKRHAIECL PLLDMSQLTP SQEIIAKDIH GHEWSFKHTS RGTPKRHLFT SGWNEFAKGK KLVAGDSFVF LRGENGESRV GISKAAHQQR NIPTSLISKE SMHHSVVATA LNAIENKCMF VVFYKPRSSQ FIVNFDKFVD RVNNKFSIGS KFSMKFEGKD LNEIRYNGTV VGVRDFSTHW KDSEWRSLEV QWDEAATIPR PDKVSPWEIE LLTHSSNIFK SDALKHKRQL EVHEFGSKMW APTIYNEQMV QAMKEPSTTT ATTSCRLFGV DLMVPAITKD PVEPIVSNKK CKISKIFEDE KVDHVQAKSR TKVHMEGVIE RTVDLTIFDG YNQLIDELER LFDIKGELHM HNKWKMFFIY NDGDMMILGD DPWPKFCNMA KEIFICSKED VKIGIANNRF SEGDPTLTTT ILPPDVNNT // ID H9B4E8_BRARP Unreviewed; 555 AA. AC H9B4E8; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF26 {ECO:0000313|EMBL:AFD01321.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01321.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra018124.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018124.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01321.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01321.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra018124.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018124.1-P}; RG EnsemblPlants; RL Submitted (FEB-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979487; AFD01321.1; -; mRNA. DR EnsemblPlants; Bra018124.1; Bra018124.1-P; Bra018124. DR Gramene; Bra018124.1; Bra018124.1-P; Bra018124. DR OrthoDB; EOG093614FP; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 444 524 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 62832 MW; 461C53374E403D3A CRC64; MASDQIMHVQ PEFLATGGTN NYLYDQLWKL CAGPLFDPPK IGEELVTSIN DELCQLKPVF NIPSKIRCNV FSIKLKVETT TDEIYAEISL LPDTSEVEIP TSKCENNIQN IKCFTKVLSA SDTSKKGGFV LNKRHAIECL PPLDMSHLTP SQEINATDIH GHEWKFKHAL KGTPKRHLFT SGWNEFAKAK KLVVGDSFIF LRGENGESRV GIKKAAHHQQ ENIPSSIISK ESMHHGVVAT ALNAIKNKCM FVVFYKPRSS QFVVNIDKFR DGVNKKFSIG SRFLMKFEGK DFNEISERFL PHWKDSEWRC LEVQWDEAAT IPRPDKVSPW EIEPLTHSSD ILKSGSNMWV PTLTQGQEVG HSSIQSSMSY SFATTMSKPN YNEQMVQAMK ETSTTTATTS YRLFGVDLKV PAKTKDSIEP INSYKKSKIS KIFEEEKVDH IQTRSHTKVR MEGAMERTVD LSIFDGYNQL IDELERLFDI KGKLHIHNQW KIVFINADGD IMLLGDDPWP KFCNTAEEIF ICSKNDAKVG DADNKFSEGD PILTTTNLPP DVNNN // ID H9B4E9_BRARP Unreviewed; 541 AA. AC H9B4E9; DT 16-MAY-2012, integrated into UniProtKB/TrEMBL. DT 16-MAY-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF27 {ECO:0000313|EMBL:AFD01322.1}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EMBL:AFD01322.1}; RN [1] {ECO:0000313|EnsemblPlants:Bra034234.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034234.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EMBL:AFD01322.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Mixed tissue of mature leaf {ECO:0000313|EMBL:AFD01322.1}; RA Yu H.J., Mun J.H., Chung H.; RT "Auxin response factor gene family in Brassica rapa."; RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Bra034234.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034234.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; JN979488; AFD01322.1; -; mRNA. DR PRIDE; H9B4E9; -. DR EnsemblPlants; Bra034234.1; Bra034234.1-P; Bra034234. DR Gramene; Bra034234.1; Bra034234.1-P; Bra034234. DR OrthoDB; EOG093614FP; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 462 541 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 541 AA; 61874 MW; 98906BC6C3886F42 CRC64; MANNQTMNAQ PKFRGTEGVN RYLYDQLWKL CAGPLFDLPK IGEEVYYFPQ GNIEQLVASA NDNLCQLKPI FDISSRIHCN VISIKLKVET NTDEVYAKVS LLPCSPEVEI TFPNDNNEQN IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIVAKDLH DHVWKFKHTF RGTPKRHLFT SGWKEFVKGK SLAVGDSFVF LRGENGESRV GIRKTSHQQS DMSSSVISKE SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNMKFNTSS RFTMKFEGHD FNEIIYSGTI VKMEDFSIYW KGSEWRNLQV QWDEAATIPR PNKVSLWEIE PLIPSSNILK SVIQNNKRQR EINEFGPIIS KPDYNDQMVQ STKENSTTNA SSSFRLFGVD LTASSKARDV LEPLESYQKN KTSEIFEEEN LDQTQAVTSL TEIQRKELSF TTSSTKVHME GVTRTVDLTV FDGYNHMIVE LEKLFNIEGK LHMHSQWKLT FKDHEGDMML VGDDPWPKFC NIVKEIVISS K // ID I0Z5I1_COCSC Unreviewed; 332 AA. AC I0Z5I1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIE25900.1}; GN ORFNames=COCSUDRAFT_64891 {ECO:0000313|EMBL:EIE25900.1}; OS Coccomyxa subellipsoidea (strain C-169) (Green microalga). OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; OC Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa. OX NCBI_TaxID=574566 {ECO:0000313|EMBL:EIE25900.1, ECO:0000313|Proteomes:UP000007264}; RN [1] {ECO:0000313|EMBL:EIE25900.1, ECO:0000313|Proteomes:UP000007264} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=C-169 {ECO:0000313|EMBL:EIE25900.1, RC ECO:0000313|Proteomes:UP000007264}; RX PubMed=22630137; DOI=10.1186/gb-2012-13-5-r39; RA Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D., RA Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., RA Proschold T., Salamov A., Schmutz J., Weeks D., Yamada T., RA Claverie J.M., Grigoriev I., Van Etten J., Lomsadze A., Borodovsky M.; RT "The genome of the polar eukaryotic microalga coccomyxa subellipsoidea RT reveals traits of cold adaptation."; RL Genome Biol. 13:R39-R39(2012). CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EIE25900.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AGSI01000003; EIE25900.1; -; Genomic_DNA. DR RefSeq; XP_005650444.1; XM_005650387.1. DR GeneID; 17043904; -. DR KEGG; csl:COCSUDRAFT_64891; -. DR Proteomes; UP000007264; Unassembled WGS sequence. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007264}; KW Reference proteome {ECO:0000313|Proteomes:UP000007264}. FT DOMAIN 54 154 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 332 AA; 35572 MW; DF4F6AE018915325 CRC64; MASVDNSSQP SAAPAATDAS APSSGAPENA TTSAGTPTHG THASLEAYSA TFLFDKQLTT SDAGGHGRVV IPKVHARAHL PSLEDKNGVH VEVIDTYGTR HRFRYCSWIN NSSRMYLLEG VAPALNALKL KAGDILIFAK LPNGELLLGG RTRTSADKDR KAPPRARKGS EQGANGTPAA GAKRPRLNGG ATGGPQQRQK SNASPLMYRP LCDGVFRAVP PTISAREYCG KVLQQGGTWT AILDVSGEAY QAFFDSQGAA MEALNAAGVL PREVLQVVVG RQGAVEAMEG RVDLAETVRE RLLTEIRRAR QRRRGSRWHA EECRSRVLER AR // ID I1GQ91_BRADI Unreviewed; 668 AA. AC I1GQ91; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G14500.1}; GN Name=LOC100835276 {ECO:0000313|EnsemblPlants:BRADI1G14500.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G14500.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G14500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14500.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G14500.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14500.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI1G14500.1; BRADI1G14500.1; BRADI1G14500. DR Gramene; BRADI1G14500.1; BRADI1G14500.1; BRADI1G14500. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR InParanoid; I1GQ91; -. DR OMA; FQHEMIV; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 194 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 262 355 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 566 663 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 194 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 262 355 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 566 663 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 668 AA; 76640 MW; 005438B9AA8B8F20 CRC64; MDATPLLHAC SARPAVNKSG IGFIEARAQT RQGIPCRAVR SQRGGAALLS MRLRETRKRR RDVAGELGMK SGRLVGKNMG APCERCKWHD EQDYRDLDDR EKHFLMFLMG DFQHEMIVPE EFVQRLKGEI RGEIKLETRN GYSYTVGVSK NQEKVVFMAG WGQFVENFDL QMGESIIFRY NGSSQFSVVM FDKLGREKAL SVIADALPPR IQERHTDATE TVHNKGKNMG APCGRCKWRD ELDYRGLDDR EKHFLMFMMG DFQHEMTSKR QRYTMIIIVP QEFVQRLKGE IRGEIKLETR NGYSYTIGVS KDQEELVFMA GWGKFVENFD LQMGESIIFR YNGSSQFSVT IFDKLGREKA LSVIEDALPP HVLERHTDAT ENVSRSHGYP QAMQMQLPND AMNRFCVHCQ PMQMQPHAET MDRSHGRHKT KKMQSLTETV TQSQVHPQPM QMQPSSKTVN RSPMQMPPMK RQRRLQRNKS NQGNKTALKS SSSESSGTGD SFSSEEGHAA VPCYNYAVEK KDKMHRVQKE QLKDGYIATR VTKLTPIQAE QVKKEVQCLH SDIPIFVAVM SRVNVVSGFR LTVPNWYGQK YLGDEQSVWL QRLGENWPVN LRGRSPGLLI DRRFENGWQK FVEENDIKIG DICLFERLNN QRCTLKVHII SAKDGSCC // ID I1GQ92_BRADI Unreviewed; 658 AA. AC I1GQ92; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK14140.1, ECO:0000313|EnsemblPlants:BRADI1G14510.1}; GN Name=LOC100826730 {ECO:0000313|EnsemblPlants:BRADI1G14510.1}; GN ORFNames=BRADI_1g14510 {ECO:0000313|EMBL:KQK14140.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G14510.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK14140.1, ECO:0000313|EnsemblPlants:BRADI1G14510.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK14140.1, RC ECO:0000313|EnsemblPlants:BRADI1G14510.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G14510.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14510.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK14140.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK14140.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK14140.1; -; Genomic_DNA. DR EMBL; CM000880; KQK14141.1; -; Genomic_DNA. DR RefSeq; XP_014752321.1; XM_014896835.1. DR RefSeq; XP_014752322.1; XM_014896836.1. DR RefSeq; XP_014752323.1; XM_014896837.1. DR RefSeq; XP_014752324.1; XM_014896838.1. DR RefSeq; XP_014752325.1; XM_014896839.1. DR RefSeq; XP_014752326.1; XM_014896840.1. DR EnsemblPlants; BRADI1G14510.1; BRADI1G14510.1; BRADI1G14510. DR GeneID; 100835892; -. DR Gramene; BRADI1G14510.1; BRADI1G14510.1; BRADI1G14510. DR KEGG; bdi:100835892; -. DR eggNOG; ENOG410JSRG; Eukaryota. DR eggNOG; ENOG41108JJ; LUCA. DR InParanoid; I1GQ92; -. DR OMA; SIHEDNP; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000008810; Chromosome 1. DR ExpressionAtlas; I1GQ92; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 349 444 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 560 655 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 349 444 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 560 655 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 658 AA; 75403 MW; 8E89A0A8E1F94E4F CRC64; MCCERCKRRD ERDYCSLDDR EKYFLIFMED GCAHEMIVPN EFVRRFSGEI PGEIELETRN GQTYTVGVSK YPDKLVLTAG WGAFVKTYDL QIGDSVVFRY DGDSQFNVIV FDRFGREKAS SVVAVADNDP LSPHEQEKNR VSTESLNRSH SYPQRMEVQS PTENVNRSQG HPQAMQMPSP TENVNLSQEH PQPMQMPPPT ENMDRSQRHP QPMHMQSPTG NVDGFVGLSR HMEVQSPTEN VNSFVGHSEP TQMQPPTDTM NHCSYHPQTV QMQLSCSHTE RQSKLQNDYS NQGNKTATSP SGDSLPPEDD IEVCEEPRYM LGRKNRLSSA QVKEVDEMVQ HIHHENPIFV AVMSKCNVTG SFHLSVSKQY VKRYMGNKVR CICLQRCGKK WEVHFGGRPG EKRIVAGWRK FVKDNDLEIG DICIFELLKN YMMCTIEVHI IHIKDLDSSS QNGCNKVKRS SKIVACSHSR PELVPTQTMK HSMVRPQSTQ TQSPPIKRKM PLQRVKTLGR ERDSLFSEDS NGDVDTLTDY IAVHKKRLTP IQKREVKKMV QSIDSEIPIF VVVMHKTNVT RRFTLSISKK YAEKYLGGEV QRIWLERLGE RCQVNLGRRP QDTRVVGGWA KFVRDHEVEV GDICLFELLK NRVSCTMKVH IIRAKNVS // ID I1GQ93_BRADI Unreviewed; 649 AA. AC I1GQ93; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G14510.2}; GN Name=LOC100826730 {ECO:0000313|EnsemblPlants:BRADI1G14510.2}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G14510.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G14510.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14510.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G14510.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14510.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_014752327.1; XM_014896841.1. DR EnsemblPlants; BRADI1G14510.2; BRADI1G14510.2; BRADI1G14510. DR GeneID; 100835892; -. DR Gramene; BRADI1G14510.2; BRADI1G14510.2; BRADI1G14510. DR eggNOG; ENOG410JSRG; Eukaryota. DR eggNOG; ENOG41108JJ; LUCA. DR Proteomes; UP000008810; Chromosome 1. DR ExpressionAtlas; I1GQ93; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 340 435 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 646 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 340 435 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 551 646 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 649 AA; 74559 MW; 0EB53DFCAA35BC5F CRC64; MCCERCKRRD ERDYCSLDDR EKYFLIFMED GCAHEMIVPN EFVRRFSGEI PGEIELETRN GQTYTVGVSK YPDKLVLTAG WGAFVKTYDL QIGDSVVFRY DGDSQFNVIV FDRFGREKAS SVVAVADNDP LSPHEQEKNR VSTESLNRSH SYPQRMEVQS PTENVNRSQG HPQAMQMPSP TENVNLSQEH PQPMQMPPPT ENMDRSQRHP QPMHMQSPTG NVDGFVGLSR HMEVQSPTEN VNSFVGHSEP TQMQPPTDTM NHCSYHPQTV QMQLSCSHTE RQSKLQNDYS NQGDSLPPED DIEVCEEPRY MLGRKNRLSS AQVKEVDEMV QHIHHENPIF VAVMSKCNVT GSFHLSVSKQ YVKRYMGNKV RCICLQRCGK KWEVHFGGRP GEKRIVAGWR KFVKDNDLEI GDICIFELLK NYMMCTIEVH IIHIKDLDSS SQNGCNKVKR SSKIVACSHS RPELVPTQTM KHSMVRPQST QTQSPPIKRK MPLQRVKTLG RERDSLFSED SNGDVDTLTD YIAVHKKRLT PIQKREVKKM VQSIDSEIPI FVVVMHKTNV TRRFTLSISK KYAEKYLGGE VQRIWLERLG ERCQVNLGRR PQDTRVVGGW AKFVRDHEVE VGDICLFELL KNRVSCTMKV HIIRAKNVS // ID I1GQ95_BRADI Unreviewed; 568 AA. AC I1GQ95; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G14530.1}; GN Name=LOC100836815 {ECO:0000313|EnsemblPlants:BRADI1G14530.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G14530.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G14530.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14530.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G14530.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14530.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI1G14530.1; BRADI1G14530.1; BRADI1G14530. DR Gramene; BRADI1G14530.1; BRADI1G14530.1; BRADI1G14530. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR InParanoid; I1GQ95; -. DR OMA; FTGRKFR; -. DR OrthoDB; EOG0936089E; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 253 350 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 467 565 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 253 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 467 565 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 568 AA; 64607 MW; 03FDFF1641C63979 CRC64; MARLESQVQK SCDCCKTYVG HLEGKMKCFQ RHMTADFRHG MIIPNKFMDH FGGKISRTIE LESPDGNTYV VEVSKNLSKK SPCHGWEAFL DAHHIEENDS LLFRHIKNSR FEVLVLDSDD CEKVFSCVGI KVTCNVQERS SDYDDISNSS YADTTKSSGS KEFASCERVH SSHPRKTAKT PAKYSSSEDS DAGEDTEDIC SEYESSFQLD DLQTPLGCDY VLCHRSAQPG VHEEKVTRLL QDKDIRAEAP LLVAIIRQSN LKSRSSGLVI PKGYAAEHLP HKSQTVILQR PGKNKKWYHR FHIRKDGCAF LRLLGFLRDN QVQEGDICVF EPMKGTGKKF SLKVHLLRES IHGGSGTGPK RVSSPHGKSR VSSATHIRIS TTHGRTRANA TPKTRVKEEL DHGRSHPYSG SNHGHRAHKQ PLESDEYEEP VERPYMLSDI ACLTWEQEKK VKRRVDAIQS EVPIYVSIMN NSSVGANRLY HLTIPKKYAA KYLPAGGHTL RLLRPERSKT WDVEMHPRVG GAKMLRGGWH EFANENRLQV QDLCLFQLMK NERRLTMMVY IIRHNDKR // ID I1GQ97_BRADI Unreviewed; 529 AA. AC I1GQ97; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK14145.1, ECO:0000313|EnsemblPlants:BRADI1G14550.1}; GN Name=LOC100827346 {ECO:0000313|EnsemblPlants:BRADI1G14550.1}; GN ORFNames=BRADI_1g14550 {ECO:0000313|EMBL:KQK14145.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G14550.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK14145.1, ECO:0000313|EnsemblPlants:BRADI1G14550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK14145.1, RC ECO:0000313|EnsemblPlants:BRADI1G14550.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G14550.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14550.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK14145.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK14145.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK14145.1; -; Genomic_DNA. DR RefSeq; XP_010232568.1; XM_010234266.2. DR RefSeq; XP_010232570.1; XM_010234268.2. DR EnsemblPlants; BRADI1G14550.1; BRADI1G14550.1; BRADI1G14550. DR GeneID; 100827346; -. DR Gramene; BRADI1G14550.1; BRADI1G14550.1; BRADI1G14550. DR KEGG; bdi:100827346; -. DR eggNOG; ENOG410JSPY; Eukaryota. DR eggNOG; ENOG41108KZ; LUCA. DR InParanoid; I1GQ97; -. DR OMA; TIDHPSS; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 529 AA; 59147 MW; 053D5D145DD901D6 CRC64; MSKSCECCKR YWTHLHGKVK CFVGKMNRNS RHVMVIPESF VNYSPRKISG AIKLEAPNGS VYDVGITEHQ NKTLLRSGWE AFVDANHIVE NDLLMFQYRG NSRFKVIVFD SSGCEKVVSC AHIESNISDQ EPSTNSTDMS SSSSDHNIQS SACGRSDGGQ SGSSGHCRKR ARKDAISSPS KDLSGEESPC EHESSESDDD TLSKSYVLSG QCYLTKEQDA EIVALVQEIQ PERPPLVAMM KPNMKPYPDL VIPKDYALAH FPHKNQTITL QIPGQTKKWH CQFRVRSDGG RCNLFGCDFA GDNHLLEGDL CLFQPTTRAN GRTFKVAVHL LRKASNDHTS RNLVIGSNRG LANSKLASTM RVKEEPDVGE ATLYSEHGFS ENSLEHDGSE SSELPYMMPM GPRLTKSQEK KVLEKLGTIR SELPIYVAVM KKTNLTGQSF ASSLTFGKQY SATYLRKGSR NLVLQRKGKS QTWHAEMRDR DGGGLRIFGG WTSFACDNRL REGDLCLFQL MKHKEQLTMI VDIILREHC // ID I1GQ98_BRADI Unreviewed; 542 AA. AC I1GQ98; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G14560.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G14560.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G14560.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14560.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G14560.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G14560.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI1G14560.1; BRADI1G14560.1; BRADI1G14560. DR Gramene; BRADI1G14560.1; BRADI1G14560.1; BRADI1G14560. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR InParanoid; I1GQ98; -. DR OMA; MAGGNTH; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 397 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 442 540 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 397 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 442 540 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 542 AA; 61019 MW; 335D0214A48D79D5 CRC64; MACTSMSSGS CGLAPLLGLY GKNKRLSTAG QRWREMSNTC ECCKKCGKAK RFVRRMDKNS RHSMVIPERF VNHFTRRMPG NIKLEAPDGN VYDVGVTKHR NRTIFQSGWE TFLDANNIVH NNSLMFRYLG GSYFKVALFD SSGCEKVVPC PRIKSIGQEP ITSSVGMSSS SSYHNTQLSV SRSDGCHSGR RGNGAKRAKT YAASSPSEDL SASRRPVGCE SGSSSHSRNT TNKTVISSPS EESGEDNPSG CNFFDSDDVC TPPGHDYVLS RWSYLAEAQK EKVVMLIRKV QPRSRVFVAI MRKSNVQPLY PCLIICKEYA TVYFPRESAS VTLQRPGKSK KWHPRFYKRK DGSMHKIRGQ WSDFVCDNRV EEGDICIFVP AKGGRRSTFT VHLLRVENDM HAGPSDEQEK PYILSQTSSL SPLQQSLVED KTQAIQSEAP LYVAIMNNTS VGVNQRYTME FGAQFAAVYL PKGGQTMLLQ HTGKIWHTKM RVRHGTRWVL GEGWRKFVID NRLQVGDICL FELKKNRRKL TMVVHIIFSH QC // ID I1GR46_BRADI Unreviewed; 945 AA. AC I1GR46; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK14627.1, ECO:0000313|EnsemblPlants:BRADI1G17680.1}; GN Name=LOC100828664 {ECO:0000313|EnsemblPlants:BRADI1G17680.1}; GN ORFNames=BRADI_1g17680 {ECO:0000313|EMBL:KQK14627.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G17680.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK14627.1, ECO:0000313|EnsemblPlants:BRADI1G17680.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK14627.1, RC ECO:0000313|EnsemblPlants:BRADI1G17680.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G17680.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G17680.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK14627.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK14627.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK14627.1; -; Genomic_DNA. DR RefSeq; XP_003562447.2; XM_003562399.3. DR STRING; 15368.BRADI1G17680.1; -. DR EnsemblPlants; BRADI1G17680.1; BRADI1G17680.1; BRADI1G17680. DR GeneID; 100828664; -. DR Gramene; BRADI1G17680.1; BRADI1G17680.1; BRADI1G17680. DR KEGG; bdi:100828664; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; I1GR46; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 365 466 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 626 676 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 365 466 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 945 AA; 104193 MW; EF47865A6ED87015 CRC64; MAMAAVPAKR CMNTACGAAA PGVGGAAGEW RKGWPLRSGG FAVLCDKCGL AYEQLVFCDI FHPQESGWRD CSFCGKRLHC GCAASKIFYG LLDSGGVQCM NCMQNSRPQP VSCQVAPKLF LSPNNQRLFG KSDELLPGRP LESPPLMLDS RNDDIAIVAK SNHPFMVKNI EPGQSSNIFR QKEIENGARQ IKWEQPTLSI GDMGRMPFLI KAQSTLESPQ SQCTPRDDIR DPTADSTTSE SLSEACLSMS LAITNNGNKT EATSTMERPS LSPTTLFSDG RELATSLSPF QHAQRARHYL TRPPRVAEGA AFDPMKDGFP HLRVARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR PLTIQDSKGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIEPGGKLVM GFRKATNTVS LPDSQISAIA NGSLLGDTFF SSPSENLSIV SGYSGFLQSM KGATDHHPSS LFDHHANSAD GDVSWLKTDR FGGRSDEGSL QFLQRRSRNI GSKSRRLLMD AEDALELKLS WEEAQELLRP APSAKPTVVM IEDYEFEEYD EPPVFAKRSI FTRRSTGEQD QWIQCDDCSK WRRLPLNVII ASKWTCPDNT WDPKSCSCST PQELATKDLH SILQQYEDIR RRKSSYFLKQ NIPEMDASSF DALAAATVFG EVGNQGASSV ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PACTCNVCMT VRRRFKTLMM RKKQRQSERE EAEASKKITW MSRDEPEGSS LSRSPQTLDP ARDGDVTMLD KVDMNKGHID LNFHPASRDE VSMVGLLEVA SRPLESYMKQ NGLVSLAGEQ ASSSTQPPMV LPQAAPVGSE EQTPDEARVM SVVEEREREP TDSMAIDEAA GENYGIAATD NAATA // ID I1GTG4_BRADI Unreviewed; 989 AA. AC I1GTG4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK15758.1, ECO:0000313|EnsemblPlants:BRADI1G24720.1}; GN Name=LOC100839461 {ECO:0000313|EnsemblPlants:BRADI1G24720.1}; GN ORFNames=BRADI_1g24720 {ECO:0000313|EMBL:KQK15758.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G24720.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK15758.1, ECO:0000313|EnsemblPlants:BRADI1G24720.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK15758.1, RC ECO:0000313|EnsemblPlants:BRADI1G24720.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G24720.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G24720.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK15758.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK15758.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK15758.1; -; Genomic_DNA. DR RefSeq; XP_010236989.1; XM_010238687.2. DR STRING; 15368.BRADI1G24720.1; -. DR EnsemblPlants; BRADI1G24720.1; BRADI1G24720.1; BRADI1G24720. DR GeneID; 100839461; -. DR Gramene; BRADI1G24720.1; BRADI1G24720.1; BRADI1G24720. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; I1GTG4; -. DR OMA; PAGMNQI; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 498 599 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 745 795 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 498 599 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 989 AA; 109213 MW; E0D62960EEBE3C2B CRC64; MSSPAPPRPP PPSAPTPATA PTATPMSVQP PPPQPKPPPP QQPSGSSAPP PPQFHPPASH QQPQPHPAAS HQQPQPHTPV SHQQPQQPHP AGSHQQQQQQ PHPPSSHQQR PRICFNTHCK DPKSEGPRRR GWRLRSGDFA ELCDRCYGSF EQGSFCETFH SEVAGWRNCE ACGKRLHCGC IVSIHAYALL DAGGVDCILC TRKSYAAAAM APNQMCPTPT MHMPQNVADK KDSFVKSWRP PGGPYPSQWR QNSLWSVSGI QSDLQQRLAY EFDRPSGSEK LPPGRTFIHA QEKKFDDMHD RPTTPAGMNQ IIRDRHADGH GQQTSMDPAH SYALYQREGP NPNSLHDHSH HGGESDSTSA RKGIISEGCS SNIVSSSFKL DSRHPLESLL KENISLLPVG VGCTITNCPP VNGRNDIVRI IPHQPTSQTP SSAASSAQKQ FYSHTVIDPE YQSHFRNGKP RMDAKARSQL LPRYWPRITD KELQHLSADS KSVITPLFEK MLSASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDG SGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMHLQAGDIV TFSRIDPEGK LIMGFRKSTT QEQILRQEQP TKPANAAVTA PPEVNVNVAR PHEVNTENKN ISPVDQAAVG KVENGGVAQK EGPGTARSSP GSLKRKATSV GPKIKRFRMD NEESMELKIT WEEAQELLRP PLKAPSVVIV DGHEFEEYEE PPILGRRTYF VTDQSGENHQ WAQCEDCSKW RKLPVGALLP SKWTCSDNKW DPERTSCESA QEATTEELAE LFPIKAGAAK KPKARIEPDS IDVSDGLDTL ANLAILGEGE SLPSQPTTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN VCMTVRRRFK TLMLRREKRL SEKDTEEPRR KEVPQTGSDP PLGSTSPTSS PQKADANPDD AEDMVVDHRM SSSPVKNQID LNIQPEREDE QSPKSNAVGA ARLPRDNPT // ID I1GW40_BRADI Unreviewed; 907 AA. AC I1GW40; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100837546 {ECO:0000313|EnsemblPlants:BRADI1G32547.1}; GN ORFNames=BRADI_1g32547 {ECO:0000313|EMBL:KQK17112.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G32547.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK17112.1, ECO:0000313|EnsemblPlants:BRADI1G32547.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK17112.1, RC ECO:0000313|EnsemblPlants:BRADI1G32547.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G32547.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G32547.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK17112.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK17112.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK17112.1; -; Genomic_DNA. DR RefSeq; XP_003563403.1; XM_003563355.3. DR STRING; 15368.BRADI1G32547.1; -. DR EnsemblPlants; BRADI1G32547.1; BRADI1G32547.1; BRADI1G32547. DR GeneID; 100837546; -. DR Gramene; BRADI1G32547.1; BRADI1G32547.1; BRADI1G32547. DR KEGG; bdi:100837546; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1GW40; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 775 859 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 907 AA; 100362 MW; 78B1D8F56E3D2CDC CRC64; MRLSSPAGSV LSGQAAASPE DVEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMNADPETDE VYAQMTLQPL NPQELKDPYL PAELGTANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTLQP PAQELFAKDL HGNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNDSNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PCEFVIPLAK YVKAVYHTRI SVGMRFRMLF ETEESSVRRY MGTITGISDL DAVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPTPFPLR LKRPWPTGLP SLHGGKDDDL TSSLMWLRDG SNPGFQSLNF GGVGMSPWMQ PRLDASLLGL QPDIYQTIAA TAFQDPTKMS PTMLQFQQPQ NMVGRAMPLL QSQILQQVQP QFQQQPYLQN INGAAIQGQA QSEFLQQQLQ RCQSFNEQKP QIQHQQEQHQ QQQQSQSMQV PQHQHIQQQK NIANYQSSFS QLSSAPQSSP TTLQTVLPFS QPQSFSDTNM SSLSPSSASA MHNTLGPFSS EAASHLGMPR PTAVPVPDPW SSKRVAVESL LTSRPQATSN IEHLDSTPPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL LMQGGIPSLH DENDSTTIPY STSNFLSPSQ NDFSLDQTLN SPGCLDESGY VPCSHNPNQG NQPPATFVKV YKSGTYGRSL DITRFSSYHE LRRELGRLFG LEGQLEDPLR SGWQLVFVDR EEDVLLVGDD PWQEFVNSVF CIKILSPQEV QQMGKQGLEL LSSAPSKRLG SSCDDYASRQ ESRSLSTGIA SVGSVEF // ID I1GWC1_BRADI Unreviewed; 706 AA. AC I1GWC1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100824778 {ECO:0000313|EnsemblPlants:BRADI1G33160.1}; GN ORFNames=BRADI_1g33160 {ECO:0000313|EMBL:KQK17233.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G33160.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK17233.1, ECO:0000313|EnsemblPlants:BRADI1G33160.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK17233.1, RC ECO:0000313|EnsemblPlants:BRADI1G33160.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G33160.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G33160.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK17233.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK17233.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK17233.1; -; Genomic_DNA. DR RefSeq; XP_003563445.1; XM_003563397.3. DR STRING; 15368.BRADI1G33160.1; -. DR EnsemblPlants; BRADI1G33160.1; BRADI1G33160.1; BRADI1G33160. DR GeneID; 100824778; -. DR Gramene; BRADI1G33160.1; BRADI1G33160.1; BRADI1G33160. DR KEGG; bdi:100824778; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; I1GWC1; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 624 704 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 706 AA; 75782 MW; EF17E6FA41E55F3B CRC64; MITFVDSAAG ERERGGDDGR CLDPQLWHAC AGGMVQMPPV SSKVYYFPQG HAEHAQCGGG DFPPGAGAGR GIPALVLCRV AGVHFMADPD TDEVFAKIRL VPARPHEQPG GDAADDGGGI NGAAAGHAEA EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTVLAKD VHGVVWKFRH IYRGTPRRHL LTTGWSSFVN QKKLVAGDSI VFMRTENGDL CVGIRRAKKG GIGGPELLPP PPPPPGTNYG GFSMFLRGEE DGSNKMMAAA AAARGKARVR VRPEEVAEAA NLAASGQPFD VVYYPRASTP EFCVKAGAVR AAMRTQWCPG MRFKMAFETE DSSRISWFMG TVSAVQVSDP IRWPNSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPA IHLAPFSPPR KKLCVPFYPE LPLDGQFPAP MFHGNPLGRG GVGPMCYFPD GTPAGIQGAR HAQFGISLSD LHLNKLQSSL SPHGLHNQID HGAQPRIAAG LIIGHPKARD DISCLLTIGN HQNSKKSDGK KAAPQLMLFG KPILTEQQIT LGNAGGFSPT SARKSPSDGS AEKTANNSDL SSPRSNQNGT TENLSCGGVP LCQDSKVLDL GLETGHCKIF MQSEDVGRTL DLAAVGSYDE LYRRLADMFG IEKAELMRQV FYRDAAGALK HTGDEPFSDF TKTARRLTIL TGTGGE // ID I1GWQ9_BRADI Unreviewed; 1149 AA. AC I1GWQ9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100822102 {ECO:0000313|EnsemblPlants:BRADI1G34340.1}; GN ORFNames=BRADI_1g34340 {ECO:0000313|EMBL:KQK17417.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G34340.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK17417.1, ECO:0000313|EnsemblPlants:BRADI1G34340.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK17417.1, RC ECO:0000313|EnsemblPlants:BRADI1G34340.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G34340.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G34340.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK17417.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK17417.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK17417.1; -; Genomic_DNA. DR RefSeq; XP_003563519.1; XM_003563471.3. DR STRING; 15368.BRADI1G34340.1; -. DR EnsemblPlants; BRADI1G34340.1; BRADI1G34340.1; BRADI1G34340. DR GeneID; 100822102; -. DR Gramene; BRADI1G34340.1; BRADI1G34340.1; BRADI1G34340. DR KEGG; bdi:100822102; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1GWQ9; -. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000008810; Chromosome 1. DR ExpressionAtlas; I1GWQ9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1015 1099 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 601 628 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1149 AA; 127564 MW; 1848372802FCA44E CRC64; MMKQQQQQPA PAPAVSSAAG AAVTVASLAG AGCEGEKKAP VINSELWHAC AGPLVSLPPA GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY PNLPSKLICL LHNITLHADL ETDEVYAQMT LQPVTSYGKE ALQLSELALK QSRPQNEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIFVRDER QQLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHADA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFICPP PFFGSKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ GSSFANTAMQ SEYLRSITNP SMQNIGSTDL SRQLLQNQLL QQNNIQFNTP KLPQQMQPNN DLSKAALPLN QLGVSTKLQE QTQDASNLQR QQQSMNYALP LSQAQTSLAQ AQVLVQNQMQ QQPMSQNQLP AASQPPLPQQ QQHQQQQQKL LHQQQQQLLL QQQQLQQHNQ NQQQLNKMPA QLPNLANQQL QLSDQQLQLQ LLQKLQQQQQ SFLSQPGVTL AQLPLIQEQQ RLLMDMQQQL SSSHSLTQQQ MMPQQSTKIP SQTTSMPLPM QPDTQQKLPQ KQAVPADTSE AAVPPTTTLN FSSANGSPLR MPGATHSVVT EEIPSCSTSP STANGNHLLQ PGTGRNQYCN MINTEKVPQS TPPMSVPSSL EVVTGPPRIA KELPKLTSNV KQSMVASKLQ NAGAGPQNFV DNAPPTDYLE TASSATSVWL SQTDGLLHQS FPMSNFNQQP MFKDAPPDTE IHADVPSNNT LFGISNDGQV GFPMGTDDFL TNGLDTAKYQ NHISTDIDNS YIIPKDAQQE ISSSMVSQSF GASDMAFNSI DSGINDGTFF NRSSWPPAPP IKRMRTFTKV YKRGAVGRSI DISQYAGYDE LKHALARMFS IEGQLEERQR IGWKLVYRDH EDDILLLGDD PWEEFVNCVK YIRILSPQEV QQMSLDGDLG SNIIPNQACS SSDGGGNAWR ARCDQNSGNP STGSYDQFE // ID I1GWR0_BRADI Unreviewed; 1083 AA. AC I1GWR0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100822102 {ECO:0000313|EnsemblPlants:BRADI1G34340.2}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G34340.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G34340.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G34340.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G34340.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G34340.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI1G34340.2; BRADI1G34340.2; BRADI1G34340. DR Gramene; BRADI1G34340.2; BRADI1G34340.2; BRADI1G34340. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000008810; Chromosome 1. DR ExpressionAtlas; I1GWR0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1015 1083 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 601 628 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1083 AA; 120425 MW; 6F2ED4861A524E52 CRC64; MMKQQQQQPA PAPAVSSAAG AAVTVASLAG AGCEGEKKAP VINSELWHAC AGPLVSLPPA GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY PNLPSKLICL LHNITLHADL ETDEVYAQMT LQPVTSYGKE ALQLSELALK QSRPQNEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIFVRDER QQLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHADA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFICPP PFFGSKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ GSSFANTAMQ SEYLRSITNP SMQNIGSTDL SRQLLQNQLL QQNNIQFNTP KLPQQMQPNN DLSKAALPLN QLGVSTKLQE QTQDASNLQR QQQSMNYALP LSQAQTSLAQ AQVLVQNQMQ QQPMSQNQLP AASQPPLPQQ QQHQQQQQKL LHQQQQQLLL QQQQLQQHNQ NQQQLNKMPA QLPNLANQQL QLSDQQLQLQ LLQKLQQQQQ SFLSQPGVTL AQLPLIQEQQ RLLMDMQQQL SSSHSLTQQQ MMPQQSTKIP SQTTSMPLPM QPDTQQKLPQ KQAVPADTSE AAVPPTTTLN FSSANGSPLR MPGATHSVVT EEIPSCSTSP STANGNHLLQ PGTGRNQYCN MINTEKVPQS TPPMSVPSSL EVVTGPPRIA KELPKLTSNV KQSMVASKLQ NAGAGPQNFV DNAPPTDYLE TASSATSVWL SQTDGLLHQS FPMSNFNQQP MFKDAPPDTE IHADVPSNNT LFGISNDGQV GFPMGTDDFL TNGLDTAKYQ NHISTDIDNS YIIPKDAQQE ISSSMVSQSF GASDMAFNSI DSGINDGTFF NRSSWPPAPP IKRMRTFTKV YKRGAVGRSI DISQYAGYDE LKHALARMFS IEGQLEERQR IGWKLVYRDH EDDILLLGDD PWE // ID I1GX58_BRADI Unreviewed; 406 AA. AC I1GX58; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G35587.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G35587.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G35587.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G35587.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G35587.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G35587.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI1G35587.1; BRADI1G35587.1; BRADI1G35587. DR Gramene; BRADI1G35587.1; BRADI1G35587.1; BRADI1G35587. DR eggNOG; ENOG410JQPS; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; I1GX58; -. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 146 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 313 406 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 146 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 313 406 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 45027 MW; D0B397E57B2BF047 CRC64; MAHSARRLRP KFAAPSLSWS CLHKLRVPAE FAAGLDPGAG VQGEEDGAEQ REVLVVGPLG KVWRVELLCQ QQDGGGGGGV WWLGGGWAEL AAAHGVGEGW SVVLRRERRG VATVAAFDPA CCLARLCTPR PGFERNDITG VMFKNRPRFI KLLQPDDLEK MRVPDKFVQE HLTETESCPS SQTAIILSPL SKFWRVELER GQSDVLFKGG WARFLMAHDL SQGNILVFRY EGNMVFSVEV FLQNGCLKEY TRAGALILTD DPNGPRTGTP QSGNELVVAT ASKKRKYTKR VVSPNSANKV GSQCKLANTL RKPSFKKQIN RYSLKSFLAV KRTFCSSIGL VSACTIKLQT SMDSTRSWSV PFNTANTYGY ITGPRWKRFC RDNKLKEGDL CTFNIVKTTV WHVVIN // ID I1GZP0_BRADI Unreviewed; 227 AA. AC I1GZP0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK18926.1, ECO:0000313|EnsemblPlants:BRADI1G45517.1}; GN Name=LOC100840502 {ECO:0000313|EnsemblPlants:BRADI1G45517.1}; GN ORFNames=BRADI_1g45517 {ECO:0000313|EMBL:KQK18926.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G45517.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK18926.1, ECO:0000313|EnsemblPlants:BRADI1G45517.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK18926.1, RC ECO:0000313|EnsemblPlants:BRADI1G45517.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G45517.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G45517.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK18926.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK18926.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK18926.1; -; Genomic_DNA. DR EMBL; CM000880; KQK18927.1; -; Genomic_DNA. DR RefSeq; XP_010227844.1; XM_010229542.2. DR RefSeq; XP_010227845.1; XM_010229543.2. DR STRING; 15368.BRADI1G45517.1; -. DR EnsemblPlants; BRADI1G45517.1; BRADI1G45517.1; BRADI1G45517. DR GeneID; 100840502; -. DR Gramene; BRADI1G45517.1; BRADI1G45517.1; BRADI1G45517. DR KEGG; bdi:100840502; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; I1GZP0; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 26375 MW; DFCA9C29526774D5 CRC64; MAGAIPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPAKSLKRK SRAQGEAGQD VPLRRSGRVA SLPEQPKYRY EDSLAFEKKP RRTYSTRKDL TNRVYATDEA RDYTITKAEE LQDKLGSDYP IFVKPMTQSH VTGGFWLGLP TQFCRKYLPK RDERIILVDE EDDESETLYL ALKRGLSAGW RGFAIDHKLV DGDCLVFQLI ERTKFKVYII RESSYYE // ID I1H027_BRADI Unreviewed; 1063 AA. AC I1H027; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100838160 {ECO:0000313|EnsemblPlants:BRADI1G46602.1}; GN ORFNames=BRADI_1g46602 {ECO:0000313|EMBL:KQK19142.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G46602.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK19142.1, ECO:0000313|EnsemblPlants:BRADI1G46602.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK19142.1, RC ECO:0000313|EnsemblPlants:BRADI1G46602.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G46602.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G46602.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK19142.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK19142.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK19142.1; -; Genomic_DNA. DR EMBL; CM000880; KQK19143.1; -; Genomic_DNA. DR EMBL; CM000880; KQK19144.1; -; Genomic_DNA. DR EMBL; CM000880; KQK19145.1; -; Genomic_DNA. DR RefSeq; XP_003564148.1; XM_003564100.3. DR RefSeq; XP_014753144.1; XM_014897658.1. DR STRING; 15368.BRADI1G46602.1; -. DR EnsemblPlants; BRADI1G46602.1; BRADI1G46602.1; BRADI1G46602. DR EnsemblPlants; BRADI1G46602.2; BRADI1G46602.2; BRADI1G46602. DR GeneID; 100838160; -. DR Gramene; BRADI1G46602.1; BRADI1G46602.1; BRADI1G46602. DR Gramene; BRADI1G46602.2; BRADI1G46602.2; BRADI1G46602. DR KEGG; bdi:100838160; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 947 1040 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 511 555 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1063 AA; 118261 MW; FE8F97D68BD44DB8 CRC64; MKDQGSAGVS PGPPEGEKKA INSELWHACA GPLVAMPPVG SLVVYFPQGH SEQVAASMNK EVDVIPNYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVSKYDRDAM LASELGLKQN KQPMEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFAM QPPAQELMAK DLHDISWKFR HIFRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRSTR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSQ LFPGLSLVQW MAMQQNPQML PTSAPAVQSP YLTSSALALQ DGMGTGNEDP TRRLNIQGQN IGLPNFQVGS KIDHSVMAQH QQQPHQLSQQ QQVQPSQQSS MALQQQQAQL LQQNAIHLQQ QQEHLQRQQS QSQQQQEHLQ RQQSQPQQQL RTAEAMEQHK LREQQPQGGQ AVSQAQLLSQ IFQPSSSQLQ QLGLPKSPTQ RPGFPGLQTA GALQQPALTQ TPQVQQAAEY QQALIQSQQQ QLQQLSQPEM QLQLLQKIQQ QNMLSQLNPQ HQSQLIQQLS QKNQEFLQQQ ILQHQLGGSD VLGQFKQSQQ TPSKHMTGSL TPQQLVRSQS ALAESEDPSS STAPSAGRIS PMNSLSKTHH SSRNLTEMTT SPHIDNLLQE IQSKSDNRNK NDRQGSKETI PVPNRYPVSD QLDASSATSF CLDESPREGF SFPPVCLDSN AQVDPRDNFL IAENVDSLMP DALLSRGMAS GKGICDLPSG QRDHREVENE LSSAAFSSQS FGVADMSFKP GCSGDMAVND GGMPSQGLWN NQTQRMRTFT KVQKRGSVGR SIDITRYRNY DELRHDLACM FGIQGQLEDP YRMDWKLVYV DHENDILLVG DDPWEEFVSC VKSIKILSSV EVQQMSLDGD LGGIPSQTQA CSASDDANAW RGS // ID I1H0U1_BRADI Unreviewed; 751 AA. AC I1H0U1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK19508.1, ECO:0000313|EnsemblPlants:BRADI1G48690.1}; GN Name=LOC100828253 {ECO:0000313|EnsemblPlants:BRADI1G48690.1}; GN ORFNames=BRADI_1g48690 {ECO:0000313|EMBL:KQK19508.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G48690.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK19508.1, ECO:0000313|EnsemblPlants:BRADI1G48690.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK19508.1, RC ECO:0000313|EnsemblPlants:BRADI1G48690.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G48690.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G48690.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK19508.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK19508.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK19508.1; -; Genomic_DNA. DR RefSeq; XP_014752140.1; XM_014896654.1. DR STRING; 15368.BRADI1G48690.1; -. DR EnsemblPlants; BRADI1G48690.1; BRADI1G48690.1; BRADI1G48690. DR GeneID; 100827560; -. DR Gramene; BRADI1G48690.1; BRADI1G48690.1; BRADI1G48690. DR KEGG; bdi:100827560; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; I1H0U1; -. DR OMA; YLEECTG; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 293 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 635 735 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 293 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 635 735 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 96 147 {ECO:0000256|SAM:Coils}. FT COILED 152 269 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 751 AA; 87388 MW; 5B6583E37373294D CRC64; MVVPKKQNTT MDMVSNTKEV KVKEEERDNL VNDKVRGKKM EMNQKREEDN NKKDKEKKKA PKPKVAKYKK NKGKNRRDKE KERGEECQRE MDERIKEQEH NERVDEEKEK KDKEEEQKKR KGKEREEEKA KKDIEEEKRK TKEKERKEDW PREMEKEQRE RVDKEKAKKD NEEEQKKRKE KELHEDRKRK GEQNERNKKE REEWQRETEK KEQMEIVDKE KAKKDKEEKK RKRSEEGQEK EVHNDRERKE EMELEVEEDE QNERNGNEEP TKSVFPNFFK VVMPGHCTEQ VEIPSSLNGY LENESPGVVS LRGPSGNTWL VELAANSRGL HLAHGWKEFF NDHRIQLEYF LVFLYEGQSQ FSVRVFDKSG CEAHDAFLAR PCNDTVTNDD EGGMITNVDG MDPQEEHIGH VAAENDGGDM GTNVGGTDQM EEDACSLAEE DKEDMDTNAG DTNPQEEDTG GEEPECSEEE EDERHMGSND ASDTSEKNDQ DDNANSAPDT SQDDGVYHGL NTRKKRFRKI DGILAEDDRH ASKKRKVMGK RCVASPHSSA SKITASGATM KVPDTTNISK SIVPRPPRFH CTLFNKSNNV PQPGEVLTKV QRRPALISQR RPVTEEEKSD ALERAMRFRS PRPFTHKALT YSEVYTTYFM VIPHEFVQKY LPKHSRKMTL WDPQAKPWEV SYVYWEWDSC SSGAAFSAGW GAFAAYNNLE KSDVCVFEIL DDDDDEYSIK VHIHRVVLEI TPCIDPLCEG N // ID I1H1C4_BRADI Unreviewed; 690 AA. AC I1H1C4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G50240.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G50240.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G50240.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G50240.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G50240.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G50240.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI1G50240.1; -. DR EnsemblPlants; BRADI1G50240.1; BRADI1G50240.1; BRADI1G50240. DR Gramene; BRADI1G50240.1; BRADI1G50240.1; BRADI1G50240. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; I1H1C4; -. DR OMA; KECAMER; -. DR OrthoDB; EOG09360IKT; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 572 669 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 155 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 572 669 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 26 53 {ECO:0000256|SAM:Coils}. FT COILED 62 149 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 690 AA; 78949 MW; 044C6F1810D6262D CRC64; MVSSMQNVKV KEEKCNSMEN EKEMNMKEQR GRVNTQKAKK NKEEEQRNEE KGRLGSKTEM MIEKEQRDMM DKEKAKKDKE EEQRKKEEKE REGCQLRETE EKKKEKKQRE RMDMEKETKD KEDEQEKEVH EYRERKDKQY HERNEEEETT ENTFHHFFKV VMPGESTQQL KIPRAFKKYL ENESSGVVSL RDASGNTWRV GLVANSMELS FVRGWERFFS DHRIHVGDFL VFRYNGQSQF SVLVFGRSGC EVECAFLPQS YNDWVIEDDE GSMGINVDGT DPHEEDPRNM AKEKDGGDID MNAGGTDLTR EDVGYTLAEG DDKVDMHTNR DVNNPQEEDA GNMAEENDGM DLDTNVGATN LLEEDPRYTL AGHDKVDTGI NTYVTNPQEQ DAGNMAKEND GGGMGTNAGG TDVMEEDVGY ALAKYDDKVD MDTSIDVTNT QELDACNVAG ENVGEDMDTN AHRTDLMDDQ DAGYALAEDD KGDMDTIIDV TIPQKEDIVV ETNTMVGSIV PVRSRFDWTL FNESNNVPQL GKVFAKVQRV PEVTSQRRAV IEEEVEYAIE KASHFLSQRS FSFKAMKYSE VYTTYFMIIP EILVKNSLPK KDMQMTLWDP QGKTWDVSYV YQSRGGVCSA AFATGWGAFS VHNNLEEWDV CVFEVLDSSN IKVHVHRVVC EITPYIQRPP QLDLNSRSSC // ID I1H1W1_BRADI Unreviewed; 165 AA. AC I1H1W1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK19992.1, ECO:0000313|EnsemblPlants:BRADI1G51730.1}; GN ORFNames=BRADI_1g51730 {ECO:0000313|EMBL:KQK19992.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G51730.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK19992.1, ECO:0000313|EnsemblPlants:BRADI1G51730.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK19992.1, RC ECO:0000313|EnsemblPlants:BRADI1G51730.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G51730.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G51730.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK19992.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK19992.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK19992.1; -; Genomic_DNA. DR RefSeq; XP_014751968.1; XM_014896482.1. DR EnsemblPlants; BRADI1G51730.1; BRADI1G51730.1; BRADI1G51730. DR GeneID; 104582266; -. DR Gramene; BRADI1G51730.1; BRADI1G51730.1; BRADI1G51730. DR KEGG; bdi:104582266; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; I1H1W1; -. DR OMA; RLDQGWA; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 165 AA; 18069 MW; 89CE34D19F3AC131 CRC64; MENSAAGSSW RQMPDVLIVK PSGEIIFPAS DQQQHETTPL SGDHPFFTAV LSRTQLRDMV IPARFQRRLP ARRAGAVVRC GGRSWAMNYC GDTKVKRFDT AWAHFAADNR LRFGDACVFE LVSGAGGREL VFEVQVLRGG GLPEPEPEEE DGVVAGKPIV IGDDD // ID I1H1Z3_BRADI Unreviewed; 193 AA. AC I1H1Z3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK20030.1, ECO:0000313|EnsemblPlants:BRADI1G52000.1}; GN ORFNames=BRADI_1g52000 {ECO:0000313|EMBL:KQK20030.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G52000.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK20030.1, ECO:0000313|EnsemblPlants:BRADI1G52000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK20030.1, RC ECO:0000313|EnsemblPlants:BRADI1G52000.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G52000.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G52000.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK20030.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK20030.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK20030.1; -; Genomic_DNA. DR RefSeq; XP_014751764.1; XM_014896278.1. DR EnsemblPlants; BRADI1G52000.1; BRADI1G52000.1; BRADI1G52000. DR GeneID; 104582267; -. DR Gramene; BRADI1G52000.1; BRADI1G52000.1; BRADI1G52000. DR KEGG; bdi:104582267; -. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR InParanoid; I1H1Z3; -. DR OMA; IDCRRRA; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 20500 MW; 78DF37B29D504CD5 CRC64; MALTAAARVS NSTGGEGGVS GSGNGVCGGV REHMFDKVVT PSDVGKLNRL VVPKHFAEAH FVVPGSGGGA ALLRFEDGRG KGKAWCFRFS YWGSSQSYVM TKGWSGFVRD RRLAAGDTVS FSRAGHRLFI DCRRRGSASG GSMAAAAAEA SRALDDVETT TTRRLMAGRR RVRLFGVDVE VTDEPLDLQL GLN // ID I1H4T7_BRADI Unreviewed; 279 AA. AC I1H4T7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G60530.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G60530.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI1G60530.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI1G60530.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G60530.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G60530.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI1G60530.1; BRADI1G60530.1; BRADI1G60530. DR Gramene; BRADI1G60530.1; BRADI1G60530.1; BRADI1G60530. DR eggNOG; ENOG410JS61; Eukaryota. DR eggNOG; ENOG41118Q2; LUCA. DR InParanoid; I1H4T7; -. DR OMA; MIINEAM; -. DR OrthoDB; EOG09360PZA; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 279 AA; 32524 MW; 88162C3777E33A68 CRC64; MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PKQKRKAPAQ RDAGKDAPRR RSNRIASIPE RPNYRENGIT LSFVFLFEMG VYPGLRKQAI YSQKQKELKP DHAYAVSKAE ELKDELSSDY PTFVRPMTQT LSNLHIPSQF STEHLPQQDA RVYLVDDDEE EYRTFYRPHT SSLNKGWREF AVDHELVDGD CLVFQLIKKA FFKETAFNYS QNMTIRSTYL GQALTMKMII NEAMPRWQSI CQVHLADKII KLLMSYDQNL GIVLLRGKL // ID I1H850_BRADI Unreviewed; 293 AA. AC I1H850; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK22917.1, ECO:0000313|EnsemblPlants:BRADI1G70067.1}; GN Name=LOC100821375 {ECO:0000313|EnsemblPlants:BRADI1G70067.1}; GN ORFNames=BRADI_1g70067 {ECO:0000313|EMBL:KQK22917.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G70067.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK22917.1, ECO:0000313|EnsemblPlants:BRADI1G70067.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK22917.1, RC ECO:0000313|EnsemblPlants:BRADI1G70067.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G70067.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G70067.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK22917.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK22917.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK22917.1; -; Genomic_DNA. DR RefSeq; XP_003561895.1; XM_003561847.3. DR EnsemblPlants; BRADI1G70067.1; BRADI1G70067.1; BRADI1G70067. DR GeneID; 100821375; -. DR Gramene; BRADI1G70067.1; BRADI1G70067.1; BRADI1G70067. DR KEGG; bdi:100821375; -. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; I1H850; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG09360IIV; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 32877 MW; 90E5F1B5E47AF763 CRC64; MEDENPDLSG FEFFRVILEN TWEKQRMPDE FAAALDGREP QELKLREAGG GRLWAVDVVF DGDGHMYLTR GWAQFARAHG LGLGSFLVFT YDGGSTLSVS VFGVTTCRKR FQRKKEDTDQ EDDAGFGFDS PPLSSSPSGS GSRSKSSGGA GYEEGGSEMD GAEDDDDVSK SRFSVMLRQC HFGLRQKQYL NVPVEFQVAQ GYAGRSKVEL RMRGKAWSVK LKQGVCPKRQ PRTSLRYGWH QFCVDNRLAV GDTCFFRVLH PDQEEDEDDG DGDGEERHVL KVEVRRRDGS FVK // ID I1H8X5_BRADI Unreviewed; 235 AA. AC I1H8X5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK23265.1, ECO:0000313|EnsemblPlants:BRADI1G72330.1}; GN ORFNames=BRADI_1g72330 {ECO:0000313|EMBL:KQK23265.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G72330.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK23265.1, ECO:0000313|EnsemblPlants:BRADI1G72330.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK23265.1, RC ECO:0000313|EnsemblPlants:BRADI1G72330.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G72330.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G72330.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK23265.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK23265.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK23265.1; -; Genomic_DNA. DR RefSeq; XP_010229077.1; XM_010230775.2. DR EnsemblPlants; BRADI1G72330.1; BRADI1G72330.1; BRADI1G72330. DR GeneID; 104581853; -. DR Gramene; BRADI1G72330.1; BRADI1G72330.1; BRADI1G72330. DR KEGG; bdi:104581853; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; I1H8X5; -. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 235 AA; 26602 MW; 74FB031108F899DF CRC64; MAIEKGISPY EAARERKVQE NKRKMEALNL HHLSAAVAHA PKTPSPMKQK RRRIIQAAVV APSPPRRSRR LAHLPEVKYA EVAPESERMK RWSPRKPTEI MCWGSGGSIS MEARLEAARK AEELESELDP EFPSFVKRML HSHVVRGFWL GLPSHFCDSY LPKQDSTITL VDEKDEEFET NYLAYKKGLS GGWAGFALSH GILDGDSTVF QLIKPTTFKV HIIRATVDND NKESE // ID I1HAE4_BRADI Unreviewed; 311 AA. AC I1HAE4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK23932.1, ECO:0000313|EnsemblPlants:BRADI1G77150.1}; GN Name=LOC100843910 {ECO:0000313|EnsemblPlants:BRADI1G77150.1}; GN ORFNames=BRADI_1g77150 {ECO:0000313|EMBL:KQK23932.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI1G77150.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK23932.1, ECO:0000313|EnsemblPlants:BRADI1G77150.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK23932.1, RC ECO:0000313|EnsemblPlants:BRADI1G77150.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI1G77150.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI1G77150.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK23932.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK23932.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000880; KQK23932.1; -; Genomic_DNA. DR RefSeq; XP_003558950.1; XM_003558902.2. DR EnsemblPlants; BRADI1G77150.1; BRADI1G77150.1; BRADI1G77150. DR GeneID; 100843910; -. DR Gramene; BRADI1G77150.1; BRADI1G77150.1; BRADI1G77150. DR KEGG; bdi:100843910; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; I1HAE4; -. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008810; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 311 AA; 33844 MW; F69D258559DC0BD1 CRC64; MEFTAIRSPA AGRTSEHDGG GPSSTTDQVQ VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSTTA AAASTGGGGG LLLSFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFG RGVGSEAAKG RLFIDWRRRP DSMASALPLP RFTRLPNSVP FAPWTMTAPQ QQGHPFFSGS GGRAFMAPSP PSFVYDDGYY GAPGHGGGRQ VLYYRPQQQQ HAAVVLESVP VRMGMAMAAE EAVPSSGTKR VRLFGVNLDY SEEDSNSRPA PMQLQQLMSP ASSTSTSSSS GKARCSLNLD L // ID I1HBV3_BRADI Unreviewed; 363 AA. AC I1HBV3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G02710.1}; GN Name=LOC100838675 {ECO:0000313|EnsemblPlants:BRADI2G02710.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G02710.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G02710.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G02710.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G02710.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G02710.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI2G02710.1; -. DR EnsemblPlants; BRADI2G02710.1; BRADI2G02710.1; BRADI2G02710. DR Gramene; BRADI2G02710.1; BRADI2G02710.1; BRADI2G02710. DR eggNOG; ENOG410JSZ2; Eukaryota. DR eggNOG; ENOG41108C9; LUCA. DR InParanoid; I1HBV3; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 199 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 199 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 363 AA; 39285 MW; FD8D48722622F79F CRC64; MAFGNESSST ATPQIMDDDM PEPDYSSTES AMEMECEAPA PGSSSSSPAP ASGAPRPAAA ATSSSSSSSR FKGVVPQPNG RWGAQIYEKH ARVWLGTFPD EPSAARAYDV AALRFRGRDA VTNYHHQISS SSSSPSSSSS SSPAATASEL AFLAEHSKAE IVDMLRKHTY ADELRQGLLR GHGAGARVRT PAWAREVLFE KAVTPSDVGK LNRLVVPKQH AERHFPEPEK TTGSKGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKGLAAG DTIVFSCASA AYGNGDQRQL FIDYRKMATT SNKDDAMESH SVVKLFGVDI AGGQGGGDRS AERYTCMLMP TIILDRVIRS GHN // ID I1HBV4_BRADI Unreviewed; 364 AA. AC I1HBV4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK02620.1, ECO:0000313|EnsemblPlants:BRADI2G02720.1}; GN Name=LOC100838978 {ECO:0000313|EnsemblPlants:BRADI2G02720.1}; GN ORFNames=BRADI_2g02720 {ECO:0000313|EMBL:KQK02620.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G02720.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK02620.1, ECO:0000313|EnsemblPlants:BRADI2G02720.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK02620.1, RC ECO:0000313|EnsemblPlants:BRADI2G02720.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G02720.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G02720.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK02620.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK02620.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK02620.1; -; Genomic_DNA. DR RefSeq; XP_003565321.1; XM_003565273.3. DR EnsemblPlants; BRADI2G02720.1; BRADI2G02720.1; BRADI2G02720. DR GeneID; 100838978; -. DR Gramene; BRADI2G02720.1; BRADI2G02720.1; BRADI2G02720. DR KEGG; bdi:100838978; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; I1HBV4; -. DR KO; K09287; -. DR OMA; MERNKAT; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 109 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 109 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 364 AA; 38957 MW; 080475E988443103 CRC64; MGVETEILSS TATQYSSAAS TATTESGAGR IPTAALPAVT SRPPTSSSSS SSSRFKGVVP QPNGRWGAQI YERHSRVWLG TFPDESSAAR AYDVAALRYR GRDAATNHPS TAGAAASVSG AELAFLAAHS KAEIVDMLRK HTYADELRQG LRRGQGAGAR VRTPAWARQV LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL KRRASSQLPE PEKTAGAGIG AGNKGVLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF VREKGLGAGD AIVFSCSSAY GEKQFFIDCK KKNGKLVSMP TACASATKGG EEEAGRVVRL FGVNIGAGEK RAAPAEQGGL FKRQCVQADR RQQQSPALGA FVCL // ID I1HDM5_BRADI Unreviewed; 540 AA. AC I1HDM5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G07980.1}; GN Name=LOC100842118 {ECO:0000313|EnsemblPlants:BRADI2G07980.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G07980.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G07980.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G07980.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G07980.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G07980.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G07980.1; BRADI2G07980.1; BRADI2G07980. DR Gramene; BRADI2G07980.1; BRADI2G07980.1; BRADI2G07980. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR InParanoid; I1HDM5; -. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 205 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 205 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 483 524 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 540 AA; 60141 MW; C7E3B5974B9837CA CRC64; MAIDQSLKTK RGRPAGAGSP AAKSMSKMEQ KMALVYQRLA LLDSESDKDA DVVPIVKLDE DLATVVDQQP TIINCDNTDS EEEYVPLRIV RPGRGDSAQK RLPCLSQTHD DHNINTATNK RERPASSQSA KSNKEQKKTL VKPKIALIES VSTNSSASDK DDHLVPMVSG VNGEKTFASV QGNCGSAMER AKELQGKLPA EHPSFIKHML QSHVIQGFWL GLPCDFCNKY LPKHDTAIVL EDEDGRNYDT KYLGTKQGLS AGWRGFAINH GIKVGDVVVF QLVYILRATN FSTTDGALGL LCLDAGKEKM PKQGSSNGVQ SKEEPKLTRV SSKVIHSDGS NLVSESIDGI QFSESDIDFD NVASFSNFSI IVDSLVIDCK FPNHLRKTYY ELCRAQKSFL HKNLLKQINL TLAVGVIMET INIAEGIRAC KAHTSSREDF VIWKKTLESF ELLGMNVAFL LKRMDQLLGL PDRSRDLVEC KEYKEIKLEQ AQAKEKIQDL ESKMLNLKDT LKNMDVEMEE MESSAKRRDE MVQRLATAPW // ID I1HDP2_BRADI Unreviewed; 701 AA. AC I1HDP2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100843643 {ECO:0000313|EnsemblPlants:BRADI2G08120.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G08120.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G08120.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G08120.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G08120.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G08120.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI2G08120.1; -. DR EnsemblPlants; BRADI2G08120.1; BRADI2G08120.1; BRADI2G08120. DR Gramene; BRADI2G08120.1; BRADI2G08120.1; BRADI2G08120. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; I1HDP2; -. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 78202 MW; 5806756CA446AF9B CRC64; MPPGGGRDAE LFSELWRACA GPLVELPQPG QRVFYFLQGH LEQVQQPSDQ KVLADQIKMF QVPYKILCRV VNVELKAEVE TEEVYAQITL LPEQDQEYLP SSPDPPLPEV RRPVVHSFSK ILTPSDTSTH GGFSVLRRHA NECLPPLDMS MPTPTQELIC KDILGSEWRF KHIYRGQPRR HLLTTGWSTF VTSKKLVYGD AFVYLRTEEG EQRVGVRHHV QKRTAMPSSV MSSQSMHLGV LASASHALQT KSIFLVYYRP RVSQSQYIVN VNKYFLTSKL RYTVGVRFKM SFEGEEVPVK KFSGTIVGDG ALSPQWSCSE WKSKKVQWDD PANCNGPERV SPWEIEPADG AASASTINVP LQSSIRNKRP RETTEDLDLQ SLNPTTQEFS LSGMPRQHDK IGDGPSNPNR MIPGNQVIWP GERAAGYSAV GSSSFCQKPL VRESWLEEFN LSRQAMSPTL SEISQKLYQV TRNDARAAPW PVLPAYQAQQ PALRLPCNTA LHSYRTEEAA PSLPKVTEKS KEPGMVRLFG VNLMKPTSGT ATADNAGAGA GETSARVAGP CEESGQVSAL SRVTKDHKVV NESPREIQSN QSCIARNRVK VQMHGNAVGR AVDLANLDGY EQLIRELEQM FDIKDIKQNF KVAFADNDGD TMKVGDDPWM EFCRMVKKIV IYPLEEEKME PHQTPISAAA AAPEQDPKTE P // ID I1HGF4_BRADI Unreviewed; 730 AA. AC I1HGF4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823758 {ECO:0000313|EnsemblPlants:BRADI2G16610.1}; GN ORFNames=BRADI_2g16610 {ECO:0000313|EMBL:KQK04887.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G16610.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK04887.1, ECO:0000313|EnsemblPlants:BRADI2G16610.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK04887.1, RC ECO:0000313|EnsemblPlants:BRADI2G16610.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G16610.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK04887.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK04887.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK04887.1; -; Genomic_DNA. DR EMBL; CM000881; KQK04891.1; -; Genomic_DNA. DR RefSeq; XP_003567902.1; XM_003567854.3. DR RefSeq; XP_014754927.1; XM_014899441.1. DR STRING; 15368.BRADI2G16610.1; -. DR EnsemblPlants; BRADI2G16610.1; BRADI2G16610.1; BRADI2G16610. DR GeneID; 100823758; -. DR Gramene; BRADI2G16610.1; BRADI2G16610.1; BRADI2G16610. DR KEGG; bdi:100823758; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; I1HGF4; -. DR KO; K14486; -. DR OMA; SANQAHE; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HGF4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 730 AA; 79556 MW; EA795496E302862E CRC64; MAGIDLNTVE EDEEESAAAA AGTGGDCSSS LHSQGSSAAT ASASASATPP PPPPPRQQAW PPSAVCLELW HACAGPVAPM PRKGSVVVYF PQGHLEQLGG DAAAANAPVP PHVFCRVVDV SLHADASTDE VYAQLSLLPE NEEAVRRKRE GAEEGSGGED GETGKQRFSR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELAAKDL HGTEWKFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK TGSAFPGLYS QCSNLGTLAN VAHAVATKGM FRIYYNPRLS QSEFIVPYWK FTKSLSQPFS VGLRFKMRYE SEDAAERRYT GIITGTGDAD PMWRGSKWKC LLVRWDDDVE CRRPNRVSPW EIELTSSASG SHLATPASKR LKPCLSHVNP EYMVPHGGGR PDFVESAQFR KVLQGQELLG YRTHDGTAVA TSRPCEARNS QYIDERSCSN DVGNSVLGIP RLGARTPYGN PGFPYHCSGF RESQRFQKVL QGQEVFHPYR GSLVDARIRS SGIHQQDGPY APGAANKWHS QLHGCAFRGP PAPVLPSQSA SSPPSVLMFQ QANSKVSRFE FGHGHLDMNE DDRHARFDST EGVGRSAQTL SLRPHLAAEV MDGHVAVENK SVGTNSCKIF GISLAEKVRA RDEMGCGDAN YPSSVQSLKQ QVPKSLGSSC ATVHEQRPVV GRAIDVQQWI // ID I1HGF5_BRADI Unreviewed; 728 AA. AC I1HGF5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823758 {ECO:0000313|EnsemblPlants:BRADI2G16610.2}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G16610.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G16610.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G16610.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G16610.2; BRADI2G16610.2; BRADI2G16610. DR Gramene; BRADI2G16610.2; BRADI2G16610.2; BRADI2G16610. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HGF5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 728 AA; 79341 MW; 75447FDA486B0A98 CRC64; MAGIDLNTVE EDEEESAAAA AGTGGDCSSS LHSQGSSAAT ASASASATPP PPPPPRQQAW PPSAVCLELW HACAGPVAPM PRKGSVVVYF PQGHLEQLGG DAAAANAPVP PHVFCRVVDV SLHADASTDE VYAQLSLLPE NEEAVRRKRE GAEEGSGGED GETGKQRFSR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELAAKDL HGTEWKFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK TGSAFPGLYS QCSNLGTLAN VAHAVATKGM FRIYYNPRLS QSEFIVPYWK FTKSLSQPFS VGLRFKMRYE SEDAAERRYT GIITGTGDAD PMWRGSKWKC LLVRWDDDVE CRRPNRVSPW EIELTSSASG SHLATPASKR LKPCLSHVNP EYMVPHGGGR PDFVESAQFR KVLQGQELLG YRTHDGTAVA TSRPCEARNS QYIDERSCSN DVGNSVLGIP RLGARTPYGN PGFPYHCSGF RESQRFQKVL QGQEVFHPYR GSLVDARIRS SGIHQQDGPY APGAANKWHS QLHGCAFRGP PAPVLPSQSA SSPPSVLMFQ QANSKVSRFE FGHGHLDMNE DDRHARFDST EGVGRSAQTL SLRPHLAAEV MDGHVAVENK SVGTNSCKIF GISLAEKVRA RDEMGCGDAN YPSSVQSLKQ QVPKSLGSSC ATACCWQGDR RPTMDMMN // ID I1HGF6_BRADI Unreviewed; 723 AA. AC I1HGF6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823758 {ECO:0000313|EnsemblPlants:BRADI2G16610.4}; GN ORFNames=BRADI_2g16610 {ECO:0000313|EMBL:KQK04890.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G16610.4, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK04890.1, ECO:0000313|EnsemblPlants:BRADI2G16610.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK04890.1, RC ECO:0000313|EnsemblPlants:BRADI2G16610.4}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G16610.4} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.4}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK04890.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK04890.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK04890.1; -; Genomic_DNA. DR EnsemblPlants; BRADI2G16610.4; BRADI2G16610.4; BRADI2G16610. DR Gramene; BRADI2G16610.4; BRADI2G16610.4; BRADI2G16610. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HGF6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 78749 MW; CAE8A60D19D9A0D0 CRC64; MAGIDLNTVE EDEEESAAAA AGTGGDCSSS LHSQGSSAAT ASASASATPP PPPPPRQQAW PPSAVCLELW HACAGPVAPM PRKGSVVVYF PQGHLEQLGG DAAAANAPVP PHVFCRVVDV SLHADASTDE VYAQLSLLPE NEEAVRRKRE GAEEGSGGED GETGKQRFSR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELAAKDL HGTEWKFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK TGSAFPGLYS QCSNLGTLAN VAHAVATKGM FRIYYNPRLS QSEFIVPYWK FTKSLSQPFS VGLRFKMRYE SEDAAERRYT GIITGTGDAD PMWRGSKWKC LLVRWDDDVE CRRPNRVSPW EIELTSSASG SHLATPASKR LKPCLSHVNP EYMVPHGGGR PDFVESAQFR KVLQGQELLG YRTHDGTAVA TSRPCEARNS QYIDERSCSN DVGNSVLGIP RLGARTPYGN PGFPYHCSGF RESQRFQKVL QGQEVFHPYR GSLVDARIRS SGIHQQDGPY APGAANKWHS QLHGCAFRGP PAPVLPSQSA SSPPSVLMFQ QANSKVSRFE FGHGHLDMNE DDRHARFDST EGVGRSAQTL SLRPHLAAEV MDGHVAVENK SVGTNSCKIF GISLAEKVRA RDEMGCGDAN YPSSVQSLKQ QVPKSLGSSC ATGDRRPTMD MMN // ID I1HGF7_BRADI Unreviewed; 719 AA. AC I1HGF7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823758 {ECO:0000313|EnsemblPlants:BRADI2G16610.5}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G16610.5, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G16610.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.5}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G16610.5} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.5}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G16610.5; BRADI2G16610.5; BRADI2G16610. DR Gramene; BRADI2G16610.5; BRADI2G16610.5; BRADI2G16610. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HGF7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 719 AA; 78525 MW; 1A4DE137444413BE CRC64; MAGIDLNTVE EDEEESAAAA AGTGGDCSSS LHSQGSSAAT ASASASATPP PPPPPRQQAW PPSAVCLELW HACAGPVAPM PRKGSVVVYF PQGHLEQLGG DAAAANAPVP PHVFCRVVDV SLHADASTDE VYAQLSLLPE NEEAVRRKRE GAEEGSGGED GETGKQRFSR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELAAKDL HGTEWKFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK TGSAFPGLYS QCSNLGTLAN VAHAVATKGM FRIYYNPRLS QSEFIVPYWK FTKSLSQPFS VGLRFKMRYE SEDAAERRYT GIITGTGDAD PMWRGSKWKC LLVRWDDDVE CRRPNRVSPW EIELTSSASG SHLATPASKR LKPCLSHVNP EYMVPHGGGR PDFVESAQFR KVLQGQELLG YRTHDGTAVA TSRPCEARNS QYIDERSCSN DVGNSVLGIP RLGARTPYGN PGFPYHCSGF RESQRFQKVL QGQEVFHPYR GSLVDARIRS SGIHQQDGPY APGAANKWHS QLHGCAFRGP PAPVLPSQSA SSPPSVLMFQ QANSKVSRFE FGHGHLDMNE DDRHARFDST EGVGRSAQTL SLRPHLAAEV MDGHVAVENK SVGTNSCKIF GISLAEKVRA RDEMGCGDAN YPSSVQSLKQ QVHEQRPVVG RAIDVQQWI // ID I1HGF8_BRADI Unreviewed; 723 AA. AC I1HGF8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823758 {ECO:0000313|EnsemblPlants:BRADI2G16610.7}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G16610.7, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G16610.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.7}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G16610.7} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G16610.7}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G16610.7; BRADI2G16610.7; BRADI2G16610. DR Gramene; BRADI2G16610.7; BRADI2G16610.7; BRADI2G16610. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HGF8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 175 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 175 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 78598 MW; 31FC0B36F281C4C1 CRC64; MAGIDLNTVE EDEEESAAAA AGTGGDCSSS LHSQGSSAAT ASASASATPP PPPPPRQQAW PPSAVCLELW HACAGPVAPM PRKGSVVVYF PQGHLEQLGG DAAAANAPVP PHVFCRVVDV SLHADASTDE VYAQLSLLPE NEEAVRRKRE GAEEGSGGED GETGKQRFSR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELAAKDL HGTEWKFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK TGSAFPGLYS QCSNLGTLAN VAHAVATKGM FRIYYNPRLS QSEFIVPYWK FTKSLSQPFS VGLRFKMRYE SEDAAERRYT GIITGTGDAD PMWRGSKWKC LLVRWDDDVE CRRPNRVSPW EIELTSSASG SHLATPASKR LKPCLSHVNP EYMVPHGGGR PDFVESAQFR KVLQGQELLG YRTHDGTAVA TSRPCEARNS QYIDERSCSN DVGNSVLGIP RLGARTPYGN PGFPYHCSGF RESQRFQKVL QGQEVFHPYR GSLVDARIRS SGIHQQDGPY APGAANKWHS QLHGCAFRGP PAPVLPSQSA SSPPSVLMFQ QANSKVSRFE FGHGHLDMNE DDRHARFDST EGVGRSAQTL SLRPHLAAEV MDGHVAVENK SVGTNSCKIF GISLAEKVRA RDEMGCGDAN YPSSVQSLKQ QVPKSLGSSC ATVSTSWFAN SCA // ID I1HGT6_BRADI Unreviewed; 408 AA. AC I1HGT6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK05045.1, ECO:0000313|EnsemblPlants:BRADI2G17610.1}; GN Name=LOC100824064 {ECO:0000313|EnsemblPlants:BRADI2G17610.1}; GN ORFNames=BRADI_2g17610 {ECO:0000313|EMBL:KQK05045.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G17610.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK05045.1, ECO:0000313|EnsemblPlants:BRADI2G17610.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK05045.1, RC ECO:0000313|EnsemblPlants:BRADI2G17610.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G17610.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G17610.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK05045.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK05045.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK05045.1; -; Genomic_DNA. DR RefSeq; XP_003565959.1; XM_003565911.3. DR EnsemblPlants; BRADI2G17610.1; BRADI2G17610.1; BRADI2G17610. DR GeneID; 100824064; -. DR Gramene; BRADI2G17610.1; BRADI2G17610.1; BRADI2G17610. DR KEGG; bdi:100824064; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; I1HGT6; -. DR KO; K09287; -. DR OMA; KHTYLDE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 146 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 216 337 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 146 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 216 337 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 43720 MW; 601EEDB2781852E7 CRC64; MDSTTSCLLD ESSSGGSASM ATPTGKIKSP PSSPSPAPTK MTPLHRVGSG AATSAVMDVD ASATAEEEAD SAAGRRIAMA AAVNNKLPSS RYKGVVPQPN GRWGAQIYER HSRVWLGTFT GEAEAARAYD AAAQRFRGRD AVTNFRALPS DAAELRFLAS RSKGEVVDML RKHTYLDELA LFTSSSSPPA PPDFSPSSSS PAPAAARQVR DREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQQLGSS SGAVFSGSGS GESNKGMLLN FEDGAGKAWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLCAG DAVGFYRSAS ANGNGNGSQQ QLFIDCKLRT KADTRSSSPR PGAVVRSVRL FGVDLLAAAP ELETKTSICK RSRNHSEASP DHPTHAVFKR RCIDFALT // ID I1HHM8_BRADI Unreviewed; 709 AA. AC I1HHM8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100834193 {ECO:0000313|EnsemblPlants:BRADI2G19867.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G19867.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G19867.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G19867.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G19867.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G19867.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI2G19867.1; -. DR EnsemblPlants; BRADI2G19867.1; BRADI2G19867.1; BRADI2G19867. DR Gramene; BRADI2G19867.1; BRADI2G19867.1; BRADI2G19867. DR eggNOG; ENOG410JSIU; Eukaryota. DR eggNOG; ENOG41108RS; LUCA. DR InParanoid; I1HHM8; -. DR OMA; HICFNPR; -. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 167 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 77044 MW; D19CFECFBCB217D3 CRC64; MGIDLNTVEE DGDAAAASAA AGVCGELWHA CAGPGVSLPR QGSALVYLPQ GHLASGGGGG GEVAGAAPPV PPHVACRVLD VELCVSGVSG DSRFGFALRS ENEADAATDE VYARLALVAV CESLELFSKK ELLSNKMSRQ NLGGTAWGEE DMEFGSGEKK PRMPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYEQ VRPSQELIAK DLHGTQWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGCDGE LRLGIRRAVQ LRNEDLFKAV NSSDSRQRTL SAVASSFRNR STFHVCFDPR SGASEFIVPY WKFSKSLNHP LSIGMRFKLS YESEDANERS TGMISGVSEV DPIRWPGSKW RCLLVRWDGN TDCNHQHRIS PWEIERVGGM NSVTHSLSAS NSKRTKLSFP ESNLDAPVID GNGYPDSMEI KKFRRVLQGQ ELMGSKTRGV ACSQSPDVAN IRTSDNRWFS NVQEQASEFT YQHLGFGESV GFPEVLQGQE MSQAVPFFKG TTFDTRATNG RVGSFSHVRQ SAAPTGLPAE AQGYSLPQFA LSSAAKVSSP SSVLMFNQAT VPQLELEGRT HHHGAYLSQC SPLEMASKTD AWLRVQRPVP RETGGHRFDI GRASTPANSG LATRDSGRSN CRLFGFSLTE KILGAGEDVK GGNSNEEADR ADPRLLELFG HSHPSPSALH ALVAAPLGM // ID I1HIC9_BRADI Unreviewed; 274 AA. AC I1HIC9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK05722.1, ECO:0000313|EnsemblPlants:BRADI2G22130.1}; GN Name=LOC100845795 {ECO:0000313|EnsemblPlants:BRADI2G22130.1}; GN ORFNames=BRADI_2g22130 {ECO:0000313|EMBL:KQK05722.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G22130.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK05722.1, ECO:0000313|EnsemblPlants:BRADI2G22130.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK05722.1, RC ECO:0000313|EnsemblPlants:BRADI2G22130.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G22130.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G22130.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK05722.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK05722.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK05722.1; -; Genomic_DNA. DR RefSeq; XP_003568233.1; XM_003568185.3. DR EnsemblPlants; BRADI2G22130.1; BRADI2G22130.1; BRADI2G22130. DR GeneID; 100845795; -. DR Gramene; BRADI2G22130.1; BRADI2G22130.1; BRADI2G22130. DR KEGG; bdi:100845795; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR InParanoid; I1HIC9; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HIC9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31318 MW; 8B365C2487D30E71 CRC64; MATEASSAAA GTAYEEERRK RILENLKHLE DLGIAKMSKS LIQAARAQNK STRASPKSRK KFEATTEVRR SSRTRTSVSY KDDFPEVDHF VRRRRASRSA ENGRGYTGRI SSYQQQQRAF KRAEKLQDSL DPDNPSFVKT MVRSHVSSCF WLGLPTRFCK DHLPPREFKM VLEDEEGVEF DTVYIGNRTG LSGGWRGFSM HHNLEDGDSL VFELVEPDRF KIYIIKAIDE DANEAKSSRD STEEEPDQKD SPVSEAPSSP EPLKGAKRRK LRRR // ID I1HID0_BRADI Unreviewed; 205 AA. AC I1HID0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G22130.2}; GN Name=LOC100845795 {ECO:0000313|EnsemblPlants:BRADI2G22130.2}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G22130.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G22130.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G22130.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G22130.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G22130.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G22130.2; BRADI2G22130.2; BRADI2G22130. DR Gramene; BRADI2G22130.2; BRADI2G22130.2; BRADI2G22130. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HID0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 205 AA; 23679 MW; 727EA478773644EC CRC64; MRCANTVMED VCYEFPEVDH FVRRRRASRS AENGRGYTGR ISSYQQQQRA FKRAEKLQDS LDPDNPSFVK TMVRSHVSSC FWLGLPTRFC KDHLPPREFK MVLEDEEGVE FDTVYIGNRT GLSGGWRGFS MHHNLEDGDS LVFELVEPDR FKIYIIKAID EDANEAKSSR DSTEEEPDQK DSPVSEAPSS PEPLKGAKRR KLRRR // ID I1HMC4_BRADI Unreviewed; 675 AA. AC I1HMC4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK07742.1, ECO:0000313|EnsemblPlants:BRADI2G37387.1}; GN ORFNames=BRADI_2g37387 {ECO:0000313|EMBL:KQK07742.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G37387.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK07742.1, ECO:0000313|EnsemblPlants:BRADI2G37387.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK07742.1, RC ECO:0000313|EnsemblPlants:BRADI2G37387.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G37387.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G37387.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK07742.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK07742.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK07742.1; -; Genomic_DNA. DR RefSeq; XP_010231769.1; XM_010233467.2. DR EnsemblPlants; BRADI2G37387.1; BRADI2G37387.1; BRADI2G37387. DR GeneID; 100837372; -. DR Gramene; BRADI2G37387.1; BRADI2G37387.1; BRADI2G37387. DR eggNOG; ENOG410JV4W; Eukaryota. DR eggNOG; ENOG411068A; LUCA. DR InParanoid; I1HMC4; -. DR OMA; CIFVPEK; -. DR OrthoDB; EOG093601YU; -. DR Proteomes; UP000008810; Chromosome 2. DR ExpressionAtlas; I1HMC4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 545 645 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 545 645 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 675 AA; 75320 MW; B2C3B9652ACB9FD1 CRC64; MRGSRKGRRR PPGEWQRLRN ADEAAAASSL QAAAALASLH LPHPGPTATA SDCQDQELVG AEGARGKRKG KRKWGFKAGK GDAVDSGRLP PGHFAHRRST CRGGVGSIDE VLHGEVGIRS RFSAARVRDI MRSLTPRQQG YVAKYGFEHF SRIGEFSVHE PLAEWIMGKI NPPFSELRIN TDKTIVFNRP LVQKVLGVPA GGRPFVLHGQ KTEKIKQLRT LYLNNGLRAT IPHAVSLLKN NEDEESFVRT FLLILLAAVL TPTTGNTIDL DYLWAFEDMS AVQDLDWAGH ITEHLMEEVR KFQYKSREEK MTDFWVGGCL PLLMIAYMDH LDLPRGRIID REINYSVPRI CHVSKDDFQF TAIADLNRQH YKFATFGILP FRDRTPYNDN PIIEETEIAE DDLHIPSKDY VLSGQWELEA HEERIYELGQ GIQPEILAFA EASIDNSPPG RNGIGSNQGS KRFASCERGT SSHFRNTAKA DVTSPSSEES GEDSAQQYES SESDDHPTPP EADYGVIFRN CLSGAQIEKV NTLIQKIQPG TVVFVATMRK CDVQLPSPLL IVSKERALAA AARFPHESGT VTLEVPGKSE KWQPRFFVEK DACMLAGNWL DFVCDNQVQE EDICVFVPAK EEEKSKFMVH IISAEATRSR GVKRARPSHD SPVVVDEQTA NPSVI // ID I1HQ90_BRADI Unreviewed; 697 AA. AC I1HQ90; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100829904 {ECO:0000313|EnsemblPlants:BRADI2G46190.1}; GN ORFNames=BRADI_2g46190 {ECO:0000313|EMBL:KQK09126.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G46190.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK09126.1, ECO:0000313|EnsemblPlants:BRADI2G46190.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09126.1, RC ECO:0000313|EnsemblPlants:BRADI2G46190.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G46190.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G46190.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK09126.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09126.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK09126.1; -; Genomic_DNA. DR RefSeq; XP_003569536.1; XM_003569488.3. DR STRING; 15368.BRADI2G46190.1; -. DR EnsemblPlants; BRADI2G46190.1; BRADI2G46190.1; BRADI2G46190. DR GeneID; 100829904; -. DR Gramene; BRADI2G46190.1; BRADI2G46190.1; BRADI2G46190. DR KEGG; bdi:100829904; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; I1HQ90; -. DR KO; K14486; -. DR OMA; QSPRLYE; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 697 AA; 76548 MW; 8479C876253D01CB CRC64; MMGIDLNTVE EDEEEGGAAA EPARGAVCLE LWHACAGPVG PLPRKGSAVV YLPQGHLEHI GDAGSAAAKV PPHVFCRVVD VNLQADAATD EVYAQVTLAV DNEESKRRVR DGENEEARDG DGEDADAMKR LPRIPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS LPRPSQELVA KDLHGTEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGVRRVA QLKNVSPFPA PHNQDPGHSS LGNVAHALAV KSTFHVYYNP RLCQSEFIIP YWKFMRSVGQ PFSAGMRFKM RYENEDASER RSTGIIIGSR ESDPKSYGSK WKCLVVRWDD DIEGRRPNRV SPWDIELTGA VSGSHLSIHH SKRMKPCLPQ VNPDMLLPSG SVSSDFAESA RFHKVLQGQE LLGFKTHEGT VSASSQASEA RSFQYTDERS CSINMSNVAG VPRLGAGTPP GNHGFSYHCS GFGESQRFQK VLQGQEVFRP YRGGTLSDAV IRGSGFCQRD GNHASGATYK WLAPQGCDYH GPTPAMPQAS SPSSVLMFPQ ISSKIPSFEY VYRSLDKDEN ISLNPTQGMG RTNRTLPLWP HLVSGKVIDE CTGSEKLQTP DKGPEHEPNV CKIFGISLTQ KVQAGDEVDC GNGNYSSRHL SSKPQMPKSL RNSCATVHEQ RPAVGMVVDV SAVDMMI // ID I1HQL3_BRADI Unreviewed; 403 AA. AC I1HQL3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK09293.1, ECO:0000313|EnsemblPlants:BRADI2G47220.1}; GN Name=LOC100824693 {ECO:0000313|EnsemblPlants:BRADI2G47220.1}; GN ORFNames=BRADI_2g47220 {ECO:0000313|EMBL:KQK09293.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G47220.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK09293.1, ECO:0000313|EnsemblPlants:BRADI2G47220.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09293.1, RC ECO:0000313|EnsemblPlants:BRADI2G47220.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G47220.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G47220.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK09293.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09293.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK09293.1; -; Genomic_DNA. DR RefSeq; XP_003569603.1; XM_003569555.3. DR EnsemblPlants; BRADI2G47220.1; BRADI2G47220.1; BRADI2G47220. DR GeneID; 100824693; -. DR Gramene; BRADI2G47220.1; BRADI2G47220.1; BRADI2G47220. DR KEGG; bdi:100824693; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; I1HQL3; -. DR KO; K09287; -. DR OMA; WHRTTHA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 129 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 215 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 129 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 215 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 403 AA; 42579 MW; 22E549DAA961E7C4 CRC64; MDSSSCLADE TNSGGASTDK LKALVAAATA TAPLERMGSG ASAVLDAAEP GAEADSGRVV QQGAGVGGKL PSSKYKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR AYDVAAQRFR GRDAVTNFRP LSESSPDPAD AAELRFLASR SKAEVVDMLR KHTYFDELAQ SRRAFAAAAA SVPTIASRHN GQHSSPSPFP AAAAAAAAAA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPAAAA AGGGGESCKG LLLNFEDAGG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDVVGFY RSVAGAGEDS KLFIDCKLRP NSTNTAAAAV FTDLPVDQSA PVAKPVRLFG VDLTIQPAPE QGTAGCKRTT RDFVKPAGPQ VPFKKQCIKL ALV // ID I1HQW8_BRADI Unreviewed; 306 AA. AC I1HQW8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G48057.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G48057.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G48057.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G48057.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G48057.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G48057.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI2G48057.1; -. DR EnsemblPlants; BRADI2G48057.1; BRADI2G48057.1; BRADI2G48057. DR Gramene; BRADI2G48057.1; BRADI2G48057.1; BRADI2G48057. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; I1HQW8; -. DR OMA; SMDMANP; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 190 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 190 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34238 MW; 472311916FDD5377 CRC64; MDGVSSKRRS PSASSTSTSS GDVTSAARTQ RVTRKRRSGG RGPRRGGLRR PPAHRPVSAS EFTVNEMDLN RAVFDPDHQV LAGLHVILQK ELRNSDISQL GRIILPKKEA EAYLPILTSK DGKSLCMHDL LNAQLWTFKY RYWPNNKSRM YVLENTGDYV RAHNLQVGDF IMIYKDDNNN RFVIRAKKAG DDLAATVPQI DEHISVMLPK PEVDDYMSLI SPQADISAFM PQADENYEIF DGILNSLPEI PAANVRYSDF FNPFDDSMDM SNPGLNANNS VNLMTHFHDD KAGLSLFPNP KSGPLI // ID I1HR35_BRADI Unreviewed; 407 AA. AC I1HR35; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G48580.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G48580.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G48580.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G48580.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G48580.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G48580.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G48580.1; BRADI2G48580.1; BRADI2G48580. DR Gramene; BRADI2G48580.1; BRADI2G48580.1; BRADI2G48580. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR InParanoid; I1HR35; -. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 303 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 303 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 407 AA; 45073 MW; ED27C3D51D003F31 CRC64; MPDAEGQSPW ATGGRRPHFF KVLIGDFQKR LKIPPNFCKH IPWEASTKAK KSLKEASSSM AATLEGPSGR TWPVVIRRTA AEGTFFASGW TKFVQDQALR ELDFLVFRHD GGTRFAAMVF DKTACEREDL LRLGEDGPRK KRGRPRKASS RDDTVGKELV PYCGAPGDRQ PQVACPNSTV ELADDKFASV PSFSPESPEL QTGVAGSAGQ SIAAKTEADT DAHALPLRSN AGPSQKRHGP DADQDGCPAK TRSIQDDLAV AAGIPPSVRR YNGYVSRRRP VTCAERQRAT EIARSFRSSL PHCVIRMSTM HVYYSFMMRF PTGFSRQHLP RERAEMALRD PDGKAWAVLY IPNTRDRLSR GWCAFARGNC LEEGDCCVFE LVGAAEFRVH IFRVVEPPVP AVRLRIA // ID I1HR37_BRADI Unreviewed; 722 AA. AC I1HR37; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G48597.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G48597.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G48597.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G48597.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G48597.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G48597.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G48597.1; BRADI2G48597.1; BRADI2G48597. DR Gramene; BRADI2G48597.1; BRADI2G48597.1; BRADI2G48597. DR eggNOG; ENOG410JVSD; Eukaryota. DR eggNOG; ENOG41105MW; LUCA. DR InParanoid; I1HR37; -. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 621 655 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 722 AA; 82911 MW; 3A696B647259EB21 CRC64; MEEEGKGRHR FFKVLVGDFA RRLEIPRDFL CHIPDVGGRR SDTSVASSAQ VMLKHSKWKT WPVELEKVDR RVFMTTGWSR FVEDNSLREY EFLLFRYDMD LHFMVSVFGR NACEKAIRYS GSGAQATGNL EAKLRSDICP SNRRGHSADK LTEIANGLMH SHSLVKTPDQ FDTEGFADLH LHEVGGSKDE LRTCLLLKGP MEDDKAKTMT EVMRRLHLDK VTIELFCAIL CLYKWNVDAA AEDFDICRGK PQTQNQFLKK KLVLQFDFIK IQLRRFFPLE DDCSTQICDS RNSSLDEPNL LSEPLQCDQS AVKRKLVDDH VLCDLSCKQK RRIGKSRTQQ TSETPRRSPR LARLNISHDS IESLLKERPE VLESSPTSTI DRVEDRAGQA RLLNKKPGSV LQGDCSFPQD CKRLKSARGD MVPSEEPAHS EETFEEQINR NALETSESLI RTGVMESSPP TNSKVSAPLK MNELYLTWKP SLHANPIEKI LLDIQRDNFL KTISHVQEIV RSHPSDLLCA DVIETVVKKE ILKWDSCLED MDAKRIVIAF LEHAKKIKEI HNFNMKIRKE EFSEKLRDQF KWQLNELESG YTNLELDYKK ATSDSNIAVS TLEELKKRLQ LHTLLDEIKD MQQSLTTKED EMQKLVHQVA EHESLVQKSL MERVRVKTVL KNYEQILVGL KNRLASAELG VIDVEALVTV EMDNMSKEIE ISKGSLLHIN FK // ID I1HRN4_BRADI Unreviewed; 657 AA. AC I1HRN4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100843055 {ECO:0000313|EnsemblPlants:BRADI2G50120.1}; GN ORFNames=BRADI_2g50120 {ECO:0000313|EMBL:KQK09770.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G50120.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK09770.1, ECO:0000313|EnsemblPlants:BRADI2G50120.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09770.1, RC ECO:0000313|EnsemblPlants:BRADI2G50120.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G50120.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G50120.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK09770.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK09770.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK09770.1; -; Genomic_DNA. DR RefSeq; XP_003569835.1; XM_003569787.3. DR STRING; 15368.BRADI2G50120.1; -. DR EnsemblPlants; BRADI2G50120.1; BRADI2G50120.1; BRADI2G50120. DR GeneID; 100843055; -. DR Gramene; BRADI2G50120.1; BRADI2G50120.1; BRADI2G50120. DR KEGG; bdi:100843055; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; I1HRN4; -. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 657 AA; 71095 MW; 2C9C6F25308C9EAA CRC64; MGIDLNAADD NRDARAPPPS PTAVCRELWH ACAGPIVALP RRGSKVVYLP QAHLAAAGCG GDVAVALPPH VACRVVDVEL CADPSTDEVY ARLALMAEGE VFERNMEGGR NEGEDDTEDG DGERKSRMLQ MFCKTLTASD TSTHGGFSVP RRAAEDCFSP LDYQQIRPSQ ELVAKDLHGA KWRFRHIYRG QPRRHLLTTG WSSFVNKKKL VSGDAVLFLR GDDGELKLGV RRAIQLKNES LFKAFSSNSS KMNALSAVAN SLKHRSVFHI CYNPRDAASE FIVPYWKFLK SLNHPFCIGM RFKIQYGSED VNERRSGMIT GVTEVDPIRW PGSNWRSLLV RWEDGTDCNS QNRLSPWEIE IVGGSVSIAQ SLPASSSKRT KLCSQSNLDV PTLYGNGCPD SMGTDKLPRV LQGQELMGSG THRVTCSPQQ AGVTEFKCSD GMGFITNTRS CMLSGPTSRL PARNSGFSYQ SVGFGESVGF PEVLQGQEIS QTVPLFQGTV SDTCSAKGRY GLHNMRTSYA VSGGLSSAIQ GRSLSLSTQP PAEMASPLPT VVPQLGLSSK NKDGDANGSQ PEPFGIVKAS TPGDAVKIGP DGRKVARSSC MLFGFSLTEK ILPTEEDCVK EGNHETDCQN PRMLDLFGYG HATPGALHAL CAAPLGI // ID I1HUC8_BRADI Unreviewed; 589 AA. AC I1HUC8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G58030.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G58030.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G58030.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G58030.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G58030.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G58030.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010232708.2; XM_010234406.2. DR STRING; 15368.BRADI2G58030.1; -. DR EnsemblPlants; BRADI2G58030.1; BRADI2G58030.1; BRADI2G58030. DR GeneID; 104582923; -. DR Gramene; BRADI2G58030.1; BRADI2G58030.1; BRADI2G58030. DR KEGG; bdi:104582923; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; I1HUC8; -. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 524 584 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 86 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 524 584 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 589 AA; 65535 MW; 75D8BAA261C67F82 CRC64; MLEMVGVKKE QDESQDDDEE VGAKMISRQE KITSQKGEEK KKRKMASDPH RKRACVDCTK RCARVHGRSA SPDPENARRP AAMPTLPSFF KVMMGYFSET MVIPPPFAKT IKDLKGSNVY LEDAFGLRWR VRVCSDDGLL SFGHGWKNFV LDHAIGAGEF LVFRQIARTV FAVQIFARSA CERLYFCEKN QRQSRKRKKA REKTGKEMVK VSQDNGDRRS GKKQRSSYNQ QDDLGTVTLL DAETETAADC TILHSGGGTE TEDRGGSNFP TSPELATPLA TMDINDEITD DIFLTADVYE FETDFCDPEA FSVEVGLEEH VAHGHNSGFS CGAEMSSRNC DSSVGVCLEN REMADVPVTS TAGNDPVLGI GMDINELSVI RGEKSYSEID AEMPSSECAI DTCKRFGENL LLPPDGNQIQ VQRKEEGSSE KQDSNLQLQE CPGQIAGEVI PANPKPRERP GRRQKNHMQS VAGNNPEDLK TRRPKASDRK FVVAVPPPDQ TWLDLPCRLP AVVPRAKKQG RKVLVLEDPR ARRWPVLYQC TPRFSGFIAG WVDVCRENGL REGDACELEL RGNSELELRV RPPGSSTGP // ID I1HUG6_BRADI Unreviewed; 698 AA. AC I1HUG6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK11143.1, ECO:0000313|EnsemblPlants:BRADI2G58390.1}; GN ORFNames=BRADI_2g58390 {ECO:0000313|EMBL:KQK11143.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G58390.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK11143.1, ECO:0000313|EnsemblPlants:BRADI2G58390.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK11143.1, RC ECO:0000313|EnsemblPlants:BRADI2G58390.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G58390.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G58390.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK11143.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK11143.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000881; KQK11143.1; -; Genomic_DNA. DR RefSeq; XP_010232723.1; XM_010234421.2. DR STRING; 15368.BRADI2G58390.1; -. DR EnsemblPlants; BRADI2G58390.1; BRADI2G58390.1; BRADI2G58390. DR GeneID; 100840416; -. DR Gramene; BRADI2G58390.1; BRADI2G58390.1; BRADI2G58390. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; I1HUG6; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 540 641 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 540 641 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 74131 MW; 7B09C962D570CF02 CRC64; MDASAGSPPP PHSQQKHGGG AWPGKAPAGE IPPGEDDFLF ADDTFPSLPD FPCLSSPSSS TFSSSSSSNS SSAFTAAATR GGGEQHAAAE DGIDALADLD QLLDFASLSV PSWEDEPLFP DDVGMMLEDA DAMSDDHKPP ARHAADAGCR AAGKAAAAAS GGGEGFVASG GGAAEDLPRF FMEWLTNNRD CISAEDLRSI RLKRSTIEAA AARLGGGRQG TMQLLKLILT WVQNHHLQKK RLRVDASMEM DASPAGPHGS HHHHHQLPSP GANPGYEFPA AAPEGTSWTM PYQQAAFTPP SAYGGETQTA IYPNTTSTTT AATGPYPFQQ SCSTSSVVVS SQPFSPPAAA TDMQTAPMSG SAGSGNNSVP LVWPQQYAFP GGAPTGNSYP MLQPFAPGFA MPMCPQRAAG GTEPSATKEA RKRRMARQRR LSSSLQHQRS QQLNLGQIQI VPQPPQEHSA PVTLTPPPSG AWGLWSSPPG CQQVPVQAQA QNPPSKPSSS SKPKQQKPSA PDAGATPAAS EKRQGANNKP AADKNLRFLL QKVLKQSDVG SLGRIVLPKK EAETHLPELK TRDGISIPME DIGTSRVWNM RYRFWPNNKS RMYLLENTGD FVRSNELQEG DFIVIYSDVK GRYLIRGVKV RPVQDQAGKH KYGIPGNKGG ASDVKTGPED RGCKEKSPHG AQRSRQEATG SNMMAVRI // ID I1HUT4_BRADI Unreviewed; 809 AA. AC I1HUT4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100834181 {ECO:0000313|EnsemblPlants:BRADI2G59480.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G59480.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G59480.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G59480.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G59480.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G59480.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G59480.1; BRADI2G59480.1; BRADI2G59480. DR Gramene; BRADI2G59480.1; BRADI2G59480.1; BRADI2G59480. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; I1HUT4; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 688 781 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 809 AA; 90200 MW; 315B10C33B58A03B CRC64; MAPPPQGPSA GDPLFNELWH ACAGPLVTVP RVGDLVFYFP QGHIEQVEAS MNQVADNQMR LYDLPSKLLC SVINVELKAE ADTDEVYAQV MLIPENDQNE MAVEKSSSKA ATTLAKPAVR SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMTQSPPTQ ELVAKDLHGM DWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GESGELRVGV RRAMRQLSNV PSSVISSHSM HLGVLATAWH AINTKSMFTV YYKPRTSPSE FIIPYDQYME SVKNNYSIGV RFRMRFEGEE APEQRFTGTI IGSENLDPLW PESSWRSLKV RWDEPSTIPR PDRVSPWKIE PASSPPVNPL PLSRVKRPRP NVPPASPESS ALTKEGATKV DVDSAQAQRN QTSMVLQGQE PMTLRSNNLT DSNDSDATVQ KPMMWSPSPN IGKSRPLTFQ QRPSMDNWMQ LGRRETDYKD ASSGAQSFGD SPGFFVQTYD EAPNHLASFK NQFQDQGPAR HFSEPYFFMH QQPNLTVDSS TKMHPETNEL HFWNGQNTVY GHSGDQSQGF RFEEHPSNWS SQQFSRVEQP RVIRPHASIA PVDLEKTREG SGFKIFGFKV DTASAPTNHL SSPMAATHEP ALQTQPSASL NQLQHAQTDC FPEVSVSTGG TNENEKSIQQ APQSSKDVQS KSHGASTRSC TKVHKQGVAL GRSVDLSKFS DYDELKAELD KMFEFDGELM SSNKNWQIVY TDNEDDMMLV GDDPWGEFCS IVRKICIYTK EEVQKMNSKL SAPRKEDGAA PCDGANENAA LPAPGNLDN // ID I1HV51_BRADI Unreviewed; 613 AA. AC I1HV51; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G60554.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI2G60554.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI2G60554.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI2G60554.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI2G60554.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI2G60554.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI2G60554.1; BRADI2G60554.1; BRADI2G60554. DR Gramene; BRADI2G60554.1; BRADI2G60554.1; BRADI2G60554. DR InParanoid; I1HV51; -. DR OMA; CASTKMA; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000008810; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 546 611 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 546 611 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 613 AA; 68557 MW; 6AB68AC654CD6933 CRC64; MASPSDYECG CARDIKDAVR ESRAPAHAAG ELVFLQATTT SADSRPTSRL QAPRFPLLKV IPEWVINHFG RNIVGSIKLE APNGNIYDVG VTVKMNTTFL QSGWRAFVDA NQIEENFCLM FRYRGTSRFE VTIFDSNGKE KVPCRDSMGS DSASQSSAGE GSDSTAYSSK ELPEEQLTKL HALVGKIKPE IPVLVVLMKK SNVNHNFTLI IRKDYAREYF PPKNTTIILQ LPGKSKHWNC KFYILPSGES KAGRCDLSIG NFVRDNHVRK GDIFLLQPIT KVKGHIFTVT VHPLHKASID HSPDGSTDIG LNHGCASTKM ASTASVKEEP IIDESTKTAL TPRVKEEPTI DGTGVRHISN HIFSIHCPCQ IHMSHFSSHL LCLIHVKSCP GEEISFWGHA EHGSSDSSEE DSQPRILLNH GCASTKMALT ARVKEERTID GEEISSSGHG EHVFSDNSNE TSEARFMPLD TSCLLRAQEK KMMEKIEAIK SELPIYWKVM NKSDVCVHKR GSPSPVFSSQ YISRYLAEKY ATGLTGVRGR RGAISLLLER DGRKRRTWSC QLRRSIDRTR IAKGWPSFAR DNHLQAGDLC LFEVLRNEEQ LKMVVYIIRR EEC // ID I1HX19_BRADI Unreviewed; 1141 AA. AC I1HX19; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100842244 {ECO:0000313|EnsemblPlants:BRADI3G03407.1}; GN ORFNames=BRADI_3g03407 {ECO:0000313|EMBL:KQJ93247.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G03407.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ93247.1, ECO:0000313|EnsemblPlants:BRADI3G03407.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ93247.1, RC ECO:0000313|EnsemblPlants:BRADI3G03407.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G03407.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G03407.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ93247.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ93247.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000882; KQJ93247.1; -; Genomic_DNA. DR RefSeq; XP_003570905.1; XM_003570857.3. DR STRING; 15368.BRADI3G03407.1; -. DR EnsemblPlants; BRADI3G03407.1; BRADI3G03407.1; BRADI3G03407. DR GeneID; 100842244; -. DR Gramene; BRADI3G03407.1; BRADI3G03407.1; BRADI3G03407. DR KEGG; bdi:100842244; -. DR InParanoid; I1HX19; -. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1008 1092 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 596 623 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1141 AA; 127143 MW; B5B622E89D9D5CCC CRC64; MAQQTPAMSS ALAAAAAAAP CEGERKAATI NGELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD VEAQVPNYPN LPSKLICLLH SVILQADPDT DEVYAQMTLQ PVNTYAKEAL QLSELALRQA RPQMEFFCKT LTASDTSTHG GFSVPRRAAE KIFPSLDFSL QPPCQELQAR DIHDNIWTFR HIFRGQPKRH LLTTGWSLFV SGKKLFAGDS VIFVRDEKHQ LLLGIRRANR QPTNISSSVL SSDSMHIGVL AAAAHAAANS SPFTIFYNPR ASPTEFVIPF AKYQKAMYSN QISLGMRFRM TCETEELGTR RYMGTITGIS DLDPVRWKSS QWRSLQVGWD ESAAGERRNR VSIWEIEPLA APFFICPQPF FGVKRSRQLD DESSEMENLW KRAMPWLGEE VCIKDAQTQG ATIPGLSLVQ WMNMNRQQSS SLASTSMQSE YLRSASNPAM QNFGAADLAR QLYMQNHLLQ QNNIHLNSSK LHEQAKPVND LCKETLPLDQ LGAIRKQQDQ NQDGGSQQRQ QQSSNQVIPL SQAQTNIVQA QVILQNQMQQ QQQQQQQQPS PTQNQQGASV QQLLQSHQQQ DQNLQLQQQL LLQQQLKQQH QQQQQQQQQQ LNKLPGQLVN LASQQTKLSD QELHLQLMQK LQQHSLMSQS AVTLSRLPLI QDQQKFLVDM QQQLSNSDAL AQQVIPQQQE RRTSLQTTQV PPPMQQEQQQ QHKLSQKQVA PADVSEAAFT PISSSSVMSK TGNTKIISRT AQSALTEEMP SCSTSPSTAN GNHFAQPNIS RNEHCRISTE KVPHSTAQMF IPTSIEAVTP IITKELPKLN NNVIPSVTTS KLPNGVSGLQ NFMNNVVPTD NLETASSATS LWPSQTDGLL HQGFPSSNFN QHQMFKDALP DVEIQGVDPS SSALFEMNND GPLGFPIETE GLLGNALDSV KYQNYISTDD ENNYRMQKDA RQEISTSMVS QSFGQSDMAF NSIDSAINDG ALLNRNSWPP APPPQRMRTF TKVYKRGAVG RSIDIGKYSG YGELNQALAR MFGIEGQLED RQRIGWKLVY TDHEDDVLLL GDDPWEEFVN CVRCIRILSP QEVQQMSLDG DLGNTVLPNQ ACSSSDGGNA WRPRGDQNSR NPSIGPFDQF E // ID I1HXK7_BRADI Unreviewed; 921 AA. AC I1HXK7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100829021 {ECO:0000313|EnsemblPlants:BRADI3G04920.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G04920.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI3G04920.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI3G04920.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G04920.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G04920.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI3G04920.1; -. DR EnsemblPlants; BRADI3G04920.1; BRADI3G04920.1; BRADI3G04920. DR Gramene; BRADI3G04920.1; BRADI3G04920.1; BRADI3G04920. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1HXK7; -. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 789 873 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 921 AA; 102152 MW; 29981BF2E3870DA6 CRC64; MKLSPSAGGG LPDQPGSPED DFPFSVAEEH KCLNSELWHA CAGPLVSLPA VGSRVLYFPQ GHSEQVSAST NKEIESQIPN YPNLPPQLIC QLHNVIMHAD AETDEVCAQM TLQPLSPQEL KDPFLPAELG TANKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFISAKRLVA GDSVLFIWND NNQLLLGIRR ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLAKYVKAV YHTRISVGMR FRMLFETEES SVRRYMGTIT GISDLDPARW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTIPMYSS PFPMRLKRPW PTGLPSLYGG KEDDLTSSLM WLRDGANPGF QSFNFGGLGM NPWMQPRLDT SLLGLQPDMY QAISAAALQN PAKQVSPAVL QFQQPQNIAG RSLVSSQILQ QVQPQFQQMH HQNINDNTIQ GHNQSEYLQQ QLQRCQSFNG QKPQEQQQQE SHQQQQSQHQ HMQEQNHSPN FQSVPNALSV FSQLSPSTQS PPSIMQTVSA FSQQQNFQDT DINSLSPLNI SSMHDVLRPF PSEAGSNLQD VPRTTPVPVS DPWSSKRVVM ESVIPSRSHV TVSHIEQLDS APSNIPQSSS LAPLPGRESV VDQDENSDHQ NHLLFGVNID SQSLLMQDDI PGLQNENDCI ASLQDDNGSN TIPYSTCNFL SPSQNNFPLN EALTSSGCLD GSGYVPFSEN PDQVNRPPAT FVKVYKSGAV GRLLDITRFS SYHELRSELG HLFGLEGQLE DPVRSGWQLV FVDRENDVLL VGDDPWQEFV NSVSCIKILS PQEVQQMGKQ GIELLSSAPA RRLGNGCDNY VSRQESRNLS TGIAAVGSVE F // ID I1I079_BRADI Unreviewed; 349 AA. AC I1I079; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQJ94744.1, ECO:0000313|EnsemblPlants:BRADI3G12910.1}; GN Name=LOC100820925 {ECO:0000313|EnsemblPlants:BRADI3G12910.1}; GN ORFNames=BRADI_3g12910 {ECO:0000313|EMBL:KQJ94744.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G12910.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ94744.1, ECO:0000313|EnsemblPlants:BRADI3G12910.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ94744.1, RC ECO:0000313|EnsemblPlants:BRADI3G12910.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G12910.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G12910.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ94744.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ94744.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000882; KQJ94744.1; -; Genomic_DNA. DR RefSeq; XP_003573243.1; XM_003573195.3. DR STRING; 15368.BRADI3G12910.1; -. DR EnsemblPlants; BRADI3G12910.1; BRADI3G12910.1; BRADI3G12910. DR GeneID; 100820925; -. DR Gramene; BRADI3G12910.1; BRADI3G12910.1; BRADI3G12910. DR KEGG; bdi:100820925; -. DR eggNOG; ENOG410JDZ5; Eukaryota. DR eggNOG; ENOG41116M3; LUCA. DR InParanoid; I1I079; -. DR OMA; KFIIRGE; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 241 341 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 349 AA; 37996 MW; EC1769929693E323 CRC64; MGGGDGRHGD GGGGSHPHQF QYQALLAAVH TQNPNHNTLP FPLPPLNGNG PDAPANNAAR HPPAPRGFAD WSASNSAFTS LAAQSTPAAS TAASANNAYH YGVTPCYAFW THYMLNKSGY SYYPPQHQEH LHPFCPDSQQ AKNTGSALSF GVDSFTSTPV APNISLAPNS SAHMPPMEGR LSTREPETSE DVPRVVRRKA GMETRNGGED NCETVDTLPE LNQGHESCAT KLNSGEYEVI LRKELTKSDV ANVGRIVLPK KDAEAGLPQL CQRDPMILKM DDMVLPVTWK FKYRFWPNNK SRMYILDSTA EFVKTHGLQA GDALVIYKNP VPGKFIIRGE KAIQHPTNP // ID I1I1F3_BRADI Unreviewed; 214 AA. AC I1I1F3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G16500.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G16500.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI3G16500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI3G16500.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G16500.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G16500.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI3G16500.1; BRADI3G16500.1; BRADI3G16500. DR Gramene; BRADI3G16500.1; BRADI3G16500.1; BRADI3G16500. DR eggNOG; ENOG410JS8F; Eukaryota. DR eggNOG; ENOG41116NU; LUCA. DR InParanoid; I1I1F3; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 23583 MW; C888F604BBFB1026 CRC64; MEEATAQERS HEEEEEDDLV DVHYQQGEAV GEGELEHLFD KVVTPSDVGK LNRLVVPKQH AERHFPPMAA AGMTELCFED AAAGAAGRTA AWRFRYSYWG SSQSYVITRG WSRFVREKRL SAGDTISFTR SGGRYFIGYR HRQPCRRHDI VFGSDADAGP AQPRLFGRGT STMICHGEAV AESPPPRSFR LFGVNVECGT GAGEDDEEGG QGLG // ID I1I286_BRADI Unreviewed; 175 AA. AC I1I286; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G18807.1}; GN Name=LOC100822552 {ECO:0000313|EnsemblPlants:BRADI3G18807.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G18807.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI3G18807.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI3G18807.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G18807.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G18807.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI3G18807.1; BRADI3G18807.1; BRADI3G18807. DR Gramene; BRADI3G18807.1; BRADI3G18807.1; BRADI3G18807. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; I1I286; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 19431 MW; A5707DC688D6D70C CRC64; METPACPSKQ LPDVHVIKTI LEPCEDSPEP APAPAPALYP APDATEDWET TPLSGNHPFF TMLMSRSHVQ KPFQLGIPSR FRYHLPEACK ATTLICRGKS WPMSYRGDLK MKKLDVAWKD FAVDNRLQVN DACIFELVNG AGEEELVFQV QILRGGLPKE VVSKGATADE PMIIN // ID I1I4R9_BRADI Unreviewed; 686 AA. AC I1I4R9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100830217 {ECO:0000313|EnsemblPlants:BRADI3G28950.1}; GN ORFNames=BRADI_3g28950 {ECO:0000313|EMBL:KQJ97130.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G28950.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ97130.1, ECO:0000313|EnsemblPlants:BRADI3G28950.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ97130.1, RC ECO:0000313|EnsemblPlants:BRADI3G28950.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G28950.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G28950.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ97130.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ97130.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000882; KQJ97130.1; -; Genomic_DNA. DR RefSeq; XP_010234830.1; XM_010236528.2. DR STRING; 15368.BRADI3G28950.1; -. DR EnsemblPlants; BRADI3G28950.1; BRADI3G28950.1; BRADI3G28950. DR GeneID; 100830217; -. DR Gramene; BRADI3G28950.1; BRADI3G28950.1; BRADI3G28950. DR KEGG; bdi:100830217; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; I1I4R9; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 591 671 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 74768 MW; 6267F134DB40CF28 CRC64; MKEVGEERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANSGGGGA AAELAATVGP RLLPALVLCS VAGVRFLADP ETDEVFAKIR LVPVGPDEVA FREPEGLGPL EAEAQEKLAS FAKTLTQSDA NNGGGFSVPR YCAETIFPKL DYRADPPVQT VLAKDVHGEV WKFRHIYRGT PRRHLLTTGW STFVNQKKLV AGDSIVFLRT EHGELCVGIR RAKRVTCGGM ECVSGWNAPG YGGFSAFLKD EENKMMNSTG GYLKGRGKLK IADVVEAASL AANGQPFEVV YYPRASTPEF VVKAASMQAA MRIHWCPGMR FKMAFETEDS SRISWFMGTI SSVQVADPIR WPNSPWRLLQ VSWDEPDLLQ NVKCVSPWLV ELVSSIPPIH LGPFSPPRKK LRVPQHPDFP FDGHLFNPIF HGNPLGPSNS SLRCYPDNSP AGIQGARHAQ FGLPLTDHQL NKLHLGLFQG GGFNRLDALT PSSRIPKGCM ISSAPAHDSV SCLLTIGTPQ STEKSDDRKT PHIMLFGKAI LTEQQMTSSG SRDTLSSGAT ANSSPYGNAP KAGNTSDGSG SSICIGFSSQ GHESSDFGLE AGHCKVFMES EDVGRTIDLS DFVSYEELYG RLADMFGIEK EEIISHLRYR DTAGTVMHTG ELPFSDFMKV ARRLTIISGD SGRLPKPLIE CMAQRV // ID I1I5Q7_BRADI Unreviewed; 267 AA. AC I1I5Q7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQJ97599.1, ECO:0000313|EnsemblPlants:BRADI3G32140.1}; GN ORFNames=BRADI_3g32140 {ECO:0000313|EMBL:KQJ97599.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G32140.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ97599.1, ECO:0000313|EnsemblPlants:BRADI3G32140.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ97599.1, RC ECO:0000313|EnsemblPlants:BRADI3G32140.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G32140.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G32140.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ97599.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ97599.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000882; KQJ97599.1; -; Genomic_DNA. DR RefSeq; XP_014756192.1; XM_014900706.1. DR EnsemblPlants; BRADI3G32140.1; BRADI3G32140.1; BRADI3G32140. DR GeneID; 100830833; -. DR Gramene; BRADI3G32140.1; BRADI3G32140.1; BRADI3G32140. DR KEGG; bdi:100830833; -. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR InParanoid; I1I5Q7; -. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29172 MW; D585781D01BA41B0 CRC64; MEFLPAAAPA EDSEERQSRA ASAAEMEKEH MFEKVVTPSD VGKLNRLVIP KQHAERYFPL DFDKGNGGII LSFEERGGKA WRFRYSYWNS SQSYVMTKGW SRFVKDKRLL AGDAVLFARG VAHDSERGGH GHRRFFIDFR RRLRPVAAFP PAPAPPLPSV PLCRAWPWDG VSGGDRRRVL FLRQQVPTAA AAVLKSSSVV PAAAGALLEP ASRQKRVRLF GVNLDCPACP PAAAASTLLQ QKQLPSPSSS SSSSTAGKEA CSLDLGL // ID I1I8M4_BRADI Unreviewed; 1041 AA. AC I1I8M4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100830441 {ECO:0000313|EnsemblPlants:BRADI3G40437.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G40437.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI3G40437.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI3G40437.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G40437.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G40437.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI3G40437.1; BRADI3G40437.1; BRADI3G40437. DR Gramene; BRADI3G40437.1; BRADI3G40437.1; BRADI3G40437. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000008810; Chromosome 3. DR ExpressionAtlas; I1I8M4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 973 1041 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1041 AA; 115993 MW; 6FD717E07BB1EC08 CRC64; MMSAPESSCG GDEEAGMRRS KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHNVTMEADP DTDEVYARMT LQPVTQCDKE ILLASEIALK QSRPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPQLDF SLQPPAQELQ ARDLHDNTWT FRHIFRGQPK RHLLTTGWSL FISGKRLLAG DSVLFIRDGK HQLLLGIRRA NRQPTNLSSS VLSSDSMHIG VLAAAAHAAA NNSQFTIFYN PRASPSEFVI PFAKYQKAVY SNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK SSQWRSIQVA WDEAAPTERR TRVSLWEIEP VIAPFFIYPS PLFTAKRARQ PGMIDDETSE MDNLFKRTMP WLGEDICKKD LNSQNSIAPG LNLVQSLQWM NMQQNLSLAG TGMQPELLNS LASKHVQNLS AADISRQISF QPQFLQQNNI QFNTSLLPQQ NQQNEQLAKV IAPNQLGNIM VPQKVDQDRN SDQKQHVVTQ SLPGGQASIN ITRPQLVAQA QFQQPQVILQ AQVQQQQPLV QSHTVLHGGL QQIQLLPQQQ PHLQKQQQSQ HHQQVQHLVQ EQQHIKVQPL QVSSDVNMNM QLSDNQMKLQ LLKALQSQQH LTLEQQKMFF DLQQQMVNCQ SDPQQCTQGA TQTVGIHNTI QYTTQQNSQP HQPVQDSPGN SIPIAKTDII TSMGASSLST VGGMQSLKTH NGPSSSTSPC TNTNPVLLQS IPSSSKNQSS LTAAKTSQSS VMLGPTIEQE MKSYQSVKPT MIIPKMTEQR PTTGQDCLNN NPHIDYLDTS SSATSVCLSQ ADGSFQQNFP PSSLNQHQLL RDTVPDNEFE VTDPRNNLLF GVNIDGQLGL PLNADALLAT SIENDKFMDQ MAGNGISNYM SSKESQQEIS SSMISHSFGV ADMAFNSIDS AINDTPFLNR NSRAPAPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK HDIARMFGIE GQLGDQSRVG WKLVYEDHEK DVLLVGDDPW E // ID I1I8M5_BRADI Unreviewed; 1086 AA. AC I1I8M5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100830441 {ECO:0000313|EnsemblPlants:BRADI3G40437.2}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G40437.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI3G40437.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI3G40437.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G40437.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G40437.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI3G40437.2; -. DR EnsemblPlants; BRADI3G40437.2; BRADI3G40437.2; BRADI3G40437. DR Gramene; BRADI3G40437.2; BRADI3G40437.2; BRADI3G40437. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1I8M5; -. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000008810; Chromosome 3. DR ExpressionAtlas; I1I8M5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 973 1057 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1086 AA; 120959 MW; E558E2DE31B700C1 CRC64; MMSAPESSCG GDEEAGMRRS KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHNVTMEADP DTDEVYARMT LQPVTQCDKE ILLASEIALK QSRPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPQLDF SLQPPAQELQ ARDLHDNTWT FRHIFRGQPK RHLLTTGWSL FISGKRLLAG DSVLFIRDGK HQLLLGIRRA NRQPTNLSSS VLSSDSMHIG VLAAAAHAAA NNSQFTIFYN PRASPSEFVI PFAKYQKAVY SNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK SSQWRSIQVA WDEAAPTERR TRVSLWEIEP VIAPFFIYPS PLFTAKRARQ PGMIDDETSE MDNLFKRTMP WLGEDICKKD LNSQNSIAPG LNLVQSLQWM NMQQNLSLAG TGMQPELLNS LASKHVQNLS AADISRQISF QPQFLQQNNI QFNTSLLPQQ NQQNEQLAKV IAPNQLGNIM VPQKVDQDRN SDQKQHVVTQ SLPGGQASIN ITRPQLVAQA QFQQPQVILQ AQVQQQQPLV QSHTVLHGGL QQIQLLPQQQ PHLQKQQQSQ HHQQVQHLVQ EQQHIKVQPL QVSSDVNMNM QLSDNQMKLQ LLKALQSQQH LTLEQQKMFF DLQQQMVNCQ SDPQQCTQGA TQTVGIHNTI QYTTQQNSQP HQPVQDSPGN SIPIAKTDII TSMGASSLST VGGMQSLKTH NGPSSSTSPC TNTNPVLLQS IPSSSKNQSS LTAAKTSQSS VMLGPTIEQE MKSYQSVKPT MIIPKMTEQR PTTGQDCLNN NPHIDYLDTS SSATSVCLSQ ADGSFQQNFP PSSLNQHQLL RDTVPDNEFE VTDPRNNLLF GVNIDGQLGL PLNADALLAT SIENDKFMDQ MAGNGISNYM SSKESQQEIS SSMISHSFGV ADMAFNSIDS AINDTPFLNR NSRAPAPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK HDIARMFGIE GQLGDQSRVG WKLVYEDHEK DVLLVGDDPW EDFLNCVRCI RILSPQEEMQ MRLVGDIGDG FLPNQACSSS DGGQPW // ID I1IAJ3_BRADI Unreviewed; 811 AA. AC I1IAJ3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100842263 {ECO:0000313|EnsemblPlants:BRADI3G45880.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G45880.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI3G45880.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI3G45880.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G45880.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G45880.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI3G45880.1; -. DR EnsemblPlants; BRADI3G45880.1; BRADI3G45880.1; BRADI3G45880. DR Gramene; BRADI3G45880.1; BRADI3G45880.1; BRADI3G45880. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR InParanoid; I1IAJ3; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 17 {ECO:0000256|SAM:SignalP}. FT CHAIN 18 811 Auxin response factor. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5003643545. FT DOMAIN 261 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 680 762 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 261 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 91062 MW; DD8316D0FB7A6A37 CRC64; MAFVWWLLPI SGALVLSSRL LMQMLIQEIW HQQCLLSPVF AEAVCSNSLL VSWWWPAIRS SVAERLLLLA DSRENLQFRL PGRYVIYFLL NACEFRSVKW TNGYYYGPQI RFFHCRVTVK SLCVGSSPSY LYAFSHDEFS FIEIKCLCVG SSSDALYREL WHACAGPLVT VPRQGERVYY FPQGHMEQLE ASTDQQLDQH LPLFNLPSKI LCKVVNVELR AETDSDEVYA QIMLQPETDQ SEPSSADPEP HEPEKCNAHS FCKTLTASDT STHGGFSVLR RHAEECLPPL DMTQNPPWQE LVAKDLHANE WHFRHIFRGQ PRRHLLTTGW SVFVSSKRLV AGDAFIFLRG DNGDLRVGVR RLMRQLNNMP SSVISSHSMH LGVLATASHA ISTGTLFSVF YKPRTSRSEF VVSVNKYLEA KNNKMSVGMR FKMRFEGDEA PERRFSGTII GVGSMTTSPW ADSDWRSLKV QWDEPSAIPR PDRVSPWELE PLVATSIQPP QPPARNKRAR PPASPSIAPE HPPVFGLWKS PGESAQTFSF SGLQRTQELY PSSPNSIFSS SLNIGFKTKN EPSTLPNNQF YWPIRDTRAD SYSASIDKVP ASRKQEPTTA GCRLFGIEIG SAVEATSPVV DVSGACHEQP AASVDIESDQ LSQPSHVNKS DAPAASSDRS PYETQSRQVR SCTKVIMEGM AVGRAVDLTR LHGYEDLHQK LEEMFDIQGE LSASLKKWKL VYTDDEDDMM LVGDDPWSEF CSMVKKVYIY SYEEAKHLTP KAKLPVVVDA IKPSPSKPPL EPDMPQGGMG NNAQVTDNND C // ID I1IB86_BRADI Unreviewed; 927 AA. AC I1IB86; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK00185.1, ECO:0000313|EnsemblPlants:BRADI3G47847.2}; GN Name=LOC100833814 {ECO:0000313|EnsemblPlants:BRADI3G47847.2}; GN ORFNames=BRADI_3g47847 {ECO:0000313|EMBL:KQK00185.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G47847.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK00185.1, ECO:0000313|EnsemblPlants:BRADI3G47847.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK00185.1, RC ECO:0000313|EnsemblPlants:BRADI3G47847.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G47847.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G47847.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK00185.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK00185.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000882; KQK00185.1; -; Genomic_DNA. DR EMBL; CM000882; KQK00186.1; -; Genomic_DNA. DR RefSeq; XP_003575292.2; XM_003575244.3. DR RefSeq; XP_014755477.1; XM_014899991.1. DR EnsemblPlants; BRADI3G47847.1; BRADI3G47847.1; BRADI3G47847. DR EnsemblPlants; BRADI3G47847.2; BRADI3G47847.2; BRADI3G47847. DR GeneID; 100833814; -. DR Gramene; BRADI3G47847.1; BRADI3G47847.1; BRADI3G47847. DR Gramene; BRADI3G47847.2; BRADI3G47847.2; BRADI3G47847. DR KEGG; bdi:100833814; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 319 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 829 927 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 319 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 829 927 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 927 AA; 105180 MW; CC07E8994A0041FC CRC64; MSGGVPELAC RKRLRSCDVN VKKKEEGRKK MHSEEEEEEE RMEMNYMKVF AANSEKKRRE MPTNLSDEEE EEETWDTDKT AKKMVHSGHG KATDRKASMA TFEKVKKKKL VSSDGGEKKM QSGDRDRDKR KNMLFPFNKN KDPLKEKNWK MPSRHSSDKK MGSGDHHKDK MRNRPQPLEK SKHSEKEKMK ILSSHNGEKK NMWGHDHEKD KRGSTPLQCS KNEMKKRIMQ NTCDAKEKKT WPSDRMKKKK NASLVLSKEN KIQTLTNNKR KNTNLTVSNK EKKMRTDVKD NKEESDGRWK GHNEVPKVQS GDKEKKRNLP AFFKFIRNNF QEFLLLPPMI APKLKDLTNR RVYLKDSEGK SSKIRLSVVE GSLAFYQGWK EFISDHSIKS GDFLLFEYIG KSTFSGMSTF SVRVFGIDSC ERLSFNVERQ GGKKEQKESH APDDLVPCHG VRNSEDMNGH LYDSGEYLGS KGTKSKPNGY MNNHEIASCN LVFKSMNAAS GTSHMAADSK EDLSRAVSGF ECGPLVALDN KDGYLANGEN KAKNIYPIFS KGKSKHDVIE ITDEPPVAQE TEDAAKLTTL DTASEMHDVT AITKLRRNEI ISVNDAAPLA QEQADAVELK TFCCHIEDSS MKKESGLKVT TATKCPEMHD SDEGLRRKQE GNAVKLKCTT DLDNPNNGKM HIIGNVCNNY EAPGGSQCLE KSKKAIVSGH GDLDSSELIR PENRLKTEKK PVVNCSAIRL NPADESYLQP MAGTTFQLQT ERGQPEPDIN IVSRQRNNIP VRANHVVACQ SEHNFLRQGD MKSSSHVIPV PLLPVKSEVL ESDDHSRLKT GMQFCIPSTS QTWLELPNPL SNAVWQKQRQ NRSVIMLKDP MKRLWPVFYH ENSLFVGFTR GWESIVAANN LQTGDVCTLL KDLDEVEHVY HVEITRK // ID I1IBS5_BRADI Unreviewed; 694 AA. AC I1IBS5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100842577 {ECO:0000313|EnsemblPlants:BRADI3G49320.1}; GN ORFNames=BRADI_3g49320 {ECO:0000313|EMBL:KQK00423.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G49320.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQK00423.1, ECO:0000313|EnsemblPlants:BRADI3G49320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK00423.1, RC ECO:0000313|EnsemblPlants:BRADI3G49320.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G49320.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G49320.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK00423.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK00423.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000882; KQK00423.1; -; Genomic_DNA. DR STRING; 15368.BRADI3G49320.1; -. DR EnsemblPlants; BRADI3G49320.1; BRADI3G49320.1; BRADI3G49320. DR Gramene; BRADI3G49320.1; BRADI3G49320.1; BRADI3G49320. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR InParanoid; I1IBS5; -. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 688 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 74778 MW; 0113378580BF6EE7 CRC64; MITFGDLTDP APGGAERCVD RQLWLACAGG MCTVPPVGSS VYYFPQGHAE HALGLAAAGP GVGGLSRVPA LLPCRVAAVR YMADPDTDEV FAGIRLVPLR QDVQDDGAAA AGEDEEHEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVVAKDVHG ASWKFRHIYR GTPRRHLLTT GWSAFVNHKK LVAGDSIVFL RGDAGDLHVG IRRAKRGFCG AEEGSLPGWE NQQLYTMGPM RGGGNVSPSC KGGRRGKVRA EDVAEAARLA GSGQPFEVVY YPRASTPEFC VRAAAVRAAM RVQWCPGMRF KMAFETEDSS RISWFMGTVA GVQVADPIRW PQSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSSMPAIHL ASSFSPPRKK PRIPAYPEFP FEGQLLNPSF PLNLVAHGHH HYHHTQSYHP SFFPFPDGSA PPAGIQGARH AQFGPSLPDL HLTHLQSSLL NPGLRRHDHL TPALVQPRIS TDLTIGSSPA RKNGVSSTLP DDGAKKPKPS SGLVLFGQTI LTEQQMSRSD SAGATSPAAS GNSSLNCDTE KAGNVSEGSG SGVIQNASPE RLRWFGDGNS VSELGLEPGQ CKVFIESETV GRNLDLSAMS SFEELYGRLS ELFCIESAEL RSRVLYRGAT GQVKHAGDES FSNFIKSARR LTILADAGSD NIGS // ID I1ICN3_BRADI Unreviewed; 412 AA. AC I1ICN3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 12-APR-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G51840.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI3G51840.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI3G51840.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI3G51840.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI3G51840.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI3G51840.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI3G51840.1; BRADI3G51840.1; BRADI3G51840. DR Gramene; BRADI3G51840.1; BRADI3G51840.1; BRADI3G51840. DR InParanoid; I1ICN3; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008810; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 155 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 412 AA; 43463 MW; 4853DE2DBCA3D6BE CRC64; MEFTATSSSS RFSKGDAEDA EQEEPSRREI PFMTAAASSS AAASASVSAS GGSSPPFRSG DGGAGASGSG GGGGGDAEAA EAVEKEHMFD KVVTPSDVGK LNRLVIPKQY AEKYFPLDSA ANEKGPAAQL RGQRGQAVAL PLLYWNSSQS YVMTKAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI LLTRLMEMMM MRIAWVYSRL GVAGSNGRSG FFLPPSPPAT LYEHRLRQGF DFRGGMNPAM GLGIRQPQLL LFGSATSRMP PHHAHAPPLL LPRAPPLHHY TLQQSTAAGP SSVVLDSVPV IESPTTTATK KRVRLFGVNL DNPHSSGNGA GGDGESSNNH GGRTLSSSLQ MPASAAWRPR DPTLRLLEFP SHGAESSPGQ SSPSSSSSSK RDARSSALDL DL // ID I1IG05_BRADI Unreviewed; 301 AA. AC I1IG05; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQJ85582.1, ECO:0000313|EnsemblPlants:BRADI4G00380.1}; GN ORFNames=BRADI_4g00380 {ECO:0000313|EMBL:KQJ85582.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G00380.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ85582.1, ECO:0000313|EnsemblPlants:BRADI4G00380.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85582.1, RC ECO:0000313|EnsemblPlants:BRADI4G00380.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G00380.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G00380.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ85582.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85582.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000883; KQJ85582.1; -; Genomic_DNA. DR EnsemblPlants; BRADI4G00380.1; BRADI4G00380.1; BRADI4G00380. DR Gramene; BRADI4G00380.1; BRADI4G00380.1; BRADI4G00380. DR eggNOG; ENOG410JPPK; Eukaryota. DR eggNOG; ENOG41118R3; LUCA. DR InParanoid; I1IG05; -. DR OMA; RFDASGC; -. DR OrthoDB; EOG09360PZR; -. DR Proteomes; UP000008810; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 300 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 300 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 301 AA; 32213 MW; 317FF8001D48A386 CRC64; MAAAALSGGG AVRRRKFFKV LLPGTFESSL WLPPKFAAGL EACPPGIAVA TLRDPAGRSW RVDLDRRGGN SVCFTGKGWR GFVSCCGLSA GNFLVFDHLA ALDFAVDPFD ASGCSLDAIV TPPVKLKVDE DDDTASRCHQ DTLSSGNDNN NGGRSPAGTK RKRKRSPNAT TAGGGSCERG GRRRARTEEE DNGETLLVRR RIGTPYELQC LDVTMGFCES LGWTTSRTAE LVVVDAGNGG ERRRWEVGVK VAGKGGMILR GWPEFAKDNG LRVADACVFR PVHVVGTGDR FVQVQVLRGQ A // ID I1IGF8_BRADI Unreviewed; 940 AA. AC I1IGF8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100841896 {ECO:0000313|EnsemblPlants:BRADI4G01730.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G01730.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI4G01730.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI4G01730.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G01730.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G01730.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 15368.BRADI4G01730.1; -. DR EnsemblPlants; BRADI4G01730.1; BRADI4G01730.1; BRADI4G01730. DR Gramene; BRADI4G01730.1; BRADI4G01730.1; BRADI4G01730. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1IGF8; -. DR OMA; GSKQPTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008810; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 176 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 807 891 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 176 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 940 AA; 104140 MW; 9DFC5DADF490E629 CRC64; MAVGGSFGEW SRSSAVAAAR VPVLCLRKPR FGIVFGIWRA LRSAMARIQL SKNKMTQTLP ENDGEQRCLN SELWHACAGP LVSLPVVGSR VIYFPQGHSE QVAASTNKEV DGQIPNYPNL PPQLICQLHN VTMHADVETD EVYAQMTLQP LSPEEQKEPF LPIELGAASK QPTNYFCKTL TASDTSTHGG FSVPRRSAEK VFPPLDFSLQ PPCQELIARD LHDNEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIWNDNNQL LLGIRHANRP QTIMPSSVLS SDSMHIGLLA AAAHAAATNS RFTIFYNPRS SPSEFVIPLA KYVKSVYHTR VSVGMRFRML FETEESSVRR YMGTVTAISD LDSVRWPNSH WRSVKVGWDE STAGEKQPRV SLWEIEPLTT FPMYPTAFPL RLKRPWASGL PSMHGMFNGV KNDDFARYSS LMWLGNGDRG TQSSNFQGLG VSPWLQPRIE SPLLGLKPDT YQQMAAAALE EIRAGDPLIQ SSALLQFQQT QNLNGGLDSP YANHVLQQMQ YQSSLPTVQE GYNQYSGNSG FLQSHLQQLQ LHNPQQLQKQ QELPSLQQQR HQILQQQSHQ EMQQQLSSSC HRVTDVDSSM PGSESASQSH SPFYQQNLLE GNNDPSLHMH NSFRDFSSQE ASNLVSLPQS SQLMAPEGWP SKRLAVEPLA HVESRSARPK LENGNHQNSI SHFAGTLASE SARDCSSVQA CGSNIDNQLL SSSLHDGMSS VRGGSGNGTV SMAIPLFRYD GEDLPPANSL ATSSCLGESA TFNSLDNICG VNPSQGGTFV KVYKSGSPGR SLDITKFSSY YELRSELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VWCIKILSPQ DVHQMVRNGE GLLSASGARM MQGNVCDDYS ASHDLQNLTG NIASVPPLDY // ID I1IGX2_BRADI Unreviewed; 413 AA. AC I1IGX2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G02950.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G02950.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI4G02950.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI4G02950.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G02950.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G02950.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI4G02950.1; BRADI4G02950.1; BRADI4G02950. DR Gramene; BRADI4G02950.1; BRADI4G02950.1; BRADI4G02950. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; I1IGX2; -. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000008810; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 319 405 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 319 405 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 47312 MW; 70604016BE024643 CRC64; MAAAGKMMGE KGGCGRCREW QEHYYWEHMD VSKIRFSKIM AGDFQQSISI PEKFANNFSG QIDKGCTLKV PSGETWRVGI EKIADKLFFV SGWDAFAKAH ELQEHDILFF KCSGSGSFDV LIFDASGCEK VSSFFTDKKG TNMHKHFDHI VSQQAEEHYL LSDSGDVNMP PSPLVGSPHK ASASNKPSGK TKPREESESP NDSDYRVKHE LTQEENDSDD EDTDSNKYYS RFANYLTLGE REEIFGLASI QPGNPIFVAV LQKSHVRHRN NFLVSLSIQF PLETVGAFFY HKSYQYLNTL CEQQLRSTGL NQKMLCLQII SSKFAADHLE GRSQDMLLLR PNRKEKWYVK YYYHASSTRG FNCQRWVKFV RDNKLREGYI CIFELLKGTR KATTATMMIH VIRKVDDRFV LLG // ID I1IGX6_BRADI Unreviewed; 1226 AA. AC I1IGX6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G02990.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G02990.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI4G02990.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI4G02990.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G02990.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G02990.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI4G02990.1; BRADI4G02990.1; BRADI4G02990. DR Gramene; BRADI4G02990.1; BRADI4G02990.1; BRADI4G02990. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; I1IGX6; -. DR OMA; DNGIVEH; -. DR OrthoDB; EOG093605WP; -. DR Proteomes; UP000008810; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 222 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 373 468 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 652 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 752 847 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 929 1033 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 222 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 373 468 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 550 652 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 752 847 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 929 1033 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1226 AA; 139496 MW; A1129ED54644254A CRC64; MSVTTAFVCT SHLISSFLQN IPEKFVRSVG GHIPELVKLE TPDGNTHTVR VAKEQNNLVL RSGWEIFASV YELEEGDLLR FRYSGDSHFK VEIYDLSACE KESSCVVMNC NPCLQKRSIP HDSPMRSPGD EKLATRHNGS CSNSCKTSKT NPAGSPIRKP TEKDTPPSKG SQDPMDSDEL RTTTRSCYVL AIGCNLTKAH KAEIDELEQK NKSEIPLKTL GVHFEIKTDD TYILSAGWFG FVEDNELQEG DTCAFEVLKS QRSFTMAVHV LKEGFYHPPA SLQDLLLPPT VRPEDNVRFT RFTTLEGLMK TEVYEKVEAI ESGIPIFVSI MLKTNIDGGR TSILIMDEEG KGRCERCKEW QEHFYWEHMD VSKMRFFKLM TGDFEQHISI PEKVASKFIR QMQIVEGFDL KAPSGETWHV GVTKVANELF FRLGWRDFAK AHELQENDLV LFTFTGNSSF EVLIFDASGC EKLSSLFSGK MREHFDDLGG KEPSQSPTSS SCDDVKHETS DGDESDHEPY YSRSAKRLLD TEKREIIGLA LIQPDNPAFM TVLQTSNVQG KHKFLIIPIE FAADHLQRKS HDVLLIRPGR EDKWYVRHYQ GSSSRGFKCQ PWAKFVRDNR LHEGDVCVFE LIKCARRKTK KAAMAMMVVH VARRRKADSR AGFTPSANRF RPKGNVRFTR FTTLEGLMKT KVYEKVEAIK SGIPIFVSIM LKTNIHDSST CILLMDEEGK GRCERCREWQ EHFYWEHMDG RKMRFFKLMS GDFEQSISIP DKFASNFIRQ MQIVEGFDLK AQSGETWHVG VTKVSNDLFF RSGWGDFAKA HELQENDLLL FTFTGNSSFD VLIFDASGCE KLSSLFSGKM RKHFDDLGGT ELSESPNSSS YDDVKHETSE EDESDHEPYY SRSAKRLLDT EKREITGLAS IQPDNPAFMT VLQTSSVQGK SKFLIIPMEF AADHLQRKSH DILLVRPARE ERWHVRYYQW STSIGFKGKS WAKFVCDNRL REGDVCVFEL IICARRKKMK KTAMTIIAVH VARRRKADGR CSSLTGACRK LGRTRIHARQ PRGIKIFSQI SLPIHLSSRL TVLYKSRLME TFESWVVPDE AAETVLSVDP LRHHRARLRL FPQSWHAVPS KSKRWMPPPT GGISRATSST PRSCRYGETP RGTAGEEKGC SQGGWSSAPR HVDRFVWVKK PRSPDAAKAR SPDAYMLSSS KHKFSSSIDL NVQCSN // ID I1IGX7_BRADI Unreviewed; 590 AA. AC I1IGX7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G03000.1}; GN Name=LOC100842086 {ECO:0000313|EnsemblPlants:BRADI4G03000.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G03000.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI4G03000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI4G03000.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G03000.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G03000.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI4G03000.1; BRADI4G03000.1; BRADI4G03000. DR Gramene; BRADI4G03000.1; BRADI4G03000.1; BRADI4G03000. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR InParanoid; I1IGX7; -. DR OMA; DICIFEI; -. DR OrthoDB; EOG093605MD; -. DR Proteomes; UP000008810; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 383 483 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 383 483 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 590 AA; 66978 MW; 7F808AC25E32E31D CRC64; MAGQDHEQDD RSGHNISSRK YFFECMVGDF HEKMIIPRKF VENFKGQIAE VIKLEAPDGN IYNVHTIKDL NKIHLGSGWA SFANLYELKE GYMLVFRYIR DSHFKVLIFD YGSCCEKEVF HVVMNRGGPD AQEGTHLDQS PPRRSQDGGP SNGESHRRCE WCDAHYYWHH LDDRQKHFFR FMVGNFRQEM SIPEKFVNNF RGHISEVIKV EAPDGNVYSI QVTKDLDKIV LGSGWAAFAD THELKEHDVL VFRYIGDSHF KTIIFEPNGC EKELFHVVMN RACNVGETGI FCDQPVPKEA RCRYGGSHDN DNRKSKKKTP LHLPSPRSAE GVASSEDIQD TMNSCGLQET AEPLYVLAKE CNLTTEQKAE VGALVKKNRP GVPFYITALN KTSLSESLVI CKAYAVKHLP HEDQPITLCH PQSSKTWDAS FRVIIYGTSI LPCITSTGWL EFVQDSKLQE GDICIFEISK SDGRVIMVIH SLEGGYHPPS KEPESQNNCE HLVKGEATDQ DEESDDEHAE PDCYYSRFAN YLTAEEQEEI FGLASIQLGN PVYVTVLCKS HVRGSNNMLV IHNQFAAKHL AERSHDILLL // ID I1IIF9_BRADI Unreviewed; 816 AA. AC I1IIF9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100841363 {ECO:0000313|EnsemblPlants:BRADI4G07470.2}; GN ORFNames=BRADI_4g07470 {ECO:0000313|EMBL:KQJ86741.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G07470.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ86741.1, ECO:0000313|EnsemblPlants:BRADI4G07470.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ86741.1, RC ECO:0000313|EnsemblPlants:BRADI4G07470.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G07470.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G07470.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ86741.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ86741.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000883; KQJ86741.1; -; Genomic_DNA. DR EMBL; CM000883; KQJ86742.1; -; Genomic_DNA. DR RefSeq; XP_010237262.1; XM_010238960.2. DR EnsemblPlants; BRADI4G07470.1; BRADI4G07470.1; BRADI4G07470. DR EnsemblPlants; BRADI4G07470.2; BRADI4G07470.2; BRADI4G07470. DR GeneID; 100841363; -. DR Gramene; BRADI4G07470.1; BRADI4G07470.1; BRADI4G07470. DR Gramene; BRADI4G07470.2; BRADI4G07470.2; BRADI4G07470. DR KEGG; bdi:100841363; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008810; Chromosome 4. DR ExpressionAtlas; I1IIF9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 704 788 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 816 AA; 90568 MW; 4B33BA797DD07948 CRC64; MAAAATAAAG RGAGGQGGAV DELYAELWKA CAGPLVSVPA VGERVFYFPQ GHIEQVEAST NQVAEQQGAP LYNLPWKIPC KVMNVELKAE QDTDEVYAQL TLLPEKQNEH ASTEGEKEEV PAAVPAVHER PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSQN PPTQELMTRD LHGVEWRFRH IFRGQPKRHL LQSGWSVFVS NKRLVARDAF IFLRGENGEL RVGVRRAMRQ QANIPSSVIS SHSMHLGVLA TAWHAVNTGS MFTVYYKPRT SPAEFVVPCD LYYESMKRNH SIGMRFKMRF EGEEAAEQRF TGTIVGIGDS DPSGWADSKW RSLKVRWDEA SSVPRPDRVS PWQIEPAVSP LSVNPLQAPR NKRSRPNAIA SSPELSPVNR EVSSKVTANS QHNGLPRALQ RQESETSTSR FGDNNVKTPG KLTMWPSRTD QEKSNITVQR SSEGWMQMQR PEGYTNIVSR FQPLKDAQNP PCSFPSQISG NCSNTWNIVN VHYPDQQVNR NTFPGTWSCM PPNSGFGVNQ HNYLMTPDRA PSQRAENAKF SWNGDFTSVQ ARGIDERSLG WFEHAEPNPH IDDASSSVIK SHPLGHALGK TKGSPCMLFG FPLDGPAKSE PMISPPSVAY DGMPETPCSE KQPQPEVIEL DRSPGTSKLV SPLDENQSDS AMAKHQTCPE ATRNIQSKLQ CSTRSCKKVH KQGIALGRSV DLTRFTCYDE LIAELDRMFD FGGELKGSCE NWMVVYTDSD NDMMLVGDDP WNEFCDVVHK IFIYTREEVS KMNPGALVSR SEDSLSASLD RGVVGK // ID I1IIG0_BRADI Unreviewed; 686 AA. AC I1IIG0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100841363 {ECO:0000313|EnsemblPlants:BRADI4G07470.3}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G07470.3, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI4G07470.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI4G07470.3}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G07470.3} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G07470.3}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI4G07470.3; BRADI4G07470.3; BRADI4G07470. DR Gramene; BRADI4G07470.3; BRADI4G07470.3; BRADI4G07470. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000008810; Chromosome 4. DR ExpressionAtlas; I1IIG0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 76074 MW; 800306C023C61A1D CRC64; MAAAATAAAG RGAGGQGGAV DELYAELWKA CAGPLVSVPA VGERVFYFPQ GHIEQVEAST NQVAEQQGAP LYNLPWKIPC KVMNVELKAE QDTDEVYAQL TLLPEKQNEH ASTEGEKEEV PAAVPAVHER PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSQN PPTQELMTRD LHGVEWRFRH IFRGQPKRHL LQSGWSVFVS NKRLVARDAF IFLRGENGEL RVGVRRAMRQ QANIPSSVIS SHSMHLGVLA TAWHAVNTGS MFTVYYKPRT SPAEFVVPCD LYYESMKRNH SIGMRFKMRF EGEEAAEQRF TGTIVGIGDS DPSGWADSKW RSLKVRWDEA SSVPRPDRVS PWQIEPAVSP LSVNPLQAPR NKRSRPNAIA SSPELSPVNR EVSSKVTANS QHNGLPRALQ RQESETSTSR FGDNNVKTPG KLTMWPSRTD QEKSNITVQR SSEGWMQMQR PEGYTNIVSR FQPLKDAQNP PCSFPSQISG NCSNTWNIVN VHYPDQQVNR NTFPGTWSCM PPNSGFGVNQ HNYLMTPDRA PSQRAENAKF SWNGDFTSVQ ARGIDERSLG WFEHAEPNPH IDDASSSVIK SHPLGHALGK TKGSPCMLFG FPLDGPAKSE PMISPPSVAY DGMPETPCSE KQPQPEKLQE TFRANCNVPP EAARRSTSRE LHLAGQ // ID I1ILH1_BRADI Unreviewed; 850 AA. AC I1ILH1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823699 {ECO:0000313|EnsemblPlants:BRADI4G17410.1}; GN ORFNames=BRADI_4g17410 {ECO:0000313|EMBL:KQJ88393.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G17410.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ88393.1, ECO:0000313|EnsemblPlants:BRADI4G17410.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ88393.1, RC ECO:0000313|EnsemblPlants:BRADI4G17410.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G17410.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G17410.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ88393.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ88393.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000883; KQJ88393.1; -; Genomic_DNA. DR EMBL; CM000883; KQJ88394.1; -; Genomic_DNA. DR EMBL; CM000883; KQJ88395.1; -; Genomic_DNA. DR RefSeq; XP_014758384.1; XM_014902898.1. DR STRING; 15368.BRADI4G17410.1; -. DR EnsemblPlants; BRADI4G17410.1; BRADI4G17410.1; BRADI4G17410. DR EnsemblPlants; BRADI4G17410.3; BRADI4G17410.3; BRADI4G17410. DR GeneID; 100823699; -. DR Gramene; BRADI4G17410.1; BRADI4G17410.1; BRADI4G17410. DR Gramene; BRADI4G17410.3; BRADI4G17410.3; BRADI4G17410. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008810; Chromosome 4. DR ExpressionAtlas; I1ILH1; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 722 806 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 850 AA; 93386 MW; 94799421D3DFACCC CRC64; MSCAAAAAAA AAGGGEGDAA TAAARAGGGG EGEDALFSEL WSACAGPLVT VPKVGDKVFY FPQGHIEQVE ASTNQVAEQR MQLYNLPWKI LCEVMNVELK AESDTDEVYA QLTLLPESKQ EENASTEEVS AAPSAAPVRP RVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELTAKDL HGAEWRFRHI FRGQPRRHLL QSGWSVFVSA KRLVAGDAFI FLRGENGELR VGVRRAMRQQ TNVPSSVISS HSMHLGVLAT AWHAVNTGTM FTVYYKPRTS PAEFVVPYDR YMESLKRNYS IGMRFKMRFE GEEAPEQRFT GTIVGMGDSD PAGWAESKWR SLKVRWDEAS SIPRPERVSP WQIEPAVSPP PINPLPVPRT KRPRPNVIAS TTDSSTQAKE VAPKVAAETQ QHALQRAFQT QENATPKTGF GDGSELDTTQ KSVLQPSGFE REKNNIPTQI KLGSNGWMQM SRPESYSEML SGFQPPKDVQ NQQGFRSFPE QIAAGHSNFW HTVNAHYQDQ QGSHSTFPGS WSLMPQNTGF GLNKQNYPMM QEVAGLPQRA ANTKFGNGGY AALPGRGFDQ YSTGWFGHMM PSSHMDDTQP RVIKPQPLVV GHGDMQKTKG ASCKLFGIHL DSPAKSEPLK SPPSVAYDGM PHTPGSAELC RMDATEPEKC YDPSKTPKPL DAPYADSVPE KHLSCQQASR NASGKSRGGS ARSCKKVHKQ GIALGRSVDL TKFNGYMELV SELDDMFDFN GDLKSSNKEW MVVYTDHEGD MMLVGDDPWS EFCNIVHKIF IYTREEVQRM APGALNSRSE ESPANSMERG SAAREVRGCL SASSLNSENC // ID I1ILH2_BRADI Unreviewed; 755 AA. AC I1ILH2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823699 {ECO:0000313|EnsemblPlants:BRADI4G17410.2}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G17410.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI4G17410.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI4G17410.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G17410.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G17410.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI4G17410.2; BRADI4G17410.2; BRADI4G17410. DR Gramene; BRADI4G17410.2; BRADI4G17410.2; BRADI4G17410. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000008810; Chromosome 4. DR ExpressionAtlas; I1ILH2; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 755 AA; 82462 MW; 164DA3F27CAD8F87 CRC64; MSCAAAAAAA AAGGGEGDAA TAAARAGGGG EGEDALFSEL WSACAGPLVT VPKVGDKVFY FPQGHIEQVE ASTNQVAEQR MQLYNLPWKI LCEVMNVELK AESDTDEVYA QLTLLPESKQ EENASTEEVS AAPSAAPVRP RVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELTAKDL HGAEWRFRHI FRGQPRRHLL QSGWSVFVSA KRLVAGDAFI FLRGENGELR VGVRRAMRQQ TNVPSSVISS HSMHLGVLAT AWHAVNTGTM FTVYYKPRTS PAEFVVPYDR YMESLKRNYS IGMRFKMRFE GEEAPEQRFT GTIVGMGDSD PAGWAESKWR SLKVRWDEAS SIPRPERVSP WQIEPAVSPP PINPLPVPRT KRPRPNVIAS TTDSSTQAKE VAPKVAAETQ QHALQRAFQT QENATPKTGF GDGSELDTTQ KSVLQPSGFE REKNNIPTQI KLGSNGWMQM SRPESYSEML SGFQPPKDVQ NQQGFRSFPE QIAAGHSNFW HTVNAHYQDQ QGSHSTFPGS WSLMPQNTGF GLNKQNYPMM QEVAGLPQRA ANTKFGNGGY AALPGRGFDQ YSTGWFGHMM PSSHMDDTQP RVIKPQPLVV GHGDMQKTKG ASCKLFGIHL DSPAKSEPLK SPPSVAYDGM PHTPGSAELC RMDATEPEKC YDPSKTPKPL DAPYADSVPE KHLSCQQASR NASGKSRGGS ARSCKKVSQD LHLHKGGGPA DGSRSPELAF GRKSC // ID I1ILH4_BRADI Unreviewed; 675 AA. AC I1ILH4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100823699 {ECO:0000313|EnsemblPlants:BRADI4G17410.5}; GN ORFNames=BRADI_4g17410 {ECO:0000313|EMBL:KQJ88396.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G17410.5, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ88396.1, ECO:0000313|EnsemblPlants:BRADI4G17410.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ88396.1, RC ECO:0000313|EnsemblPlants:BRADI4G17410.5}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G17410.5} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G17410.5}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ88396.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ88396.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000883; KQJ88396.1; -; Genomic_DNA. DR EnsemblPlants; BRADI4G17410.5; BRADI4G17410.5; BRADI4G17410. DR Gramene; BRADI4G17410.5; BRADI4G17410.5; BRADI4G17410. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000008810; Chromosome 4. DR ExpressionAtlas; I1ILH4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 675 AA; 75081 MW; 1A533FC1D940D741 CRC64; MSRQPPTQEL TAKDLHGAEW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE NGELRVGVRR AMRQQTNVPS SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPAEFV VPYDRYMESL KRNYSIGMRF KMRFEGEEAP EQRFTGTIVG MGDSDPAGWA ESKWRSLKVR WDEASSIPRP ERVSPWQIEP AVSPPPINPL PVPRTKRPRP NVIASTTDSS TQAKEVAPKV AAETQQHALQ RAFQTQENAT PKTGFGDGSE LDTTQKSVLQ PSGFEREKNN IPTQIKLGSN GWMQMSRPES YSEMLSGFQP PKDVQNQQGF RSFPEQIAAG HSNFWHTVNA HYQDQQGSHS TFPGSWSLMP QNTGFGLNKQ NYPMMQEVAG LPQRAANTKF GNGGYAALPG RGFDQYSTGW FGHMMPSSHM DDTQPRVIKP QPLVVGHGDM QKTKGASCKL FGIHLDSPAK SEPLKSPPSV AYDGMPHTPG SAELCRMDAT EPEKCYDPSK TPKPLDAPYA DSVPEKHLSC QQASRNASGK SRGGSARSCK KVHKQGIALG RSVDLTKFNG YMELVSELDD MFDFNGDLKS SNKEWMVVYT DHEGDMMLVG DDPWSEFCNI VHKIFIYTRE EVQRMAPGAL NSRSEESPAN SMERGSAARE VRGCLSASSL NSENC // ID I1IMS6_BRADI Unreviewed; 582 AA. AC I1IMS6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQJ89058.1, ECO:0000313|EnsemblPlants:BRADI4G23270.1}; GN Name=LOC100822154 {ECO:0000313|EnsemblPlants:BRADI4G23270.1}; GN ORFNames=BRADI_4g23270 {ECO:0000313|EMBL:KQJ89058.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G23270.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ89058.1, ECO:0000313|EnsemblPlants:BRADI4G23270.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ89058.1, RC ECO:0000313|EnsemblPlants:BRADI4G23270.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G23270.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G23270.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ89058.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ89058.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000883; KQJ89058.1; -; Genomic_DNA. DR RefSeq; XP_003576206.1; XM_003576158.3. DR STRING; 15368.BRADI4G23270.1; -. DR EnsemblPlants; BRADI4G23270.1; BRADI4G23270.1; BRADI4G23270. DR GeneID; 100822154; -. DR Gramene; BRADI4G23270.1; BRADI4G23270.1; BRADI4G23270. DR KEGG; bdi:100822154; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; I1IMS6; -. DR OMA; DGRSKFS; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000008810; Chromosome 4. DR ExpressionAtlas; I1IMS6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 474 569 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 474 569 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 11 45 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 582 AA; 65243 MW; 424651B281D54D54 CRC64; MARRQEQGSR RREQQERERR RREELEREES TAAGEKEKEK EKEKEESTVA AAMVATEKEN GEDKEKEKEG EEEKFGQQFF RVFLPQQYGE RLRIPLSFNQ YLRNQPAGMV SLKGQSGNIW LAELAVDTEG LFFANGWKEF VRDHSIETGH FLTFRYDGRS KFSVVVFDGK CIEKPSAFHA RPCKDLIVKL ENGEGDMGMN ATDPSQILVS PLGGSNENTR ERVSEMDANG TILQRCSSVL EKGKKISPGV LVGTNKTAST SLNKDMSVSD QSESVPNEES IGTTRKRIRE MDANGSTSEK CSKVSEMVMK KGPEASVVNN EASTSLNMDM NAAGPAESLL ATPEDSNGTT RKRVKEINVN DSTFKKCSSA SVKGKEKCPV ASVGTYKSTT TSRNSTEESD SESSMLEQSI SSIKAEISSP MRLRKNKDVP KCGKYIATGQ RQLLVISQRP PVTEEQKNHA LQRAKKFKSK NPFALQIMKE SYVYVGFFMN LPCGFVRDCL PRANKKLKLW DPQGKSWDVN YVYYSARAVG AFSGGWSKFS LGNNLEKFDI CVFELISKDD IKVHIYRVVP EITPFLPGTN RK // ID I1IMS7_BRADI Unreviewed; 530 AA. AC I1IMS7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G23270.3}; GN Name=LOC100822154 {ECO:0000313|EnsemblPlants:BRADI4G23270.3}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G23270.3, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI4G23270.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI4G23270.3}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G23270.3} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G23270.3}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI4G23270.3; BRADI4G23270.3; BRADI4G23270. DR Gramene; BRADI4G23270.3; BRADI4G23270.3; BRADI4G23270. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR Proteomes; UP000008810; Chromosome 4. DR ExpressionAtlas; I1IMS7; baseline. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 482 504 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 77 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 11 45 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 530 AA; 59163 MW; 71FFBFA64A0167F2 CRC64; MARRQEQGSR RREQQERERR RREELEREES TAAGEKEKEK EKEKEESTVA AAMVATEKEN GEDKEKEKEG EEEKFGQQFF RVFLPQQYGE RLRIPLSFNQ YLRNQPAGMV SLKGQSGNIW LAELAVDTEG LFFANGWKEF VRDHSIETGH FLTFRYDGRS KFSVVVFDGK CIEKPSAFHA RPCKDLIVKL ENGEGDMGMN ATDPSQILVS PLGGSNENTR ERVSEMDANG TILQRCSSVL EKGKKISPGV LVGTNKTAST SLNKDMSVSD QSESVPNEES IGTTRKRIRE MDANGSTSEK CSKVSEMVMK KGPEASVVNN EASTSLNMDM NAAGPAESLL ATPEDSNGTT RKRVKEINVN DSTFKKCSSA SVKGKEKCPV ASVGTYKSTT TSRNSTEESD SESSMLEQSI SSIKAEISSP MRLRKNKDVP KCGKYIATGQ RQLLVISQRP PVTEEQKNHA LQRAKKFKSK NPFALQIMKE SYVYVGFFMV MILSTFLVCM NTILGCILNC QNDTGTGNVK SFCYKCFLCF // ID I1INF2_BRADI Unreviewed; 277 AA. AC I1INF2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQJ89377.1, ECO:0000313|EnsemblPlants:BRADI4G25170.1}; GN Name=LOC100824846 {ECO:0000313|EnsemblPlants:BRADI4G25170.1}; GN ORFNames=BRADI_4g25170 {ECO:0000313|EMBL:KQJ89377.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G25170.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ89377.1, ECO:0000313|EnsemblPlants:BRADI4G25170.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ89377.1, RC ECO:0000313|EnsemblPlants:BRADI4G25170.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G25170.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G25170.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ89377.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ89377.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000883; KQJ89377.1; -; Genomic_DNA. DR RefSeq; XP_003577828.1; XM_003577780.3. DR EnsemblPlants; BRADI4G25170.1; BRADI4G25170.1; BRADI4G25170. DR GeneID; 100824846; -. DR Gramene; BRADI4G25170.1; BRADI4G25170.1; BRADI4G25170. DR KEGG; bdi:100824846; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; I1INF2; -. DR OMA; ANSQAYR; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008810; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31134 MW; 255EA2390D88C630 CRC64; MAMNPLSQEH HPNAWPWGVA MYTNLHYQQY HYEKEHLFEK ALTPSDVGKL NRLVIPKQHA ERCFPLGGDS GEKGLLLSFD DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDV VHFERVRGLG TGDRLFIGCR RRGDVGAPTP PPAVRVMPAS GQNHPREQHQ QQPWSPMCYS TSGSYPTSPA NSQAYRRSVD HDHSDMHHAG ESQWDADGRT CSPASAPTRR LRLFGVNLDC GPEPEADTST ATEAMYGYMH QIPYAAVSPV PSNWGSS // ID I1IU87_BRADI Unreviewed; 273 AA. AC I1IU87; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQJ92192.1, ECO:0000313|EnsemblPlants:BRADI4G42167.1}; GN Name=LOC100841176 {ECO:0000313|EnsemblPlants:BRADI4G42167.1}; GN ORFNames=BRADI_4g42167 {ECO:0000313|EMBL:KQJ92192.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI4G42167.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ92192.1, ECO:0000313|EnsemblPlants:BRADI4G42167.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ92192.1, RC ECO:0000313|EnsemblPlants:BRADI4G42167.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI4G42167.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI4G42167.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ92192.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ92192.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000883; KQJ92192.1; -; Genomic_DNA. DR RefSeq; XP_003578891.1; XM_003578843.3. DR STRING; 15368.BRADI4G42167.1; -. DR EnsemblPlants; BRADI4G42167.1; BRADI4G42167.1; BRADI4G42167. DR GeneID; 100841176; -. DR Gramene; BRADI4G42167.1; BRADI4G42167.1; BRADI4G42167. DR KEGG; bdi:100841176; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; I1IU87; -. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008810; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 30479 MW; 5366A00078390C09 CRC64; MAMHPLSQGH PQAWPWGVAM YTNLHYHQQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKHLDAGDV VHFDRVRGLG TGDRLFIGCR RRGETAPAAV ATPPPVRVLP PALNAGEQKP WSPMCYSTSG SYPTSPANSY AYRHSVEQDH SDMLHAGESQ RDADAKSSST ASAPPSRRLR LFGVNLDCGP EPEAEAPTTP MYGYTNHSPY AAVATVPNYW GSS // ID I1IY20_BRADI Unreviewed; 646 AA. AC I1IY20; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100826105 {ECO:0000313|EnsemblPlants:BRADI5G10950.1}; GN ORFNames=BRADI_5g10950 {ECO:0000313|EMBL:KQJ82781.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI5G10950.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ82781.1, ECO:0000313|EnsemblPlants:BRADI5G10950.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ82781.1, RC ECO:0000313|EnsemblPlants:BRADI5G10950.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI5G10950.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI5G10950.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ82781.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ82781.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000884; KQJ82781.1; -; Genomic_DNA. DR RefSeq; XP_010239942.1; XM_010241640.2. DR STRING; 15368.BRADI5G10950.1; -. DR EnsemblPlants; BRADI5G10950.1; BRADI5G10950.1; BRADI5G10950. DR GeneID; 100826105; -. DR Gramene; BRADI5G10950.1; BRADI5G10950.1; BRADI5G10950. DR KEGG; bdi:100826105; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR InParanoid; I1IY20; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008810; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 536 629 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 646 AA; 71904 MW; D9A8EF6B7A5EC96A CRC64; MAAAAMEMSN HAPGSAPGIC SDALFHELWH ACAGPLITVP RQGERVYYFP QGHIEQLEAS TNQQLDQYLP MFNLPSKILC SVVNVELRTE ADSDEVYAQI MLQPQDEQSE LTSAGPPQEL ERGTIHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMS QNPPCQELVA KDLHGAEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGGNG ELRVGVRRHM RQVNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFVVS VNKYLEAKKQ NMSVGMRFKM KFEGDEALER RFSGTIVGMG STPTMPSSQW ADSDWKSLKV QWDEPSSILR PDRVSLWELE PLDSANPQTP EPPLRNKRAR ALASPSVVPD LPPNFGLWKS PSEPSQTLSF SEPQRARELF PTSIFSSTNV MFDQFYWPGR ETKDGSYAAS TNKVTAERKH EPTTTGGCRL FGIEISSTVE ETQPVVTASV GDHDQTAASV DMDSSVLSQP SNINNSDAPA GSSERALLET QSRQVRSCTK VIMKGMAVGR AVDLARLDGY GDLHRKLEEM FDIHGELCST LKRWQVVYAD DEDDMMLVGD DPWDEFCGMV KRIYIYSYEE AKQLAPKAKT PVIDGATKSE WCELMT // ID I1IZQ9_BRADI Unreviewed; 715 AA. AC I1IZQ9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100846263 {ECO:0000313|EnsemblPlants:BRADI5G15904.1}; GN ORFNames=BRADI_5g15904 {ECO:0000313|EMBL:KQJ83629.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI5G15904.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ83629.1, ECO:0000313|EnsemblPlants:BRADI5G15904.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ83629.1, RC ECO:0000313|EnsemblPlants:BRADI5G15904.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI5G15904.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI5G15904.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ83629.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ83629.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000884; KQJ83629.1; -; Genomic_DNA. DR RefSeq; XP_003580146.1; XM_003580098.3. DR EnsemblPlants; BRADI5G15904.1; BRADI5G15904.1; BRADI5G15904. DR GeneID; 100846263; -. DR Gramene; BRADI5G15904.1; BRADI5G15904.1; BRADI5G15904. DR KEGG; bdi:100846263; -. DR eggNOG; ENOG410JQUD; Eukaryota. DR eggNOG; ENOG410XYC6; LUCA. DR InParanoid; I1IZQ9; -. DR OMA; DEPFCAF; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008810; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 635 713 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 715 AA; 76460 MW; 3E8A4402766C2F37 CRC64; MLTFTELACP AGSSAADDAV DSQLWLACAG SMCSVPPVGA AVYYFPQGHA EQAAGAGAVD MPRVPDLVPC RVSAVRFMAD PQSDEVFAKI RLLPLRRGEP VADVGEAAAA REPLQQDADN NKPASFAKTL TQSDANNGGG FSVPRFCAET IFPALDYGAE PPVQSIFVRD VHGEEFKFRH IYRGTPRRHL LTTGWSNFVN QKKLLAGDSV VFLRASGEGG GGGEVHVGIR RARRVFCGAD VEGPSSAASG WDHYRGLMRG NASSGNDGGG KGNNNNKVTA EDVAAAARLA AAGQVFEVVY YPRASTPEFC VRAGAVKAAM QVRWCPGMRF KMAFETEDSS RISWFMGTVA GVCAADPVHW PQSPWRLLQV SWDEPELLQN VKRVCPWLVE LVSSMPNLHL PSFSPPRKKP RIPTCADFPL DGSHFFLQPP FAPLGLNPSS LAQHGHHGFS FFPFPGSGGT PPAPAPLAGG IQGARHAHFG PSPSSVDLRN SKHPRSSLRP HTDIRHPAAP ALVVAPCAPG ISTDLTIGNG TSSVREDDVA TCALPKAPPT LQLFGQEILT EEQMMKASSN TGGLTLTSSP NSETEKAADV SEGSDSVVTQ GSTSSNNNNS TSSWRLRWFG DNGSGQASEL LGLQPGQCKV FVESDAIGRN LDLSQLSSFE ELYSRMSDMF DIESAELRNN VHYRSAAGEV KNVGDEPFRA FVKSARRLTI FAEAE // ID I1J0X2_BRADI Unreviewed; 413 AA. AC I1J0X2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQJ84190.1, ECO:0000313|EnsemblPlants:BRADI5G19260.1}; GN Name=LOC100839472 {ECO:0000313|EnsemblPlants:BRADI5G19260.1}; GN ORFNames=BRADI_5g19260 {ECO:0000313|EMBL:KQJ84190.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI5G19260.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ84190.1, ECO:0000313|EnsemblPlants:BRADI5G19260.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ84190.1, RC ECO:0000313|EnsemblPlants:BRADI5G19260.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI5G19260.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI5G19260.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ84190.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ84190.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000884; KQJ84190.1; -; Genomic_DNA. DR RefSeq; XP_003580380.1; XM_003580332.3. DR EnsemblPlants; BRADI5G19260.1; BRADI5G19260.1; BRADI5G19260. DR GeneID; 100839472; -. DR Gramene; BRADI5G19260.1; BRADI5G19260.1; BRADI5G19260. DR KEGG; bdi:100839472; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; I1J0X2; -. DR OMA; DFRNINA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008810; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 44036 MW; D7B0016C6EF33F86 CRC64; MEFTPAGTSS RFSREGEEEE EEEGEELEEE EASPREIPFM TTMTAAASSS SSPTSASPSA AASASASARS SDGAGASGSG GGGGGGGGGD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS AANEKGLLLS FEDRTGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAA EATRDRLFID WKRRAELIRD PHRGLARLPM PMPTSSPYGP WGAGAGGFYM PPAPPATLYE HHRLRQGYDF RNINAPAPAR QVLFFGSAAG AMPPHAPMLP PPQPQQQPPL HIAVPVQPSP VVTVGLPMVL DSVPLAGSPT TAAKRVRLFG VNLDNPHSHG GGESSNDANA LSLRMPGWQR PTPHRLLELP PHGAAGAESS AASSPSSSSS SKREAHSSLD LDL // ID I1J310_BRADI Unreviewed; 955 AA. AC I1J310; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100824752 {ECO:0000313|EnsemblPlants:BRADI5G25157.1}; GN ORFNames=BRADI_5g25157 {ECO:0000313|EMBL:KQJ85149.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI5G25157.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ85149.1, ECO:0000313|EnsemblPlants:BRADI5G25157.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85149.1, RC ECO:0000313|EnsemblPlants:BRADI5G25157.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI5G25157.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI5G25157.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ85149.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85149.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000884; KQJ85149.1; -; Genomic_DNA. DR RefSeq; XP_003579438.1; XM_003579390.3. DR STRING; 15368.BRADI5G25157.1; -. DR EnsemblPlants; BRADI5G25157.1; BRADI5G25157.1; BRADI5G25157. DR GeneID; 100824752; -. DR Gramene; BRADI5G25157.1; BRADI5G25157.1; BRADI5G25157. DR KEGG; bdi:100824752; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; I1J310; -. DR KO; K14486; -. DR OMA; DYDPMRW; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000008810; Chromosome 5. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 851 935 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 144 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105663 MW; D80A572B58B09A37 CRC64; MASSQEKQPT FGVLRNAAAL LDEMQLLGEA QGAKKVINSE LWHACAGPLV FLPQRGSLVY YFPQGHSEQV AATTRKVPNS RIPNYPNLPS QLLCQVHNIT MHADKETDEV YAQMTLQPVN SETDVFPIPA LGSYAKSKHP PEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLL GVRRATRQQT QLSSSVLSTD SMHIGVLAAA AHAASSGSSF TIYYNPRTSP SPFVVPLARY NKANYVQQSV GMRFAMMFET EESSKRRYTG TIVGVSDYDP IRWPNSKWRN LQVEWDEHGY GERPERVSIW DIETPENALV FPSSSLNSKR QCLPGYGVPG LEIGSVNMPS LTEIPTVLGN PRALGNPYGN LQHMPAVGSE LAMMLLSQSG QNLGTPLSCH QSSYSSIIQN VKQNYVPPST FGVSTVPIKQ ESMHSNEAQQ QLHAPKLRRG DLENCELQPV TDSVSASELN VAVREPRNTD SYQSQSISEQ NGKGEPKVKT RRSKKGLSRK TISESSELSS TPSRVCADQQ HGFEVKLVAG DTQQINSANN EDSSGALAHG NFARQLQGQQ VEQNGSLSPP KLESSKSPDG GKSVNSFPNQ GCFSQFFDGL DWMIQPSYYQ DSNGIQSVSA SENIFSSSAN IPSTINADTM EAFQNSCLSD CFPNSIQDFI GSPDLNSITF LSPDMQNLDV QHDGSNLPST SNSYVQMSFS EDSGNHMESI QRSMNNTSCS QPQATESFDL GMYSKLPSLK ETQVLSLPEI HNSSRGTSSC SMDVTDYSID RSAKPLKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPGSSEWK LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ESGMHVLNDC IQTDH // ID I1J384_BRADI Unreviewed; 831 AA. AC I1J384; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100842100 {ECO:0000313|EnsemblPlants:BRADI5G25767.1}; GN ORFNames=BRADI_5g25767 {ECO:0000313|EMBL:KQJ85226.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI5G25767.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ85226.1, ECO:0000313|EnsemblPlants:BRADI5G25767.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85226.1, RC ECO:0000313|EnsemblPlants:BRADI5G25767.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI5G25767.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI5G25767.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ85226.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85226.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000884; KQJ85226.1; -; Genomic_DNA. DR EMBL; CM000884; KQJ85228.1; -; Genomic_DNA. DR EMBL; CM000884; KQJ85229.1; -; Genomic_DNA. DR EMBL; CM000884; KQJ85230.1; -; Genomic_DNA. DR EMBL; CM000884; KQJ85232.1; -; Genomic_DNA. DR RefSeq; XP_003580798.1; XM_003580750.3. DR STRING; 15368.BRADI5G25767.1; -. DR EnsemblPlants; BRADI5G25767.1; BRADI5G25767.1; BRADI5G25767. DR GeneID; 100842100; -. DR Gramene; BRADI5G25767.1; BRADI5G25767.1; BRADI5G25767. DR KEGG; bdi:100842100; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1J384; -. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008810; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 732 816 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 831 AA; 92806 MW; 842AAF4CBCA44048 CRC64; MSSSSGASVG QQQPPPPLPA PPPEEEKKNL NSELWHACAG PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPPQLICQLH DVTMHADVET DEVYAQMTLQ PLNPQEQNDA YLPAEMGIMS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE RVFPPLDFTQ QPPAQELIAR DIHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LWLGIRRASR TQTVMPSSVL SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ACPSEFVIPL SKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITEVS DADPVRWASS YWRSVKVGWD ESTAGERPPR VSLWEIEPLT TFPMYPSLFP LRVKHPWYSG VAGLHDDSNA LMWLRGVAGD GGYQSLNFQS PGIGPWGQQR LHPSLMSTDH DQYQAVVAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQTVSAE NQNIQTMLNS SAIQHQLQQI QQMQQAHIDQ KQKIQPDQTY QVPTSSALPS PTSLPSHLRE KFGFSDPHVN SPTFTTSSSS DNMLESSFLQ GSSKAVDLSR FNQPALNEQQ QQHQQQQQQQ QQQQQQAWKQ KFMGSSSLSF GGSVLLNSPT GKDGSLENKI GPDGQNQSLF SPQVDSSSLL YNMVPNMTSN VVDNNMSTIP SGSTYLQNPM YGCLDDSSGI FQNTGENDPT SRTFVKVYKS GSVGRSLDIT RFSNYAELRE ELGQMFGIRG QLDDPDRSGW QLVFVDREND VLLLGDDPWE SFVNSVWYIK ILSPEDVHKL GKQGNDPRYL S // ID I1J3C2_BRADI Unreviewed; 458 AA. AC I1J3C2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI5G26100.1}; GN Name=LOC100838539 {ECO:0000313|EnsemblPlants:BRADI5G26100.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI5G26100.1, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EnsemblPlants:BRADI5G26100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EnsemblPlants:BRADI5G26100.1}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI5G26100.1} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI5G26100.1}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; BRADI5G26100.1; BRADI5G26100.1; BRADI5G26100. DR Gramene; BRADI5G26100.1; BRADI5G26100.1; BRADI5G26100. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR InParanoid; I1J3C2; -. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360NNM; -. DR Proteomes; UP000008810; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 324 426 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 324 426 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 458 AA; 49067 MW; 153E83BDA48DBC4F CRC64; MAEAAKGSSA SSPTVGGGGA GAVVGATARG GFPAPSGAAV AAAAPHAHAH GTSFQALLAS MGNNRCASPN GGLLHHHHQG HGFYNNHPPA GGGGPIHAPP PMPVAMAPPY AAAASATTMQ PPPCALSGYQ YWQATGSQNG VSAQQVPGGF ADWTVYNHSA FMSVTCGSSS STNNGYHHQS LRPCSTTAWP NFMTRNPCYS TYPPAIHDHQ SPSYHSNNHA EDSGFASSFR VDPQLGHVPC FPPMSPASNN HSPVQFFNEA PFTTKLQSEA MHTQKEKNSE DPPDMESENS EELNHNPVHE NLNLNQGPED LTARFNCKEY HIVLRKDLTN SDVGNIGRIV LPKRDAEANL PALLERDGLI LQMDDFNLVA TWNFKYRFWP NNKSRMYILE STGEFVKSHG LEAGDTLIIY KNPESGKFLV RGEKASQQSA PLLCVECKEE GSNSEECGFA LSLHTKRS // ID I1J3S5_BRADI Unreviewed; 502 AA. AC I1J3S5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100836914 {ECO:0000313|EnsemblPlants:BRADI5G27400.2}; GN ORFNames=BRADI_5g27400 {ECO:0000313|EMBL:KQJ85484.1}; OS Brachypodium distachyon (Purple false brome) (Trachynia distachya). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Brachypodieae; Brachypodium. OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:BRADI5G27400.2, ECO:0000313|Proteomes:UP000008810}; RN [1] {ECO:0000313|EMBL:KQJ85484.1, ECO:0000313|EnsemblPlants:BRADI5G27400.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85484.1, RC ECO:0000313|EnsemblPlants:BRADI5G27400.2}; RX PubMed=20148030; DOI=10.1038/nature08747; RG International Brachypodium Initiative; RT "Genome sequencing and analysis of the model grass Brachypodium RT distachyon."; RL Nature 463:763-768(2010). RN [2] {ECO:0000313|EnsemblPlants:BRADI5G27400.2} RP IDENTIFICATION. RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:BRADI5G27400.2}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQJ85484.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ85484.1}; RG The International Brachypodium Initiative; RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D., RA Barry K., Lindquist E., Wang M., Pitluck S., Vogel J.P., Garvin D.F., RA Mockler T.C., Jenkins J., Schmutz J., Rokhsar D., Bevan M.W.; RT "WGS assembly of Brachypodium distachyon."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000884; KQJ85484.1; -; Genomic_DNA. DR EMBL; CM000884; KQJ85485.1; -; Genomic_DNA. DR RefSeq; XP_003579544.1; XM_003579496.3. DR RefSeq; XP_010240662.1; XM_010242360.2. DR EnsemblPlants; BRADI5G27400.2; BRADI5G27400.2; BRADI5G27400. DR GeneID; 100836914; -. DR Gramene; BRADI5G27400.2; BRADI5G27400.2; BRADI5G27400. DR KEGG; bdi:100836914; -. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR InParanoid; I1J3S5; -. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000008810; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008810}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008810}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 106 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 502 AA; 54534 MW; 33E47ED8A9608AD0 CRC64; MAEQQDPPVV VDRDVWLACA TPLSRLPAVG AQVYYFPHGH SEQCPTALAA PLPHPHLFPC TVAAVALSAD PSTDEPFATI SLVPGPHRAL GGGAPHHAVD PAFAHYAKQL TQSDANNGGG FSVPRFCADS VFPGLDFDAD PPVQTLRMRD LLGKLWEFRH IYRGTPRRHL LTTGWSRFVN AKLLVAGDAV VFMRRPDGEL LAGVRRTPRY PVSQDPAEPP RNARARVPAQ EVEDAARRAA QGAPFTVTYY PRQGAGEFVV PRKEVEDALI SPWEPGTQVR MQFLHPEDRR SEWINGVVRA VDHSIWRMLE IDWDESAPPS LKNRHVNAWQ VQLVGCPPLL KRLRIPETIA PLISGDVAMA DPLAGPGSLY MPMLMGSPIP AGMQGARQDF LADFPSSSTR MLTTQLLFPS DHPIPPSPGG GSSEVLNPEN GSPPQFPEEI RTIQLFGTTI TSAVQITNGS SEEVNQVPAA VVDGTANDDA WETSPVDFTL LNGNDGHNQN GI // ID I1J4B0_SOYBN Unreviewed; 1104 AA. AC I1J4B0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100817780 {ECO:0000313|EnsemblPlants:GLYMA01G00510.1}; GN ORFNames=GLYMA_01G002100 {ECO:0000313|EMBL:KRH74145.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G00510.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G00510.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G00510.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH74145.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH74145.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G00510.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G00510.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH74145.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH74145.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH74145.1; -; Genomic_DNA. DR RefSeq; XP_003517174.1; XM_003517126.3. DR STRING; 3847.GLYMA01G00510.1; -. DR EnsemblPlants; GLYMA01G00510.1; GLYMA01G00510.1; GLYMA01G00510. DR GeneID; 100817780; -. DR Gramene; GLYMA01G00510.1; GLYMA01G00510.1; GLYMA01G00510. DR KEGG; gmx:100817780; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1J4B0; -. DR OMA; TGARDEM; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 992 1076 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1104 AA; 121958 MW; D678AC927BB22A5B CRC64; MKKKSSIKAE LWHACAGPLV KLPPSGTHVI YFPQGHSEQV SASLNRDVHS QIPNYPNLPS KLLCLLHTLT LHADPQTDQV YAQITLQPLP SFDKDALLRS DLALESTKPP PDFFCKQLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH DTVWKFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKSVYSHQPS LGMRFRMMFE TEDSGTRRHM GTVTGISDLD PVQWKNSQWR NLQVGWDEST AGEKRSRVSI WEIEPVTAPF FICPPPFFRS KRPRQPGMPD DELSDFDNIF KQTMPWPGDD MCVKDPQGLP GLNLAQWMNM QQNPALASSL QPNYAPSLSG SILQNIPGPD ISHQLGFSAP QISQSNNVAL NTQRLLQTAP QLDHLQKLPS TSSTLGTVLP PQQQLGDITQ QSRQNLANQT IPQGQVQAQL VHPQNIVQTN NILQQQQPSS QNHQLHRSLS QNPSQQQQQT IIGQNQHQNL IQSPMPDHVQ QLQMSDDQIQ LQLLQKLQQQ KQTLLAQQTA LQHSTQLTQI QDRQRQLLDK THNLSRALTP GQVREIPPIF QNSLPKANSI SNPITKANCQ SNIQFYQQPK LQQQQPGLLS EMPGHTALHP TTTTNQLSAA GSSILTGAGG AGGAGQSVIT DEVLSCSTSP SANNCTNALP QLINSRFQRS TLVGDDMAQS AATILSSSAL ETTSSNANML KDLQPKSEVK PSLNISKIQN QGHFAPQTYL NGNAAHTDCL DTSSSTTSVC LSQSDAHMHQ NNNPLSYNPQ SLLFRDNNQD GEVQADARSN IPYANNIDSQ MGMPLNPDSL STKGTLRLGK DLSNNFSSEG MLGNYEINRD AQQEPSSSMV SQTFGVPDMA FNSIDSTIDD SNFLNSGPWA PPPAPPLPPL PPLPPAQFQR MRTYTKVYKR GAVGRSIDIT RYSGYEELKQ DLARRFGIEG QLEDRQRIGW KLVYVDHESD VLLLGDDPWE EFVNCVRCIK ILSPQEVQQM SLDGDFGNGG LPNQACSSSD GGDT // ID I1J6Q5_SOYBN Unreviewed; 384 AA. AC I1J6Q5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH75484.1, ECO:0000313|EnsemblPlants:GLYMA01G22260.1}; GN Name=LOC100776987 {ECO:0000313|EnsemblPlants:GLYMA01G22260.1}; GN ORFNames=GLYMA_01G087500 {ECO:0000313|EMBL:KRH75484.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G22260.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G22260.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G22260.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH75484.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH75484.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G22260.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G22260.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH75484.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH75484.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH75484.1; -; Genomic_DNA. DR RefSeq; XP_003516851.1; XM_003516803.3. DR UniGene; Gma.61527; -. DR STRING; 3847.GLYMA01G22260.1; -. DR EnsemblPlants; GLYMA01G22260.1; GLYMA01G22260.1; GLYMA01G22260. DR GeneID; 100776987; -. DR Gramene; GLYMA01G22260.1; GLYMA01G22260.1; GLYMA01G22260. DR KEGG; gmx:100776987; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; I1J6Q5; -. DR KO; K09287; -. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 131 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 205 316 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 131 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 205 316 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 384 AA; 41907 MW; C929164D943EEFCA CRC64; MDAISCLDES TTTESLSISQ AKPSSTIMSS EKASPSPPPP NRLCRVGSGA SAVVDSDGGG GGGSTEVESR KLPSSKYKGV VPQPNGRWGS QIYEKHQRVW LGTFNEEDEA ARAYDVAVQR FRGKDAVTNF KPLSGTDDDD GESEFLNSHS KSEIVDMLRK HTYNDELEQS KRSRGFVRRR GSAAGAGNGN SISGACVMKA REQLFQKAVT PSDVGKLNRL VIPKQHAEKH FPLQSAANGV SATATAAKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDTVCFQR STGPDRQLYI DWKTRNVVNE VALFGPVVEP IQMVRLFGVN ILKLPGSDSI ANNNNASGCC NGKRREMELF SLECSKKPKI IGAL // ID I1JDW7_SOYBN Unreviewed; 401 AA. AC I1JDW7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH70603.1, ECO:0000313|EnsemblPlants:GLYMA02G11060.1}; GN Name=LOC100801107 {ECO:0000313|EnsemblPlants:GLYMA02G11060.1}; GN ORFNames=GLYMA_02G099500 {ECO:0000313|EMBL:KRH70603.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G11060.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G11060.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G11060.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH70603.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH70603.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G11060.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G11060.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH70603.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH70603.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH70603.1; -; Genomic_DNA. DR RefSeq; XP_003518682.1; XM_003518634.3. DR STRING; 3847.GLYMA02G11060.1; -. DR EnsemblPlants; GLYMA02G11060.1; GLYMA02G11060.1; GLYMA02G11060. DR GeneID; 100801107; -. DR Gramene; GLYMA02G11060.1; GLYMA02G11060.1; GLYMA02G11060. DR KEGG; gmx:100801107; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; I1JDW7; -. DR KO; K09287; -. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 137 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 210 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 137 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 210 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 43610 MW; 79DB6252D792B58F CRC64; MDAISCMDES TTTESLSISL SPTSSSEKAK PSSMITSSEK VSLSPPPSNR LCRVGSGASA VVDPDGGGSG AEVESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAARAY DIAAQRFRGK DAVTNFKPLA GADDDDGESE FLNSHSKPEI VDMLRKHTYN DELEQSKRSR GVVRRRGSAA AGTANSISGA CFTKAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS SNGVSATTIA AVTATPTAAK GVLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDTVCF HRSTGPDKQL YIDWKTRNVV NNEVALFGPV GPVVEPIQMV RLFGVNILKL PGSDTIVGNN NNASGCCNGK RREMELFSLE CSKKPKIIGA L // ID I1JGL1_SOYBN Unreviewed; 344 AA. AC I1JGL1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH72242.1, ECO:0000313|EnsemblPlants:GLYMA02G36090.1}; GN Name=LOC100818164 {ECO:0000313|EnsemblPlants:GLYMA02G36090.1}; GN ORFNames=GLYMA_02G200500 {ECO:0000313|EMBL:KRH72242.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G36090.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G36090.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G36090.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH72242.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72242.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G36090.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G36090.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH72242.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72242.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH72242.1; -; Genomic_DNA. DR RefSeq; XP_003518204.1; XM_003518156.3. DR EnsemblPlants; GLYMA02G36090.1; GLYMA02G36090.1; GLYMA02G36090. DR GeneID; 100818164; -. DR Gramene; GLYMA02G36090.1; GLYMA02G36090.1; GLYMA02G36090. DR KEGG; gmx:100818164; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; I1JGL1; -. DR OMA; AESDHAN; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 182 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 75 182 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 39080 MW; 3AE07901157E8B85 CRC64; MSTNHYTMDL PEPTLWWPHP HQQQLTLIDP DPLPLNLNND DNDNGDDNDN DENQTVTTTT TGGEEEIINN KEPMFEKPLT PSDVGKLNRL VIPKQHAEKY FPLSGGDSGS SECKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKDKRLDAGD VVLFQRHRAD AQRLFIGWRR RRQSDALPPP AHVSSRKSGG DGNSSKNEGD VGVGWTRGFY PAHHPYPTHH HHPSPYHHQQ DDSLHAVRGS QGQNQRTRPV GNSSSSSSSS SRVLRLFGVN MECQPEHDDS GPSTPQCSYN TNNILPSTQG TDIHSHLNFY QQQQTSNSKP PPHHMMIRHQ PYYY // ID I1JHN2_SOYBN Unreviewed; 348 AA. AC I1JHN2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40400.1}; GN Name=LOC100786265 {ECO:0000313|EnsemblPlants:GLYMA02G40400.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40400.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA02G40400.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA02G40400.1; GLYMA02G40400.1; GLYMA02G40400. DR Gramene; GLYMA02G40400.1; GLYMA02G40400.1; GLYMA02G40400. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR Proteomes; UP000008827; Chromosome 2. DR ExpressionAtlas; I1JHN2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39216 MW; 9D90E6F8A6A7F20D CRC64; MIKRDTEHPK FVVDSVYFFL SQVNIDLPPL RKRSRSSSSS WGSYIARPLD EIKEATKEER LCALEAAEAI QINLNSSNPS FIKSMVRSHV YSCFWLGLPS KFCEEHLPKT LHDMVLEDEN GSEYEAVYIG NRAGLSGGWR AFALDHKLDD GDALVFELIE ASRFKIYIVR AFPDSVEEKG NNILEEEGNV RATKAPKAAC NLESECKTKK PKQAAVYETK ESESSQEYLL DSSIDNEVKP QGVNPTNKET KFSQKNTPKK SKYPATADSK GKVQIKTEKP KASIKLSNNT RKSKEGINEI GGSDKLEKNE FVQDADSKLE KVELVEEARK CVTKKLEKTS SKFFRKKA // ID I1JHQ8_SOYBN Unreviewed; 847 AA. AC I1JHQ8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100780393 {ECO:0000313|EnsemblPlants:GLYMA02G40650.1}; GN ORFNames=GLYMA_02G239600 {ECO:0000313|EMBL:KRH72896.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40650.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40650.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40650.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH72896.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72896.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G40650.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40650.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH72896.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72896.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH72896.1; -; Genomic_DNA. DR RefSeq; XP_006575466.1; XM_006575403.2. DR STRING; 3847.GLYMA02G40650.1; -. DR EnsemblPlants; GLYMA02G40650.1; GLYMA02G40650.1; GLYMA02G40650. DR GeneID; 100780393; -. DR Gramene; GLYMA02G40650.1; GLYMA02G40650.1; GLYMA02G40650. DR KEGG; gmx:100780393; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1JHQ8; -. DR OMA; VVEHTNN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 721 805 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 847 AA; 94203 MW; B953F6BBAD580F23 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVAYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGVP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSFHDGRD EATNGLMWLR GGPGDQALNS LNFQGSGLLP WMQQRMDPTL LANDHNQHYQ AMFASGLQNL GSGDLMRQQI MNFQQPFNYL QQSGNPNPPL QLQQPQAIQQ SVSSNNILQP QAQVMAENLS QHLLQKSHNN REDQTQQQQQ QRHTYQDTVL LQSDQLHQRQ HSGLPSPSYS KPDFLDSSMK FPASVSPGQN ILGSLCPEGS GNLLNLSRSG QSMLTEQLPQ QSWAPKFTPL QVNAFGNSMQ HVQYSGKDTA MVPPHCNSDT QNPILFGVNI DSSGLLLPTT VPRYTTASAD SDASAMPLGE SGFQSPLYPC GQDSSELVQS AGQVDPQNQT RTFVKVYKSG SVGRSLDISR FSSYHELREE LAQMFGIEGK LEDPLRSGWQ LVFVDRENDV LLLGDDPWES FVNNVWYIKI LSPEDIHKMG EQALESLGPS PGQRLNSTGA DSHEIVSGLP SIGSLEY // ID I1JHQ9_SOYBN Unreviewed; 789 AA. AC I1JHQ9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100780393 {ECO:0000313|EnsemblPlants:GLYMA02G40650.2}; GN ORFNames=GLYMA_02G239600 {ECO:0000313|EMBL:KRH72900.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40650.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40650.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40650.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH72900.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72900.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G40650.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40650.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH72900.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72900.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH72900.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA02G40650.2; GLYMA02G40650.2; GLYMA02G40650. DR Gramene; GLYMA02G40650.2; GLYMA02G40650.2; GLYMA02G40650. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 721 789 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 789 AA; 87951 MW; F2F9E9AD1EE046C6 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVAYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGVP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSFHDGRD EATNGLMWLR GGPGDQALNS LNFQGSGLLP WMQQRMDPTL LANDHNQHYQ AMFASGLQNL GSGDLMRQQI MNFQQPFNYL QQSGNPNPPL QLQQPQAIQQ SVSSNNILQP QAQVMAENLS QHLLQKSHNN REDQTQQQQQ QRHTYQDTVL LQSDQLHQRQ HSGLPSPSYS KPDFLDSSMK FPASVSPGQN ILGSLCPEGS GNLLNLSRSG QSMLTEQLPQ QSWAPKFTPL QVNAFGNSMQ HVQYSGKDTA MVPPHCNSDT QNPILFGVNI DSSGLLLPTT VPRYTTASAD SDASAMPLGE SGFQSPLYPC GQDSSELVQS AGQVDPQNQT RTFVKVYKSG SVGRSLDISR FSSYHELREE LAQMFGIEGK LEDPLRSGWQ LVFVDRENDV LLLGDDPWE // ID I1JIZ7_SOYBN Unreviewed; 896 AA. AC I1JIZ7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100809105 {ECO:0000313|EnsemblPlants:GLYMA02G45100.1}; GN ORFNames=GLYMA_02G281700 {ECO:0000313|EMBL:KRH73577.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G45100.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G45100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G45100.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH73577.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH73577.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G45100.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G45100.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH73577.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH73577.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH73577.1; -; Genomic_DNA. DR EMBL; CM000835; KRH73578.1; -; Genomic_DNA. DR RefSeq; XP_003519519.1; XM_003519471.3. DR STRING; 3847.GLYMA02G45100.1; -. DR EnsemblPlants; GLYMA02G45100.1; GLYMA02G45100.1; GLYMA02G45100. DR GeneID; 100809105; -. DR Gramene; GLYMA02G45100.1; GLYMA02G45100.1; GLYMA02G45100. DR KEGG; gmx:100809105; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1JIZ7; -. DR OMA; YMSRQDL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 760 846 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 896 AA; 98953 MW; 95810E7D2FCDB928 CRC64; MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFAI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL GVTPWMQPRL DPSIPGLQPE LYQAITSSAF QEMRTMDLSK SSQSLLQFQQ TSNVPSAHAS EVQRQLLPQS QLQNTLLHNF QENQVPAQSQ LLQQQLHRYH PYSDQQQQQQ QLKNLPVQQQ LPNVISPMSK FASGTQSQSP PMQALASHCQ QQSFPEPMRN HISGSDVSPI QSLLGSFSQD GTSQLLNLSG SNSVMSSAAI LPKQITAEPP QLPSAASQCI LPQVENLGTS QSNVSELAAL PPFPGREHSA YHGAADPQSN LLFGINIDPS SLMLQSGMSN LRNIGKVNDS LSLPFSTSNC GGATGTDFPL SSNMTTSSCV DESGFLQCSE NVDQANIPTG TFVKVHKSGS FGRSLDISKF SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKVLSPSTSA PGDKLSTPVN SCDNYVSQQE LRSSRNGMAS MGSFHY // ID I1JM14_SOYBN Unreviewed; 691 AA. AC I1JM14; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100779003 {ECO:0000313|EnsemblPlants:GLYMA03G17450.1}; GN ORFNames=GLYMA_03G070500 {ECO:0000313|EMBL:KRH65922.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G17450.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G17450.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G17450.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH65922.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH65922.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G17450.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G17450.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH65922.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH65922.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH65922.1; -; Genomic_DNA. DR RefSeq; XP_003520962.1; XM_003520914.3. DR UniGene; Gma.26034; -. DR STRING; 3847.GLYMA03G17450.1; -. DR EnsemblPlants; GLYMA03G17450.1; GLYMA03G17450.1; GLYMA03G17450. DR GeneID; 100779003; -. DR Gramene; GLYMA03G17450.1; GLYMA03G17450.1; GLYMA03G17450. DR KEGG; gmx:100779003; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; I1JM14; -. DR KO; K14486; -. DR OMA; EAMNNKF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 580 661 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 76833 MW; F99621224B4E7EAC CRC64; MLSRAANGEV AGSGYSGEDE MYEPLWKGCA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESNQDEPMN PDPCTAEPPR APVHSFSKVL TASDTSTHGG FSVLRKHAME CLPALDMSQP TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIISVNKY LEAMNRFSVG MRLKMRFEGD DSAETDKRFS GTIVGVEDIS PHWVNSKWRS LKVQWDEPAA VPRPDRVSPW EIEPFVASAS TPSVQPTMVK TKRPRPPSET PDVDTTSAAS VFWDAGLQQA DMAQKNVLAE SKRNDSTGTW HHMQTDMNSK SNSGNAMLRN QTEGSWLSSP HSSCPSHLFQ DATDDSKSVS AWPVSKPHSS RLNNDHVLDQ VDKESKVETA TSYRLFGIDL IDHSRNSPSV EKASAQAGNA PKVTTEGCTS TLTRTDAGHL SDVPMASSKE RKQEQQQVSP KETQSKQICR SRTKVQMQGV AVGRAVDLTM LDGYDQLINE LEEMFDIKGQ LQHRNKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS SQDVKKMSCG SKLPISSVED GTVISSDTTE T // ID I1JQG4_SOYBN Unreviewed; 590 AA. AC I1JQG4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100776512 {ECO:0000313|EnsemblPlants:GLYMA03G36710.1}; GN ORFNames=GLYMA_03G208800 {ECO:0000313|EMBL:KRH68102.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G36710.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G36710.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G36710.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH68102.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68102.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G36710.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G36710.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH68102.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68102.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH68102.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA03G36710.1; GLYMA03G36710.1; GLYMA03G36710. DR Gramene; GLYMA03G36710.1; GLYMA03G36710.1; GLYMA03G36710. DR eggNOG; ENOG410JAV5; Eukaryota. DR eggNOG; ENOG41113VQ; LUCA. DR OMA; RDENDAP; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 494 576 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 49 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 590 AA; 65328 MW; 1125BDCDC1E54FFE CRC64; MNVELKAEAY SDEVYAQVTL VPEVQKDNLC FEEEVNIDQI PSRNAAYSFS KILTPSDTST HGGFSVPKKY ADECFPPLDM TLQTPAQEIV AKDLNGFEWR FRHIYRGQPK RHLLTSGWSL FVNAKKLVAG DSCIFVRGES GELRVGIRRA AENLSNISQS SSLISGHSMQ LGILTNASNA VGNRTMFLVY YRPWTNPFEF IVHLQTYLKS TLQDYPIGTR VQMQHEVEES LRRLAGTIIG NEDIDSIRWP GSAWRRLKVQ WDAIVEDKMH PERVCPWWIE PLESAKEKKQ VPALPTKKKG HALLNQRSLP GISGFGKNDV HQNSAGPSSQ TRRADGDLQG QDYSGLSPPQ PLQRAPSTDI IRPSKVPIRG SRFGKENRNQ HPFLKQDPLH KSLGRSMSLT HEDLSITSSN LTSIGSESLG MPSTESRDEN DAPFGQPGSS STFKLFGVNL IDSSPEIPSV NFVDLNKTSS LPSSPPMGVA PGKTCKKCRC VNNRSCTKVL KLGNALGRAV DLARFNGYTE LIAELDSMFD FQGTLISGGS GWHVTCLDDE GDMMQLGDYP WQDFLGVVQK MIICPKEGTD NLKPGSSANP // ID I1JTI3_SOYBN Unreviewed; 228 AA. AC I1JTI3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH61270.1, ECO:0000313|EnsemblPlants:GLYMA04G04030.1}; GN Name=LOC100797091 {ECO:0000313|EnsemblPlants:GLYMA04G04030.1}; GN ORFNames=GLYMA_04G037800 {ECO:0000313|EMBL:KRH61270.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA04G04030.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA04G04030.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G04030.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH61270.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH61270.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA04G04030.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G04030.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH61270.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH61270.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000837; KRH61270.1; -; Genomic_DNA. DR RefSeq; XP_003523918.1; XM_003523870.3. DR EnsemblPlants; GLYMA04G04030.1; GLYMA04G04030.1; GLYMA04G04030. DR EnsemblPlants; GLYMA04G04030.2; GLYMA04G04030.2; GLYMA04G04030. DR GeneID; 100797091; -. DR Gramene; GLYMA04G04030.1; GLYMA04G04030.1; GLYMA04G04030. DR Gramene; GLYMA04G04030.2; GLYMA04G04030.2; GLYMA04G04030. DR KEGG; gmx:100797091; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000008827; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 25764 MW; A353D6871710F91F CRC64; MVAAIAYEES RRKRVEENRK RMEALNLPLL SQALHKSPSP KSSPLKQVKN RTIQKELVVV RRSSRVANLP TPVYKEVVVD RVTIPRRTLG RPYNRHRDYA NRVYASDEAR EEALEKAETL MSGLESEHPA FIKSMLQSHI SGGFWLGLPV HFCKSNLPKG DEVMTLIDED GNEYPTIYLA RKTGLSGGWK GFAVGHDLAD GDAVIFQLIK HTAFKVYIIR ANSPPEDK // ID I1JXG1_SOYBN Unreviewed; 613 AA. AC I1JXG1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH63710.1, ECO:0000313|EnsemblPlants:GLYMA04G36750.1}; GN ORFNames=GLYMA_04G192400 {ECO:0000313|EMBL:KRH63710.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA04G36750.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA04G36750.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G36750.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH63710.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH63710.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA04G36750.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G36750.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH63710.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH63710.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000837; KRH63710.1; -; Genomic_DNA. DR RefSeq; XP_006578683.1; XM_006578620.2. DR RefSeq; XP_006578684.1; XM_006578621.2. DR EnsemblPlants; GLYMA04G36750.1; GLYMA04G36750.1; GLYMA04G36750. DR GeneID; 102661564; -. DR Gramene; GLYMA04G36750.1; GLYMA04G36750.1; GLYMA04G36750. DR KEGG; gmx:102661564; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; I1JXG1; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000008827; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 613 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 549 613 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 613 AA; 69015 MW; AB846034D72934D7 CRC64; MCGERQRVSA CAACTNNCLL FHKTKQTSPT SFFKLITKRE HLTTLYIPPA FSSTVSDLVN KKIALNDSSE RQWNVKVSGF NGSFAFMEGW STFSLNHGVK VGYLLVFNYV KDLHFDVKIY DPSACEKLNF PKTRNQKKRS RGRSGSPVRD CMLVGQESNA LVVTQHYVPK MKSQRSEVDL VVRKNGEESG QLMCISELHE DPCYSTSLEF DQSHGVNGTM KIVNGDLKVS NVDYGSHIFE NDAIVCSKDT MFEGIFSMAA ALDISEFEMS GRSTSLGEAD KSTHDKTSTL NIEENKESKA IMYSGEAQEC QFSNVLESDQ AAISKKEPAL HIDGSCNTKN KFNEISNHLD TYIHNGEMKK LPVDKTPKLY SSVDKLNVTG LPKETKGKLD HYSDPFNQDN ESHFKTAPPL MSNGEAQECQ FSEGLESDQA AISKKEPALH ICGFSDTKQN FDGISNDLDG HIYNGEMKKL PMDMTPKLCG SMDKLNITEL PKEIKDSDIS NQDDESHFKT APPLSCVVTN DNDNVSLKLP EYLPLTRRVK PFTHKKMVVL LRDSQMRLWP VFYHEQPRLL THGWLDFSRA NNIQPEDECI FEVEPDPESR YQRILAVSIV HKS // ID I1JXQ2_SOYBN Unreviewed; 843 AA. AC I1JXQ2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100797082 {ECO:0000313|EnsemblPlants:GLYMA04G37760.1}; GN ORFNames=GLYMA_04G200600 {ECO:0000313|EMBL:KRH63855.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA04G37760.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA04G37760.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G37760.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH63855.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH63855.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA04G37760.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G37760.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH63855.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH63855.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000837; KRH63855.1; -; Genomic_DNA. DR RefSeq; XP_003523174.1; XM_003523126.3. DR UniGene; Gma.59482; -. DR STRING; 3847.GLYMA04G37760.1; -. DR EnsemblPlants; GLYMA04G37760.1; GLYMA04G37760.1; GLYMA04G37760. DR GeneID; 100797082; -. DR Gramene; GLYMA04G37760.1; GLYMA04G37760.1; GLYMA04G37760. DR KEGG; gmx:100797082; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; I1JXQ2; -. DR OMA; HESAYTD; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 795 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93885 MW; FDD8EF6301C19837 CRC64; MTSLEVTMKG NCLNHNDGGA TEPHSPSTAK DAEAALFREL WHACAGPLVT VPRERERVFY FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELVAKDLHAN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AISTGTIFTV YYKPRTSPAE FIVPYDQYME SLKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPKR WRDSKWRCLK VRWDETSNTP RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAVPSSPD SSVLTREASS KVSIDPSPAN GFPRVLQGQE FSTLRGNFAE SNESDTAEKS VVWPPAAVDD EKMDVSTSRR YGSESWMSMG RNEPTYSDLL SGFGASGDPS HLSLKDQMSP AYSARKQSLD HEGKLHMPHP WPVMPSSLSL SILDSNTKGP AHGGDTTYKA RGNLRYSAFG EYPALHGHKV EHSHGNLMPP PPALLTQYQS PCSRELMSKQ VSAKTCEAVK PKDGDCKLFG FSLISGPTLP EPSLSQRNVS EAADQMHLTA HQQRTSENDE KLDHSKGSRP VDDIVVDDQD RPLRTSQLHT KDVQAKPLSG SARSCTKVHK KGIALGRSVD LTKYSGYDEL VAELDQLFEF GGELLSTKKD WLIVFTDNEG DMMLVGDDPW QEFCAMVRKI YIYPKEEIQK MSPGTLSSKN EENHSVTASE GADTKDVKCQ PHQKFNSENG LDA // ID I1JZB4_SOYBN Unreviewed; 562 AA. AC I1JZB4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=GLYMA_04G254200 {ECO:0000313|EMBL:KRH64757.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA04G43350.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA04G43350.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G43350.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH64757.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH64757.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA04G43350.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G43350.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH64757.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH64757.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000837; KRH64757.1; -; Genomic_DNA. DR RefSeq; XP_006578990.1; XM_006578927.2. DR STRING; 3847.GLYMA04G43350.1; -. DR EnsemblPlants; GLYMA04G43350.1; GLYMA04G43350.1; GLYMA04G43350. DR GeneID; 102662128; -. DR Gramene; GLYMA04G43350.1; GLYMA04G43350.1; GLYMA04G43350. DR KEGG; gmx:102662128; -. DR eggNOG; ENOG410IJN8; Eukaryota. DR eggNOG; ENOG410ZJKK; LUCA. DR InParanoid; I1JZB4; -. DR OMA; IDPKIWR; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000008827; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 235 264 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 562 AA; 61210 MW; 37C4DEE05EB30CA8 CRC64; MPRQPPPSPP SQPGVLDPAL WLVCAGTTVE IPTLHSRVYY FPQGHFDQAS SAPRNLSPLL LSKPAVLCRV ESVQFLADPL TDEVFAKLIL HPVADCFASG PSAVAPAAAS ASAQTGENNV VSFSKVLTAS DANNGGGFSV PRFCADSIFP PLNFQADPPV QNLLVTDVHG FVWEFRHIYR GTPRRHLLTT GWSTFVNNKK LVAGDVVVFM KNSGGGLFVG IRRATRFSMG KGGDRGGMRI RVDEEEEEEE EEEEEEEVRE VFSRDGRGKL SAKVVAEAAE LAARNMPFEV VYYPKERWSE FVVKTEAVNE AMKVAWSPGI RVKIAAETDD SSRVSWCQGT VSSVALHGNG QWRGSLWRML QVTWDEPEGL QIAKWVSPWQ VELVSTTPAL HSAFPPIKRI KAAHDSGVFT NGERDPFPMT GFTNSTMGQL NQALLSYGTF PAGMQGARHD AFSASRFCNY PTDMSRLCMG NSFGKSTFPW LKTLETEVNV GSSQSDELSP DSRGSLQSCG TDLVGNSRKL GSVSFQLFGA VIQTEQPVEN GLQGTGCTCT GDECQCQRAL NS // ID I1K3I1_SOYBN Unreviewed; 793 AA. AC I1K3I1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100777789 {ECO:0000313|EnsemblPlants:GLYMA05G27580.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA05G27580.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA05G27580.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G27580.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA05G27580.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G27580.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3847.GLYMA05G27580.1; -. DR EnsemblPlants; GLYMA05G27580.1; GLYMA05G27580.1; GLYMA05G27580. DR Gramene; GLYMA05G27580.1; GLYMA05G27580.1; GLYMA05G27580. DR InParanoid; I1K3I1; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 5. DR ExpressionAtlas; I1K3I1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 725 793 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 87976 MW; 5C560C5BA54AB3D7 CRC64; MKLSSSGFSS PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NVTMHADTET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPF AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHDMYQA MAAAALQDMW TSDPSKQHPT SAIQFQQQQN FPNRTSALMQ TQMLQQSQPQ QAFPNSQENS HPSPSPSQSQ AQTQTHFQQH LQHQHSFNTQ NQHNLLQQQQ QSQLQQQQVV DHQQISSAVS TMSQFVSAPQ SQSPPMQAIS SLGHQQSFSD SNGNPVTTAV VSPLHSILGS FPQDDTSHLL NLPRSTSWVP VQHSTAWPSS KRVAVDPLFS SGASQCVLPQ VEQLGQPQST MAQNGIALPP FPGRECTIEG SNDPQNHLLF GVNIEPSSLL MHNGMSSLKG VSSNSDSPTI PFQSSNYLNT TVPDSSLNPG MTHNIGESGF LQTPENGGQG NPTNKTFVKV YKSGSFGRSL DITKFTSYPE LRSELARMFG LEGELEDPVR SGWQLVFVDQ ENDVLLLGDG PWP // ID I1K651_SOYBN Unreviewed; 1099 AA. AC I1K651; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100803302 {ECO:0000313|EnsemblPlants:GLYMA05G36430.1}; GN ORFNames=GLYMA_05G221300 {ECO:0000313|EMBL:KRH60117.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA05G36430.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA05G36430.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G36430.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH60117.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH60117.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA05G36430.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G36430.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH60117.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH60117.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000838; KRH60117.1; -; Genomic_DNA. DR RefSeq; XP_003524425.1; XM_003524377.3. DR STRING; 3847.GLYMA05G36430.1; -. DR EnsemblPlants; GLYMA05G36430.1; GLYMA05G36430.1; GLYMA05G36430. DR GeneID; 100803302; -. DR Gramene; GLYMA05G36430.1; GLYMA05G36430.1; GLYMA05G36430. DR KEGG; gmx:100803302; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1K651; -. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000008827; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 987 1071 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1099 AA; 120829 MW; D58AEC59ABEE0E67 CRC64; MKAQPPDGAA AVAPNAGEGG EKKTINAELW QACAGPLLNL PSPGTHVVYF PQGHSEQVAA SLKKDVDAQV PNYTNLPSKI PCLLHNVTLH ADPDTDEVYA QMTLQPVPSF DTDALLRSDI FLRSSKPQPE FFCKQLTASD TSTHGGFSVP RRAAEKIFPP LDYSVQPPAQ ELVARDLHDN VWRFRHIYRG QPKRHLLTTG WSLFIGGKRL LAGDSVLFVR DEKQQLLLGI RRANRQPSNL SSSVLSSDSM HIGVLAAAAQ AVANNSPFTV FYNPRASPSE FVIPLAKYSK AVYSHHISPG MRFRMMFETE DSGTRRYMGT IIGVSDLDSV RWKNSLWRNL QVGWDESTAE ERQSRVSVWE IEPVTTPYFI CPPPFFRSKI PRLLGMPDDE PDFNNLFKST VPWLGDDMCV KGPQALPGLS LVQWMNIQQN PALASSLQPN CGPSMSGLVL QNLPGADIAN PLGFSTSQIS QSNNVSVDAQ NILQTSQQLD HIQKPPCPSS ALGAVTQPLQ QLGDITQQPR NLTNQTLPHD QAHTQLLNPQ RVVQTNNIHQ QQQSSIQKQQ LLRSLSQNRA QKHQQTTLGL NERQIVFQSP MPDHFNQQLQ MSDNQVRFQL LQKLQQQQQT LLAQQSALQQ PALIQIQDQQ RQLLDVANNS SSPIPGQVLE NLPTLQNSLP EANSITHQIT MPSSQKNFHY SHLSQQPALL SEMSGHVGLP PTVTTNPLSA SGGSILTGVG QSVITDDVPS CSTSPSTNNR ASVLPPVVSS QIHRSTTIGD DMAQSAVTIS GASTLETMSS NANIVQPKYE VKASLNISKN QNQGNVAPQT YLNGVVQTDY LDSSSSTTSL YHFRSDTHMH QNTNPFSYNP QLVYCRDNSQ NVEVQADARN NVLIGNNVNG QMGMPSNLDS LLTKGTVGLG KELSNKFASG GLLRDLENNK GVPPEISSSM VSQTFEVPDM SFNSIDSTID GSSFLNRGPW DLPPPPPPQQ QQVQRIRTYT KVYKRGAVGR SIDITRYSGY EDLKQDLALR FGIEGQLEDL QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGNGGLPYPA GSSSDGGNA // ID I1K6T1_SOYBN Unreviewed; 858 AA. AC I1K6T1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 43. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100815956 {ECO:0000313|EnsemblPlants:GLYMA05G38540.4}; GN ORFNames=GLYMA_05G200800 {ECO:0000313|EMBL:KRH59742.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA05G38540.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA05G38540.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G38540.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH59742.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH59742.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA05G38540.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G38540.4}; RG EnsemblPlants; RL Submitted (NOV-2012) to UniProtKB. RN [4] {ECO:0000313|EnsemblPlants:GLYMA05G38540.5} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G38540.5}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EMBL:KRH59742.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH59742.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000838; KRH59742.1; -; Genomic_DNA. DR EMBL; CM000838; KRH59743.1; -; Genomic_DNA. DR RefSeq; XP_003525433.1; XM_003525385.3. DR STRING; 3847.GLYMA05G38540.4; -. DR EnsemblPlants; GLYMA05G38540.4; GLYMA05G38540.4; GLYMA05G38540. DR EnsemblPlants; GLYMA05G38540.5; GLYMA05G38540.5; GLYMA05G38540. DR GeneID; 100815956; -. DR Gramene; GLYMA05G38540.4; GLYMA05G38540.4; GLYMA05G38540. DR Gramene; GLYMA05G38540.5; GLYMA05G38540.5; GLYMA05G38540. DR KEGG; gmx:100815956; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 734 816 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 858 AA; 94845 MW; FA2720F21E1CB705 CRC64; MATSEVSIKG NSVNGKGDNS SGGYTNDVRN GSGGGEARNS SSSSSSARDA EAALYRELWH ACAGPLVTVP REGERVFYFP QGHIEQVEAS TNQVAEQHMP VYDLPPKILC RVINVMLKAE PDTDEVFAQV TLLPEPNQDE NAVEKEGPPA APPRFHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MTKQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI LTGTMFTVYY KPRTSPAEFI VPYDQYMESL KNNYTIGMRF KMRFEGEEAP EQRFTGTIVG IEDADTKRWP KSKWRSLKVR WDETSNIPRP ERVSQWKIEP ALAPPALNPL PMPRPKRPRS NVVPSSPDSS VLTREASSKV SVDPLPTSGF QRVLQGQELS TLRGNFAESN ESDTVEKSAV WPPVADDEKI DVSTSRRYGS DSWMSMGRHE LTYPDLLSGF GTHGDHSSHP SFVDQNGPVA NVGRKHLLDC EGKHNVLSPW SGVPSSLSLN LLDSNTKGSA QGGDTTYQVR GNLRYSSAFG EYPMLHGHKV EHSHGNFLMP PPPSTPYESP RSRELLPKPI SGKPCEVSKP KDSDCKLFGI SLLSSPIAPE PSVSQRNVPS EPVGHMHTTS HQQRAFDNDQ KSEHSRGGSK PADGLLIDDH EKVLQTSQTH LKDIQAKSHS GSARSCTKVH KKGIALGRSV DLTKFSDYGE LIAELDQLFE FGGLLTSPQK DWLIVYTDNE GDMMLVGDDP WQEFVAMVRK IYIYPKEEIQ KMSPGTLSSK NEENQSASEG ATDTQEIKCQ LNNSASDT // ID I1K6T2_SOYBN Unreviewed; 802 AA. AC I1K6T2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100815956 {ECO:0000313|EnsemblPlants:GLYMA05G38540.3}; GN ORFNames=GLYMA_05G200800 {ECO:0000313|EMBL:KRH59744.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA05G38540.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA05G38540.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G38540.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH59744.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH59744.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA05G38540.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA05G38540.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH59744.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH59744.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000838; KRH59744.1; -; Genomic_DNA. DR EMBL; CM000838; KRH59745.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA05G38540.3; GLYMA05G38540.3; GLYMA05G38540. DR Gramene; GLYMA05G38540.3; GLYMA05G38540.3; GLYMA05G38540. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000008827; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 734 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 802 AA; 88622 MW; 5856A2D73EA2FD1A CRC64; MATSEVSIKG NSVNGKGDNS SGGYTNDVRN GSGGGEARNS SSSSSSARDA EAALYRELWH ACAGPLVTVP REGERVFYFP QGHIEQVEAS TNQVAEQHMP VYDLPPKILC RVINVMLKAE PDTDEVFAQV TLLPEPNQDE NAVEKEGPPA APPRFHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MTKQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI LTGTMFTVYY KPRTSPAEFI VPYDQYMESL KNNYTIGMRF KMRFEGEEAP EQRFTGTIVG IEDADTKRWP KSKWRSLKVR WDETSNIPRP ERVSQWKIEP ALAPPALNPL PMPRPKRPRS NVVPSSPDSS VLTREASSKV SVDPLPTSGF QRVLQGQELS TLRGNFAESN ESDTVEKSAV WPPVADDEKI DVSTSRRYGS DSWMSMGRHE LTYPDLLSGF GTHGDHSSHP SFVDQNGPVA NVGRKHLLDC EGKHNVLSPW SGVPSSLSLN LLDSNTKGSA QGGDTTYQVR GNLRYSSAFG EYPMLHGHKV EHSHGNFLMP PPPSTPYESP RSRELLPKPI SGKPCEVSKP KDSDCKLFGI SLLSSPIAPE PSVSQRNVPS EPVGHMHTTS HQQRAFDNDQ KSEHSRGGSK PADGLLIDDH EKVLQTSQTH LKDIQAKSHS GSARSCTKVH KKGIALGRSV DLTKFSDYGE LIAELDQLFE FGGLLTSPQK DWLIVYTDNE GDMMLVGDDP WQ // ID I1KA35_SOYBN Unreviewed; 197 AA. AC I1KA35; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA06G11320.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA06G11320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G11320.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA06G11320.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G11320.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA06G11320.1; GLYMA06G11320.1; GLYMA06G11320. DR Gramene; GLYMA06G11320.1; GLYMA06G11320.1; GLYMA06G11320. DR InParanoid; I1KA35; -. DR OMA; LANCAKA; -. DR OrthoDB; \N; -. DR Proteomes; UP000008827; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 197 AA; 21852 MW; C8270E7A742365DB CRC64; DTSTCIFPPL NFPADPPVQN LLVTDVHGFV WEFRHIYRGT PRRHLLTTGW STFVNNKKLV AGDAVVFMKN SRGGLLVGIR RTTRFSPGKG GDVGTRIKVD EEEEEEEEVR EVFSRDGRGK LSAKVVAEAA ELAARSMPFE VVYYPKGGWS EFVVKTEAVN EAMSVEWSHG MKVKIATETD DSSRVSWCQG TVGNSGK // ID I1KBY0_SOYBN Unreviewed; 843 AA. AC I1KBY0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100803498 {ECO:0000313|EnsemblPlants:GLYMA06G17320.1}; GN ORFNames=GLYMA_06G164900 {ECO:0000313|EMBL:KRH54110.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA06G17320.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA06G17320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G17320.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH54110.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH54110.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA06G17320.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G17320.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH54110.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH54110.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000839; KRH54110.1; -; Genomic_DNA. DR RefSeq; XP_003526928.1; XM_003526880.3. DR STRING; 3847.GLYMA06G17320.1; -. DR EnsemblPlants; GLYMA06G17320.1; GLYMA06G17320.1; GLYMA06G17320. DR GeneID; 100803498; -. DR Gramene; GLYMA06G17320.1; GLYMA06G17320.1; GLYMA06G17320. DR KEGG; gmx:100803498; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; I1KBY0; -. DR OMA; STMAAIH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 795 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93667 MW; FA8DF8F25F760BBB CRC64; MASSEVTMKG NCLNHNDGGA TEPHSPSTAK DAEAALFREL WHACAGPLVT VPREKERVFY FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELVAKDLHAN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AILTGTIFTV YYKPRTSPAE FIVPYDQYME SLKNSYSIGM RFKMRFEGEE APEQRFTGTV VGIEDSDPKR WRDSKWRCLK VRWDETSNTP RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAVPSSPD SSVLTREASS KVSIDPSPAN GFPRVLQGQE FSTLRGNFTE SNEFDTAEKS VVWPPTAVDD EKMDVSTSRK YGSESWMSMG RNEPTYSDLL SGFGTSGDPS HSSLKDQMSP AYSARKQSLD HEGKLHMPHP WPVMPSSLSL NILDSNAKGP THGGDTSFQA RGNLRFSAFG EYPALHGHKV EDSHGNLMPP PPAPQTQYQS PCSRELMSKH VSAKTCEAVK PKDGDCKLFG FSLISGPIVP EPSLSQRNVS EPAGQMHLTA HQQRTSENDE KSDHSKGSRP VDDLVVDDHD RPLQTSQSHT KDVQAKPLSG SARSCTKVHK KGIALGRSVD LTKYSGYDEL VAELDQLFEF GGELLSTKKD WLIVYTDNEG DMMLVGDDPW QEFCAMVCKI YIYPKEEIQK MSPGTLSSKN EENQSVMASD GADAKVVKCQ PHQKFNSENG LDA // ID I1KBY1_SOYBN Unreviewed; 781 AA. AC I1KBY1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100803498 {ECO:0000313|EnsemblPlants:GLYMA06G17320.2}; GN ORFNames=GLYMA_06G164900 {ECO:0000313|EMBL:KRH54111.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA06G17320.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA06G17320.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G17320.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH54111.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH54111.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA06G17320.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G17320.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH54111.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH54111.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000839; KRH54111.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA06G17320.2; GLYMA06G17320.2; GLYMA06G17320. DR Gramene; GLYMA06G17320.2; GLYMA06G17320.2; GLYMA06G17320. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000008827; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 781 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 781 AA; 86816 MW; 3EAB149FDD173B77 CRC64; MASSEVTMKG NCLNHNDGGA TEPHSPSTAK DAEAALFREL WHACAGPLVT VPREKERVFY FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELVAKDLHAN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AILTGTIFTV YYKPRTSPAE FIVPYDQYME SLKNSYSIGM RFKMRFEGEE APEQRFTGTV VGIEDSDPKR WRDSKWRCLK VRWDETSNTP RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAVPSSPD SSVLTREASS KVSIDPSPAN GFPRVLQGQE FSTLRGNFTE SNEFDTAEKS VVWPPTAVDD EKMDVSTSRK YGSESWMSMG RNEPTYSDLL SGFGTSGDPS HSSLKDQMSP AYSARKQSLD HEGKLHMPHP WPVMPSSLSL NILDSNAKGP THGGDTSFQA RGNLRFSAFG EYPALHGHKV EDSHGNLMPP PPAPQTQYQS PCSRELMSKH VSAKTCEAVK PKDGDCKLFG FSLISGPIVP EPSLSQRNVS EPAGQMHLTA HQQRTSENDE KSDHSKGSRP VDDLVVDDHD RPLQTSQSHT KDVQAKPLSG SARSCTKVHK KGIALGRSVD LTKYSGYDEL VAELDQLFEF GGELLSTKKD WLIVYTDNEG DMMLVGDDPW Q // ID I1KJW6_SOYBN Unreviewed; 1110 AA. AC I1KJW6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100790644 {ECO:0000313|EnsemblPlants:GLYMA07G15640.1}; GN ORFNames=GLYMA_07G130400 {ECO:0000313|EMBL:KRH49070.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G15640.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G15640.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G15640.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH49070.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49070.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G15640.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G15640.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH49070.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49070.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH49070.1; -; Genomic_DNA. DR RefSeq; XP_003529091.1; XM_003529043.3. DR STRING; 3847.GLYMA07G15640.1; -. DR EnsemblPlants; GLYMA07G15640.1; GLYMA07G15640.1; GLYMA07G15640. DR GeneID; 100790644; -. DR Gramene; GLYMA07G15640.1; GLYMA07G15640.1; GLYMA07G15640. DR KEGG; gmx:100790644; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1KJW6; -. DR OMA; AVYSHQI; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1110 AA; 122978 MW; F23557D2F374B2F2 CRC64; MKTTQQPEAP QGDPCEEKKK SINPELWQAC AGPLVNLPPS GTHVIYFPQG HSEQVAASLN KDPHSQIPNY PNLPSKLLCL LHNLTLLADP ETDEVYAQIT LQPVPSFDKD ALLRSDLALK SSKPQPDFFC KQLTASDTST HGGFSVPRRA ADKIFPPLDY SMQPPAQELV ARDLHDTVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QHLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRTSPSEFVI PLAKYYKSVY SHQPSLGMRF RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSLWEIEP VTAPFFICPP PFFRSKRPRQ PGMPDDELSD FDNIFKRTMP WLGDDMCMKD PQGLPGLSLA QWMNMQQNPA LANSLQPNYA PSLSGSILQN IPGADISRQL GFSAPQISQS DNVALNTQRL LQTAQQLDHL QKLPSTSSTL GTVLLPQQQL GDITQQPRQN LANQTIPQGQ VQSQLLHPQN MVQTNNILQQ QQPSIQNHQL HRSLSQNPSQ QQTTIGQNQP QNLIQSPMPD HVQQLQMSDN QIQLQLLQKL QQQKQTLLAQ QTALQQPTQL TQIQDQQRQL LDKTHNLSRA LTPGQVLEIP HIIQNSLPEA NSISNQMTKA NCQSNIQFSQ QPKLQQQQQP GMVSEMPGHM ALLPTATTNQ LSAGGSSIVT GAGGAGQSVI TDDVPSRSTS PSTNNCTNAL PQLINSRFPR STMVGDDMAH SAATILSSSA LETSSSNANM LKDLQPKFEV KPSLNISKIQ NQGHFAPHTY LNGNAAHTDC LDTSSSTTSV CLSQSDAHMN QNSNPLSYNR QSMLFRDNNQ DGEVQADARS NIPYANNIDS QIGMPLNPDS LLTKGTLRLG KYLSNNFSSE GMLGNYENNR DAQQELSSSM VSQTFGVPDM AFNSIDSTID DSNFLNSGPW APPPAPPPLP PAQFQRMRTY TKVYKRGAVG RSIDITRYSG YEELKKDLAR RFGIEGQLED RQRIGWKLVY VDHESDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFGNGGLQNQ ACSSSDGGNT // ID I1KJW7_SOYBN Unreviewed; 1107 AA. AC I1KJW7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100790644 {ECO:0000313|EnsemblPlants:GLYMA07G15640.2}; GN ORFNames=GLYMA_07G130400 {ECO:0000313|EMBL:KRH49072.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G15640.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G15640.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G15640.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH49072.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49072.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G15640.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G15640.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH49072.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49072.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH49072.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA07G15640.2; GLYMA07G15640.2; GLYMA07G15640. DR Gramene; GLYMA07G15640.2; GLYMA07G15640.2; GLYMA07G15640. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 995 1079 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1107 AA; 122565 MW; 2B41D18C8379E872 CRC64; MCVLTTIIIL VGAEKKKSIN PELWQACAGP LVNLPPSGTH VIYFPQGHSE QVAASLNKDP HSQIPNYPNL PSKLLCLLHN LTLLADPETD EVYAQITLQP VPSFDKDALL RSDLALKSSK PQPDFFCKQL TASDTSTHGG FSVPRRAADK IFPPLDYSMQ PPAQELVARD LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV LFIRDEKQHL LLGIRRANRQ PTNISSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRT SPSEFVIPLA KYYKSVYSHQ PSLGMRFRMM FETEDSGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGEKRSRV SLWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDELSDFDN IFKRTMPWLG DDMCMKDPQG LPGLSLAQWM NMQQNPALAN SLQPNYAPSL SGSILQNIPG ADISRQLGFS APQISQSDNV ALNTQRLLQT AQQLDHLQKL PSTSSTLGTV LLPQQQLGDI TQQPRQNLAN QTIPQGQVQS QLLHPQNMVQ TNNILQQQQP SIQNHQLHRS LSQNPSQQQT TIGQNQPQNL IQSPMPDHVQ QLQMSDNQIQ LQLLQKLQQQ KQTLLAQQTA LQQPTQLTQI QDQQRQLLDK THNLSRALTP GQVLEIPHII QNSLPEANSI SNQMTKANCQ SNIQFSQQPK LQQQQQPGMV SEMPGHMALL PTATTNQLSA GGSSIVTGAG GAGQSVITDD VPSRSTSPST NNCTNALPQL INSRFPRSTM VGDDMAHSAA TILSSSALET SSSNANMLKD LQPKFEVKPS LNISKIQNQG HFAPHTYLNG NAAHTDCLDT SSSTTSVCLS QSDAHMNQNS NPLSYNRQSM LFRDNNQDGE VQADARSNIP YANNIDSQIG MPLNPDSLLT KGTLRLGKYL SNNFSSEGML GNYENNRDAQ QELSSSMVSQ TFGVPDMAFN SIDSTIDDSN FLNSGPWAPP PAPPPLPPAQ FQRMRTYTKV YKRGAVGRSI DITRYSGYEE LKKDLARRFG IEGQLEDRQR IGWKLVYVDH ESDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG NGGLQNQACS SSDGGNT // ID I1KK13_SOYBN Unreviewed; 664 AA. AC I1KK13; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 43. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100799088 {ECO:0000313|EnsemblPlants:GLYMA07G16170.1}; GN ORFNames=GLYMA_07G134800 {ECO:0000313|EMBL:KRH49135.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G16170.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G16170.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G16170.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH49135.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49135.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G16170.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G16170.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH49135.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49135.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH49135.1; -; Genomic_DNA. DR RefSeq; XP_003529106.1; XM_003529058.3. DR STRING; 3847.GLYMA07G16170.1; -. DR EnsemblPlants; GLYMA07G16170.1; GLYMA07G16170.1; GLYMA07G16170. DR GeneID; 100799088; -. DR Gramene; GLYMA07G16170.1; GLYMA07G16170.1; GLYMA07G16170. DR KEGG; gmx:100799088; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; I1KK13; -. DR KO; K14486; -. DR OMA; EDISSHW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 554 635 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 74517 MW; C09F50BC41F39B02 CRC64; MSLNCGGCGG EEDELYEQLW KACAGPHVEV PRTGQRVFYF PQGHMEQLEV STNQELNQRI PLFKLSSKIL CRVVNVHLLA EQETDEVYAQ ITLVPESNQT EPTSPDPCPA ELPRPRVHSF CKVLTASDTS THGGFSVLRK HATECLPALD MSKSTPTQEL VAKDLQGFEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDTFVFLRGN NGELRVGVRR IAPLQSSMPS SVISSQSMHL GVLATASHAV ATQTLFVVYY KPRTSQFIVS VNKYLEAINQ KCNVGMRFKM RFEGDESPEN DKRFSGTILG VEDISPHWVN SNWRSLKVQW DEPASFPRPD RVSSWEIEHI LACVPTTSSQ PAVIKNKRPR QASEVPDLGD TPLAAPTFWD AGLTQCDMTQ LRVMTESKRS DSSSHMRHHN SKSNNNGISM NQTEASWLSS PQLYQDTTDD NKSILAWPIS KPHSERLNND HFLDQVDKNI NKVEAATSYR LFGIDLIDHA RNNSLSVENA SGVASECKTD VNHESDLSKA SKEWNQEQLL VSPKETQSKQ VCSRSCTKVQ MQGVAVGRAV DLTTLDGYDQ LVDELEKMFD IKGQLQHRNK WETVFTDDEG DMMLVGDDPW PEFCNMVKRI FICSSQDVHK LSSGSKLPIS SMGEIVISLN TTET // ID I1KKQ6_SOYBN Unreviewed; 437 AA. AC I1KKQ6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH49566.1, ECO:0000313|EnsemblPlants:GLYMA07G21160.1}; GN Name=LOC100806715 {ECO:0000313|EnsemblPlants:GLYMA07G21160.1}; GN ORFNames=GLYMA_07G163700 {ECO:0000313|EMBL:KRH49566.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G21160.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G21160.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G21160.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH49566.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49566.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G21160.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G21160.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH49566.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49566.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH49566.1; -; Genomic_DNA. DR RefSeq; XP_003529203.1; XM_003529155.3. DR EnsemblPlants; GLYMA07G21160.1; GLYMA07G21160.1; GLYMA07G21160. DR GeneID; 100806715; -. DR Gramene; GLYMA07G21160.1; GLYMA07G21160.1; GLYMA07G21160. DR KEGG; gmx:100806715; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 300 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 300 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 437 AA; 49583 MW; BAF7953DB050A83A CRC64; MPRPCFDKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWPI GLKKADNRIW FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAMRN HNEGSCFANY HHIFDEMEDV DSLGLSDLSP QYLTPGALQS KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL NRVNWGDGGS AFSLKDANSQ GNQSTRDIGV QFNAVEFKRS TEELKLRYSN SNEEAVNKTA KKKRKSEPYG EEPSGENEEE AEMRYRFYES ASARKRTVTA EERERAINAS KTFEPTNPFC RVVLRPSYLY RGCIMYLPST FAEKNLNGVS GFIKLQLSNG RQWSVRCLYR GGRAKLSQGW FEFTVENNLG EGDVCVFELL RMKEVVLQVT VFRVTEDAGL LNQLPMQQQQ QSPNISHTKL LNPHLQHRIS TTKLIRN // ID I1KNS1_SOYBN Unreviewed; 674 AA. AC I1KNS1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 43. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100815450 {ECO:0000313|EnsemblPlants:GLYMA07G40270.1}; GN ORFNames=GLYMA_07G272800 {ECO:0000313|EMBL:KRH51289.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G40270.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G40270.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G40270.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH51289.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH51289.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G40270.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G40270.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH51289.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH51289.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH51289.1; -; Genomic_DNA. DR RefSeq; XP_003528726.1; XM_003528678.3. DR STRING; 3847.GLYMA07G40270.1; -. DR EnsemblPlants; GLYMA07G40270.1; GLYMA07G40270.1; GLYMA07G40270. DR GeneID; 100815450; -. DR Gramene; GLYMA07G40270.1; GLYMA07G40270.1; GLYMA07G40270. DR KEGG; gmx:100815450; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR InParanoid; I1KNS1; -. DR KO; K14486; -. DR OMA; EIPERRF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 643 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 75123 MW; 89318F6E17F42A90 CRC64; MASTLKSGGI HTGAINDDLY KELWHACAGP LVTLPREGER VYYFPQGHME QLEASMYEGL EQQMPSFNLP SKILCKVVNV HLRAEPETDE VYAQITLLPE ADQSEVTSPD DPLPESPRVK IHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH GNEWHFRHIF RGQPKRHLLT TGWSVFVSSK KLAAGDAFIF LRGENGELRV GVRRVMRQQS NVPSSVISSH SMHLGVLATA SHAIATGTLF SVFYKPRTSR SEFIVSVNKY LEVQSHKLSV GMRFKMRFEG DEIPERRFSG TIVGVGDNKS SSVWPDSEWR SLKVQWDEPS SILRPDRVSS WELEPLVSTT LANSQPTQRN KRARPLILPS TMPDSSLQGI WKSSVESTSF SYCDPQQGRG LYPSPKFNSS ATNFIGFSGN SSVGSPSNKS IYWSNRMENN LESISAIALK EAGEKRQGTG NGCRLFGIQL LENSNAEGNL QTVTLSGRVG DDRSVPSLDA ESDQHSEPSN ANRSDIPSVS CDAEKSCLQS PQESQSKQIR SCTKVHMQGM AVGRAVDLTR FDGYEDLLRK LEDMFNIKTE LCGSLKKWQV VYTDNEDDMM MVGDDPWDEF CSVVRKIFIY TAEEVKKLSP KIRLPMNEKV NPSKQDSEAI VNPEDQSSNM GPSC // ID I1KP28_SOYBN Unreviewed; 851 AA. AC I1KP28; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100780892 {ECO:0000313|EnsemblPlants:GLYMA08G01100.1}; GN ORFNames=GLYMA_08G008100 {ECO:0000313|EMBL:KRH41062.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G01100.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G01100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G01100.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH41062.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH41062.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA08G01100.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G01100.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH41062.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH41062.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000841; KRH41062.1; -; Genomic_DNA. DR RefSeq; XP_003532359.1; XM_003532311.3. DR UniGene; Gma.58880; -. DR STRING; 3847.GLYMA08G01100.1; -. DR EnsemblPlants; GLYMA08G01100.1; GLYMA08G01100.1; GLYMA08G01100. DR GeneID; 100780892; -. DR Gramene; GLYMA08G01100.1; GLYMA08G01100.1; GLYMA08G01100. DR KEGG; gmx:100780892; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; I1KP28; -. DR OMA; ASSAENC; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 727 809 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 94422 MW; 4E67025FF19B19C3 CRC64; MATSEVSIKG NSVNGKGDNS SGDARNSGGE AQNASSSSSS ARDAEAALYR ELWHACAGPL VTVPRERERV FYFPQGHIEQ VEASTNQVAE QHMPVYDLPP KILCRVINVM LKAEPDTDEV FAQVTLLPEP NQDENAVEKE GPPAPPPRFH VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSKQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAILTGTMF TVYYKPRTSP AEFIVPYDQY MESLKNNYTI GMRFKMRFEG EEAPEQRFTG TIVGIEDADT KRWPKSKWRS LKVRWDETSN IPRPERVSQW KIEPALAPLA LNPLPMPRPK RPRSNVVPSS PDSSVLTREA SKVSVDPLPT SGFQRVLQGQ ELSTLRGNFA ESNESDTAEK SGVWPPATDD EKIDVSTSRR YGSDSWMSMG RHEPTYPDLL SGFGAHGDHS SHPSFVDQNG PVANLSRKHL LDREGKHNVL SPWPGVPSSL SLNLLDSNLK GSAQGGDTAY QVRGNLRYSS AFGEYPVLHG HKVEHSHRSF LMPPPPSTQY ESPRSRELLS KPISGKPCEV SKLKDSDCKL FGISLLSSRP IASEPSLSQR NVTSESVGHM HTASHHQRAI ENDQKSEHSR GSKPADGLLI DDHEKVLQTS QPHLKDVQAK SHSGSARSCT KVHKKGIALG RSVDLTKFSD YGELITELDQ LFEFGGELTS PQKDWLIVYT DNEGDMMLVG DDPWQEFVAM VRKIYIYPKE EIQKMSPGTL SSKNEENQSA SEGAADAQEI ECQLNHSSSD T // ID I1KP30_SOYBN Unreviewed; 650 AA. AC I1KP30; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100780892 {ECO:0000313|EnsemblPlants:GLYMA08G01100.3}; GN ORFNames=GLYMA_08G008100 {ECO:0000313|EMBL:KRH41063.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G01100.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G01100.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G01100.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH41063.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH41063.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA08G01100.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G01100.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH41063.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH41063.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000841; KRH41063.1; -; Genomic_DNA. DR UniGene; Gma.58880; -. DR EnsemblPlants; GLYMA08G01100.3; GLYMA08G01100.3; GLYMA08G01100. DR Gramene; GLYMA08G01100.3; GLYMA08G01100.3; GLYMA08G01100. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 55 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 526 608 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 55 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 650 AA; 72261 MW; A138B1584714F9A6 CRC64; MTDGRVELIS GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN VPSSVISSHS MHLGVLATAW HAILTGTMFT VYYKPRTSPA EFIVPYDQYM ESLKNNYTIG MRFKMRFEGE EAPEQRFTGT IVGIEDADTK RWPKSKWRSL KVRWDETSNI PRPERVSQWK IEPALAPLAL NPLPMPRPKR PRSNVVPSSP DSSVLTREAS KVSVDPLPTS GFQRVLQGQE LSTLRGNFAE SNESDTAEKS GVWPPATDDE KIDVSTSRRY GSDSWMSMGR HEPTYPDLLS GFGAHGDHSS HPSFVDQNGP VANLSRKHLL DREGKHNVLS PWPGVPSSLS LNLLDSNLKG SAQGGDTAYQ VRGNLRYSSA FGEYPVLHGH KVEHSHRSFL MPPPPSTQYE SPRSRELLSK PISGKPCEVS KLKDSDCKLF GISLLSSRPI ASEPSLSQRN VTSESVGHMH TASHHQRAIE NDQKSEHSRG SKPADGLLID DHEKVLQTSQ PHLKDVQAKS HSGSARSCTK VHKKGIALGR SVDLTKFSDY GELITELDQL FEFGGELTSP QKDWLIVYTD NEGDMMLVGD DPWQEFVAMV RKIYIYPKEE IQKMSPGTLS SKNEENQSAS EGAADAQEIE CQLNHSSSDT // ID I1KRX2_SOYBN Unreviewed; 905 AA. AC I1KRX2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100806203 {ECO:0000313|EnsemblPlants:GLYMA08G10550.1}; GN ORFNames=GLYMA_08G100100 {ECO:0000313|EMBL:KRH42603.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G10550.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G10550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G10550.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH42603.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH42603.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA08G10550.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G10550.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH42603.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH42603.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000841; KRH42603.1; -; Genomic_DNA. DR RefSeq; XP_006585093.1; XM_006585030.2. DR STRING; 3847.GLYMA08G10550.1; -. DR EnsemblPlants; GLYMA08G10550.1; GLYMA08G10550.1; GLYMA08G10550. DR GeneID; 100806203; -. DR Gramene; GLYMA08G10550.1; GLYMA08G10550.1; GLYMA08G10550. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1KRX2; -. DR OMA; HNIGETG; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 778 862 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 905 AA; 100355 MW; C1466ED80360425E CRC64; MKLSSPGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NLTMHADTET DEVYAQMTLQ PLNPQEQKGA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSIRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPLFHAGLKD DDFGINSSLM WLRDTDRGLP SLNFQGIGVS PWMQPRLDPS MVNYQSDMYQ AMAAAALQDM WTSNPSKQHP TSSIQFQQPQ NFPNQTSPLM QTQLLQQSPS QQAFPNSQEN PHPSPSQSQA QTQTHFQQHL QHQHSFNNQN QHHLLPQQQQ QPQQPQLQQQ QVVDHQQISS VVSTMSQFVS AAQSQSPPMQ AISSLGHQQS FSDSNGNPTT TAIVSPLHSI LDSFPQDDTS HLLSLPRSTS WVPVQHSTAW PPSKRVVVDP LLSSGASQCV LPQVEQLGQP HSTMAQNGIA LPAFPGRECT IEGSNDPQNH LLFGVNIEPS SLLMHNGMSS LKGVSSNSDS PTIPFQSSNY LNTTGPDSSL NPGMTHNIGE TGFLQTPENG GQGNPSNKTF VKVYKSGSFG RSLDITKFTS YPELRSELAR MFGLEGELED PVRSGWQLVF VDQENDVLLL GDGPWPEFVN SVGYIKILSP QEVQQMGNNE LELLNSVPIQ RLSNGVCEDP RNLSTGITTV GSLNY // ID I1KRX3_SOYBN Unreviewed; 904 AA. AC I1KRX3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100806203 {ECO:0000313|EnsemblPlants:GLYMA08G10550.2}; GN ORFNames=GLYMA_08G100100 {ECO:0000313|EMBL:KRH42602.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G10550.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G10550.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G10550.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH42602.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH42602.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA08G10550.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G10550.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH42602.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH42602.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000841; KRH42602.1; -; Genomic_DNA. DR RefSeq; XP_003531170.1; XM_003531122.3. DR EnsemblPlants; GLYMA08G10550.2; GLYMA08G10550.2; GLYMA08G10550. DR GeneID; 100806203; -. DR Gramene; GLYMA08G10550.2; GLYMA08G10550.2; GLYMA08G10550. DR KEGG; gmx:100806203; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 777 861 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 904 AA; 100284 MW; 3D8D972F09421B7B CRC64; MKLSSPGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NLTMHADTET DEVYAQMTLQ PLNPQEQKGA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDSIRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPLFHGLKDD DFGINSSLMW LRDTDRGLPS LNFQGIGVSP WMQPRLDPSM VNYQSDMYQA MAAAALQDMW TSNPSKQHPT SSIQFQQPQN FPNQTSPLMQ TQLLQQSPSQ QAFPNSQENP HPSPSQSQAQ TQTHFQQHLQ HQHSFNNQNQ HHLLPQQQQQ PQQPQLQQQQ VVDHQQISSV VSTMSQFVSA AQSQSPPMQA ISSLGHQQSF SDSNGNPTTT AIVSPLHSIL DSFPQDDTSH LLSLPRSTSW VPVQHSTAWP PSKRVVVDPL LSSGASQCVL PQVEQLGQPH STMAQNGIAL PAFPGRECTI EGSNDPQNHL LFGVNIEPSS LLMHNGMSSL KGVSSNSDSP TIPFQSSNYL NTTGPDSSLN PGMTHNIGET GFLQTPENGG QGNPSNKTFV KVYKSGSFGR SLDITKFTSY PELRSELARM FGLEGELEDP VRSGWQLVFV DQENDVLLLG DGPWPEFVNS VGYIKILSPQ EVQQMGNNEL ELLNSVPIQR LSNGVCEDPR NLSTGITTVG SLNY // ID I1KYP5_SOYBN Unreviewed; 285 AA. AC I1KYP5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH46518.1, ECO:0000313|EnsemblPlants:GLYMA08G44640.1}; GN ORFNames=GLYMA_08G339200 {ECO:0000313|EMBL:KRH46518.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G44640.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G44640.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G44640.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH46518.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH46518.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA08G44640.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G44640.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH46518.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH46518.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000841; KRH46518.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA08G44640.1; GLYMA08G44640.1; GLYMA08G44640. DR Gramene; GLYMA08G44640.1; GLYMA08G44640.1; GLYMA08G44640. DR eggNOG; ENOG410JQPS; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; I1KYP5; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32870 MW; 8B32FB9731031794 CRC64; MTSKLNHRDD GSNGDSASKP IHFLRIMHPD NLLQGKLRLP AEFVNKYGKH LSNTMFLKLP NGAEWRVNLE KRDGRVWFQE GWKKFVEHHS LAHGHLLVFK YDGTFHFHVL IFDPSANEID YPVNKANHKR VRISSEEIQP PTTCKTSGNK RSNSNLQDNA FHQKVRDHKG RYESPSEGKR NMEAAGSISF TVRMKSSSKQ HMYLPKDSLK GYIKGGEQYV KLLVGERSWR VKLVHYKNRS SCFFSANWPA FARENDLKEG DACWFQLLNS SDDIVMNVTI SREGH // ID I1KZD3_SOYBN Unreviewed; 734 AA. AC I1KZD3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH46808.1, ECO:0000313|EnsemblPlants:GLYMA08G47240.1}; GN Name=LOC100795226 {ECO:0000313|EnsemblPlants:GLYMA08G47240.1}; GN ORFNames=GLYMA_08G357600 {ECO:0000313|EMBL:KRH46808.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G47240.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G47240.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G47240.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH46808.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH46808.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA08G47240.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G47240.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH46808.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH46808.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000841; KRH46808.1; -; Genomic_DNA. DR STRING; 3847.GLYMA08G47240.1; -. DR EnsemblPlants; GLYMA08G47240.1; GLYMA08G47240.1; GLYMA08G47240. DR Gramene; GLYMA08G47240.1; GLYMA08G47240.1; GLYMA08G47240. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; I1KZD3; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 580 682 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 580 682 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 734 AA; 81037 MW; FDE95AF27FB486F8 CRC64; MEDEHTLAVA EREMWLNSDQ DEFLGVNDAS MFYADFPPLP DFPCMSSSSS SSSATPLPVK TMTCSTTTTT SSSSSSSSWA MLKSDAEEDA EKNHCNRYMH DQLDATLSST ASMEISQQQN PDPGLGGTVG ECMDDVMDTF GYMELLEAND FFDPASIFQN EGNENPLEEF GTLEEHVPFH EEQHAMVHHQ QGQAEEEDHQ VPFCEEIQGD EEGGDGVGVD DEMSNVFLEW LKSNKDSVSA NDLRNVKLKK ATLESAARRL GGGKEAMKQL LKLILEWVQT SHLQNKRRKE NNGSSISSVL QAQFQDPSGQ NNNQNTQSGS FAPESNTCFN NQTPWLSSQT FATDQAPLMV PPQQFPQPMV GYVGDPYTSG AASNNISATH NHNNSNPYQP GAEQYHMLES AHSWPHSLFN VASNYSQSFG DNNGLNPHGG FGGGGYGNNQ YPYQFFHGPG DRLMRLGPSA TKEARKKRMA RQRRFLSHHR HHSGNHQNQG SDPHARMGGD NCNTALAAPH HANPSANWMY WQAMIGGAAG PLAPVIPAEP PVVQPVVDRS AMQTQNCHQN RVASDRRQGW KPEKNLRFLL QKVLKQSDVG SLGRIVLPKK EAETHLPELE ARDGISITME DIGTSRVWNM RYRYWPNNKS RMYLLENTGD FVRANGLQEG DFIVIYSDVK CGKYMIRGVK VRQQGVKPET KKAGKSQKNQ HGTGTNASST AGTAANNGTS SSPKTKSEKS SKLI // ID I1L1T2_SOYBN Unreviewed; 1125 AA. AC I1L1T2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 42. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100804628 {ECO:0000313|EnsemblPlants:GLYMA09G08350.1}; GN ORFNames=GLYMA_09G072200 {ECO:0000313|EMBL:KRH37536.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA09G08350.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA09G08350.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G08350.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH37536.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH37536.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA09G08350.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G08350.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH37536.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH37536.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000842; KRH37536.1; -; Genomic_DNA. DR RefSeq; XP_003533798.1; XM_003533750.3. DR STRING; 3847.GLYMA09G08350.1; -. DR EnsemblPlants; GLYMA09G08350.1; GLYMA09G08350.1; GLYMA09G08350. DR GeneID; 100804628; -. DR Gramene; GLYMA09G08350.1; GLYMA09G08350.1; GLYMA09G08350. DR KEGG; gmx:100804628; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1L1T2; -. DR OMA; LWASQTQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000008827; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1091 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1125 AA; 125841 MW; D5F60F81E5B21BBB CRC64; MKAPPNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS VVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALFNQV SLGMRFRMMF ETEESGVRRY MGTITGITDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN QVNQLQQSPT SWSPQQQQQQ QQQKLQSMLQ TPLNPLQQQR QQQLPVPQNL PQPQQQQPQM PQQRAQQPQE QQQQSCQQTI MNNGAVASNQ IPNQCVQQPV SYSQLQQQQL ISGSIPPQQC FPSPNKNTLL MTSLPQDSQF QQQIDQQASL LQRQQLQQQQ QQTQLQSSPL QLLQQSLSQR APQQPQMTQM SQQNSSDQQP QLQMLQKLQQ QQQQQQQQQQ QKPLSTSSPL LQSQLLQQQN THQQNQQFPQ LPLSQGHQPQ QLGNNAFSME KLLNGNNYSS SSLMQTQQLS VNQPHNTQKS LTNTRAPSTL TDGDAPSCST SPSTNNCQIS PNLMKRNQQV SATLGGPSVV EPTNHLMQEL HSKSEMQIKH ELPSVRGTDQ LKFKGTVADQ MEASSGTSYC IDPNNIHQNF PLPNFCMDGD VQSHPRNNLP FASNLDGLTP DTLLSRGYDS QKDFQNLLSN YGGAPRDIET ELSTAALSPQ PFGVPDMPFK PGCSSDIAIN DPGVLNNGLW ANQTQRMRTY TKVQKCGSVG RCIDVTRYKG YDELRHDLAR MFGIEGQLED PQRTEWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS SEVQQMSLDG DLGHVPVPNQ ACSGTDNGNA WRGQYDDNSA ASFNR // ID I1LJK6_SOYBN Unreviewed; 431 AA. AC I1LJK6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH29559.1, ECO:0000313|EnsemblPlants:GLYMA11G13210.1}; GN Name=LOC100815020 {ECO:0000313|EnsemblPlants:GLYMA11G13210.1}; GN ORFNames=GLYMA_11G124100 {ECO:0000313|EMBL:KRH29559.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G13210.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G13210.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13210.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29559.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29559.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G13210.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13210.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH29559.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29559.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH29559.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29560.1; -; Genomic_DNA. DR RefSeq; XP_003537916.1; XM_003537868.3. DR STRING; 3847.GLYMA11G13210.1; -. DR EnsemblPlants; GLYMA11G13210.1; GLYMA11G13210.1; GLYMA11G13210. DR GeneID; 100815020; -. DR Gramene; GLYMA11G13210.1; GLYMA11G13210.1; GLYMA11G13210. DR KEGG; gmx:100815020; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; I1LJK6; -. DR OMA; PHSEINY; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 48891 MW; 2B5D6474ADFE0713 CRC64; MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELSPIVT LSVPDGSVWH VGLKKADNKY CFLDGWKEFV QRYSIGVGYL LVFRYEGKSS FNVHIFNLAT SEINYQSVTR SSNEGLHFTN CLKFFEEMEG EDSIEISDSS PSHLSPSSLQ NQALAGSVDK MMPGKSYNTP PALQNLFNGS KLNSINWGEG GNAHSSRSAN SLDNRLTRDI GLQFNAVEFK RSTEELKLRA SIEERMKKTT RKKRKSDGQE PSAGHEEEVE MRFRFYESAS ARKRTVTAEE RERVINEAKA FEPSNPFCRV VLRPSYLYRG CIMYLPSCFA EKHLNGVSGF IKLQISNGRQ WPVRCLYKGG RAKLSQGWFE FSLENNLGEG DVCVFELLRM KEVVLQVTIF HVTEDVGLLS PPLQHNQNMT SAKLLSTPLQ QHLTSTKMVR N // ID I1LJK8_SOYBN Unreviewed; 434 AA. AC I1LJK8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE SubName: Full=Glyma11g13220 {ECO:0000313|EMBL:ALI93477.1}; GN Name=LOC100815555 {ECO:0000313|EnsemblPlants:GLYMA11G13220.1}; GN Synonyms=Glyma11g13220 {ECO:0000313|EMBL:ALI93477.1}; GN ORFNames=GLYMA_11G124200 {ECO:0000313|EMBL:KRH29566.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G13220.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G13220.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13220.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29566.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29566.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G13220.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13220.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:ALI93477.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=26420429; DOI=10.1186/s12870-015-0602-6; RA Lu J., Suo H., Yi R., Ma Q., Nian H.; RT "Glyma11g13220, a homolog of the vernalization pathway gene RT VERNALIZATION 1 from soybean [Glycine max (L.) Merr.], promotes RT flowering in Arabidopsis thaliana."; RL BMC Plant Biol. 15:232-232(2015). RN [5] {ECO:0000313|EMBL:KRH29566.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29566.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KT321660; ALI93477.1; -; mRNA. DR EMBL; CM000844; KRH29566.1; -; Genomic_DNA. DR RefSeq; NP_001304570.1; NM_001317641.1. DR EnsemblPlants; GLYMA11G13220.1; GLYMA11G13220.1; GLYMA11G13220. DR GeneID; 100815555; -. DR Gramene; GLYMA11G13220.1; GLYMA11G13220.1; GLYMA11G13220. DR KEGG; gmx:100815555; -. DR eggNOG; ENOG410JESD; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; I1LJK8; -. DR OMA; CEIKKTR; -. DR OrthoDB; EOG09360WNZ; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 332 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 332 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 434 AA; 50059 MW; 20E245FB8DB1175A CRC64; MRDFSFHSND LLILQGNNRE RWKMDYHQDN PAVFFTTIKN TKQLKVPEEF LKHLNKDLWS NSVLIGPSGD KWQVTILKKG NNVYMDNGWS QFLKDNSVVL DEFLLFTYHG GNCFYVQIFG GNGLERLCRK EAREEQAATP QFFDLPFSNK ASISDGCEIK KTRQEQASAP SLARTNKSKQ RKTFVGSSHL HESNSYKKDL PSSNKGTLSK GCEIKKTRQE QAATPSFLRP NKIKQRKTSA RSSNLNESKS CQEGQERVAT LSWARTNNYN STQRKTSAGS SHLHESNSSK EDLPFSNKAS LSKDFPKPQS SINIECSEAC KLAESFTSRN PHWKHLLTKC NLERCILLIA AEFARKYIPE ALEQIYLWNS EGKSWEVRVH YFRNRNTWYA AFKRGWERFV RDNKLMKGDT CIFEVEEEQG HWSVHIFRTG CAPH // ID I1LJK9_SOYBN Unreviewed; 379 AA. AC I1LJK9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH29565.1, ECO:0000313|EnsemblPlants:GLYMA11G13220.2}; GN Name=LOC100815555 {ECO:0000313|EnsemblPlants:GLYMA11G13220.2}; GN ORFNames=GLYMA_11G124200 {ECO:0000313|EMBL:KRH29565.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G13220.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G13220.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13220.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29565.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29565.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G13220.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13220.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH29565.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29565.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH29565.1; -; Genomic_DNA. DR RefSeq; XP_006590919.1; XM_006590856.2. DR EnsemblPlants; GLYMA11G13220.2; GLYMA11G13220.2; GLYMA11G13220. DR GeneID; 100815555; -. DR Gramene; GLYMA11G13220.2; GLYMA11G13220.2; GLYMA11G13220. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 277 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 277 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 379 AA; 43970 MW; 731A9495AF1A86B8 CRC64; MRDFSFHSND LLILQGNNRE RWKMDYHQDN PAVFFTTIKN TKQLKVPEEF LKHLNKDLWS NSVLIGPSGD KWQVTILKKG NNVYMDNGWS QFLKDNSVVL DEFLLFTYHG GNCFYVQIFG GNGLERLCRK EAREEQAATP QFFDLPFSNK ASISDGCEIK KTRQEQASAP SLARTNKSKQ RKTFVGSSHL HESNSYKKGQ ERVATLSWAR TNNYNSTQRK TSAGSSHLHE SNSSKEDLPF SNKASLSKDF PKPQSSINIE CSEACKLAES FTSRNPHWKH LLTKCNLERC ILLIAAEFAR KYIPEALEQI YLWNSEGKSW EVRVHYFRNR NTWYAAFKRG WERFVRDNKL MKGDTCIFEV EEEQGHWSVH IFRTGCAPH // ID I1LJL0_SOYBN Unreviewed; 302 AA. AC I1LJL0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH29567.1, ECO:0000313|EnsemblPlants:GLYMA11G13220.3}; GN Name=LOC100815555 {ECO:0000313|EnsemblPlants:GLYMA11G13220.3}; GN ORFNames=GLYMA_11G124200 {ECO:0000313|EMBL:KRH29567.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G13220.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G13220.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13220.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29567.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29567.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G13220.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13220.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH29567.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29567.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH29567.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA11G13220.3; GLYMA11G13220.3; GLYMA11G13220. DR Gramene; GLYMA11G13220.3; GLYMA11G13220.3; GLYMA11G13220. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 34675 MW; A1FA027288D29C54 CRC64; MRDFSFHSND LLILQGNNRE RWKMDYHQDN PAVFFTTIKN TKQLKVPEEF LKHLNKDLWS NSVLIGPSGD KWQVTILKKG NNVYMDNGWS QFLKDNSVVL DEFLLFTYHG GNCFYVQIFG GNGLERLCRK EAREEQAATP QFFDLPFSNK ASISDGCEIK KTRQEQASAP SLARTNKSKQ RKTFVGSSHL HESNSYKKGQ ERVATLSWAR TNNYNSTQRK TSAGSSHLHE SNSSKEDLPF SNKASLSKDF PKPQSSINIE CSEACKLAES FTSRNPHWKH LLTKCNLERC ILVNMNLFSR FE // ID I1LKD7_SOYBN Unreviewed; 791 AA. AC I1LKD7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100816621 {ECO:0000313|EnsemblPlants:GLYMA11G15910.1}; GN ORFNames=GLYMA_U019800 {ECO:0000313|EMBL:KRG89022.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G15910.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G15910.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G15910.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG89022.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89022.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G15910.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G15910.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG89022.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89022.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ474118; KRG89022.1; -; Genomic_DNA. DR RefSeq; XP_003539110.1; XM_003539062.3. DR EnsemblPlants; GLYMA11G15910.1; GLYMA11G15910.1; GLYMA11G15910. DR GeneID; 100816621; -. DR Gramene; GLYMA11G15910.1; GLYMA11G15910.1; GLYMA11G15910. DR KEGG; gmx:100816621; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 747 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 88078 MW; ADC0CFDA7C49F44E CRC64; MEIDLNHEVT EVEKNAFCDR ECEKGVGVTC WSSSTCSSST SSSSALVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQVASFSPFT PLEIPTYDLQ PQIFCRVVNV QLLANKENDE VYTQVTLLPQ AELEGMYLEG KELEELGAEE EGDDRSPTKS TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HDVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRGENGELR LGIRRAVRPR NDLPESVIGS QNCYPNVLSS VANAISTKSK FHVFYSPRAS QADFVVPYQK YVKSIKNPVS IGTRFKMRFE MDESQERRCC SGMLIGTSDL DPYRWPKSKW RCLMVRWDED IETNHKDRVS PWEIDPSAPL PPLSIQSSPR LKKLRTGLQV ASPSHLITAR GRGLIDFEES VRSPKVLQGQ ENAGFGSLYY GCDTVTKPPG FEMSSQSHPN LGSAEVRKIT SSELSSVHPF SYAGFVETNR FPRVLQGQEI CPLKSLTGKV DMNLGAWGMP NLSCTTFNLH QATKPSFQLS LFPYGDIHQA SQASLFCSKS TTFQRENVPF NKPSTQAGII VNEVGRSDLP NDHKLQGNNI SAAGNMGVSI DNNVQGKVNA CKLFGFSLSG ETTTQNLQNS AKRSCTKVHK QGSLVGRAID LSRLSGYNDL LSELERLFSM EGLLKDPDKG WKILYTDSEN DIMVVGDDPW HEFCDVVSKI HIYTQEEVEK MTIEMISDDT HSCLEEAPVI MEASKSSSVG QPDYSPTAVR V // ID I1LL50_SOYBN Unreviewed; 697 AA. AC I1LL50; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100810558 {ECO:0000313|EnsemblPlants:GLYMA11G20490.1}; GN ORFNames=GLYMA_11G145500 {ECO:0000313|EMBL:KRH29907.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G20490.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G20490.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G20490.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29907.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29907.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G20490.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G20490.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH29907.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29907.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH29907.1; -; Genomic_DNA. DR RefSeq; XP_003538160.1; XM_003538112.3. DR STRING; 3847.GLYMA11G20490.1; -. DR EnsemblPlants; GLYMA11G20490.1; GLYMA11G20490.1; GLYMA11G20490. DR GeneID; 100810558; -. DR Gramene; GLYMA11G20490.1; GLYMA11G20490.1; GLYMA11G20490. DR KEGG; gmx:100810558; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; I1LL50; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 665 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 697 AA; 76556 MW; 6294E2BD94F22BF1 CRC64; MKEGEKVLDP QLWHACAGGM VQMPQVHSKV FYFPQGHAEH AHTTIDLRVP PFILCNVEAV KFMADPETDQ VFAKLSLVPL RNSELGPDSD SAAGDDAAEP SSCEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDC TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSVVFLRAEN GDLCVGIRRA KKGIDEGSGL ASSSVWSSAS GSGIGPFSFF LKEENKMLRN GCGVGGNLSG RVKVRAEDVV EAVTLAASNK AFEVVYYPRA STPEFCVKAS SVGAAMRIQW CSGMRFKMAF ETEDATRISW FMGTIASVQV VDPICWPNSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN IPLINFTPFS PPRKKLRPQH PDFPLDVQFP IPMLSGNQHG PNSPLCGFSD NAPAGIQGAR HAQFGKSLSD LHLNNNKLQL GMLPTNIHQL GGVYTGISSG NMMTKHDKSK ESLSCFLTMG KSSKSLEKSD DVKKHQFLLF GQPILTEQQI SSCSRDVLSR GKRSLGDEKD KAKCVLDDSQ STLSQQFSPG KASSAEFFWQ LGLDTGHCKV FLESEDVGRT LDLSQFGSYE ELYRRLGNMF GIERSEILNH VLYYDAAGAV KQTGEEPFSD FMKTAKRLTI LTDSGSKNIK RAFITGTRNG EHGLDPSNKT GPLSIFA // ID I1LM27_SOYBN Unreviewed; 844 AA. AC I1LM27; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100784373 {ECO:0000313|EnsemblPlants:GLYMA11G31940.1}; GN ORFNames=GLYMA_11G204200 {ECO:0000313|EMBL:KRH30740.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G31940.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G31940.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G31940.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH30740.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH30740.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G31940.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G31940.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH30740.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH30740.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH30740.1; -; Genomic_DNA. DR EMBL; CM000844; KRH30741.1; -; Genomic_DNA. DR RefSeq; XP_006591281.1; XM_006591218.2. DR RefSeq; XP_014619664.1; XM_014764178.1. DR STRING; 3847.GLYMA11G31940.1; -. DR EnsemblPlants; GLYMA11G31940.1; GLYMA11G31940.1; GLYMA11G31940. DR EnsemblPlants; GLYMA11G31940.2; GLYMA11G31940.2; GLYMA11G31940. DR GeneID; 100784373; -. DR Gramene; GLYMA11G31940.1; GLYMA11G31940.1; GLYMA11G31940. DR Gramene; GLYMA11G31940.2; GLYMA11G31940.2; GLYMA11G31940. DR KEGG; gmx:100784373; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; ESHHIVS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 718 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 844 AA; 93600 MW; B6A44C316DCB7CB0 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EIDGHIPNYP SLPPQLICQL HNITMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSIF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSLHDGRD EATNGLMWLR GGPVDQGLNS LNFQGAGGML PWMQQRLDPT LLGNDQNQQY QAMLAAGLQN LGSGYLMKQQ LMNFQQPYHY LQQSGNSNSP LQLQQQQPIQ QSVSSNMLQP QTHVLTENLS QHLLQKPHNN QEVQAQQQQH TYQDSLSILG DQLHQRQHSG IPSSSYSKPD FLDSSMKFPA SVSPGQNMLS SLCPEGSGSL LNLSRSGQSL LTEQLPQQQW TQKYAPVQVN AYGSTVSHPQ YSGKDSVMVL PHCNSDAQNS TLFGVNIDSS GLLLPTTVPG YTTSSADTNS STMPLAESGF QGSLYGCMQD SSELLQSAGH TDPENQTQTF VKVYKSGSVG RSLDISRFSS YHELREELAQ MFGIEGKLED PLRSGWQLVF VDRENDVLLL GDDPWESFVN NVWYIKILSP EDIQKMGDQA VESLALGSGQ RLNGTGAESQ DIVSGPPSIG SLEY // ID I1LQ96_SOYBN Unreviewed; 441 AA. AC I1LQ96; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH24554.1, ECO:0000313|EnsemblPlants:GLYMA12G05250.1}; GN Name=LOC100813285 {ECO:0000313|EnsemblPlants:GLYMA12G05250.1}; GN ORFNames=GLYMA_12G048600 {ECO:0000313|EMBL:KRH24554.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G05250.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G05250.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH24554.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24554.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G05250.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH24554.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24554.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH24554.1; -; Genomic_DNA. DR RefSeq; XP_006592124.1; XM_006592061.2. DR STRING; 3847.GLYMA12G05250.1; -. DR EnsemblPlants; GLYMA12G05250.1; GLYMA12G05250.1; GLYMA12G05250. DR GeneID; 100813285; -. DR Gramene; GLYMA12G05250.1; GLYMA12G05250.1; GLYMA12G05250. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; I1LQ96; -. DR OMA; CILQFDE; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 302 397 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 302 397 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 441 AA; 50118 MW; D4A629572F8EAC6D CRC64; MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELLPIVT LSVPDGSVWR VGLKKADNKY WFLDGWKEFV KHYSISIGYL LVFKYEGKSS FSVHIFNLAT SEINYQSATR SSNEGLHFTN RLKLFEEIED EDSIEISDSS PSHLAPSSLQ NQALTGSVDK MMPGKSYTPP ALQNLFNGSK LNSINWGEGG NAHSSRIANS LDNRLTRDIG LQFNAVEFKR STEELKLRAS MEERMKKTTR KKRKSVCASA DGQDPSAEHE EEVEMRLRFY ESASARKRTV TAEERERAIN AAKAFEPPNP FCRVVLRPSY LYRGCIMYLP SCFAEKHLNG VSGFIKLQIS NGRQWPVRCL YRGGRAKLSQ GWFEFSLENN LGEGDVCVFE LLRMKEVVLQ VTVFRVIEDV GLLSPPLQQN QNMSSAKMLN TPLQQHLTST KMVRNQQQVH S // ID I1LQ97_SOYBN Unreviewed; 436 AA. AC I1LQ97; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH24553.1, ECO:0000313|EnsemblPlants:GLYMA12G05250.2}; GN Name=LOC100813285 {ECO:0000313|EnsemblPlants:GLYMA12G05250.2}; GN ORFNames=GLYMA_12G048600 {ECO:0000313|EMBL:KRH24553.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G05250.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G05250.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH24553.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24553.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G05250.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH24553.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24553.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH24553.1; -; Genomic_DNA. DR RefSeq; XP_003541121.1; XM_003541073.3. DR EnsemblPlants; GLYMA12G05250.2; GLYMA12G05250.2; GLYMA12G05250. DR GeneID; 100813285; -. DR Gramene; GLYMA12G05250.2; GLYMA12G05250.2; GLYMA12G05250. DR KEGG; gmx:100813285; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 436 AA; 49687 MW; 13CE75AA670943E5 CRC64; MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELLPIVT LSVPDGSVWR VGLKKADNKY WFLDGWKEFV KHYSISIGYL LVFKYEGKSS FSVHIFNLAT SEINYQSATR SSNEGLHFTN RLKLFEEIED EDSIEISDSS PSHLAPSSLQ NQALTGSVDK MMPGKSYTPP ALQNLFNGSK LNSINWGEGG NAHSSRIANS LDNRLTRDIG LQFNAVEFKR STEELKLRAS MEERMKKTTR KKRKSDGQDP SAEHEEEVEM RLRFYESASA RKRTVTAEER ERAINAAKAF EPPNPFCRVV LRPSYLYRGC IMYLPSCFAE KHLNGVSGFI KLQISNGRQW PVRCLYRGGR AKLSQGWFEF SLENNLGEGD VCVFELLRMK EVVLQVTVFR VIEDVGLLSP PLQQNQNMSS AKMLNTPLQQ HLTSTKMVRN QQQVHS // ID I1LQ98_SOYBN Unreviewed; 315 AA. AC I1LQ98; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05250.3}; GN Name=LOC100813285 {ECO:0000313|EnsemblPlants:GLYMA12G05250.3}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G05250.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G05250.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA12G05250.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA12G05250.3; GLYMA12G05250.3; GLYMA12G05250. DR Gramene; GLYMA12G05250.3; GLYMA12G05250.3; GLYMA12G05250. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR Proteomes; UP000008827; Chromosome 12. DR ExpressionAtlas; I1LQ98; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 35869 MW; DA261A9C1376DF7C CRC64; MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELLPIVT LSVPDGSVWR VGLKKADNKY WFLDGWKEFV KHYSISIGYL LVFKYEGKSS FSVHIFNLAT SEINYQSATR SSNEGLHFTN RLKLFEEIED EDSIEISDSS PSHLAPSSLQ NQALTGSVDK MMPGKSYTPP ALQNLFNGSK LNSINWGEGG NAHSSRIANS LDNRLTRDIG LQFNAVEFKR STEELKLRAS MEERMKKTTR KKRKSDGQDP SAEHEEEVEM RLRFYESASA RKRTVTAEER ERAINAAKAF EPPNPFCRVV LRPSYLYRGC IMVSP // ID I1LQ99_SOYBN Unreviewed; 251 AA. AC I1LQ99; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05250.4}; GN Name=LOC100813285 {ECO:0000313|EnsemblPlants:GLYMA12G05250.4}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G05250.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G05250.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA12G05250.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05250.4}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA12G05250.4; GLYMA12G05250.4; GLYMA12G05250. DR Gramene; GLYMA12G05250.4; GLYMA12G05250.4; GLYMA12G05250. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR Proteomes; UP000008827; Chromosome 12. DR ExpressionAtlas; I1LQ99; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 28432 MW; 25FF8645DDA37E3F CRC64; MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELLPIVT LSVPDGSVWR VGLKKADNKY WFLDGWKEFV KHYSISIGYL LVFKYEGKSS FSVHIFNLAT SEINYQSATR SSNEGLHFTN RLKLFEEIED EDSIEISDSS PSHLAPSSLQ NQALTGSVDK MMPGKSYTPP ALQNLFNGSK LNSINWGEGG NAHSSRIANS LDNRLTRDIG LQFNAVEFKR STEELKLRAS MEERMKKTTR KKRKSGLSSI F // ID I1LQY7_SOYBN Unreviewed; 792 AA. AC I1LQY7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100783513 {ECO:0000313|EnsemblPlants:GLYMA12G07560.1}; GN ORFNames=GLYMA_12G071000 {ECO:0000313|EMBL:KRH24914.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G07560.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G07560.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G07560.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH24914.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24914.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G07560.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G07560.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH24914.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24914.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH24914.1; -; Genomic_DNA. DR RefSeq; XP_006592219.1; XM_006592156.2. DR STRING; 3847.GLYMA12G07560.1; -. DR EnsemblPlants; GLYMA12G07560.1; GLYMA12G07560.1; GLYMA12G07560. DR GeneID; 100783513; -. DR Gramene; GLYMA12G07560.1; GLYMA12G07560.1; GLYMA12G07560. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR InParanoid; I1LQY7; -. DR OMA; CVESENG; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 166 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 748 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 166 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 87732 MW; D252EE0A6DBB9BC1 CRC64; MEIDLNHEVT EAEKNAFCDR ECEKGAGAGA GITCWSSSTC SSSSAACVSS SYLELWHACA GPLTSLLKKG NVVVYFPQGH LEQVASFSPF TPLEIPTYDL QPQIFCRVVN VQLLANKEND EVYTQVTLLP QPELEGMYSE GKELEELGAE EDGDERSPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGENGEL RLGIRRAVRP RNDLPESVIG SQNCYSNVLS SVANAISTKS KFHVFYSPRA SHADFVVPYQ KYVKSIKNPV SIGTRFKMRF EMDESQERRC SSGTLIATSD LDPYRWAKSK WRCLMVRWDE DIETNHQDRV SPWEIDPSAP LPPLSIQSSP RLKKLRTGLQ VASPSHLITA ARGSGLVGFE ESVRSPKVLQ GQENAGFVSF YYGCDTVTKP PGFEMSSPSH PNLGSAEVRK VSSSELNSVH PFSYAGFVET NRFPRVLQGQ EICSLKSLTG KVDLNLGAWG MPNLSCTTFN LHQATKPNFQ PSLFPYGDIH QAGQASLFCS KSTTFQRENV PFNKPSTQAG IIVNEVGRSD LPNEHKLQDN ISSAANMGVS NDNNVQGKVN ACKLFGFSLS GETTAQNLQN SAKRSCTKVH KQGSLVGRAI DLSRLSGYND LLSELERLFS MEGLLKDPDK GWRILYTDSE NDIMVVGDDP WHEFCDVVSK IHIYTQEEVE KMTIGMISDD THSCLEEAPV IMEASKSSSV GQPDYSPTAV RV // ID I1LR43_SOYBN Unreviewed; 701 AA. AC I1LR43; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100814686 {ECO:0000313|EnsemblPlants:GLYMA12G08110.1}; GN ORFNames=GLYMA_12G076200 {ECO:0000313|EMBL:KRH25023.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G08110.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G08110.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G08110.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH25023.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH25023.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G08110.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G08110.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH25023.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH25023.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH25023.1; -; Genomic_DNA. DR RefSeq; XP_003539766.1; XM_003539718.3. DR STRING; 3847.GLYMA12G08110.1; -. DR EnsemblPlants; GLYMA12G08110.1; GLYMA12G08110.1; GLYMA12G08110. DR GeneID; 100814686; -. DR Gramene; GLYMA12G08110.1; GLYMA12G08110.1; GLYMA12G08110. DR KEGG; gmx:100814686; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; I1LR43; -. DR OMA; RNTENGL; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 589 669 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 701 AA; 77189 MW; E44FD8F9F04BEA30 CRC64; MKEGEKVLDP QLWHACAGGM VQMPQMNSKV FYFPQGHAEH AHTNIHLRLP PFILCNVEAV KFMANPETDE VFAKLSLLPL RNSELGADSD GAGGDDVAEP SCCEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSVVFLRAEN GDLCVGIRRA KKGISEGSGS GSSSVWSSAS GSGNGNCGIG PYGPFSFFLK EENKMLRNGC GGNLSGRVKV RAEDVVEAVT LAASNKPFEV VYYPRASTPE FCVKASAVRA AMRIQWCSGM RFKMAFETED ASRISWFMGT IASVQVVDPI RWPNSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNIPLI NFTPFSPPRK KLRPQHPDFP LDVQFPIPMF SGNQLGPNSP LCGFSDNAPA GIQGARHAQF GKSLSDLHLN NKLQLGMLPT NIHQLGVYNE ISNGNMMTNH DKSKESLSCF LTMGKSTKSL EKSDDVKKHQ FLLFGQPILT EQQISSCSGD VLSHRKRSVS DDKDKAKCLM DDSQSTLSQQ FSPGKASSAE FSWQLGLDTG HCKVFLESED VGRTLDLSLF GSYEDLYRRL AIMFGIERSE ILNHVLYHDA AGAAKKTGEE PFSDFMKTAK RLTILTDSSS KNIKRAFITG TRNGEHGLDA SNKTGPLSIF A // ID I1LT90_SOYBN Unreviewed; 665 AA. AC I1LT90; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100793224 {ECO:0000313|EnsemblPlants:GLYMA12G28550.1}; GN ORFNames=GLYMA_12G164100 {ECO:0000313|EMBL:KRH26266.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G28550.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G28550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G28550.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH26266.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26266.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G28550.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G28550.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH26266.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26266.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH26266.1; -; Genomic_DNA. DR RefSeq; XP_003540131.1; XM_003540083.3. DR STRING; 3847.GLYMA12G28550.1; -. DR EnsemblPlants; GLYMA12G28550.1; GLYMA12G28550.1; GLYMA12G28550. DR GeneID; 100793224; -. DR Gramene; GLYMA12G28550.1; GLYMA12G28550.1; GLYMA12G28550. DR KEGG; gmx:100793224; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR InParanoid; I1LT90; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 541 633 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 74274 MW; 9964496B38507063 CRC64; MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV TSPDDPLPES PRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQSNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEARSH KLSVGMRFKM RFEGDEVPER RFSGTIVGVG DNKSSVWADS EWRSLKVQWD EPSSILRPDR VSPWELEPLV STPPTNPQPS QRNKRSRPPI LPSTMPDSSL QGVWKSPVES APFSYCDHQH GRDVYPSTNF NSTATGFLGF GGNCYASNKS IYWSSRMENS TESFSPVALK EFGEKRQGTA NGCRLFRIQL HDNSNSNEES LPMVTLSGRM GDDGPLPSLD AESDQHSEPS NVNRSDIPSV SCDAEKSCLR SPQESQSRQI RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEEMFDITG ELCGSTKKWQ VVYTDNEDDM MMVGDDPWLE FCSIVRKIFI YTAEEVRKLS PKIGLPISEE VKPSKMDSEA VANPEDQSSI VGPGC // ID I1LTG4_SOYBN Unreviewed; 799 AA. AC I1LTG4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100812909 {ECO:0000313|EnsemblPlants:GLYMA12G29280.1}; GN ORFNames=GLYMA_12G171000 {ECO:0000313|EMBL:KRH26391.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G29280.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G29280.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH26391.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26391.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G29280.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH26391.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26391.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH26391.1; -; Genomic_DNA. DR RefSeq; XP_006592679.1; XM_006592616.2. DR STRING; 3847.GLYMA12G29280.1; -. DR EnsemblPlants; GLYMA12G29280.1; GLYMA12G29280.1; GLYMA12G29280. DR GeneID; 100812909; -. DR Gramene; GLYMA12G29280.1; GLYMA12G29280.1; GLYMA12G29280. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR InParanoid; I1LTG4; -. DR OMA; QSHANPV; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 754 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 799 AA; 88732 MW; 65661892F8B11C96 CRC64; MEIDLNDAVT SEAEKSASCN GECEKGAALS SPTCSSSGSS STRVSSSYIE LWHACAGPLT SLPKKGNVVV YFPQGHLEQA ASFSPFSPME MPTYDLQPQI FCRVVNIQLL ANKENDEVYT QVTLLPQAEL AGMYMEGKEL EKLGADEEGN ETTPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKKQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV FYSPRASHAD FAVPYQKYIK SIKNPVTIGT RFKMKFEMDE SPERRCTSGI VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE VDPSASLPPL SIQSSRRLKK LRPGLLAAAP NHLTTVGSSG FMDSEESVRS SKVLQGQENT GFMSLYYGCD TVTKQPEFEI RSPSHPNLAS TGVRKIAAAE FMRVHPSSYA GFTETNMFPR VLQGQEICPF RSLAGKVDLN FGSWGKPNVS YTNYNLHQAT KPNFHSFGPE VVQTAYFPYG DIHKAGQGSS MLCSNPTNFQ REDIPFNTPS IQSGITIPNE QKLQDNISGA ASLGANMRIP NDDNFKGKVN ACKLFGFPLS RETTAQNLQN SSKRSCTKVH KQGSLVGRAI DLSRLSSYND LLIELERLFS MEGLLIDPNK GWRILYTDSE NDIMVVGDDP WHLPFVCSEF CDVVSKIHIH TQEEVEKMTI GMMINDDSQS CLEQAPVMVE ASKSSSVGQP DSSPTVVRM // ID I1LTG5_SOYBN Unreviewed; 666 AA. AC I1LTG5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100812909 {ECO:0000313|EnsemblPlants:GLYMA12G29280.2}; GN ORFNames=GLYMA_12G171000 {ECO:0000313|EMBL:KRH26392.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G29280.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G29280.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH26392.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26392.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G29280.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH26392.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26392.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH26392.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA12G29280.2; GLYMA12G29280.2; GLYMA12G29280. DR Gramene; GLYMA12G29280.2; GLYMA12G29280.2; GLYMA12G29280. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 531 621 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 30 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 666 AA; 74502 MW; E1DE18D0A70EE1FE CRC64; MYMEGKELEK LGADEEGNET TPTKSTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKKQRPSQEL VAKDLHGVEW KFRHIYRGQP RRHLLTTGWS IFVSQKNLVS GDAVLFLRGE NGELRLGIRR AARPRNGLPE SIVGSQSYYP NFLSSVANAI SAKSMFHVFY SPRASHADFA VPYQKYIKSI KNPVTIGTRF KMKFEMDESP ERRCTSGIVT GMSDLDPYKW PKSKWRCLMV RWDEDIEINH QDRVSPWEVD PSASLPPLSI QSSRRLKKLR PGLLAAAPNH LTTGSSGFMD SEESVRSSKV LQGQENTGFM SLYYGCDTVT KQPEFEIRSP SHPNLASTGV RKIAAAEFMR VHPSSYAGFT ETNMFPRVLQ GQEICPFRSL AGKVDLNFGS WGKPNVSYTN YNLHQATKPN FHSFGPEVVQ TAYFPYGDIH KAGQGSSMLC SNPTNFQRED IPFNTPSIQS GITIPNEQKL QDNISGAASL GANMRIPNDD NFKGKVNACK LFGFPLSRET TAQNLQNSSK RSCTKVHKQG SLVGRAIDLS RLSSYNDLLI ELERLFSMEG LLIDPNKGWR ILYTDSENDI MVVGDDPWHL PFVCSEFCDV VSKIHIHTQE EVEKMTIGMM INDDSQSCLE QAPVMVEASK SSSVGQPDSS PTVVRM // ID I1LTG6_SOYBN Unreviewed; 792 AA. AC I1LTG6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100812909 {ECO:0000313|EnsemblPlants:GLYMA12G29280.3}; GN ORFNames=GLYMA_12G171000 {ECO:0000313|EMBL:KRH26386.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G29280.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G29280.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH26386.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26386.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G29280.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH26386.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26386.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH26386.1; -; Genomic_DNA. DR RefSeq; XP_006592682.1; XM_006592619.2. DR EnsemblPlants; GLYMA12G29280.3; GLYMA12G29280.3; GLYMA12G29280. DR GeneID; 100812909; -. DR Gramene; GLYMA12G29280.3; GLYMA12G29280.3; GLYMA12G29280. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 745 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 87986 MW; 6A05ACFCFEABA302 CRC64; MEIDLNDAVT SEAEKSASCN GECEKGAALS SPTCSSSGSS STRVSSSYIE LWHACAGPLT SLPKKGNVVV YFPQGHLEQA ASFSPFSPME MPTYDLQPQI FCRVVNIQLL ANKENDEVYT QVTLLPQAEL AGMYMEGKEL EKLGADEEGN ETTPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKKQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV FYSPRASHAD FAVPYQKYIK SIKNPVTIGT RFKMKFEMDE SPERRCTSGI VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE VDPSASLPPL SIQSSRRLKK LRPGLLAAAP NHLTTGSSGF MDSEESVRSS KVLQGQENTG FMSLYYGCDT VTKQPEFEIR SPSHPNLAST GVRKIAAAEF MRVHPSSYAG FTETNMFPRV LQGQEICPFR SLAGKVDLNF GSWGKPNVSY TNYNLHQATK PNFHSFGPEV VQTAYFPYGD IHKAGQGSSM LCSNPTNFQR EDIPFNTPSI QSGITIPNEQ KLQDNISGAA SLGANMRIPN DDNFKGKVNA CKLFGFPLSR ETTAQNLQNS SKRSCTKVHK QGSLVGRAID LSRLSSYNDL LIELERLFSM EGLLIDPNKG WRILYTDSEN DIMVVGDDPW HEFCDVVSKI HIHTQEEVEK MTIGMMINDD SQSCLEQAPV MVEASKSSSV GQPDSSPTVV RM // ID I1LTK0_SOYBN Unreviewed; 700 AA. AC I1LTK0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100778135 {ECO:0000313|EnsemblPlants:GLYMA12G29720.1}; GN ORFNames=GLYMA_12G174100 {ECO:0000313|EMBL:KRH26435.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G29720.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G29720.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29720.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH26435.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26435.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G29720.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29720.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH26435.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26435.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH26435.1; -; Genomic_DNA. DR RefSeq; XP_003540185.1; XM_003540137.3. DR RefSeq; XP_006592702.1; XM_006592639.2. DR STRING; 3847.GLYMA12G29720.1; -. DR EnsemblPlants; GLYMA12G29720.1; GLYMA12G29720.1; GLYMA12G29720. DR GeneID; 100778135; -. DR Gramene; GLYMA12G29720.1; GLYMA12G29720.1; GLYMA12G29720. DR KEGG; gmx:100778135; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; I1LTK0; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 667 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 76825 MW; 26ADBA5A553D586F CRC64; MKETDKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNVDFGAA RIPIPPLILC CVAAVKFLAD PETDEVFARL RMVPLRNSEL DYEDSDGNGA EGSEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SAEPPVQTVI AKDVHGEVWK FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGGVGGAEG PCGWSSSGGG LGPGPGLGLG PGPGPYGAFS GFLREESKVV RSGRPKVSGE SVREAVTLAA SNQPFEVVYY PRANTPEFCI RTSAVRGAMR IQWSSGMRFK MPFETEDSSR ISWFMGTIAS VQLLDPIRWP NSPWRLLQVT WDEPDLLHNV KRVSPWLVEL VSNVPIIHLA PFSPPRKKLR FPQHPEFPLD FQFPIPSFSG NPFGSSTSSP LCCLSDNAPA GIQGARHAQI GISLSDLHLN NKLQLGLLPT NVHQLNLHTG ICNGNITNHG KSKESLSCLL TMGNSNKSLE KSDHVKRHQF LLFGQPILTE QQISRSSSDV LSQNFTVTDD ENKEKKEKGF LSDSQSSVSP GKSSSTTEFS WQVGSDTSHC KVFIESEDVG RTLDLSCLGS YEELYMRLAN MFGIERSEML SHVLYRDAAG ALKQTGEEPF SEFMKTAKRL TILTDSNNKD SRRVWITGIR NAEHGLDTAS NKTGPLGIFA // ID I1LW27_SOYBN Unreviewed; 551 AA. AC I1LW27; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100805638 {ECO:0000313|EnsemblPlants:GLYMA13G02410.1}; GN ORFNames=GLYMA_13G084700 {ECO:0000313|EMBL:KRH18828.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G02410.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G02410.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G02410.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH18828.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH18828.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G02410.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G02410.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH18828.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH18828.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH18828.1; -; Genomic_DNA. DR RefSeq; XP_003543780.1; XM_003543732.3. DR STRING; 3847.GLYMA13G02410.1; -. DR EnsemblPlants; GLYMA13G02410.1; GLYMA13G02410.1; GLYMA13G02410. DR GeneID; 100805638; -. DR Gramene; GLYMA13G02410.1; GLYMA13G02410.1; GLYMA13G02410. DR KEGG; gmx:100805638; -. DR eggNOG; ENOG410IJN8; Eukaryota. DR eggNOG; ENOG410ZJKK; LUCA. DR InParanoid; I1LW27; -. DR OMA; AGDINHR; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 551 AA; 60678 MW; 75A046274C98345D CRC64; MSPPQPSRVD PKIWRACAGA AVQIPKLHSR VYYFPQGHME HASPSHYLSP LIRSLPFVPC HVSSLDFLAD PFSDEVFAKF LLTPLSQSQQ QPFQNDTKEA RNDDDDEDRE NNGVVSFAKI LTPSDANNGG GFSVPRFCAD SCFPPLDFRA DPPVQLLSVA DIHGVEWRFR HIYRGTPRRH LFTTGWSKFV NHKKLVAGDT VVFVKDSDGI VSVGIRRAAR FAAAIETPPP AEREGFSRST TGRVTAEAVA AAAESAARNA PFEVVYYPRT GFADFVVSAE VVEESMKCAW VGGMRVKISM ETEDSSRMTW YQGTVSSACA SENGPWRMLQ VNWDEPEVLQ NAKQVSPWQV ELVSPPFALH TVFSPNKRLR ADQGSGLLSN REQDPFFPMP GFSNSAMGHM TGFPNSTVGQ MDKPLLSYES FPAGMQGARH DLYSPLSFSN FLNDNSYLYM GSGSFGNNPV QSLGTVTTEL NMSSSQSDDL SPHSQSSFHS FGTEFTGTRN CDTKVGPGSI LLFGKIIQPA ESDLHDADCM ERDGSRGSNK LKTVEACYFS K // ID I1LY86_SOYBN Unreviewed; 1131 AA. AC I1LY86; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 42. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100805456 {ECO:0000313|EnsemblPlants:GLYMA13G17270.1}; GN ORFNames=GLYMA_13G112600 {ECO:0000313|EMBL:KRH19355.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G17270.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G17270.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G17270.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH19355.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH19355.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G17270.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G17270.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH19355.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH19355.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH19355.1; -; Genomic_DNA. DR RefSeq; XP_014620925.1; XM_014765439.1. DR STRING; 3847.GLYMA13G17270.1; -. DR EnsemblPlants; GLYMA13G17270.1; GLYMA13G17270.1; GLYMA13G17270. DR GeneID; 100805456; -. DR Gramene; GLYMA13G17270.1; GLYMA13G17270.1; GLYMA13G17270. DR KEGG; gmx:100805456; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1LY86; -. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1003 1096 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 493 523 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1131 AA; 126747 MW; 04AE9DC56A88F139 CRC64; MKAPSNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVAKD LHDNTWAFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKVTYTQV SLGMRFRMMF ETEESGVRRY MGTITGINDL DPVRWKSSQW RNIQVGWDES TAGERPSRVS IWEIEPVVTP FYICPPPFFR PKFPRQPGMP DDESDMENAF KRAVPWLGDD FGMKDASSSI FPGFSLVQWM SMQQNNQLTA AQSGCFPSML PFNTLQGNLS TDDPSKLLSF QAPVLSTPSL QLNKPNLPNQ INQLQQSPVS WPQQQQLQQQ QQLQQQQQQQ QQQQQQLQQQ QQQQLQSLLQ VPMNHLQQQR EQQLPEPQNL PLWQQLPQQL GQQPQKQQSS QHATIMNNGV VASNQITNQF SQQPMAYGQL QQQQLLSGGI QSATKNTLPL TSLPQDSQFQ QQIDQQASLL QRQQQQQQTQ LQQSPLQLLQ QNLPQRAPQQ PPATQMLQQN PSEQQLHLQL LQKLQQQQQH QQRLLSTSTP LLLSQLLQQQ NTHQQNQQLP QPLPPISQHQ PQQLGNNAFS TEKLLNSNNL SSSLMQSQKL SMNHPQNTQK SLTITRAPST LTEGDAPSCS TSPSTNNCQV TPPNLLKRNQ QLPATLRGSL IVEPTSNLIQ ELHSKPDTQI KQEFLNVKGP DQLKYKGTIT DQLEASSGTS YCLDPPGNVQ QNLPLSNFCM EGDVQSHPRN SLPFDSNLDG LTPDTMLLTG YDSQKDLQNL LSNYGGAPRE IETELSTADI SSQSFGVPNM PFKPGCSSDV GINDTGVLNN NNGLRANQTP RMRTYTKVQK RGSVGRCIDV TRYKGYDELR HDLARMFGIE GQLEDPLRTD WKLVYVDHEN DILLVGDDPW DEFVSCVQSI KILSSAEVQQ MSLDGDLGGN VPIPNQAYSG TDSGNAWRGQ YEDNSAASFN R // ID I1M054_SOYBN Unreviewed; 714 AA. AC I1M054; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 42. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100808119 {ECO:0000313|EnsemblPlants:GLYMA13G24240.1}; GN ORFNames=GLYMA_13G174000 {ECO:0000313|EMBL:KRH20373.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G24240.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G24240.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G24240.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH20373.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH20373.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G24240.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G24240.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH20373.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH20373.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH20373.1; -; Genomic_DNA. DR RefSeq; XP_003542716.1; XM_003542668.3. DR STRING; 3847.GLYMA13G24240.1; -. DR EnsemblPlants; GLYMA13G24240.1; GLYMA13G24240.1; GLYMA13G24240. DR GeneID; 100808119; -. DR Gramene; GLYMA13G24240.1; GLYMA13G24240.1; GLYMA13G24240. DR KEGG; gmx:100808119; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; I1M054; -. DR KO; K14486; -. DR OMA; IVDYPFC; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 714 AA; 78286 MW; 571F83C975F07B34 CRC64; MAGLIDLNNA TEDDETPSSG SSSSSSSSTV CLELWHACAG PMISLPKKGS VVVYFPQGHL EQHLHDFPLP ASANIPSHVF CRVLDVKLHA EEGSDEVYCQ VVLVPESEQV QQKLREGEFD ADGEEEDAEA VMKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YSQQRPSQEL VAKDLHGQEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGE DGELRLGIRR AAQLKSGSTF SALSGQQGSP TSLMDVVNAL SARCAFSIHY NPRVSSSEFI IPIHRFVKSL DYSYSAGMRF RMRFETEDAA ERRFTGLIVG IADVDPVRWP GSRWRCLMVR WDDLEATRHN RVSPWEIEPS GSASTANNLM SAGLKRTKIG LPSAKLDFPV SNAIGTSDFG ESLRFQKVLQ GQEMLGVNTT YDSFNAQSHQ LSDLRRCYPG SNYPRIAATG NSIGISQVSS NVSNNGIGFS ESFRFQKVLQ GQEILPSQPY GRALSVDEAC GNGRFGLFDG FQAMRSRNGW SSHVSNNSSH LHPPVPSGQV SSPSSVFMFQ QAVNPVLNSD YNNQIGQVMG DKVHQRVSYA SEVKGGKFVS TPYEPLLRGL SQEGTNSFGL SNFHNQLDSS RSHDSVSVLR ASQELVPSCK SRCRVFGFSL TEGAPVASKE ATDSSAVACA GPSFTRHVED DFHPGHSLRS KAVASYCTKG VLQY // ID I1M1J4_SOYBN Unreviewed; 896 AA. AC I1M1J4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100798719 {ECO:0000313|EnsemblPlants:GLYMA13G29320.1}; GN ORFNames=GLYMA_13G221400 {ECO:0000313|EMBL:KRH21113.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G29320.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G29320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G29320.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH21113.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21113.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G29320.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G29320.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH21113.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21113.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH21113.1; -; Genomic_DNA. DR RefSeq; XP_006594517.1; XM_006594454.2. DR UniGene; Gma.59213; -. DR STRING; 3847.GLYMA13G29320.1; -. DR EnsemblPlants; GLYMA13G29320.1; GLYMA13G29320.1; GLYMA13G29320. DR GeneID; 100798719; -. DR Gramene; GLYMA13G29320.1; GLYMA13G29320.1; GLYMA13G29320. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1M1J4; -. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 763 847 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 896 AA; 99837 MW; 68874DFB4603E7BC CRC64; MRLSSAGFSP PPQEGENRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHAGMKD DDFGPNSPLL WLRDPDRGLP SLNFQGIGIN PWMQPRFDPT MLNMQTDMYQ AAAVQDMRSL DPSKQHSASL LPFQQPQNFP NRTAALMQAQ MLQQSQPQQI FGNTQENQHS PQSQAHLQQH LQHQHSFNSQ HHHHHQQQQQ RQQHQVVDNQ QISSAVSTMS QFVSAPQPQS PPMQVISSMC QQQNFSDSNG NTVTTIVSPL HSILGSFPQD ETSHLLNLPR TSSWIPVQNS SGWPSKRVAV DPLLSSGASQ CVLPQVEQLG QPQSTMSQNA ISLPPFPGRE CSIDQEGSND PQNHLLFGVN IEPSSLLMPN GMSSLKGVCG NNGSSTLPYQ SSNYLNTTTR TDSSLNHGMT PNIGDSGFLQ CLEEAGQGNP LNKTFVKVYK SGSFGRSLDI TKFSSYHELR GELARMFGLE GELEDPVRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI KILSPQEVQQ MGNNGLELLN SFPIQRLSNG ICDDYVSRQD PRNLGTGITT VGSLDY // ID I1M1J5_SOYBN Unreviewed; 895 AA. AC I1M1J5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100798719 {ECO:0000313|EnsemblPlants:GLYMA13G29320.2}; GN ORFNames=GLYMA_13G221400 {ECO:0000313|EMBL:KRH21114.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G29320.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G29320.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G29320.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH21114.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21114.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G29320.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G29320.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH21114.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21114.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH21114.1; -; Genomic_DNA. DR RefSeq; XP_003542951.1; XM_003542903.3. DR UniGene; Gma.59213; -. DR EnsemblPlants; GLYMA13G29320.2; GLYMA13G29320.2; GLYMA13G29320. DR GeneID; 100798719; -. DR Gramene; GLYMA13G29320.2; GLYMA13G29320.2; GLYMA13G29320. DR KEGG; gmx:100798719; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 762 846 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 895 AA; 99766 MW; 928918BCCA964EAD CRC64; MRLSSAGFSP PPQEGENRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD DFGPNSPLLW LRDPDRGLPS LNFQGIGINP WMQPRFDPTM LNMQTDMYQA AAVQDMRSLD PSKQHSASLL PFQQPQNFPN RTAALMQAQM LQQSQPQQIF GNTQENQHSP QSQAHLQQHL QHQHSFNSQH HHHHQQQQQR QQHQVVDNQQ ISSAVSTMSQ FVSAPQPQSP PMQVISSMCQ QQNFSDSNGN TVTTIVSPLH SILGSFPQDE TSHLLNLPRT SSWIPVQNSS GWPSKRVAVD PLLSSGASQC VLPQVEQLGQ PQSTMSQNAI SLPPFPGREC SIDQEGSNDP QNHLLFGVNI EPSSLLMPNG MSSLKGVCGN NGSSTLPYQS SNYLNTTTRT DSSLNHGMTP NIGDSGFLQC LEEAGQGNPL NKTFVKVYKS GSFGRSLDIT KFSSYHELRG ELARMFGLEG ELEDPVRSGW QLVFVDREND VLLLGDGPWP EFVNSVWCIK ILSPQEVQQM GNNGLELLNS FPIQRLSNGI CDDYVSRQDP RNLGTGITTV GSLDY // ID I1M1Y1_SOYBN Unreviewed; 736 AA. AC I1M1Y1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100789906 {ECO:0000313|EnsemblPlants:GLYMA13G30750.1}; GN ORFNames=GLYMA_13G234200 {ECO:0000313|EMBL:KRH21341.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G30750.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G30750.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G30750.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH21341.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21341.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G30750.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G30750.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH21341.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21341.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH21341.1; -; Genomic_DNA. DR RefSeq; XP_003543018.1; XM_003542970.3. DR STRING; 3847.GLYMA13G30750.1; -. DR EnsemblPlants; GLYMA13G30750.1; GLYMA13G30750.1; GLYMA13G30750. DR GeneID; 100789906; -. DR Gramene; GLYMA13G30750.1; GLYMA13G30750.1; GLYMA13G30750. DR KEGG; gmx:100789906; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; I1M1Y1; -. DR KO; K14486; -. DR OMA; QSPRLYE; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 736 AA; 80447 MW; 60046075A1D1964E CRC64; MGLIDLNTTE DDEAAPLSAS SPASYSSSSS HSGISTSAST LVVPPTPPSV CLELWHACAG PLISLPKKGS VVVYLPQGHF EHVQDFPVTA YDIPPHVFCR VLDVKLHAEE GSDEVYCQVL LVPESEQVEQ SLREGEIVAD GEEEDTEAIV KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QQRPSQELVA KDLHGLEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGDDG ELRLGIRRAA QLKSAGSFAV PSGQQLNPAT LKGVVNALST RCAFSVCYNP RFSSSEFIIP VHKFLKSLDC SYSVGMRFRM RFETEDAAER RCTGLIAGIS DVDPVRWLGS KWRCLLVRWD DIEAARRNRV SPWEIEPSGS ASNSSNLMSA GLKRTRIGMT SVKLEFPTPD GIGASDFGES LRFRKVLQGQ EILGVNTPFD GINAQSPRLY ELGRCYPGSN CSGIPPTGNN IRMPHPASDF SCNGIGFSES FRFQKVLQGQ EILPSQPYGR VLSIEEARAN GCYGLYDGCQ LLNTRNGWSA QMHDNAPYLH ASVTPAQVSS PSSVLMFQQA VNPVSNCDYN KNKRDKEMEG RVHYQGLYTS EVKGRTFASS PFDDPILSTL APEGASSLGM FDVHNQLGSS RPHESVSALR SSQELVSSCK SSCRLFGFSL TEDTHLAKKE ASASTITLPL SSGPSFTRLV EDEFHPGHSL PSKGVGSNCT KGVLQY // ID I1M2C3_SOYBN Unreviewed; 879 AA. AC I1M2C3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 07-JUN-2017, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH21568.1, ECO:0000313|EnsemblPlants:GLYMA13G31970.1}; GN Name=LOC100782114 {ECO:0000313|EnsemblPlants:GLYMA13G31970.1}; GN ORFNames=GLYMA_13G245900 {ECO:0000313|EMBL:KRH21568.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G31970.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G31970.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G31970.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH21568.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21568.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G31970.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G31970.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH21568.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH21568.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH21568.1; -; Genomic_DNA. DR RefSeq; XP_006594624.1; XM_006594561.2. DR STRING; 3847.GLYMA13G31970.1; -. DR EnsemblPlants; GLYMA13G31970.1; GLYMA13G31970.1; GLYMA13G31970. DR GeneID; 100782114; -. DR Gramene; GLYMA13G31970.1; GLYMA13G31970.1; GLYMA13G31970. DR KEGG; gmx:100782114; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; I1M2C3; -. DR OMA; LACHEIG; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 563 613 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 879 AA; 96869 MW; 83067C0FD9B04617 CRC64; MASASSSSSK LCFNSDCKEL KSERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA SGWRSCETCL KRIHCGCIVS SHAFMLLDPG GIECYACARK SIILPSNLPW PQSFSLQNRL SDRLRDLSAK GWSQLAGSGP VPWKQAPSLF NSASSSDLIP EVPSLVELSN SFDKMYCNER LPASALEKKN EDLSGIPVNW NVKLGSREMM LMNGMRNEDK SSSCLNMCQQ PSSLKEESSP QPFGLAVPNS CQNERNGQLG VTGSHPQQTP PPPGKQFNGT MHLAPDSSGE AQIRNGRPRA DSRGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRLEPEGRLV MGFRKASSVM PSDQDNETKT GNGFSAHGEV ELADPNSWSK VDKSGYIAKE ALGSKSLISR KRKSNILSSK SKRLRIENED LIELKITWQE AQGLLRPPPS HIPSIVVIEG FEFEEYEEAP VLGKPTIFTS DSVGEKIQWA QCEDCFKWRK LPASALLPSK WTCSDNSWDP ERFSCSAAQE LTAEQLENLL PPCNSAVPKK MKATKQDPDN AEALEGLDTL ANLAILGEGE ALPASAQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT CNVCLTVKRR FRTLMLRREK KQSEKEAETT RKKQQQQHPL PLPSSEILLD EDSLPCSNTG DSSPNQNKEG NDGSDDDPSR IKSSASPFKG KIDLNIQPER EEELSPGSDS GGMMKLLHDA TERYLKQQTV NSGTGDSSGS QSQLVGDAMR EDKLSNGVAH GSSSHNTDKE HAQSLPMNV // ID I1M4J8_SOYBN Unreviewed; 670 AA. AC I1M4J8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100808472 {ECO:0000313|EnsemblPlants:GLYMA13G40030.1}; GN ORFNames=GLYMA_13G325200 {ECO:0000313|EMBL:KRH22880.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G40030.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G40030.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G40030.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH22880.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH22880.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G40030.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G40030.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH22880.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH22880.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH22880.1; -; Genomic_DNA. DR RefSeq; XP_003543470.1; XM_003543422.3. DR EnsemblPlants; GLYMA13G40030.1; GLYMA13G40030.1; GLYMA13G40030. DR GeneID; 100808472; -. DR Gramene; GLYMA13G40030.1; GLYMA13G40030.1; GLYMA13G40030. DR KEGG; gmx:100808472; -. DR InParanoid; I1M4J8; -. DR OMA; RNDNISC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 557 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 110 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 670 AA; 73760 MW; 648CC153C74EA27F CRC64; MKETDKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNVDFGAA RIPIPPLILC RVAAVKFLAD PETDEVFARL RLVPLRNSEL DYEDSDANGE AEGSEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTV IARDVHGEVW KFRHIYRGTP RRHLLTTGWS SFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGGVGGPE GPCGWSSYGS GGLGLGPYGA FSGFMREESG RAKVSGESVR EAVTLAASNQ AFEVVYYPRA NTPEFCIRTS AVRGAMRIQW CSGMRFKMPF ETEDSSRISW FMGTIASVQV LDPIRWPNSP WRLLQVSWDE PDLLHNVKRV SPWLVELVSN VPIIHLAAFS PPRKKLRFPL DVQFPIPSFS GNPFGSSSSS SPFCCLSDNA PAGIQGARHS QIGISLSDLH LNNKLQLGLL PTKVHQLNLH AGISNAKSKE SLSSLLSMGN SNMTLEKSDH VKRHHFLLFG QPILTEQQIS RSSSDVATDD ENKEKKKKGF LSDSQSSVSP GNLSSTAEFS WQLGSDTSHC KVFMESEDVG RTLDLSCLSS YQELYMRLAN MFGIERSDML SHVLYCDSSG ALKQIGEEPF SEFMKTAKRL TILTDSNNKD SRRVWITGTR NAEHGLDAAS NKTGPLSIFA // ID I1M4M7_SOYBN Unreviewed; 764 AA. AC I1M4M7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G40310.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G40310.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G40310.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA13G40310.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G40310.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3847.GLYMA13G40310.1; -. DR EnsemblPlants; GLYMA13G40310.1; GLYMA13G40310.1; GLYMA13G40310. DR Gramene; GLYMA13G40310.1; GLYMA13G40310.1; GLYMA13G40310. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR InParanoid; I1M4M7; -. DR OMA; FQRENIP; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 635 717 PB1. {ECO:0000259|PROSITE:PS51745}. SQ SEQUENCE 764 AA; 84735 MW; 043D89C82CC8582A CRC64; MEIDLNDDAV TSEAEKSASC NEECEKGAAF ALSSSTCSSS GSSSARVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQASSFSPFS PMEMPTYDLQ PQIFSRVVNI QLLYLEGKEL EELGTDEEGN EATPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPR LDYKQQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL VSEMQGENGE LRLGIRRAAR PRNGLPESIV GSQSYYPNFL SSVANAISAK SMFHVFYSPR ASHADFVVPY QKYIKSIKNP VTIGTRFKMK FEMDESPERR CTSGIVTGMS DLDPYKWPKS KWRCLMVRWD EDIEISHQDR VSPWEIDPSS SLPPLSIQSS RRLKKLRPGL QAATPSHLTT AGGSGFMDSE ESVRSSKVLQ GQENTGFMSL YYGCDKVTKQ PEFEIRSPSH PNLASTGVRK ISAAEFMRVH PSSFAGFSET NIVPRVLHGQ EISVGAKPNV SYSNNNLHQA TKPSFHSLGP EVIQTAYFPY GDIHNAGQGS SILCSKPTNF QRENIPFNTP STQSGIMRNE VGRSDITIPN EQKLQDNISG TASLGANMRI PKDDNFKGQV KACKLFGISL SGETTAQNLQ NSAKRSCTKV HKQGSLVGRA IDLSRLSSYN DLLIELERLF SMEGLLIDPN KGWRILYTDS ENDIMVVGDD PWHEFCDVVS KIHIHTQDEV EKMTIGMMIN DDTQSCLEQA PVTMEASKSS SVGQPDSSPT VVRM // ID I1M725_SOYBN Unreviewed; 896 AA. AC I1M725; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100810798 {ECO:0000313|EnsemblPlants:GLYMA14G03650.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G03650.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G03650.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G03650.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA14G03650.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G03650.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3847.GLYMA14G03650.1; -. DR EnsemblPlants; GLYMA14G03650.1; GLYMA14G03650.1; GLYMA14G03650. DR Gramene; GLYMA14G03650.1; GLYMA14G03650.1; GLYMA14G03650. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1M725; -. DR OMA; PELYQAM; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 14. DR ExpressionAtlas; I1M725; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 760 846 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 896 AA; 98726 MW; 4EF7AC0310B7A476 CRC64; MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPLVG SRVVYFPQGH SEQVAASTNR EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT PGKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRISVGMRF RMLFETEESS VPRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLRRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL GVTPWMQPRL DASIPGLQPE LYQAMASSAF QEIRTMDPSK SSQSLLQFQQ TSNVPSAHAS EVQRQVLPQS QPQNTLLHNY QENQVPAQSQ LLQQQLHRYH PYSDPRQQQQ QLKNLPVQQQ LPNVISPLSN FASGTQSQSP PIQALASHCQ QQSFPELMRN HISGSDVSSI HSLLGSFSQD GTSQLLNLSG SNSVMSSAAM LPKQITTEPP QLPSAAPQCV LPQVENLGTS QSNVSELAAL PPFAGREHSA YHAAADPQSN LLFGINIDPS SLMLQNGMSN LRNIGNVNNS LSLPFSASNC GGASGTDFPL SSNMTTSSCV DESGFLQSSE NVDQANTPTG TFVKVHKSGS FGRSLDISKF SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKGLSPSTSA PGNKLSTPAN SCDNYVSQQE LRSSRNGMAS MGSFHY // ID I1M726_SOYBN Unreviewed; 866 AA. AC I1M726; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100810798 {ECO:0000313|EnsemblPlants:GLYMA14G03650.2}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G03650.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G03650.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G03650.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA14G03650.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G03650.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA14G03650.2; GLYMA14G03650.2; GLYMA14G03650. DR Gramene; GLYMA14G03650.2; GLYMA14G03650.2; GLYMA14G03650. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000008827; Chromosome 14. DR ExpressionAtlas; I1M726; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 760 846 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 866 AA; 95415 MW; 2A32CEC44630075C CRC64; MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPLVG SRVVYFPQGH SEQVAASTNR EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT PGKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRISVGMRF RMLFETEESS VPRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLRRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL GVTPWMQPRL DASIPGLQPE LYQAMASSAF QEIRTMDPSK SSQSLLQFQQ TSNVPSAHAS EVQRQVLPQS QPQNTLLHNY QENQVPAQSQ LLQQQLHRYH PYSDPRQQQQ QLKNLPVQQQ LPNVISPLSN FASGTQSQSP PIQALASHCQ QQSFPELMRN HISGSDVSSI HSLLGSFSQD GTSQLLNLSG SNSVMSSAAM LPKQITTEPP QLPSAAPQCV LPQVENLGTS QSNVSELAAL PPFAGREHSA YHAAADPQSN LLFGINIDPS SLMLQNGMSN LRNIGNVNNS LSLPFSASNC GGASGTDFPL SSNMTTSSCV DESGFLQSSE NVDQANTPTG TFVKVHKSGS FGRSLDISKF SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKGLSPSTSA PGHSPM // ID I1M8H8_SOYBN Unreviewed; 444 AA. AC I1M8H8; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G08630.1}; GN Name=LOC100813851 {ECO:0000313|EnsemblPlants:GLYMA14G08630.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G08630.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G08630.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G08630.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA14G08630.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G08630.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA14G08630.1; GLYMA14G08630.1; GLYMA14G08630. DR Gramene; GLYMA14G08630.1; GLYMA14G08630.1; GLYMA14G08630. DR Proteomes; UP000008827; Chromosome 14. DR ExpressionAtlas; I1M8H8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 444 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5003646851. FT DOMAIN 57 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 346 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 346 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 444 AA; 49638 MW; A57DBCF4062278D4 CRC64; STLWFVCSVL LNSHSTLSQT VKFCNFFSSL IVGEMVGQNC DGCRSWEEDI YWSHFQFLHF VQFLHADYDQ HLALPKTFSD NLKKKLPENV TLKGPGGVMW NIGMTTRDDT LYFGHGWEQF VKDHCLKEND FLVFKYNGGS LNKKRDTDND SLEEGNIPSN AGVECALHEK SAHVNGTKEP IDVPPETPPT ENTFNAGVES SGVEQFTPDG GVTLAAVPSE TANGKRIRNI VSAVKHVHTK RKGRPAKWHV RERTLDWVAA LEAEPVSASR SGTYEVYKSN RRPVTDDETR KIESLAKAAC TDDSIYVVMK PTHVYKRFFV SIRGTWIGKH ISPSSQDVIL RMGKGEWIAR YSYNNIRNNG GLTGGWKHFS LDSNLEEGDA CVFKPAGQIN NTFVIDMSIF RVVPETVPLT PMSRGTRTGT RTGTGRRGRK PATMKSIQTQ LSSP // ID I1MAN4_SOYBN Unreviewed; 519 AA. AC I1MAN4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G33730.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G33730.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G33730.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA14G33730.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G33730.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3847.GLYMA14G33730.1; -. DR EnsemblPlants; GLYMA14G33730.1; GLYMA14G33730.1; GLYMA14G33730. DR Gramene; GLYMA14G33730.1; GLYMA14G33730.1; GLYMA14G33730. DR eggNOG; ENOG410IJN8; Eukaryota. DR eggNOG; ENOG410ZJKK; LUCA. DR InParanoid; I1MAN4; -. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000008827; Chromosome 14. DR ExpressionAtlas; I1MAN4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 145 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 519 AA; 57239 MW; F8B83449BE73A6FA CRC64; MSPPQPRRVD PKIWRACAGA AVQIPKLHSR VYYFPQGHLE HASPSHYLNP LLRSLPFVPC HVSSLDFLAD PFSDEVFAKF LLTPLSQQPF PNDTTEARNE EEKDRENGVV SFSKILTPSD ANNGGGFSVP RYLALRHIYR GTPRRHLFTT GWSKFVNHKK LVAGDTVVFV KDSDGRVSVG IRRAARFAAA IETPQPPPAE REGFSRSATG RVTAEAVAAA AESAARNAPF EVVYYPRTGF ADFVVSAEVV EESMKCAWVG GMRVKIAMET EDSSRMTWFQ GTVSSACASE NGPWRMLQVN WDEPEVLQNA KRVSPWQVEL VSLPFALHTV YSPNKRLRSD QGSGLLSNRE GDPFFPMTGF PNSTMEHMTG FPNSTVGHMD KSLLSYDTFP AGMQGARHDL FSPSSFSNFL NDKSYLYMGS GSFGNNPVQS LGTVTTELNM SSSQSDDLSP HSQSSFHSFA REFAGTRNCD TKVASGSILL FGKIIQPAES DLHDGDCMER DGSRGSNKLK TVEACYFSK // ID I1MBP7_SOYBN Unreviewed; 843 AA. AC I1MBP7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100784804 {ECO:0000313|EnsemblPlants:GLYMA14G38940.1}; GN ORFNames=GLYMA_14G208500 {ECO:0000313|EMBL:KRH17251.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G38940.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G38940.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G38940.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH17251.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH17251.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA14G38940.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G38940.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH17251.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH17251.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000847; KRH17251.1; -; Genomic_DNA. DR RefSeq; XP_006596491.1; XM_006596428.2. DR STRING; 3847.GLYMA14G38940.1; -. DR EnsemblPlants; GLYMA14G38940.1; GLYMA14G38940.1; GLYMA14G38940. DR GeneID; 100784804; -. DR Gramene; GLYMA14G38940.1; GLYMA14G38940.1; GLYMA14G38940. DR KEGG; gmx:100784804; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1MBP7; -. DR OMA; PHHQYLQ; -. DR OrthoDB; \N; -. DR Proteomes; UP000008827; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 717 801 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93795 MW; 031334E340C2D8FF CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLVCQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGVP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSFHDGRD EATNGLMWLR GGPGDQALNS LNFQGSGLLP WMQQRMDPTL LGNDHNQQYQ AMFASGLQNL GSGDLMRQQM MNFQQPFNYL QQSGNPNLPL QLQQPQAVQQ SVSSNNILQP QAQVLAENLS QHLQKSHNNR EDQTQQQQHT YQDTVLLQSD QLHQRQHSGL PSPSYSKPDF LDSSMKFPAS VSPGQNMLGS LCPEGSGNLL NLSRSSQSML TEQLPQQSWA PKFTPLQINA FGNSMQHVQY SGKDTAMVPP HCNPDSQNPI LFGVNIDSSG LLLPTTVPRY TTASAEIDAS AMPIGESGFQ SPLYPCVQDS SELVQSAGQV DPQNQTRTFV KVYKSGSVGR SLDISRFSSY HELREELAQM FGIEGKLEDP LRSGWQLVFV DRENDVLLLG DDPWESFVNN VWYIKILSPE DIHKMGEQAV ESLGPSSGHR LNSTGADSHE IVSGLPSIGS LEY // ID I1MC56_SOYBN Unreviewed; 930 AA. AC I1MC56; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100790289 {ECO:0000313|EnsemblPlants:GLYMA14G40540.1}; GN ORFNames=GLYMA_14G217700 {ECO:0000313|EMBL:KRH17404.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G40540.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G40540.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G40540.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH17404.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH17404.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA14G40540.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G40540.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH17404.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH17404.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000847; KRH17404.1; -; Genomic_DNA. DR RefSeq; XP_003544394.2; XM_003544346.3. DR STRING; 3847.GLYMA14G40540.1; -. DR EnsemblPlants; GLYMA14G40540.1; GLYMA14G40540.1; GLYMA14G40540. DR GeneID; 100790289; -. DR Gramene; GLYMA14G40540.1; GLYMA14G40540.1; GLYMA14G40540. DR KEGG; gmx:100790289; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; I1MC56; -. DR KO; K14486; -. DR OMA; INTELWH; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000008827; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 824 908 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 930 AA; 103499 MW; 14EBE503B1E29231 CRC64; MMASVEEKIK TGGGMIVGGQ TLAAEMKLLK EMQEHSGVRK TLNSELWHAC AGPLVSLPQV GSLVFYFPQG HSEQVAASTR RTATSQIPNY PNLPYQLLCQ VQNVTLHADK ETDEIYAQMT LQPLNSEREV FPISDFGHKH SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYT IQPPTQELVV RDLHDNTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDERS QLRVGVRRVN RQQTTLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RACPSEFVIP LAKYRKSVFG TQVSVGMRFG MMFETEESGK RRYMGTIVGI SDVDPLRWPG SKWRNIQVEW DEPGCGDKQN RVSVWEIETP ESLFIFPSLT SGLKRPLPSG LLENEWGTLL RRPFIRVPEN GTMELSNSIP NLYSEHMMRM LLKPQLINNN GAFLSAMQQE SAATRGPLQE MKTTLAAENQ MPLKNLHPHS IPDQPNALNM QSLLKNDQPE KLHPLGKIDN HLSSGIVIDK PKSESEVLPD HVIDYPSMEG CNIEKVAANP VNQQGLANQL PFHNQNQSPL LPQSSPWPMP PQIELSMPHP QMIDMVQADS AMVNGLFPQL DINEWMSYAS SQPFAGQNRP TGPLSDLQEH TSLQPQVVNP PLPSMNNEVW DHYVKNLKFL SQADQLTSIC QPGLYGLNGI PSSNNLRDLS AESNNQSEIC VNVDASNSVG TTVVDPSTSS TILDEFCTMK DREFQNPQDC MVGNLSSSQD VQSQITSASL TESHAFPLRD IPDNSGGTSS SHVDFDESSF LQNNSWQQVP APIRTYTKVQ KAGSVGRSID VTTFKNYEEL IRAIECMFGL DGLLNDTKCS GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC IRILSPSEVQ QMSEEGMKLL NSGALQGMNV // ID I1MEA8_SOYBN Unreviewed; 878 AA. AC I1MEA8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 07-JUN-2017, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH10760.1, ECO:0000313|EnsemblPlants:GLYMA15G07350.1}; GN Name=LOC100807252 {ECO:0000313|EnsemblPlants:GLYMA15G07350.1}; GN ORFNames=GLYMA_15G067900 {ECO:0000313|EMBL:KRH10760.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA15G07350.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA15G07350.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G07350.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH10760.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH10760.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA15G07350.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G07350.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH10760.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH10760.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000848; KRH10760.1; -; Genomic_DNA. DR RefSeq; XP_006597399.1; XM_006597336.2. DR STRING; 3847.GLYMA15G07350.1; -. DR EnsemblPlants; GLYMA15G07350.1; GLYMA15G07350.1; GLYMA15G07350. DR GeneID; 100807252; -. DR Gramene; GLYMA15G07350.1; GLYMA15G07350.1; GLYMA15G07350. DR KEGG; gmx:100807252; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; I1MEA8; -. DR OMA; CASAYEQ; -. DR OrthoDB; \N; -. DR Proteomes; UP000008827; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 335 436 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 562 612 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 335 436 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 878 AA; 96724 MW; 460DADAEBE8F61FD CRC64; MASASSSSSK LCFNSDCKEL KSERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA SGWRSCETCR KRIHCGCIVS SHAFMLLDPG GIECYACARK SIILPSNLPW PQSFPLQNRL SDRLRDLSGK GWSQLAGSGP VPWKQAPSLF NSASSSDMIP EVPSLVELSN SFDKMYCNER LPVSALEKKN EDLSGMSVNW NIKLGSREMM LMNGMRNEDK SSSCLNMCQQ PSSLKEESSP QPFGLPVPNS CQNERNGKLG VTGSHPQQTP PPGKQFNGTM HLAPDSSGEA QVRNGRPRAD ARGRNQLLPR YWPRCTDLEL QQISIDSNSV ITPLFQKTLS ASDAGRIGRL VLPKKCAETY FPPISQPEGL PLKILDAKGK EWIFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RLEPEGRLVM GFRKASSAVP SDQDNETKTG NGFSAHGEVE LADPNSWSKV DKSGYIAKEA LGSKSLISRK RKSNILGSKS KRLRIENEDL IELKITWQEA QGLLRPPPSH IPSIVVIEGF EFEEYEEAPV LGKPTIFTSD SVGEKIQWAQ CEDCFKWRKL PASALLPSKW TCSDNSWDPE RSSCSAAQEL TAEQLENLLP PCSSAVPKKM KAAKQDPDNA EALEGLDTLA NLAILGEGEA LPASAQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF RTLMLRREKK QSEKEAETTR KKQQQQHPQP LPSSEILLDE DSLPCSNTGD SSPNQNKEGN DGSDDDPNRI KSSALPFKGQ IDLNIQPERE EELSPGSDSG GMMKLLHDAT ERYLKQQTVN SGTGDSSGSQ SRLVGDAMRE DKLSNGVAHG SGSHNTDKEH AQSLSMNV // ID I1MJS6_SOYBN Unreviewed; 665 AA. AC I1MJS6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100819023 {ECO:0000313|EnsemblPlants:GLYMA16G00220.1}; GN ORFNames=GLYMA_16G000300 {ECO:0000313|EMBL:KRH06026.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA16G00220.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA16G00220.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G00220.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH06026.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06026.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA16G00220.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G00220.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH06026.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06026.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000849; KRH06026.1; -; Genomic_DNA. DR RefSeq; XP_003548301.1; XM_003548253.2. DR STRING; 3847.GLYMA16G00220.1; -. DR EnsemblPlants; GLYMA16G00220.1; GLYMA16G00220.1; GLYMA16G00220. DR GeneID; 100819023; -. DR Gramene; GLYMA16G00220.1; GLYMA16G00220.1; GLYMA16G00220. DR KEGG; gmx:100819023; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR InParanoid; I1MJS6; -. DR KO; K14486; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 16. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 541 634 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 74193 MW; 299858166F8D5975 CRC64; MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV TSPDDPLPES PRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQHSNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM RFEGDEVPER RFSGTIVGVE DNKSLVWADS EWRSLKVQWD EPSSILRPDR VSPWELEPLV SNPPTNSQPS QRNKRSRPPI LPSTMLDSSL QGVWKSPVES APFSYRDHQH GRDVYPSTNF NSTATGFLGF GGNCSASNKS IYWSSRIENS TESFSPVAVK EFGEKRQGTA NGCRLFGIQL HDNSNSNEES LPMVSLSGRV GDDGLLPSLD AESDQHSEPS NVNRSDFPSV SCDAEKSCLR SPQESQSRQI RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEEMFDING ELCGSTKEWQ VVYTDNEDDM MMVGDDPWLE FCSIVRKIFI YTAEEVKKLS PKIGLPISEE VKPCKMDSEA VVNPGDQSSI LGPGC // ID I1MKH9_SOYBN Unreviewed; 713 AA. AC I1MKH9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100795763 {ECO:0000313|EnsemblPlants:GLYMA16G02650.1}; GN ORFNames=GLYMA_16G023600 {ECO:0000313|EMBL:KRH06450.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA16G02650.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA16G02650.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G02650.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH06450.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06450.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA16G02650.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G02650.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH06450.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06450.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000849; KRH06450.1; -; Genomic_DNA. DR RefSeq; XP_006598901.1; XM_006598838.2. DR EnsemblPlants; GLYMA16G02650.1; GLYMA16G02650.1; GLYMA16G02650. DR GeneID; 100795763; -. DR Gramene; GLYMA16G02650.1; GLYMA16G02650.1; GLYMA16G02650. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR Proteomes; UP000008827; Chromosome 16. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 593 674 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 713 AA; 79224 MW; 2CC1917C33C84E60 CRC64; MAHLGCCNLG GPGSSGTSLP EKGLKDDDLY RELWKLCAGP LVDVPRTGDR VFYFPQGHME QLQASTDQEL NQEIPHFNLP AKIFCRVVNI QLLAEQDTDE VYACIALLPE SDQTEPTNPD PNISEPPKQK FHSFCKILTA SDTSTHGGFS VLRKHATECL PALDMTQATP TQELAAKDLH GFEWKFKHIY RGQPRRHLLT TGWSTFVASK RLVAGDAFVF LRGEHGQLRV GVRRLARQQS PMPSSVISSQ SMHLGVLATA SHAVMTRTMF LVYYKPRTSQ FIVGLNKYLE AVNNKFSLGM RFKMRFEGDD SPERRFSGTI VGVGDVSAGW SNSQWRSLKV QWDEPATIPR PDRVSCWEIE PFVASTALNV TQPAVKGKRS RPADVSSSGF WYHGSSNELS QLGAATAEVQ SKENQVVPCS LRQKDIINSN PIDANNSSIS SRVRMEGVWP SSPHLNVTPN LFSDPNNNSV LARSPISGYL NVPSRSSDGP TCEHVEDGKK IENSLDCWLF GVNLTNNCSN VIITTPSERE LRGPISSSVA PSGPKESIPA AACETERVQT PNYSLSNKGQ KQIISEASPN EWQNKQATVP SMRTRTKVQM QGVAVGRAFD LTTLSGYDDL IEELEKLFEI RGELHSQDKW AVTFTDDEND MMLVGDDPWP EFCNMVKRIF ICSREDLKKM KCCKLPASSS EVEEVLLSPD SQNRDETQQS HMP // ID I1ML85_SOYBN Unreviewed; 316 AA. AC I1ML85; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH06799.1, ECO:0000313|EnsemblPlants:GLYMA16G05110.1}; GN Name=LOC100793469 {ECO:0000313|EnsemblPlants:GLYMA16G05110.1}; GN ORFNames=GLYMA_16G046700 {ECO:0000313|EMBL:KRH06799.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA16G05110.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA16G05110.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G05110.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH06799.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06799.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA16G05110.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G05110.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH06799.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06799.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000849; KRH06799.1; -; Genomic_DNA. DR RefSeq; XP_006598994.1; XM_006598931.2. DR EnsemblPlants; GLYMA16G05110.1; GLYMA16G05110.1; GLYMA16G05110. DR GeneID; 100793469; -. DR Gramene; GLYMA16G05110.1; GLYMA16G05110.1; GLYMA16G05110. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; I1ML85; -. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 16. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 203 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 203 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 36359 MW; 6D1D7F526F1FCFFE CRC64; MEAATFPHQL QVKPFHFFKI ITAQNLQDGK LMIPNKFVEK YGEGLPNALF LKTPNGTEWN FNLEKHDGKI WFQKGWKEFA EYHSLAHGHL LVFRRHGTSH FQVHIFDLSS LEIDYPSKGT EGKTSPNHEG NKQPRNEENL EYLQPYQVRS HKSVKVENMM TLPEEAQPHT DTKFKEKSKV VVANQVTALD LASSFKPCNP FFLVVMRPSY IQSNGGPLPL QTKFCRRHFG LLNKRHINLQ VLNGRIWPAK YMIQKMKNKT NFRLTSGWKT FVKDNNLKVG NVCTFELIDG TKLTLLVHIF RGTNGSNCST SQACQE // ID I1MS55_SOYBN Unreviewed; 1136 AA. AC I1MS55; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100816054 {ECO:0000313|EnsemblPlants:GLYMA17G05220.1}; GN ORFNames=GLYMA_17G047100 {ECO:0000313|EMBL:KRH02575.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA17G05220.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA17G05220.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G05220.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH02575.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH02575.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA17G05220.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G05220.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH02575.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH02575.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000850; KRH02575.1; -; Genomic_DNA. DR RefSeq; XP_003551063.1; XM_003551015.3. DR STRING; 3847.GLYMA17G05220.1; -. DR EnsemblPlants; GLYMA17G05220.1; GLYMA17G05220.1; GLYMA17G05220. DR GeneID; 100816054; -. DR Gramene; GLYMA17G05220.1; GLYMA17G05220.1; GLYMA17G05220. DR KEGG; gmx:100816054; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; I1MS55; -. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000008827; Chromosome 17. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1008 1101 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 494 531 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1136 AA; 127058 MW; 5157979DE3AEA46C CRC64; MKAPSNGYLP NSGEGERKTM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDIGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK ILPPLDYSMQ PPAQELVAKD LHDNTWAFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRGY MGTITGISDL DPVRWKSSQW RNIQVGWDES TAGERPRRVS IWEIEPVVTP FYICPPPFFR PKFPRQPGMP DDESDMENAF KRAVPWLGDD FGMKDASSSI FPGFSLMQWM SMQQNNQLSA AQSGCFPSML SSNTLQGNLS TDDPSKLLSF QAPVLSTPSL QLNKPNLPNQ INQLQQSPVS WPQQQQLQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQLQSLLQ IPMNQLQQQR QQQLPEPQNL PLLQQLPQHL GQQPQKQQQS SQHATIMNNG VVASNQITNQ FAQQPMAYGQ LQQQQLLSGG IQPQQGIQSA TKNTFPLTSL PQDSQFQQQI DQQASLLQRQ QQQQQTQLQQ SPLQLLQQNL PQRALQQPPA TQMLQQNPSE QQLHLQLLQK LQQQQQQQLL STSTPLLQSQ LLQQQNTHQQ NQQSLQPLLP ISQHQPQQLG NNAFSTEKLL NSNNFSSSLT QSQQLSMNQP QNTQKSHTIT RAPSTLTDGD APSCSTSPST NNCQVSPPNL LKRNQQIPAT LGGGLIVEPT SNLIQELHSK PDTQIKQELL NVKGPDQLKY KGTITDPLEA SSSGTSYCLD PGNVQQNLPL SNFCMERDVQ SHPRNSLPFD SNLDGLTPDT MLLRGYDSQK DLQNLLSNYA SAPRDIETEL STADISSQSF GVPNMPFKPG CSSDVGINDT GVLNNNNGLR TNQTPRMRTY TKVQKRGSVG RCIDVTRYKG YDELRHDLAR MFGIEGQLED PLRTDWKLVY VDHENDILLV GDDPWDEFVS CVQSIKILSS AEVQQMSLDG DLGGNVPIPN QACSGTDSGN AWRGQYEDNS AASFNR // ID I1MY19_SOYBN Unreviewed; 933 AA. AC I1MY19; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100813003 {ECO:0000313|EnsemblPlants:GLYMA17G37580.1}; GN ORFNames=GLYMA_17G256500 {ECO:0000313|EMBL:KRH05923.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA17G37580.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA17G37580.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G37580.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH05923.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH05923.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA17G37580.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G37580.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH05923.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH05923.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000850; KRH05923.1; -; Genomic_DNA. DR RefSeq; XP_006601343.1; XM_006601280.2. DR STRING; 3847.GLYMA17G37580.1; -. DR EnsemblPlants; GLYMA17G37580.1; GLYMA17G37580.1; GLYMA17G37580. DR GeneID; 100813003; -. DR Gramene; GLYMA17G37580.1; GLYMA17G37580.1; GLYMA17G37580. DR KEGG; gmx:100813003; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; I1MY19; -. DR KO; K14486; -. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000008827; Chromosome 17. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 827 911 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 933 AA; 103492 MW; CEF5DC6E42C8D4E1 CRC64; MMASVEEKIK TGGVGGGMVV GGQTLVAEMK LLKEMQEHSG VRKTLNSELW HACAGPLVSL PQVGSLVFYF PQGHSEQVAA STRRTATSQI PNYPNLPSQL LCQVQNATLH ADKETDEIYA QMTLQPLNSE REVFPISDFG LKHSKHPSEF FCKTLTASDT STHGGFSVPR RAAEKLFPPL DYTIQPPTQE LVVRDLHDNT WTFRHIYRGQ PKRHLLTTGW SLFVGSKRLR AGDSVLFIRD EKSQLRVGVR RVNRQQTTLP SSVLSADSMH IGVLAAAAHA AANRSPFTIF YNPRACPSEF VIPLAKYRKS VFGTQVSVGM RFGMMFETEE SGKRRYMGTI VGISDVDPLR WPGSKWRNIQ VEWDEPGCGD KQNRVSVWEI ETPESLFIFP SLTSGLKRPL PSGLLENEWG TLLTRPFIRV PENGTMELSN SIPNLYSEHM MKMLFKPQLI NNNGAFLSAM QQESAATRGP LQEMKTTLAA ENQMLLKNLH PQSIPDQPNA LNMQSLLKND QPEKFHPLAK IDNHLPSGIV IDKPKLECEV LPDRVIDYPS MEGCNNEKVA VNPVNQQGLA TQLPFHNQNQ SPLLPQSSPW PMQPLIESSM PHPQMIGMAQ ADSAMVNGLF PQLDIDEWLA YASSQPFAGQ NRPTGPFSDL QEHNSLQPQV VNPPLPSMNN EVWDHYVKNF KFLSQADQLT SICQPGMYGL NGVPSSNNLR DLSAESNNQS EICVNVDASN SVGTTMVDPS TSSTILDEFC TMKDGEFQNP QDCMVGNLSS SQDVQSQITS ASLAESHAYP LRDIPDNSGG TSSSHVDFDE SSFLQNNSWQ QVPAPIRTYT KVQKAGSVGR SIDVTTFKNY EELIRAIECM FGLDGLLNDT KGSGWKLVYV DYESDVLLVG DDPWEEFVGC VRCIRILSPS EVQQMSEEGM KLLNSGALQG MNV // ID I1MZK6_SOYBN Unreviewed; 841 AA. AC I1MZK6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100814479 {ECO:0000313|EnsemblPlants:GLYMA18G05330.1}; GN ORFNames=GLYMA_18G046800 {ECO:0000313|EMBL:KRG98044.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G05330.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G05330.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G05330.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG98044.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98044.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA18G05330.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G05330.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG98044.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98044.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000851; KRG98044.1; -; Genomic_DNA. DR RefSeq; XP_003553137.1; XM_003553089.3. DR STRING; 3847.GLYMA18G05330.1; -. DR EnsemblPlants; GLYMA18G05330.1; GLYMA18G05330.1; GLYMA18G05330. DR GeneID; 100814479; -. DR Gramene; GLYMA18G05330.1; GLYMA18G05330.1; GLYMA18G05330. DR KEGG; gmx:100814479; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; I1MZK6; -. DR OMA; LDENIML; -. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 799 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 841 AA; 93248 MW; C59AE811EFB48734 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EIDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLSMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA RDLHDAEWKF RHIFRGQPKR HLLTTGWSIF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSLHDGRD EATNGLMWMR GGPVDQGLNS LNFQGAGMLP WMQQRLDPTL LGNDQNQQYQ AMLAAGLQNL GSGYLMKQQM MNFQQPYHYL QQSGNSNSPL QLQQQQPIQQ SVSSNMLQPQ AHVLTENLSQ HLLQKPHNNQ EVQAQQQQHT YQDSLLIPSD QLHQRQHSGI PSPSYSKPDF LDSSMKFPAS VSPGQNMLSS LCPEGSGSLL NLSRSSLSLL TEQLPQQQWT QKYAPVQVNT YGGTVSHAQY SGKDSAMVLP HCNSDAQNST LFGVNIDSSG LLPITVPGYT TSSADTNSST MPLADSGFQG SLYGCMDSSE LLQSAGHVDP ENQSQTFVKV YKSGSVGRSL DISRFSSYHE LREELAQMFG IEGKLEDPLR SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDI QKMGEQAVES LALGSGQRLN GTGAESQDIV SGPPSIGSLE Y // ID I1N2J8_SOYBN Unreviewed; 664 AA. AC I1N2J8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 42. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100780060 {ECO:0000313|EnsemblPlants:GLYMA18G40180.1}; GN ORFNames=GLYMA_18G184500 {ECO:0000313|EMBL:KRH00001.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G40180.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G40180.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G40180.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH00001.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH00001.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA18G40180.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G40180.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH00001.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH00001.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000851; KRH00001.1; -; Genomic_DNA. DR RefSeq; XP_003552183.1; XM_003552135.3. DR STRING; 3847.GLYMA18G40180.1; -. DR EnsemblPlants; GLYMA18G40180.1; GLYMA18G40180.1; GLYMA18G40180. DR GeneID; 100780060; -. DR Gramene; GLYMA18G40180.1; GLYMA18G40180.1; GLYMA18G40180. DR KEGG; gmx:100780060; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; I1N2J8; -. DR KO; K14486; -. DR OMA; CHRDANE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 554 635 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 74553 MW; 6E7C4FDE272BA06E CRC64; MSLNRGGGGE EDELYEQLWK ACAGPHVEVP RTGQRVFYFP QGHMEQLEVS TNQELNQRIP LFKLPSKILC RVVNVHLLAE QETDEVYAQI TLVPESNQAE PMSPDPCPAE LPSPRVHSFC KVLTASDTST HGGFSVLRKH ATECLPALDM SKSTPTQELV AKDLQGYEWR FKHIFRGQPR RHLLTTGWSN FVTSKRLVAG DTFVFLRGNN GELRVGVRRI APVQSSMPSS VISSQSMHLG VLATASHAVA TQTLFVVYYK PRASQFIVSV NKYLEAINQK CNVGMRFKTR FEGDESPENY KRFSGTIVGV EDISPHWVNS NWRSLKVQWD EPASFPRPDR VLPWEIEPIL ASVPTTSSQT AAIKNKRPRQ ASELADLGDT PLAFPTFWDA GLTQSDMAKL SVMAEIKRSD SSSHMWHHNS KSSNNGISMN QTEASWLSSP SQLYHDTTDD SKSISAWPIS KPHSERLNND HFLDQVDKEI NKVEAATSYR LFGIDLIDHA RNNSLSAENA SGITSECKID VNHVSDISKA SKEWNQEQLQ LSPKETQSKQ VCSRSCTKVQ MQGVAVGRAV DLTTLDGYDQ LVDELEKMFD IKGQLQLRNK WEIVFTDDEG DMMLVGDDPW LEFCKMVRRI FIYSSQDVHK LSSGSKLPIS SMEEIVTSLD TTET // ID I1NCS4_SOYBN Unreviewed; 413 AA. AC I1NCS4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG97268.1, ECO:0000313|EnsemblPlants:GLYMA19G45090.1}; GN Name=LOC100812161 {ECO:0000313|EnsemblPlants:GLYMA19G45090.1}; GN ORFNames=GLYMA_19G261300 {ECO:0000313|EMBL:KRG97268.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA19G45090.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA19G45090.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G45090.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG97268.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG97268.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA19G45090.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G45090.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG97268.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG97268.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000852; KRG97268.1; -; Genomic_DNA. DR EMBL; CM000852; KRG97269.1; -; Genomic_DNA. DR EMBL; CM000852; KRG97270.1; -; Genomic_DNA. DR EMBL; CM000852; KRG97271.1; -; Genomic_DNA. DR EMBL; CM000852; KRG97272.1; -; Genomic_DNA. DR RefSeq; XP_003553806.1; XM_003553758.3. DR RefSeq; XP_006604926.1; XM_006604863.2. DR RefSeq; XP_014627637.1; XM_014772151.1. DR RefSeq; XP_014627638.1; XM_014772152.1. DR RefSeq; XP_014627639.1; XM_014772153.1. DR EnsemblPlants; GLYMA19G45090.1; GLYMA19G45090.1; GLYMA19G45090. DR EnsemblPlants; GLYMA19G45090.2; GLYMA19G45090.2; GLYMA19G45090. DR GeneID; 100812161; -. DR Gramene; GLYMA19G45090.1; GLYMA19G45090.1; GLYMA19G45090. DR Gramene; GLYMA19G45090.2; GLYMA19G45090.2; GLYMA19G45090. DR KEGG; gmx:100812161; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; VHHAHEI; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008827; Chromosome 19. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 90 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 90 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 45903 MW; 22FD2B44D3CF4D91 CRC64; MELMQQVKGN YSDSREEEEA AAEIITITRE PESSRLHQQD AASNFGKKLD LMDLSLGSSK EEEEGKLQQG GGGGGVVHHA HEIVEKENMF EKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS SSNEKGLLLN FEDRNGKVWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGLG DLYRHRLYID WRKRSAHPHA HHHAPDPLFL PSIRWYSLPP TMPPRYHHDH HFHHHLNYNN LFTFQQHQYQ LGAATAAATA AHHGDQNSGS GSLYYLRSSM SMGGGDQNLQ GRGNNIVPMI IDSVPVSVGH HNNRHGNGGI TSGGATSSGK RLRLFGVNME CASSAEDSKG LSSGSAAHVT TAASSSLHQR LRLPLPHEDP LSSSSARFGD HKGGSTGTSL LFDLDPSLQY HRQ // ID I1ND23_SOYBN Unreviewed; 435 AA. AC I1ND23; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG89212.1, ECO:0000313|EnsemblPlants:GLYMA20G01130.1}; GN Name=LOC100789352 {ECO:0000313|EnsemblPlants:GLYMA20G01130.1}; GN ORFNames=GLYMA_20G008700 {ECO:0000313|EMBL:KRG89212.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G01130.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G01130.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G01130.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG89212.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89212.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA20G01130.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G01130.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG89212.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89212.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000853; KRG89212.1; -; Genomic_DNA. DR RefSeq; XP_003555681.1; XM_003555633.2. DR UniGene; Gma.57974; -. DR STRING; 3847.GLYMA20G01130.1; -. DR EnsemblPlants; GLYMA20G01130.1; GLYMA20G01130.1; GLYMA20G01130. DR GeneID; 100789352; -. DR Gramene; GLYMA20G01130.1; GLYMA20G01130.1; GLYMA20G01130. DR KEGG; gmx:100789352; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; I1ND23; -. DR OMA; DGRSKFS; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 435 AA; 49453 MW; E7A14F79AE7A1AA7 CRC64; MPRPCFHKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWRI GLKKADNRIL FVDGWQDFVQ HYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAIRN RNEGSCLANY HHIFDEMEDV DSLDLSDLSP QYLTPGSLQN KGCVGSVDQL TPGKSHTPAL QNLFNGGSKL NRINWGDGGS AFSSKNANSQ GNQSTRDIGV QFNANEFKRS TEELKLRYSN EETVNKTAKK KRKSEPYGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKT FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTVENNLGEG DVCVFELLRT KEVVLQVTVF RVTEDAGLLN QPPMMQQQHI PNMSHTKLLN PHLQHRVSTT KLIRN // ID I1NHG1_SOYBN Unreviewed; 593 AA. AC I1NHG1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100818234 {ECO:0000313|EnsemblPlants:GLYMA20G32040.1}; GN ORFNames=GLYMA_20G180000 {ECO:0000313|EMBL:KRG91907.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G32040.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G32040.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G32040.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG91907.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG91907.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA20G32040.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G32040.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG91907.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG91907.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000853; KRG91907.1; -; Genomic_DNA. DR RefSeq; XP_003555436.2; XM_003555388.3. DR EnsemblPlants; GLYMA20G32040.1; GLYMA20G32040.1; GLYMA20G32040. DR GeneID; 100818234; -. DR Gramene; GLYMA20G32040.1; GLYMA20G32040.1; GLYMA20G32040. DR KEGG; gmx:100818234; -. DR InParanoid; I1NHG1; -. DR OMA; NSICTIE; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 593 AA; 65247 MW; E005E482067A516F CRC64; MFMVMDSAER CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKRV DFPKNQTRVP PLIPCRLSAM KYMADPDTDE VYVKMRLTPL REHELLDSQD DCFLGNSAGG GGVDQGQEKP PTSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDML GQCWKFRHIY RGTPRRHLLT TGWSNFVNQK RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGTEFSSGGW NNPLFGGGFL CGSESNLMSG GDHEMLVGRV AAESVVEAVT CAVNGRPFEV VYYPRASSPE FCVKASVVKA AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI LWPDSPWRLL QVVWDEPDLL QNVKCVNPWL VELVSNMPTF NLSAYSPPRK KQRFLQDPYF QVINQLPMPS FSSNLLNYTN SICTIEDNNS SGGIQGARHP QFGLSPSDFP FNKLPADMLL GGFSRLDHAA AQPIMPHCGT FKNNTTTKAN VDISCLLTVG NPGQNFKESN ETKAPHILLF GKLIHTEQKS SNTTSSASTN GNSVSEGNSL KTSNASDGGS PWYKEQHKSD LGNDNVNTLC IAL // ID I1NHL5_SOYBN Unreviewed; 362 AA. AC I1NHL5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 2. DT 07-JUN-2017, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG92025.1, ECO:0000313|EnsemblPlants:GLYMA20G32730.1}; GN Name=LOC100789009 {ECO:0000313|EnsemblPlants:GLYMA20G32730.1}; GN ORFNames=GLYMA_20G186200 {ECO:0000313|EMBL:KRG92025.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G32730.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G32730.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G32730.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG92025.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG92025.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA20G32730.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G32730.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG92025.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG92025.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000853; KRG92025.1; -; Genomic_DNA. DR RefSeq; XP_003556265.1; XM_003556217.3. DR STRING; 3847.GLYMA20G32730.1; -. DR EnsemblPlants; GLYMA20G32730.1; GLYMA20G32730.1; GLYMA20G32730. DR GeneID; 100789009; -. DR Gramene; GLYMA20G32730.1; GLYMA20G32730.1; GLYMA20G32730. DR KEGG; gmx:100789009; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; I1NHL5; -. DR KO; K09287; -. DR OMA; KHTYLDE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 178 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 178 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 362 AA; 39344 MW; F345C5641362A855 CRC64; MDGGSVTDET TTTSNSLSVP ANLSPPPLSL VGSGATAVVY PDGCCVSGEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARAYDIA AHRFRGRDAV TNFKPLAGAD DAEAEFLSTH SKSEIVDMLR KHTYDNELQQ STRGGRRRRD AETASSGAFD AKAREQLFEK TVTQSDVGKL NRLVIPKQHA EKHFPLSGSG GGALPCMAAA AGAKGMLLNF EDVGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD AVQFFKSTGL DRQLYIDCKA RSGKVNNNAA GLFIPVGPVV EPVQMVRLFG VDLLKLPVPG SDGIGVGCDG KRKEMELFAF ECSKKLKVIG AL // ID I1NK34_ORYGL Unreviewed; 326 AA. AC I1NK34; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0022400.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0022400.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0022400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0022400.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0022400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA01G0022400.1; -. DR EnsemblPlants; ORGLA01G0022400.1; ORGLA01G0022400.1; ORGLA01G0022400. DR Gramene; ORGLA01G0022400.1; ORGLA01G0022400.1; ORGLA01G0022400. DR eggNOG; ENOG410JSZ2; Eukaryota. DR eggNOG; ENOG41108C9; LUCA. DR OMA; MERNKAT; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 25 46 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 326 AA; 36268 MW; 025829269D80AF1A CRC64; MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEEEEELA AMEEDELIHV VQAAELRLPS STTATRPSSR YKGVVPQPNG RWGAQIYERH ARVWLGTFPD EEAAARAYDV AALRFRGRDA VTNRAPAAEG ASAGELAFLA AHSKAEVVDM LRKHTYDDEL QQGLRRGSRA QPTPRWAREP LFEKAVTPSD VGKLNRLVVP KQQAERHFPF PLRRHSSDAA GKGVLLNFED GDGKVWRFRY SYWNSSQSYV LTKGWSRFVR EKGLRPGDTV AFSRSAAAWG TEKHLLIDCK KMERNNLATV DAIAVDDDAR VVVKLFGVDI AGDNTR // ID I1NK36_ORYGL Unreviewed; 372 AA. AC I1NK36; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0022600.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0022600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0022600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0022600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0022600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA01G0022600.1; ORGLA01G0022600.1; ORGLA01G0022600. DR Gramene; ORGLA01G0022600.1; ORGLA01G0022600.1; ORGLA01G0022600. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 128 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 187 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 128 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 187 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 39879 MW; DBA8319224D762DE CRC64; MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVMKGVDSA DEVVTSKPAA AAAAAAVAQQ SSRYKGVVPQ PNGRWGAQIY ERHARVWLGT FPDEEAAARA YDVAALRYRG RDAATNFPGA AASAAELAFL AAHSKAEIVD MLRKHTYADE LRQGLRRGRG MGARAQPTPS WAREPLFEKA VTPSDVGKLN RLVVPKQHAE KHFPLRHAAS SDSASAATGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SRSAYGPDKL LFIDCKKNNA AVAATTTCAG DERPTTTTSG AEPRVVRLFG VDIAGGDCRK RERAVEMGQE AFLLKRQCVV HQRTPVLGAL LL // ID I1NLN7_ORYGL Unreviewed; 699 AA. AC I1NLN7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0077700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0077700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0077700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0077700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA01G0077700.1; -. DR EnsemblPlants; ORGLA01G0077700.1; ORGLA01G0077700.1; ORGLA01G0077700. DR Gramene; ORGLA01G0077700.1; ORGLA01G0077700.1; ORGLA01G0077700. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77546 MW; 05544542DB2E0D14 CRC64; MSSQGAGGGV GDPELFAELW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ ENLPTLPDPP LPEQPRPVVH SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG QPRRHLLTTG WSTFVTSKKL ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PASVISSQSM HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RFKMSFEGED VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE KTGIGSSEPN CISGHQVVWP GEHPGYGAVS SSVCQNPLVL ESWLKDFNSS NKGVSPTLSE ISQKIFQVTS NEARIATWPA RSAYQAEEPT SKLSSNTAAC GYRTEEVAPN ASKVVEGKKE PAMFRLFGVD LMKCTSISTT TDDKSSVGAG EASAKGTGSH EDSGQLSAFS KVTKEHIAAD ESPREIQSHQ NYTARTRIKV QMHGNAVGRA VDLANLDGYE QLMNELEEMF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE FCQMVRKIVL YPIEDEKKIE PHLKLLSSAN PEQDQKTGF // ID I1NQJ0_ORYGL Unreviewed; 722 AA. AC I1NQJ0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0213000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0213000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0213000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0213000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA01G0213000.1; -. DR EnsemblPlants; ORGLA01G0213000.1; ORGLA01G0213000.1; ORGLA01G0213000. DR Gramene; ORGLA01G0213000.1; ORGLA01G0213000.1; ORGLA01G0213000. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR OMA; READPMW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 722 AA; 79055 MW; D00CDF2A63DF4D9F CRC64; MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY LPQGHLEHLG AAPGSGPGAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM REGEDGAACD GEGEDAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL QRPSQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE LRLGVRRAAQ LKNASPFPAL HNQISNTSSL SEVAHAVAVK SIFHIYYNPS CTHRLSQSEF IIPYWKFMRS FSQPFSVGMR FKLRYESEDA SERRRTGIII GSREADPMWH GSKWKCLVVK WDDDVECRRP NGVSPWEIEL SGSVSGSHLS TPHSKRLKSC FPQVNPDIVL PNGSVSSDFA ESARFHKVLQ GQELLGLKTR DGTVNTASQA TEARNFQYTD ERSCSINMSN NILGVPRLGV KTPSGNPGFS YHCSGFGESQ RFQEVLQGQE VFRPYRGGTL SDACIRGSGF RQPDGNHAPG AAFKWLAPQG CDHHGITTSV LPQASSPSSV LMFPQTSSKM PGLEYIYGCL DRNENSRHFK IGPTQDMTRT DQTLRLWPHL ISGKMLDECT RNEKLHSPVG GAEHESNNKC LNTNGCKIFG ISLTEKAQAG DEVDCGNASY HSRLQSLKPQ MPKSLGSSCA TVHEQRPVVG RVVDISAVNT MI // ID I1NQW3_ORYGL Unreviewed; 395 AA. AC I1NQW3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0225300.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0225300.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0225300.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0225300.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0225300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA01G0225300.1; ORGLA01G0225300.1; ORGLA01G0225300. DR Gramene; ORGLA01G0225300.1; ORGLA01G0225300.1; ORGLA01G0225300. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 136 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 216 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 136 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 216 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 395 AA; 41349 MW; B5BF9779D9992A41 CRC64; MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG RVCGGGGGGA GGAGGKLPSS KFKGVVPQPN GRWGAQIYER HQRVWLGTFA GEDDAARAYD VAAQRFRGRD AVTNFRPLAE ADPDAAAELR FLATRSKTEV VDMLRKHTYF DELAQSKRAF AASTPSAATT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTAPAPA PVEQMAGCKR ARDLAATTPP QAAAFKKQCI ELALV // ID I1NR88_ORYGL Unreviewed; 289 AA. AC I1NR88; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0237800.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0237800.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0237800.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0237800.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0237800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; I1NR88; -. DR STRING; 4538.ORGLA01G0237800.1; -. DR EnsemblPlants; ORGLA01G0237800.1; ORGLA01G0237800.1; ORGLA01G0237800. DR Gramene; ORGLA01G0237800.1; ORGLA01G0237800.1; ORGLA01G0237800. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR OMA; SMDMANP; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 31858 MW; 2813DD52530B6C38 CRC64; MAGVTSKRRS SSASTSSSSG DGAAVSDRPR GVTRKRRSGG RCPRPAASLR PAAPRPSSHH TAGLRVILQK ELRYSDVSQL GRIVLPKKEA EAYLPILTSK DGKKSLCMHD LQNAQLWTFK YRYWPNNKSR MYVLENTGDY VRTHDLQLGD SIVIYKDDEN NRFVIGAKKA GDQQAATVPQ VDEHISTLFP IFPIAQVDDY LSPMAPQVDI SAFVPHADEN HEIFDGILNS LPEIPVANVR YSDFFDPFDD GMDMANTLNA NANQSASLHV TDDKSGHSLI PNPKSGPHM // ID I1NRC4_ORYGL Unreviewed; 405 AA. AC I1NRC4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0241400.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0241400.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0241400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0241400.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0241400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA01G0241400.1; ORGLA01G0241400.1; ORGLA01G0241400. DR Gramene; ORGLA01G0241400.1; ORGLA01G0241400.1; ORGLA01G0241400. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 405 AA; 44954 MW; 7E01B6648F80E649 CRC64; MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR TACEREDLMG GGGGGGGDRP RKKRGRPRTA AASRDAARPK KDSVGKEMVT YRASPSGGQP LQIVDSSWTP EPGSTAVKNE EDADELPVCE LPASSASPPR HVPEGALDAD GGAARRGAAK TRSLQDDLAL ASIPPSIRRY KGYVSRRRAV ATAERQRATE IAHAFRSPLP YCVIRMSTMH VYYSFMMRFP TGFSRQHLPR ERTDVVLRDP GGKVWSVLYI PNTRDRLSRG WCAFARGNCL EEGDYCVFEL VAAAEFRVHI FRVVEPAVPA VRLRRVTVTC GRGPT // ID I1NRC6_ORYGL Unreviewed; 719 AA. AC I1NRC6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0241600.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0241600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0241600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0241600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0241600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA01G0241600.1; ORGLA01G0241600.1; ORGLA01G0241600. DR Gramene; ORGLA01G0241600.1; ORGLA01G0241600.1; ORGLA01G0241600. DR eggNOG; ENOG410JVSD; Eukaryota. DR eggNOG; ENOG41105MW; LUCA. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 611 652 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 719 AA; 82592 MW; B8771386948644EE CRC64; MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYCSS PILESRKCSL EEPKLSNQPL QCDLTTKKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER SEERQPSPAS MIYQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETTY TSLELDYKKA TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH // ID I1NUF1_ORYGL Unreviewed; 667 AA. AC I1NUF1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0349100.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0349100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0349100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0349100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0349100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA01G0349100.1; -. DR EnsemblPlants; ORGLA01G0349100.1; ORGLA01G0349100.1; ORGLA01G0349100. DR Gramene; ORGLA01G0349100.1; ORGLA01G0349100.1; ORGLA01G0349100. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 570 665 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 570 665 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 74698 MW; 629E19B7E92B3B30 CRC64; MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKPR TDEQRYDLDP RQHDMPVRVC IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR TPGDCFGMPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IDAAPDDCKK DKDVLHSECN KVAQKAHSSV KQDITKDGPR QIAAEIMSSG PKTCELTYVR KNSVQPGYFT SVGQYAGNNS KGQESGGTKS CVVLAVAANS KKFCITIPPP DQTWLELPRR LPVLPRTKKQ ARKILILKDP SMRLWPVLYQ CTPKFNGFIA GWADISRENN LREGDTCEFE LCSNSELSFQ VLVPNLQ // ID I1NUJ4_ORYGL Unreviewed; 729 AA. AC I1NUJ4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0353400.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0353400.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0353400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0353400.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0353400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA01G0353400.1; -. DR EnsemblPlants; ORGLA01G0353400.1; ORGLA01G0353400.1; ORGLA01G0353400. DR Gramene; ORGLA01G0353400.1; ORGLA01G0353400.1; ORGLA01G0353400. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 538 640 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 538 640 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 729 AA; 76000 MW; 6CE49464EC1E7A07 CRC64; MDASAGSSAP HSHGNPGKQG GGGGGGGGGR GKAPAAEIRG EAARDDVFFA DDTFPLLPDF PCLSSPSSST FSSSSSSNSS SAFTTAAGGG CGGEPSEPAS AADGFGELAD IDQLLDLASL SVPWEAEQPL FPDDVGMMIE DAMSGQPHQA DDCTGDGDTK AVMEAAGGGD DAGDACMEGS DAPDDLPAFF MEWLTSNREY ISADDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW VQNHHLQKKR PRTAIDDGAA SSDPQLPSPG ANPGYEFPSG GQEMGSAAAT SWMPYQAFTP PAAYGGDAMY PGAAGPFPFQ QSCSKSSVVV SSQPFSPPNA AAAGDMHASG GGNMAWPQQF APFPVSSTSS YTMPSVVPPP FTAGFPGQYS GGHAMCSPRL AGVEPSSTKE ARKKRMARQR RLSCLQQQRS QQLNLSQIHI SGHPQEPSPR AAHSAPVTPS SAGCRSWGIW PPAAQIIQNP LSNKPNPPPA TSKQPKPSPE KPKPKPQAAA TAGAESLQRS TASEKRQAKT DKNLRFLLQK VLKQSDVGSL GRIVLPKKEA EVHLPELKTR DGVSIPMEDI GTSQVWNMRY RFWPNNKSRM YLLENTGDFV RSNELQEGDF IVIYSDIKSG KYLIRGVKVR RAAQEQGNSS GAVGKHKHGS PEKPGVSSNT KAAGAEDGTG GDDSAEAAAA AAAGKADGGG CKGKSPHGVR RSRQEAAAAA SMSQMAVSI // ID I1NUU1_ORYGL Unreviewed; 810 AA. AC I1NUU1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA01G0363100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA01G0363100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA01G0363100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA01G0363100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA01G0363100.1; ORGLA01G0363100.1; ORGLA01G0363100. DR Gramene; ORGLA01G0363100.1; ORGLA01G0363100.1; ORGLA01G0363100. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 694 787 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 810 AA; 90985 MW; 2ACE4BFA13C1D97B CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVGVEASM NQVADSQMRL YDLPSKLLCR VLNVELKAEQ DTDEVYAQVM LMPEPEQNEM AVEKTTPTSG PVQARPPVRS FCKTLTASDT STHGGFSVLR RHADECLPPL DMTQSPPTQE LVAKDLHSMD WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQLSNVP SSVISSQSMH LGVLATAWHA INTKSMFTVY YKPRTSPSEF IIPYDQYMES VKNNYSVGMR FRMRFEGEEA PEQRFTGTII GSENLDPVWP ESSWRSLKVR WDEPSTIPRP DRVSPWKIEP ASSPPVNPLP LSRVKRPRPN APPASPESPI LTKEAATKVD TDPSQAQRSQ NSTVLQGQEQ MTLRSNLTES NDSDVTAHKP MMWSPSPNAA KAHPLTFQQR PPMDNWMQLG RRETDFKDVR SGSQSFGDSP GFFMQNFDEA PNRLTSFKNQ FQDQGSARHF SDPYYYVSPQ PSLTVESSTQ MHTDSKELHF WNGQSSVYGN SRDQPQNFRF EQNSSSWLNQ SFARPEQPRV IRPHASIAPV ELEKTEGSGF KIFGFKVDTT NAPNNHLSSP MAATHEPMLQ TPSSLNQLQP VQTDCIPEVS VSTAGTATEN EKSGQQAQQS SKDVQSKTQV ASTRSCTKVH KQGVALGRSV DLSKFSNYDE LKAELDKMFE FDGELVSSNK NWQIVYTDNE GDMMLVGDDP WEEFCSIVRK IYIYTKEEVQ KMNSKSNAPR KDDSSENEKG HLPMPNKSDN // ID I1NX63_ORYGL Unreviewed; 1141 AA. AC I1NX63; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0031900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0031900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0031900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0031900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA02G0031900.1; -. DR EnsemblPlants; ORGLA02G0031900.1; ORGLA02G0031900.1; ORGLA02G0031900. DR Gramene; ORGLA02G0031900.1; ORGLA02G0031900.1; ORGLA02G0031900. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1008 1092 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 594 624 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1141 AA; 126678 MW; C11EBB6A200FC83F CRC64; MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK DVDAHVPSYP NLPSKLICLL HGVNLHADPD TDEVYAQMTL QPVNTYGKEA LQLSELALKQ ARPQMEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDIHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVIVVRDEKH QLLLGIRRAN RQPTNISSSV LSSDSMHIGV LAAAAHAAAN SSPFTIFYNP RASPTEFVIP FAKYQKALYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESAAGERRN RVSIWEIEPV AAPFFLCPQP FFGVKRPRQL DDESDMENLF KRAMPWLGEE VCIKDTQNQN STAPGLSLVQ WMNMNRQQSS SLANTAAQSE YLQALGNPAM QNLAADELAR QLYVQNNLLQ QNCIQFNSPK LPQQMQTMND LSKAAIPLNQ LGAIINPQDQ KQDAVNHQRQ QNSIQVIPLS QAQSNLVQAQ VIVQNQMQQQ KPSPTQNPQR INGQRLLLSH QQQDQNLQLQ QQLLLQQKQQ LQQQQQQQQN QQQLNKSLGQ LVNLASQQSK LFDEELQLQI LQKLQQQSLM SQSTSTLSQP PLIQEQQKLI TDMQKQLSNS HSLAQQQMMP QQEIKPSLQA TPLLPTVQQE QQQKLLQKQV SLADVSGVAF QPISSTNVIP KTGGAMIISG ATQSVVTEEM PSCSTSPSTA NGNHFTQSTK NRHCINTERL PPSTAPMLIP TSIDAVTATP LMTKELPKPN NNVKQSVVNS KLPNVAPGPQ NCINNALQTD NLETSSSATS LCPSRTDGLV HQGFPSSNFN QHQMFKDALP DVEMEGVDPS NSGLFGINND NLLGFPIETE DLLINALDSV KYQNHISTDV ENNYPMQKDA LQEISTSMVS QSFGQSDMAF NSIDSAINDG AFLNKNSWPA APPLQRMRTF TKVYKRGAVG RSIDIGRYSG YEELKHALAR MFGIEGQLED RQRIGWKLVY KDHEDDILLL GDDPWEEFVN CVRCIRILSP QEVQQMSLDG DLGSNVLPNQ ACSSSDGVNG WRPRCDQNPR NPSIGPYDQF E // ID I1NXK2_ORYGL Unreviewed; 908 AA. AC I1NXK2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0045800.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0045800.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0045800.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0045800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA02G0045800.1; -. DR EnsemblPlants; ORGLA02G0045800.1; ORGLA02G0045800.1; ORGLA02G0045800. DR Gramene; ORGLA02G0045800.1; ORGLA02G0045800.1; ORGLA02G0045800. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 777 861 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100777 MW; 13F85FD23625362C CRC64; MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWTNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLMWLRDSQ NTGFQSLNFG GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AALQNTTKQV SPAMLQFQQP QNIVGRSSLL SSQILQQAQP QFQQMYHQNI NGNSIQGHSQ PEYLQQPLQH CQSFNEQKPQ LQPQQQQQES HQQQPQHQQM QQQKHLSNFQ TVPNALSVFS QLSSTPQSTP STLQTVSPFS QQHNFPDTNI SCLSPSNVSS MHDTLRSFPS EAASDLPGVP RITPVPVSDP WSSKRVAVES TITSRPHDIS SQIENFDLTP SSIPQNSTLA PLPGRECLVD QDGSSDPQNH FLFGVNIDSQ SLLMQDGIPS LHNENSSSTI PYSTSNFLSP SQDDYPLSQT LTTPGCLDES GYVPCSDNAD QVKRPPATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR QESRSLSTGI ASVGSVEF // ID I1NY93_ORYGL Unreviewed; 111 AA. AC I1NY93; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0069900.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0069900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0069900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0069900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0069900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA02G0069900.1; ORGLA02G0069900.1; ORGLA02G0069900. DR Gramene; ORGLA02G0069900.1; ORGLA02G0069900.1; ORGLA02G0069900. DR OMA; MSAMLNE; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 111 AA; 12146 MW; 32C1A88A9091EAC9 CRC64; MAAAAAEQNV PVEFQEAHGY AAREKVVLRM LGRSWTVRLK HTKGRRPRRE RAVLRYGWHR FCADNGLAVG DTCFFRALRS AGSGAGDVDD GDGDHVLSVT VHKADGGDPL E // ID I1P043_ORYGL Unreviewed; 267 AA. AC I1P043; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0134900.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0134900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0134900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0134900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0134900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA02G0134900.1; ORGLA02G0134900.1; ORGLA02G0134900. DR Gramene; ORGLA02G0134900.1; ORGLA02G0134900.1; ORGLA02G0134900. DR OMA; KRRTMKH; -. DR OrthoDB; EOG09360IMJ; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29360 MW; 6FA3854190B74F3E CRC64; MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC GHLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARHVPSL GQARLHDGNQ DGSGAPSRHV PSSGRRVEAQ LSRVSSRRQR CTMKHSIPEP TIETPPILES MFLIAAPPAV KCLRLFGVNI YVLPVSSSGQ PKQESSP // ID I1P044_ORYGL Unreviewed; 272 AA. AC I1P044; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0135000.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0135000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0135000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0135000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0135000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA02G0135000.1; ORGLA02G0135000.1; ORGLA02G0135000. DR Gramene; ORGLA02G0135000.1; ORGLA02G0135000.1; ORGLA02G0135000. DR OMA; PFSGHAT; -. DR OrthoDB; EOG09360KAP; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 29836 MW; 36AD7D056D2019A3 CRC64; MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KALMPSDVSW DTEQLVIPDE HVGKLLDMVV MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS TACGRFFICC RRTCMSFLSL PTTSHRIHGS SVLPQPRAAQ AAHHPFSGHA TLCLGNKASD HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP // ID I1P1B1_ORYGL Unreviewed; 662 AA. AC I1P1B1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0176700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0176700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0176700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0176700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA02G0176700.1; -. DR EnsemblPlants; ORGLA02G0176700.1; ORGLA02G0176700.1; ORGLA02G0176700. DR Gramene; ORGLA02G0176700.1; ORGLA02G0176700.1; ORGLA02G0176700. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR OMA; EIPERRF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 532 625 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 662 AA; 73604 MW; 238234E64DA173BA CRC64; GSSCDALYRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPSK ILCKVVNVEL RAETDSDEVY AQIMLQPEAD QNELTSPKPE PHEPEKCNVH SFCKTLTASD TSTHGGFSVL RRHAEECLPP LDMTQNPPWQ ELVARDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSQSE FVVSANKYLE AKNSKISVGM RFKMRFEGDE APERRFSGTI IGVGSMSTSP WANSDWRSLK VQWDEPSVVP RPDRVSPWEL EPLAVSNSQP SPQPPARNKR ARPPASNSIA PELPPVFGLW KSSAESTQGF SFSGLQRTQE LYPSSPNPIF STSLNVGFST KNEPSALSNK HFYWPMRETR ADSYSASISK VPSEKKQEPS SAGCRLFGIE ISSAVEATSP LAAVSGVGQD QPAASVDAES DQLSQPSHAN KSDAPAASSE PSPHETQSRQ VRSCTKVIMQ GMAVGRAVDL TRLHGYDDLR CKLEEMFDIQ GELSASLKKW KVVYTDDEDD MMLVGDDPWP EFCSMVKRIY IYTYEEAKQL TPKSKLPIIG DAIKPNRNKQ SPESDMPHSD LDSTAPVTDK DC // ID I1P1V3_ORYGL Unreviewed; 1053 AA. AC I1P1V3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0195900.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0195900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0195900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0195900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0195900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA02G0195900.1; -. DR EnsemblPlants; ORGLA02G0195900.1; ORGLA02G0195900.1; ORGLA02G0195900. DR Gramene; ORGLA02G0195900.1; ORGLA02G0195900.1; ORGLA02G0195900. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 380 473 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 991 1053 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 380 473 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 991 1053 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1053 AA; 119146 MW; 22C63FC8FC09CDC7 CRC64; MDDAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK KYSHHDMKKN LRNDANEEKR KSSDDMRDGD FEEKKKCSRH DMKKNLRNDA NGERRKSSDD MRDGDDEEKK CSRQDMKKNL RNDADEEKRK SSDDMRDGDD EEKKKRSRHD MKKNSRNDAD EEKRKRKRKR KRKCSDDLKK SVLNDASKEA TSHSDWRKNR KAGSDAEQRG KKLLNGDKKA KSRKVTTPFF EKMRKIKMQR TSNQNGEKNM KSDGDSYKKT VPLSVNKGKM EKDGTNKRTL SNTLVAKERK MRPSDSMEMK MKKKKRDASF VQPDERTAQT FSTKNKEKKR KAPSTPLKRE QKERVASSDN KKETKKACIV AIGNEKKNCR DGKKKKRKAA FAFFKFVRDE FEELLFIPPA VAPSLKDLID RHVYLEDSEG KCSKIRLSVV DGSLAFYEGW NSFVSEHCIK WGEFLLFEYT PESTFSVRVF GIDSCERLHF SVKSGGKGAV KKRKERHTLS DDLISHYNGQ YQDSEDIHDD PNVSGESPRS KEPKIAVDAE IGTRNLVAKS INAASETQDS ERVESGIGYG SLGALGNKVR NLSNGECDTR SDSVFCIQEK TRRSEVIIIS DEAYSTQVDE DTMKQTAPSE ASEIHHVTIN TQKDLERVVD GVCCESSVAL NNKMGNLILG EPKNKNISPA CSTEKTNGSE ITPTTGAIPL TQENIDTVKL NTLSCFEEDR STTRESELAA AIPTISETHD SDKDLGQKHQ RNSVQVNSII AVDKYLNDSE MNISGNIFRI YEAPAGTRCL EKWKRGIVNG RAALDDIGQV RPEKTQKAGE KLVGNCGAMG ESPVDLRIES DVTDTCLKPI LNIPIEELSI LDSVSISKCG RSRTEVNHLF NQKGATVQLQ TKKEPLKPTG SSGNRKGDKI AVSVNRVFAH QSELQIPQQE NGNFTSCVTP VALLPAKAEL LDLDDHSLQF CIPSTIQKWL ELPKSLPITC RQKGRYDRNV VILKDPMRRL WPVFYHDKPV FVGFTAGWKP FAAANNLQAG DVCKFVKEMD EDELAFQVYI TRK // ID I1P2E5_ORYGL Unreviewed; 681 AA. AC I1P2E5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0215100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0215100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0215100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0215100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA02G0215100.1; -. DR EnsemblPlants; ORGLA02G0215100.1; ORGLA02G0215100.1; ORGLA02G0215100. DR Gramene; ORGLA02G0215100.1; ORGLA02G0215100.1; ORGLA02G0215100. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 675 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 73770 MW; 538210743FA04E89 CRC64; MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS AARVPALVPC RVASVRYMAD PDTDEVFARI RLVPLRAAED GDVEEDGAAA GEEHEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW DQYGGLMRGN ASPCAAAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRHPDHV GPTPIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS PAATGNSSLN WNTEKGASEG SGSGVIQNSP TDNTSSERLQ WFRENSTVSE LGLEPGQCKV FIESDTVGRN LDLSSLASFE QLYGRLSEMF CIDSAELRSR VLYRGATGEV RHAGDEPFSE FIKLARRLTI LTDAGSDNLG S // ID I1P355_ORYGL Unreviewed; 411 AA. AC I1P355; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0241100.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0241100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0241100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0241100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0241100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA02G0241100.1; -. DR EnsemblPlants; ORGLA02G0241100.1; ORGLA02G0241100.1; ORGLA02G0241100. DR Gramene; ORGLA02G0241100.1; ORGLA02G0241100.1; ORGLA02G0241100. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 199 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 199 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 43904 MW; D998A779F51FC2B5 CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY FPLDAAANEK GLLLNFEDRA GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF SRGIGDEAAR HRLFIDWKRR ADTRDPLRLP RGLPLPMPLT SHYAPWGIGG GGGFFVPPSP PATLYEHRLR QGLDFRAFNP AAAMGRQVLL FGSARIPPQA PLLTRAPSPL HHHYTLQPSG DGVRAAGSPV VLDSVPVIES PTTAAKRVRL FGVNLDNPHG GGGAAAAAGE SSNHGNALSL QTPAWMRRDP TLRLLELPPH HHHGAESSAA SSPSSSSSSK RDAHSALDLD L // ID I1P630_ORYGL Unreviewed; 212 AA. AC I1P630; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0343600.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA02G0343600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA02G0343600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA02G0343600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA02G0343600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA04G0074500.1; -. DR EnsemblPlants; ORGLA02G0343600.1; ORGLA02G0343600.1; ORGLA02G0343600. DR EnsemblPlants; ORGLA04G0074500.1; ORGLA04G0074500.1; ORGLA04G0074500. DR Gramene; ORGLA02G0343600.1; ORGLA02G0343600.1; ORGLA02G0343600. DR Gramene; ORGLA04G0074500.1; ORGLA04G0074500.1; ORGLA04G0074500. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR OMA; HERVEFR; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 22268 MW; E772EC1DF5E0CDAA CRC64; TKAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID // ID I1P6Z7_ORYGL Unreviewed; 308 AA. AC I1P6Z7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0014300.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0014300.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0014300.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0014300.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0014300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0014300.1; ORGLA03G0014300.1; ORGLA03G0014300. DR Gramene; ORGLA03G0014300.1; ORGLA03G0014300.1; ORGLA03G0014300. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 33559 MW; 0CCB87E438562C31 CRC64; MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA AGARFLLPPS STPIYDHHRR HAHAVGYDAY AAATSRQVLF YRPLPPQQQH HPAVVLESVP VRMTAGHAEP PSAPSKRVRL FGVNLDCANS EQDHAGVVGK TAPPPLPSPP SSSSSSSGKA RCSLNLDL // ID I1P8A4_ORYGL Unreviewed; 237 AA. AC I1P8A4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0060000.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0060000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0060000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0060000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0060000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; I1P8A4; -. DR EnsemblPlants; ORGLA03G0060000.1; ORGLA03G0060000.1; ORGLA03G0060000. DR Gramene; ORGLA03G0060000.1; ORGLA03G0060000.1; ORGLA03G0060000. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26569 MW; C72DB584F9E94066 CRC64; MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK // ID I1P8U2_ORYGL Unreviewed; 267 AA. AC I1P8U2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0078800.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0078800.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0078800.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0078800.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0078800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0078800.1; ORGLA03G0078800.1; ORGLA03G0078800. DR Gramene; ORGLA03G0078800.1; ORGLA03G0078800.1; ORGLA03G0078800. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR OMA; WNVEINR; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30475 MW; 80014DF07B412F79 CRC64; MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRRHH DAAESGSSSS SDSSDAAAAA AAEGVGDVAL SQFAVTLRQC NLEDKQAQYL NVPMEFQEAH EYARREKVVL RMRGEAWTVR LKHSRRERGQ RTAFRYGWHR FCVDNGLAVG DTCFFRVLRE GDLRRGGAAD DHVLKVAVRK ADGTTLE // ID I1PDI8_ORYGL Unreviewed; 536 AA. AC I1PDI8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0243400.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0243400.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0243400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0243400.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0243400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0243400.1; ORGLA03G0243400.1; ORGLA03G0243400. DR Gramene; ORGLA03G0243400.1; ORGLA03G0243400.1; ORGLA03G0243400. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR OMA; CDDTAES; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 435 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 435 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 536 AA; 61152 MW; 2CA7305FD078EF1F CRC64; MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD CEKVFSCAGI RNTCKSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRRK TANLASSSED SGEDSPSEHE SVESGDLETS QEPYVLSRRS YLSEFQKDKV DALIQEIQPE TTAFVAIMRK SNVQLPTPFL VISFCYAEVH FPHKSVTVTL QRPCKSKKWH PRFYKRKDAR MNILRGSWVE FVKDNRVQEQ DICVFVPTKD ARRNFTFTVH LLRVAAAYSR GGTGVDRAGS SLGRTDVKSA SEISIKEEPI DQEENVSSRN RNGVSDESEE DEDSEGPAHP PYIVPCKSRL SRLQKKIVEE KVRSIQSKFP VYVAIMKKSN VERSASRCQL ELGARFAAAV HLPDRRQTVV LQRRGERWAT VMQIRSGTRR LLISGWHRFV RDNRLRVGDI CLFEFKTHER WRLTMAVHAI FREQCC // ID I1PDJ0_ORYGL Unreviewed; 535 AA. AC I1PDJ0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0243600.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0243600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0243600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0243600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0243600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0243600.1; ORGLA03G0243600.1; ORGLA03G0243600. DR Gramene; ORGLA03G0243600.1; ORGLA03G0243600.1; ORGLA03G0243600. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR OMA; MAGGNTH; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 528 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 528 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 535 AA; 60533 MW; CA33B3DC1FA2C415 CRC64; MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD CEKVFSCAGT RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD NCLQEEDICL FVPTKGGRNF VFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI KEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKLTM EVHIISNLQR YPEVE // ID I1PDJ1_ORYGL Unreviewed; 204 AA. AC I1PDJ1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0243700.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0243700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0243700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0243700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0243700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0243700.1; ORGLA03G0243700.1; ORGLA03G0243700. DR Gramene; ORGLA03G0243700.1; ORGLA03G0243700.1; ORGLA03G0243700. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 204 AA; 23163 MW; DB41D23BD09A767B CRC64; MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTTDSMHS MIIPDRFVNH FGGKIPGTIK LESPNGILYV VEVTECMNKT VIQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG CERNMFPXKA TGMEFLMNLR RVRILKALLA LPTFYHGRAR VVYLHCKRRX SKRKYDPSNP KFPFMQQSXT RAILGXLVPL ASXN // ID I1PDJ3_ORYGL Unreviewed; 519 AA. AC I1PDJ3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0243900.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0243900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0243900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0243900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0243900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0243900.1; ORGLA03G0243900.1; ORGLA03G0243900. DR Gramene; ORGLA03G0243900.1; ORGLA03G0243900.1; ORGLA03G0243900. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR OMA; PHESQTI; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 416 516 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 416 516 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 519 AA; 59128 MW; F99F92EF287E5A80 CRC64; MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG CEKVFTWAGI KKTSSVQERN VAPVDISRST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL AETSSSGESG EEGTDSSTSE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS HKRFDLRDGR TWPKVTGARR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS // ID I1PDJ5_ORYGL Unreviewed; 563 AA. AC I1PDJ5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0244100.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0244100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0244100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0244100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0244100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0244100.1; ORGLA03G0244100.1; ORGLA03G0244100. DR Gramene; ORGLA03G0244100.1; ORGLA03G0244100.1; ORGLA03G0244100. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR OMA; FTGRKFR; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 459 560 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 459 560 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 563 AA; 63989 MW; 78D2E2D7D0445E2B CRC64; MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLDQ FGGKISRTVE LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIENSR FTVLILDSNG CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTAQSSGG ERFARSESGS DSQHSKTAKL AATCSSGGSG EEAKESSSSE HESSYDLVDP QIAPMPGYVL SRGTNLSEAH EEKLDMLVQE IRPEIPLYVT TMKHSNVNSH HASLVIAKHY ACAYFPRTSQ TITLKWHGKN RKWHPKFYIR KDQVGYILHG RWIDFVRHNH VKEGDICIFH LKNFNGRKFR ATVHLLRETI PHSFGALHIP KRFESRNGRM RLKMTDDRRV SSTECRRGTM EPSTTNVKKE ADNEQCNNGQ GKRQEPLNFD VSVGSSKPYL TADRVSLTEE QFRKVEENVH SIQSEGPIYV SIMNKSNVGT DGLYIITLGR QFATRYLPEG EQTLTLLTTG TGKAWQVKMR PRSGDARMFT LGWRDFVRDN RLQTEDICLF QLMKNSERGL AMTVHIIRHS ERS // ID I1PDK1_ORYGL Unreviewed; 1028 AA. AC I1PDK1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0244700.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0244700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0244700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0244700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0244700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0244700.1; ORGLA03G0244700.1; ORGLA03G0244700. DR Gramene; ORGLA03G0244700.1; ORGLA03G0244700.1; ORGLA03G0244700. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR OMA; DICREYA; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 338 429 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 449 542 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 823 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 933 1028 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 146 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 338 429 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 449 542 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 730 823 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 933 1028 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1028 AA; 117819 MW; 0EE7F6AC92CAA7B5 CRC64; TAPFPASPVR LHPCPLLFSH PHLLGSDYFA FSVKGRGAHL ESMRVENKRG NRSWGTDAKR THPNSIFNQL VRYGYIGTGF PDMNCSLTWS LTGGPSTLSL PSFFPSAHLL LLLALFFLCI QSNHRMSKSG CERCRGRGFW DTDDQDTYFF KVMIGGFRRQ MTIPYKFAEN FRDQIQGTIK LKARNGNTCS VLVEKCSNKL VLTKGWAEFA NSHDIKMGDF LVFRYTGNSQ FEVKIFDPSG CVKAASHNAV NIGQHAQNMQ GDPIEILSCS DEHLRAQSLT TERQNQPEKD VIDNCNKKMK TEHASSSEDD QETPTAEVHR MKVEEMVRAI HSNHPVFVAV MKKSNVTRQP CYVAISRKYA NEYFPGGDQM LTLQRHGKRW QVKFCISKRK LRMLSKGWRK FTRDNELQVG APLALFITLF FSPHFRKMKK CGQKMRKLNT RSTARDDQEK YFFKVMIGDF HKRMTIPDKF ARHFKGVISK TIKLEPRSGY TFDVQVTKKL NILVLGSGWE SFVNAHDLNM GDFLVFKYNG DFLLQVLIFD PSGCEKSTSC SMENAIDHVG QGWKEHNDIS TSYHDQPKGN KHWMQKDSSS KGNKIGNTRS SNTPSKFSGC ILPRGTCLPV VQEKKMKEKI QAIHSKTPMY GNVMTKCNVS GSPCVLEITQ LYDDAYLPFN NGQELMLRHR DKSWKVRFYR FKNKSRKLTQ ASSLYKMRRP GARCREGHAH FNGNHIDGQY KNFFKVMIGR FRERMIIPNE FLQYFRGKIP RTIKLQLRDG CTYDVQVTKN LGKISLQSGW KAFVTAHDLQ MGDFLVFSYD GISKLKVLIF GPSGCEKVHS RPTLKNATHC GEKWEEPLHI SSNSHDLPVK SPQNVSKSEK QWDSSEQEND TANIEEVALQ GDDLQGHPVL NCILPKHTRL TDMQKQQLES KVGAIHSEIP IYGCILRKSR VHGKSQTVDI CREYADVYLP FKELNMTLQR HGKNWEVLCR TKDTRTKRLS TGWSRFAQEN NLQVGDICLF ELLKKKEYSM NVHIIPKK // ID I1PDK3_ORYGL Unreviewed; 306 AA. AC I1PDK3; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0244900.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0244900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0244900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0244900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0244900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA03G0244900.1; -. DR EnsemblPlants; ORGLA03G0244900.1; ORGLA03G0244900.1; ORGLA03G0244900. DR Gramene; ORGLA03G0244900.1; ORGLA03G0244900.1; ORGLA03G0244900. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR OMA; PVDMSGR; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 41 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34834 MW; 2CC4CA6784BDFC24 CRC64; MVKILKTTLR ATTMLKVLVK IRLSLFLIFS VLXLMLIMYM ASHKTIPNEF LHNFGGKIPK SIKLETRSGL TFDVQVTKNS GRVVLQSGWA SYVSAHDLKI GDFLVFKYSG DSQLKTLIFD SSGCEKVCEK PVDMSGRSYD IAMRNSQDEK KKRKQRDISR QGTVKPSEEG LKAELVPGCI LPSRTDLTRL QKNILTEKVK AINSETPIYG YVMNNSSIHG IPCTVEISKK YADVYLPFED GTVVLQHHGK SWNVRCCLTK QNSKRFLKGW RQFAGDNKLH LGDICLFDLL KDKKKYVMDV HIIRRK // ID I1PDK4_ORYGL Unreviewed; 376 AA. AC I1PDK4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0245000.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0245000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0245000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0245000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0245000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0245000.1; ORGLA03G0245000.1; ORGLA03G0245000. DR Gramene; ORGLA03G0245000.1; ORGLA03G0245000.1; ORGLA03G0245000. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR OMA; HKNSSRC; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 376 AA; 42316 MW; D47445AA5C2721D0 CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS ACKRGLFSDE IEQDHREEKK EGDDEDEDED KDGEDRYYFC RHGGRVTEYN LSKGDKEEIS RVPVPVEPGN PVLVKVIHAS HLLSSRYSTV GVSPEFAGRY LGPAMAREVV MERGGGGGRG DQWHVRFVRR ESSRGFHGTG WRRFARDNGL LAHDVCLFEL RLVDGAGAGD RLRRRPRPTM AVHVLRRVRG RFVLIR // ID I1PDK5_ORYGL Unreviewed; 380 AA. AC I1PDK5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0245100.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0245100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0245100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0245100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0245100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0245100.1; ORGLA03G0245100.1; ORGLA03G0245100. DR Gramene; ORGLA03G0245100.1; ORGLA03G0245100.1; ORGLA03G0245100. DR eggNOG; ENOG410JU89; Eukaryota. DR eggNOG; ENOG4110744; LUCA. DR OMA; MHASHVR; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 380 AA; 42477 MW; 2FF9B35A1F390ED4 CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE EVNLRSPSGE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLFRYS GVSSSFDVLI FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRSGRPTPP IVDGDNGHRH HLEMTLHRNS CRSIPRACKR SLFSDETEAK ENDGEDEDED VVAAAEGGRY GEYYFSRHGR VAEYNLREED REEISRVPVP VQPGNAVFVQ VIHSSHVRSS KYCIVGVSPE FAGKYLGAVE REVVLKRASR GGEWHVLFVH RQNTRGFYGA GWRQFAGDNR LVAHDVCLFE LTMVDAAAGG GGNRRRRWSR RPTMTVHVLR RVRGRFVLLR // ID I1PI24_ORYGL Unreviewed; 469 AA. AC I1PI24; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0402000.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0402000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA03G0402000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA03G0402000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0402000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA03G0402000.1; ORGLA03G0402000.1; ORGLA03G0402000. DR Gramene; ORGLA03G0402000.1; ORGLA03G0402000.1; ORGLA03G0402000. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 368 469 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 368 469 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 469 AA; 51794 MW; 8B454652C17AC8F5 CRC64; MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNGFYQNL TFNSWTSNNM PRNPVYTSFH PAAIEDHHAP LFHSNNHDID PEFLGNRHLH GVDIAGAPPA KATSPATAGG LLTNTAPATM SQIHARCRRR QIYRCCGLLP RAPPPSDPCA FARAAITAAG SARGLLSHLY GGLVFWLVGK RKLGEKRERK RKVVAGMDPP IVFRRSDMES EKNDDNPDQI PVSEPPSMNQ NGENLIIRFN CREYRVILRK ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVTLKMDDF KFETTWNFKY RFWPNNKSRM YVLESTGGFV KHHGLQTGDI FIIYKSSESG KFYVALCLF // ID I1PLK1_ORYGL Unreviewed; 673 AA. AC I1PLK1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0107000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0107000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0107000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0107000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA04G0107000.1; -. DR EnsemblPlants; ORGLA04G0107000.1; ORGLA04G0107000.1; ORGLA04G0107000. DR Gramene; ORGLA04G0107000.1; ORGLA04G0107000.1; ORGLA04G0107000. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 639 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 74714 MW; DF47AAEEFC45A3E0 CRC64; MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL DASNPQPPQP PLRNKRARPP ASPSVVVELP PSFGLWKPPS EAAQTLSFSE PQRAREIFPS IPASIFSASS HVEFNSKNEP SILSNQFYWS MRDSKTDSFS ASTNKARVER KQEPTTVGCR LFGIEISSAV EEALPAATVS GVGYDQTVLS VDVDSDQISQ PSNGNKSDAP GTSSERSPLE SQSRQVRSCT KVIMQGMAVG RAVDLTKLNG YGDLRSKLEE MFDIQGDLCP TLKRWQVVYT DDEDDMMLVG DDPWDEFCSM VKRIYIYSYE EAKLLAPKSK LPVIGDTIKL SSMNSSHESV DLDNHASVTN RDC // ID I1PN33_ORYGL Unreviewed; 393 AA. AC I1PN33; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0160200.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0160200.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0160200.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0160200.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA04G0160200.1; ORGLA04G0160200.1; ORGLA04G0160200. DR Gramene; ORGLA04G0160200.1; ORGLA04G0160200.1; ORGLA04G0160200. DR OMA; FMRRTAN; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 393 AA; 42979 MW; B9D0829F98214FDB CRC64; MLPFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSSR PRPTSFAKTL TQSDANNGGG FSVPRFCAET IFPELDYSSE PPVQSVCAKD VHGVEWTFRH IYRGTPRRHL LTTGWSPFVN KKQLTAGDSI VFMRDEGGNI HVGLRRAKRG FCSIGGDDES LSSMPGWDQY RGLMRRNATA TATGGRTPPK GKVPPENVLT AATRATTGQP FEVLYYPRAS TPEFCVRAAA VRTAMAVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQAS DPVRWPQSPW RLLQVHIHGT NMRQPQLDHD RVVEFLINWP PRR // ID I1PP65_ORYGL Unreviewed; 404 AA. AC I1PP65; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA04G0198400.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0198400.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0198400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0198400.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0198400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA04G0198400.1; ORGLA04G0198400.1; ORGLA04G0198400. DR Gramene; ORGLA04G0198400.1; ORGLA04G0198400.1; ORGLA04G0198400. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; DFRNINA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 404 AA; 43218 MW; 388DDF6EABC90557 CRC64; MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DAGHDANALS LRMPGWQRPA PLRSLELPPH MPAGAAGAES SAASSPSSSS SSKREAHSSL DLDL // ID I1PQL7_ORYGL Unreviewed; 955 AA. AC I1PQL7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0248600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0248600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0248600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0248600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; I1PQL7; -. DR SMR; I1PQL7; -. DR STRING; 4538.ORGLA04G0248600.1; -. DR EnsemblPlants; ORGLA04G0248600.1; ORGLA04G0248600.1; ORGLA04G0248600. DR Gramene; ORGLA04G0248600.1; ORGLA04G0248600.1; ORGLA04G0248600. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR OMA; DYDPMRW; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 852 936 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105224 MW; A8436A93FAC13A2A CRC64; MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRATRQQTM LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVIPVARYN KATYMQPSVG MRFAMMFETE ESSKRRYTGT VVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVSVP GMEIGSANMS SFPRAQGNPY GSLQHIPAVG SELAIMLLNQ SGQTLGSPLS FHQSSYSSII QNVKQNYIPP LTVSTSACLT KQESLPSDDA QHQFHMANMQ NGDLEGSEVQ PVIDSISESK LNATSRDPRN TDSYTSRSTS EQNSKGEPRG KTRRSKKGLP HKTVSEKSDL SSAPSWICDN QQVGLESKLV GCDEQVNCGN IEDSSGALTQ GNFVGQPHGH QVEQKGVLSP PKVESSKSPD GGKSVNSFPN QGCFSQFIDG LDWMTQPSYY QDSNVIQPAG VSENIFSSSA DIPPSMIADT METFQASCLS DCLPNSIQEF ISSPDLNSLT FLSPDMQNLE VQLQHDGSNL PSTSNSFVQM SFSEESASQS ANLSGLHMES THRSINTTSC SQPMSTGGFD AGMYSKLPRL KESQILSLPE IHTNSMGTSA CSMDATEYSL DRSAKPMKPP VRTYTKVQKQ GSVGRSIDVT GFRNYHELRS AIACMFGLQG KLEHPGSSEW KLVYVDYEND VLLVGDDPWE EFINCVRCIR ILSPSEVQQM SENGMHVLND CIQAA // ID I1PQT0_ORYGL Unreviewed; 831 AA. AC I1PQT0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0254900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0254900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0254900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0254900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA04G0254900.1; -. DR EnsemblPlants; ORGLA04G0254900.1; ORGLA04G0254900.1; ORGLA04G0254900. DR Gramene; ORGLA04G0254900.1; ORGLA04G0254900.1; ORGLA04G0254900. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 732 816 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 831 AA; 92410 MW; 3B5B5E643976EB72 CRC64; MSSSSAASIG PPQPPPPPAP PEEGGWLEKK CLNSELWHAC AGPLVCLPTV GTRVVYFPQG HSEQVRLAYV KVAASTNKEV EGHIPNYPNL PAQLICQLHD VTMHADVETD EVYAQMTLQP LNPQEQNDAY LPAEMGIMSK QPTNYFCKTL TASDTSTHGG FSVPRRAAER VFPPLDFTQQ PPAQELIARD IHDIEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRASRP QTVMPSSVLS SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWPSSY WRSVKVGWDE STAGERPPRV SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV ASLHDDSNAL MWLRGVAGEG GFQSLNFQSP GIGSWGQQRL HPSLLSSDHD QYQAVVAAAA ASHSGGYLKQ QFLHLQQPMQ SPQEHCNLNP LLQQQILQQA SQQQIINPDA QNIQTMLSPS AIQQQLQQLQ QMQQVQNDQK QKIQPDQSYQ VPTSAVLPSP TSLPSHLREK FGFSDPNANS SSFITSSSSD NMLDSSFLQG SSKAVDLSRF NQPVASEQQQ QQQQQQAWKQ KFMGSQSVSF GGSVLHNSPT SKDGSVENKI GRDVQNQSLF SPQVDSSSLL YNMVPNLTSN VSDGNLSTIP SGSTYLQNAM YGCLDDSSGL LQNTGENDPA TRTFVKVYKS GSVGRSLDIT RFSNYAELRE ELGQMFGIKG QLDDPDRSGW QLVFVDREND VLLLGDDPWE SFVNSVWYIK ILSPEDVHKM GKQGNDPRYL S // ID I1PQW6_ORYGL Unreviewed; 433 AA. AC I1PQW6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA04G0258500.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0258500.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0258500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0258500.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0258500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA04G0258500.1; ORGLA04G0258500.1; ORGLA04G0258500. DR Gramene; ORGLA04G0258500.1; ORGLA04G0258500.1; ORGLA04G0258500. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR OMA; GFVKQHG; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 297 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 297 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 433 AA; 48732 MW; 1C96A528F8DEB362 CRC64; MADTRGSTSS GGGDDRGREG HDDFAGGGQY NRYHRILEAV PSPLVRRENV VHHQYPTGLI HHPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN FQDLRLMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTHAKK AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSHN SANLTIRFNC REYRVILRKE LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE ECGFAISLLT KKT // ID I1PQW7_ORYGL Unreviewed; 501 AA. AC I1PQW7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA04G0258600.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0258600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0258600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0258600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0258600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA04G0258600.1; ORGLA04G0258600.1; ORGLA04G0258600. DR Gramene; ORGLA04G0258600.1; ORGLA04G0258600.1; ORGLA04G0258600. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 368 470 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 368 470 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 501 AA; 55012 MW; 35D337ED9B64625F CRC64; MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNGFYQNL TFNSWTSNNM PRNPVYTSFH PAAIEDHHAP LFHSNNHDID PEFLGNRHLH GVDIAGAPPA KATSPATAGG LLTNTAPATM SQIHARCRRR QIYRCCGLLP RAPPPSDPCA FARAAITAAG SARGLLSHLY GGLVFWLVGK RKLGEKRERK RKVVAGMDPP IVFRRSDMES EKNDDNPDQI PVSEPPSMNQ NGENLIIRFN CREYRVILRK ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVTLKMDDF KFETTWNFKY RFWPNNKSRM YVLESTGGFV KHHGLQTGDI FIIYKSSESG KFVSSVPFTS TTYGESDGED YSGDRSSPGA GEVADEDFQK A // ID I1PR81_ORYGL Unreviewed; 523 AA. AC I1PR81; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA04G0270000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA04G0270000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA04G0270000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA04G0270000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA04G0270000.1; ORGLA04G0270000.1; ORGLA04G0270000. DR Gramene; ORGLA04G0270000.1; ORGLA04G0270000.1; ORGLA04G0270000. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 523 AA; 56689 MW; BFACF6D4CB7B5CE7 CRC64; MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APAPAPAAAE LAEAESQEFR YYAKQLTQSD ANNGGGFSVP RLCADHIFPA LNLDDDPPVQ SLTMGDLQGD SWEFRHIYRG TPRRHLLTTG WSKFVNAKQL VAGDTVVFMW CGAPAPERKL LVGVRRAARY SGESACNARG RVQPQEVMEA VRLAAEQAAF RVTYYPRHGA GEFVVPRVEV DKGLTTPWRC GMQVRAQVME AEDTRRLAWL NGTLTNLRHQ QIWRTLEVEW DASAASSSMK NRFVNPWQVQ PVDFPPLPMG LKISNNNISA PVCNGDSLLV PPILMHPQPQ PPADIQGARH NNGHAYADIP SSSTPSMVRT QQLFPRDLQI LVPHTDIVTP QNGSPPDNPV NTPLSASDGM KTIQLFGVTI TSPVQGDTNG AFASAQVNQV PEGVDDEPAT EEASDTSLPD SLTNGHNQDG ARL // ID I1PWN9_ORYGL Unreviewed; 279 AA. AC I1PWN9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA05G0178700.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA05G0178700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA05G0178700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA05G0178700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA05G0178700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA05G0178700.1; ORGLA05G0178700.1; ORGLA05G0178700. DR Gramene; ORGLA05G0178700.1; ORGLA05G0178700.1; ORGLA05G0178700. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 31564 MW; F3C76E76EE2B1E8A CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TLASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA DEEAVGDKDT STEDAAEQDD SPNAEPLKGA KRRKLRGRR // ID I1PX91_ORYGL Unreviewed; 687 AA. AC I1PX91; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA05G0198900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA05G0198900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA05G0198900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA05G0198900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA05G0198900.1; -. DR EnsemblPlants; ORGLA05G0198900.1; ORGLA05G0198900.1; ORGLA05G0198900. DR Gramene; ORGLA05G0198900.1; ORGLA05G0198900.1; ORGLA05G0198900. DR eggNOG; ENOG410JSIU; Eukaryota. DR eggNOG; ENOG41108RS; LUCA. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 687 AA; 74341 MW; D00B399B06C6D6C1 CRC64; MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALXXXXX XXXXXXXXXX XXXXXXXXVP PAGAAAVPPH VACRVVGVEL RADAATDEVY ARLALVAEGE MLQRNFREGG GEDGAGEMEG CDAEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKTVRPS QELIAVDLHG TQWKFRHIYR GQPRRHLLTT GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG VRRAVQLRNE ALFEPVNSSD SKLRILSSVA SSLENKSVFH ICFNPRSGAS EFIVPYWRLL KSLNHPFSIG MRFRVCYESE DANERSAGLI SGISEVDPIR WPGSRWKCLL VRWDDSTDSS HQNRVSPWEI ERVGGSVSVT HSLSSGSKRT KLHFPQGSLD TPFLNGNGHP DSMGTENFHR VLQGQEFRGS RSHGVVCSES PGVPNFQSPD NRRFSADMRG YMMPASGPPQ RNTEFTYQPI GFSESLGFPE VLQGQEMSQV VPLFRGATFG ARTQNDRVVS ANSVHRSAAQ SGLLASTLGH PISQFTLSSS KVSSPSSVLM FNQATAPNHE TVGGTNNKGM HVSQFASQEM LSETVTWPGT QRQTPSEITS NQFALARIPA PPSGAESGLP KRDAGRSSCR LFGFSLTGNM LGEDGEGLDD GAIEAGCENP PVLELFGHSH STPGALHALC AAAPLGM // ID I1PXX9_ORYGL Unreviewed; 712 AA. AC I1PXX9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA05G0222700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA05G0222700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA05G0222700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA05G0222700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA05G0222700.1; -. DR EnsemblPlants; ORGLA05G0222700.1; ORGLA05G0222700.1; ORGLA05G0222700. DR Gramene; ORGLA05G0222700.1; ORGLA05G0222700.1; ORGLA05G0222700. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 78057 MW; 36AEB5EA09D7E0E6 CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACAGPVAPL PRKGGVVVYL PQGHLEHLGD ASAAAAAAAA VPPHVFCRVV DVTLLADAAT DEVYAQLSLV PEKEEVARRA DDGEGEDGDG MKQRFARMPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGV RRAAQLKNGS AFPALYNQCS NLGTLANVAH AVATESVFNI YYNPRLSQSE FIVPYWKFMK SLSQPFSVGL RFKMRYESED ATERRYTGII TGSGDTDPMW HGSKWKCLLV RWDDDAEFRR PNRVSPWEIE LTSSVSGSHL STPHSKRLKP CLPHVNPEYM VPRGGGCPDF AESAQFHKVL QGQELLGFKS HGGTAAATSQ PCEARHLQYI DERSCSSDAS NSILGVPRLV DRAPLGNPGF SYHCSGFGES QRLQKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH GRAAFHGPPA PALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RVIDISTMDM MI // ID I1PYT8_ORYGL Unreviewed; 199 AA. AC I1PYT8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA06G0005000.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA06G0005000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA06G0005000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA06G0005000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA06G0005000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA06G0005000.1; ORGLA06G0005000.1; ORGLA06G0005000. DR Gramene; ORGLA06G0005000.1; ORGLA06G0005000.1; ORGLA06G0005000. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR OMA; IDCRRRA; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 21559 MW; E06BAE839F8BF81A CRC64; MATIVAWESR SLQLQGGGGG HGGGGGERRE YMFEKVVTPS DVGKLNRLVV PKHYAEKYFP LGPAARTSPA GTVLCFEDAR GGGGGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL FGVDLQLRAD ASPALDLQL // ID I1Q094_ORYGL Unreviewed; 237 AA. AC I1Q094; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA06G0055700.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA06G0055700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA06G0055700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA06G0055700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA06G0055700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA06G0055700.1; -. DR EnsemblPlants; ORGLA06G0055700.1; ORGLA06G0055700.1; ORGLA06G0055700. DR Gramene; ORGLA06G0055700.1; ORGLA06G0055700.1; ORGLA06G0055700. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 27541 MW; 7AD2A3828DE1516A CRC64; MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESAAKPSP VKQRKRKARA PPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATEEQRDY AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRT KFKVYIIRAS SYYETDD // ID I1Q0A6_ORYGL Unreviewed; 1055 AA. AC I1Q0A6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA06G0056900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA06G0056900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA06G0056900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA06G0056900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA06G0056900.1; -. DR EnsemblPlants; ORGLA06G0056900.1; ORGLA06G0056900.1; ORGLA06G0056900. DR Gramene; ORGLA06G0056900.1; ORGLA06G0056900.1; ORGLA06G0056900. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 940 1024 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1055 AA; 116917 MW; 7DF9315023D745CB CRC64; MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSS LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG SDSIGQLKQS PLQQDPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPSA SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG // ID I1Q3U4_ORYGL Unreviewed; 390 AA. AC I1Q3U4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA06G0180700.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA06G0180700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA06G0180700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA06G0180700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA06G0180700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA06G0180700.1; ORGLA06G0180700.1; ORGLA06G0180700. DR Gramene; ORGLA06G0180700.1; ORGLA06G0180700.1; ORGLA06G0180700. DR eggNOG; ENOG410JQPS; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 348 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 348 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 390 AA; 43258 MW; 4237E37015146C78 CRC64; MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE ESGRRAAAVL VVGPLGKVWR VELRRSPAGD GEAWLGGGWS ELAAAHGLGE GWGVVLRLER RGVASLRVFD PGFCLARFCT PHAGMRTKDR PRFIKLLQQE DLEKMKIPEK FVQQQLTETY TNNHQNAIIV CPLGKFWRVE LQREQPDVLL RDGWAPFLAA HDLSEGNILL VRYEGNMVFT VEVFLQNGCL KEYKTAALYL TDGTEGPSNA PQQSAAKVGV SPVKWKRTRR IEGTCLEGPN RKSRASPISV KVEQHKKHVS IVSQNSFTKE MTAYSIHSLL SVRGTFCSQI GLLEACAITL KISMKKKGSW RVAFKTANTY GYINGPGWRK FCLENEVKEG // ID I1Q4N2_ORYGL Unreviewed; 698 AA. AC I1Q4N2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA06G0209500.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA06G0209500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA06G0209500.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA06G0209500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA06G0209500.1; -. DR EnsemblPlants; ORGLA06G0209500.1; ORGLA06G0209500.1; ORGLA06G0209500. DR Gramene; ORGLA06G0209500.1; ORGLA06G0209500.1; ORGLA06G0209500. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75674 MW; 2CC72F896F8DB3C5 CRC64; MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGATAAAAA QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL PPPPPPTPAA GGNYGGFSMF LRGDDDGNKM AAAARGKVRA RVRPEEVVEA ANLAVSGQPF EVVYYPRAST PEFCVKAGAV RAAMRTQWFA GMRFKMAFET EDSSRISWFM GTVSAVQVAD PIRWPNSPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLAPFSPP RKKLCVPLYP ELPIDGQFPT PMFHGNPLAR GVGPMCYFPD GTPAGIQGAR HAQFGISLSD LHLNKLQSSL SPHGLHQLDH GMQPRIAAGL IIGHPAARDD ISCLLTIGSP QNNKKSDGKK APAQLMLFGK PILTEQQISL GDAASVAVKK SSSDGNAENT VNKSNSDVSS PRSNQNGTTD NLSCGGVPLC QDNKVLDVGL ETGHCKVFMQ SEDVGRTLDL SVVGSYEELY RRLADMFGIE KAELMSHVFY RDAAGALKHT GDEPFSEFTK TARRLNILTD TSGDNLAR // ID I1Q505_ORYGL Unreviewed; 1162 AA. AC I1Q505; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA06G0221800.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA06G0221800.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA06G0221800.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA06G0221800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA06G0221800.1; -. DR EnsemblPlants; ORGLA06G0221800.1; ORGLA06G0221800.1; ORGLA06G0221800. DR Gramene; ORGLA06G0221800.1; ORGLA06G0221800.1; ORGLA06G0221800. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1028 1112 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 153 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 597 628 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1162 AA; 128522 MW; EE8654B9C9E4979F CRC64; MMKQAQQVPP PPASSAVTTT TAMAAATAAA VVGSGCEGEK TKAPAINSEL WHACAGPLVS LPPAGSLVVY FPQGHSEQVA ASMQKDVDAH VPSYPNLPSK LICLLHNVTL HADPETDEVY AQMTLQPVTS YGKEALQLSE LALKQARPQT EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QELQARDLHD NVWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDEKQQLLLG IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVIPFAKYQ KAVYGNQISL GMRFRMMFET EELGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSIW EIEPVAAPFF ICPPPFFGAK RPRQLDDESS EMENLLKRAM PWLGEEICIK DPQTQNTIMP GLSLVQWMNM NMQQSSSFAN TAMQSEYLRS LSNPNMQNLG AADLSRQLCL QNQLLQQNNI QFNTPKLSQQ MQPVNELAKA GIPLNQLAVS TKPQEQIHDA SNLQRQQPSM NHMLPLSQAQ TSLGQAQVLV QNQMQQQHAS STQGQQPATS QPLLMPQQQQ QQQHQEQQQQ QQQQQQQQQK LLQQQQQQLL LQQQQQLSKM PAQLSNLANQ QFQLTDQQLQ LQLLQKLQQQ QQSLLSQPAV TLAQLPLIQE QQKLLLDMQQ QLSNSQTLSQ QQMMPQQSTK VPSQNTPLPP VQQEPQQKLL QKQAMLADTS EAAVPPTTSV NVISTTGSPL MTTGATHSVL TEEIPSCSTS PSTANGNHLL QPILGRNKHC SMINTEKVPQ SAAPMSVPSS LEAVTAIPRM IKDSPKLNHN VKQSVVASKL ANAGTGSQNY VNNPPPTDYL ETASSATSVW LSQNDGLLHQ NFPMSNFNQP QMFKDAPPDA EIHAANTSNN ALFGINGDGP LGFPIGLGTD DFLSNGIDAA KYENHISTEI DNSYRIPKDA QQEISSSMVS QSFGASDMAF NSIDSTINDG GFLNRSSWPP AAPLKRMRTF TKVYKRGAVG RSIDMSQFSG YDELKHALAR MFSIEGQLEE RQRIGWKLVY KDHEDDILLL GDDPWEEFVG CVKCIRILSP QEVQQMSLEG CDLGNNIPPN QACSSSDGGN AWRARCDQNS GNPSNGSYEQ FE // ID I1Q8K9_ORYGL Unreviewed; 403 AA. AC I1Q8K9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA07G0045100.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA07G0045100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA07G0045100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA07G0045100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA07G0045100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA07G0045100.1; ORGLA07G0045100.1; ORGLA07G0045100. DR Gramene; ORGLA07G0045100.1; ORGLA07G0045100.1; ORGLA07G0045100. DR OMA; HRENRAG; -. DR OrthoDB; EOG09360CVW; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 403 AA; 44190 MW; 31AB1E564A5452B7 CRC64; MAALPPPPLA DDGDGIVDRA MWLACAAPNS GRLPAVGSVV FYFVDGHAAQ FCQFPVPLLE QLAVPGPRVF LCTVAGVRLR ADALTNEAYA DITLDPVADN DVPHLAPAPA PAPAAAAGGQ QFRYFVKTLM ISDFDFRIRF SAPMADAKGV FPPLVDAKAV QPLLVKDLQG SPMTFDYGRK GKRVTLAKVW KKFRDDMDFV DGDSVIFMRR RDDGELYVGV RRQRTLERPL RNTMRRSRSP TPPQAAVQEA VLAAAGQAAA GERFRVAYRS RQDGDEFVVP REAVDEGLRA RLTSLAEVEF VWAVEDGAPP IVGPRGKVTA ITTGQLWRNL EIVWDGNSEM DMSANFWQVR PVEEVDISPS TPPKRLKNCE IDDTASSSVS VDNGDEQVPT MRQRLEALFP DNI // ID I1Q982_ORYGL Unreviewed; 202 AA. AC I1Q982; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA07G0067400.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA07G0067400.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA07G0067400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA07G0067400.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA07G0067400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA07G0067400.1; ORGLA07G0067400.1; ORGLA07G0067400. DR Gramene; ORGLA07G0067400.1; ORGLA07G0067400.1; ORGLA07G0067400. DR OMA; MTIGWKE; -. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 202 AA; 22947 MW; 009AECD16E6BEA2B CRC64; MVKIKTASQD YLPIPVAVTK ASRLKHGRTL KLMTAHGLKI RVKVAEARDK LYMTIGWKEF IQETGLKMGE SRSVVFRTLS KSRLNVIIFN KEGYSRCPIP DKAAKALINN QSSSAPSFST KSTAPRHPSS TNVEANTKRI VKDMCCYNKR MKLSSEVKNY VRDIAQFLDY SSKFYIVTIK NIHEVRQGGK IFHLLSIYSL EK // ID I1QBM6_ORYGL Unreviewed; 958 AA. AC I1QBM6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA07G0151800.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA07G0151800.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA07G0151800.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA07G0151800.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA07G0151800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA07G0151800.1; ORGLA07G0151800.1; ORGLA07G0151800. DR Gramene; ORGLA07G0151800.1; ORGLA07G0151800.1; ORGLA07G0151800. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR OMA; PAGMNQI; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 456 557 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 711 761 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 456 557 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 958 AA; 106077 MW; D38B5970CC58E51A CRC64; MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT PQHQQQQQQQ QGPPGHAPPQ QRPRICFNAH CKDPKSDGPR RRGWRLRNGD FAELCDRCYH SFEHGGFCET FHLEVAGWRN CESCGKRLHC GCIVSVHAFV HLDAGGVECV MCARKSHAAM APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAFE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT QHTTLDPTYA YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDPCSSV STTFKLDSHH PSILKDDPSA VPAGLSPNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ AQLRNGRPRM DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR LVLPKKCAEA YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVPPPPEAN NKVVVPDSSP NAAVPRPIKV NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI KRFRMDSEES MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI KPGAAKKTKG KVDTDNIDVS DGLDTLANLA ILGEGESLPS QPTTRHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCMT VRRRFRTLMM RREKRQQSEK DSGVPRKREP GQSSEPVPQS GSGAHPTSTS SPPQRADTNG EGPEDMSIDN KRTSSPVKNQ IDLNSQPERE DEQSPKSDAT RLLRDNPT // ID I1QD83_ORYGL Unreviewed; 949 AA. AC I1QD83; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA07G0207500.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA07G0207500.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA07G0207500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA07G0207500.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA07G0207500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA07G0207500.1; ORGLA07G0207500.1; ORGLA07G0207500. DR Gramene; ORGLA07G0207500.1; ORGLA07G0207500.1; ORGLA07G0207500. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 623 673 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 949 AA; 104139 MW; 42E001588C21EE3B CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK QRQSEREEAE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRD GDVTMFDKVD INKGHIDLNF HPTAVRDEER HGGQPRVSMV SLLEVANRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ PALVEREERT SNNDGGRVAT AEQPESMAVD EAGDNQPDKA AGDSAAALA // ID I1QFT7_ORYGL Unreviewed; 290 AA. AC I1QFT7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0028800.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA08G0028800.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA08G0028800.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA08G0028800.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA08G0028800.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA08G0028800.1; ORGLA08G0028800.1; ORGLA08G0028800. DR Gramene; ORGLA08G0028800.1; ORGLA08G0028800.1; ORGLA08G0028800. DR eggNOG; ENOG410JS8F; Eukaryota. DR eggNOG; ENOG41116NU; LUCA. DR OMA; FNVECSG; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 34 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 290 AA; 30991 MW; 7966E829C0A98C8D CRC64; MYMDLTLGGA LLQVEEATEE EEEEEEEEQV LGQEPAPAAA AAALVLGRRH GVVVGGGGGG VVVAAEREHM FDKVVTPSDV GKLNRLVVPK QHAERFFPAA AAGTQLCFED RAGTPWRFRY SYWGSSQSYV MTKGWSRFVR AARLSAGDTV SFSRAADGRY FIDYRHCHRH GGRDISFASA ATAMPAAAAA AWPLFGRVQT AAPVSYGGGH GSAATATMFL DTVAPVAAAG GHRGEVGPSG QRSFRLFGVN VECGGDVDAA AEEEDADDDV DDGDHRRGEE MELVMWTNHR // ID I1QHK9_ORYGL Unreviewed; 391 AA. AC I1QHK9; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0091000.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA08G0091000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA08G0091000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA08G0091000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA08G0091000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA08G0091000.1; ORGLA08G0091000.1; ORGLA08G0091000. DR Gramene; ORGLA08G0091000.1; ORGLA08G0091000.1; ORGLA08G0091000. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR OMA; RMGDSMM; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44566 MW; 165E40E1E89EC249 CRC64; MGTWCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD IPEEIQLETH NRNSYTVRVD KSQEKVIFAA GWAQFVKTFD LRMGDSMMFR FKGNSQFDVI IFDQVGREKV CSVAVDDYLD PNVQEGRTDA TETLNSSRAH SQDDYLDHNV QEGRTNATET LNSSRAHSQP MPMQTPATET LNSSRAHSQD MPMQSPATET LNSSRAHPQP MPMQLPTETV NHFHAPHYPM QMPIENMALS RTQAMPTQMQ SPPTYRWTQV QRDNLRYSLP SEDQGCRVGV IPDPIIGRRT KLNPVQEKVV NFKIQHIHSE VPIFVAVIKR SNVSGVLSTL SVAKRYVDEY LGGERFISLS RLGGKWGIRL AGGGGSGTRM V // ID I1QHL1_ORYGL Unreviewed; 270 AA. AC I1QHL1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0091200.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA08G0091200.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA08G0091200.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA08G0091200.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA08G0091200.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; I1QHL1; -. DR EnsemblPlants; ORGLA08G0091200.1; ORGLA08G0091200.1; ORGLA08G0091200. DR Gramene; ORGLA08G0091200.1; ORGLA08G0091200.1; ORGLA08G0091200. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR OMA; FSENNDC; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 30592 MW; DB36FD2A985E6F4B CRC64; MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV QRGNSSKGNM TTMSSSSMSS GYNSIIICIS // ID I1QK88_ORYGL Unreviewed; 1116 AA. AC I1QK88; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA08G0183900.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA08G0183900.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA08G0183900.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA08G0183900.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA08G0183900.1; -. DR EnsemblPlants; ORGLA08G0183900.1; ORGLA08G0183900.1; ORGLA08G0183900. DR Gramene; ORGLA08G0183900.1; ORGLA08G0183900.1; ORGLA08G0183900. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 998 1082 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1116 AA; 123690 MW; F3CD83B6A6E7C642 CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASASE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH TQFLQQNNIQ FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ QPHVQHQQIP QQLHHQQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGRQ LLKTDDVPST STSPSTNSNP VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEQRPATGQ DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP QEEMQMRLVG DFGDSFLPNQ ACSSSDGGHP WRITGD // ID I1QTD8_ORYGL Unreviewed; 272 AA. AC I1QTD8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA10G0047100.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA10G0047100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA10G0047100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA10G0047100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA10G0047100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA10G0047100.1; ORGLA10G0047100.1; ORGLA10G0047100. DR Gramene; ORGLA10G0047100.1; ORGLA10G0047100.1; ORGLA10G0047100. DR OMA; TEDIEVQ; -. DR OrthoDB; EOG09360BW5; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 30750 MW; DEADB3833E62AFBD CRC64; MVPDQDGELR HDVCSLSTSL RLTAHVTSSI VHEQSSNIRY GENRKHGQRY AYHEPLPPEI VARCNGHNGK HLTLVTRNSK PVNVRLEKRG QSFYISKGWK KFVELTDLRV GQCVRFSVSS PSTLDLLILD KHGTSLAIPP SKRDLKLKSK RSTHQDSKGH PSNTDPGPSR IINRRVTKSE SSANTQLLVQ YFSKRYSIDH LEQLMTGRTE DIEVQTLVGP SVNMVLHTST DHRCNLKKGW TDFALSNGIK LNTVCIFHFY KTTHLGVIVD IF // ID I1QVC2_ORYGL Unreviewed; 698 AA. AC I1QVC2; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA10G0115500.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA10G0115500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA10G0115500.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA10G0115500.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA10G0115500.1; -. DR EnsemblPlants; ORGLA10G0115500.1; ORGLA10G0115500.1; ORGLA10G0115500. DR Gramene; ORGLA10G0115500.1; ORGLA10G0115500.1; ORGLA10G0115500. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 603 683 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75592 MW; 1999EAD03D52ED79 CRC64; MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAVAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV AYYPRASTPE FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVAWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF VVSSAPAHDN ISCLLSIGTP QVAEKSDDRK TTPHIMLFGK AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA // ID I1QVG4_ORYGL Unreviewed; 316 AA. AC I1QVG4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA10G0119700.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA10G0119700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA10G0119700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA10G0119700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA10G0119700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA10G0119700.1; ORGLA10G0119700.1; ORGLA10G0119700. DR Gramene; ORGLA10G0119700.1; ORGLA10G0119700.1; ORGLA10G0119700. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 33536 MW; 6103A5C890F08ACA CRC64; MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAERY FPLDAAAGAG GGGGGGGGGG GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGSFM FPPTAAPPSH SHHHHQRHHP PLPSVPLCPW RDYTTAYGGG YGYGYGYGYG GGSTPASSRH VLFLRPQVPA AVVLKSVPVH VAAASAVQEA ATTTRPKRVR LFGVNLDCPA AMDDDDDIAG AASRTAASSL LQLPSPSSST SSSTAGKKMC SLDLGL // ID I1QXU4_ORYGL Unreviewed; 278 AA. AC I1QXU4; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA11G0033600.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA11G0033600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA11G0033600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA11G0033600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA11G0033600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA11G0033600.1; ORGLA11G0033600.1; ORGLA11G0033600. DR Gramene; ORGLA11G0033600.1; ORGLA11G0033600.1; ORGLA11G0033600. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR OMA; QHAGESQ; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 30843 MW; AA8D69C0D21051A0 CRC64; MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD VVHFERVRGS FGVGDRLFIG CRRRGDTAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS TSGGGSYPTS PANSYAYRAA DHDHGDMHHA DESPRDTDSP SFSAGSAPSR RLRLFGVNLD CGPEPEADTT AAATMYGYMH QQSSYAAMSA VPSYWGNS // ID I1QYD8_ORYGL Unreviewed; 381 AA. AC I1QYD8; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA11G0053000.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA11G0053000.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA11G0053000.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA11G0053000.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA11G0053000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA11G0053000.1; -. DR EnsemblPlants; ORGLA11G0053000.1; ORGLA11G0053000.1; ORGLA11G0053000. DR Gramene; ORGLA11G0053000.1; ORGLA11G0053000.1; ORGLA11G0053000. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 273 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 273 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43019 MW; 2F47A68055A27A4E CRC64; LFFGVGKEGI QLIRIRFEHL KIPSSFNQCL QNQPTGMVSL VDRSGNKWSA ELTSDSEGFF FVHGWKEFVR DNSIQCGQFL VFTYDKRSQF SVTVFEPSGI DKISTFSAHP SKNVIIKTES DEGGMVTAAI TTEKMAPALK ENNGITGKRT RDVDYLMEDR VVVFKKSSEA NVCESSRRKR AGASAGKSKV TSTSHNSTRG SSCSSDEDNS SSKSPNPPFL MRFLSGEVSR RGRCVSKGQR QLTVISQRRP VTEAEKDHAL QRAREFKSKN PFAVQIMMES YVYVGFFMNI PCEFVRECLP RTNKRITLWD PQGKAWEVNY VYYSDRSVGS FSGGWGKFAV GNNLEKFDVC VFELVQKDNI KVHIYRVVPE ITPHKLRSDP K // ID I1R0K1_ORYGL Unreviewed; 784 AA. AC I1R0K1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA11G0129300.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA11G0129300.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA11G0129300.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA11G0129300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA11G0129300.1; -. DR EnsemblPlants; ORGLA11G0129300.1; ORGLA11G0129300.1; ORGLA11G0129300. DR Gramene; ORGLA11G0129300.1; ORGLA11G0129300.1; ORGLA11G0129300. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 182 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 656 740 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 80 182 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 784 AA; 87525 MW; 425582F5E867C0B4 CRC64; QVEASTNQVG EQRMQLYNLP WKILCEVMNV ELKAEPDTDE VYAQLTLLPE SKQQEDNGST EEEVPSAPAA GHVRPRVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHGVEW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE NGELRVGVRR AMRQQANVPS SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPAEFV VPYDRYMESL KRNYSIGMRF KMRFEGEEAP EQRFTGTIVG MGDSDPAGWP ESKWRSLKVR WDEASSIPRP ERVSPWQIEP AVSPPPVNPL PVPRTKRLRP NATALPADSS AIAKEAATKV VVESEPNGTQ RTFQTQENAT PKSGFGNSSE LESAQKSIMR PSGFDREKNN TPIQWKLGSD GRMQMSKPES YSEMLSGFQP PKDVQTPQGF CSLPEQITAG HSNFWHTVNA QYQDQQSNHN MFPSSWSFMP PNTRLGLNKQ NYSMIQEAGV LSQRPGNTKF GNGVYAALPG RGTEQYSGGW FGHMMPNSHM DDTQPRLIKP KPLVVAHGDV QKAKGASCKL FGIHLDSPAK SEPLKSPSSV VYDGTPQTPG ATEWRRPDVT EVEKCSDPSK AMKPLDTPQP DSVPEKPSSQ QASRNMSCKS QGVSTRSCKK VHKQGIALGR SVDLTKFKGY EELIAELDDM FDFNGELKGP KKEWMVVYTD NEGDMMLVGD DPWIEFCDMV HKIFIYTREE VQRMNPGTLN SRSEDSHANS MERGSVGREM RGCLSTSSLN SENC // ID I1R481_ORYGL Unreviewed; 277 AA. AC I1R481; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA12G0033700.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA12G0033700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA12G0033700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA12G0033700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA12G0033700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA12G0033700.1; -. DR EnsemblPlants; ORGLA12G0033700.1; ORGLA12G0033700.1; ORGLA12G0033700. DR Gramene; ORGLA12G0033700.1; ORGLA12G0033700.1; ORGLA12G0033700. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31065 MW; 17D1DE4E68EB9C2B CRC64; MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS YDPTSPANSY AYHRSVDQDH SDILHAGESQ RDADAKSSSA ASAPPPSRRL RLFGVNLDCG PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSVFFQF // ID I1R6D5_ORYGL Unreviewed; 841 AA. AC I1R6D5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA12G0109100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA12G0109100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA12G0109100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA12G0109100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA12G0109100.1; -. DR EnsemblPlants; ORGLA12G0109100.1; ORGLA12G0109100.1; ORGLA12G0109100. DR Gramene; ORGLA12G0109100.1; ORGLA12G0109100.1; ORGLA12G0109100. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 841 AA; 92300 MW; 6416263C632111CD CRC64; MAAAATAAAS PVEGLTGGGG GGGGGVDGLF VELWRACAGP LVTVPAVGER VFYLPQGHIE QVEASTNQVA EQQGAPLYNL PWKIPCKVMN VELKAEPDTD EVYAQLTLLP EKQQDGNGSG NGYVSKDKVE EEEVVPPAAT ERPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QHPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG ELRVGVRRAM RQQANIPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPSEFVVP RDLYEESLKR NHSIGMRFKM TFEGEEAAEQ RFTGTIVGVG DSDPSGWADS KWRSLKVRWD EAASVPRPDR VSPWQIEPAN SPSPVNPLPA PRTKRARPNV LASSPDLSAV NKEVASKVMA NSQQNGLPRA FHSQENMNLR SRFGDSNELN TSQKLTTWSS GSNQEKNNVS VQRELGSQSW MQMRRPDGSS EILSGFQPLK DTRNPLSSFP SQISGNRSNT WNTINVHYPD QNVNHNMYPG TWSLMPPNTG FGVNQQNYLM TPDITLPQRS LNAKFGGNGA FTSLRAHGID QRSSGWLGHI EPSSHIDDAS SSLIKPQPLV IDHNVQKAKG SSCMLFGISL DSPAKPELLI SPPSVAFDGK LQQDALEEDE CSDPSKTVKP LDGAQHDSAT EKHQSCPDGT KNIQSKQQNG SSRSCKKVHK QGIALGRSID LTKFTCYDEL IAELDQMFDF NGELNSSSKN WMVVYTDNEG DMMLVGDDPW NEFCNMVHKI FIYTREEVQK MNPGALNSRS EDSRSTSVER GLVGEGLQGG LSTPSLNSEN C // ID I1R7J5_ORYGL Unreviewed; 661 AA. AC I1R7J5; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA12G0150100.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA12G0150100.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA12G0150100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA12G0150100.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA12G0150100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA12G0150100.1; ORGLA12G0150100.1; ORGLA12G0150100. DR Gramene; ORGLA12G0150100.1; ORGLA12G0150100.1; ORGLA12G0150100. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR OMA; PTKFANF; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 437 535 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 618 658 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 437 535 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 618 658 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 75236 MW; 282DBDE0C5110558 CRC64; MGDQKRSFIN VMIGDFVAVP TKFANFIRGQ ISEVVKLEVP NGKTYDVQVA KEHNELVLRS GWGAFARDYE LKQCDILVFT YSGSSRFKVR IFNPSGCEKE LSCVMMNNTP CGHEGSMSYH DNHLQSPSES SLLFNISLPP HSPFQELSGV DSTSLLVSDP TNMQQFCLRC SWTNPKRLAK PSLAIASLSH QHLAFDKTRC MFILKIENDT LKTILKMFAK NVQGLISGVA KLEVPDGKTY DVEISKEHNE LVFRSGWEVF AIAYELEQGD ILAFGYSGNS HFKVQIFNPS NCEKELSCVV MNRSISDDNH RQSPRRERMN KPSTTCMDCI TNHYWLHMDD RERYFFKVMM SVSDIKDELA IPKKFAANVR GKIPEQVRLE VSDDVPSSED IKDPMSSGGL QKSKKSCYVL PMLYNMTSAQ EAEVLALEKK IQPQIPLYIT AMDKTSVASG SLVFSKDYAV RYLLDQNRTI KLCQSGGSKT WDISLDMDTD DLYALSTGWL DFFRGNLLQE GDICVFEASM SKRGVALTFH PFKESHCPKS SEYTLSTKSP TRRVPKRDYF ATNLTNLTDQ QERKCFSVKY ASKYLPHKDQ NMRLRLPETK YKCKAALHID TSTNLHKLLK GWGKFVNDNK LEIHDICLFQ LMKNKKKLTM TVHIIRKGEC S // ID I1R7J6_ORYGL Unreviewed; 490 AA. AC I1R7J6; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA12G0150200.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA12G0150200.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA12G0150200.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA12G0150200.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA12G0150200.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA12G0150200.1; ORGLA12G0150200.1; ORGLA12G0150200. DR Gramene; ORGLA12G0150200.1; ORGLA12G0150200.1; ORGLA12G0150200. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR OMA; EYLPRES; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 389 487 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 389 487 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 490 AA; 55972 MW; 490A864A89079445 CRC64; MEKSHRVCKN CVANHYWLHM DNHGKSFIKV MITDFKNGVT IPAKFARNFG GQMSGTVKLE TRNGKTYEVQ VAKELNNLVL RSGWERFASA YELEKGDILV FIYSGNSHFK VWIYDPSACE KELPCIITEQ LPRVQQRSIS HNNHTQLKRN AKSAKLYVDS SGHSKETSEI NPANSPSWKP TERVPSSEEL DEPVDLANVQ KATKSFYSLP RMCNMTSAQK AEVDALEKRI KPQIPFYITV MDKASATDGL LAISKDYAVS YLLDKNETIK LCHSGRSMTW DISLDIDTDD QYALSTGWLD FIRNNHLQEG DICVFEASKN KRGVALIFHP LKQSHHPKPP GCVPSTKFPR HGVSKPNYIV SRFTTLSGQL KIKVEAKVQA IQSEIPIFVA VMRESFIRGR SRYMCFSAKY AAKYLPREKN KIMRLRLPNK SYKYKAVFKI NNKVHKLGGG WGKFVDDNKI KLGDICLFQL MKNKKKLMMM VHIIRKSEFC // ID I1R7J7_ORYGL Unreviewed; 354 AA. AC I1R7J7; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA12G0150300.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA12G0150300.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA12G0150300.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA12G0150300.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA12G0150300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; I1R7J7; -. DR EnsemblPlants; ORGLA12G0150300.1; ORGLA12G0150300.1; ORGLA12G0150300. DR Gramene; ORGLA12G0150300.1; ORGLA12G0150300.1; ORGLA12G0150300. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR OMA; NFKGQIT; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40499 MW; FE89ACCC695B0394 CRC64; MGEKGCESCR KWQEHYYREH MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL KSPSGETWRV GVAKVADELI LKSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTGKKNSYMC KNFNSIGGQV AGQYLSSDSE DTSTPSVLIG SPHKASTSKK LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL QPGNPVFVVV LQTAHVRRRN ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN TTRGFNCHRW IKFIRENRLR EGNVCIFELM KGARRPTMTV HVIGKADNRF VLLG // ID I1R7K0_ORYGL Unreviewed; 366 AA. AC I1R7K0; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA12G0150600.1}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA12G0150600.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA12G0150600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA12G0150600.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA12G0150600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; ORGLA12G0150600.1; ORGLA12G0150600.1; ORGLA12G0150600. DR Gramene; ORGLA12G0150600.1; ORGLA12G0150600.1; ORGLA12G0150600. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41851 MW; 0C1F7C1848A89390 CRC64; MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL KAPSGETWCV SVEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT KTNPNKDDPF STGKEPEDPN SSRSHVKHEM IEEEKSDDDD EHADYEHADY YYSRFANYLT GEEREEIFSL VSLQPGNPVF VTVLQAPQIH RKGLLIVPSG FAADHLDSRS QEILLMRPNK KEKWYVKYYH ASTTRGFNCQ RWIKFIRENR LREGYICIFE LMKGARRVTM TVHVIGKVDD RFVLLG // ID I1R7U1_ORYGL Unreviewed; 899 AA. AC I1R7U1; DT 13-JUN-2012, integrated into UniProtKB/TrEMBL. DT 13-JUN-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza glaberrima (African rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA12G0159700.1, ECO:0000313|Proteomes:UP000007306}; RN [1] {ECO:0000313|EnsemblPlants:ORGLA12G0159700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 96717 {ECO:0000313|EnsemblPlants:ORGLA12G0159700.1}; RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L., RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K., RA Zuccolo A.; RT "The complete genome of Oryza glaberrima."; RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:ORGLA12G0159700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4538.ORGLA12G0159700.1; -. DR EnsemblPlants; ORGLA12G0159700.1; ORGLA12G0159700.1; ORGLA12G0159700. DR Gramene; ORGLA12G0159700.1; ORGLA12G0159700.1; ORGLA12G0159700. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; GSKQPTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007306; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007306}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007306}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99824 MW; 1CA5E4AAE5245B75 CRC64; MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRSG DPSKQHPATL QYQQTHNLNS GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE LQQQQRQHVL QEQSNQEMQQ QLPSSDHRVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG NSYPPLHLHN NFHNFSNQEA SNLLSLPRSS QLMASDGWPS KRLALESAVH PEAPSMHPKI EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASVAPLDY // ID J3KWA4_ORYBR Unreviewed; 324 AA. AC J3KWA4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G12600.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G12600.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G12600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G12600.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G12600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB01G12600.1; OB01G12600.1; OB01G12600. DR Gramene; OB01G12600.1; OB01G12600.1; OB01G12600. DR eggNOG; ENOG410JSZ2; Eukaryota. DR eggNOG; ENOG41108C9; LUCA. DR OMA; CIDDNTS; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 107 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 163 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 107 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 163 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 36280 MW; 1FFAB2F58430BEEC CRC64; MEQEGMVVSC NSGGSSSTES KPEDLVAMEE DEFQDLGGGH QAVELRVRPS SRYKGVVPQP NGRWGAQIYE RHSRVWLGTF PDEEAAARAY DVAALRFRGR EAVTNRVTPE GASAGVLAFL AAHSKAEIVD MLRKHTYDDE LQQGLRRGAR AQPTPRWARE PLFEKAVTPS DVGKLNRLVV PKQQAEKHFP FPLRRSSDAA AAATGKGVLL NFEDGDGKVW RFRYSYWNSS QSYVLTKGWS RFVREKGLRP GDTVAFSQSA WGTDKHLLID CKKMQRNQET HAIADDEARV VKLFGVDIAG DKGVPQRICD SQKLQTVWDS FWQK // ID J3KWA5_ORYBR Unreviewed; 271 AA. AC J3KWA5; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G12610.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G12610.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G12610.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G12610.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G12610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB01G12610.1; OB01G12610.1; OB01G12610. DR Gramene; OB01G12610.1; OB01G12610.1; OB01G12610. DR OMA; CTAANSE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 193 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 193 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 28833 MW; 14FFFD9D3F8599B9 CRC64; MGVDTISSSS SDSSGASTAT TESGGGAVQL LSVVEPAAAV DALPVVVGGD SSTVDDVVTS KPAAAQQSSR YKGPTPSWAR EPLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLRRSPDSAA AATGKGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKGLRAG DTIVFSRSAY GPEKLLFIDC KKNKTAAAAA TTTTCTAANS EKPSEARVVR LFGVDIAGGE GRKRERTLEM AAALERGQEA FLLKRQCVVH QRSPALGALL L // ID J3KY14_ORYBR Unreviewed; 489 AA. AC J3KY14; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G18700.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G18700.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G18700.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G18700.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G18700.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB01G18700.1; OB01G18700.1; OB01G18700. DR Gramene; OB01G18700.1; OB01G18700.1; OB01G18700. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 432 480 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 489 AA; 55296 MW; B6E3A6C9A2E85D3D CRC64; MEQKIALVNQ RLALLDSSSS SSGSDKDDEF EPGVRSCIEC FHTSSDCCWI SLSHKMLRPK EVYSEQRTIP AAPRTCNTQN TSNDLTKTTK VSVKGQNKYL SAEECCGSAM ERAQEVQAKL PAEHPSFVKH MLQSHVVRGF WLGLPADFCN KHLPKHDTGI VLEDEDGTNH DTTYLSSKQG LSAGWRGFAV NHDIKVGDVV VFQLVRLTKF KVYILREKNF GTTDEALGFL SYDACKKRKI SKVTDNAKPK EDPKTTRVSS KVEITDNAKS KEDPKPIRIS SKVVRDDTQN LVSEAIDGIR FSDSEISFED VASFSNFNII VDSLVIDCKF LDHQRRTYYE LCCSQKSFLH KHLLRQLNLK LVVGVIMETI IIAEGIRACK VNTSSHEDFL IWKKTLESFQ LLGMNVVFLL KRVDDLLGLA AQPRDPSECD KYNEMKRERS RTGEKMKALE SKMSTLKDAL KKIDAEMEEM ESSLRKYDTA LQKIATAPW // ID J3KY28_ORYBR Unreviewed; 639 AA. AC J3KY28; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G18840.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G18840.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G18840.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G18840.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB01G18840.1; -. DR EnsemblPlants; OB01G18840.1; OB01G18840.1; OB01G18840. DR Gramene; OB01G18840.1; OB01G18840.1; OB01G18840. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 535 624 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 60 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 639 AA; 71041 MW; 4A5E95C3B541169A CRC64; MFQVPYKILC KVVNVELKAE TETDEVFAQI TLLPDPDQEN LPTLPDPPLT AHRRPVVHSF CKILTPSDTS THGGFSVLRR HANECLPPLD MSMATPTQEL ITKDLHRSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLIS GDAFVYLRSE TGEQHVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAI KTNSIFLVYY RPRLSQSQYI VSVNKYLAAS KIGFNVGMRF KMSFEGEDVP VKKFSGTIVG EGDLSPQWSG SEWKSLKVQW DEVTNVNGPE RVSPWEIEIC DATAPAINVP LQSSTKNKRL REPSETVDLQ SLEPAQEFWL SGMPQQHEKT GIGSSEPNCI SGHQVVWPGE HPGYGAVSSS SVCQNPLVLE SWLKDFNSSS KGVSPTLSEI SQKLFQVTSN EARVATWPTR SAHQAEEPTS KLSLNTAVCG YRTEEVAPNA SKVVEGKKEP SMFRLFGVDL MKCTSVSTTT DSDKSSVGAG ETSTKGTGSH EDSGQLSAFS KVTKDHIAVD ESPREIQSHQ NYTGRTRIKV QMHGNAVGRA VDLANLDGYG QLMNELEELF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE FCQMVRKIVL YPIEDEKKIE PQPKLLPAAN QEQDHKTAL // ID J3L2R3_ORYBR Unreviewed; 729 AA. AC J3L2R3; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G35190.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G35190.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G35190.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G35190.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB01G35190.1; -. DR EnsemblPlants; OB01G35190.1; OB01G35190.1; OB01G35190. DR Gramene; OB01G35190.1; OB01G35190.1; OB01G35190. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR OMA; READPMW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 729 AA; 79924 MW; A909493A1932FC8A CRC64; MVGIDLNTVE EEEEEDEAEG GTGTPPAPAK AGGGVCLELW HACAGPVAPL PRKGSAVVYL PQGHLEHLGA GARPLATRPR CSARAQCVRD IDLTVCFRCA VQADAASDEV YAQVSLVVDN EEAKRRMRER EHGAGCDGEG EDAVKRPARI PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSLQRP SQELVAKDLH GTEWRFRHIY RGQPRRHLLT TGWSGFITKK KLISGDAVLF LRGEDGELRL GVRRAAQLKN VTPFPALHNQ ISSTTSLSEV AHAVAVKNIF HIYYNPSWTC RLSQSEFIIP YWKFMRSFSQ PFSVGMRFKL IYENEDASER RRTGIIIGSR EADPMWHGSK WKCLVVKWDD DVECLRPNGV SPWEIELSGS ASGSHLSTPH SKRLKPCFPQ VNSDVLLPNG SVSSDFAESA RFHKVLQGQE LLGLKNHGGT VNTASQATEA RNFQYTDERS CSINMSNNIL GVPRLGVRTP SGNPGFSYHC LGSGESQRFQ EVLQGQEVFR PYQGGILSDD CIRGSGFRQP DGNHASGAAL KWLAPQGCGQ HGITTPVLPQ ASSPSSVLMF PQTSSKMPGL EYIYGCLDRN ENSRRFKVGP TQDIGRTDET LRLWPRRMSG KALDGCMGTE KLNSPVSGAE HESNNKCLNT NGCKIFGISL TEKTQAGNEV DCGNASYHSR FQSLNSQMPK SLGSSCATVH EQRPVVGRVV DISAVNTMI // ID J3L346_ORYBR Unreviewed; 391 AA. AC J3L346; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G36520.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G36520.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G36520.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G36520.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G36520.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB01G36520.1; OB01G36520.1; OB01G36520. DR Gramene; OB01G36520.1; OB01G36520.1; OB01G36520. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 211 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 211 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 42763 MW; 74A4AD4AA16C753B CRC64; MAMCTHGHSR GQPAHITSTA KNKPILLSLS SYTLLMKPWS HHIPWAEPGS RSELTAPTNQ HLTLSLPPWR DVALSKVQHN TMNIFYNDPA TEKRKKKKKP KQNKTKVANH LPPSLHADMR FRGRDAVTNF RPLAEADPDA AAELRFLATR SKAEVVDMLR KHTYFDELAQ SKRALAASTP SAATTTACLA NDNLSSPRSP SAGAAARDHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPSAGGESKG VLLNFEDAAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDVVGFY RSATSTGDEG KLFIECKLVR TTSAALAAPA DQPAASPVKT VRLFGVDLLK TPAPEQQMAG CKRARDLATT TPPQAAAAAA FKKQCIELAL V // ID J3L3F6_ORYBR Unreviewed; 286 AA. AC J3L3F6; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G37620.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G37620.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G37620.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G37620.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G37620.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006644610.1; XM_006644547.2. DR STRING; 4533.OB01G37620.1; -. DR EnsemblPlants; OB01G37620.1; OB01G37620.1; OB01G37620. DR GeneID; 102710066; -. DR Gramene; OB01G37620.1; OB01G37620.1; OB01G37620. DR KEGG; obr:102710066; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR OMA; SMDMANP; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 170 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 170 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 286 AA; 31603 MW; 3597D984127B157D CRC64; MAGVTSKRRS SSASAPSSSS GDGAAVSDRP RGVTRKRRSG GRCPRPAAAL IPTAPRPHQA AGLRVILQKE LRYSDVSQLG RIVLPKKEAE AYLPILTSKD GKKSLCMHDL LNAQLWTFKY RYWPNNKSRM YVLENTGDYV RTHDLQLGDS IVIYKDDENN RFVIGAKKAG DQQAATVPQV DEHMSTLFPI FPIAQVDDYL SPMAPQVDIS AFVSHADENH EIFDGILNSL PEIPVANVRY SDFFDPFDDG MDMANTLNTN QSSNLHVTDE KSGHSLFPNP KSGPQM // ID J3L3M4_ORYBR Unreviewed; 401 AA. AC J3L3M4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G38300.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G38300.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G38300.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G38300.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G38300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006644645.1; XM_006644582.2. DR EnsemblPlants; OB01G38300.1; OB01G38300.1; OB01G38300. DR GeneID; 102719906; -. DR Gramene; OB01G38300.1; OB01G38300.1; OB01G38300. DR KEGG; obr:102719906; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 380 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 380 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 45088 MW; 542AB657225760BF CRC64; MPGAGGTTKS LWASAERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESSK AKSLKEASMA ATLEGPSGRT WLVVIHRTTE GTFFTSGWPK FVQDQALRDL EFVVFRYDGN THFTAMVFDR TACEREDLIG GGGDRPRKKR GRRPRDASRD TPRPKKDSVG KELVTYRASP SGQQLQILDS NWTTEPGSAA VKNEEDAEEP PLRALPAAPA QRASPRRVPE GALDVDGAAA RRGSVKTRSL QDDLALASIP PSIQRYKGYV SRRRPVTTAE RQRATEIAHA FRSPLPYCVI RMSTMHVYYS FMMRFPTGFS RQHLPRERTD VVLRDPGGKA WVVLYIPNTR DRLSRGWCAF ARGNCLEEGD YCVFELVAAA EFRVHIFRVV EPAVPAVRLR RVTVTCSRGT T // ID J3L3M6_ORYBR Unreviewed; 721 AA. AC J3L3M6; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G38320.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G38320.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G38320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G38320.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G38320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006646276.1; XM_006646213.2. DR EnsemblPlants; OB01G38320.1; OB01G38320.1; OB01G38320. DR GeneID; 102720941; -. DR Gramene; OB01G38320.1; OB01G38320.1; OB01G38320. DR KEGG; obr:102720941; -. DR eggNOG; ENOG410JVSD; Eukaryota. DR eggNOG; ENOG41105MW; LUCA. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 612 653 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 721 AA; 82480 MW; D21D7459029468F5 CRC64; MAGVRRHHFI KVMVGEFARR LEIPQDFLIH IPEVASSTSD TSLPSSAKGT LQNSEGKSWP VELERLDRRV FLTTGWAKFV EDTSLRAYEF LLFRYDENMH FMVLPFGLNA CEKVIQSSGS PEGKLPGDIF CCSKRGRDGD KLTEATYSLT PSHSQVVTLQ RSAQGHEHIS SQSFPDQHEV CGSKDGLDEH LSLKGAIEDD KTNTVAEVMR TLDVDKVTVE LFCAMLIFYK WNVDAVAEDL YICRGKPQIQ NVFLKNKLLF QFDIVKRKLQ NFFLPDDYCS SPILESEKRS LEEPKLSNQP LQCDSTAVKC RLIDEHDLCN FSQNKRRKRG SFCSHETPRR SPRLARQNNS RDNAKDTSKE RSEEQQPSPA STIDQAEGIA EQAWLCHDKM VNGSLFQDSE KVNPVHGDVG LCEEPQHSQG ENEGNLDQVN NKETGEEQTE RNAVDTSESF TRRGCIESLP ASCEVPECSK INELCFTWMP DEHVNSLEKV LLDIQRDNFM KTISHVQGII RNHPIDILTA DVITAVVQKE ILKWDYCLKD RDAQRIVNAL LEHAKKIKDM HNFNSEMRKE EFSTKLQIQL KWQLKELETA YTSLELDYKK ATIDDNIAFS ILHEQKKKLQ NLKGEITGQQ QSLEMKKDEM QKLAHQIADY EIVFQKSLME RLRIKEVMKS YEQTLAEVNV RLTSAEVGSI DVEALVKAEM DNMTKEIEMS KESVLNITFK K // ID J3L459_ORYBR Unreviewed; 634 AA. AC J3L459; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G40150.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G40150.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G40150.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G40150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB01G40150.1; -. DR EnsemblPlants; OB01G40150.1; OB01G40150.1; OB01G40150. DR Gramene; OB01G40150.1; OB01G40150.1; OB01G40150. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 634 AA; 69212 MW; 322F56B862A74460 CRC64; MTVSTGSASW LTLATRQGPT QTSVIGQSPR TTRSGGRRSL LRTADAATDE VYARLALVAE GEVFERNSHG GGSQREDDME DGDEERKSGM LHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GTKWRFRHIY RGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EALFKAFSSD SSKMRTLLSV AESLKHGSVF HICYNPRSAS EFIVPYWKFM KSFNHPVCIG MRFKFQFESE DVNERHAGMI AGVSEVDPIR WPGSKWQSLL VRWEGATDCN SQNRVSPWDI EIVGGSVSVA QSVSASSSKR TKLCPQGNLD TPSLYGNGRP DSVETEKFPR VLQGQELMGS RTHRVTCSPQ PIDITKSKSF DAWRFLTDTR SCMLGSSTSR LPVSCSGFTQ QSVGFSESIG FPEVLQGQES SQGVPPLQGM MPDAYSAKSR HELKNHMYTP AAMSGLSAAN QGYCLSLLST GPPSPPSSLV LYQTGVPQLE LASKNKDKSG NGSQPALPLH KLPGETCWEQ LEIGNASTPG NAAKSGHGGR EVGRTSCRLF GFSLTEKIVP TDKGGEKEGN YEADCQNPRM LDLFGYNCTT SGALHALCAA PLGI // ID J3L6W5_ORYBR Unreviewed; 627 AA. AC J3L6W5; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G49710.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G49710.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G49710.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G49710.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G49710.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB01G49710.1; OB01G49710.1; OB01G49710. DR Gramene; OB01G49710.1; OB01G49710.1; OB01G49710. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 530 625 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 530 625 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 627 AA; 70129 MW; 86ED6D26D269D2E1 CRC64; MVELIRVIKV EQEEGIADSH GEEKDEKGDG HEEKAEKVRR RRKRVYDPQR KKACVDCTKR CIRVHGRASS DEKSRPTPTL PSFFKIMVGY FSENMDIPLP FARTISDLTG SNVYLEDTYG LRWRVRLCLQ NGVLSFGHGW KNFVLDHDIS VGEFLVFRQI ARSVFTVQIF ALSACERIHL CERNNRQSRK RKPRRKTGHS ANQMVKASNK CVDKRRKKQR TEQRCDLGKS QPDMPVHVSI DSGSELKCSE SSVKELGVAA DESHEAVKVA ARETDSCAIE CNATVMSDDQ ESARAHQDMP MQLYCELGLQ DGNGETRNCE NSSILENAEL RTPLAMMDLN EVSIDDIFLS ADIYEFDSDF CSPEAFSVEL NTQVLANNGR GSGDCFGMPE TSTCLENKQM SDVPRTRADA GSVALHGIDI NALPRNELSE TAGQDSTCPD IDAAPDDCKK DKDIMPSEGN QVAQKADSSA RKDIIQDGPR QIAAEIMPSI PKTCGITDVR ENSLQLGNNS KGRERGSTKS CVVLGVAANN KKFCITVPPT DQTWLELPRR LPVLPRTKKQ ARKILILKDP CMRLWPVLYQ CTPKFNGFIA GWADISRENN LHEGDTCEFE LCSNSELSFQ VLVPDLQ // ID J3L706_ORYBR Unreviewed; 731 AA. AC J3L706; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G50120.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G50120.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G50120.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G50120.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G50120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB01G50120.1; -. DR EnsemblPlants; OB01G50120.1; OB01G50120.1; OB01G50120. DR Gramene; OB01G50120.1; OB01G50120.1; OB01G50120. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 528 630 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 528 630 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 731 AA; 76680 MW; 9A64CCBD74ABD293 CRC64; MDASAGSSAP HSQGNAGRQG GGGGRGKAPA AEIRGAEARD DFLFADDTFP SLPDFPCLSS PTSSSFSSSS SSNSSSAFTT AAGGGGGGDG FDELADIDQL LDLASLSSVP WEAEPLFPDD VGMMIEDAIS GQPHQVDCTG EAKAMLEAAG AEDAGGDACM GIEAADDLPA FFMEWLTSNR EYISADDLRS IRLRRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLQK KRPRTAMDDA AXXGTGQLPS PGANPGYEFP SGGGQEMGSA AATSWMPYQA FTPPAAYGGE AMYPGGAGPY PFQQSCSTSS VVVNSQPFSP PAAAAPAADM HASSGGNMAW PQQFAPFPGS STGSYTMPSV VPQPFTTGFV GQYSGGHAMC SQRLAGVEPS ATKEARKKRM ARQRRLSCLQ QQRSQQINLS QIQISGHPQE PSPRAAHSAP VTPSSGGCRS WPGIWPPAGQ VIQNPLSNKP NNNPSTSKQQ KPSPEKPKPA VSQPAAAVGA QQESPQRSAA SEKRQAATKT DKNLRFLLQK VLKQSDVGSL GRIVLPKKEA EVHLPELKTR DGISIPMEDI GTSQVWNMRY RFWPNNKSRM YLLENTGDFV RSNELQEGDF IVIYSDMKSG KYLIRGVKVR RATQLEQGNN NSSGAVGKHK HGSPEKPGVS NTKAAGAVPG GDDDNDDSVD TAAAGKPDGG CKGGGKSPHG GARRSRQEAA AAASMSQMAP AMADALKLLI I // ID J3L7F2_ORYBR Unreviewed; 762 AA. AC J3L7F2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G51580.1}; RN [1] {ECO:0000313|EnsemblPlants:OB01G51580.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G51580.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB01G51580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB01G51580.1; OB01G51580.1; OB01G51580. DR Gramene; OB01G51580.1; OB01G51580.1; OB01G51580. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006038; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 646 739 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 83 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 762 AA; 85674 MW; E8C077C1EB7DEC47 CRC64; MGRGKWGEKK HETGCSFGLP VPWTSTSLAT KYLCTSTVLA EQDTDEVYAQ IMLMPEPEQN EMAVEKTTPT SGPVQARPPV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT QELVAKDLHG MDWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQLSN VPSSVISSQS MHLGVLATAW HAINTKSMFT VYYKPRTSPS EFIIPYDQYM ESAKNNYSVG MRFRMRFEGE EAPEQRFTGT IIGSENLDTM WPDSSWRSLK VRWDEPSTIP RPDRVSPWKI EPASSPPVNP LPLSRVKRSR PNAPPASPES PILTKEAATK VDIDSAQAQR SQNNMVLQGQ EQMTLRNNLT DSNDPDAAAP KPMMWSPSPN GAKPHPLSFQ QRPPMDSWMQ LGRRENDFKD PRSGSQSFGD SSGFFVQNFD EAPNRLSSFK NQFQDQGSAR HFSDPYFFVS PQPSLTVESS TQMHTDSKEL HFWNGQSTVY NSRDQPQNFR FEQNSSSWLN QSFSRPEQPR VIRPHASIAP VELEKTGEGS GFKIFGFKVD TTNAPNNHLS SPMAATHEPM IQTPSSLNQL QSAQTDCIPE VSVSTAGTAT ENEKSAQQAQ QSSKDVQSKS QGASTRSCTK VHKQGVALGR SVDLSKFSNY DELKAELDKM FEFEGELVSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV RKIYIYTKEE VQKMNSKSNT PRKEDSTENE KSHLPVLHKS DN // ID J3L9I4_ORYBR Unreviewed; 1135 AA. AC J3L9I4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G13010.1}; RN [1] {ECO:0000313|EnsemblPlants:OB02G13010.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G13010.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB02G13010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB02G13010.1; -. DR EnsemblPlants; OB02G13010.1; OB02G13010.1; OB02G13010. DR Gramene; OB02G13010.1; OB02G13010.1; OB02G13010. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000006038; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1002 1086 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 588 619 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1135 AA; 126179 MW; 333ADFF499948BB3 CRC64; MATTKQTPAS STATAAASAV PPRGPCEGER KSPAINSELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKDVDAHV PSYPNLPSKL ICLLHGVILH ADPDTDEVYA QMTLQPVNTY GKEALQLSEL ALKQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELQARDIHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVIVVR DEKHQLLLGI RRANRQPTNI SSSVLSSDSM HIGVLAAAAH AAANSSPFTI FYNPRASPTE FVIPFAKYQK ALYSNQISLG MRFRMMFETE ELGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESAAG ERRNRVSIWE IEPVAAPFFL CPQPYFGVKR PRQLDDESEM ENLFKRAMPW LGEEVCIKDA QNQNTTAPGL SLVQWMNMNR QQSSSLANTA AQSEYLQALG NPAMQNLAAD DLARQLYVQN NLLQQNCIQF NSPKLPQQMQ TMNDLSKAAI PLNQLGAIIN PQDQKQDAVS HQRQQNSIQV IPLSQAQSNL VQAQVIVQNQ MQQQKPSPAQ NQQRINSQSL LLPHQQQDQN LQLQQQLLLQ QKQQLQQQQQ QQHNQQQLNK SLGQLVNLAS QQSKLFDEEL QLQILQKLQQ QSLMAQSTAT LSQPPLIQEQ QKLLIDMQKQ LSNSHPLAQQ QMIPQQESKP LLQATPLLPT VQQEQQQKLL QKQVSLADVS EVAFQPISST NVIPKTGGAM IISGAAQSVV TEEMPSCSTS PSTANGNHLA QSTKNRHCIN TERLPPSTAP MLIPTSIDAV TATPTMTKEL PKLNNNVKQS VVNSKLPNVV PGPQNCMNNS LQTDNLETSS SATSLCPSRT DGLMHQGFPS SNFNQHQMFK DTLPDVQIEG VDPTTSGLFG INNDNPLGFP IETEDLLINA LDSVKYPNHI STDVENNYPM QKDALQEIST SMVSQSFGQS DMAFNSIDSA INDGAFLNKN SWHTAPPLQR MRTFTKVYKR GAVGRSIDIG RYSGYEELKH ALARMFGIEG QLEDRQRIGW KLVYKDHEDD ILLLGDDPWE EFVNCVRCIR ILSPQEVQQM SLDGDLGSNV LPNQACSSSD GVNGWRPRCD QNSGNPSIGP YDQFE // ID J3L9V4_ORYBR Unreviewed; 916 AA. AC J3L9V4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G14210.1}; RN [1] {ECO:0000313|EnsemblPlants:OB02G14210.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G14210.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB02G14210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006646917.1; XM_006646854.2. DR STRING; 4533.OB02G14210.1; -. DR EnsemblPlants; OB02G14210.1; OB02G14210.1; OB02G14210. DR GeneID; 102720948; -. DR Gramene; OB02G14210.1; OB02G14210.1; OB02G14210. DR KEGG; obr:102720948; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006038; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 785 869 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 916 AA; 101644 MW; 642FF32C99C2380E CRC64; MKLSPSAGGS LPEQQPESPP EVAEEQKCLN SELWHACAGP LVSLPAVGSR VVYFPQGHSE QVAASTNKEM ESQIPNYPNL PPQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF LPAELGTASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIAKD LHGNEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNDSNQL LLGIRRANRP QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDPVRWQNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSPFPL RLKRPWPSGL PSLYGGKEDD LASSLMWLRD GQNSGFQSLN FGGLGMSPWM QPRLDSSLLG LQPDMYQTIA AAAALQNTTK QVSPALLQFQ QPQNIVGRSS LLSSQILQQA QPPFQQMYHQ NITDNTIQGH SQPEYLQQPL QHCQPFNEQK PQLQPQQQQQ ESHQQQPQCV QTPQHQQMQQ QKNLSSFQHV PNALSVFSQL SSTPQSAPST LQTVSAFSQQ HNFPDANIGC LSPSNVSSMH DTLRPFHSEA ASDLPGVPRI TPVPISDPWS SKRVAVESAI SSRPHAISSQ LENFDLTPST IPQNSTLAPL PGRECLVDQD GGSDPQNHFL FGVNIDSQSL LMQDGIPNLH NDNDSSTIPY STSNFLSPSQ NDYPLNQTLT TPGCLDEPEY GSCSDNADQV KRPPATFVKV YKSGTVGRLL DITRFSSYHE LRSEVGRLFG LEGQLEDPLR SGWQLVFVDR EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPGIEL FSTSARRLGN SCDNYMNRQE SRSLSTGIAS VGSVEF // ID J3LCJ3_ORYBR Unreviewed; 259 AA. AC J3LCJ3; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G23600.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G23600.1}; RN [1] {ECO:0000313|EnsemblPlants:OB02G23600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G23600.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB02G23600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006648609.1; XM_006648546.1. DR EnsemblPlants; OB02G23600.1; OB02G23600.1; OB02G23600. DR GeneID; 102721713; -. DR Gramene; OB02G23600.1; OB02G23600.1; OB02G23600. DR KEGG; obr:102721713; -. DR OMA; PFSGHAT; -. DR OrthoDB; EOG09360KAP; -. DR Proteomes; UP000006038; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 259 AA; 29065 MW; 63201CB8288553F0 CRC64; METSLPLPAS IDGVEVLDDM KVVATKYLFG KVLMPSDVFW VTEQLVIPDE HAGKLDIVTK VKDREGFFVI MAMDGMVPGK LWRFRYWNHN SIHRLTSGWG CYVKEKGLTA GDAISFFHGT TCGRLFISCN CKRDTRTGSS SATMSHPRNE GSMPVRSRNV TSKFGGAGAQ HSRRSPRHRR RSLVHPEQEP TDMPPILESM TLVPTPPPTV KRVRLFGVYI DAPPPLSFDD EPNQESNSHC GRAIDRDTDL KKRRQARGD // ID J3LDV0_ORYBR Unreviewed; 674 AA. AC J3LDV0; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G28170.1}; RN [1] {ECO:0000313|EnsemblPlants:OB02G28170.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G28170.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB02G28170.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006648743.1; XM_006648680.2. DR STRING; 4533.OB02G28170.1; -. DR EnsemblPlants; OB02G28170.1; OB02G28170.1; OB02G28170. DR GeneID; 102699936; -. DR Gramene; OB02G28170.1; OB02G28170.1; OB02G28170. DR KEGG; obr:102699936; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR KO; K14486; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006038; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 545 638 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 74727 MW; 26256AFA21365068 CRC64; MASSGAAAAG GGTGNSCDAL YRELWHACAG PLVTVPRRGE LVYYFPQGHM EQLEASTDQQ LDQHLPMFNL PSKILCKVVN VELRAETDSD EVYAQIMLHP ESDQNEPTKP QPDPHEPEKC NVHSFCKTLT ASDTSTHGGF SVLRRHAEEC LPPLDMTQNP PWQELVARDL HGNEWHFRHI FRGQPRRHLL TTGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRLMRQL NNMPSSVISS HSMHLGVLAT ASHAISTGTL FSVFYKPRTS QSEFVVSLNK YLEAKNSKIS VGMRFKMRFE GDEAPERRFS GTIIGVGSMP TSPWANSDWR SLKVQWDEPS VVPRPDRVSP WELEPLAVSN TQPLPQPPAR NKRARPPASN SIAPELPPVF GLWKSPAEST QGFSFSGLQR THELYPSSPN SIFSTSLNVG FSTKNESSAL TNKHFYWPMR ETRADSYSVS INKVPSEKKR EPSSAGCRLF GIEIGSAVEA TSPVPAVSGV GQDQPAASVD AESDQLSQPS HANKSDAPAA SSEPSPHETQ SRPVRSCTKV IMQGMAVGRA VDLTRLHGYD DLRCKLEEMF DIQGELAASL KKWKVVYTDD EDDMMLVGDD PWPEFCSMVK RIYIYTYEEA KQLIPKSKLP IIGDAKQNPN KQSPESDMPH SDLDSTTPVT DKDC // ID J3LEG2_ORYBR Unreviewed; 961 AA. AC J3LEG2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G30290.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G30290.1}; RN [1] {ECO:0000313|EnsemblPlants:OB02G30290.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G30290.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB02G30290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB02G30290.1; OB02G30290.1; OB02G30290. DR Gramene; OB02G30290.1; OB02G30290.1; OB02G30290. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000006038; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 254 347 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 845 907 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 254 347 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 845 907 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 961 AA; 108132 MW; 98EE585C3811C200 CRC64; MGFRCEEEDV GLAILFLEAN AECGGTGEPN IEPQRQAKLS LDKRDEPCLR DTGDQTGPQE LGQKQKKDEK RRCRDGMKKN APNDAGEGEE TSNRDKRRNR KAGSDAEERE KKMFNGGNKA KSRKVSSPFF EKERKKKMLG MSSHQNGEQK KSNDDSDKKR TVPKVRHNDI MEMTIKEKKQ DVSFVQPEER TSQTFSTNNK GKKRKALSTL FKREQKMREA SSDDKKETKK TRIVAKGNDR KVCSDGKKKK RKASFTFLKF MCNKFKELLF IPPAVASSFK DLINHHVYLE DSEGMSSKIK LSVVDGSLAF YEGWNKFVSE HFITWGDFLL FEYTAESTFS VRVFGKDSCE RLHFNVKSGR KGTMKKRNER YTLSDDLESH YDGQDSEDVH DAPHVSGESL RNKEPKITVA TEIRTSNLAA KSINAASETQ DSERVESGIG HGSVGALDNM DRDVGNIVCK TRSDSVLFIP ETTKRSEVIM IIDESSSTQE NEDTMTQMTS SEDSETRHMT INAKKDPERV PDGVWCKSSV ALNNKTENVF LGECKNKIVS PTCSTEKTNG SETIPITDVI PLTWGNVDTF SHLKEGGSTR EPELAAATPT KCTEIHDSDE DLRQRHQWST VQVKSAIAMD RYSNNSDMDI SGNISRIYEA PGGTRCLEKW NKSIISDRAA LDDIEQPQVR PEELQKADKK LVDNCGAMGQ NSVDPWLESD VTDTCLKPIE NLLILDSRTE IDHFVNQKGA IVQLQTKTEP LKPTGSTGSI QGDKIPVCVN HILAQQSEEI PQQENGKFTS CVIPVALLVS EAKLLDLDDH SLQFRIPSTI QKWLELPKSL PITFRHKGRL DRRVVILKDP MKRLWPVFYH DHPIFVGFTS GWKAFAAAND LQSGDVCKLV KEPDEYEPAF QKIYMAQDWR LGAGTKKLFL LVATCNNSNS AAAGWTPTRL CESRRCRGRP GLAVPLHMCL D // ID J3LEZ8_ORYBR Unreviewed; 622 AA. AC J3LEZ8; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G32150.1}; RN [1] {ECO:0000313|EnsemblPlants:OB02G32150.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G32150.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB02G32150.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB02G32150.1; OB02G32150.1; OB02G32150. DR Gramene; OB02G32150.1; OB02G32150.1; OB02G32150. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006038; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 536 616 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 43 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 622 AA; 67798 MW; 2E6117329905D538 CRC64; MADPDTDEVF GRIRLVPFRA AEDGDVEDDG AAAGEEHEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVVAKDVHG VAWNFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RGDGGELHVG IRRAKRGFCA GGGGAEEASL PGWDQYGGLM RGNASPCAAA KGRGKVRAED VVEAARLASG GQAFEVVYYP RASTPEFCVR AAAVRAAMRV QWCPGMRFKM AFETEDSSRI SWFMGTVAGV QVADPIRWPQ SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SSMPAIHLSS FSPPRKKPRI PAYPEFPFEG QLLNPAFPPN PLAHGHHPHH HYHHNHPSFF PFPDVIAPAG IQGARHAQFG PSLSDLHLTH LQSSLMYPGL RRPDHVGPTP IPPRISTDLT MGGSQPPARD TVSCALSIGA KKPDDAKPPG LMLFGQRILT EQQQMSLSGS ASGTSPAAAG NSSLNWNTEK GANASEGSGS GVIQNSPTDN TSSERLQWRL QWFRENSHVS ELGLEPGQCK VFIESDTVGR NLDLSTVSSF EQLYGRLSEM FCIDSRELRS RVLYRGATGE VKHAGDEPFS EFIKLARRLT ILTDAGSDNL GS // ID J3LFX1_ORYBR Unreviewed; 406 AA. AC J3LFX1; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G35380.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G35380.1}; RN [1] {ECO:0000313|EnsemblPlants:OB02G35380.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G35380.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB02G35380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_015689086.1; XM_015833600.1. DR RefSeq; XP_015689087.1; XM_015833601.1. DR EnsemblPlants; OB02G35380.1; OB02G35380.1; OB02G35380. DR GeneID; 102715544; -. DR Gramene; OB02G35380.1; OB02G35380.1; OB02G35380. DR KEGG; obr:102715544; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006038; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 43488 MW; B8898815A878B131 CRC64; MEFTTSSRFS KEEDEEQDEP SRREIPFMTA TTTAAEAAPA PTSSSSSPAH AASASASASV SASGRSPPFR SEDGAGASGS GGGGGGGEAE AVEKEHMFDK VVTPSDVGKL NRLVIPKQYA EKYFPLDSAA NEKGLLLNFE DRAGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT VSFSRGVGEA ARHRLFIDWK RRADTRDQLR LPRGLPLPMP LTSHYAPWGL GGGGGFFVPP SPPATLYEHR LRQGLDFRTF NHPAAPMGRQ VLLFGSARIP PQAPLLARAP SPLHYTLQPS GVDGVRAAGS PVVLDSVPVI ESPTTTAKRV RLFGVNLDNP HGGGAGESSN HGNALSLQTT PAWMRRDPTL RLLELPPHGA ESSAASSPSS SSSSKRDAHS ALDLDL // ID J3LJD5_ORYBR Unreviewed; 310 AA. AC J3LJD5; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G11610.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G11610.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G11610.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G11610.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G11610.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_015690338.1; XM_015834852.1. DR RefSeq; XP_015690339.1; XM_015834853.1. DR RefSeq; XP_015690340.1; XM_015834854.1. DR EnsemblPlants; OB03G11610.1; OB03G11610.1; OB03G11610. DR GeneID; 102718995; -. DR Gramene; OB03G11610.1; OB03G11610.1; OB03G11610. DR KEGG; obr:102718995; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 33966 MW; 5D16B7D9D1EADCC7 CRC64; MEFITPIVRP SAAAAAGVGG GEHESSRGLP AEAVEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS ASNEKGLLLS FEDRTGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFGRGVG EAARGRLFID WRRRPDVVAA LAPPTHRFQF PSSIPFAPWT HHHGHGSAGA GSRFLLPPST SIYDHHHRRH SHAAVGYDGD AAATDSRQGL FYRPLQPHQQ HQHQHHPAVV LETVPVRIAA GHAEPSATPS KRVRLFGVNL DCANSEEDAG VGKTPLQLPS PPSSSSSSSG KARCSLNLDL // ID J3LKQ3_ORYBR Unreviewed; 235 AA. AC J3LKQ3; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G16290.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G16290.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G16290.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G16290.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G16290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006649518.1; XM_006649455.2. DR EnsemblPlants; OB03G16290.1; OB03G16290.1; OB03G16290. DR GeneID; 102714354; -. DR Gramene; OB03G16290.1; OB03G16290.1; OB03G16290. DR KEGG; obr:102714354; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 235 AA; 26269 MW; 2656DEE944B4F335 CRC64; MAIDKGMSPY EAARERTVEE NKRKMEALNL RHLSAALALA PKTPSPMKQK RRRIVEAAAV APSPPRRSRR LANLPEVKYA EGASNGSERM KRSPRKPIDS IYLATRGSIS MEARLEAARK AEELESQLDP EFPSFVKPML HSHVVRGFWL GLPRHFCETY LPKRDAIVTL VDEKDEEFDT NYLAYKNGLS GGWAGFALDH GLLDGDATVF QLIKPTTFKV HIIRATVGDG NEATK // ID J3LQV4_ORYBR Unreviewed; 560 AA. AC J3LQV4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34300.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34300.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34300.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34300.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34300.1; OB03G34300.1; OB03G34300. DR Gramene; OB03G34300.1; OB03G34300.1; OB03G34300. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR OMA; CDDTAES; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 459 557 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 459 557 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 560 AA; 62550 MW; D8EBE36C9EE87FF6 CRC64; MAGSGSRMKR SCACCQGYLE HLDGKMSCFL RRMTADSRHC MILPDRFVNH FGGDISGTIK LQSPNGILYV VEVIECKNKT VLKCGWQAFV DAHHIQENDS LLFRHIENSR FEVLILDSND CEKVFSCSGI KNTCSIQGKN VDPASISGSS CDDTAESSES EGFARYQNGS FSHRRKTAKL ASSSSSPEDS GKPFVKLFLV KFCTGEDSSS DSGHEYVDSG DLETSQEPYV LCRRSHLSKV QEEKVDALIE EIHPEITVFV AIMRKSNVQL PAPCLVISSG YAAVHFPHTS GTVTLQSPCR SKKWHVMFHK RRGSRLNILR GHWADFVKDN RVQEQDICVF VPMKGSSSFT FMVHLLRAAA TYPKGGTVID RIGSSLGIKD LKSASDISIK EEPIEEENVF SKSNRDGVSD ESQESEDSEG PADPPYILPC KNRLSRLQKK IVQERVRSIQ SRVPIYVAIM KKSNVGLIAS RSQLELGARY AAAVDLPGMG RRAVVLQRSG QRWATVMQIR SGSRRLLLGG WHSFVRDNRL RVGDICLLEL KKDERKLTMA VHICRKEQFF // ID J3LQV5_ORYBR Unreviewed; 128 AA. AC J3LQV5; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34310.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34310.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34310.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34310.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34310.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34310.1; OB03G34310.1; OB03G34310. DR Gramene; OB03G34310.1; OB03G34310.1; OB03G34310. DR OMA; WARFARD; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 128 AA; 14446 MW; A0ACA0844C53F750 CRC64; MVKEEVRSIQ SKVPVYVAIM KKTNVGLTSS RCQLELGARY AAAVRLPDSR QSVVLQRRGE RWPAAMEAKS ASGRRFLVGG WHRFARDNRL RVGDVCLFEL RRKQQQGKLT MAVHVIFAAS TSSRCLID // ID J3LQV7_ORYBR Unreviewed; 466 AA. AC J3LQV7; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34330.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34330.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34330.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34330.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34330.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34330.1; OB03G34330.1; OB03G34330. DR Gramene; OB03G34330.1; OB03G34330.1; OB03G34330. DR OMA; PHESQTI; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 177 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 410 466 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 177 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 410 466 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 466 AA; 52609 MW; 03C21C80FD15EC23 CRC64; MAGQGSKMKR SFDCCKRYVD HLNGKMKCFH IQMRANSGHS IIIPNKFLEQ FGGKISTTIE LKSPKGIVYV VKVLILDSDG CEKAFPRAGT RKTCRAPERN ADPIDISGST HDGTMESSES EECTESSSSE HESSHELDDP QTTLAPILSY GTSLSEAQEE EVAMLIRDIQ PEIPVYVAVM KHSNVNSPHA SLVIAKLYAS TYFPNTSQTI TLQRQGKNKK WRPRYYIRKD RPGHILYGRW INFVRDNHIK EGDICIFHAM KFTREEFGAT VHLLRARKSH SFGEFCTNPK IVDSKYVGTR PKMTGSSVKE EPYDGQCNKG QGKRQGPQNF DDSRGSSKPY ILSHRDSLTD EQVGKVEEVA HSIQPGVPVY VSIMKRSSVG TDGLYTLKLG KQFSTRHLPP QGDHQVLTLL MEGEGHAWRV RMCSRSGDAQ TLTTGWREFV RDKHLHLPAD EQREQAHHDR PRHSSR // ID J3LQW0_ORYBR Unreviewed; 533 AA. AC J3LQW0; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34360.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34360.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34360.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34360.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34360.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34360.1; OB03G34360.1; OB03G34360. DR Gramene; OB03G34360.1; OB03G34360.1; OB03G34360. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR OMA; FTGRKFR; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 435 533 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 435 533 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 533 AA; 60351 MW; 984915EB61E6F61F CRC64; MYITVSSFGA SSLHHHQFVE LVCKGKMRAD FEHSMSVSRM IGRRVQDDAR SNPSRQAISS ASKASWNIIP NKFLNQFGGK ISRTIELESP KGNVYVVKVT KHMNKTVLQC GREAFADAHQ IEESDSLLFR HIENSRFEVT FLDSDGCEKV FSCAGKKMAS SAREINVDHI DISSSSQDDS TQSSGGERRR DNLRGKTAKL AASSSSGESG EEATESSTSE HELFDDLVDP QTPAVPGYIL SRGTSLSAAQ EEKIDMLVED IRPEVPLYVT TIKHSNVNSH HPTLVIAKNY ASEHFRRTSQ TITLKCQGKN KKWHPRFYIR KDQVGYILQG HWIDFVRNHL EEGDICVFHL RKFTGRKFRA TVHLLCETKS HSLGTLRASP KRIDSRDCRM RPRVTGARRA SSKHYVLSDR ASLTAEQMTK VEEIVHSIQS DVPIYVSIMS KINVGTDGLY IIAICRNYAS KYLPREHQMV TLRRGGKSWQ VWFRVNKHDL RMLSRGWKKF AGDNGLQVVD ACLFELLSVD ENSYTMNVHI IRK // ID J3LQW1_ORYBR Unreviewed; 449 AA. AC J3LQW1; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34370.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34370.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34370.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34370.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34370.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34370.1; OB03G34370.1; OB03G34370. DR Gramene; OB03G34370.1; OB03G34370.1; OB03G34370. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR OMA; GRETREI; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 394 449 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 394 449 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 449 AA; 52030 MW; FA3BDF1C078F5EBA CRC64; MRKPNTRSTT QRNEHYHCNG IDGQEKYFFK VMIYDFRQTM IIPDKFAHHF KGVTAKIVKL ESRSGYTFDV QITKKLNRLV LGSGWESFAS AHDLKMGDFL VFKYNGNLLL QVLIFDPSGC EKAAPCSMKN AIGHFGQRWG EPIDTSSFQD HQQKPPQSGN EHWMQKDRSC KGNKIGNVRS SSTPSKYSGC ILPRGICLPE FQEKKMKEMI QAIQSKTPMY GSVMTKSSVF GSHCALEISR RYDAYLPYSG QELVLRHHEK SWEVRFCRYK NKSIKFTQGW KRFVQENNLK IGDLCLFQTL KKNYSMNVHI IRTIRSSSTL SNVSGCVLPR GTCLPKTQEK KMKEKIQAIH SKTPMFGAVM KKCSVSCALE ISKQYDDAYL PYNAQELMLR HCRQSWKIRF RRYGNNTRKF SQGWKKFVLD NNLQMGDLCL FEILTKINYT INVHIIRKC // ID J3LQW2_ORYBR Unreviewed; 298 AA. AC J3LQW2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34380.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34380.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34380.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34380.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34380.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34380.1; OB03G34380.1; OB03G34380. DR Gramene; OB03G34380.1; OB03G34380.1; OB03G34380. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR OMA; WWGNSAG; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 233 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 233 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 34099 MW; 3D74D550363ECDE8 CRC64; MRRPGARCKE EHAHFNRNHV DGPDMNFFKV MIGHFRERMT IPDEFQQYFR GKIPRTIKLR SRSGCTFDAE VTKNLSKLSL QSGWKAFATA HDLQMGDFLV FTYEEGISEL KFLIFGPSGC EKVPSCSLHD HSPSNSQTQW GSSKQENNIA NIEDAALQGD DFQVHPLPGC IIPKRTRLTD AQKQQLENKV QAIHSEIPIY GCILRKTSIQ GKPQTVDICP EYADVYLPSN KRLNIRLQRH GKNWDVQCRT NKIGSKRLSK GWICFARDNN LHVGDICLFE LLNNKECTTM NVHVIPEK // ID J3LQW3_ORYBR Unreviewed; 294 AA. AC J3LQW3; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34390.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34390.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34390.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34390.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34390.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34390.1; OB03G34390.1; OB03G34390. DR Gramene; OB03G34390.1; OB03G34390.1; OB03G34390. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR OMA; CEKLPAC; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 33483 MW; B0A196F35C583112 CRC64; MQGGSLQRGA YFDCNRTNGE DKHFFKIMVG DFAESMTIPN EFLRNFGGKI PKSVKLETRN GLTFDVQVAK DLGRVFLQSG WTSYVSAHDL KTGDFLVFKY SGHSQLKTLI FDPNGCEKVC SYLVKKNAAH SQQNENKKRK QRENSNKLSR SPMKPSEDDL VPGCILPRRT HLDRLQRKIL TEKVKALHSE TPIYGYVMNN SSIRGIPCTV VISANYGDLY LPFEDGTVVL QHNGKCWNVR CCVTTQNSKR LLAGWKKFAG DNKLHPGDIC LFQLLENEKK YVMNVHIIRK KMKN // ID J3LQW4_ORYBR Unreviewed; 223 AA. AC J3LQW4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G34400.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G34400.1}; RN [1] {ECO:0000313|EnsemblPlants:OB03G34400.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G34400.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB03G34400.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB03G34400.1; OB03G34400.1; OB03G34400. DR Gramene; OB03G34400.1; OB03G34400.1; OB03G34400. DR OMA; RNQDECE; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000006038; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 223 AA; 24662 MW; 3E879CB0ED548824 CRC64; MGTLKMGKNC SVCKEWQEHC YWSHMADDSK HFLKHMAGDF TESMTVPARF ADNFNGHISE EVNLRPPSGK TWSIGVASSG AGEVVLQSGW KEFVDGNSVQ EGDCLLFRYS GVSSFDVLIF DPSGCEKASP HFAESHGGAG RNQDECEAKE DDDDEDVVKG VVEGGYYFGR NGRVGEYNLR EEDKEEISRF PVPLHPGNPV FVHVIHAAHI RTSRYSILAS DSP // ID J3LWV7_ORYBR Unreviewed; 376 AA. AC J3LWV7; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G16320.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G16320.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G16320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G16320.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G16320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB04G16320.1; OB04G16320.1; OB04G16320. DR Gramene; OB04G16320.1; OB04G16320.1; OB04G16320. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR OMA; DKFVQHY; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 88 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 324 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 88 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 324 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 376 AA; 42654 MW; 719E2F50139689B0 CRC64; MAVILSPLSK FWRIELQKDQ LGMIFRGGWX EYAAAHGLGV GWFVVLRHEG GGVLTAKVFD TTCCLKEFGD STPVLTTING RARGTSCKPQ FLSILLPDFM DKMRIPDKFV QHYITEEHLN SNMAYISSPP GKFWRIGLEK DRSGVFFCGG WLQFLSFHGV SQGDVLLLRY RGNLVFKVEF FGPNGCRKDL KTDDTRVQQY AGIHQDEPFR RRKCIEKKRK IDEDNGNQHG TASSSGRKDS IKKRRTDGSE RERRKKSQSI YEIGPPSWIK KKINEYILER CLVSLALTFC SSIGFAKKST ITLTMEMEMT SRGGGGGGNS SRRRSWEVAG RRYSHACYLL GDGWKRFCHD NGLKVGDVCV FTVVHTTLWH VGIERC // ID J3LY63_ORYBR Unreviewed; 673 AA. AC J3LY63; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G20880.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G20880.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G20880.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G20880.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006653437.1; XM_006653374.2. DR RefSeq; XP_015692249.1; XM_015836763.1. DR STRING; 4533.OB04G20880.1; -. DR EnsemblPlants; OB04G20880.1; OB04G20880.1; OB04G20880. DR GeneID; 102705067; -. DR Gramene; OB04G20880.1; OB04G20880.1; OB04G20880. DR KEGG; obr:102705067; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 639 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 74757 MW; 5FF7243161E1634C CRC64; MAAAMEMAAN PGGGSGSCSD ALFRELWHAC AGPLVTVPKR GERVYYFPQG HMEQLEASTN QQLDQYLPMF NLPSKILCSV VNVELRAETD SDEVYAQIML HPEADQSELT SPDPEPQELE KCTAHSFCKT LTASDTSTHG GFSVLRRHAE ECLPQLDMSQ NPPCQELVAK DLHGTEWHFR HIFRGQPRRH LLTTGWSVFV SSKRLVAGDA FIFLRDENGE LRVGVRRLMR QVNNMPSSVI SSHSMHLGVL ATASHAISTR TLFSVFYKPR TSRSEFVVSV NKYLEAKKQN LSVGMRFKMR FEGDEAPERR FSGTIIGIGS VPAMSTSPWA DSDWKSLKVQ WDEPSSIVRP DRISPWELEP LDTTNPQPPQ PPLRNKRARP PASPSVVSEL LPSFGLWKSP SEAAQTLSFS EPHRTREIFP SIPASIFSAS SNAEFNSKKE PSMLNNQFYW SARDSRADSF AASTNKVRVE RKQEPTTVGC RLFGIEISSA VELLPAATVS GVGYDQTVVS GDVDSDQISQ PSNGNKSDAP VTSSEHSPLE SLSRQVRSCT KVIMQGMAVG RAVDLTKLGN YGDLRRKCEE MFDIQGELCP SLKRWQIVYT DDENDMMLVG DDPWDEFCSM VKRIYIYSYE EANLLAPKSK LPNIGDTIQF SGVNSSPESV GLDSHASVTN KDC // ID J3LZM4_ORYBR Unreviewed; 629 AA. AC J3LZM4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G25990.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G25990.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G25990.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G25990.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB04G25990.1; OB04G25990.1; OB04G25990. DR Gramene; OB04G25990.1; OB04G25990.1; OB04G25990. DR eggNOG; ENOG410JQUD; Eukaryota. DR eggNOG; ENOG410XYC6; LUCA. DR OMA; DEPFCAF; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 96 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 629 AA; 68602 MW; 208520D17F2F86B0 CRC64; MSSVPPVGAA VYYFPQGHAE QASEAVDLSS ARVPPLVPCR VVAVRFMADE ETDEVFARIR LAPLRPGDAV VDVGEAAAAG EGGRQQEEDR PQPASVPKTL TQSDANNGGG FSVPRFCAET IFPELNYRDE PPVQLIHAKD VHGEQWTFRH IYRGTPRRHL LTTGWSPFVN KKQLLAGDCI VFMRDEGRNI HVGIRRAKRG FCGIGGDDEG LSSLPAWDQF RGLVRGNATA GGESSPTKGK VPPENVLTAA TLATSGQPFE VLYYPRASTP EFCVRASAVR TALSVQWCPG MRFKMAFETE DSSRISWFMG TIAGVQAADP IRWPKSPWRL LQVTWDEPEL LQNVKRVCPW LVELVSSMPN LHLPSFSSPR KKPRIPPYAE FPPDAQLFNP AFPPNLMAHG HADHHHHLHH GFPFLPFPDG SAQPAGIQGA RHAQFASSFP DLYIGNLQPN LMLYSGIRLP PADQAAPRPP RIISTDLTIG SQLAPDEPTT SPSSSARKID NAKPTGFLLF GQAILTEQQI KNGNSGGRAS PGATRKRSLN WDAEKAPNGS EGSDSAGFSE GSPTTTKGQP PPHQHAVVEV AVFWRQQKPR IRVRAGARPV QGVRRVGSRR PEPRSHGSEL VRGAVRPTV // ID J3M0P9_ORYBR Unreviewed; 336 AA. AC J3M0P9; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G29740.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G29740.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G29740.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G29740.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G29740.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB04G29740.1; OB04G29740.1; OB04G29740. DR Gramene; OB04G29740.1; OB04G29740.1; OB04G29740. DR OMA; DFRNINA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 12 43 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 336 AA; 35666 MW; CECA42CF2FA4EE17 CRC64; MEFATTSSRF SKGEEEEEEG EQEMEMEQEQ DEEEDEVEAE AEASPREIPF MTAAAAATAS SSSPTSVSPS SAAASTSASG SPFRSSDGAG ASGSGGGGGG NDVEVIEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSAANEKGLL LSFEDRTGKL WRFRYSYWNS SQSYVMTKGW SRFGFDFRNV NSAVPARQLV FFGSPGIPPH PPLPPPPPPL HFTVQPSPVV TSGLPMVLDS VPHVNNPAAA AKRVRLFGVN LDNPHPDGGQ SSGHGQDANA LSLRMPGWQR PAPLRSQELP PHFSAGAAGA ESSAASSPSS SSSSKREAHS SLDLDL // ID J3M2D2_ORYBR Unreviewed; 949 AA. AC J3M2D2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G35570.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G35570.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G35570.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G35570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB04G35570.1; -. DR EnsemblPlants; OB04G35570.1; OB04G35570.1; OB04G35570. DR Gramene; OB04G35570.1; OB04G35570.1; OB04G35570. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR OMA; DYDPMRW; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 846 930 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 949 AA; 104878 MW; BBEDC6A50840D836 CRC64; MASSQEKAKS GVLRNAAALL DEMQLLGEAQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPKYPNLPSQ LLCQVHNTTL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GTYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRATRQQTT LSSSVLSTDS MHIGVLAAAA HAASSGNSFT IYYNPRTSPS PFVIPVARYN KATYMQPSVG MRFAMMFETE ESSKRRYTGT IVGISDYDPM RWPSSKWRNL QVEWDEHGYG ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVPGM EIGSGNISSF QRAQSNPYGN LQHIPAVGSE LAIMLLNQSG QNLGSPLSYQ QSSYSTIIQN VKQSYIPPLE ISNSASSMKQ GSMASDDAQH QFHMANMQNG DLENSEVQPV IDSISESKLN VTSRDPRNTD SYTSRSISEQ NSKGEPSGKT RRSKKGMSHK TISKKSDLSS APSWICDNQQ VGLDSKLVGC DEQVNCENIE DSSGGLTQGN FAGQPHGHQV EENGVLSPPK VESSKSPDGG KSVNSFPNQG CFSQFIDGLD WMTQPSYYQD NNVIHSADAS DNIFSSSADI PPTIIADTME TFQASCLSEC LPNSIQEFIS SPDLNSLTFL SPEMQNLEVQ LQHDGSNLSS TSNSFVQMSF SEESGNLSGL HMESTHRSMN TTSCSQPLST GCFDTGMYSK LPRLKESQIL PLPEIHTNSI ETSACSMDAT EYSLDRSAKP MKPPVRTYTK VQKQGSVGRS IDVTGFRNYH ELRSAIACMF GLQGKLEHPG SSEWKLVYVD YENDVLLVGD DPWEEFINCV RCIRILSPSE VQQMSENGMH VLNDCIQAA // ID J3M2I9_ORYBR Unreviewed; 829 AA. AC J3M2I9; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G36140.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G36140.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G36140.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G36140.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB04G36140.1; -. DR EnsemblPlants; OB04G36140.1; OB04G36140.1; OB04G36140. DR Gramene; OB04G36140.1; OB04G36140.1; OB04G36140. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 814 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 829 AA; 92180 MW; 437419248D184340 CRC64; MSSSSAASIG PPRPPPPPAP PEEGGWLEKK CLNSELWHAC AGPLVCLPTV GTRVVYFPQG HSEQVAASTN KEVEGHIPNY PNLPAQLICQ LHDVTMHADV ETDEVYAQMT LQPLNPQEQN DAYLPAEMGI MSKQPTNYFC KTLTASDTST HGGFSVPRRA AERVFPPLDF TQQPPAQELI ARDIHDIEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA SRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLSKYIKAVF HTRISVGMRF RMLFETEESS VRRYMGTITE VSDADPVRWP SSYWRSVKVG WDESTAGERP PRVSLWEIEP LTTFPMYPSL FPLRVKHPWY SGVASLHDDS NALMWLRGVA GEGGFQSLNF QSPGIGSWGQ QRLHPSLLST DHDQYQAVVA AAAAASQSGG YLKQQFLHLQ QPMQPPQEHC NLNPLLQQQI LQQASQQQII SPEAQNIQTM LSPSSMQQQL QQLQQMQQVQ NDQKQKIQPE QSYQVPSSAV LPSPTSIPSH LREKFGFSDP NANSSSFIPS SSSDNMLDSS FLQGGSKAVD LSRFNQPVAS EQQQQQQQQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK DGSVENKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVA DGSLSTIPSG STYLQNAMYG CLDDSSGLLQ NTGENDPTTR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK QGNDPRYLS // ID J3M2M9_ORYBR Unreviewed; 447 AA. AC J3M2M9; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G36540.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G36540.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G36540.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G36540.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G36540.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB04G36540.1; OB04G36540.1; OB04G36540. DR Gramene; OB04G36540.1; OB04G36540.1; OB04G36540. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR OMA; GFVKQHG; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 311 413 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 311 413 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 447 AA; 49075 MW; 32F11120018492F7 CRC64; MADSGRREDT EGGGGGGGGG SLGAGRDEVW RAPDVLALPP PTGLGALVQQ QPPHVGQNVV QHSHQYPVAA GLIRHPSPPT MPVQVGFPAY VPPQYTVVPT PAALPPQQQH QHRENFQNWV PSNHNVAALH APGAFQELRP MCSGSAFLHF GQNAASSNMF YQNTLPCSIN SSWPNNNNML RNPVYPSYHP HAAIDDHQAP PFHSNSHDTD QGFQTSFRMD QAFVPASSPF PPVSSSSHIL SSSQISNGPK NAKKAKKSDV KDTPISFRRS DMKIQKNDEL DQTPASEPPS LSQNSESLAV RFNCREYRVI LRKELTNSDV GNIGRIVMPK RDAEAHLPAL NQREGVMVKM DDFKIETTWN FKYRFWPNNK SRMYVLESTG GFVKHHGLTT GDILIIYKSS VSGEFVVRGE KAIKPNAVMP VVDCSCKNEL NNSEECGFAI SLQTKKT // ID J3M2Z0_ORYBR Unreviewed; 528 AA. AC J3M2Z0; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G37650.1}; RN [1] {ECO:0000313|EnsemblPlants:OB04G37650.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G37650.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB04G37650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB04G37650.1; OB04G37650.1; OB04G37650. DR Gramene; OB04G37650.1; OB04G37650.1; OB04G37650. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000006038; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 528 AA; 56748 MW; 042B4D960419E3D5 CRC64; MALPPAASPP PPPTPVDPIV WLACASPLSR LPVVGSQVYY FPAGHAQQCP TPLPLPAHPL FLCSLTALSL SADPTTGEPY ATISLLPLRP GTPPAAPASL PAPGVGSQRQ PPVFCYYPKQ LTQSDANNGG GFSVPRLCAE SIFPPLDFDD DPPVQILNMT DLQGKSWEFR HIFRGTPRRH LLTTGWSKFV NAKVLVAGDT VVFMRRPDLK LLVGVRRAPR FDADSRCNAR ARVPAQEIME AVRLASNDEP FTVTYYPRQG AGEFVVPRME VEKGLTSAFM PGMQVRIQIM ESEDTRRTAW LNGTINKVYY QQMWNGLEVD WDSSAASFFR TDRCVNPWQV QPVGFPPLPS GVNINPNTIS SAPICTEDSL LVPSPMLPPQ PPVSIQGARH NNPNAHADIP SSSTSVLTTQ ALFPTGLQNS VPPSLGGGSS SMVNPQNGSP SNNPVNTPPS DLPDGMKTIQ LCIPEKTIQL FGVKITSPVQ SDTNGGFSSA QVNQVPEGMD DETSAQEATD TTPTGSPTNG HNQDAARL // ID J3M877_ORYBR Unreviewed; 277 AA. AC J3M877; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G28010.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB05G28010.1}; RN [1] {ECO:0000313|EnsemblPlants:OB05G28010.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB05G28010.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB05G28010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006654551.1; XM_006654488.2. DR EnsemblPlants; OB05G28010.1; OB05G28010.1; OB05G28010. DR GeneID; 102702286; -. DR Gramene; OB05G28010.1; OB05G28010.1; OB05G28010. DR KEGG; obr:102702286; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000006038; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31684 MW; 8FFAF8DC8389C32F CRC64; MAAEAGSAAS GAAYEEERRK RVLENLKQLE DLGITKMSKS LLQAARLQKS TRASPKQRRK FEATEVRRSS RARNSVSYKD DDFGELDSFL RRRRGSRNTE QGRDYTGRIA SYEQQQSAFK RAERLQNRLD PENPSFVKTM VRSHVSSCFW LGLPSRFCKL HLPPREFKMV LEDEEGGEFD SVYIGNRTGL SGGWRGFAMH HNLEDCDSLV FELVEPDRFK IYIRKAYDED ADESESVDLE ADGDKKDASA KDATEQNDSP NAESLKGAKR RKLRARR // ID J3M8V4_ORYBR Unreviewed; 589 AA. AC J3M8V4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB05G30280.1}; RN [1] {ECO:0000313|EnsemblPlants:OB05G30280.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB05G30280.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB05G30280.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006654644.1; XM_006654581.2. DR EnsemblPlants; OB05G30280.1; OB05G30280.1; OB05G30280. DR GeneID; 102705075; -. DR Gramene; OB05G30280.1; OB05G30280.1; OB05G30280. DR KEGG; obr:102705075; -. DR eggNOG; ENOG410JSIU; Eukaryota. DR eggNOG; ENOG41108RS; LUCA. DR OMA; HICFNPR; -. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000006038; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 589 AA; 64448 MW; B08D0F40B43C60F3 CRC64; MLRRNFRGGG GEDGAGEMEG CDAEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKTIRPS QELIAMDLHG TQWKFRHIYR GQPRRHLLTT GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG VRRAVQLRNE ALFEPVNSSD SKLRILSAVA NSLENKSIFH VCFNPRSGAS EFIVPYWRFL KSLNHPFSIG MRFKACYESE DANERSTGLV SGINEVDPIR WPGSRWKCLL VRWDDSTDNN HQNRVSPWEI ERVGGSVSVT HSLSSGSKRT KLHFPQGNLD TPFLNGNGHP ESMGTENFHR VLQGQEFRGS RSHGVVCSEP PGPAVPNFQA PDNRRFSANM RGYMMPASAP PQRNTEFTYQ PVGFGESLGF PEVLQGQEMS QVVPLFRGAT SGARTQNDRV VSTNSVHRSA ALSGLPAATQ GHAISQFTLS ASKVSSPSSV LMFNQATAPH LEPKDGAGNK GIYGSQFASQ EMLAEAVTWP AIQHQMPTAS SQFAMAKASA PPSRAESGSP KSGAGRSSCR LFGFSLTENM LGEDAQVLEE GSSEAERQNP RVLELFGHRH SHSTPGALHA LCAAAPLGM // ID J3M9F1_ORYBR Unreviewed; 208 AA. AC J3M9F1; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G32250.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB05G32250.1}; RN [1] {ECO:0000313|EnsemblPlants:OB05G32250.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB05G32250.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB05G32250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB05G32250.1; OB05G32250.1; OB05G32250. DR Gramene; OB05G32250.1; OB05G32250.1; OB05G32250. DR OMA; DAMARCK; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006038; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 208 AA; 22337 MW; 82FD47798D090525 CRC64; PPCPAAPPAA AAREHLFDKT VTPSDVGKLN RLVIPKQHAE KHFPLQLPPP TTTSVLAGAG GECKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD AVGFYRSAGK HAQLFIDCKI RSKQSATTAA FLSARAATPP APAVKAIRLF GVDLLTAAAP EQDAAVAMAK SKRAMDDAIA ESQPHVVFKK QCIELALT // ID J3M9Q8_ORYBR Unreviewed; 657 AA. AC J3M9Q8; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB05G33320.1}; RN [1] {ECO:0000313|EnsemblPlants:OB05G33320.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB05G33320.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB05G33320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB05G33320.1; -. DR EnsemblPlants; OB05G33320.1; OB05G33320.1; OB05G33320. DR Gramene; OB05G33320.1; OB05G33320.1; OB05G33320. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000006038; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 657 AA; 72592 MW; 9A8DD4D48832AAC4 CRC64; MTGIDLNTVE EDEEEAAAVA EEVVVAAAVN CSQSAAPART SAADPATDEV YAELSLVPEK EEVVRRTDDA NAEEGDAMKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPAQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA AQLKNGSAFP ALYNQCSNLG TLANVAHAVA TESVFNIYYN PRLSQSEFIV PYWKFMKSLS QPFSVGLRFK VRYESEDATE RRYTGIITGS GDTDPIWHGS KWKCLLVRWD DDTEFRRPNK VSPWEIELTS SVSGSHLSTP HSKRLKPCLP HVNPEYMVPH GGGCPDFAES TQFHKVLQGQ ELLGFKSHGA TAAATSQPCE ARHLQYINER SCSNDASNNI LGVPRLGDRT SLGNPGFPYH CSGFGESQRL QKVLQGQEVF RPYRGTLVDV SMGSNGFHQQ DGPRTPGVVN KWHAQLHGRA AFHGPPALPS QSSSPPSVLM FQQANSKMPR FEFGHGQLDK HENDRRVRFG PSEGIERTEQ RISLQPNPAS GEVSDGQTIV EKSHSPGRLG KDGTDNKALG TNSCKIFGIS LTEKVPAREE LDHDDANYSL QSLKQVPKSL GNSCATVHEQ RPVVGRVIDI STMDMMI // ID J3MAL1_ORYBR Unreviewed; 199 AA. AC J3MAL1; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G10550.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G10550.1}; RN [1] {ECO:0000313|EnsemblPlants:OB06G10550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G10550.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB06G10550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006656550.2; XM_006656487.2. DR EnsemblPlants; OB06G10550.1; OB06G10550.1; OB06G10550. DR GeneID; 102714929; -. DR Gramene; OB06G10550.1; OB06G10550.1; OB06G10550. DR KEGG; obr:102714929; -. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR OMA; IDCRRRA; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000006038; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 199 AA; 21695 MW; E3AD1EB38E3831EA CRC64; MAMTTTMVAW ESRRDQLQGG GGGGHGHGGE RREHMFEKVV TPSDVGKLNR LVVPKHYAEK YFPLGAAARS SPAGTVLCFE DARRGGGETW RFRYSYWSSS QSYVITKGWS RFVRDKRLVA GDTVSFCRAG GRLFIDCRRR AAVPPTTSSL APQAASINVQ RSSAVDEKEA AAGCGGRCLR LFGVDLQLLA EPPALDLQL // ID J3MC16_ORYBR Unreviewed; 230 AA. AC J3MC16; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G15600.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G15600.1}; RN [1] {ECO:0000313|EnsemblPlants:OB06G15600.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G15600.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB06G15600.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006656731.1; XM_006656668.2. DR EnsemblPlants; OB06G15600.1; OB06G15600.1; OB06G15600. DR GeneID; 102705443; -. DR Gramene; OB06G15600.1; OB06G15600.1; OB06G15600. DR KEGG; obr:102705443; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000006038; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 26607 MW; E1946E0987D1108B CRC64; MAEATPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPTKQRKRK ARATPGAGED VPLRRSGRVA SLPERPKYQD EFQDFGKKIR RSYGGKRRYL SNRVYATDEE REHAITAAQE LEEELGSDHP IFVKPMLQSH VTGGFWLGLP THFSRKYLPK RDERIVLVDE ADDEFDTLYL ANKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTKFKVYII RASSYYETDS // ID J3MC28_ORYBR Unreviewed; 1051 AA. AC J3MC28; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G15720.1}; RN [1] {ECO:0000313|EnsemblPlants:OB06G15720.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G15720.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB06G15720.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006656735.1; XM_006656672.2. DR STRING; 4533.OB06G15720.1; -. DR EnsemblPlants; OB06G15720.1; OB06G15720.1; OB06G15720. DR GeneID; 102706854; -. DR Gramene; OB06G15720.1; OB06G15720.1; OB06G15720. DR KEGG; obr:102706854; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000006038; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 935 1019 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1051 AA; 116178 MW; CAC652A58A356B0D CRC64; MKDQGSSGVS PGPAEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMNK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYERDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELSAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDQARWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LLPGLSLVQW MAMQQNPQML TAASPTVQSP YLTPNVLAMQ DVMGNSNEDP TKRLNAQSQN IVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ QVQPSQQSSV ILQQHQAQLL QQNTIQLQQH QEHLQRQQSQ PAQQFKAAAS LHSVEQHKLK EQTSGGQVAS QAQLLNQIFP PSSSQLQQLG LPKSPTQRQG LTGLPSSGSL QQSTLTQTSQ VQQATEYQQA LLQSQQQQLQ QLSQPEVQLQ LLQKIQQQNM LSQLNPQHQS QLIQQLSQKS QEILQQQILQ HQFGGSDAMG QLKQSPSQQA PLNHITGSLT PQQLVRSHSA LAESGDPSSS TAPSASRISP LNSLSRAHQG SRNLTDMVAT PQIDNLFQEI QSKPDNRLKN DIQSKEPVSV PSRHPVSDQL DASSATSFCL DESPREGFSF PPVCLDNNVQ VDPRDNFLIA ENVDALMPDA LLSRGMASGK GMCTLTSGQR DHRDVENELS SAAFSSQSFG VPDMSFKPGC SSDVAVTDAG LPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYRDYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVGCVK SIKILSAAEV QQMSLDGDLG GVPSQTQACS ASDDANAWRG S // ID J3MG15_ORYBR Unreviewed; 522 AA. AC J3MG15; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G29590.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G29590.1}; RN [1] {ECO:0000313|EnsemblPlants:OB06G29590.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G29590.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB06G29590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB06G29590.1; OB06G29590.1; OB06G29590. DR Gramene; OB06G29590.1; OB06G29590.1; OB06G29590. DR eggNOG; ENOG410JQPS; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR OMA; ELAWATS; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006038; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 522 AA; 57894 MW; 03211CB343ECA12C CRC64; MALSAGVRRS KYAAPLLSPA CLRRLCVPGE FVAALGPGDA GEAAAVVLVV GPLGKVWRVE LAWATSEGWT VVLRLERRGV ASLRAFDPCC CLARFCTPHT GMKTKDRPRF IKLLQQEDLE KMKIPEKFVQ QHLTETCTNS HQNAIILSPL GKFCRVEVER EQPDMLLRDG WAAFLAAHDL SEGNILLFRY EGNMVFTVEV FLENGCLKEY TTATLYLTDG SKGRSVAPQQ CVTKAEVSPV KRKRTQRSGG ACLEESSRKS RASPISVKKV ESHMKHLSIV PQNSFTKEMT SYSVHSLLAV KGTFCSQIGL LEASTITLKI SMKNKGSWRV AFKTANTYGY INGPGWRKFC LEKKHEFSHS LDENNLGILT ILLHSNLQIP WDTAWQREQC KSWLLPGSCH LYNDSINVFK WWVHQNSIVY GQKRPNDEPL GESEMRLKII TIIERVLVRV CVTNVSQVAI SVLGNGWCVS SCAGDLKSIS VNGGGIVTRL GEELRSGRSR MSGDDIEYDL AHGGATPCGM ES // ID J3MGU8_ORYBR Unreviewed; 916 AA. AC J3MGU8; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G32420.1}; RN [1] {ECO:0000313|EnsemblPlants:OB06G32420.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G32420.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB06G32420.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006656378.1; XM_006656315.2. DR STRING; 4533.OB06G32420.1; -. DR EnsemblPlants; OB06G32420.1; OB06G32420.1; OB06G32420. DR GeneID; 102711985; -. DR Gramene; OB06G32420.1; OB06G32420.1; OB06G32420. DR KEGG; obr:102711985; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006038; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 785 869 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 916 AA; 101647 MW; 4B80E0AE6DABA9F4 CRC64; MRLSSSSGSV IPAQAASPEA VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPA QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRESA NPGFQSLNFG GLGMSPWMQP RMDASLLGLQ PDIYQTIAVT AFQDPTKQVS PTMLQFQQPQ NMGGRANTLL PSQVLQQVQP QFQQQQYLQN INETTIQGQA QSEFLQQQLQ RCQSFTEQKP QLPTQQQQES QQQQQQQQTQ CMQVPQHQQM QQQKNMANYQ SVSNALSPFS QLAASQSSPM TLQTVLPFSQ PQSFPDTNMS SLSPSNTSTI HNTLRPFSSE APSHLSMPRP TAIPVPDPWS SKRVAVESLL PSRPQVTSQI EQLDSTTPNI PQSSALAPLP GRGCLVDQDG SSDPQNHLLF GVNIDSQSLL MQGGIPSLQG ENDSTAIPYS TSNFLSPSQN DFPLDQTLNS ADCLDESGYV PCSQNSDQVI NRPPATFVKV YKSGTYGRSL DITRFSSYHE LRRELGRLFG LEGQLENPLR SGWQLVFVDR EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPFELL SSAPGKRLGS SCDDYVSRQE SRSLSTGIAS VGSVEF // ID J3MGZ8_ORYBR Unreviewed; 695 AA. AC J3MGZ8; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G32920.1}; RN [1] {ECO:0000313|EnsemblPlants:OB06G32920.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G32920.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB06G32920.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006656399.1; XM_006656336.2. DR STRING; 4533.OB06G32920.1; -. DR EnsemblPlants; OB06G32920.1; OB06G32920.1; OB06G32920. DR GeneID; 102717533; -. DR Gramene; OB06G32920.1; OB06G32920.1; OB06G32920. DR KEGG; obr:102717533; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006038; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 689 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 75764 MW; 855BA245361487BF CRC64; MITFVDSAAK ERERENDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHA EHAQGQGPVE FPAGRVPALV LCRVAGVRFM ADPDTDEVFT KIRLVPVRAN EQGYPADADD GIGAAAAAAA QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPELL PPPLPPAGGN YGGFSMFLRG DDDSNKMAGA ARGKVKARVR PEEVVDAANL AVSGQPFEVV YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV EVVSNMPAIH LAPFSPPRKK LCVPLYPELP IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH RLHQLDHGMQ PRIAAGLIIG HPTARDDISC LLTIGSPQNN KKSDCKKAPA QLMLFGKPIL TEQQISLGDA APMSVRKSSS DGNAEKTVKK SNSDVSSPRS NQNGTTDNLS CGGVPLCQDN KVLDVGLETG HCKVFMQSED VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA AGALKHTGDE PFSEFTKTAR RLNILTDTSS NNLAR // ID J3MHD5_ORYBR Unreviewed; 1160 AA. AC J3MHD5; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G34290.1}; RN [1] {ECO:0000313|EnsemblPlants:OB06G34290.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G34290.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB06G34290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006656453.2; XM_006656390.2. DR STRING; 4533.OB06G34290.1; -. DR EnsemblPlants; OB06G34290.1; OB06G34290.1; OB06G34290. DR GeneID; 102709287; -. DR Gramene; OB06G34290.1; OB06G34290.1; OB06G34290. DR KEGG; obr:102709287; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000006038; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1025 1109 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 599 632 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1160 AA; 128071 MW; 35F77EC5E5E93923 CRC64; MMKQAQPQQQ QPPVTASSTV TATAAAVTSA MAAAAAVGSG CEGEKKAPAI NSELWHACAG PLVSLPPAGS LVVYFPQGHS EQVAASMQKD VDAHVPSYPN LPSKLICLLH NVTLHADPET DEVYAQMTLQ PVTSYGKEAL QLSELALKQA RPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VIFVRDEKQQ LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHAAANN SPFTIFYNPR ASPTEFVIPF AKYQKAVYGN QISLGMRFRM MFETEELGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESAAGERRNR VSIWEIEPVA APFFICPPPF FGAKRPRQLD DESSEMENLL KRAMPWLGEE ICIKDPQTQN TIMPGLSLVQ WMNMNMQQSS SFANTAMQSD YLRSLSNPNM QNLGAADLSR QLCLQNQLLQ QNNIQFNTPK LSQQMQPVNE LSKATIPLNQ LGVSTKPQEQ IHDASNLARQ QPSMNHILPL SQAQASFGQA QVLVQNQMQQ QHASSTQGQQ PTTSQPLLLP QQQQQQQQQQ KLLQQQQQQQ QLLLQQQQLQ QQQQLNKVPS QLPSLANQQL QLSDQQLQLQ LLQKLQQQQQ SLLSQPGVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLPQQQ MMPQQSTRVP SQNASLPPPV QQEPQQKLLQ KQAMLADTSE AAVPLTTSAN VISTMGSPLM TAGATHSVLT EEIPSCSTSP STANGGHLLQ PILGRNKHCS MINTEKVPQP AAPMSVPSSL EAVTATPRMI KESPKLNQNV KQTVVASKLA NAGAGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHPN FPMSNFSQPQ MFKDAPPETE IHPPNTSNNA LFGINSDGQL GFPMGTDDFL SNGIDAAKYE NHISTEIDNG YRIPKDAQQE ISSSMVSQSF GASDMAFNSI DSALNDGGFL NRSSWPPAPP LKRMRTFTKV YKRGAVGRSI DISQFSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH EDDILLLGDD PWEEFVGCVR CIRILSPQEV QQMSLEGCDL GNNSIPPNQA CSSSDGGNAW RARCDQNSGN PSNGSYEQFE // ID J3MJ34_ORYBR Unreviewed; 417 AA. AC J3MJ34; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G14160.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB07G14160.1}; RN [1] {ECO:0000313|EnsemblPlants:OB07G14160.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB07G14160.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB07G14160.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB07G14160.1; OB07G14160.1; OB07G14160. DR Gramene; OB07G14160.1; OB07G14160.1; OB07G14160. DR OMA; HRENRAG; -. DR OrthoDB; EOG09360CVW; -. DR Proteomes; UP000006038; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 417 AA; 47265 MW; 65C4D01E8DEA6C9C CRC64; MNKYANFWQV RPVGNLDLLP PPPRSPKKLE ISEQCPSPLT QPLVCRQEFL CRVVAVRVSA SAETNEPYAA ISLKPDVVPD DDVPNPSPAP DQHHHQQPQI FYFVKELTYR DVDYRDLFVA PMSAANKVFP PPLEHKQTQD LSMRDLQGFR MHFKHRENRA GSVELRKGWR GFKKDMDLID GDHVIFMRRP ASGQLFVGVR RQRDVPKRVR PIKHRAKATT TVPLQEVMEA ARLAAAGVEF TDGDEFVVPH KVVVEGLKVW RARLIPAMVM KFSWAVQDDA PPIVGPQGKI VRIISTRMWR NLEVGWPQSS KMNRWTNFWQ VRPVFYPNLL SSSSSPSPQK KLKISETTTD LPSSSSPHPP KELNIFETAT NIPSSSPPPQ PPKELNISEV AAASASMEQE ETLDELLDQL FSKPPFL // ID J3MM19_ORYBR Unreviewed; 1694 AA. AC J3MM19; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G24510.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB07G24510.1}; RN [1] {ECO:0000313|EnsemblPlants:OB07G24510.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB07G24510.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB07G24510.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB07G24510.1; OB07G24510.1; OB07G24510. DR Gramene; OB07G24510.1; OB07G24510.1; OB07G24510. DR eggNOG; ENOG410JA51; Eukaryota. DR eggNOG; ENOG410ZJVC; LUCA. DR OrthoDB; EOG093601G7; -. DR Proteomes; UP000006038; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR004330; FAR1_DNA_bnd_dom. DR InterPro; IPR031052; FHY3/FAR1. DR InterPro; IPR018289; MULE_transposase_dom. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR006564; Znf_PMZ. DR InterPro; IPR007527; Znf_SWIM. DR PANTHER; PTHR31669; PTHR31669; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF03101; FAR1; 2. DR Pfam; PF10551; MULE; 1. DR Pfam; PF04434; SWIM; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00575; ZnF_PMZ; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50966; ZF_SWIM; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00325}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00325}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00325}. FT DOMAIN 370 471 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1508 1555 SWIM-type. {ECO:0000259|PROSITE:PS50966}. FT DNA_BIND 370 471 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1694 AA; 189420 MW; 065B89082DF93DFC CRC64; MAPTGSTWSD RYVVVISVEY AGVLCKFWSH SFEHGGFCET FHLDVAGWRN CESCGKRLHC GCIVSVHAFV HLDAGGVECV MCARKSHAAV APNQIWSSSM HMAQVADRKD NFVKSWRPPA GQYASQWRQN NMWGVQTIQS DLQQRLAYEF DRPSGSEKLL PGRTFIQAHE KKFDDMHDRP TTPAAMNQIM RERYANGHTQ HNSLDPTYAY TIYHREGSNP NLHDHGHHGG ENDHLSARKG VAPDPCSSVS TTFKLDSHHP SILKDDPTAL PPGLSPNFSS ANGPKDHIRI GPQQQQQMAS SSLQKQFYSH TVIDNDFQAQ LRNGRPRMDA KARSQLLPRY WPRITDQELQ HLSGEYPKFS ISNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS QAEGLPLKVQ DATGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA TNLSAEQDQP TKPANGVPPP PEANIKVSAP NCSPNTAVPR LDKVNTEGKS SSPVEQATAC KIDKGALSQK EGPGTSSSSP GPVKRKATSV GPKIKRFRMD SEESMELKIT WEEAQELLRP PPKAPSIVVV DGHEFEEYEE PPILGRRTHF VTDQSGSSCD SAQEINTEEL AEMIPIKPGA AKKSKGKVDT DNIDVSDGLD TLANLAILGE VRRRFRTLMM RREKRQRSEK DSETPRRKET GQSSEPAPQA GSAATQTSTT SSPQKADTNG DGPEDMAIEN KRTTSPIKNQ IDLNSQPERE DEQSPKSDAD LANEGASIGF HWREKARAIG STLLGIGRDK QKHGLPNQKS LRPVNVAINL ADDPRLTQQP CPGHVAILPP HTPWAVHVPI PPAPLSPANP QQNGDVVVAD VSPAIDNCDE KMLPKVDMLF DGENEAYEFY NVYAEMVGFF VRRSTLWTTS KNIITRRTFV CSREGFREKK RGTKEAKCPR PETRIGCPAS MTIRLNANGK YRLTEFVPNH NHQLATASTM HMLKAKKIRL KARAVRENLV DDTVRTPEFE SEDEAYEFYS MYAGKIGFNV RRASMTMNAE NIITRRMFVC SKEGFREKKR GAKGVKKPRP ETRTGCPACM VIRLASNGKY HVTEFVTFHN HPLGAAVPCD LVATSQSTET GQDDGMDVVD GSADANIHKQ NLISDNTMAA SLESRINKRF KCTKVPHNGD IGATLEYLQK MQHDKPSFFF AVKSDDDGNL TNFLWADSKS IMDFVHFGDV VCLDSAYALQ GYGRPLALFT GLNHHKQTII FAAALLYDES AEAFRWLFDA FKMAMNGTQP KTLLTDRSAA ISEGAAASWP ATAHRYCVWQ IYQNALQQLS QAFHGSRTLE YSFKKCLFDC EDEPEFLTAW REMLEKYDLE DNKWLADLFS LKEKWALPYG RDAFCADMKS VQQKESLGIE LKKHLSLEFG LLSFFQQFER VLCDRRSAEL QADVEASQST KKPPPMRVLR QACNVYTPSA FKMFEREFEL YMDCMLYNCG EMGTVSEYKV TIEDNQMDHF VKFDSLNSRL SCSCKGFEFI GIPCRHMLKV LDTRNIKDLP PQYILRRWRK DAKSGSSNGS YSFPFDSDPQ LAQTKRYNLL CRIFSIAAAR AATSVDTSAY MENQSSILMD QVEQALETRP PDMAAIIGAH SNQTQNPIDN IITGLHNHTN FINGSADGSL TFPFTLGAGA LDYH // ID J3MP53_ORYBR Unreviewed; 953 AA. AC J3MP53; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G31850.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB07G31850.1}; RN [1] {ECO:0000313|EnsemblPlants:OB07G31850.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB07G31850.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB07G31850.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006658132.1; XM_006658069.2. DR EnsemblPlants; OB07G31850.1; OB07G31850.1; OB07G31850. DR GeneID; 102713835; -. DR Gramene; OB07G31850.1; OB07G31850.1; OB07G31850. DR KEGG; obr:102713835; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000006038; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 364 465 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 624 674 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 364 465 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 953 AA; 104434 MW; 06530AE81D818D8A CRC64; MAGMAAAALV AKRCMNAACG APAPSPAGGE WRKGWPLRSG GYAVLCDKCG LAYEQLVFCD IFHQKESGWR ECSFCGKRLH CGCIASKKSF DLLDSGGVQC VNCIKNSAVQ SVSSPVVPKI FSSQNNPRLF GKSDELLSGR PLETPSLMVD ARNDDLTIIA KTNHPFMVKN IEAGQCSNIL RQQELENGSR QVKWELPTLN ISDMRRMPFL TRSQSALESS QCARRDENKD PTAESTTSES LSEACLNMSL GIASNGNKLE ATSTVERPTL SPTTGFAEGR ELTTALSPFQ HAQRARHFLT RPPRVGEGAV FDPTKDMLPH LRVARPPAEG RGRNQLLPRY WPRITDQELQ QISGDSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP LTIQDAKGKE WHFQFRFWPN NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IEPGGKLVMG FRKATNTVSL PDSQISAIAN GSILGDSLFS NTNENLAIVS GYSGFLQSIK GAADLHTSSL YDHHVNSADG DVSWLKADKF GSRPDEGSLQ FLKRGRNIGS KSRRLSMDAE EAWELKLYWD EVQELLRPAP SAKPTVVMIE DYEIEEYDEP PVFAKRSIFT IRSTGEQDQW IQCDDCSKWR RLPLNVIVAS KWTCADNTID PKSCSCSAPE ELTPKELHIV LQQYEDMRRR KNSFGFKQSM PEMDAASLDA LATAAVFGEV GNQGVPSVAT TTKHPRHRPG CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR RRFKTLMMRK KQRQSEREEA EASKKIAWMS RDEPEGSSLS RSPQTMDTTR DGDVTMADKV DINKGHIDLN FHPTTIRDEE QHGGPQPRMS MVSLLEVANR PLENYMKQNG LTSLAGEQGS SSTCTGAAAT APQPAPVESE ERTSNTEGGR VPSAEQPESM AVDEAGDNPP DKAAAAASDA AAA // ID J3MPI2_ORYBR Unreviewed; 364 AA. AC J3MPI2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G10110.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB08G10110.1}; RN [1] {ECO:0000313|EnsemblPlants:OB08G10110.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB08G10110.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB08G10110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006659013.1; XM_006658950.2. DR EnsemblPlants; OB08G10110.1; OB08G10110.1; OB08G10110. DR GeneID; 102704633; -. DR Gramene; OB08G10110.1; OB08G10110.1; OB08G10110. DR KEGG; obr:102704633; -. DR eggNOG; ENOG410JDZ5; Eukaryota. DR eggNOG; ENOG41116M3; LUCA. DR OMA; KFIIRGE; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000006038; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 255 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 255 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 364 AA; 40312 MW; B7C46F13ED8D973B CRC64; MGQMDGGGDG GGYPYHYQAL LAAVHQQTVP FPNPFPAPSS GTEAPLHNHS HNHNHNHNHN HNHNHNHNHN HNHNHNHNAA PHPHTPTPRG FADWSASTSA FTSLAAHSSP APSNAVHYSF SPCYAFWAHY MVNKNAYPSF PAPHEEPPHQ LRLANSHPRD ASGPASSFGV ESFNSASMAP NICNHMPPIE GPISANEDKK PEILPRVIKS SDELETRNSG VELHCETVGA LPESKQSHES RATKLLNSGE YQVILRKELT KSDVGNVGRI VLPKKDAEAS LPPLLQRDPM ILHMDDMVLP VTWKFKYRYW PNNKSRMYIL DSAGEFLKTH GLQAGDVIII YKNLASGKFM IRGEKAIHQQ TTNS // ID J3MQJ2_ORYBR Unreviewed; 194 AA. AC J3MQJ2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 12-APR-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G13710.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB08G13710.1}; RN [1] {ECO:0000313|EnsemblPlants:OB08G13710.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB08G13710.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB08G13710.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB08G13710.1; OB08G13710.1; OB08G13710. DR Gramene; OB08G13710.1; OB08G13710.1; OB08G13710. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000006038; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 121 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 194 AA; 20652 MW; C57E05624E033878 CRC64; MYMDLTLGGA VLQVEATEEE EEEEEQALGQ EATPAALVLG RREVVVGGGG GGCGAVEREH MFDKVVTPSD VGKLNRLVVP KQHAERFFPA AAAGTQLCFE DRAGTPWRFR YGPGSATMFL DTVVPVVAGH RVDVGPTGQR SFRLFGVNVE CGGNDAAAAA AAAEEADDAA GDDDDDDGDR RGEEMELVMW TNHR // ID J3MSM5_ORYBR Unreviewed; 246 AA. AC J3MSM5; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G21050.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB08G21050.1}; RN [1] {ECO:0000313|EnsemblPlants:OB08G21050.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB08G21050.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB08G21050.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006660090.1; XM_006660027.1. DR EnsemblPlants; OB08G21050.1; OB08G21050.1; OB08G21050. DR GeneID; 102702875; -. DR Gramene; OB08G21050.1; OB08G21050.1; OB08G21050. DR KEGG; obr:102702875; -. DR OMA; KRRTMKH; -. DR OrthoDB; EOG09360IMJ; -. DR Proteomes; UP000006038; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 27136 MW; C6D0F998B4D4277A CRC64; MAASAPLSAT TVGVEDVADI EVLEMEYLFE KLLMPSDMCG STEWLGIPEE HAWKLGRMVQ DQDGYFTVFV EDGVVPGKQW HFRYWGNKKI HGLTKGWRCF VSEKGLKAGD TVSFFRGAVC SRLFICYRSG ARANLCSFAT SPHGLSAPLG QARPRAVNEV GGRGQRRQTS SGRSGALPLP LPVSSRRRHR TSVVRPIPEP MTEMPPILES MFLVATPPAV KTIRLFGVDI KVPLPSIVQP KRESNP // ID J3MUH7_ORYBR Unreviewed; 1111 AA. AC J3MUH7; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB08G27580.1}; RN [1] {ECO:0000313|EnsemblPlants:OB08G27580.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB08G27580.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB08G27580.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006659604.2; XM_006659541.2. DR STRING; 4533.OB08G27580.1; -. DR EnsemblPlants; OB08G27580.1; OB08G27580.1; OB08G27580. DR GeneID; 102719607; -. DR Gramene; OB08G27580.1; OB08G27580.1; OB08G27580. DR KEGG; obr:102719607; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000006038; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 993 1077 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1111 AA; 123392 MW; 831D2052B73104D5 CRC64; MAAPAASSGA EEGEGRGARV NQELWYACAG PLVSLPPQGS LVVYFPQGHS EQVAASMRRD ADAQIPSYPN LPSKLICILH SVTMHADPDT DEVYAQMTLQ PVSNVSQCDK ETLLASELAL KQTRPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPRLD FSMQPPAQEL QARDLHDNAW TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA GDSVLFIRDG RQQLLLGIRR ANRQPTNLSS SVLSSDSMHI GVLAAAAHAA ANNSQFTIYY NPRASPSEFV IPFAKYQKAV YGNQLSLGMR FRMMFETEES GTRRYMGTIT GISDLDPVRW KTSHWRNLQV AWDEAAPSER RTRVSLWEVE PVIAPFFIYP SPLFTAKRPR LPGMADEGTE MDSVIKRTMP WLGEEICKKD LNIQNNAVTG LNLAQWMNMQ NNSLPGSVVQ PELLSPLSGK PVQNLAATDL SRQISFHTQF LQQNNIQFNT ALVPQQNQQT EQLAKAIATP NQLVSVIIPQ KVVQDCNSEQ RQHVVTQTVQ GNQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ LQQTQPLVQS HAVLQGGLQQ IQLLQQQQSH VQHQQVTQQL QQQQTQQLQP VQQVQHSVQD QQIKMQPVHV SADANINKQI ADHQMKLQLL KALQPQQPLI SEQQKMLLDL QQQMISSQSA PQQCVQVTTQ ATSLHNSDNA LYPTQHKVQS HQQVQDLTGN VIPNAKPDIV TSLGASSLHA AGGLQLLKTD DVSSSSTSPS TNSNHVLLQP IQSSSKNQSL TTAGKTSQSS VVLGPTIEQD RKPYQNVEQT MMIPKMTEQR PTTGQDCIKN NPQMDYLDTS SSATSVCLSQ ADGSLQQNFQ PLSFNPHPLL KDTVPDSVFE VTDPRNNLLF GVNIDGQLGL PLNADLLAND IETDKYMDQL PGNGISNYIS SKDSQQELSS SMISHSFGVA DMAFNSIDSA INETPFLNRN SQATAGPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK HDVARMFGIE GQLGDQNRVG WKLVYEDHEK DVLLVGDDPW DDFVKCVRCI RILSPQEEMQ MRLVGDFGDR FLTNQACSSS DGGHPWRITG D // ID J3MWX2_ORYBR Unreviewed; 1529 AA. AC J3MWX2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB09G15010.1}; RN [1] {ECO:0000313|EnsemblPlants:OB09G15010.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB09G15010.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB09G15010.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB09G15010.1; -. DR EnsemblPlants; OB09G15010.1; OB09G15010.1; OB09G15010. DR Gramene; OB09G15010.1; OB09G15010.1; OB09G15010. DR eggNOG; KOG4658; Eukaryota. DR eggNOG; COG4886; LUCA. DR OrthoDB; EOG093600LR; -. DR Proteomes; UP000006038; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 2. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 186 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 186 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1529 AA; 171892 MW; E1A2EB50C59CB69A CRC64; MESEGDIPSS CGNERFRKMA TLVDSAAKER ERENDKCLDP QLWHACAGDM VQMPPVNSKV YYFPQGHEEH AHAQGQGPVE FPAGRVPALV LCRVAGVRFM AEPDTDEVFA KIRLVPVRAN EQGYPADADA DDGIDAAAQE EKPASFAKML TQSDAISGGM FSHFSVSRYC SKTIFRRLDC STDPPSQTIL AKDVHGVVWK FRHIYHDMPL CHRLTTGWST FVKQKKLVAG DSVVFMRTKN GDLRVGIRRG KKGGVGGPKL LPPPLLPEIA NYGGFPMFLR SDDDSNKMAA AAASGKVRAR VRPEEVVEAA NLAVSGQPFE VVYYPRASTP EFCVKAGPVI AAMRTQWLAG MRFKMAFESE DSSRISWFMG TVSAVQAADP VRWPNSPWRI LKVSWDEPYL LWNVKRVSPW SVELVLNKPA IHLAPFSPSM KRPREPLYLD LSTIDDQFPT PMFGGNPIAR GIGTPTGEQG AKHAQFVESV DSQSRFKYHF DREVDSIGED FSTSRYWYLA IQKEWRPDNT ELTGEGTSGP AWNSIVQTKT YQYLPNVEQW MQDKPVMLQR ALSRMHDLVN VAELWVHKDA VARLLQEAKD EVYSAENLLD ELDYYELQSK VNQNTNPFRF PLHFEILMDW IHTNIDHLIG QMGNLGLQDM RHMSMDKSLH QKVDLFHEET IVGRGKDLME LLIRVLDFQG RSSTSDREQA SCTSVLDLDQ TRSENVCVLP IVGSGGVGKT TLVHQIFNEK RIQDHFDQQI WLCVSDGFDE KKLITRLLCS LADNELKSDD LSCLQRFLTN GIIHHSKRFL LVLDDMQEDV CKEEFNGWKG FLAPLECARP GSTILVTTRS LKVAEHLGTK KHFVLDGLPE ESLWELFRMH AFGSDYTNRN QELEGIGRSI VARLNGSSLG AKILGRLLSL KLDGIYWKSI LESELWDLPH QEVISSNPAL LLSYQYMPSP LRHCFSFCSL YPKGYSLEAE LLVNCWVAVG LVAPYGDMLA ADIGHLYFQQ LVDRSFLQRV TSSKYVMHGL LYDMAHQISS SECFVIKGSG DLSRIPPKVR HVSILNYSGL SSSDLESLQN YSTLRSVVCI GINSDALTAS VLETWFNHLT NIRMLKFISC QPKEIPGNVG NLICLRYLDI SSCELEVLPD SFWRLHKLEI LDAQNCRFDC VPKEIVKLVN LRKVRLKGGL IDQLGCVPGV GKLIFLQEMP YYAVDDTPGR RIEELENMNH LRGALEISGL HHVTGKEQAA GASLDKKIHL DTLTLSWHDS IRPDKHNSNL EMEVLESLRP SPSIKNLEMR FYMGSGFNPS WFYMGSEFHP IWFLYGKEDE PISGRLESLS ISSCPNIVSL FVTETSSSSS NGSSPVFRSL TKLCITWCRK LRSLDNLLDP LLLPKIRVIQ ISNCEELASL PTDQLGEFAH LEDLEVSHCW SLGWERGLTL PSSLKSLKLE ACGEPMDPAL SRGLRGLPAI TTLELQFCSG LESIGAEVWS GLTSLRRLKI FCCQELSSIG GAESIARVEE VDIRHCPKLT ELEQPFQRG // ID J3N3G1_ORYBR Unreviewed; 664 AA. AC J3N3G1; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB10G20590.1}; RN [1] {ECO:0000313|EnsemblPlants:OB10G20590.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB10G20590.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB10G20590.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4533.OB10G20590.1; -. DR EnsemblPlants; OB10G20590.1; OB10G20590.1; OB10G20590. DR Gramene; OB10G20590.1; OB10G20590.1; OB10G20590. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006038; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 97 199 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 569 647 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 97 199 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 72620 MW; FDA11EDE909BDFCD CRC64; MKEVGEEDRC LDPQLWHACA GGMVQMPAVR SRVYYFPALV LCCVEGVQFL ADPESDEVYA KIRLAPVGPG EVEFQEPEEL CPLGGDPSEP PEKPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPKLDYRA DPPVQTVLAK DVHGEVWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFLRTRLGE LCVGIRRAKR VACGGMECMS GWNAPGYGGF SAFLKEEESK MMKSPGGGYM RGRGKVRIAD VAEAAGLAAN GQPFEVAYYP RASTPEFVVK AASVQAAMRI QWCSGMRFKM AFETEDSSRI SWFMGTISSV QVADPNRWPN SPWRLLQVSW DEPDLLQNVK CVSPWLVELV SSIPPIHLGP FSSPRKKLRV PPHPDFPFEG HLLNPIFHGN PLGPSNSPLC CYPDNAPAGI QGARHAQFGL PITDHQLNKL HLGLFHGGSF NRLDAIALPS RISKGFMVSS APAHDNVSCL LSIGTPQTTE KCDDRKTTSH IMLFGKAIFT EQQITSSGSM ETLSPGVTGN SSPTGNEQKA GNASDGSGSS ICVGFLSQGH EASDLGLEAG HCKVFLESED VGRTIDLSVL RSYEELYGQL ADMFGIEKQE IISHLHYRDA AGVVKHTGEV PFSHFMKVAR RLTIIAGDKG RIERPLIECL VEQA // ID J3N4G2_ORYBR Unreviewed; 198 AA. AC J3N4G2; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB10G24100.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB10G24100.1}; RN [1] {ECO:0000313|EnsemblPlants:OB10G24100.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB10G24100.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB10G24100.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB10G24100.1; OB10G24100.1; OB10G24100. DR Gramene; OB10G24100.1; OB10G24100.1; OB10G24100. DR OMA; CPAVMDD; -. DR Proteomes; UP000006038; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 198 AA; 21261 MW; CAF83B263A4534CF CRC64; MEFTPIAPPP LQLHHSGAGE EDGACAAAAW AVVEKEHMFE KVVTPSDVGK LNRLVIPKQH AERYFPLDAA AAGGGKGLVL SFEDRTGKAW RFRYSYWNSS QSYVMTKGWS RFVPAAVVLK SMPVHVAASA VQEATTRPKR VRLFGVNLDC PAVMDDDEDN IARAARAAAS SLLQLPSPSS STSSSTGGKK MCSLDLGL // ID J3N656_ORYBR Unreviewed; 274 AA. AC J3N656; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB11G12920.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB11G12920.1}; RN [1] {ECO:0000313|EnsemblPlants:OB11G12920.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB11G12920.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB11G12920.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006662746.1; XM_006662683.2. DR EnsemblPlants; OB11G12920.1; OB11G12920.1; OB11G12920. DR GeneID; 102699438; -. DR Gramene; OB11G12920.1; OB11G12920.1; OB11G12920. DR KEGG; obr:102699438; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR OMA; QHAGESQ; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000006038; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 30692 MW; 6D53F0EBC49E1522 CRC64; MAMNPLFSQE HPQAWPWGVA MYASFHYHHH YEKEHMFEKP LTPSDVGKLN RLVIPKQHAE RYFPLAGDAA DKGLILSLED EAGAPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV YFERVRGSFG VGDRLFIGCR RRGDAAQTPA PPAVRVVPAA QNAGEQQPWS PMCYSTSGSY PTSPANSYAY RRVGEHDHGD MHHAEESPRD TESRSPSFSA GSAPSRRLRL FGVNLDCGPE PEADATEATA MYGYMHQQSS FAAMSAVPSY WGSS // ID J3N6M8_ORYBR Unreviewed; 435 AA. AC J3N6M8; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB11G14640.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB11G14640.1}; RN [1] {ECO:0000313|EnsemblPlants:OB11G14640.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB11G14640.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB11G14640.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006663274.2; XM_006663211.2. DR EnsemblPlants; OB11G14640.1; OB11G14640.1; OB11G14640. DR GeneID; 102705762; -. DR Gramene; OB11G14640.1; OB11G14640.1; OB11G14640. DR KEGG; obr:102705762; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000006038; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 327 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 327 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 435 AA; 49680 MW; BCDCE92472900308 CRC64; MRDMGRRSRE GEGEEEERAV AASRVVREEQ GGRMEKEKRK EKGKGKEKER REEDKHFGRS FFRVLLTPQS LERMKIPSSF NQCLQNQPTG MVSLADRSGN TWSAELTSDS EGFCFVHGWK QFVRDNFIQC GQFVVFTYDK RSHFSVVVFD PSGIDKMPSH FTHLSKKLII KTESDEMGID NAAITSEKMA PLPKDNNRTA GKIAIDVDCH MEDRVLLKKS NEANVSGSAK RKRSRASLGK SKATSISHNS TKDSSNNMSD EDMSCSKSPK APFLMRFMSG EVARRGKCMS RGQRQLRVIS QRRPVTEAEK DHALQRAKEF KSKNPFVLQI MMESYVYVGF FMNIPCEFVR ECLPRTSKRI TLWDPQGKAW AVNYVYYSDR SVGSFSGGWG KFAVGNNLEK FDVCVFELVQ KDNIKVHIYR VVPEITPPKL QADKR // ID J3N8Q5_ORYBR Unreviewed; 867 AA. AC J3N8Q5; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB11G21910.1}; RN [1] {ECO:0000313|EnsemblPlants:OB11G21910.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB11G21910.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB11G21910.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB11G21910.1; OB11G21910.1; OB11G21910. DR Gramene; OB11G21910.1; OB11G21910.1; OB11G21910. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006038; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 739 823 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 867 AA; 95278 MW; 7447475F1F9C2628 CRC64; MAAAEVEAAA GLGGGEGDAA AAAAAAARGE LWWGGGGGGG GGGGGGGGED ALFTELWSAC AGPLVTVPRV GEKVFYFPQG HIEQVEASTN QVGEQRMQLY NLPWKILCEV MNVELKAEPD TDEVYAQLTL LPESKQQEEN GSSEEEPTAP PATHVRPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGV EWRFRHIFRG QPRRHLLQSG WSVFVSAKRL VAGDAFIFLR GENGELRVGV RRAMRQQTNV PSSVISSHSM HLGVLATAWH AVNTGTRFTV YYKPRTSPAE FVVPYDRYME SLKRNYSIGM RFKMRFEGEE APEQRFTGTI VGMGDSDPAG WPESKWRSLK VRWDEASSIP RPERVSPWQI EPAVSPPPIN PLPVPRTKRL RPNVTASTTD SSATVKEAAP KVAVEPEPNG MHRAFQTQEN ATPKAGFGNN SELDTAQKSI LRPSGFDREK NNIPMQWKAG SDGRMQMNRP ESYSEMLSGF QPPKDVQTPQ GFCSLSEQIK AGHSNFWHTV NAQYQDQQGN HNIFPGSWSF MPPNTGLGLN KPSYSMVQEV GGLSQRAANT KFGSGVYAPL PGRGIEQYSG GWFGHMMPSS HMDDTQPRLI KPKPLVVAHG DVQKAKGASC KLFGIHLDSP AKSEPLKSPS SVVYDGMPQT PGATEWHRPD VTEVEKYSDP SKPMKPLDAP QSDSVPEKPL SCQQASRNMP CKSQGGSTRS CKKVHKQGIA LGRSVDLTKF NGYEELIAEL DDMFDFNGEL KGPNKDWMVV YTDNEGDMML VGDDPWIEFC DMVHKIFIYT REEVQRMNPG TLNSRSEDSH ANSMERSSVG REMRGCLSTS SLNSDNC // ID J3N926_ORYBR Unreviewed; 162 AA. AC J3N926; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB11G23120.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB11G23120.1}; RN [1] {ECO:0000313|EnsemblPlants:OB11G23120.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB11G23120.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB11G23120.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB11G23120.1; OB11G23120.1; OB11G23120. DR Gramene; OB11G23120.1; OB11G23120.1; OB11G23120. DR Proteomes; UP000006038; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 162 AA; 17853 MW; E4AE1B17C2F3DF31 CRC64; MARIPATIFA VVSGHVLYIY NNFTRISYSA KSNDAAQRRR QRASHELGTV DPNPDDAAAA RKLPGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGV AGGFYYSAGK DVQLFIDCKI RSKQSAMSAF LRAMVATPTA PAVKAIRLFG IDLLTGGGAR AK // ID J3NBI4_ORYBR Unreviewed; 339 AA. AC J3NBI4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G13420.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G13420.1}; RN [1] {ECO:0000313|EnsemblPlants:OB12G13420.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G13420.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB12G13420.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB12G13420.1; OB12G13420.1; OB12G13420. DR Gramene; OB12G13420.1; OB12G13420.1; OB12G13420. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000006038; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 37749 MW; C7E1A7CB9064B29E CRC64; MAMHPLAQGH QAWPWGVAMY TNLHYHHHHH EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLSGDSGE KGLLLSFEDE SGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KRLDAGDVVY FERVRGSFGV GDRLFIGCRR RGDAAQTPAP PAVRVVPAGQ KXXXXXXXXX XXXXXXXXXX XXXXXXXXES APATAVAAPP PPAVRVPPPT LNAGEQQPWS PMCYSTSGSS YPTSPANSYA YHRSLDQDHS DILHAGESQR DADTKSSSAA SAPPSTRRLR LFGVNLDCGP EPEADQTTAM YGYMHHQSPY AAVSAVPNYW SVLSAIKEYP RCRIKLAEN // ID J3NDE4_ORYBR Unreviewed; 752 AA. AC J3NDE4; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G20020.1}; RN [1] {ECO:0000313|EnsemblPlants:OB12G20020.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G20020.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB12G20020.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB12G20020.1; OB12G20020.1; OB12G20020. DR Gramene; OB12G20020.1; OB12G20020.1; OB12G20020. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006038; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 624 708 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 60 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 752 AA; 83271 MW; C00FB60462F68ECD CRC64; MNVELKAEPD TDEVYAQLTL LPEKQQDGNG NGNGNASKDQ VDEEAAAPPA AAERPRVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSQHPPTQEL VAKDLHGVEW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGD NGELRVGVRR AMRQQANIPS SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPSEFV VPRDLYEESL KRNHSIGMRF KMTFEGEEAA EQRFTGTIVG IGDSDPSGWA DSKWRSLKVR WDDAASIPRP DRVSPWQIEP ANSPSPPNPP QATRTKRARP NVISSSSDLS AVNKEVASKV IANSQQNGLT RAFHSQESTN LRSRFGDSSE LNTSQKLTMW SSGSNQEKNN AIVQRELGSQ SWMQMRRPDS SSEILSGFQP QKDTRNPLSS FPSQISGNRS NTWNTINVHY PDQNVNHNMF PGTWSFMPPN TAFGVNQQSY LMPPDIPLPQ RSLNAKFSGN GAFTSLRAHG IDQRSSGWPG HIEPSSHIDD ASLSLIKPQP LVIDHNVQKA KGSSCMLFGI SLDSPAKPEQ LISPPSVAFD GKLQQDALEE DECSDPSKTL KPLDGAQHDS ATEKHQSCPE GARNIQTKHN GSSRSCKKVH KQGIALGRSI DLTKFTCYDE LITELDQMFD FNGELSSSCK NWMVVYTDNE GDMMLVGDDP WNEFCNMVHK IFIYTREEVQ KMNPGALNSR SEDSRSTSME RGLVGEGLQG GLSTPSLNSE NC // ID J3NEL8_ORYBR Unreviewed; 488 AA. AC J3NEL8; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G24260.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G24260.1}; RN [1] {ECO:0000313|EnsemblPlants:OB12G24260.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G24260.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB12G24260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB12G24260.1; OB12G24260.1; OB12G24260. DR Gramene; OB12G24260.1; OB12G24260.1; OB12G24260. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR OMA; EYLPRES; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000006038; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 334 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 485 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 334 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 485 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 488 AA; 56044 MW; D11143D156B47B3C CRC64; MMEKSHSACK NCVIDHYWHH MDDHGKSFIK VMIGDFKNGL TIPEKFAQNF RGHIPETINL ETRNGNRYKV RLVKELNNLV LRSGWAKFAS AYELEKGDIL VFIYSGNSHF KVWIYDPSAC EKELSCANME QFPYVQERSI SYDNHTRLRK KAKSANRYVD SSSYSRETLE ISPARSSWKS TENVSSSEEH DEPVNSDCTQ KPTKSFCDLP RMCSMTNAQK AEVNALEKKI QPQIPFYITT IDKASVTNGS LTISKDYAVR YLLHENETIK LCHSGRSMTW DISLDIETDD QYAISTGWLD FIRDNHLQEG DTCVFEASKN KREVALIFHP LKQSLHSKPP GYAPSTRCPR NGISKPNYIV TKFTTLSGKL EREVEAKVQA IQSEIPIFVA VMRDSCIRGN ASVLCFNAKY AAEYLPRESK TMRLLLPKKK YKCKVAFQIN HRVHKLVGGW RKFIGDNKLK VGDVCLFQLM KNEKLTMLVH IIRKSEYC // ID J3NEL9_ORYBR Unreviewed; 336 AA. AC J3NEL9; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G24270.1}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G24270.1}; RN [1] {ECO:0000313|EnsemblPlants:OB12G24270.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G24270.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB12G24270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; OB12G24270.1; OB12G24270.1; OB12G24270. DR Gramene; OB12G24270.1; OB12G24270.1; OB12G24270. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000006038; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 38665 MW; 203ADF9DE6A1DB90 CRC64; MAEKGCESCS KWQEHYYREH MDVSRIRFFK LLTGDFAHGI SIPEKVAEVF SGQITKGFKL KSPSGETWRV GIEKVADELL IMSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLMFD ASGCEKMCCF FTGKKDSYMC KHFDSRGGQN AEQCLSTDSE DTSTPSHLIR SPYSTSKKSS GKTKTNPRNA PENPNSSRCH VKREMFEEEK SGDNDDNGDD EHVDHHYSRL ANYLTSEERE EIFSLIVPSK FAADHLENRS HEILLIRPNK KEKWYVKYYH GSTNRGFNCH RWIKFMRENR LREGYICIFE LMKGARRVTM TVHVIGKVGN RFVLLG // ID J3NEZ7_ORYBR Unreviewed; 897 AA. AC J3NEZ7; DT 03-OCT-2012, integrated into UniProtKB/TrEMBL. DT 03-OCT-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Oryza brachyantha. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G25550.1}; RN [1] {ECO:0000313|EnsemblPlants:OB12G25550.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G25550.1}; RX PubMed=23481403; RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., RA Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., RA Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., RA Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., RA Jackson S.A., Wing R.A., Wang J., Chen M.; RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms RT underlying Oryza genome evolution."; RL Nat. Commun. 4:1595-1595(2013). RN [2] {ECO:0000313|EnsemblPlants:OB12G25550.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_015698719.1; XM_015843233.1. DR STRING; 4533.OB12G25550.1; -. DR EnsemblPlants; OB12G25550.1; OB12G25550.1; OB12G25550. DR GeneID; 102716558; -. DR Gramene; OB12G25550.1; OB12G25550.1; OB12G25550. DR KEGG; obr:102716558; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; CENLPQR; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006038; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006038}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006038}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 764 848 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 897 AA; 99479 MW; A967DC56F7805193 CRC64; MKLSPSAAPD TLQALPENDG EQRCLNSELW HACAGPLVSL PMVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHEN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYPSLMWLR DGNRGAQTLN FQGHGISPWL QPRIDSPLLG VKTDTYQQMA AAALEEIRSG DNLKQPSATL QYQQTQNLNG GLNSLFASHV LQQMHYQTPQ SPLQAVQQGH CQNTGDSGFV QGQLTQLQLL KEQEFQQQQQ QQRQQILQEQ SHHEMPQQLP SSDPRIADVA SESGSATQAP SSLLNGSSFY HQNLLEGNRN PSLQLHNNFH NFSSQEASDI LSLPPSSQLM ASNGWPSKQL AVESIVHPEA QPMLPKIEKV NHHTSISHFP GTFPSQSARG CSVVQDCGAD ADNRLLSSSF ELQDGMTSII SDASRETDTM AIPLLRYNGA DLTTENTLAT SNCLGESGTF NHLNNVCVNP SQGATFVKVY KSGSLGRSLD ISRFSSYCEL RSELEHLFGL EGQLEDPVRS GWQLVFVDRE NDILLVGDDP WQEFANSVWC IKILSPQEVQ KLVRGGDGLL SSPGARIQQS NACDDYSASH NMQNIPGNIA SVAPLDY // ID K3XEM3_SETIT Unreviewed; 809 AA. AC K3XEM3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101758683 {ECO:0000313|EnsemblPlants:Si000340m}; GN ORFNames=SETIT_000340mg {ECO:0000313|EMBL:KQL08439.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000340m}; RN [1] {ECO:0000313|EMBL:KQL08439.1, ECO:0000313|EnsemblPlants:Si000340m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000340m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08439.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000340m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000340m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08439.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08439.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL08439.1; -; Genomic_DNA. DR RefSeq; XP_004971147.1; XM_004971090.3. DR STRING; 4555.Si000340m; -. DR EnsemblPlants; Si000340m; Si000340m; Si000340m.g. DR GeneID; 101758683; -. DR Gramene; Si000340m; Si000340m; Si000340m.g. DR KEGG; sita:101758683; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; K3XEM3; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 697 790 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 809 AA; 90776 MW; EA8284B54DF99453 CRC64; MPPAIMAPPP TPQAPSNSGD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVEASMN QVAGNQMRLY DLPSKLLCRV LNVELKAETD TDEVYAQIML MPEPEQNEVA AEKASSGSAA TPRPAVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNIPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESLK NNYSIGMRFR MRFEGEEAPE QRFTGTIVGC ENLDPLWPDS SWRYLKVRWD EPSTIPRPER VSPWKIEPAS SPPVNPLPVS SRVKRPRQNA PQPSPESSVL TKEGASKVDI GSAQTQHQNS VLQGQEQMTL RNNMNESTDS DATVQKPMMW SPSPNGKTHT SFQQRPSMDN WMPLGRRETD FKDNRSAFKD ARTSSQSFGD TQGFFMQTFD DNQHRLSFNN QFQDQGSAHR FADPYFFMPQ QPSLTVESST RTQTANNELR FWSDQNTVYG NTTDQQGFRY GQNPSNWLNQ PFPLVEQPRV VRPHASVAPF DLEKTREGSG FKIFGFKVDT ASASPIQLSS PMSAMREHVV QTQPSASVNE LQPVQTECLP EGSVSTAGTS TENEKSIQQA TQSSKDIQSK SQGASTRSCT KVHKQGVALG RSVDLSKFSD YDELKAELDK MFEFEGELVS ANKNWQIVYT DNEGDMMLVG DDPWEEFCSI VRKIYIYTKE EVQKMNSKSS APRKEEPPAA GEVCAATNE // ID K3XEU8_SETIT Unreviewed; 754 AA. AC K3XEU8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101758683 {ECO:0000313|EnsemblPlants:Si000415m}; GN ORFNames=SETIT_000340mg {ECO:0000313|EMBL:KQL08437.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000415m}; RN [1] {ECO:0000313|EMBL:KQL08437.1, ECO:0000313|EnsemblPlants:Si000415m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000415m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08437.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000415m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000415m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08437.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08437.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL08437.1; -; Genomic_DNA. DR EnsemblPlants; Si000415m; Si000415m; Si000340m.g. DR Gramene; Si000415m; Si000415m; Si000340m.g. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 754 AA; 84620 MW; 185D0804B7FC56FF CRC64; MPPAIMAPPP TPQAPSNSGD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVEASMN QVAGNQMRLY DLPSKLLCRV LNVELKAETD TDEVYAQIML MPEPEQNEVA AEKASSGSAA TPRPAVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNIPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESLK NNYSIGMRFR MRFEGEEAPE QRFTGTIVGC ENLDPLWPDS SWRYLKVRWD EPSTIPRPER VSPWKIEPAS SPPVNPLPVS SRVKRPRQNA PQPSPESSVL TKEGKFEIIS VSSVRVMKNT TLLMLFKLSV QFAGASKVDI GSAQTQHQNS VLQGQEQMTL RNNMNESTDS DATVQKPMMW SPSPNGKTHT SFQQRPSMDN WMPLGRRETD FKDNRSAFKD ARTSSQSFGD TQGFFMQTFD DNQHRLSFNN QFQDQGSAHR FADPYFFMPQ QPSLTVESST RTQTANNELR FWSDQNTVYG NTTDQQGFRY GQNPSNWLNQ PFPLVEQPRV VRPHASVAPF DLEKTREGSG FKIFGFKVDT ASASPIQLSS PMSAMREHVV QTQPSASVNE LQPVQTECLP EGSVSTAGTS TENEKSIQQA TQSSKDIQSK SQGASTRSCT KVPLFYLFMD ITCLYLCYPV CANE // ID K3XEZ7_SETIT Unreviewed; 724 AA. AC K3XEZ7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101758683 {ECO:0000313|EnsemblPlants:Si000464m}; GN ORFNames=SETIT_000340mg {ECO:0000313|EMBL:KQL08436.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000464m}; RN [1] {ECO:0000313|EMBL:KQL08436.1, ECO:0000313|EnsemblPlants:Si000464m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000464m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08436.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000464m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000464m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08436.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08436.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL08436.1; -; Genomic_DNA. DR EnsemblPlants; Si000464m; Si000464m; Si000340m.g. DR Gramene; Si000464m; Si000464m; Si000340m.g. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 724 AA; 81250 MW; BCAB5ECBCA4E90D1 CRC64; MPPAIMAPPP TPQAPSNSGD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVEASMN QVAGNQMRLY DLPSKLLCRV LNVELKAETD TDEVYAQIML MPEPEQNEVA AEKASSGSAA TPRPAVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNIPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESLK NNYSIGMRFR MRFEGEEAPE QRFTGTIVGC ENLDPLWPDS SWRYLKVRWD EPSTIPRPER VSPWKIEPAS SPPVNPLPVS SRVKRPRQNA PQPSPESSVL TKEGASKVDI GSAQTQHQNS VLQGQEQMTL RNNMNESTDS DATVQKPMMW SPSPNGKTHT SFQQRPSMDN WMPLGRRETD FKDNRSAFKD ARTSSQSFGD TQGFFMQTFD DNQHRLSFNN QFQDQGSAHR FADPYFFMPQ QPSLTVESST RTQTANNELR FWSDQNTVYG NTTDQQGFRY GQNPSNWLNQ PFPLVEQPRV VRPHASVAPF DLEKTREGSG FKIFGFKVDT ASASPIQLSS PMSAMREHVV QTQPSASVNE LQPVQTECLP EGSVSTAGTS TENEKSIQQA TQSSKDIQSK SQGASTRSCT KVPLFYLFMD ITCLYLCYPV CANE // ID K3XEZ9_SETIT Unreviewed; 723 AA. AC K3XEZ9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101758683 {ECO:0000313|EnsemblPlants:Si000466m}; GN ORFNames=SETIT_000340mg {ECO:0000313|EMBL:KQL08438.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000466m}; RN [1] {ECO:0000313|EMBL:KQL08438.1, ECO:0000313|EnsemblPlants:Si000466m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000466m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08438.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000466m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000466m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08438.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08438.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL08438.1; -; Genomic_DNA. DR EnsemblPlants; Si000466m; Si000466m; Si000340m.g. DR Gramene; Si000466m; Si000466m; Si000340m.g. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 723 AA; 81122 MW; 0158C22AFEF5B5C4 CRC64; MPPAIMAPPP TPQAPSNSGD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVEASMN QVAGNQMRLY DLPSKLLCRV LNVELKAETD TDEVYAQIML MPEPENEVAA EKASSGSAAT PRPAVRSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT QSPPTQELVA KDLHGMEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQLSNIPSSV ISSQSMHLGV LATAWHAINT KSMFTVYYKP RTSPSEFIIP YDQYMESLKN NYSIGMRFRM RFEGEEAPEQ RFTGTIVGCE NLDPLWPDSS WRYLKVRWDE PSTIPRPERV SPWKIEPASS PPVNPLPVSS RVKRPRQNAP QPSPESSVLT KEGASKVDIG SAQTQHQNSV LQGQEQMTLR NNMNESTDSD ATVQKPMMWS PSPNGKTHTS FQQRPSMDNW MPLGRRETDF KDNRSAFKDA RTSSQSFGDT QGFFMQTFDD NQHRLSFNNQ FQDQGSAHRF ADPYFFMPQQ PSLTVESSTR TQTANNELRF WSDQNTVYGN TTDQQGFRYG QNPSNWLNQP FPLVEQPRVV RPHASVAPFD LEKTREGSGF KIFGFKVDTA SASPIQLSSP MSAMREHVVQ TQPSASVNEL QPVQTECLPE GSVSTAGTST ENEKSIQQAT QSSKDIQSKS QGASTRSCTK VPLFYLFMDI TCLYLCYPVC ANE // ID K3XF30_SETIT Unreviewed; 704 AA. AC K3XF30; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL08268.1, ECO:0000313|EnsemblPlants:Si000497m}; GN Name=LOC101775161 {ECO:0000313|EnsemblPlants:Si000497m}; GN ORFNames=SETIT_000497mg {ECO:0000313|EMBL:KQL08268.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000497m}; RN [1] {ECO:0000313|EMBL:KQL08268.1, ECO:0000313|EnsemblPlants:Si000497m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000497m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08268.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000497m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000497m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08268.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08268.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL08268.1; -; Genomic_DNA. DR RefSeq; XP_004971015.1; XM_004970958.1. DR STRING; 4555.Si000497m; -. DR EnsemblPlants; Si000497m; Si000497m; Si000497m.g. DR GeneID; 101775161; -. DR Gramene; Si000497m; Si000497m; Si000497m.g. DR KEGG; sita:101775161; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; K3XF30; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 532 634 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 532 634 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 704 AA; 74405 MW; 95B00D492A96C1B0 CRC64; MDASAGSPPP HSQENPPEHG GDLGEAPAEE IGGEAGDDFL FAEDTFPSLP DFPCLSSPSS STFSSSSSSN SSSAYTNAAG GAGGGADGAA GERSGPASAG EGFDALDDID QLLDFASLSM PWDSEPTFPE VSMMLEDAMF APPHPVGDGR REGKAVLEGT GGEEACMDAA AAPGEDLPRF FMEWLTSNRE NISAEDLRSI RLRRSTIEAA AARLGGGRHG TMQLLKLILT WVQNHHLQRK RPRDAMEEAA VLHGHGQSQL SSPGVNTGYE FPAGGQDMAA GSGASWMPYQ QPFTPPAYGG DAVYPGAAGQ YPFHQSSSTS SVVVSSQPFS PPAVGDMHAA GGGNMAWPQQ YVPFPGASAG SYPMPPVVAQ PFSPGFGGQY GGAAHPMGPQ RMAGGEASAT KEARKKRMAR QRRLSCLQQQ RSQQLNLAQI QVPVHPQEPS PRSVHSAPVT PSGGGWGFWS PGSQQQVQNP LSKSNSSRAP MQQVPRSPEA PAEGAPPVNP APGARQEESP QRSTASDKRQ GAKSDKNLRY LLQKVLKQSD VGSLGRIVLP KKEAEVHLPE LKTRDGISIP MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GEFVRSNELQ EGDFIVIYSD VKSGKYLIRG VKVRPAHQDQ GNGSSAVGKN KHGSPGPEKA GGSSDDGIVI ADGTNKPDGA CKGRSQQGAR RARHQGAASM AVSI // ID K3XF71_SETIT Unreviewed; 687 AA. AC K3XF71; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101786343 {ECO:0000313|EnsemblPlants:Si000540m}; GN ORFNames=SETIT_000540mg {ECO:0000313|EMBL:KQL03205.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000540m}; RN [1] {ECO:0000313|EMBL:KQL03205.1, ECO:0000313|EnsemblPlants:Si000540m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000540m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL03205.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000540m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000540m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL03205.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL03205.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL03205.1; -; Genomic_DNA. DR RefSeq; XP_004967361.1; XM_004967304.3. DR STRING; 4555.Si000540m; -. DR EnsemblPlants; Si000540m; Si000540m; Si000540m.g. DR GeneID; 101786343; -. DR Gramene; Si000540m; Si000540m; Si000540m.g. DR KEGG; sita:101786343; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; K3XF71; -. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 589 671 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 687 AA; 76879 MW; 2B4495AC21EA9C65 CRC64; MAQGREPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV PNKILCKVVN VELKAETETD EMFAQITLQP DPDQVNLPTL PDPPLPETPR PVVHSFCKIL TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL LTTGWSTFVT SKKLIAGDAF VYLRSETGQQ RVGVRRLVQK QSAMPASVIS SQSMHLGVLA SASHAIKTNS IFLVYYRPRL SQSQYIVSLN KYLEASKIGF NVGMRFKMSF EGEDVPVKKF SGTVVDKGDL SPQWQGSEWK TLKVQWDEAT NLNGPERVSS WEIEPFDAST PTINIPVQQS TKNKRPRETA ESLDIQAMEP TQEFWLSGMP EQHEKAGIGS SEPNCISGHQ VVWTSERAGY SAMSSSVCQN SVVLGNWFKD FNSSSKGASP SLSEISQKLF QVTSNDARVP PWPGLSAYQA EEPSSKLSSN TALCSYQTEE VAPNFSNAVE EKKEPGMFRL FGVNLINHTR NAAASEKMTV GVREISTRTA GSLEDSGQLS ALSKVTKDHT QNVNESPREI QSHQNCTGRT RIKVQMQGNA VGRAIDLVNL HGYPQLISEL DEMFEIKDLS SKEKWKVAFT NDEGDTMEVG DVPWLKFCQT VRKIVIHPIE DESDMDPFLE QDVKTDF // ID K3XF76_SETIT Unreviewed; 685 AA. AC K3XF76; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101782847 {ECO:0000313|EnsemblPlants:Si000545m}; GN ORFNames=SETIT_000545mg {ECO:0000313|EMBL:KQL07011.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000545m}; RN [1] {ECO:0000313|EMBL:KQL07011.1, ECO:0000313|EnsemblPlants:Si000545m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000545m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL07011.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000545m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000545m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL07011.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL07011.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL07011.1; -; Genomic_DNA. DR EMBL; CM003532; KQL07013.1; -; Genomic_DNA. DR RefSeq; XP_012701823.1; XM_012846369.2. DR STRING; 4555.Si000542m; -. DR EnsemblPlants; Si000542m; Si000542m; Si000545m.g. DR EnsemblPlants; Si000545m; Si000545m; Si000545m.g. DR GeneID; 101782847; -. DR Gramene; Si000542m; Si000542m; Si000545m.g. DR Gramene; Si000545m; Si000545m; Si000545m.g. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 74769 MW; 089DACB35E75B9A9 CRC64; MGIDLNMVDV GGEDRRPPLG VCRELWHACA GPVVSLPRRG SLVVYLPQGH LAAAGGGDVT ADLPPHVVCR VADVELCADA ATDEVYARLA LVAEGEAFGR NVRGAGVEGD DDMEDLDAER KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF RHIYRGQPRR HLLTTGWSSF VHKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED FSSDSAKRHT LSDVYDSLEH RSVFHISYNP RATASEYIIP YRKFIKSLNR PVCIGARINF QCHNEDVSER RSGMVVGISE VDSVKWPGSK WRSLLVRWED GSECNGQDRV SPWEIEIVGG SVSVAHSLSA SSSKRTKLCP QGNLDVPTMY VAGNGCTDSV ETGKLPRVLQ GQELMGFRTH RVTCAPQTAE VAKFQSSDAS RFLTNARSCM LSGPTSRLAV QNTSFTYQSV GFNESIGFSE VLQGQEISQA VPMFQGMMSE ACSVKGGYGL RGYMRTPTTV DGLSATAQEC SLTLSTPPAA QVHSPHPNHM FNQTVASQLG LASKTAGEVG NSSQPRPFEM LWEAQTRSQH GRPGQISLDQ FETRRASAPG DAAKTGSGGR EVRKTSCRLF GFSLTEKILP ADDDSVKEVS YEAECQNPRM LDLFGYNRST PNAALPALCA APFGM // ID K3XF86_SETIT Unreviewed; 682 AA. AC K3XF86; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101782847 {ECO:0000313|EnsemblPlants:Si000555m}; GN ORFNames=SETIT_000545mg {ECO:0000313|EMBL:KQL07012.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si000555m}; RN [1] {ECO:0000313|EMBL:KQL07012.1, ECO:0000313|EnsemblPlants:Si000555m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si000555m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL07012.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si000555m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si000555m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL07012.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL07012.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL07012.1; -; Genomic_DNA. DR EMBL; CM003532; KQL07014.1; -; Genomic_DNA. DR RefSeq; XP_004969978.1; XM_004969921.3. DR EnsemblPlants; Si000554m; Si000554m; Si000545m.g. DR EnsemblPlants; Si000555m; Si000555m; Si000545m.g. DR GeneID; 101782847; -. DR Gramene; Si000554m; Si000554m; Si000545m.g. DR Gramene; Si000555m; Si000555m; Si000545m.g. DR KEGG; sita:101782847; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 74565 MW; 76F2839E97CBE59C CRC64; MGIDLNMVDV GGEDRRPPLG VCRELWHACA GPVVSLPRRG SLVVYLPQGH LAAAGGGDVT ADLPPHVVCR VADVELCADA ATDEVYARLA LVAEGEAFGR NVRGAGVEGD DDMEDLDAER KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF RHIYRGQPRR HLLTTGWSSF VHKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED FSSDSAKRHT LSDVYDSLEH RSVFHISYNP RATASEYIIP YRKFIKSLNR PVCIGARINF QCHNEDVSER RSGMVVGISE VDSVKWPGSK WRSLLVRWED GSECNGQDRV SPWEIEIVGG SVSVAHSLSA SSSKRTKLCP QGNLDVPTMW NGCTDSVETG KLPRVLQGQE LMGFRTHRVT CAPQTAEVAK FQSSDASRFL TNARSCMLSG PTSRLAVQNT SFTYQSVGFN ESIGFSEVLQ GQEISQAVPM FQGMMSEACS VKGGYGLRGY MRTPTTVDGL SATAQECSLT LSTPPAAQVH SPHPNHMFNQ TVASQLGLAS KTAGEVGNSS QPRPFEMLWE AQTRSQHGRP GQISLDQFET RRASAPGDAA KTGSGGREVR KTSCRLFGFS LTEKILPADD DSVKEVSYEA ECQNPRMLDL FGYNRSTPNA ALPALCAAPF GM // ID K3XJ36_SETIT Unreviewed; 370 AA. AC K3XJ36; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL04327.1, ECO:0000313|EnsemblPlants:Si001909m}; GN Name=LOC101759210 {ECO:0000313|EnsemblPlants:Si001909m}; GN ORFNames=SETIT_001909mg {ECO:0000313|EMBL:KQL04327.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si001909m}; RN [1] {ECO:0000313|EMBL:KQL04327.1, ECO:0000313|EnsemblPlants:Si001909m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si001909m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL04327.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si001909m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si001909m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL04327.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL04327.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL04327.1; -; Genomic_DNA. DR RefSeq; XP_004968155.1; XM_004968098.2. DR EnsemblPlants; Si001909m; Si001909m; Si001909m.g. DR GeneID; 101759210; -. DR Gramene; Si001909m; Si001909m; Si001909m.g. DR KEGG; sita:101759210; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; K3XJ36; -. DR KO; K09287; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 131 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 190 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 131 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 190 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 370 AA; 39778 MW; 594FE0A69E104CB4 CRC64; MGMESMCPTA AEGSSSATSS SSRSTGASTA TTESGAAQQQ QQQPQAAAAA GGGEASPADE QAVTSAAAAV AQGSSRYKGV VPQPNGRWGA QIYERHARVW LGTFPNEEAA ARAYDVAALR YRGREAATNF PGAGASAPEL AFLAAHSKAE IVDMLRKHTY ADELRQGLRR GRGMGARAQP TPAWARAPLF EKAVTPSDVG KLNRLVVPKQ HAEKHFPLKR APEATTGEGV LLNFEDGEGK VWRFRYSYWN SSQSYVLTKG WSRFVREKGL RAGDTIVFSH STYGQEKQLF IDCRKTKTAT TDAAPAPAAA PLEKPKEARV VVRLFGVDIT GDGCQKRARP VEMAFEQGQE FLKKQCVAHH RSPALGAFLL // ID K3XLD5_SETIT Unreviewed; 244 AA. AC K3XLD5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL06788.1, ECO:0000313|EnsemblPlants:Si002708m}; GN Name=LOC101779754 {ECO:0000313|EnsemblPlants:Si002708m}; GN ORFNames=SETIT_002708mg {ECO:0000313|EMBL:KQL06788.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si002708m}; RN [1] {ECO:0000313|EMBL:KQL06788.1, ECO:0000313|EnsemblPlants:Si002708m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si002708m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL06788.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si002708m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si002708m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL06788.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL06788.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL06788.1; -; Genomic_DNA. DR EnsemblPlants; Si002708m; Si002708m; Si002708m.g. DR Gramene; Si002708m; Si002708m; Si002708m.g. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR InParanoid; K3XLD5; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 244 AA; 27211 MW; F004453AB41FADD3 CRC64; MVPYRATPGD RQLQVACSNW TPEPAAGAVK TEVEDADELA LCVVIPAPTP PPQPQQDDPA PTRRRGPQPQ EDGGAVKTRS IHEHPQAAAA ALAAAAENIP ASVRRYKGYV SRRRPVTGAE RQRAMELAYA FRSSLPYCVV RMSTMHVYYS FMMRFPTGFS RQHLPRERTD VVLRDPGGKA WVVLYIPNTR DRLSRGWCAF ARGNCLEEGD YCVFELVGAA EFRVHVFRVA EPPVPAVRLR ERLA // ID K3XQF5_SETIT Unreviewed; 652 AA. AC K3XQF5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL08211.1, ECO:0000313|EnsemblPlants:Si004140m}; GN Name=LOC101776389 {ECO:0000313|EnsemblPlants:Si004140m}; GN ORFNames=SETIT_004140mg {ECO:0000313|EMBL:KQL08211.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si004140m}; RN [1] {ECO:0000313|EMBL:KQL08211.1, ECO:0000313|EnsemblPlants:Si004140m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si004140m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08211.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si004140m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si004140m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08211.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08211.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL08211.1; -; Genomic_DNA. DR STRING; 4555.Si004140m; -. DR EnsemblPlants; Si004140m; Si004140m; Si004140m.g. DR Gramene; Si004140m; Si004140m; Si004140m.g. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; K3XQF5; -. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 176 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 550 645 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 83 176 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 550 645 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 652 AA; 71664 MW; A3231105919C08F6 CRC64; MVELIGGGAL KKEPEEAVVE IDSEEEEAGK VVKRRRRRKK KACDPHQKRA CVDCTKRCAR IHGRAASSSP SPSSSKARPL PAVPSFFKVM MGYFSDDMDI PPPFARTILD LAGSNIYLED AFGFRWRVRL CLSDGVLSFG HGWKNFVLDH AVSCGEFLVF RQIARSVFTV QMFAPSAVER LFLCERNKRQ SRKRKPRQKA SSPSIQTVKT SKNSVENRKK KQRTDHHSDL GPKDCQMPDH VCLDDSDVPN SASEPKCSET SGGLPEVGVA EPQEDSEAPT RHEREGQEVL DGEAEIADDC TIFEEKESEC NARVTEHLVS DATEIELGEG LNLPTNADVI GPLAMMDLNE ENIDDIFLSA DIYEFGTDVC NPEAFSVDLN MEGPITTAQT SGFSCLEDAS QNHHSSMGVG QSYVMPAETL SCSENKEMTD ALETGSGYAC VAVHDIDINE LPATEPSPFA ENSSPPADIE VHSGEFALSG CNQVKKDKQQ DGQGDRQAST GQNTAEVISS GIMLHEHPHL SQNLHQTDKS EGLQSEIFES GGVLALAAAC SKFCIAVPAP GQTWLELPNR LPVIPRTKKQ GRKVVILKDP CMRLWPVLYQ CTPRFSGFIT GWVDICRENN LQEGDTCEFE LSGNSELSFQ VVLRSLHVAT ND // ID K3XRB8_SETIT Unreviewed; 290 AA. AC K3XRB8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL06691.1, ECO:0000313|EnsemblPlants:Si004459m}; GN Name=LOC101754102 {ECO:0000313|EnsemblPlants:Si004459m}; GN ORFNames=SETIT_004459mg {ECO:0000313|EMBL:KQL06691.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si004459m}; RN [1] {ECO:0000313|EMBL:KQL06691.1, ECO:0000313|EnsemblPlants:Si004459m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si004459m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL06691.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si004459m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si004459m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL06691.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL06691.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL06691.1; -; Genomic_DNA. DR RefSeq; XP_004969734.1; XM_004969677.1. DR STRING; 4555.Si004459m; -. DR EnsemblPlants; Si004459m; Si004459m; Si004459m.g. DR GeneID; 101754102; -. DR Gramene; Si004459m; Si004459m; Si004459m.g. DR KEGG; sita:101754102; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; K3XRB8; -. DR OMA; SMDMANP; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 32352 MW; 70444C9D0AA901EF CRC64; MAGISKRRTS PVSSSSSSGD GMPRRITRKP RSARRGPRGA IRRPPAPRPV NELDLNTAAL DPDHYATGLR VLLQKELRNS DVSQLGRIVL PKKEAESYLP TLISKDGRSL CMYDLLNAQL WTFKYRYWPN NKSRMYVLEN TGDYVKAHDL RQGDFIVIYK DDGNDRFVIG AKKAGYEQTA TVPQIHQHMH LSATLPAPQV FHDYAAPVAP EADMLAIVPQ ADEIFDGILN SLPEIPVANM RYSDFFDPFG DSMDMANPLG PNHSVNLATH FHDEKTGSSS FPYPKSGPLM // ID K3XRQ4_SETIT Unreviewed; 667 AA. AC K3XRQ4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101759755 {ECO:0000313|EnsemblPlants:Si004598m}; GN ORFNames=SETIT_004598mg {ECO:0000313|EMBL:KQL06344.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si004598m}; RN [1] {ECO:0000313|EMBL:KQL06344.1, ECO:0000313|EnsemblPlants:Si004598m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si004598m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL06344.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si004598m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si004598m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL06344.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL06344.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL06344.1; -; Genomic_DNA. DR STRING; 4555.Si004598m; -. DR EnsemblPlants; Si004598m; Si004598m; Si004598m.g. DR Gramene; Si004598m; Si004598m; Si004598m.g. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; K3XRQ4; -. DR OMA; QSPRLYE; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 73749 MW; 067B0F8BC95C8004 CRC64; MAGIDLNTVE EEDEEAETPL GLREGGTVCL DLWHACAGPV APLPRKGSAV VYLPQGHLEH IGGDAAPAAV PPHVFCRVVD VNLHADDATD EVCARVSLLP EDEEAERRAR ARAREDEDAA RYGEGGGAMR PLARTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SLQRPSQELV AKDLHGTEWK FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGED GVLRLGVRRA AQLKNVNLIP APHNQCSNHR NLGNVTEAVA TRTVFHIYYN PRLSQSEFII PYWKFMRSFN QPFSVGMRCR MRYESDDASE RRCTGIIIGS REAEPMWHGS KWKSLVDLKL ICAPPNSKRL KPCLPQVNPE IVLPYGSVSS DFAGSARFHK VLQGQEFLGF KTHDVTAISA SHATEARNLQ DSDERSSYIN MSNNIFGVPR FGVRSPAGIP RFPYHCSGFG ESQRFQKVLQ GQEVFRPFRG GALADVHIRT VGMYQPDGTH ASSAAYKWPT PQGCDIRHPT KPVLLQASSP SSVLMFPQTS SKIPHLEYEY SCLDEDEDGR RDRAVPTQDM GRSNQALSLW PHLVSGEAID ECTVTEKMHS PVSGAEHESN NESTVENGCK IFGISLAEQV RSCDEADSCN ANCNSRLQPS QSQMQSLGTC WATVSAS // ID K3XSS7_SETIT Unreviewed; 298 AA. AC K3XSS7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL06097.1, ECO:0000313|EnsemblPlants:Si004979m}; GN Name=LOC101759094 {ECO:0000313|EnsemblPlants:Si004979m}; GN ORFNames=SETIT_004979mg {ECO:0000313|EMBL:KQL06097.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si004979m}; RN [1] {ECO:0000313|EMBL:KQL06097.1, ECO:0000313|EnsemblPlants:Si004979m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si004979m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL06097.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si004979m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si004979m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL06097.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL06097.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL06097.1; -; Genomic_DNA. DR EnsemblPlants; Si004979m; Si004979m; Si004979m.g. DR Gramene; Si004979m; Si004979m; Si004979m.g. DR eggNOG; ENOG410JSU0; Eukaryota. DR eggNOG; ENOG41108H5; LUCA. DR InParanoid; K3XSS7; -. DR OMA; PRQCAEG; -. DR OrthoDB; EOG09360NOS; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 33275 MW; 0814C92E839E3272 CRC64; MAFLATRLSR EMEVQMEKAA LCENPFHMVN PFLSRLYVSP WVSMSTPILP SGLSNSHGRL GLWGAGMRGR QVIEIEFLFS KILTPSDVGK QNRLLIPKKF AEKYFPKISK TKSYREEQIL AFEDSSTGLV WHFRFSLWRS SNTYVLTKGW PSFTKEKKLS NGDTVSFYRS ADKSKGTNCI FIHIKPHVGI SSVPHHSAVP MFTPSGLLNE TDKCVCEGLG LGSGYRFEPT WKHLSFGSGG LTPPITLMPQ PTMFPESMSL DNSMGRAQKR LRLFGVDIDV PPRASGDDSC NGWTNGVA // ID K3XSX9_SETIT Unreviewed; 734 AA. AC K3XSX9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL06790.1, ECO:0000313|EnsemblPlants:Si005032m}; GN Name=LOC101780961 {ECO:0000313|EnsemblPlants:Si005032m}; GN ORFNames=SETIT_005032mg {ECO:0000313|EMBL:KQL06790.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si005032m}; RN [1] {ECO:0000313|EMBL:KQL06790.1, ECO:0000313|EnsemblPlants:Si005032m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si005032m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL06790.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si005032m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si005032m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL06790.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL06790.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003532; KQL06790.1; -; Genomic_DNA. DR EnsemblPlants; Si005032m; Si005032m; Si005032m.g. DR Gramene; Si005032m; Si005032m; Si005032m.g. DR eggNOG; ENOG410JVSD; Eukaryota. DR eggNOG; ENOG41105MW; LUCA. DR InParanoid; K3XSX9; -. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000004995; Chromosome V. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 734 AA; 82650 MW; D244CE6EB4625AB5 CRC64; MTILSHHDFM SAIFSQVTQS GNSLQFVPNL ASALASSATV ILKNAEGKTW LVELEEIDGR VFLTSGWSKF VEGNCLGQGE FLVFEYDGNI HFRVSVFGAN AVEKAVWPSA SGAPPTGNLG GGEQPCDISP SSKRRHSGDE LTETVKSLMR RHAQVDILDH TQGDEHISAQ DTICFLDPHE VGCSKDELET SLSQKEPMED DKAKAIVEVM RTLHVDKLTV ELFCATLCLY KWKVEAAAED INICRGKPQI LEQSLKQKLV LQFDFVKSQL RHFFPPDVDS ERIKKNNLEG PNLSNQPLQC DLTVAPVKRR LVDEHKSCDL SHQHKRKTVK LQRGSPQPQT PRRSPRLAHL NNTCNNTNEV LKERAEGLKP PQAAKDQVKD RVHKAHSLHE KPDNSLKAVR EETTGSLSQD LRKLDPPQCE VGLSKENEHD QGETRKFLDH SNDRKNSEEQ MEINGVGTSE LFMSTDCIES SPNNSGLTAY SRINELSFTW KHSQHANPIE KILLDIQRGN FVNTITHIQK VIQDDPSNVL SADVIGAVVQ IGLLKCDLCL QDRNARKIVN ALLEYAKKVR EKHNFSIEMR KEEFSAKLQD LLKWQLKELE TTYTSLESDY KKATTDSTIS FSTLEEHRKK LHAIKDGMKD SQQALMIRED EIQKLAHKVA EHETICQKSL MEKVRVKTAL NSYQKTLGDV KEQLASTEPG FVDVDALVKV EMDNMSTEIQ LSKGILLNIN FEKE // ID K3XUY4_SETIT Unreviewed; 1084 AA. AC K3XUY4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101755948 {ECO:0000313|EnsemblPlants:Si005741m}; GN ORFNames=SETIT_005741mg {ECO:0000313|EMBL:KQL11740.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si005741m}; RN [1] {ECO:0000313|EMBL:KQL11740.1, ECO:0000313|EnsemblPlants:Si005741m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si005741m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL11740.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si005741m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si005741m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL11740.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL11740.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL11740.1; -; Genomic_DNA. DR STRING; 4555.Si005741m; -. DR EnsemblPlants; Si005741m; Si005741m; Si005741m.g. DR Gramene; Si005741m; Si005741m; Si005741m.g. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; K3XUY4; -. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 951 1035 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 536 563 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1084 AA; 120734 MW; 1D8AD5807C0BEFBC CRC64; MQKDVDGHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQPRPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDAT WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA LYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGSKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQNSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QILQQNSIQF SSSKLPQQMQ PVNELSKATL PLNQLGMGTK LQEQIHDPSN LQRQQQSMNQ LLPLSQSQTN LVQAQVLVQN QMQQQQQPPS MTQNQQPAAS QPQLLPHPQQ QQQQQQQQQQ QQQQKLLHQQ QQLLLQQQQL QQQQQNQQQL NKMAAQVPNL AAQQLQLSDQ QLQLQLLQKL QQQQQSLLSQ PAVTLAQLPL IQEQQKLILD MQQQLSNSQS LSQQQTMPQQ STKVPSQATP PPPPSMQQEP QQKVPQKHVG FTDTSHAAIP PTTSVNAISA AGSSMMANGA AHSVLTEEIP SCSTSPSTAN GNHLAQPILG RNQQCGMINN EKLPQSTAPM SIPSSLEAVT GIPRSTKELP KLNSNVKQSV MASKLPNTGP IPQNLVNSAP PTDYLETASS ATSVWLSQAD GLLHQGFPMS NFNQQQIFKD APPETDIQGT DPSNNALFGI NNDGQLGFPM GADAFLSNGI DASKYQNHIS TDIDGNYRIP KDGQQEISSS MVSQSFGASD MAFNSIDSGM NDGGFLNRTS WPPAAPLKRM RTFTKVYKRG AVGRSIDISH YSGYDELKHA LARMFSIEGQ LEEQQRIGWK LVYKDHEDDI LLLGDDPWEE FVNCVRCIRI LSPQEVQQMS LDGDLGNNIL PNQACSSSDG GNAWRARCDQ NSGNPSTGSY DQFE // ID K3XUZ6_SETIT Unreviewed; 1054 AA. AC K3XUZ6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101783358 {ECO:0000313|EnsemblPlants:Si005753m}; GN ORFNames=SETIT_005753mg {ECO:0000313|EMBL:KQL09361.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si005753m}; RN [1] {ECO:0000313|EMBL:KQL09361.1, ECO:0000313|EnsemblPlants:Si005753m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si005753m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL09361.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si005753m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si005753m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL09361.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL09361.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL09361.1; -; Genomic_DNA. DR RefSeq; XP_004964586.1; XM_004964529.3. DR STRING; 4555.Si005753m; -. DR EnsemblPlants; Si005753m; Si005753m; Si005753m.g. DR GeneID; 101783358; -. DR Gramene; Si005753m; Si005753m; Si005753m.g. DR KEGG; sita:101783358; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; K3XUZ6; -. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 939 1032 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1054 AA; 116392 MW; B2AA7CDB0EF5EDAC CRC64; MKDPGSGGVT PSPAEGDKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRHASR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR YMGTITGIGD LDPIRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLGD DFALKDVQNA LFPGLSLVQW MAMQQNPQML TAAAPAVQSQ YLTSNALGMQ DGIGGVNEDP AKRLSMQAQN IGLPNLQAGS KVDHPAITSL AQQQQQQHPI LQQQQVQPLQ QNSAILQQQQ AQLLQQNAIH LQQQQEQLQR QHSQPPQQLK ATASLQPMDQ HKLKEQQPSG GQAVSQAQLL NQILQPSSSQ IQQLGLPKSP TQRPGLPGLT TMGSLPQPQL TQTPQLQQTA EYQQALLQSQ QPQLQQLSQS ELQLQLLQKI QQQNLLSQLN PQHQSQLIQQ LSQKSQEILQ QQVLQHQLGG ADTMGQLKHL QQTPLNHMTG SMTPQQLVRS HSALAESEEP SSSTAPSGSR VSPINSLSRA QQGSRNLPEI PSTPHIEHLL QEIQSKSDNR IKNDIQGSKE TVHAPNRHPA SDQLDASSAT SFCLDESPRE GFSFPPVCLD STAQVDPRDN FLIAENVDTL MPDALLSRGM SSGKGICNLP TGQRDHRDVE NELSSAAFSS QSFGVPDMSF KPGCSSDVAV ADGGMASQGL WNSQTQRMRT FTKVQKRGSV GRSIDITRYR GYEDLRHDLA CMFGIQGQLE DPYRTDWKLV YVDHENDILL VGDDPWEEFV SCVKSIKILS SAEVQQMSLD GDLGCIPPQG QACSASDDAN AWRG // ID K3XV45_SETIT Unreviewed; 931 AA. AC K3XV45; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101765679 {ECO:0000313|EnsemblPlants:Si005802m}; GN ORFNames=SETIT_005802mg {ECO:0000313|EMBL:KQL11994.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si005802m}; RN [1] {ECO:0000313|EMBL:KQL11994.1, ECO:0000313|EnsemblPlants:Si005802m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si005802m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL11994.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si005802m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si005802m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL11994.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL11994.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL11994.1; -; Genomic_DNA. DR STRING; 4555.Si005802m; -. DR EnsemblPlants; Si005802m; Si005802m; Si005802m.g. DR Gramene; Si005802m; Si005802m; Si005802m.g. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; K3XV45; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 152 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 798 882 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 152 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 931 AA; 102782 MW; 4C8FBE0E5DA1B2EF CRC64; MRLSSSSGSV LPAQAGSPEA VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQN SKNSPFFTQV LGEFPLQVAA STNKEMESQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLNPQ ELKDPYLPAE LGSANKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFTQQPPCQ ELIAKDLHGN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NDNNQLLLGI RRASRPQTVM PSSVLSSDSM HIGLLAAAAH AASTNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRISVG MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSPFPLRLKR PWPTGLPSLH GGKDDDLTNS LMWLRDTANP GFQSLNFGGL GVNPWMQPRL DASLLGLQPD MYQAMATAAF QDPTKQVSPT ILQFQQPQNI AGRAAPLLSS QILQQVQPQF QQQPYLQNIS ESTIHGQGQA ELLKQQIQRS HSFNEQKPQL QPQQQQQESQ QQSQCLQVPQ HQQMQQQNNM TNYQSVSNAL SAFSQLSSAP QSSPVALQTI LPFSQAQSFA ETNMSSLSPS NATAMQNTLR PFSAEAASQL SMPRPTAVPV ADPWSSKRVA VESLLPSRPQ VTSQMEQLNS APPSIPQSSA LAPLPGRGCL DQDVNSDPQN HLLFGVSIDS QSLLMQGGIP GLQNGNDSTA IPYSTSNFLS PSQNDFSLDH TLNSSGCLDD AGYVPCSDNS DQVNRLPATF VKVYKSGTYG RSLDITRFSS YHELRRELGR LFGLEGQLED PMRSGWQLVF VDREEDVLLV GDDPWQEFVS TVSCIKILSP QEVQQMGKQG LELLSSAAPA RRLGSSCDDY VSRQESRSLS TGIASVGSVE F // ID K3XV55_SETIT Unreviewed; 913 AA. AC K3XV55; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101765679 {ECO:0000313|EnsemblPlants:Si005812m}; GN ORFNames=SETIT_005802mg {ECO:0000313|EMBL:KQL11993.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si005812m}; RN [1] {ECO:0000313|EMBL:KQL11993.1, ECO:0000313|EnsemblPlants:Si005812m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si005812m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL11993.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si005812m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si005812m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL11993.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL11993.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL11993.1; -; Genomic_DNA. DR RefSeq; XP_004966207.1; XM_004966150.2. DR EnsemblPlants; Si005812m; Si005812m; Si005802m.g. DR GeneID; 101765679; -. DR Gramene; Si005812m; Si005812m; Si005802m.g. DR KEGG; sita:101765679; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 780 864 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 913 AA; 100746 MW; 71BDB218AE88A5AE CRC64; MRLSSSSGSV LPAQAGSPEA VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP CQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRASRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD SVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT NSLMWLRDTA NPGFQSLNFG GLGVNPWMQP RLDASLLGLQ PDMYQAMATA AFQDPTKQVS PTILQFQQPQ NIAGRAAPLL SSQILQQVQP QFQQQPYLQN ISESTIHGQG QAELLKQQIQ RSHSFNEQKP QLQPQQQQQE SQQQSQCLQV PQHQQMQQQN NMTNYQSVSN ALSAFSQLSS APQSSPVALQ TILPFSQAQS FAETNMSSLS PSNATAMQNT LRPFSAEAAS QLSMPRPTAV PVADPWSSKR VAVESLLPSR PQVTSQMEQL NSAPPSIPQS SALAPLPGRG CLDQDVNSDP QNHLLFGVSI DSQSLLMQGG IPGLQNGNDS TAIPYSTSNF LSPSQNDFSL DHTLNSSGCL DDAGYVPCSD NSDQVNRLPA TFVKVYKSGT YGRSLDITRF SSYHELRREL GRLFGLEGQL EDPMRSGWQL VFVDREEDVL LVGDDPWQEF VSTVSCIKIL SPQEVQQMGK QGLELLSSAA PARRLGSSCD DYVSRQESRS LSTGIASVGS VEF // ID K3XV62_SETIT Unreviewed; 904 AA. AC K3XV62; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101765679 {ECO:0000313|EnsemblPlants:Si005819m}; GN ORFNames=SETIT_005802mg {ECO:0000313|EMBL:KQL11995.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si005819m}; RN [1] {ECO:0000313|EMBL:KQL11995.1, ECO:0000313|EnsemblPlants:Si005819m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si005819m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL11995.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si005819m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si005819m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL11995.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL11995.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL11995.1; -; Genomic_DNA. DR EnsemblPlants; Si005819m; Si005819m; Si005802m.g. DR Gramene; Si005819m; Si005819m; Si005802m.g. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 780 862 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 904 AA; 99861 MW; 89382AD926C983F0 CRC64; MRLSSSSGSV LPAQAGSPEA VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP CQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRASRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD SVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT NSLMWLRDTA NPGFQSLNFG GLGVNPWMQP RLDASLLGLQ PDMYQAMATA AFQDPTKQVS PTILQFQQPQ NIAGRAAPLL SSQILQQVQP QFQQQPYLQN ISESTIHGQG QAELLKQQIQ RSHSFNEQKP QLQPQQQQQE SQQQSQCLQV PQHQQMQQQN NMTNYQSVSN ALSAFSQLSS APQSSPVALQ TILPFSQAQS FAETNMSSLS PSNATAMQNT LRPFSAEAAS QLSMPRPTAV PVADPWSSKR VAVESLLPSR PQVTSQMEQL NSAPPSIPQS SALAPLPGRG CLDQDVNSDP QNHLLFGVSI DSQSLLMQGG IPGLQNGNDS TAIPYSTSNF LSPSQNDFSL DHTLNSSGCL DDAGYVPCSD NSDQVNRLPA TFVKVYKSGT YGRSLDITRF SSYHELRREL GRLFGLEGQL EDPMRSGWQL VFVDREEDVL LVGDDPWQYV LMTVLMIPSE QSMLMFYTFP YIGAHCNLQG IREYGILHKD TLAAGGAADG QAGA // ID K3XVN3_SETIT Unreviewed; 686 AA. AC K3XVN3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101784034 {ECO:0000313|EnsemblPlants:Si005991m}; GN ORFNames=SETIT_005991mg {ECO:0000313|EMBL:KQL11928.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si005991m}; RN [1] {ECO:0000313|EMBL:KQL11928.1, ECO:0000313|EnsemblPlants:Si005991m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si005991m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL11928.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si005991m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si005991m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL11928.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL11928.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL11928.1; -; Genomic_DNA. DR RefSeq; XP_004966254.1; XM_004966197.2. DR RefSeq; XP_004966255.1; XM_004966198.3. DR RefSeq; XP_004966256.1; XM_004966199.3. DR STRING; 4555.Si005991m; -. DR EnsemblPlants; Si005991m; Si005991m; Si005991m.g. DR GeneID; 101784034; -. DR Gramene; Si005991m; Si005991m; Si005991m.g. DR KEGG; sita:101784034; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; K3XVN3; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 599 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 74697 MW; 6E3BACBC402C92F3 CRC64; MITFVDSAAM ERERESDKCM DPQLWHACAG GMVQMPAVHS KVYYFPQGHA EHAQGPVELP AGQVPALVLC RVAAVRFMAD PDTDEVFAKI RLAPVRPNES GYAADAEDAI GAAAGGQEDK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPEFLHQPP PPGGNYGGFS MFLRGDEDGN KMMATRGKVR VRVRPEEVVE ASKLAVSGQP FEVVYYPRAS TPEFCVKAGA VRAAMRTQWC AGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP PRKKLCVPLY PELPLEGQFP TPMFHGSPLG RGVGPMCYFP DGTPAGIQGA RHAQFGISLS DLHLNKLQSS LSPHGLHHLD HGMQPRIAAG LIIGHPAARD DISCLLTIGT PQNKKSDVKK APPQLMLFGK PILTEQQISL GTGGGFPLST PKRSPSDDNA EKTVSNSDIS SPGSNQDGTS SGGAPSCQDN KVLDLGLETG HCKVFMQSED VGRTLDLSDV GSYEELYQRL ADMFGIEKAE LMSHVFYRDA SGALKHTGDK PFSEFTKTTR RLTILTDTAS SDSLAR // ID K3XZI1_SETIT Unreviewed; 185 AA. AC K3XZI1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL08978.1, ECO:0000313|EnsemblPlants:Si007342m}; GN Name=LOC101782002 {ECO:0000313|EnsemblPlants:Si007342m}; GN ORFNames=SETIT_007342mg {ECO:0000313|EMBL:KQL08978.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si007342m}; RN [1] {ECO:0000313|EMBL:KQL08978.1, ECO:0000313|EnsemblPlants:Si007342m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si007342m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08978.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si007342m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si007342m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08978.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08978.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL08978.1; -; Genomic_DNA. DR EnsemblPlants; Si007342m; Si007342m; Si007342m.g. DR Gramene; Si007342m; Si007342m; Si007342m.g. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; K3XZI1; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 165 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 165 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 185 AA; 20287 MW; 33F90B6C648F55DD CRC64; METPGFPSTS KQQPDPDGST KFKIEAGGIK PKVEPCEEEE EHLPPLPPPV SDDDWEVTPL SGEHPFFTTV LSKSQVQKQF QLVIPARLHR HLPEARVPAT LLCRGRSWAA SYCGDLKCKK IDAAWRDFAV DNGLRVGDAC VFELVTPAAG DGEEVVFRVQ VLRGDLPEEI TSKGATSDEP LVIVD // ID K3Y2K3_SETIT Unreviewed; 353 AA. AC K3Y2K3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL11330.1, ECO:0000313|EnsemblPlants:Si008427m}; GN Name=LOC101774478 {ECO:0000313|EnsemblPlants:Si008427m}; GN ORFNames=SETIT_008427mg {ECO:0000313|EMBL:KQL11330.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si008427m}; RN [1] {ECO:0000313|EMBL:KQL11330.1, ECO:0000313|EnsemblPlants:Si008427m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si008427m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL11330.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si008427m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si008427m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL11330.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL11330.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL11330.1; -; Genomic_DNA. DR EnsemblPlants; Si008427m; Si008427m; Si008427m.g. DR Gramene; Si008427m; Si008427m; Si008427m.g. DR eggNOG; ENOG410JQPS; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; K3Y2K3; -. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 113 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 321 353 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 113 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 321 353 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 353 353 {ECO:0000313|EMBL:KQL11330.1}. SQ SEQUENCE 353 AA; 39050 MW; 3AE299CC1C6363EC CRC64; MAPLVRRARP KYAAALLSPT CLHKLRVPGE FAAWLGGEAR AAAAVLLVSP LGKVWHADLR RAGGGGGPGP LQLAGGWAEF AAAHGVRAGW SVVFRLERRG WPPSGRVAAG KNRPRFIRVL NADDLEKMRI PDEFVQEHLT DTHPSSKRAM IFSPLGKFWR VELDRDQPGV LLGDGWVRFL TAHDLSEGNI LVFRYDDSMV FTVEVFMQSG CLKEYEAATA DMTDDAIGRQ ITVPQQGDKE LCVSPVKKKR KTRNENTCLA VYRKKPNHSP ISVKKAVSQK KLVSIEPRHS FTKRITGYNL TSLFAVKGSF CSSVGLAGAC EITLKTKMGN TRSWRVRFNT TNTYGYITGQ GWK // ID K3Y2S9_SETIT Unreviewed; 212 AA. AC K3Y2S9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL08949.1, ECO:0000313|EnsemblPlants:Si008509m}; GN ORFNames=SETIT_008509mg {ECO:0000313|EMBL:KQL08949.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si008509m}; RN [1] {ECO:0000313|EMBL:KQL08949.1, ECO:0000313|EnsemblPlants:Si008509m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si008509m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL08949.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si008509m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si008509m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL08949.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL08949.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003531; KQL08949.1; -; Genomic_DNA. DR EnsemblPlants; Si008509m; Si008509m; Si008509m.g. DR Gramene; Si008509m; Si008509m; Si008509m.g. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR InParanoid; K3Y2S9; -. DR OMA; IDCRRRA; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000004995; Chromosome IV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 23709 MW; 2385E87F9C021C8D CRC64; MALTLALESS SSSRGEGGGD GHGSCRPRES MFEKVVTPSD VGKLNRLVVP KHLAEKHLPL PGAAARAGGT VLCFHDARGG EAAWRFRYSY WSSSQSYVMT KGWSRYVRDK RLAAGDTVSF YRDGARLFID CRRIRRAGVV PAVPPRQPQQ AFFFHNQQQA AVQPQQHLVV APRVVVVDDE VEEARRRRCL RLFGVNLELE LRAEPLLLDL QL // ID K3Y5Q2_SETIT Unreviewed; 677 AA. AC K3Y5Q2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101779951 {ECO:0000313|EnsemblPlants:Si009541m}; GN ORFNames=SETIT_009541mg {ECO:0000313|EMBL:KQK98123.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si009541m}; RN [1] {ECO:0000313|EMBL:KQK98123.1, ECO:0000313|EnsemblPlants:Si009541m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si009541m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK98123.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si009541m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si009541m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK98123.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK98123.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK98123.1; -; Genomic_DNA. DR EnsemblPlants; Si009541m; Si009541m; Si009541m.g. DR Gramene; Si009541m; Si009541m; Si009541m.g. DR InParanoid; K3Y5Q2; -. DR OMA; DEPFCAF; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 590 668 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 677 AA; 72674 MW; 8E2309A51D3ABBA6 CRC64; MIDGGAAAEG GVSPQLWLAS AGSMCTVPPV GAAVYYFPQG HAEQASAAVD LPAAAVPPFV PCRVAAVRFM AEPHTDEVYA RIRLVPLRSG EPVVDVGDAA AAGGDQQPQQ PNQASFAKTL TQSDANNGGG FSVPRFCAET IFPELDYRAR PPVQSVYARD VHGVEWSFRH IYRGTPRRHL LTTGWSNFVN KKRLLAGDSV VFVREANGRI HVGLRRAKRG FGAGAGGDDG FAGWGDAFGA LQVRGNAGGG ARYPGGKVPP EDVVAAARLA AAGQPFEVVH YPRASTPEFC VRAAAVRASM QVPWCPGMRF KMAFETEDSS RISWFMGTIA GVKAADPTRW PQSPWRLLQV AWDEPELLQN VKRVCPWLVE QVSSMPNLHL PSFTPRKKPR IPEFPLEGQP LFDPGFPPAA HPLPPLAPHP RPHHDQNPHP HALVPLFPFP DGSAAAGIQG ARHAQFAPFF SDLHVGNLQQ GLLFCGFRPA DHHTTPPAPR ISTDLAIGIP PPPRQDAPRS PPSAASKKAD DDVKPARIML FGRAILTEEQ MNCNSPTSPG ATGEGAPKPD RDAEKGPNTP DGSGSGVTEG SPTKNNLWEP GQCKVFVKSD SVGRNLDLSA LGTFDELYAR LAAMFRFDNA DLRSHVLYRT ATGEEKHVGD EPFSAFVKSV RRITIRSDAG SDSTGSQ // ID K3Y5R9_SETIT Unreviewed; 663 AA. AC K3Y5R9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101783298 {ECO:0000313|EnsemblPlants:Si009558m}; GN ORFNames=SETIT_009558mg {ECO:0000313|EMBL:KQK97374.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si009558m}; RN [1] {ECO:0000313|EMBL:KQK97374.1, ECO:0000313|EnsemblPlants:Si009558m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si009558m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK97374.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si009558m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si009558m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK97374.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK97374.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK97374.1; -; Genomic_DNA. DR RefSeq; XP_004975691.1; XM_004975634.2. DR STRING; 4555.Si009558m; -. DR EnsemblPlants; Si009558m; Si009558m; Si009558m.g. DR GeneID; 101783298; -. DR Gramene; Si009558m; Si009558m; Si009558m.g. DR KEGG; sita:101783298; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR InParanoid; K3Y5R9; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 663 AA; 73424 MW; 396366FC57FD58E8 CRC64; MAAAMDVANP GAAASSGMSS DALYRELWHA CAGPLVTVPR QGERVYYFPQ GHMEQLEAST HQQLDQYLPM FNLPSKILCS VVNVELRAEA DSDEVYAQIM LQPEADQSEL TSPDPELQEP EKCTAHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMS QNPPCQELVA KDLHGTEWHF RHIFRGQPKR HLLTTGWSVF VSSKRLVAGD AFIFMRGENG ELRVGVRRLM RQVNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSDFIVS VNKYLEAKKQ KISVGMRFKM RFEGDEAPER RFSGTIVDIG SLPAMSKSLW ADSDWRSLKV QWDEPSSILR PDRISPWEVE PLDAANPQSP QPPLRNKRAR PLASPSMVAE LPSGFGLWKS PTDSARTLSF SEPQRARELF PSIPPSAFSS SSNVSFNSKN EPSMLSSQFY WSARDTRADS CAASTNTVIV EKKQEPSSGG CRLFGIDICS AEEEVLPVVT APGLGYDQTA ASVELNSDKL SQLSDVNNSD AQAASSEPSP LESQSRQVRS CTKVIMQGMA VGRAVDLTKL SGYSDLCHKL EEMFDIQGEL GSTLKKWRVI YTDDEDDMML VGDDPWNEFC SMVKRIYICT YEEAKKLTSK SKLPGNSDTS KLSDVNSPSE WVI // ID K3Y7G4_SETIT Unreviewed; 432 AA. AC K3Y7G4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96770.1, ECO:0000313|EnsemblPlants:Si010155m}; GN Name=LOC101768344 {ECO:0000313|EnsemblPlants:Si010155m}; GN ORFNames=SETIT_010155mg {ECO:0000313|EMBL:KQK96770.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si010155m}; RN [1] {ECO:0000313|EMBL:KQK96770.1, ECO:0000313|EnsemblPlants:Si010155m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si010155m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96770.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si010155m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si010155m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96770.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96770.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96770.1; -; Genomic_DNA. DR EnsemblPlants; Si010155m; Si010155m; Si010155m.g. DR Gramene; Si010155m; Si010155m; Si010155m.g. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K3Y7G4; -. DR OMA; FVRDYIT; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 303 399 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 303 399 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 48331 MW; 2E8D614455A1722D CRC64; MPSSRSNAGA RAVAKQLKVL VPPSFHKMRI SDELAGCFDA GGGVGEGAPG GTALVVSPFG KVWRVEVGRD GDGAFLGRGW AGFLAAHGVG VGWFVVLRHE GGGALTFKAF DTSFCIKEFA APAAVMASRS RKGVSCKPQF IRIIYPNFTE KMIIPARFVK RYVTEEYLNS RTAVIFSPLG KFWQIELEND QSGMFFAGGW SQFLEFHGIS KGDVLLLRYE GNMVFKFKAF GLSGCQKDFK TKDAGINQNI EMQQESPSPI RKRKDNDEKS SSEKNKRPKS SVTSLNAKPS LKKPDYQIEP SSWIRKEINN TYMLERFLPL SIEFCRRIGF QNTCTITLKT EMDCTRSWKV RGVAYKSYCC IRGDVWKSFC QENRLKTGDL CTFNIIETTL WHVTIKRYTK KQKESPCSSR KEDKTKKGGS GSEGRTRAKG LH // ID K3Y837_SETIT Unreviewed; 373 AA. AC K3Y837; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96768.1, ECO:0000313|EnsemblPlants:Si010378m}; GN ORFNames=SETIT_010378mg {ECO:0000313|EMBL:KQK96768.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si010378m}; RN [1] {ECO:0000313|EMBL:KQK96768.1, ECO:0000313|EnsemblPlants:Si010378m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si010378m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96768.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si010378m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si010378m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96768.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96768.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96768.1; -; Genomic_DNA. DR EnsemblPlants; Si010378m; Si010378m; Si010378m.g. DR Gramene; Si010378m; Si010378m; Si010378m.g. DR InParanoid; K3Y837; -. DR OMA; HIEGKNE; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 130 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 311 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 130 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 311 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 41218 MW; 44E3E8E9F76DA135 CRC64; MASSSSGCHG AATAKHRCVL LRFTRDSLRI PDELAAEIAA EEALVVGSHS KVWRVGIGWD GDGALLGRGW RAFAAACGVE SGWFLVLRHR SRGLLTLKAF DDDRCLTELG AQTTAPAVEA TTNYKGASRK PQFINVFPTK SMGKMLIPAR FAQHYIPKDH LNNRMVIISG PLGKVCPIEL EMNQSSMFFA GGWSQFMAFH GITEADALLL SWQQEISSAS SRKCQSMNNW PDTDGQRRPK GFVTPSKKKK NKSSETNCAY DLGPPAWLTK KMNASMMSKH HLLHNPFACN SCSLYRAPFC NAIGFRKRCM ITLQDSMGST SSWQVRGLPY KNGGCQLGSG WKKVCQDTGL KYGDVITLKV IKTRLWDVII MRS // ID K3Y9F7_SETIT Unreviewed; 266 AA. AC K3Y9F7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK99630.1, ECO:0000313|EnsemblPlants:Si010849m}; GN Name=LOC101757782 {ECO:0000313|EnsemblPlants:Si010849m}; GN ORFNames=SETIT_010849mg {ECO:0000313|EMBL:KQK99630.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si010849m}; RN [1] {ECO:0000313|EMBL:KQK99630.1, ECO:0000313|EnsemblPlants:Si010849m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si010849m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK99630.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si010849m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si010849m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK99630.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK99630.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK99630.1; -; Genomic_DNA. DR RefSeq; XP_004977350.1; XM_004977293.1. DR STRING; 4555.Si010849m; -. DR EnsemblPlants; Si010849m; Si010849m; Si010849m.g. DR GeneID; 101757782; -. DR Gramene; Si010849m; Si010849m; Si010849m.g. DR KEGG; sita:101757782; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; K3Y9F7; -. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 266 AA; 29196 MW; A89097542535BA7F CRC64; MATHHLAQGH PQAWPWGVAM YTNLHYHQQQ YEREHLFEKP LTPSDVGKLN RLVIPKQHAE RYFPLGGAGG VASGDGSEKG LLLAFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKR LDAGDVVRFE RVRGGLGAGD RLFIGCRRRG ESAAPAPTPP PPVRAPAPAL NPGEQQPWSP MCYSTSGSSY PTSPASPYAY HSDMAHAGEA DAKSSGTPTA PSRKLRLFGV NLDCGPEPEP EAAMYGYMHQ SPYAAVSTVP NYWGSS // ID K3YBQ9_SETIT Unreviewed; 337 AA. AC K3YBQ9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96774.1, ECO:0000313|EnsemblPlants:Si011653m}; GN ORFNames=SETIT_011653mg {ECO:0000313|EMBL:KQK96774.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si011653m}; RN [1] {ECO:0000313|EMBL:KQK96774.1, ECO:0000313|EnsemblPlants:Si011653m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si011653m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96774.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si011653m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si011653m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96774.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96774.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96774.1; -; Genomic_DNA. DR EnsemblPlants; Si011653m; Si011653m; Si011653m.g. DR Gramene; Si011653m; Si011653m; Si011653m.g. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 37630 MW; 56719DEC919D726D CRC64; MPSSGDDGAA ASAKHLRLIP DELAQEIGAR EALVVGPLGG NGKVVWRVEL AEACGFAAGW LLVLRRRGRG VLTVKAFDDT RCLWDLGAPA PPAASTLLHS EKLQQAQYVS IQKHRRKNRT SIGRSSIYKI GPPSWIKKQI NTNTTSYFCQ QLLFHYGEIE ANIFIRSPLT TDNTCVLATA FCDAIGLWEP CTIMLRTSTE GNGSWVVRGL PCKGRSYLLV QGWRLFCQEN RLKEGDICTF NVIETTMWDV IITRHKEKMN QFCDVQQGTP KSKKYMSSTD AKKRVQGSMT YLNKARTKGA FEIGPPAWIK EINTSIIENQ QLVSTIVSIL MRVKSYK // ID K3YC79_SETIT Unreviewed; 409 AA. AC K3YC79; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK98593.1, ECO:0000313|EnsemblPlants:Si011823m}; GN Name=LOC101765487 {ECO:0000313|EnsemblPlants:Si011823m}; GN ORFNames=SETIT_011823mg {ECO:0000313|EMBL:KQK98593.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si011823m}; RN [1] {ECO:0000313|EMBL:KQK98593.1, ECO:0000313|EnsemblPlants:Si011823m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si011823m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK98593.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si011823m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si011823m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK98593.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK98593.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK98593.1; -; Genomic_DNA. DR RefSeq; XP_004976592.1; XM_004976535.2. DR EnsemblPlants; Si011823m; Si011823m; Si011823m.g. DR GeneID; 101765487; -. DR Gramene; Si011823m; Si011823m; Si011823m.g. DR KEGG; sita:101765487; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; K3YC79; -. DR OMA; DFRNINA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 43584 MW; 5ADD4AC737B59AD0 CRC64; MEFASSSSRF SKEEDEEEEQ EPEEEEEDEE ASPREIPFMT AAAAASSTGG GAASSSSSPT AAASASASGS AALRSSDGAG ASGSGGGGDD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAG DAARDRLFID WKRRADSRDP HRMPRLPLPM APVASPYGPW GGGAGGFFMP PAPPATLYEH HRFRQGLDFR NINAAAPARQ LLFFGSAGMP PRASMPPPPP PPPLHNIMMV QPSPAVTSGL PMVLDSVPLV NSPTAAAKRV RLFGVNLDNP QPSTGESSQD TDALSLRMPG WQRPGPLRFL ETPQHGGAVA AGAESSAASS PSSSSSSKRE AHSSLDLDL // ID K3YCW5_SETIT Unreviewed; 305 AA. AC K3YCW5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96760.1, ECO:0000313|EnsemblPlants:Si012066m}; GN ORFNames=SETIT_012066mg {ECO:0000313|EMBL:KQK96760.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012066m}; RN [1] {ECO:0000313|EMBL:KQK96760.1, ECO:0000313|EnsemblPlants:Si012066m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012066m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96760.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012066m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012066m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96760.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96760.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96760.1; -; Genomic_DNA. DR EnsemblPlants; Si012066m; Si012066m; Si012066m.g. DR Gramene; Si012066m; Si012066m; Si012066m.g. DR InParanoid; K3YCW5; -. DR OMA; NTLENHI; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 66 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 66 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK96760.1}. SQ SEQUENCE 305 AA; 35299 MW; BEF6EEE6D3452B0F CRC64; PEESSGCCFW SHGKIWKIEL EINQSDVFFA GGWSQFMVFH GITAANSLLF RYEGNMMFTV KVFEPNGCQR DSKHKQIGIQ QRSTLPNFEK QQEAPSSIKN CKSKSDWPSD ERQKIPKGSI QSKLVYEIGP PSWIKKVIDT NTLENHISLS TAFCDAIGLW GHFTIMLKIS INSTQSWKVH GASYKNSSYT LVLGWKRFFQ ENNLKEGDIC TFNIIKTTLW HVVITRFREN MNQFCYQETP EREKDWSCSD GQIRPKYSVT YLKQTKTKCV FEIGPPAWIR KEINAITIEK HLVSISIDMS KLEIW // ID K3YCY5_SETIT Unreviewed; 397 AA. AC K3YCY5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96772.1, ECO:0000313|EnsemblPlants:Si012086m}; GN Name=LOC101769150 {ECO:0000313|EnsemblPlants:Si012086m}; GN ORFNames=SETIT_012086mg {ECO:0000313|EMBL:KQK96772.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012086m}; RN [1] {ECO:0000313|EMBL:KQK96772.1, ECO:0000313|EnsemblPlants:Si012086m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012086m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96772.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012086m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012086m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96772.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96772.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96772.1; -; Genomic_DNA. DR RefSeq; XP_004977888.1; XM_004977831.1. DR EnsemblPlants; Si012086m; Si012086m; Si012086m.g. DR GeneID; 101769150; -. DR Gramene; Si012086m; Si012086m; Si012086m.g. DR KEGG; sita:101769150; -. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K3YCY5; -. DR OMA; QNGNNEH; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 317 397 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 317 397 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 397 AA; 44365 MW; 97854E7E574B96E8 CRC64; MPSSRSNAGA RAVAKQLKVL VPPSFHKMRI SDELAGCFDA GGGVGEGAPG GTALVVSPFG KVWRVEVGRD GDGAFLGRGW AGFLAAHGVG VGWFVVLRHE GGGALTFKAF DTSFCIKEFA APAAVMASRS RKGVSCKPQF IRIIYPNFTE KMIIPARFVK RYVTEEYLNS RTAVIFSPLG KFWQIELEND QSGMFFAGGW SQFLEFHGIS KGDILLLRYE GNMVFKFKAF GLSGCQKDFK NKDAGINQNI EMQQESPSPI RKRKDNDEKS SSEKNKTPKS SVTFLNAKPS LKKPDYQIEP SSWIRKEITT SMLECLLSLP MKFCRRIGFQ NTCTITLKTE MDSTRSWKVH GVAYKNYCCI RGDGWKSFCH ENRLKTGDLC TFNIIETTLW HVEIIRH // ID K3YD21_SETIT Unreviewed; 340 AA. AC K3YD21; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 12-APR-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96773.1, ECO:0000313|EnsemblPlants:Si012124m}; GN ORFNames=SETIT_012124mg {ECO:0000313|EMBL:KQK96773.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012124m}; RN [1] {ECO:0000313|EMBL:KQK96773.1, ECO:0000313|EnsemblPlants:Si012124m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012124m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96773.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012124m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012124m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96773.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96773.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96773.1; -; Genomic_DNA. DR EnsemblPlants; Si012124m; Si012124m; Si012124m.g. DR Gramene; Si012124m; Si012124m; Si012124m.g. DR InParanoid; K3YD21; -. DR OMA; HDITESN; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 181 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT DOMAIN 247 340 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 340 AA; 38362 MW; 9E6C080DD57FA6F7 CRC64; MTSPAAAAQH PRVLLRFTHN TLVRALARSA SPRSSPRRSA PTGGRARPWP LGVEWDGEGA FLGGGWREFA AACGVEPGWD TAHKPQFLRV FPKDFMGKML IPAKFVQWYI PKEHLLDNHM AIVSGPLGKV SHVELQMSQS EVFFGGGWSQ FLVLHDITES NALLLRYEGN MVFTVKVFEP DGCQRESKYK DIKMQQSEQK MNNMKRKREN DRSRCEVQKR PKGSMTSSYK ASSKAGCIFE IGPPAWVKKE INTCAIQNST LYLPPFFCKA IGIWEPCSIT LKTSMSSTMS WQARVIPYDH SSHHVNGLKR FYQDSGIKVG DVCTFIIIET TLWHVVIEPR // ID K3YD39_SETIT Unreviewed; 123 AA. AC K3YD39; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 12-APR-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96761.1, ECO:0000313|EnsemblPlants:Si012142m}; GN ORFNames=SETIT_012142mg {ECO:0000313|EMBL:KQK96761.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012142m}; RN [1] {ECO:0000313|EMBL:KQK96761.1, ECO:0000313|EnsemblPlants:Si012142m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012142m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96761.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012142m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012142m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96761.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96761.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96761.1; -; Genomic_DNA. DR EnsemblPlants; Si012142m; Si012142m; Si012142m.g. DR Gramene; Si012142m; Si012142m; Si012142m.g. DR InParanoid; K3YD39; -. DR OMA; PPADSME; -. DR OrthoDB; EOG09361FRO; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 96 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 123 AA; 12720 MW; 5897CB66E4A34032 CRC64; MASSGSHAAA AARKHLRVLL PFSDDSLRIP DELAGEIGAG EAHGKVRRVE VGRDGGGAFL GRGWPEFAAA CGVGAGWIVV LRHHGGGVLT VKAFDASCCL RELGTPPADS MEKMVRGLFT VVA // ID K3YDC4_SETIT Unreviewed; 261 AA. AC K3YDC4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK99246.1, ECO:0000313|EnsemblPlants:Si012228m}; GN ORFNames=SETIT_012228mg {ECO:0000313|EMBL:KQK99246.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012228m}; RN [1] {ECO:0000313|EMBL:KQK99246.1, ECO:0000313|EnsemblPlants:Si012228m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012228m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK99246.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012228m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012228m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK99246.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK99246.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK99246.1; -; Genomic_DNA. DR EnsemblPlants; Si012228m; Si012228m; Si012228m.g. DR Gramene; Si012228m; Si012228m; Si012228m.g. DR eggNOG; ENOG410JSZB; Eukaryota. DR eggNOG; ENOG41108C1; LUCA. DR InParanoid; K3YDC4; -. DR OMA; IDWKEIT; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 74 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 74 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 28023 MW; FCC187BE00F49FFE CRC64; MDGDDDAAAA SPRAQSSSRY KGVVPQPNAR WGAQIYERHA RVWLGTVADE AAAARAYDAA ALRFRGRGGA MAFLAARPKA EVVDMLRKHT YDDELRQALR SGGGGDHALA LVPRVALFEK AVTPSDLHAE KHFPPLDEAA PPVLLAFEDV AGGKVWRFRY SYWSSSQSYV LTRGWSCFVR EKGLVAGDTV AFSQAQAAVS SSTDDGEVDV KRRMFIECRK RKRNDGGAGH GDDCCADGGA RVVRLFGANI AAAAIGASCM C // ID K3YDR8_SETIT Unreviewed; 360 AA. AC K3YDR8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96771.1, ECO:0000313|EnsemblPlants:Si012375m}; GN ORFNames=SETIT_012375mg {ECO:0000313|EMBL:KQK96771.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012375m}; RN [1] {ECO:0000313|EMBL:KQK96771.1, ECO:0000313|EnsemblPlants:Si012375m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012375m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96771.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012375m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012375m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96771.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96771.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96771.1; -; Genomic_DNA. DR EnsemblPlants; Si012375m; Si012375m; Si012375m.g. DR Gramene; Si012375m; Si012375m; Si012375m.g. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K3YDR8; -. DR OMA; DTACIRE; -. DR OrthoDB; EOG09361FRO; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 39542 MW; 42273BFA91B9A5FF CRC64; MASSGPGKQG TATAKKHLRV LLPFSREALR IPDELAGEIG AAEALVVGPA GGKVKFWSVE VGKDGDGAFL GRGWPEFAEA CGVGTGWLLV LRHRGRGVLS AKAFDATCCF RELGAPAPPA KDPPISHCKG STHKPQFIRV LPKDFMEKML IPAKFVEQHI PMELLDNRTA IVFGPSGKVY SIKLKMGWAG VFFAGGWSQF LKFHDITEAN ALLLRYEGNM VFTLKVYGPN GYQREFNHKE NRGSMASLKN ASSRAQGVYV IGPPAWLKKE ISTRMIKICI SFPAAFCNAI GLREACTVTL KTSLSSTSSW QVRVLPYKDT SHQVGSGWKS FCEENMIKEG DLCTFNVIEM MLWHVIIDRC // ID K3YE69_SETIT Unreviewed; 389 AA. AC K3YE69; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96769.1, ECO:0000313|EnsemblPlants:Si012530m}; GN ORFNames=SETIT_012530mg {ECO:0000313|EMBL:KQK96769.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012530m}; RN [1] {ECO:0000313|EMBL:KQK96769.1, ECO:0000313|EnsemblPlants:Si012530m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012530m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96769.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012530m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012530m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96769.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96769.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96769.1; -; Genomic_DNA. DR EnsemblPlants; Si012530m; Si012530m; Si012530m.g. DR Gramene; Si012530m; Si012530m; Si012530m.g. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K3YE69; -. DR OMA; NDETARW; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 309 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 309 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 389 AA; 42650 MW; 2AEE4DE2F59DC0A9 CRC64; MASSGPGKQG TATAKKHLRV LLPFSRDALR IPDELAGEIG AAEALVVGPA GGKVKFWSVE VGKDGDGAFL GRGWPEFAEA CGVGTGWLVL RHRGRGVLSA KAFDATCCFR ELGAPAPPAG EATASSKGST HKPQFIRVLP KDFMEKMLIP AKFVEQHIPM ELLDNRTAIV FGRSGKVYSI KLEMGWTGVF LAGGWSQFLK FHDITEANAL LLRYEGNMVF TLKVYGPNGY QREFNHKKTE VDKEQHETPF TSSSKRKSRN ESLSSDDQNK QKGSMASLKN ASSCAQGVYV IGPPAWLKEI STRMIKICIS FPAAFCNAIG LREACTVTLK TSLSSTSSWQ VRVLPYKDTS HQVGSGWKSF CEENMIKEGD VCTFNVIEMM LWHVVIDRC // ID K3YEB3_SETIT Unreviewed; 126 AA. AC K3YEB3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK96957.1, ECO:0000313|EnsemblPlants:Si012575m}; GN Name=LOC101766847 {ECO:0000313|EnsemblPlants:Si012575m}; GN ORFNames=SETIT_012575mg {ECO:0000313|EMBL:KQK96957.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si012575m}; RN [1] {ECO:0000313|EMBL:KQK96957.1, ECO:0000313|EnsemblPlants:Si012575m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si012575m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK96957.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si012575m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si012575m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK96957.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK96957.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003534; KQK96957.1; -; Genomic_DNA. DR STRING; 4555.Si012575m; -. DR EnsemblPlants; Si012575m; Si012575m; Si012575m.g. DR Gramene; Si012575m; Si012575m; Si012575m.g. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; K3YEB3; -. DR OMA; NDEYWPL; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000004995; Chromosome VII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK96957.1}. SQ SEQUENCE 126 AA; 13813 MW; 67F19DF9F9B68149 CRC64; IVPLLGKPYF TCIMCKSHVH PPFQVVVPRS LAPFLPDATV PATVTWRGRS WEMRFTGGRQ IQRLEAGWRG FALDNGLRLG DGCVLELVDG NPEGVVFRAQ VLRADIPAAI RERAGGYTSS APILID // ID K3YFY7_SETIT Unreviewed; 1099 AA. AC K3YFY7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101766553 {ECO:0000313|EnsemblPlants:Si013155m}; GN ORFNames=SETIT_013155mg {ECO:0000313|EMBL:KQL02511.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si013155m}; RN [1] {ECO:0000313|EMBL:KQL02511.1, ECO:0000313|EnsemblPlants:Si013155m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si013155m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL02511.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si013155m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si013155m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL02511.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL02511.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003533; KQL02511.1; -; Genomic_DNA. DR RefSeq; XP_004973925.1; XM_004973868.2. DR STRING; 4555.Si013155m; -. DR EnsemblPlants; Si013155m; Si013155m; Si013155m.g. DR GeneID; 101766553; -. DR Gramene; Si013155m; Si013155m; Si013155m.g. DR KEGG; sita:101766553; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; K3YFY7; -. DR OMA; SHSFGVA; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000004995; Chromosome VI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 981 1065 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1099 AA; 121652 MW; 8014A404358CCC0E CRC64; MAAPGTSSGG AGGEGGGGGT KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMG KDADAKIPSY PNLPSKLICI LNSVTMHADT DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPH LDFSMQPPAQ ELQARDLHDS IWTFRHIYRG QPKRHLLTTG WSLFVSGKKL LAGDSVLFIR DARQQLLLGI RRANRQPVNL SSSVLSSDSM HIGILAAAAH AAANNSQFTV FYNPRASPSE FVIPFAKYQK AVYSNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNI QVAWDEAAPS ERRTRVSLWD IEPVIAPFFI YPSPLFTAKR PRQPGITDDE TADMENLFKR TMPWFGEEIY KKDLNTQNNL VPGLSLVQWM QQNPSLTSTV VQPELLNSLA GKPVQTLAAA DMSRQISFQP QFLQQNNIQF NTSLLPPQNQ QTEQLAKVIA TPNQSGSVIV SQKVVQDCNP EQKQHAITQP VQGSQPMISA AQPQFVVQNQ LQQPQVILQA QAQQPQVILQ AQIQQQQPLV QNHTVLHGDL QQAQLLQQQE PHLQQQPQQV QQSVQEQQQI KIQPVQVLNG TNVITQLSDH QMKIQLLKAL QPQQPLIMEQ QKMILDLQHQ MVNSNSQSAA QQCAQVTTQA GGMHSSNTIQ YPTQQKTQPH QPIQDFPRHA VSVANPEIAT SMGTRSLHVP GGVQLLKTED VPSSSTSPPT NNNPVLLQSV PCSSKNQSIL TAAKTPQSSA VVGPTLGQGM KPYESAQQMV MIPKGAEQKP VTRQDYVNNT PQMDYLDTSS SATSVCLSQA DGSLHQNFPP SSFNQHQLLR ETVPDSEFEV TDPGNNFLFG VNIDGHLDSL NADALLANNF ETEKYMDHMP GHGISNYISS KDSQQELSSS MISHSFGVAD IAFNSIDSSI NDAPFLNRNS RPPAPAHQRI RTYTKVHKRG AVGRSIDINR YSGYDELKHD VARMFGIEGQ LSDQNRGGWK LVYEDHEKDV LLVGDDPWED FVNCVRCIRI LSPQEEMQMR LASDFGDSFL HNQACSSSDG GHPWRVTGD // ID K3YFZ0_SETIT Unreviewed; 1096 AA. AC K3YFZ0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101766553 {ECO:0000313|EnsemblPlants:Si013158m}; GN ORFNames=SETIT_013155mg {ECO:0000313|EMBL:KQL02510.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si013158m}; RN [1] {ECO:0000313|EMBL:KQL02510.1, ECO:0000313|EnsemblPlants:Si013158m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si013158m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL02510.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si013158m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si013158m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL02510.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL02510.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003533; KQL02510.1; -; Genomic_DNA. DR EnsemblPlants; Si013158m; Si013158m; Si013155m.g. DR Gramene; Si013158m; Si013158m; Si013155m.g. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000004995; Chromosome VI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 978 1062 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1096 AA; 121323 MW; 62AF3E19145D4E57 CRC64; MAAPGTSSGG AGGEGGGGGT KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMG KDADAKIPSY PNLPSKLICI LNSVTMHADT DTDEVYARMT LQPVSNCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPHLDF SMQPPAQELQ ARDLHDSIWT FRHIYRGQPK RHLLTTGWSL FVSGKKLLAG DSVLFIRDAR QQLLLGIRRA NRQPVNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTVFYN PRASPSEFVI PFAKYQKAVY SNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNIQVA WDEAAPSERR TRVSLWDIEP VIAPFFIYPS PLFTAKRPRQ PGITDDETAD MENLFKRTMP WFGEEIYKKD LNTQNNLVPG LSLVQWMQQN PSLTSTVVQP ELLNSLAGKP VQTLAAADMS RQISFQPQFL QQNNIQFNTS LLPPQNQQTE QLAKVIATPN QSGSVIVSQK VVQDCNPEQK QHAITQPVQG SQPMISAAQP QFVVQNQLQQ PQVILQAQAQ QPQVILQAQI QQQQPLVQNH TVLHGDLQQA QLLQQQEPHL QQQPQQVQQS VQEQQQIKIQ PVQVLNGTNV ITQLSDHQMK IQLLKALQPQ QPLIMEQQKM ILDLQHQMVN SNSQSAAQQC AQVTTQAGGM HSSNTIQYPT QQKTQPHQPI QDFPRHAVSV ANPEIATSMG TRSLHVPGGV QLLKTEDVPS SSTSPPTNNN PVLLQSVPCS SKNQSILTAA KTPQSSAVVG PTLGQGMKPY ESAQQMVMIP KGAEQKPVTR QDYVNNTPQM DYLDTSSSAT SVCLSQADGS LHQNFPPSSF NQHQLLRETV PDSEFEVTDP GNNFLFGVNI DGHLDSLNAD ALLANNFETE KYMDHMPGHG ISNYISSKDS QQELSSSMIS HSFGVADIAF NSIDSSINDA PFLNRNSRPP APAHQRIRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLSD QNRGGWKLVY EDHEKDVLLV GDDPWEDFVN CVRCIRILSP QEEMQMRLAS DFGDSFLHNQ ACSSSDGGHP WRVTGD // ID K3YJE3_SETIT Unreviewed; 242 AA. AC K3YJE3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL00732.1, ECO:0000313|EnsemblPlants:Si014362m}; GN Name=LOC101777088 {ECO:0000313|EnsemblPlants:Si014362m}; GN ORFNames=SETIT_014362mg {ECO:0000313|EMBL:KQL00732.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si014362m}; RN [1] {ECO:0000313|EMBL:KQL00732.1, ECO:0000313|EnsemblPlants:Si014362m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si014362m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL00732.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si014362m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si014362m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL00732.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL00732.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003533; KQL00732.1; -; Genomic_DNA. DR RefSeq; XP_004974419.1; XM_004974362.3. DR EnsemblPlants; Si014362m; Si014362m; Si014362m.g. DR GeneID; 101777088; -. DR Gramene; Si014362m; Si014362m; Si014362m.g. DR KEGG; sita:101777088; -. DR eggNOG; ENOG410JS8F; Eukaryota. DR eggNOG; ENOG41116NU; LUCA. DR InParanoid; K3YJE3; -. DR OMA; FNVECSG; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000004995; Chromosome VI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 157 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 157 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 34 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 242 AA; 26413 MW; C24F71419F5AF8E3 CRC64; MYMDLSLGTL VEDTQEVQEE HQEEEQEDDL YQQRALGQDL QHGGGEPSHA TEREHMFDKV LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFEDRGGV PWRFRYSYWG SSQSYVMTKG WSRFVRGARL AAGDTVSFSR VAAGGGSRYF IDYRHCQRRR HDISFGDAAA MPAAWPTVTR RGGATVAVDT ALVPVAGHGI EVGPTAGARS FRLFGFNVEC SGDDGAAASA ASAELEYVDG DS // ID K3YJI5_SETIT Unreviewed; 228 AA. AC K3YJI5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL00393.1, ECO:0000313|EnsemblPlants:Si014404m}; GN Name=LOC101778694 {ECO:0000313|EnsemblPlants:Si014404m}; GN ORFNames=SETIT_014404mg {ECO:0000313|EMBL:KQL00393.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si014404m}; RN [1] {ECO:0000313|EMBL:KQL00393.1, ECO:0000313|EnsemblPlants:Si014404m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si014404m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL00393.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si014404m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si014404m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL00393.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL00393.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003533; KQL00393.1; -; Genomic_DNA. DR STRING; 4555.Si014404m; -. DR EnsemblPlants; Si014404m; Si014404m; Si014404m.g. DR Gramene; Si014404m; Si014404m; Si014404m.g. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; K3YJI5; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000004995; Chromosome VI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 26430 MW; 03B6BC620BA995A8 CRC64; MAAEAVSYEE QRRRQVEANK RKLEELQLHH LSAAVREAAV KPSPAKKRKA RVPRDAAAEP LRRSGRVANL PDKPKYREEV LDFGRKVRRT YSSGRKDLDN RVYATDEERT HAITKAEELE EELGSRFPIF VKPMTQSHVT GGFWLGLPTP FCRKHLPKRD ETITLVDEED DESDTLYLAR KMGLSAGWRG FSIEHKLVDG DCLIFQLIER TKFKVYIIRA RSYYKNED // ID K3YMV3_SETIT Unreviewed; 334 AA. AC K3YMV3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL00132.1, ECO:0000313|EnsemblPlants:Si015586m}; GN Name=LOC101776130 {ECO:0000313|EnsemblPlants:Si015586m}; GN ORFNames=SETIT_015586mg {ECO:0000313|EMBL:KQL00132.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si015586m}; RN [1] {ECO:0000313|EMBL:KQL00132.1, ECO:0000313|EnsemblPlants:Si015586m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si015586m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL00132.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si015586m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si015586m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL00132.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL00132.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003533; KQL00132.1; -; Genomic_DNA. DR STRING; 4555.Si015586m; -. DR EnsemblPlants; Si015586m; Si015586m; Si015586m.g. DR Gramene; Si015586m; Si015586m; Si015586m.g. DR eggNOG; ENOG410JDZ5; Eukaryota. DR eggNOG; ENOG41116M3; LUCA. DR InParanoid; K3YMV3; -. DR OMA; KFIIRGE; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000004995; Chromosome VI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 227 327 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQL00132.1}. SQ SEQUENCE 334 AA; 36043 MW; DF4EAC4C1AC8E83C CRC64; NAVQNPDQSL HPSFPLPFHH VPLHHPAPPG APAAGPGADA AAAAPSTHNA APHSQPSRGF SDWSASNSAF ASVAAQPAPA TTTTTPFHYN LSQSYALWTH YMLNKNALPY TSYPAAPQDE NSHPLHHTHI PPDKDSGSAS SLGFDSFTTM SLGPNICAHM SPMEGSISAN EADNSEDLPT VVTNSDEMDT RNSDEVHPDS VATLPESKPS HESCTTKFNS GEYQVVLRKE LTKSDVANVG RIVLPKKDAE ASLPPLVQGD PLILQMDDMV LPVTWKFKYR FWPNNKSRMY ILEAAGEFVK THGLQAGDAL IIYKNSVPGK FIIRGEKAIQ QTNP // ID K3YPF5_SETIT Unreviewed; 1133 AA. AC K3YPF5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101785276 {ECO:0000313|EnsemblPlants:Si016147m}; GN ORFNames=SETIT_016147mg {ECO:0000313|EMBL:KQL28772.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si016147m}; RN [1] {ECO:0000313|EMBL:KQL28772.1, ECO:0000313|EnsemblPlants:Si016147m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si016147m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL28772.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si016147m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si016147m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL28772.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL28772.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL28772.1; -; Genomic_DNA. DR RefSeq; XP_004951920.1; XM_004951863.3. DR STRING; 4555.Si016147m; -. DR EnsemblPlants; Si016147m; Si016147m; Si016147m.g. DR GeneID; 101785276; -. DR Gramene; Si016147m; Si016147m; Si016147m.g. DR KEGG; sita:101785276; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; K3YPF5; -. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1000 1084 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1133 AA; 125421 MW; 7C9E4F99C7E2113F CRC64; MKQSPASSGV APAAAAASAG GAPPEGERKA PAINADLWYA CAGPLVSLPP VGSLVVYFPQ GHSEQVAASM QKDIDAHVPS YPNLPSKLIC LLHSVTLHAD PDTDEVYAQM TLQPVNTYGK EALQLSELAL KHARPQMEFF CKTLTASDTS THGGFSVPRR AAEKILPPLD FNMQPPAQEL QARDIHDTVW TFRHIFRGQP KRHLLTTGWS LFVGGKRLFA GDSVIFVRDE RQQLLLGIRR ASRQPTNISS SVLSSDSMHI GVLAAAAHAA ANNSPFTIFY NPRASPTEFV IPFAKYQKAL YSNQISLGMR FRMMFETEEL GMRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESAAGER RNRVSMWEIE PIAAPFFICP QPFFGVKRPR QLDDESSEME NLFKRAMPWL GEEICIKDAQ TQNTTMPGLS LVQWMNMNRQ QNSTLANTGI QSEYLRSLSN PAMQNLGATE LARQLYVQNH LLQQNSAQLN ASKLPQQMQP INELSKGVLS FNQLDVITNQ EQKQEAGNQQ RQQQASNQAI PLSQAQASLA QAQVIIQNQM QQQQQQHLSP TKNEQGTSDQ QLLLSQQQQD QNLQLQQHQQ LLLQQLQRQQ QHNQQLNKLP GQLVNLAGQQ TQLSDQELQL QLLQKLQQQA LISQPAVTLS RLPLIQEQQK LLLDMQQLSG SRSLAQQRIM PQQDSKVSLQ ASPSPPPMKP EQQQKLSQKQ VALADMSDVA FPSITPTNVV SKAGSSLMIP GAAQSVLTEE LPSCSTSPST ANGNHLAHPN IGRNDHCKVN TEKVPQSSAL MSIPTSVEAV TAAPVMAKEL LNHNVKENVI TSKSPTCGTG PDNLLNIVPS TDNLETASSA TSLWPTQTDG LLHQGFPTSN FNQQQMFKDA LPDVEIQDVD PTNNAFFGIS NDGPLGFPME TEGLLVSALN PVKCQTHMST DVENNYRIQK DAQQEISTSM VSQSFGQSDI AFNSIDSAIN DGALLNRNSW PPAPPPQRMR TFTKVYKRGA VGRSIDIGRY AGYEELKHAL ARMFGIEGQL EDRQRIGWKL VYKDHEDDIL LLGDDPWEEF VNCVKCIRIL SPQEVQQMSL DGDLGNNVLS NQACSSSDGG NAWRPRCDQN PGNPSIGFYD QFE // ID K3YPQ3_SETIT Unreviewed; 932 AA. AC K3YPQ3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL30332.1, ECO:0000313|EnsemblPlants:Si016245m}; GN Name=LOC101781250 {ECO:0000313|EnsemblPlants:Si016245m}; GN ORFNames=SETIT_016245mg {ECO:0000313|EMBL:KQL30332.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si016245m}; RN [1] {ECO:0000313|EMBL:KQL30332.1, ECO:0000313|EnsemblPlants:Si016245m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si016245m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL30332.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si016245m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si016245m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL30332.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL30332.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL30332.1; -; Genomic_DNA. DR RefSeq; XP_004952993.1; XM_004952936.2. DR EnsemblPlants; Si016245m; Si016245m; Si016245m.g. DR GeneID; 101781250; -. DR Gramene; Si016245m; Si016245m; Si016245m.g. DR KEGG; sita:101781250; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; K3YPQ3; -. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 379 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 833 931 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 286 379 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 833 931 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 932 AA; 104096 MW; E2E97C785DB70256 CRC64; MGKQKEGRAS SNKNMMADDR EKKNKTTTWN GHNKVKSSKK VSTTSLEKMR KKEKLCNANN KKKMQICDDE EGKNRKESTT ISERKDKEKM NKTHKEKMRA ANSKERKILS GHDGVKKSVE VSTAFFGKEK KGKRLNKTIN LELQSDEDEE EGVWNYDGKV KNGKVATAFS EEEKRKRRPN NNTEKETAAL TPAVKEKRMR PSESTEMMML HDKPNGRNVA SNVSKEKKMD TSSGSNYKKR KREEPDSLSK KEKRVWCNAS DKKIYSGTVQ EKKICGSGKE KNRQAPFTFF KFIYNYFEEF LLIPPAVAPK LEDLTNRDVY LEDSEKRRSK VRLSVVDGSL AFHQGWDIFV SDHLIKLGEF LLFEYTARKR FSVRIFGIDS CERLDFKKDP KRVEQGIGYG PPQDNNNGSL IDRQCKTKGT SPLHSKKKTV ILISDSGISA DNEDTLNITS DADSTHHVTI NTNKDLKRVQ SGVGNLPDGV CRTKCISPPC SEGKTSSEII VTGAAPLMHE NDGRVGHELE KHDLDEDLMR KQGINSIPSD SITAVGKHQN HSKTIVSQNI YRKYAAPGGF RCLEKWTKAI VNSPATLDGT VPIEPENTRK TGSILVDGYG SIGLNAGNEY FCSEDHHTLV LPVFTMPVKE PLSADRVSKF RHVGTDTDHS INEKGGGAAV QIQTQGEQLE PVGSIVISQS NNIPLSANTA VLGEYGALGR NPAGPEGTCA FVESMLTVPV EKPLSPDGIS KCGSSRTEID HNVNGKGTIV QLETNMDQVE LVGSSVCSQS SNVAMHANHV VVHEPEHYFS RQEGRKSANC AMTESLLPMK DKILELDGHS LLKFSLQLCV PDTTRKWLEL PKSLFDTVKQ KRHDRNVIML KDPTNRLWTV LYHENPVFVG LTAGWKHFVA GNNLQTGDLC KLTKEADGDE LVFSVQITKR RL // ID K3YPS0_SETIT Unreviewed; 907 AA. AC K3YPS0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101766262 {ECO:0000313|EnsemblPlants:Si016262m}; GN ORFNames=SETIT_016262mg {ECO:0000313|EMBL:KQL28606.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si016262m}; RN [1] {ECO:0000313|EMBL:KQL28606.1, ECO:0000313|EnsemblPlants:Si016262m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si016262m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL28606.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si016262m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si016262m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL28606.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL28606.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL28606.1; -; Genomic_DNA. DR RefSeq; XP_004951871.1; XM_004951814.3. DR STRING; 4555.Si016262m; -. DR EnsemblPlants; Si016262m; Si016262m; Si016262m.g. DR GeneID; 101766262; -. DR Gramene; Si016262m; Si016262m; Si016262m.g. DR KEGG; sita:101766262; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; K3YPS0; -. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 775 859 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 907 AA; 99699 MW; 374A1552B6405DCA CRC64; MKLSPSAAGG LQDQPASPEE AEENKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV AASTNKEMES QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGGASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGGRDDGLT SSLMWLRDGT NPSFQSLNFG GLGTSPSPWM QPRMDNSLLG LQSDMYQTIA AAAALQGTTK QISPSLMQFQ QPQNIVGRSA LLSNQIMQQV QPQFQQMYNQ NINDNTVQGH TQAEYLQQQL QRCHSFSEQK PQLHPQQQRQ ESQQQQECVQ TPQNQQLHCL PNALSAFSQL SSVTQSPSST LPAVPAFSHQ QNFADTNISA LSPSGGSSMQ GMLGQLPSDA PSSLPCVARN TPLSISDPWS SKRVAVESVN PSRPHVVSAQ IEQLDMTPCN LPQNSALAPL PGRGCLVDQD ESSDPQNHLL FGVNIDSQSL LMQGGIPGHQ NDNDSSTIPY STSNFLSPSQ NDFPLGQPLP STGCLDESSY VPSAENSEQA NQQFATFVKV YKSGTVGRLL DITRFSSYDE LRSEVGRLFG LEGQLEDPLR SGWQLVFVDG EDDVLLVGDD PWQEFVNSVS CIKILSLEEV QQMGKQGIEL LSSAPARRLS NGCDSYVSRQ ESKNLSTGMT PVGSVEF // ID K3YPY4_SETIT Unreviewed; 811 AA. AC K3YPY4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL30331.1, ECO:0000313|EnsemblPlants:Si016326m}; GN Name=LOC101781250 {ECO:0000313|EnsemblPlants:Si016326m}; GN ORFNames=SETIT_016245mg {ECO:0000313|EMBL:KQL30331.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si016326m}; RN [1] {ECO:0000313|EMBL:KQL30331.1, ECO:0000313|EnsemblPlants:Si016326m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si016326m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL30331.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si016326m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si016326m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL30331.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL30331.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL30331.1; -; Genomic_DNA. DR EnsemblPlants; Si016326m; Si016326m; Si016245m.g. DR Gramene; Si016326m; Si016326m; Si016245m.g. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 379 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 286 379 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 90134 MW; 8831C204C4B296FD CRC64; MGKQKEGRAS SNKNMMADDR EKKNKTTTWN GHNKVKSSKK VSTTSLEKMR KKEKLCNANN KKKMQICDDE EGKNRKESTT ISERKDKEKM NKTHKEKMRA ANSKERKILS GHDGVKKSVE VSTAFFGKEK KGKRLNKTIN LELQSDEDEE EGVWNYDGKV KNGKVATAFS EEEKRKRRPN NNTEKETAAL TPAVKEKRMR PSESTEMMML HDKPNGRNVA SNVSKEKKMD TSSGSNYKKR KREEPDSLSK KEKRVWCNAS DKKIYSGTVQ EKKICGSGKE KNRQAPFTFF KFIYNYFEEF LLIPPAVAPK LEDLTNRDVY LEDSEKRRSK VRLSVVDGSL AFHQGWDIFV SDHLIKLGEF LLFEYTARKR FSVRIFGIDS CERLDFKKDP KRVEQGIGYG PPQDNNNGSL IDRQCKTKGT SPLHSKKKTV ILISDSGISA DNEDTLNITS DADSTHHVTI NTNKDLKRVQ SGVGNLPDGV CRTKCISPPC SEGKTSSEII VTGAAPLMHE NDGRVGHELE KHDLDEDLMR KQGINSIPSD SITAVGKHQN HSKTIVSQNI YRKYAAPGGF RCLEKWTKAI VNSPATLDGT VPIEPENTRK TGSILVDGYG SIGLNAGNEY FCSEDHHTLV LPVFTMPVKE PLSADRVSKF RHVGTDTDHS INEKGGGAAV QIQTQGEQLE PVGSIVISQS NNIPLSANTA VLGEYGALGR NPAGPEGTCA FVESMLTVPV EKPLSPDGIS KCGSSRTEID HNVNGKGTIV QLETNMDQVE LVGSSVCSQS SNVAMHANHV VVHEPGCWIH SCRTLFLQTG R // ID K3YQG6_SETIT Unreviewed; 696 AA. AC K3YQG6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101786375 {ECO:0000313|EnsemblPlants:Si016509m}; GN ORFNames=SETIT_016509mg {ECO:0000313|EMBL:KQL30583.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si016509m}; RN [1] {ECO:0000313|EMBL:KQL30583.1, ECO:0000313|EnsemblPlants:Si016509m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si016509m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL30583.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si016509m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si016509m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL30583.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL30583.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL30583.1; -; Genomic_DNA. DR RefSeq; XP_004953169.1; XM_004953112.1. DR STRING; 4555.Si016509m; -. DR EnsemblPlants; Si016509m; Si016509m; Si016509m.g. DR GeneID; 101786375; -. DR Gramene; Si016509m; Si016509m; Si016509m.g. DR KEGG; sita:101786375; -. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR InParanoid; K3YQG6; -. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 610 690 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 74545 MW; 6FE805F6606774CD CRC64; MITFADLTEP AAAGADRCVD RQLWLACAGG MCTVPPVGTS VYYFPQGHAE HALGLAGAAD LSAARIPALV PCRVAAVRYM ADQDTDEVFA RIRLVPLRAG EADAGLEDDP AADDEQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYAADPPVQ TVVAKDVHGA AWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR GDGGDLHVGI RRAKRGFCGA GGGGGGGEEA LPMPGWDHYA GMMRGNVSPC GSAKARGKVR PEDVAEAARL ASAGQPFEVV YYPRASTPEF CVRVASVRAA MRVQWSPGMR FKMAFETEDS TRISWFMGTV AGVQVADPIR WPQSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSSIPAIH LASFSPPRKK PRIPAYPEFP FEGQLLNPAF PPTPLSHGHH GHHYLHTHPS FFPFPDGSAP AAIQGARHAQ FVPPLSDLHL THLQSSLLYP GLRRPDHVGR AAPIPARIST DLTIGGAPAR DDMSCALSIG ADKKQPGGAK PAGLVLFGRT ILTEQQMSLS GSAGATSPAA TGNGYMNWNA DKGPNASEGS GSGVIQNSPT KNASSSERPP WFTELAGLEP GQCKVFVESD TVGRNLDLSA LGSFDELYGR LSEMFCIESA ELRSRVLYRG AAGDVKHAGD EPFSVFVKSA RRITILTDAG SDNLGS // ID K3YQL6_SETIT Unreviewed; 674 AA. AC K3YQL6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101786375 {ECO:0000313|EnsemblPlants:Si016559m}; GN ORFNames=SETIT_016509mg {ECO:0000313|EMBL:KQL30582.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si016559m}; RN [1] {ECO:0000313|EMBL:KQL30582.1, ECO:0000313|EnsemblPlants:Si016559m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si016559m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL30582.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si016559m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si016559m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL30582.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL30582.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL30582.1; -; Genomic_DNA. DR EnsemblPlants; Si016559m; Si016559m; Si016509m.g. DR Gramene; Si016559m; Si016559m; Si016509m.g. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 610 674 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 72312 MW; 3E3F69EDF82BB502 CRC64; MITFADLTEP AAAGADRCVD RQLWLACAGG MCTVPPVGTS VYYFPQGHAE HALGLAGAAD LSAARIPALV PCRVAAVRYM ADQDTDEVFA RIRLVPLRAG EADAGLEDDP AADDEQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYAADPPVQ TVVAKDVHGA AWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR GDGGDLHVGI RRAKRGFCGA GGGGGGGEEA LPMPGWDHYA GMMRGNVSPC GSAKARGKVR PEDVAEAARL ASAGQPFEVV YYPRASTPEF CVRVASVRAA MRVQWSPGMR FKMAFETEDS TRISWFMGTV AGVQVADPIR WPQSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSSIPAIH LASFSPPRKK PRIPAYPEFP FEGQLLNPAF PPTPLSHGHH GHHYLHTHPS FFPFPDGSAP AAIQGARHAQ FVPPLSDLHL THLQSSLLYP GLRRPDHVGR AAPIPARIST DLTIGGAPAR DDMSCALSIG ADKKQPGGAK PAGLVLFGRT ILTEQQMSLS GSAGATSPAA TGNGYMNWNA DKGPNASEGS GSGVIQNSPT KNASSSERPP WFTELAGLEP GQCKVFVESD TVGRNLDLSA LGSFDELYGR LSEMFCIESA ELRSRVLYRG AAGDVKHAGD EPFR // ID K3YQM0_SETIT Unreviewed; 673 AA. AC K3YQM0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101765177 {ECO:0000313|EnsemblPlants:Si016563m}; GN ORFNames=SETIT_016562mg {ECO:0000313|EMBL:KQL30041.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si016563m}; RN [1] {ECO:0000313|EMBL:KQL30041.1, ECO:0000313|EnsemblPlants:Si016563m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si016563m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL30041.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si016563m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si016563m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL30041.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL30041.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL30041.1; -; Genomic_DNA. DR EMBL; CM003528; KQL30042.1; -; Genomic_DNA. DR RefSeq; XP_004952779.1; XM_004952722.2. DR STRING; 4555.Si016562m; -. DR EnsemblPlants; Si016562m; Si016562m; Si016562m.g. DR EnsemblPlants; Si016563m; Si016563m; Si016562m.g. DR GeneID; 101765177; -. DR Gramene; Si016562m; Si016562m; Si016562m.g. DR Gramene; Si016563m; Si016563m; Si016562m.g. DR KEGG; sita:101765177; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR KO; K14486; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 543 625 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 74918 MW; 2B15659E55D5F62B CRC64; MANAGAGAGG SGGVSDALFR ELWHACAGPL VTVPRQGELV YYFPQGHMEQ LEASTDQQLD QHLPLFNLPS KILCKVVNVE LRAETDSDEV YAQIMLQPEA DQNEPTSPNP EPPEPERCNV HSFCKTLTAS DTSTHGGFSV LRRHAEECLP QLDMSQNPPW QELVAKDLHG NEWHFRHIFR GQPRRHLLTT GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRLMRQLTN MPSSVISSHS MHLGVLATAS HAISTGTLFS VFYKPRTSRS EFVVSVNKYL EAKNHKMSVG MRFKMRFEGD ESPERRFSGT IIGLGSMPAN STSPWADSDW RSLKVQWDEP SAVLRPDRVS PWELEPLDAT NIQPPQPPLR NKRARPPASP SIAPELPPAF GFWKSPAEPT HAFSFSGLQR TQELYHSNPN SIFSSPLNEG FNSKNERSTP TNNHLYWPVR DMRTESYSAS INKPPPERKQ ESVTAGCRLF GIEISNAVSP VVTAASVGQD QPPAVSVDVE SDQLSQPSHA NKTDAPAASS ERSPHETESR QVRSCTKVIM QGMVVGRAVD LTRLDGYDDL LHKLEEMFDI QGELSASLKK WKVIYMDDED DMMLVGDDPW HEFCIMVKKI YIYSYEEAKS LIPKAKLPVI GDTIKPNPDK LSPESDMPQS DSNNTAPVAA DKD // ID K3Z123_SETIT Unreviewed; 431 AA. AC K3Z123; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL30961.1, ECO:0000313|EnsemblPlants:Si020241m}; GN Name=LOC101763559 {ECO:0000313|EnsemblPlants:Si020241m}; GN ORFNames=SETIT_020241mg {ECO:0000313|EMBL:KQL30961.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si020241m}; RN [1] {ECO:0000313|EMBL:KQL30961.1, ECO:0000313|EnsemblPlants:Si020241m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si020241m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL30961.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si020241m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si020241m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL30961.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL30961.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003528; KQL30961.1; -; Genomic_DNA. DR RefSeq; XP_004953463.1; XM_004953406.3. DR EnsemblPlants; Si020241m; Si020241m; Si020241m.g. DR GeneID; 101763559; -. DR Gramene; Si020241m; Si020241m; Si020241m.g. DR KEGG; sita:101763559; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; K3Z123; -. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000004995; Chromosome I. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 105 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 431 AA; 45441 MW; 84E4F0BDD71804B6 CRC64; MDQFAGASGR FSREEEADEE QEDASNSPRR EISFMPAAAA ATASLSSAAA SASASTSASA SASGTSSAAP FRSASGDGAG ASGSGGGGGG GGAVDVEAVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY FPLDAAGSEK GLLLSFEDTA GKHWRFRYSY WNSSQSYVMT KGWSRFVKEK RLVAGDTVSF SRAAADDAGH RLFIDWKRRV DTRGPLRFSG LALPMPLASH HFGGPHHYSP WGFGVGGGGG GGGFFMPPSP PATLYEHHRL RQSLDFRGMT YPAPAVGRQL LFFGSARSTM PPHAPLHPPR APPMPLHYTL QPSSAGVAAA ASRPVVLDSV PVIESPTTAA KRVRLFGVNL DNNNNSQSDG GEASHQGNVL SLQMPGWQQR STPTLRLLEL PRHGAESSAA SSPSSSSSSK REARSALDLD L // ID K3Z3K3_SETIT Unreviewed; 937 AA. AC K3Z3K3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101781038 {ECO:0000313|EnsemblPlants:Si021121m}; GN ORFNames=SETIT_021121mg {ECO:0000313|EMBL:KQL12936.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021121m}; RN [1] {ECO:0000313|EMBL:KQL12936.1, ECO:0000313|EnsemblPlants:Si021121m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021121m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL12936.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021121m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021121m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL12936.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL12936.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL12936.1; -; Genomic_DNA. DR RefSeq; XP_012699862.1; XM_012844408.1. DR STRING; 4555.Si021121m; -. DR EnsemblPlants; Si021121m; Si021121m; Si021121m.g. DR GeneID; 101781038; -. DR Gramene; Si021121m; Si021121m; Si021121m.g. DR KEGG; sita:101781038; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; K3Z3K3; -. DR KO; K14486; -. DR OMA; DYDPMRW; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 833 917 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 937 AA; 103131 MW; 1BA74C3998E76AD3 CRC64; MASSQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTKKVPNSR IPNYPSLPSQ LLCQVHNITL HADKETDEIY AQMTLQPVHS ETEVFPIPSL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NLWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLVG VRRATRQQPA LSSSVLSTDS MHIGVLAAAA HAASSGGSFT IYYNPRTSPS PFVIPLARYN KATYMQPSVG MRFATMFETE ESSKRRCTGT VVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSLWD IETPENSLVF SSPLNSKRQC LPSYGVPGLQ IGSVNMSSIP RAQGNPFGNL QHMPGIGSEL ALMLLNQSGQ NLGSPLACQQ SSFSSIIQNV NHGYIPPSTF GASTGSIKQE SMLSNEAQQQ LSAPNIQKDD QQGIDSTSAQ ELDVRARGPR NTDSYSSQSI SDQNSKGEHR TKTRRSKKGL SHKSISDKSE LSSVPSQICD DQRHGSEPKL VDCETEQVNC GNNEDSSGAL TRGGFAGEPQ VQQVEQHELL APPKFEPSKS PDGGKSVSSF PNQGCSPQFF EGLDWVIQPS YYQDSNGIHS VSASENIFNQ SADITSTINA DTMEAFQNSC LSECFPNSVQ EFISSPDLNS LTFMSPDMQH LDGQHDVNNL PSTSNSYVQM SYSEESGNQS ASLSGLHMEA IHINSSCSEP MTTGSFDAGM FSKLPNLRDS QVLPLQEIHN SSMGTPSCSM DAASVKPIKP PVRTYTKVQK LGSVGRSIDV TRFRDYHELR SAIACMFGLQ GKLEHPGSSD WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGVHVLN DCIQIAQ // ID K3Z3N9_SETIT Unreviewed; 897 AA. AC K3Z3N9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101780785 {ECO:0000313|EnsemblPlants:Si021157m}; GN ORFNames=SETIT_021157mg {ECO:0000313|EMBL:KQL17289.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021157m}; RN [1] {ECO:0000313|EMBL:KQL17289.1, ECO:0000313|EnsemblPlants:Si021157m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021157m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL17289.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021157m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021157m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL17289.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL17289.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL17289.1; -; Genomic_DNA. DR RefSeq; XP_004963222.1; XM_004963165.2. DR STRING; 4555.Si021157m; -. DR EnsemblPlants; Si021157m; Si021157m; Si021157m.g. DR GeneID; 101780785; -. DR Gramene; Si021157m; Si021157m; Si021157m.g. DR KEGG; sita:101780785; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; K3Z3N9; -. DR OMA; GSKQPTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 763 847 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 897 AA; 98858 MW; 117F22BFAD052768 CRC64; MNLSPSKMPE PSPESDGEQR CLNSELWHAC AGPLVSLPMV GSRVVYFPQG HSEQVAASTN KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT LQPLSPEEQK EPFLPIELGA GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGFGV SPWLQPRIDY PLLGLKPDTY QQMAAAALEE IRGGDHLKQT SSLLPVQQAQ NLNGGLDPLY GNPVLQQMQF QSQQPPLQAV QQGYGQNTGN SGFLQSQLQQ LQLQKQQESA PQQQQQTQQV LQQQSHQDMQ QHLSSNCHDI TNVASSMSEA GSASQSQSSL LPVSSFYQQN MFEGNSSPGL HLQNSFQNFS SQEASNLLNL PRSGQLMASE GWPSKRLAVE PLANLEAQSV QHKLEKVSHQ SNVSHISGTL APLSARDGSS AQALGTNVQS HLLSSSFAIH DGMTTVRSGG VGSGTDAITI ASLRYSDVNL LPENSLATSS CLGESGTFNS LDDVCGVNPS QGGTFVKVYK SGSLGRSLDI TRFSSYYELR SELERLFGLE GQLEDPVRSG WQLVFVDREN DILLVGDDPW QEFVNSVWCI KILSPQDVQQ MVRGGDDLLS TPGATMLQSS VACDDYSAGH SMQNLTGSIA PVVPLDY // ID K3Z3U8_SETIT Unreviewed; 841 AA. AC K3Z3U8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101758484 {ECO:0000313|EnsemblPlants:Si021216m}; GN ORFNames=SETIT_021216mg {ECO:0000313|EMBL:KQL16446.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021216m}; RN [1] {ECO:0000313|EMBL:KQL16446.1, ECO:0000313|EnsemblPlants:Si021216m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021216m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL16446.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021216m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021216m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL16446.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL16446.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL16446.1; -; Genomic_DNA. DR RefSeq; XP_004962662.1; XM_004962605.3. DR STRING; 4555.Si021216m; -. DR EnsemblPlants; Si021216m; Si021216m; Si021216m.g. DR GeneID; 101758484; -. DR Gramene; Si021216m; Si021216m; Si021216m.g. DR KEGG; sita:101758484; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; K3Z3U8; -. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 795 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 841 AA; 92738 MW; 77D5D7E15207EDCF CRC64; MAAAAGGGGG GWGGPEAGGG GGGEKDALFV ELWKACAGPV SSIPPLGEKV YYFPQGHIEQ VEASTNQLAE QQGTPLYNLP WKIPCKLMNI ELKAEPDTDE VYAQLTLLPD KKRDENTTTT VESDAAEDEV VPVAPPATNE QLLIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTIYYKPR TSPAEFVVSR DRYYESLKQN YTIGMRFKMR FEGEEAAEQK FTGTIVGIGA SDPSGWADSK WRSLKVRWDE ASAVLRPERV SPWQIEPAAV SPSPVNPLPL RFKRSRSNVN ASPSDMPTVT REVASKVMAD SQQNSLPRAL HSQGRAQLTS RFRDSSDLKS AQDLTMWSSG IEQERNNIAA QTKLSLEGWT QTRRPEGYNQ LSSAFQPLKD AQNPLCSFPS QISGNHSNTW DTVDAHYPTQ QANHNMLPGT WSLMPHNSGF MMNQQNYLSM PEAALPQRAE IAKFSGKSAF TSLQGHGIDR CCSGWIGHNR ASSSLINPRP LVIETDVQKT KGTSFKLFGF PLGSPEKSEP LVSPPSVAYD GKLQTSPSQR NQLDIIEVDD YSDPSKTVKP LDGPQTDSVR ENNHPCPEAT QNVQNKVQSS STRSCKKVHK QGSALGRSID LTKFTCYSEL IAELDQMFDF GGELSSPHKN WMVVFTDNEG DMMLVGDDPW NEFCSMVHKM FIYTREEVER MNPGALSSRS EETLSDSLVR GSGSKEPRGG PSALSLNSEN C // ID K3Z3V5_SETIT Unreviewed; 835 AA. AC K3Z3V5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=SETIT_021223mg {ECO:0000313|EMBL:KQL12842.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021223m}; RN [1] {ECO:0000313|EMBL:KQL12842.1, ECO:0000313|EnsemblPlants:Si021223m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021223m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL12842.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021223m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021223m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL12842.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL12842.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL12842.1; -; Genomic_DNA. DR STRING; 4555.Si021223m; -. DR EnsemblPlants; Si021223m; Si021223m; Si021223m.g. DR Gramene; Si021223m; Si021223m; Si021223m.g. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; K3Z3V5; -. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 208 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 736 820 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 208 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 835 AA; 92757 MW; 21444BC2E3C2CE66 CRC64; MSSSSAASIG QPPPPAAPPE EEKKCLNSEL WHACAGPLVC LPTVGTRVIY FPQGHSEQVA ASTNKEVDGH IPNYPNLPPQ LICQLHDVTM HADVETDEVY AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLVISHSSLQ HRSLSHGIFM IKTSLSVYAI VSYNQGPLQA TKMKTLIWSV RQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASQPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM YPSLFPLRVK HPWYSGVAAL HDDSNALMWL RGVAGEGGFQ SFNFQSPGIG SWGQQRLHPS LLSNDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EQCNLNPLLQ QQIMQQASQQ QLVSPDSQNI QSVLSPSAIQ QQLHQLQQMQ HAHNDQKQKI QPDQPYQVPT SAVLPSPTSL PSHLREKFGF SDPNVNSSSF ISSSSNENML ESNFLQGSSK CVDLSRFNQP TVSEQQQQQQ AWKQKFMGSQ SMSFGGSVSL NSPTSKDGSV DNKVGRDVQN QSLFSPQVDN SSLLYNMVPN LTSNVVDNNI STIPSGSTYL QNPMYGCLDD SSGLLQNTGE NDPTTRTFVK VYKSGSVGRS LDITRFSNYA ELREELGQMF GIKGQLDDPD RSGWQLVFVD RENDVLLLGD DPWESFVNSV WYIKILSPED VHKMGKQGND PRYLS // ID K3Z465_SETIT Unreviewed; 727 AA. AC K3Z465; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101758484 {ECO:0000313|EnsemblPlants:Si021333m}; GN ORFNames=SETIT_021216mg {ECO:0000313|EMBL:KQL16445.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021333m}; RN [1] {ECO:0000313|EMBL:KQL16445.1, ECO:0000313|EnsemblPlants:Si021333m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021333m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL16445.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021333m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021333m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL16445.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL16445.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL16445.1; -; Genomic_DNA. DR EnsemblPlants; Si021333m; Si021333m; Si021216m.g. DR Gramene; Si021333m; Si021333m; Si021216m.g. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 727 AA; 80192 MW; 15B6C87FDF6316EB CRC64; MAAAAGGGGG GWGGPEAGGG GGGEKDALFV ELWKACAGPV SSIPPLGEKV YYFPQGHIEQ VEASTNQLAE QQGTPLYNLP WKIPCKLMNI ELKAEPDTDE VYAQLTLLPD KKRDENTTTT VESDAAEDEV VPVAPPATNE QLLIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTIYYKPR TSPAEFVVSR DRYYESLKQN YTIGMRFKMR FEGEEAAEQK FTGTIVGIGA SDPSGWADSK WRSLKVRWDE ASAVLRPERV SPWQIEPAAV SPSPVNPLPL RFKRSRSNVN ASPSDMPTVT REVASKVMAD SQQNSLPRAL HSQGRAQLTS RFRDSSDLKS AQDLTMWSSG IEQERNNIAA QTKLSLEGWT QTRRPEGYNQ LSSAFQPLKD AQNPLCSFPS QISGNHSNTW DTVDAHYPTQ QANHNMLPGT WSLMPHNSGF MMNQQNYLSM PEAALPQRAE IAKFSGKSAF TSLQGHGIDR CCSGWIGHNR ASSSLINPRP LVIETDVQKT KGTSFKLFGF PLGSPEKSEP LVSPPSVAYD GKLQTSPSQR NQLDIIEVDD YSDPSKTVKP LDGPQTDSVR ENNHPCPEAT QNVQNKVQSS STRSCKKVHH TLHLFPR // ID K3Z4X1_SETIT Unreviewed; 579 AA. AC K3Z4X1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101786550 {ECO:0000313|EnsemblPlants:Si021589m}; GN ORFNames=SETIT_021589mg {ECO:0000313|EMBL:KQL14740.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021589m}; RN [1] {ECO:0000313|EMBL:KQL14740.1, ECO:0000313|EnsemblPlants:Si021589m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021589m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL14740.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021589m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021589m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL14740.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL14740.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL14740.1; -; Genomic_DNA. DR STRING; 4555.Si021589m; -. DR EnsemblPlants; Si021589m; Si021589m; Si021589m.g. DR Gramene; Si021589m; Si021589m; Si021589m.g. DR eggNOG; ENOG410JSIU; Eukaryota. DR eggNOG; ENOG41108RS; LUCA. DR InParanoid; K3Z4X1; -. DR OMA; HICFNPR; -. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 579 AA; 64254 MW; C4D7C1B453AC229D CRC64; MFGRNNHDRE TEVNCEMEDG DGGKKLRTSH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYEQLRPSQ ELIAKDLHGM KWRFRHIYRG QPRRHLLTTG WSSFINKKKL VSGDAVLFLR GNDGELRLGV RRAVPLKNEL LLEAVNSTDS KLRTLSAVAS SLENRSIFHI CFNPRTGASE FIVSYGKFLK GLNYPFSTGM RFKVGFENED ANQRSHGLIS GISEVDPIRW PGSKWRCLLV KWDDDTKCNH RNRVSPWDIE GISSSISMTN CLSSVSKRTK LCFPQGDLDA PILDGNGRPD SMETECFHRV LQGQELVRTR THGVAWSHSS DTPKCQGSCE RRFSADVWNC KMNDAMSGFR HRNANGFAYQ PLGFSESVRF SEVLQGQEMS QAVPSFLGAA LDARVQNGRI GSFDYVHRST VSQGYPLQQF NLPATEVHSP SSVLMVNQTT ALQPELEGMT NREEANGSRY APIAVRREAE RWPSTQQPRA SGNGSEVFNT TEASAPATAA KPVDRGVGRS SCRLFGFSLT DKILGAEEDG VKEGNYEADH QTPRALDLFG HSQSAPSALH ALCAAPLGI // ID K3Z4X7_SETIT Unreviewed; 577 AA. AC K3Z4X7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101776042 {ECO:0000313|EnsemblPlants:Si021595m}; GN ORFNames=SETIT_021595mg {ECO:0000313|EMBL:KQL14326.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021595m}; RN [1] {ECO:0000313|EMBL:KQL14326.1, ECO:0000313|EnsemblPlants:Si021595m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021595m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL14326.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021595m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021595m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL14326.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL14326.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL14326.1; -; Genomic_DNA. DR RefSeq; XP_004961223.1; XM_004961166.2. DR STRING; 4555.Si021595m; -. DR EnsemblPlants; Si021595m; Si021595m; Si021595m.g. DR GeneID; 101776042; -. DR Gramene; Si021595m; Si021595m; Si021595m.g. DR KEGG; sita:101776042; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; K3Z4X7; -. DR KO; K14486; -. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 577 AA; 64263 MW; C09C722C03D63CD5 CRC64; MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELVAKDL HGTEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK NGSAFPALYN QCSNLGSLAN VAHAVATKSV FHIYYNPRLS QSEFIIPYSK FMKSFSQPFS AGLRFKMRYE SDDATERRYT GIIAGISEAD PMWRGSKWKC LMVRWDDDVD FRRPNRISPW EIELTSSVSG SHLSAPNAKR LKPCLPHVNP DYLVPNGSGR PDFAESAQFH KVLQGQELLG YRTHDNAAVA TSQPCEARNM QYIDERSCSN DASNSIPGVP RLGVRTPLGS PGFSYHCSGF GESQRFQKVL QGQEVFRPYR GSLVDACLRN NAFHPQDGSH APSAVNKWHT QLHGCAFRGP QAPMLPSQSS SPPSVLMFQR GNSKISRFEF GHGSLDKNED DRPAMFGHDG GIGGTEQSLM LQPHHDSGEV RNRHVTVEKF HSTVAARKDG PDNREVNTNS CKIFGISLTE KVPANKEKDS GDVNYPSPFL SLKQQVPKSL GNSCATVHEQ RPVVGRVIDV STMDMMI // ID K3Z4Z5_SETIT Unreviewed; 569 AA. AC K3Z4Z5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101776042 {ECO:0000313|EnsemblPlants:Si021613m}; GN ORFNames=SETIT_021595mg {ECO:0000313|EMBL:KQL14325.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021613m}; RN [1] {ECO:0000313|EMBL:KQL14325.1, ECO:0000313|EnsemblPlants:Si021613m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021613m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL14325.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021613m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021613m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL14325.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL14325.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL14325.1; -; Genomic_DNA. DR EnsemblPlants; Si021613m; Si021613m; Si021595m.g. DR Gramene; Si021613m; Si021613m; Si021595m.g. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 569 AA; 63297 MW; A115D45E7769B387 CRC64; MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELVAKDL HGTEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK NGSAFPALYN QCSNLGSLAN VAHAVATKSV FHIYYNPRLS QSEFIIPYSK FMKSFSQPFS AGLRFKMRYE SDDATERRYT GIIAGISEAD PMWRGSKWKC LMVRWDDDVD FRRPNRISPW EIELTSSVSG SHLSAPNAKR LKPCLPHVNP DYLVPNGSGR PDFAESAQFH KVLQGQELLG YRTHDNAAVA TSQPCEARNM QYIDERSCSN DASNSIPGVP RLGVRTPLGS PGFSYHCSGF GESQRFQKVL QGQEVFRPYR GSLVDACLRN NAFHPQDGSH APSAVNKWHT QLHGCAFRGP QAPMLPSQSS SPPSVLMFQR GNSKISRFEF GHGSLDKNED DRPAMFGHDG GIGGTEQSLM LQPHHDSGEV RNRHVTVEKF HSTVAARKDG PDNREVNTNS CKIFGISLTE KVPANKEKDS GDVNYPSPFL SLKQQVPKSL GNSCATVSAP WSNFVVVLE // ID K3Z5L5_SETIT Unreviewed; 502 AA. AC K3Z5L5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101757257 {ECO:0000313|EnsemblPlants:Si021833m}; GN ORFNames=SETIT_021833mg {ECO:0000313|EMBL:KQL12642.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si021833m}; RN [1] {ECO:0000313|EMBL:KQL12642.1, ECO:0000313|EnsemblPlants:Si021833m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si021833m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL12642.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si021833m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si021833m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL12642.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL12642.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL12642.1; -; Genomic_DNA. DR RefSeq; XP_004959954.1; XM_004959897.2. DR EnsemblPlants; Si021833m; Si021833m; Si021833m.g. DR GeneID; 101757257; -. DR Gramene; Si021833m; Si021833m; Si021833m.g. DR KEGG; sita:101757257; -. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR InParanoid; K3Z5L5; -. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 502 AA; 54437 MW; 341969280477F4F7 CRC64; MAHHQPPPAA ADDPIVDRDV WLACAIPLSR LPVVGAQVYY FPHGHAEQCP DHLPAPLPTP HLFPCTVTAV GLGADDKTNE VFAQISLQPG PHRGPPPPAP DAADLNLSFF AKQLTQSDAN NGGGFSVPRH CADHIFPKLR FEDDPPVQNL VMRDPVGDHW QFRHIYRGTP RRHLLTTGWS KFVNAKLLVA GDTVVFMRRP DGELLIGLRR APRYPVVARA ADQPPPCNAR ARVPPGDVME AARLAAEGSP FTVNYFPRQG AAEFVVPRKE VEDALASRWE PGTQVRMQVM EAEDARRTEW ANGTLNKLHP NIWRALEIDW DDSSPFSLTR SRYVNAWQVQ FVSFPPLLKR LRISDTMAPL CSGDVSSLAA PLIGPESQAM AILLGSPIPA GMQGARHDVP PSSSTLGMLT TQLLFPQLSS DLQMPPSVNS GGSSEILDPE TGSPPNNSVN MPPAELPVEA KGIQLFGATI NPHVVQRATN GASEEVNGAI NGVVDENVGK DL // ID K3Z7I5_SETIT Unreviewed; 352 AA. AC K3Z7I5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL17016.1, ECO:0000313|EnsemblPlants:Si022505m}; GN Name=LOC101777824 {ECO:0000313|EnsemblPlants:Si022505m}; GN ORFNames=SETIT_022505mg {ECO:0000313|EMBL:KQL17016.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si022505m}; RN [1] {ECO:0000313|EMBL:KQL17016.1, ECO:0000313|EnsemblPlants:Si022505m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si022505m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL17016.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si022505m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si022505m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL17016.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL17016.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL17016.1; -; Genomic_DNA. DR EnsemblPlants; Si022505m; Si022505m; Si022505m.g. DR Gramene; Si022505m; Si022505m; Si022505m.g. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; K3Z7I5; -. DR OMA; HHSEMRC; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 40741 MW; 00260A663566AC8D CRC64; MVDKRCESCR KWQEHYYWEH MDVTKIRFFK LMTGDFAKGI SIPDKFAKNL NGIGCIDLKA PSGETWNIGL EKHADELFLM SRWEDFVKTH VLKENDLLIF TYSGNSSFDV LIFEASGCEK VSSLFGNRTA PDLHKHFDDM ADRGKQAEHY ALTDSKETTA PSQLAGFPHH ASTSKKSGGR NPRKLPESPN SSNNHVKCDD IREEDSDEEY AKSKYCYTRI AERLSDEEKE EIISLASIRS DNPAFVTVLQ MSHVRRKNNF LIFPNRFVAD HFDCRLHEIT LVRPNRKDKW CVKYYYARSA QGVRNYTFSK FVQENRLREG DICAFELMKG SRRVTMTVHA IRKVHGRFVL VG // ID K3Z8D2_SETIT Unreviewed; 298 AA. AC K3Z8D2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL17015.1, ECO:0000313|EnsemblPlants:Si022802m}; GN Name=LOC101777418 {ECO:0000313|EnsemblPlants:Si022802m}; GN ORFNames=SETIT_022802mg {ECO:0000313|EMBL:KQL17015.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si022802m}; RN [1] {ECO:0000313|EMBL:KQL17015.1, ECO:0000313|EnsemblPlants:Si022802m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si022802m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL17015.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si022802m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si022802m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL17015.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL17015.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL17015.1; -; Genomic_DNA. DR EnsemblPlants; Si022802m; Si022802m; Si022802m.g. DR Gramene; Si022802m; Si022802m; Si022802m.g. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR InParanoid; K3Z8D2; -. DR OMA; HGVAKPP; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 296 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 296 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 34201 MW; 8956334681DDBEC4 CRC64; MQTIPRKFVV NIREHLSEEL KLEAPDGKTY AVQVATEQNE LVLRTGWPDF ATAYELKFGD LLVFRNCKNS HFKVRLFDPS GCEKELSCVL MDGAPCVQER KVSHGDHTQS PTGKRMEIGS PSGSRKTSKM NPIDSPSQRR EIHHLQPPGH VPSARTKSPR HGVAKPPYIL PRYTTLNDQQ KNEVDKKVGA IESKIPIYVA TMRNSNTARA FLEFAIDYAT KYLPRENQTM RLRRPGPSKD DTWEALFRVK NRRYTLGRGW RHFVDDNKLK PGDICLFSLM KNTKNLTMDV HIIRKRSM // ID K3Z8P6_SETIT Unreviewed; 278 AA. AC K3Z8P6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL14997.1, ECO:0000313|EnsemblPlants:Si022916m}; GN Name=LOC101767421 {ECO:0000313|EnsemblPlants:Si022916m}; GN ORFNames=SETIT_022916mg {ECO:0000313|EMBL:KQL14997.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si022916m}; RN [1] {ECO:0000313|EMBL:KQL14997.1, ECO:0000313|EnsemblPlants:Si022916m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si022916m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL14997.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si022916m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si022916m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL14997.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL14997.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL14997.1; -; Genomic_DNA. DR RefSeq; XP_012700381.1; XM_012844927.1. DR EnsemblPlants; Si022916m; Si022916m; Si022916m.g. DR GeneID; 101767421; -. DR Gramene; Si022916m; Si022916m; Si022916m.g. DR KEGG; sita:101767421; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR InParanoid; K3Z8P6; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31382 MW; C9C36990C04000FD CRC64; MATKASSAAS GAAYEEQRRK RVLENLKHLE DLGISEMSKS LLQAARLQKQ SKGGVRVSPK ARKKFDATEV RRSSRAKATV SYKDDYGELD TFLRRKRRSG GKNSEQGREY TGRVSSYEQQ QRAFRRAEKL QDGLDPNNPS FVKTMVRSHV SSCFWLGLPT SFCKQNLPPT EFRMVLEDED GVEFDAVYIG KRTGLSGGWR GFAMHHNLED GDSLVFELAE HDRFKIYIIK AIDDDDVEED ESDDKNASGG TKEEPAEEDS PAAEPPKGAK RRKLRGRR // ID K3ZCG0_SETIT Unreviewed; 355 AA. AC K3ZCG0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL17020.1, ECO:0000313|EnsemblPlants:Si024235m}; GN ORFNames=SETIT_024235mg {ECO:0000313|EMBL:KQL17020.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si024235m}; RN [1] {ECO:0000313|EMBL:KQL17020.1, ECO:0000313|EnsemblPlants:Si024235m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si024235m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL17020.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si024235m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si024235m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL17020.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL17020.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL17020.1; -; Genomic_DNA. DR EnsemblPlants; Si024235m; Si024235m; Si024235m.g. DR Gramene; Si024235m; Si024235m; Si024235m.g. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; K3ZCG0; -. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 347 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 347 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 40833 MW; 0BCB8053A61851A1 CRC64; MVQQGCESCR KWQEHCYLEH MGTSKVRFFK LMTGDFAQGI SIPEKFVSNL NGQITKGLNL KAPSGETWLI EVAENGDELF FMSGWDDFAR AHELQENDLL IFTCSGNYSF DVQIFDASGC EKVPCFFTSK KGPCTHKHSD GIVDQQAEHC ILSDSDDLRM PMRLIGSPNK ASTSKKKSGK TRPRKEPEFP NSNYHIKQEL ISDEEQSDYR LVDSNYYYYY SRSASNLTGD ERDQIFSLAS IRPGNPAFVA VLQKTHIGHK NYLLIVHHGF AADHLEGRSH DILLLRPNRK KKWYVRYYHA SRARGFNCCR WIKFVGDNRL RKDHICIFEL MKGGRRTTMV VHVLRKVDGR FVLVA // ID K3ZCR5_SETIT Unreviewed; 234 AA. AC K3ZCR5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL17014.1, ECO:0000313|EnsemblPlants:Si024343m}; GN Name=LOC101786176 {ECO:0000313|EnsemblPlants:Si024343m}; GN ORFNames=SETIT_024343mg {ECO:0000313|EMBL:KQL17014.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si024343m}; RN [1] {ECO:0000313|EMBL:KQL17014.1, ECO:0000313|EnsemblPlants:Si024343m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si024343m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL17014.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si024343m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si024343m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL17014.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL17014.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL17014.1; -; Genomic_DNA. DR EnsemblPlants; Si024343m; Si024343m; Si024343m.g. DR Gramene; Si024343m; Si024343m; Si024343m.g. DR OrthoDB; \N; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 200 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 234 AA; 27273 MW; D93C8A8A1DB66CA5 CRC64; MRKYFTRCKE CIVHHYWKHM DDWGKSFLNV MIGDYVVRPV IDKDYAVKHL PHEDQTITLC HPSNIKKWHA SFKVNTDGTC ILSLGSSDFF RDNGLQEGDI SIFEVLKSQT RTTVAVHLPK RYRLPEGVTS SESSVYEDTK PQYAVSHKTR LDNQQKRKVV KKVKAIQSET PILVFVKGLS GDYKMLITFQ HFARGKMLGG RWNQFVKDNM LRQGDICLFE LLKEKWLTMH GRFS // ID K3ZCZ3_SETIT Unreviewed; 354 AA. AC K3ZCZ3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL17019.1, ECO:0000313|EnsemblPlants:Si024423m}; GN Name=LOC101779044 {ECO:0000313|EnsemblPlants:Si024423m}; GN ORFNames=SETIT_024423mg {ECO:0000313|EMBL:KQL17019.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si024423m}; RN [1] {ECO:0000313|EMBL:KQL17019.1, ECO:0000313|EnsemblPlants:Si024423m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si024423m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL17019.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si024423m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si024423m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL17019.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL17019.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL17019.1; -; Genomic_DNA. DR EnsemblPlants; Si024423m; Si024423m; Si024423m.g. DR Gramene; Si024423m; Si024423m; Si024423m.g. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; K3ZCZ3; -. DR OMA; NFKGQIT; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40806 MW; 7A700077E66B75AC CRC64; MVVEKGCESC RKWQEHYYWE HMDVTKIRFF KLMTGDFSKG ISIPDKFAKN FKGQITRGFE LKAPSGETWH MSVEKRGDEL FLMSGWEDFV KAHELQENDL LLFTCCGNSS FQVLVFEASG CEKASSLFGS RISPDMCKHV NDIAGQHGEQ HFSVSDSEDT TTPSQHIGSY QNASSSKKSC GKTKPSESEY PNTSNFVAKH PAIGEEDSDD EYAKSNCYYS MFANRLRDDI KEEIIGLASI RLNNPAFVTV LMKKHVQRRN NALIIPSRFA ADHLEERAHD IILRRPNRKE KWLVSYYYSH YMRSFRNLAF FKFVHDNKLR EGDICVFELM KGKRRVTMTI HVIRNANGRF ILVG // ID K3ZDE0_SETIT Unreviewed; 381 AA. AC K3ZDE0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL14478.1, ECO:0000313|EnsemblPlants:Si024576m}; GN Name=LOC101782792 {ECO:0000313|EnsemblPlants:Si024576m}; GN ORFNames=SETIT_024576mg {ECO:0000313|EMBL:KQL14478.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si024576m}; RN [1] {ECO:0000313|EMBL:KQL14478.1, ECO:0000313|EnsemblPlants:Si024576m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si024576m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL14478.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si024576m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si024576m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL14478.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL14478.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL14478.1; -; Genomic_DNA. DR RefSeq; XP_004961326.1; XM_004961269.1. DR STRING; 4555.Si024576m; -. DR EnsemblPlants; Si024576m; Si024576m; Si024576m.g. DR GeneID; 101782792; -. DR Gramene; Si024576m; Si024576m; Si024576m.g. DR KEGG; sita:101782792; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; K3ZDE0; -. DR KO; K09287; -. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 132 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 206 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 132 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 206 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 40420 MW; 802617E9284EED6A CRC64; MDSTSCLVDD SSSAASTGKK QAPASAPSSR PLQRVGSGAS AVMDAAEPGA EADSGGAARA GGGGGGAAVG GKLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGESE AARAYDVAAQ RFRGRDAVTN FRPLAESDPE AAAELRFLAS RSKAEVVDML RKHTYLEELA QNRRAFAAAS PSPPPKNNPS SPAAASSAAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPAAA AVTGECKGVL LNFEDAAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLH AGDAVGFYRS AGKQLFIDCK VRPKTTAATT PPPVKAVRLF GVDLLTAARP AAALPKQEEM VAVTNKRARD AIAASTPHMV FKKQCIDFAL T // ID K3ZEH1_SETIT Unreviewed; 351 AA. AC K3ZEH1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL17018.1, ECO:0000313|EnsemblPlants:Si024966m}; GN Name=LOC101778631 {ECO:0000313|EnsemblPlants:Si024966m}; GN ORFNames=SETIT_024966mg {ECO:0000313|EMBL:KQL17018.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si024966m}; RN [1] {ECO:0000313|EMBL:KQL17018.1, ECO:0000313|EnsemblPlants:Si024966m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si024966m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL17018.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si024966m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si024966m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL17018.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL17018.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL17018.1; -; Genomic_DNA. DR EnsemblPlants; Si024966m; Si024966m; Si024966m.g. DR Gramene; Si024966m; Si024966m; Si024966m.g. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; K3ZEH1; -. DR OMA; FWTHFQS; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 343 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 343 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 40859 MW; 9DC27497BB10ADCF CRC64; MVAEKRCERC RKWQEHYYRE HMDVTKIRFF KLMTGDFAKG VSIPVKFVRN FNGQITEVVE LKAASGETWH VGVDKIADEL LLTSGWEDFV KARELQENDV LLFTSSGNSS FDVLIFEASG CEKLSSLFDH KTGPYRMHKH LNDIAGRHAE QYITDSEDTV VPSQLVGSTH KASTAKKHNC KGKEPQSLNS SSFHVKHEAI EEEESNDSYA DSKLYYSRNA NQVTEEEKEK ILSLASIQPE NPAFVAVLRR NHRQRRNNFL TVPSRFAADH LHERPQEIIL CRPRRKDRWF VRYYYTSYIR GFQNLQFFKF VHDNKLREED TCVFELMKGA KRVTMTVHVI RKVGDRFDLV G // ID K3ZF38_SETIT Unreviewed; 432 AA. AC K3ZF38; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL12790.1, ECO:0000313|EnsemblPlants:Si025187m}; GN Name=LOC101778107 {ECO:0000313|EnsemblPlants:Si025187m}; GN ORFNames=SETIT_025187mg {ECO:0000313|EMBL:KQL12790.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si025187m}; RN [1] {ECO:0000313|EMBL:KQL12790.1, ECO:0000313|EnsemblPlants:Si025187m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si025187m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL12790.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si025187m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si025187m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL12790.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL12790.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003530; KQL12790.1; -; Genomic_DNA. DR RefSeq; XP_004963379.1; XM_004963322.1. DR EnsemblPlants; Si025187m; Si025187m; Si025187m.g. DR GeneID; 101778107; -. DR Gramene; Si025187m; Si025187m; Si025187m.g. DR KEGG; sita:101778107; -. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR InParanoid; K3ZF38; -. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000004995; Chromosome III. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 298 400 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 298 400 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 46977 MW; 2D8B898C3B3C21DE CRC64; MANAKGSSAG GTGGAGHGGD LGRAISHEQY QAFLASVHRA AAPGAANVHH HQYPAGLIQS PPMAMPAHHV PVPRPQIAVP PPQPFARPPE HSGQSQPPTG HYQDYSPYGN TASSQYTRGF ADWGTHNNAL MSLAHATTFG SGSNSIISNG IHQNFTSYNT HTWTATYMPR NPYNNAYGPA TMNMMLQTPS FHSNSHGKDS GAGFAASSFT VSPTVVPTSP FQLMSPKSPN YTSTQIFEET NNLEDTSTVF GSGDMESDNS EEPDPTPVAE IKDQNQGNGH IVNAMSKTVN CQDYRIILRK DLTNSDVGNI GRIVLPKKDA EPNLPILEDK DGLILEMDDF ELPAVWKFKY RYWPNNKSRM YILETTGEFV KRHGLQAKDI LVIYKNKKSG RYVARAVKAE DIQVPECECI KAGNLSEECG FAVSPSAKKV IM // ID K3ZHD6_SETIT Unreviewed; 811 AA. AC K3ZHD6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101781693 {ECO:0000313|EnsemblPlants:Si025988m}; GN ORFNames=SETIT_025988mg {ECO:0000313|EMBL:KQK94750.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si025988m}; RN [1] {ECO:0000313|EMBL:KQK94750.1, ECO:0000313|EnsemblPlants:Si025988m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si025988m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK94750.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si025988m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si025988m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK94750.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK94750.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003535; KQK94750.1; -; Genomic_DNA. DR RefSeq; XP_014661170.1; XM_014805684.1. DR STRING; 4555.Si025988m; -. DR EnsemblPlants; Si025988m; Si025988m; Si025988m.g. DR GeneID; 101781693; -. DR Gramene; Si025988m; Si025988m; Si025988m.g. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; K3ZHD6; -. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004995; Chromosome VIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 686 768 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 90033 MW; 1C0A48EF1EAD49D3 CRC64; MYTELWNLCA GPLVTVPSVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM NVELKAEPDT DEVYAQLTLL PESKQPDENG SSEQEMPAAP SAAPARPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGA EWRFRHIFRG QPRRHLLQSG WSVFVSAKRL VAGDAFIFLR GVNGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPAE FVVPCDRYME SLKRNYPIGM RFKMRFEGEE APEQRFTGTI VGNVDPDQAG WPESKWRYLK VRWDEASSIP RPERVSPWQI EPAVSPPPIN PLPVHRPKRP RSNAVASLPD SSAPTKEAAP KVTVEAQQNA LQRVLQTQDN ATPKSAFGDK SELDAAQQSV LRPSGFDREK STIGTQRKLG SDSWMQMSRP ESYNEMLSGL SGYQQPKDLQ NQQGFCSLPD QIAAGRPNFW HTVNAHYQDQ QGNHNMFGSW SMMPSSTGFG LNRQNYPMIQ EVGAMPQSSA NTKFGNGVYT PLPGRGIDQY SAGWFGHMVP GSRMDDAQPR VIKPQPLVLA HGDAQKMKGN SCKLFGIHLD SPAKSEPLKS PPSVANDGMP QTPAAAEWRR VDTTEVEKSS DPPKTPKQLD APQADPVPCP QSSRSTQCKS QGGSTRSCKK VHKQGIALGR SVDLTKFKGY TELVSELDEM FDFNGELKGS NKEWMVVYTD NEGDMMLVGD DPWDEFCNMV HKIFIYTTEE VQRMNPGTLN SGSEDSPANS MERGSAVRET LPASSLNSGN C // ID K3ZHD7_SETIT Unreviewed; 810 AA. AC K3ZHD7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101781693 {ECO:0000313|EnsemblPlants:Si025989m}; GN ORFNames=SETIT_025988mg {ECO:0000313|EMBL:KQK94748.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si025989m}; RN [1] {ECO:0000313|EMBL:KQK94748.1, ECO:0000313|EnsemblPlants:Si025989m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si025989m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK94748.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si025989m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si025989m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK94748.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK94748.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003535; KQK94748.1; -; Genomic_DNA. DR EMBL; CM003535; KQK94749.1; -; Genomic_DNA. DR RefSeq; XP_004979364.1; XM_004979307.3. DR EnsemblPlants; Si025989m; Si025989m; Si025988m.g. DR EnsemblPlants; Si025990m; Si025990m; Si025988m.g. DR GeneID; 101781693; -. DR Gramene; Si025989m; Si025989m; Si025988m.g. DR Gramene; Si025990m; Si025990m; Si025988m.g. DR KEGG; sita:101781693; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000004995; Chromosome VIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 685 767 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 810 AA; 89905 MW; BBCFEBD3B8A08A1B CRC64; MYTELWNLCA GPLVTVPSVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM NVELKAEPDT DEVYAQLTLL PESKPDENGS SEQEMPAAPS AAPARPRVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPTQE LVAKDLHGAE WRFRHIFRGQ PRRHLLQSGW SVFVSAKRLV AGDAFIFLRG VNGELRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA VNTGTMFTVY YKPRTSPAEF VVPCDRYMES LKRNYPIGMR FKMRFEGEEA PEQRFTGTIV GNVDPDQAGW PESKWRYLKV RWDEASSIPR PERVSPWQIE PAVSPPPINP LPVHRPKRPR SNAVASLPDS SAPTKEAAPK VTVEAQQNAL QRVLQTQDNA TPKSAFGDKS ELDAAQQSVL RPSGFDREKS TIGTQRKLGS DSWMQMSRPE SYNEMLSGLS GYQQPKDLQN QQGFCSLPDQ IAAGRPNFWH TVNAHYQDQQ GNHNMFGSWS MMPSSTGFGL NRQNYPMIQE VGAMPQSSAN TKFGNGVYTP LPGRGIDQYS AGWFGHMVPG SRMDDAQPRV IKPQPLVLAH GDAQKMKGNS CKLFGIHLDS PAKSEPLKSP PSVANDGMPQ TPAAAEWRRV DTTEVEKSSD PPKTPKQLDA PQADPVPCPQ SSRSTQCKSQ GGSTRSCKKV HKQGIALGRS VDLTKFKGYT ELVSELDEMF DFNGELKGSN KEWMVVYTDN EGDMMLVGDD PWDEFCNMVH KIFIYTTEEV QRMNPGTLNS GSEDSPANSM ERGSAVRETL PASSLNSGNC // ID K3ZLC3_SETIT Unreviewed; 355 AA. AC K3ZLC3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK93960.1, ECO:0000313|EnsemblPlants:Si027380m}; GN Name=LOC101779025 {ECO:0000313|EnsemblPlants:Si027380m}; GN ORFNames=SETIT_027380mg {ECO:0000313|EMBL:KQK93960.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si027380m}; RN [1] {ECO:0000313|EMBL:KQK93960.1, ECO:0000313|EnsemblPlants:Si027380m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si027380m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK93960.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si027380m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si027380m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK93960.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK93960.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003535; KQK93960.1; -; Genomic_DNA. DR STRING; 4555.Si027380m; -. DR EnsemblPlants; Si027380m; Si027380m; Si027380m.g. DR Gramene; Si027380m; Si027380m; Si027380m.g. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; K3ZLC3; -. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000004995; Chromosome VIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK93960.1}. SQ SEQUENCE 355 AA; 39984 MW; 5FDEDBFD8C1B357D CRC64; KIPTAFHQHL KEQPTGLVSL KGPSGNTWQA VLTSDSEGLF FEQGWKEFVT DHSVKQGHFL VFTYDGLSRF SVTVFGSFGV VDPPSLVAKR TNNVVIKIED DEEEVHVDMD AGGTSETSIL PPEEGNGITG KRTREVNDIV ADGNASKRHS SVPKQAEKKS PEAIVRTSKD ASTIVNTEKD TPFSILNEST AFNKTHVRDK NMPKLGKFIV RRARQPVVIS QRRPVTEEEK GLALRRAKEF KSKNPFAVQT MMESYVYVGF FMNITCEFVR ESLPRISKKM TLWDPLGKPW QVNYVYYSDR SVASFSGGWG KFALGNNLEK FDVCVFELFK EDNIKVHIYR VVPEITPLLR ASSRD // ID K3ZM19_SETIT Unreviewed; 275 AA. AC K3ZM19; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK93626.1, ECO:0000313|EnsemblPlants:Si027632m}; GN ORFNames=SETIT_027632mg {ECO:0000313|EMBL:KQK93626.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si027632m}; RN [1] {ECO:0000313|EMBL:KQK93626.1, ECO:0000313|EnsemblPlants:Si027632m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si027632m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK93626.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si027632m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si027632m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK93626.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK93626.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003535; KQK93626.1; -; Genomic_DNA. DR EnsemblPlants; Si027632m; Si027632m; Si027632m.g. DR Gramene; Si027632m; Si027632m; Si027632m.g. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; K3ZM19; -. DR OMA; QHAGESQ; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000004995; Chromosome VIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 275 AA; 31321 MW; 096BBFDC07A8DDFD CRC64; MNHLSQEHPQ AWPWGMAMYT NLHYHHYYEK EHLFEKPLTP SDVGKLNRLV IPKQHAERYF PLSGDSGEKG LILSFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKQ LDAGDIVHFE RMRGFGMGDR LFICYRRRGE SATAAPAPPP AVRVAAPTQS AGGEQQPWSP MCYSTSGSYP TSPANSHAYR CSVDHDPSNM QHAGESQWDR DNRSCSAASA PSRRLRLFGV NLDCGPGPEP EPETPTTMYS YMHQSPYAPD NWSALQNHQN KTHHI // ID K3ZQE9_SETIT Unreviewed; 965 AA. AC K3ZQE9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL26249.1, ECO:0000313|EnsemblPlants:Si028829m}; GN Name=LOC101754811 {ECO:0000313|EnsemblPlants:Si028829m}; GN ORFNames=SETIT_028829mg {ECO:0000313|EMBL:KQL26249.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si028829m}; RN [1] {ECO:0000313|EMBL:KQL26249.1, ECO:0000313|EnsemblPlants:Si028829m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si028829m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL26249.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si028829m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si028829m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL26249.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL26249.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003529; KQL26249.1; -; Genomic_DNA. DR STRING; 4555.Si028829m; -. DR EnsemblPlants; Si028829m; Si028829m; Si028829m.g. DR Gramene; Si028829m; Si028829m; Si028829m.g. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K3ZQE9; -. DR OMA; PAGMNQI; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000004995; Chromosome II. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 462 563 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 717 767 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 462 563 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 965 AA; 105516 MW; 07FAB5C37E59F4CC CRC64; MSAPAPQQAP PAQPPPPPPP PAAPAGVTAT PISVQPPPIQ PKPPPPPQQQ PQPAGPVSGP PTPTPAQLLN LGPQPPLYRG PICWNSYCKD PDPNSFGRRG WKVRSGPPFS IYADLCGRCY SQFEQGIYCE TFHSDEGGWR NCESCGRRVH CGCIVSIHKY QLRDAGGVDC AKCARNTRTA MAPPSPVWAS PMHNSQNVAD RKDIPVKSWR PPAGQISSQW RQTNLWSVSS IQSDLQQRLA FEFDRPSGSE KLLPGRTFIH AQERKFDDMH DRPTTPAGMN HIIRERDANG HGQPTNMDPA YPYNLYHRDG PHPNNLHDPS HHGGENDSLS SRKVALPDAS TGVDGFKHDS HHPSILKDDP PSLSVGLASN FASQNGPKDH IRIAPAQQQA QMASSSLQKQ FYSHPVTGYS EFQAQLRNGR PRMDAKARSQ LLPRYWPRIT DQELQHLSNE YPTSNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQAEGLPLK VQDASGKEWI FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRID PEGKLIMGFR KATNMSSEQE QTTKPANGAP ATSEANGKVS APDSSPNAAI SRQNKVNTET KSSSPVEQAA TSKIDKDVSA PKEGPGTASS SPGPVKRKAT NLTPKNKRLR MENEESMELK ITWEEAQELL RPPPKAPSIV IVDGHEFEEY EEPPILGRKT YFATDQSGSN HQWAQCENCS KWRKLPADAL MPSKWTCNDN KWDSERSSCE AAQEISMEEL AELIPIKSGP GGAKKPKSKI EGEAIDASDG LDTLANLAIL GEGEALPSQP TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCMTVR RRFRTLMLRR EKRATTDSPR RKETGQSSQT VTQAGSGLQA TSANATNSSK KAVGNADGPE DMAVDHKVTS SPVKNHIDLN SQPERDDEQS PKSGAAGALS RDNPT // ID K3ZQF2_SETIT Unreviewed; 962 AA. AC K3ZQF2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL26250.1, ECO:0000313|EnsemblPlants:Si028832m}; GN Name=LOC101754811 {ECO:0000313|EnsemblPlants:Si028832m}; GN ORFNames=SETIT_028829mg {ECO:0000313|EMBL:KQL26250.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si028832m}; RN [1] {ECO:0000313|EMBL:KQL26250.1, ECO:0000313|EnsemblPlants:Si028832m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si028832m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL26250.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si028832m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si028832m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL26250.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL26250.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003529; KQL26250.1; -; Genomic_DNA. DR RefSeq; XP_012699489.1; XM_012844035.1. DR EnsemblPlants; Si028832m; Si028832m; Si028829m.g. DR GeneID; 101754811; -. DR Gramene; Si028832m; Si028832m; Si028829m.g. DR KEGG; sita:101754811; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR Proteomes; UP000004995; Chromosome II. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 459 560 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 714 764 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 459 560 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 962 AA; 105141 MW; B277209E6F93208E CRC64; MSAPAPQQAP PAQPPPPPPP PAAPAGVTAT PISVQPPPIQ PKPPPPPQQQ PQPAGPVSGP PTPTPAQLLN LGPQPPLYRG PICWNSYCKD PDPNSFGRRG WKVRSGPPFS IYADLCGRCY SQFEQGIYCE TFHSDEGGWR NCESCGRRVH CGCIVSIHKY QLRDAGGVDC AKCARNTRTA MAPPSPVWAS PMHNSQNVAD RKDIPVKSWR PPAGQISSQW RQTNLWSVSS IQSDLQQRLA FEFDRPSGSE KLLPGRTFIH AQERKFDDMH DRPTTPAGMN HIIRERDANG HGQPTNMDPA YPYNLYHRDG PHPNNLHDPS HHGGENDSLS SRKVALPDAS TGVDGFKHDS HHPSILKDDP PSLSVGLASN FASQNGPKDH IRIAPAQQQA QMASSSLQKQ FYSHPVTGYS EFQAQLRNGR PRMDAKARSQ LLPRYWPRIT DQELQHLSND SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ AEGLPLKVQD ASGKEWIFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRIDPEG KLIMGFRKAT NMSSEQEQTT KPANGAPATS EANGKVSAPD SSPNAAISRQ NKVNTETKSS SPVEQAATSK IDKDVSAPKE GPGTASSSPG PVKRKATNLT PKNKRLRMEN EESMELKITW EEAQELLRPP PKAPSIVIVD GHEFEEYEEP PILGRKTYFA TDQSGSNHQW AQCENCSKWR KLPADALMPS KWTCNDNKWD SERSSCEAAQ EISMEELAEL IPIKSGPGGA KKPKSKIEGE AIDASDGLDT LANLAILGEG EALPSQPTTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCMTVRRRF RTLMLRREKR ATTDSPRRKE TGQSSQTVTQ AGSGLQATSA NATNSSKKAV GNADGPEDMA VDHKVTSSPV KNHIDLNSQP ERDDEQSPKS GAAGALSRDN PT // ID K3ZQF4_SETIT Unreviewed; 957 AA. AC K3ZQF4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQL27184.1, ECO:0000313|EnsemblPlants:Si028834m}; GN Name=LOC101783850 {ECO:0000313|EnsemblPlants:Si028834m}; GN ORFNames=SETIT_028834mg {ECO:0000313|EMBL:KQL27184.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si028834m}; RN [1] {ECO:0000313|EMBL:KQL27184.1, ECO:0000313|EnsemblPlants:Si028834m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si028834m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQL27184.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si028834m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si028834m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQL27184.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQL27184.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003529; KQL27184.1; -; Genomic_DNA. DR RefSeq; XP_004958699.1; XM_004958642.3. DR STRING; 4555.Si028834m; -. DR EnsemblPlants; Si028834m; Si028834m; Si028834m.g. DR GeneID; 101783850; -. DR Gramene; Si028834m; Si028834m; Si028834m.g. DR KEGG; sita:101783850; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K3ZQF4; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000004995; Chromosome II. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 364 465 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 625 675 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 364 465 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 957 AA; 105348 MW; E57FB0C37ED46FBF CRC64; MAMAAAGAAV VAKRCMNPAC GAPATAGGGD WRKGWPLRSG GFALLCDKCG LAYEQFVFCD IFHQKESGWR DCSFCGKRLH CGCVASKNSY DLLDSGGVQC VICMRNLAAQ SASGQVVPKL FPCQNNQRIF GKSDELLLGR KFEQSPSLML DSRNDEIAVV NKSNHPFMVK GIEAGQSSSI LRQKEMENGS RQIKWEQPTL SIGDMGRPFL TRSQSALESP QYTRRDDNKD PTTDSTTSES ISEACLSMSL GIANNGNKME ATSTVERPIL SPTTSIAEGR EITTTLSPFQ HAQRARHFLT RPPRVGEGAV FDPTKDIFPH LRVARPPAEG RGRNQLLPRY WPRITDQELQ QISGDSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP LTIQDARGKE WHFQFRFWPN NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IEPGGKLVMG FRKATNTVSL PDSQISAIAN GSLLSETLFS TANENLGVVS GYPGFLQTIK GAADLHPSSL YDHHMNSADG DVSWLKADKF GSRPDEGSLQ FLQKRSRNIG SKSRRFLMDA EDAMELKLTW EEAQEWLRPA PSAKPTIVMI EDYEFEEYDE PPVFAKRSIF TIRATGEQDQ WIQCDDCSKW RRLPLTVIVA SKWTCTDNSW DPKSCSCSAP EELTPKELQS VLQQYEEMRR RKGSYGLKLN VAEMDASSLD ALATAAVFGD VGNQGTASVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKKITWA NRDEPEGSNL SRSPQTLDTT RDSSDVTMFD KVADPNKGHI DLNFHPAVRD DHQGQHGAQQ PRPVSMMGLL EVATRPLDNY MKQNGLTSLA GEQAGGSSST ATVLPAPVES EERTSNEGRV ASVERKREPD AMAVDEAGDN QQDKAADDAP LPPPAAT // ID K4A6M0_SETIT Unreviewed; 684 AA. AC K4A6M0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC101785366 {ECO:0000313|EnsemblPlants:Si034525m}; GN ORFNames=SETIT_034525mg {ECO:0000313|EMBL:KQK88686.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si034525m}; RN [1] {ECO:0000313|EMBL:KQK88686.1, ECO:0000313|EnsemblPlants:Si034525m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si034525m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88686.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si034525m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si034525m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88686.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88686.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88686.1; -; Genomic_DNA. DR RefSeq; XP_004982839.1; XM_004982782.2. DR STRING; 4555.Si034525m; -. DR EnsemblPlants; Si034525m; Si034525m; Si034525m.g. DR GeneID; 101785366; -. DR Gramene; Si034525m; Si034525m; Si034525m.g. DR KEGG; sita:101785366; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; K4A6M0; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 589 667 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 684 AA; 74705 MW; 8FA3332CDE3B32FA CRC64; MKEAGDERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHAHGGGAAE LAAAAGPRGL PPLVLCCVAG VRFLADPETD EVFAKIRLVP VAPSGEADLR DPDELGGDPA DAREKLSSFA KTLTQSDANN GGGFSVPRYC AETIFPKLDY RADPPVQTVL AKDVHGEVWK FRHIYRGTPR RHLLTTGWST FVNQKKLVAG DSIVFLRTEH GELCVGIRRA KRVSCGGMEC MSGWNAPGYG AFSAFLKDEE SKMMKGPGGY MRGMGKVKIA DVVEAASLAS RGQPFEVVYY PRASTPEFVV KAASVQNAMR NHWCPGMRFK MAFETEDSSR ISWFMGTIAS VQVADPIRWS NSPWRLLQVT WDEPDLLQNV KCVNPWLVEL VSSIPPIHLG PFSPPRKKLR MPQHPDFPFD GQLLNPVFHG NPLGPSNSPI CCFPDNAPAG IQGARHAQFG LPLTDHQLNK LHLGLFQGSG FNRLDAITPQ SRISKGFVIT SAPVKESVSC LLTIGTPQGT EKSDDRKKPH IMLFGKPILT EQQMNSGGSR ETFSPEVTGN GSSDGNAQKT GNVSDGSGSS ICIGFSSQGR EASELGLEAG HCKVFMESED VGRTIDLSVF GSYEELYGQL ADMFGIEKAE IMSHLHYRDA AGAVKHTGEE PFSDFMKVAR RLTITERGEG RLQKPLIEYM VERA // ID K4A840_SETIT Unreviewed; 543 AA. AC K4A840; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88066.1, ECO:0000313|EnsemblPlants:Si035046m}; GN Name=LOC101784700 {ECO:0000313|EnsemblPlants:Si035046m}; GN ORFNames=SETIT_035046mg {ECO:0000313|EMBL:KQK88066.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si035046m}; RN [1] {ECO:0000313|EMBL:KQK88066.1, ECO:0000313|EnsemblPlants:Si035046m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si035046m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88066.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si035046m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si035046m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88066.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88066.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88066.1; -; Genomic_DNA. DR RefSeq; XP_004982415.1; XM_004982358.2. DR EnsemblPlants; Si035046m; Si035046m; Si035046m.g. DR GeneID; 101784700; -. DR Gramene; Si035046m; Si035046m; Si035046m.g. DR KEGG; sita:101784700; -. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR InParanoid; K4A840; -. DR OMA; CDDTAES; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 348 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 445 541 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 348 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 445 541 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 543 AA; 61869 MW; DAABE78B1FBE4E74 CRC64; MARTRSGSRT KKSCDCCKRY MDHLDGKDQK MNYFLRRMTT SSKHSMIVPN RFLKHFARKL SGTIKLESPD GSLYDVEVAE RFNKVVLRHG WEAFVDANGI EENDFLLFRH TEQSCVEVLI LDSDGCEKVF PCTGIVNIPS FKERSVDSVD ISSSSHDETT ESSESERFTR CQKGSSYHRR KTAKVTATSS SSKESGDIPS ESESYESDDL QTSPGDDYVL CSRSYLSEAQ EERVVALIRE IQPKVTAFVA IMRKSHVKGP SAFLALPKEY ASAHFPHETT NITLQRPGKS KKWHPKFYRS KDIRLHMLRG QWLDFVRDNH VQVGDICLLL PTKGVRKFAF TVHLLHTTGP HSRVRTSFQS VSSCHGISSP KMASVVHIKE ETTDEEYVSS EGGMHGISNK YLEYKDPGGS FEPPYIISVR SCLSESQKKI VEEKVRAIQC EVPIYVAIMN KCSVSIRYEL EISARYAAAN LPDRRQSMIL RYMGKSWRTQ MVVRSGSRWF LCEGWFQFVC DNGLRVGDVC LFELEKNESK LTMTVHIIFS EQL // ID K4A8R0_SETIT Unreviewed; 509 AA. AC K4A8R0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88072.1, ECO:0000313|EnsemblPlants:Si035266m}; GN Name=LOC101786962 {ECO:0000313|EnsemblPlants:Si035266m}; GN ORFNames=SETIT_035266mg {ECO:0000313|EMBL:KQK88072.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si035266m}; RN [1] {ECO:0000313|EMBL:KQK88072.1, ECO:0000313|EnsemblPlants:Si035266m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si035266m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88072.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si035266m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si035266m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88072.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88072.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88072.1; -; Genomic_DNA. DR EnsemblPlants; Si035266m; Si035266m; Si035266m.g. DR Gramene; Si035266m; Si035266m; Si035266m.g. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR InParanoid; K4A8R0; -. DR OMA; ANSTEMS; -. DR OrthoDB; EOG093606KM; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 248 347 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 410 507 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 248 347 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 410 507 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 509 AA; 57908 MW; 264DB60004F00E6A CRC64; MARNGGSRKK PCDCCKRYLD HLAGKNQNMS CFLRHMTANF KHSMVMPNRF LKHFAGKLSG TIKLESPNGN LYDVEVTERF NKVILRHGWG DFVDAHRIEE NNFLLFRHIE NSLFEVLIFD ADGCEKVFSC AGIKNNRSLQ ENTVDSLYIS SSSCHDTSES SASERLVRCE KGGSSHCGKT AKMDATSSSS ESSGEYNLSE NKSFETDDLQ TNPGPDYVLS RGSYLSEAQE ERVIALIQEI QPESTVYVAV MRKCHIEQPG PYLAIPKEYA FSHCLHERTN VTLQRPGKSK KWHPRFHERK DKRMFMLSGQ WLDFVRDNHV QKEDICLFLP AKGGRRFTFT VYLLRATATY SRGGAAFQKV GSCNGRSSTK MASVAPYIVS SKSCLSQSQK KIVEEMVGAI QSEVPIFVAI MKKINVDVTR RYRLIELGKQ FATSQLPHRG QTVLLQCMKK IWTTKMVIHG GRRRWFLVGG WSTFARDNGL RVGDICLFEL KKTEEELTMK VHIISREQF // ID K4A8S2_SETIT Unreviewed; 508 AA. AC K4A8S2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88067.1, ECO:0000313|EnsemblPlants:Si035278m}; GN ORFNames=SETIT_035278mg {ECO:0000313|EMBL:KQK88067.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si035278m}; RN [1] {ECO:0000313|EMBL:KQK88067.1, ECO:0000313|EnsemblPlants:Si035278m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si035278m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88067.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si035278m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si035278m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88067.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88067.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88067.1; -; Genomic_DNA. DR EnsemblPlants; Si035278m; Si035278m; Si035278m.g. DR Gramene; Si035278m; Si035278m; Si035278m.g. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR InParanoid; K4A8S2; -. DR OMA; MASEVHI; -. DR OrthoDB; EOG09360DT7; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011011; Znf_FYVE_PHD. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF57903; SSF57903; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 231 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 410 506 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 231 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 410 506 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 508 AA; 57283 MW; 5BCF6B9573BB76C2 CRC64; MDILCEVCGD IGFRHLLLCC GDCKHSAIHQ YCLEKVVFDA SLIEWFCYEC LQRRGEVTCI RSLEKVPSER PSSNAHFGSI VHQPITKRVE SARDASNMPY SPNDGCEEVF SCSGIKNIPS VQDRSADSID TSSISQHDIT EPSESSERFT EYQKGSSYPR GKNLKMAAAS SSSEESGEDI PSENVSLASD DLQSPLGADY VLSYRTYLSK AQKVRVMTLI QEIQPEFTVY IATMRKTSVQ PPGPYLGITK EYALAHCPDR STTVTLEMPG KNKKWHPKFY KRDESRKNFL MGQWLDFVRD NHVQEGDIVL LLPTKGGNRS IFTVYLLHET ATHSSMASEV HIEEPTTGEH ASQESGTLEI PHESLESEDS DSLFLPPYFV PCKNLLSKSQ KRIVEERVRA IRSEVPLCVA VMKNNNVGVA QRWMLELGSR YASVYLPTKG QTLILQCGGK TWEAKMMFHN GRRWFINGGW PNFARGNGLR VGDICLFELK KEEKLLTMAV HIIRKELF // ID K4ADA7_SETIT Unreviewed; 293 AA. AC K4ADA7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK92885.1, ECO:0000313|EnsemblPlants:Si036864m}; GN Name=LOC101784039 {ECO:0000313|EnsemblPlants:Si036864m}; GN ORFNames=SETIT_036864mg {ECO:0000313|EMBL:KQK92885.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si036864m}; RN [1] {ECO:0000313|EMBL:KQK92885.1, ECO:0000313|EnsemblPlants:Si036864m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si036864m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK92885.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si036864m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si036864m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK92885.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK92885.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK92885.1; -; Genomic_DNA. DR EnsemblPlants; Si036864m; Si036864m; Si036864m.g. DR Gramene; Si036864m; Si036864m; Si036864m.g. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; K4ADA7; -. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 32380 MW; 590297101DF4F369 CRC64; MEFTAGGLTR PGGGEERTTE QAAAVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD AAANEKGLLL SFEDRTGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRGV GEAARGRLFI DWRRRPDPPV QYHRLPLPSI PYAPWAAHAA VGARTTVLHL PPSPSSFYDY DSHRRYAGYD AYGAGGRQLL FYRPHHQQHP QATMVLDSVP VRIPTTPSQH AEPPPPVASS ASKRVRLFGP EEESGGGRAA PPTQTTMPLQ LPSPPSSSSS SSGKARCSLN LDL // ID K4ADG1_SETIT Unreviewed; 285 AA. AC K4ADG1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK91992.1, ECO:0000313|EnsemblPlants:Si036918m}; GN Name=LOC101783636 {ECO:0000313|EnsemblPlants:Si036918m}; GN ORFNames=SETIT_036918mg {ECO:0000313|EMBL:KQK91992.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si036918m}; RN [1] {ECO:0000313|EMBL:KQK91992.1, ECO:0000313|EnsemblPlants:Si036918m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si036918m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK91992.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si036918m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si036918m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK91992.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK91992.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK91992.1; -; Genomic_DNA. DR RefSeq; XP_004985224.1; XM_004985167.3. DR EnsemblPlants; Si036918m; Si036918m; Si036918m.g. DR GeneID; 101783636; -. DR Gramene; Si036918m; Si036918m; Si036918m.g. DR KEGG; sita:101783636; -. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; K4ADG1; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG093601C8; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 165 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 165 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32214 MW; DFE98C3E153DB70A CRC64; MPAGVGRPRR GSSKEQKAAA NRDGMEEEMA GLSLSDFEFF KILLPGMYEE ALRLPNKFVQ ELGARRDLKL RLAGAGMPLW DVEVFADEKR GDVYLAQGWK KFARAHDLRD GYVLVFRYDG GAATLAITVF DRSTCRKQYV HAGAAGGGKA GRRSLAIAEP SQFTVSLRQC NLGTKQNQYL NVPVEFQDAH GYARRRRVEL RMGGRSWSVN LKRGRRALGD RTALKYGWHQ FCVDNGLEVG DTCFFKVIRE GPCVDDDDDE WEDEWEDDEH VLQVEVRKKD GTMLT // ID K4AEF9_SETIT Unreviewed; 237 AA. AC K4AEF9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK92258.1, ECO:0000313|EnsemblPlants:Si037266m}; GN Name=LOC101769075 {ECO:0000313|EnsemblPlants:Si037266m}; GN ORFNames=SETIT_037266mg {ECO:0000313|EMBL:KQK92258.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si037266m}; RN [1] {ECO:0000313|EMBL:KQK92258.1, ECO:0000313|EnsemblPlants:Si037266m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si037266m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK92258.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si037266m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si037266m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK92258.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK92258.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK92258.1; -; Genomic_DNA. DR RefSeq; XP_004985456.1; XM_004985399.1. DR EnsemblPlants; Si037266m; Si037266m; Si037266m.g. DR GeneID; 101769075; -. DR Gramene; Si037266m; Si037266m; Si037266m.g. DR KEGG; sita:101769075; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; K4AEF9; -. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26437 MW; 1E89EFC4DED94E50 CRC64; MAEVAKQGMS PYEAARERTV LENKRKMEAL NLRHLSAAIK EAPKTPSPMK QKRRRIVEHA VVVPSPPRRS RRVANLPAVK YSEIAPHTAD RMTRSPRKPA DLIYLASRGS ISMKARMEAA TKAEELESQL DPEIPSFVKA MLHSHVVRGF WLGLPSHFCD TYMPKQDSIV TLVDEKDEEF DTNYLAYKKG LSGGWAGFAI SHGLQDGDAA VFQLIKPTTF KVHIIRAASG DGSEEDE // ID K4AG14_SETIT Unreviewed; 163 AA. AC K4AG14; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88068.1, ECO:0000313|EnsemblPlants:Si037821m}; GN ORFNames=SETIT_037821mg {ECO:0000313|EMBL:KQK88068.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si037821m}; RN [1] {ECO:0000313|EMBL:KQK88068.1, ECO:0000313|EnsemblPlants:Si037821m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si037821m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88068.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si037821m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si037821m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88068.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88068.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88068.1; -; Genomic_DNA. DR EnsemblPlants; Si037821m; Si037821m; Si037821m.g. DR Gramene; Si037821m; Si037821m; Si037821m.g. DR InParanoid; K4AG14; -. DR OMA; WARFARD; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 163 AA; 18647 MW; 81B81AF98AEA4D32 CRC64; MTNTSPWKLT CVKFLTILWR AKTLVVYLSL HTLYHVGTLS KPQKKIVEER VRAIQAKFPI CVAVMKNNNG VAQKWMLELG VRYAAAHLPA SGQAVALQCM GKTWITQMVI HNGRRWFLNG GWARFARDNG LRVGDICLFE LKKNKRKLTM KVHIISREQS SLK // ID K4AI59_SETIT Unreviewed; 337 AA. AC K4AI59; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88064.1, ECO:0000313|EnsemblPlants:Si038567m}; GN ORFNames=SETIT_038567mg {ECO:0000313|EMBL:KQK88064.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si038567m}; RN [1] {ECO:0000313|EMBL:KQK88064.1, ECO:0000313|EnsemblPlants:Si038567m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si038567m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88064.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si038567m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si038567m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88064.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88064.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88064.1; -; Genomic_DNA. DR EnsemblPlants; Si038567m; Si038567m; Si038567m.g. DR Gramene; Si038567m; Si038567m; Si038567m.g. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K4AI59; -. DR OMA; PVDMSGR; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 238 337 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 238 337 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK88064.1}. SQ SEQUENCE 337 AA; 38502 MW; 2A6D257B6BB6EA86 CRC64; CGSKMRKPGK ECKVRDAYYF WNDYTDDQDK NFFKILVGDF RKRLVLPDKL ALHFRGKISR SIKLESRSGH TFDVQVANSN LGRLALQSGW ELFVSAHDLK MLDFLVFKYD GISRMKVLIF DASGCEKVPP CFVTKNDING TQSKEESIDV SSNYANIPMK TPETKKKAGK QRDGSKIVNT GSSSSSSESS GGSTSSQEHE AHSVPSYIVP QRTNLTNVQK KKLKEKVGAI CSEIPIYVCV MKKNNISGRY QDMPFSGKYS DEYLPFKERK LMLRHQGESW QVMCRVQVRR GPRKFQKLCK GWARFACDNN LQLGDLCLFE LLKTKKYTMN VHIIREK // ID K4AJM2_SETIT Unreviewed; 291 AA. AC K4AJM2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88063.1, ECO:0000313|EnsemblPlants:Si039093m}; GN Name=LOC101783213 {ECO:0000313|EnsemblPlants:Si039093m}; GN ORFNames=SETIT_039093mg {ECO:0000313|EMBL:KQK88063.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si039093m}; RN [1] {ECO:0000313|EMBL:KQK88063.1, ECO:0000313|EnsemblPlants:Si039093m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si039093m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88063.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si039093m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si039093m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88063.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88063.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88063.1; -; Genomic_DNA. DR EnsemblPlants; Si039093m; Si039093m; Si039093m.g. DR Gramene; Si039093m; Si039093m; Si039093m.g. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K4AJM2; -. DR OMA; WWGNSAG; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK88063.1}. SQ SEQUENCE 291 AA; 33111 MW; 6835C9E46FC318F3 CRC64; GIPDKFVQHF RGRIAKTVKL ESRTGCTFNV EVTKSLGKVV LQTGWKAFVC AHDLKMGDFL VFRYDGTSRL KVWIFDLSCC EKMPPCHVMR SPIRGGGKGE EQIEISRSCD DLPMESTEIK SKAWKQREGS MNLNTSSTSS SDSSGDSLSP EDQKSHSVPS YILPQRTYLT CVQKKKLKER VRAICSKTPI YGCVMKKSSI DAKPQTMDIS REYADVYLPF EDQTLLLQHR GKSWEVGCRI NIHKSNSGTK RLSKGWKQFA RDNNLQLGDL CLFELLENKK YTMNVHIIRI K // ID K4AJW8_SETIT Unreviewed; 515 AA. AC K4AJW8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88071.1, ECO:0000313|EnsemblPlants:Si039191m}; GN ORFNames=SETIT_039191mg {ECO:0000313|EMBL:KQK88071.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si039191m}; RN [1] {ECO:0000313|EMBL:KQK88071.1, ECO:0000313|EnsemblPlants:Si039191m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si039191m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88071.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si039191m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si039191m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88071.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88071.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88071.1; -; Genomic_DNA. DR EnsemblPlants; Si039191m; Si039191m; Si039191m.g. DR Gramene; Si039191m; Si039191m; Si039191m.g. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR InParanoid; K4AJW8; -. DR OMA; MAGGNTH; -. DR OrthoDB; EOG0936089E; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 457 513 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 457 513 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 515 AA; 59000 MW; 38B68735B53EC95B CRC64; MARTRSGGSR MKKPCKCCRR YLDHLEGKNQ PMSYFFRRVD ANSRHRMIIP NRFVKRFAGK LSRIINLESP NGGLYDVEVK ERYNKTVLQR GWEAFVDANR VQENDFLLFH HIEKSRFEVL ILGSDGCEKV FPCAGVRNTP SIQERSLDSV DISSSSCHET TESSEREDTP SRNKSFESGD DLQTPPRDGY VLSCRRYLSE AQKGKVIALI QKIKPEVTVF VSIMRKSNVQ TSGAYLVISK EYALAHFPHE TTFLTLQRPG KSKKWHPRFY IRNDRRVYML RGQWLDFVRD NHVQEGDICL LLPAKSGRKF MLTVYLLRAT DTCPRGGSGT VGFPRVGPFH DRSSAEMTSV VHIKEESTDG EHVSSESSMK EFSEASLNSN DSGGPSDPPY ILPAMSCLSK SQKKIVEAKV RAIQSEVPIY VVIMKRTSVD VTHNKMLYAA AHLPVREQTM VLQCNAKIWN TKMEIRNGHR LFLRVGWPEF VRDNSLRVGD ICLFELKKNE RELTMEVQII SREQF // ID K4AKD6_SETIT Unreviewed; 182 AA. AC K4AKD6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK90326.1, ECO:0000313|EnsemblPlants:Si039359m}; GN Name=LOC101756775 {ECO:0000313|EnsemblPlants:Si039359m}; GN ORFNames=SETIT_039359mg {ECO:0000313|EMBL:KQK90326.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si039359m}; RN [1] {ECO:0000313|EMBL:KQK90326.1, ECO:0000313|EnsemblPlants:Si039359m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si039359m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK90326.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si039359m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si039359m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK90326.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK90326.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK90326.1; -; Genomic_DNA. DR EnsemblPlants; Si039359m; Si039359m; Si039359m.g. DR Gramene; Si039359m; Si039359m; Si039359m.g. DR OMA; MIINEAM; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 182 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 182 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 182 182 {ECO:0000313|EMBL:KQK90326.1}. SQ SEQUENCE 182 AA; 20781 MW; BEC67379655AA80F CRC64; MADAARYEVQ RRRQIEENKR RIEELGLRHL AAAAMPPKAK QLKLKHKARA PGAAAPPRRS GRVANLPDQP DYRENVKKKI VIGPTAAERS YAIAKAKAKE LEGELRADYP TFLKTVSKEH LPEHGKVITL VDEEDDEFDV QYYKGPNDRG YCITSWRGFA TDHKLDDGDC LVFQLIQQRK FK // ID K4AKS4_SETIT Unreviewed; 537 AA. AC K4AKS4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88070.1, ECO:0000313|EnsemblPlants:Si039499m}; GN Name=LOC101753675 {ECO:0000313|EnsemblPlants:Si039499m}; GN ORFNames=SETIT_039499mg {ECO:0000313|EMBL:KQK88070.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si039499m}; RN [1] {ECO:0000313|EMBL:KQK88070.1, ECO:0000313|EnsemblPlants:Si039499m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si039499m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88070.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si039499m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si039499m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88070.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88070.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88070.1; -; Genomic_DNA. DR EnsemblPlants; Si039499m; Si039499m; Si039499m.g. DR Gramene; Si039499m; Si039499m; Si039499m.g. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR InParanoid; K4AKS4; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 478 535 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 478 535 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 537 AA; 60397 MW; 68FE8A57005106A3 CRC64; MSIGNKPCDC CQRYLDHLDE KNQTMSCFLM RMTANTKHSM TIPNRFLKHF AGKLSGTIKL ESANGSLYDV EVTERYRKMV LRHGWEAFVD AHHIEENDSL LFRNIENSVF KVLILDSDGC EKMFCCSGIK TTPNVGKISV DSVDISSSSQ YDTTESSGSE RAARCVKGSS NRHGKTSKMA VTSSSSGGSG DDIPSENESF ESDDLQTPPG ADYVISCRSH LSEEQKERVI ALIQEIQPEI TVYIAVMQKC HVHPPNPFVA ITKEYAFAHF PHGNANVTLH RPGKSKKWHP KFYTRKDRSV YMLRGQWLDF VRDNHVQERD ICLFLPTNGG RFTFTVYLLR ATATHSGRRG AGFQRVGPCL AGPSANMASE IHKEEPTDGE HVSLESDMHE ISHESLESGE DSGGPSQPPY ILPGKSRLSK SQKKIVEERV RDIQCEVPIY VAIMTKSSLA YMQEFGSRYA AAVHLPAKGQ TMVLHCLGKI WKIKMVFQRV RRWFLSGGRP KFVRGNGLRA GDICLFELKK NQKKLTMKVH IISREQL // ID K4ALK6_SETIT Unreviewed; 228 AA. AC K4ALK6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88065.1, ECO:0000313|EnsemblPlants:Si039787m}; GN ORFNames=SETIT_039787mg {ECO:0000313|EMBL:KQK88065.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si039787m}; RN [1] {ECO:0000313|EMBL:KQK88065.1, ECO:0000313|EnsemblPlants:Si039787m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si039787m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88065.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si039787m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si039787m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88065.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88065.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88065.1; -; Genomic_DNA. DR EnsemblPlants; Si039787m; Si039787m; Si039787m.g. DR Gramene; Si039787m; Si039787m; Si039787m.g. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 129 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 129 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:KQK88065.1}. SQ SEQUENCE 228 AA; 26153 MW; 7686714632B20295 CRC64; KRSSTTSREQ RQQSSQDMGS SCRRCKLRAE NAYKNLDDHQ KYFLMLMKGD FQQAMTVPVG FVKSFKGEFR GEIKLETRNG ESYCVGVVKQ PDKVSFSAGW GVFVKTYDLH TDDSFGYEKA TSVVVNDESV PLRVQKSSRD DIEYNFPKQY IVRHLGRKER TIFLQRDSQR YQAKLNIGAV AKLSQGGWRR FVKANGIEVG DICLFELLKD GETCTMNVHI IRSYEVAD // ID K4AM37_SETIT Unreviewed; 275 AA. AC K4AM37; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK90151.1, ECO:0000313|EnsemblPlants:Si039972m}; GN Name=LOC101779059 {ECO:0000313|EnsemblPlants:Si039972m}; GN ORFNames=SETIT_039972mg {ECO:0000313|EMBL:KQK90151.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si039972m}; RN [1] {ECO:0000313|EMBL:KQK90151.1, ECO:0000313|EnsemblPlants:Si039972m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si039972m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK90151.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si039972m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si039972m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK90151.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK90151.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK90151.1; -; Genomic_DNA. DR RefSeq; XP_004983810.1; XM_004983753.3. DR EnsemblPlants; Si039972m; Si039972m; Si039972m.g. DR GeneID; 101779059; -. DR Gramene; Si039972m; Si039972m; Si039972m.g. DR KEGG; sita:101779059; -. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR InParanoid; K4AM37; -. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 275 AA; 29417 MW; 87A801472B7B8E27 CRC64; MEFAPAHGGV EDSERARGAG AAWVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD ASAAAAAAGT GGKGLVLSFE DRSGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VLFSRGAGQG PPRARLFIDF RRRRQDLAFL QPPLASAQRF LPLPSVPICP WQDYGAYGAS AAPVPSSRHV LFLRPQVPAA VVLASVPVSV AASTVEATRS KRVRLFGVNL DCPPDGEDGA GVTRAASTLL QLPSPSSSTS SSTAGKDACS LDLGL // ID K4AM86_SETIT Unreviewed; 351 AA. AC K4AM86; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KQK88059.1, ECO:0000313|EnsemblPlants:Si040023m}; GN Name=LOC101782405 {ECO:0000313|EnsemblPlants:Si040023m}; GN ORFNames=SETIT_040023mg {ECO:0000313|EMBL:KQK88059.1}; OS Setaria italica (Foxtail millet) (Panicum italicum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria. OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:Si040023m}; RN [1] {ECO:0000313|EMBL:KQK88059.1, ECO:0000313|EnsemblPlants:Si040023m, ECO:0000313|Proteomes:UP000004995} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:Si040023m, RC ECO:0000313|Proteomes:UP000004995}, and RC Yugu1 {ECO:0000313|EMBL:KQK88059.1}; RX PubMed=22580951; DOI=10.1038/nbt.2196; RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J., RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., RA Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., RA Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C.Y., RA Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P.C., RA Panaud O., Kellogg E.A., Brutnell T.P., Doust A.N., Tuskan G.A., RA Rokhsar D., Devos K.M.; RT "Reference genome sequence of the model plant Setaria."; RL Nat. Biotechnol. 30:555-561(2012). RN [2] {ECO:0000313|EnsemblPlants:Si040023m} RP IDENTIFICATION. RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:Si040023m}; RG EnsemblPlants; RL Submitted (OCT-2012) to UniProtKB. RN [3] {ECO:0000313|EMBL:KQK88059.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=Yugu1 {ECO:0000313|EMBL:KQK88059.1}; RA Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM003536; KQK88059.1; -; Genomic_DNA. DR EnsemblPlants; Si040023m; Si040023m; Si040023m.g. DR Gramene; Si040023m; Si040023m; Si040023m.g. DR eggNOG; ENOG410JU89; Eukaryota. DR eggNOG; ENOG4110744; LUCA. DR InParanoid; K4AM86; -. DR OMA; HKNSSRC; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000004995; Chromosome IX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004995}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004995}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 343 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 343 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 39073 MW; CA808D90CD23C6E9 CRC64; MADDQKHFFK PMVGGFAETM SIPARFANNF NGHISEVVSL KSPSGKTWSI GVGNNDTDEV FLQSGWKDFV SAHSIAEGDY LLFKYSGVSS FDVLVFDSSG CEKTSPHFAK NHGYERIEGS AGVEGARRGS HKFKGGKDCT PQLLPSDEDE DGDDDSDLEL AVQKNTSKSI SKSCKRKLYR DIEQVHCQVK SDEDDLELDH EGDAPTGYYF CKNGPVSDYH LTEEDREEIS SIRIPAQSTN PVFVQVMHPS HVRAQKPGVV SISSEFASKY LGAGRGDIIL RRVSIKGKWH ARFTCNRFSR GLTGRGWCGF VGDNGLLDHD VCLFELMKGQ RRPTMTVHVL RKVRGHFVLL R // ID K4AUF5_SOLLC Unreviewed; 284 AA. AC K4AUF5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g015210.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g015210.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g015210.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g015210.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4AUF5; -. DR EnsemblPlants; Solyc01g015210.1.1; Solyc01g015210.1.1; Solyc01g015210.1. DR Gramene; Solyc01g015210.1.1; Solyc01g015210.1.1; Solyc01g015210.1. DR InParanoid; K4AUF5; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 182 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 182 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 32630 MW; 90A6DD3FBE261A8D CRC64; MVNSSSNYPN FIKIICSSDE LCHLRNPLVF AKSHCKNMLS PVFLESPHGK SWEVEVIMSQ DEIWIAKGWK SFCPYYSISV KSLLMFTYIP CSHFDVTIYD QSTSIIEYPI HQDIEVDEEE DVIPFFQYNA IAIEEDIPVY LQANANVIEQ DKEVGEANSR SEQVNPKIYR SLHNLLNING DKLHFEMVIK KAHSTYMTIP LRYSQGTYII NMANMRLVSE EGEEWRVDIG YNAGKVIIKG GWSAFQKDNK ISNGETWRFK LIRGPIANVL QVHKNPTLLL IATN // ID K4AWE0_SOLLC Unreviewed; 97 AA. AC K4AWE0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g060370.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g060370.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g060370.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g060370.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4AWE0; -. DR EnsemblPlants; Solyc01g060370.1.1; Solyc01g060370.1.1; Solyc01g060370.1. DR Gramene; Solyc01g060370.1.1; Solyc01g060370.1.1; Solyc01g060370.1. DR InParanoid; K4AWE0; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 75 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 75 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 97 AA; 10814 MW; 1A076E336D2022F2 CRC64; MNKELPFAGG PGVLTYSGKK WNLFFGGAKT KYKFSTGWKI FGDDNNLKEG DGIAFELSEC NPDNVEFKIQ ILRENFPAEL VPEDVEGINT DNPIIIN // ID K4AXK1_SOLLC Unreviewed; 109 AA. AC K4AXK1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g079560.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g079560.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g079560.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g079560.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004229559.3; XM_004229511.3. DR PaxDb; K4AXK1; -. DR EnsemblPlants; Solyc01g079560.2.1; Solyc01g079560.2.1; Solyc01g079560.2. DR GeneID; 101243637; -. DR Gramene; Solyc01g079560.2.1; Solyc01g079560.2.1; Solyc01g079560.2. DR InParanoid; K4AXK1; -. DR OMA; ENHIEMA; -. DR OrthoDB; EOG09360WNZ; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 109 AA; 12725 MW; 33560A1FD6A7E80E CRC64; MSNFGGNPND ELSFYKIVLD PRMEELRVPS TLVNRMREET MGEVLLKCGD GDKYWNITTR EDGNSMYFHG GWKEFALENH IQMTQVLFFN YDGAKTFTVR IFDKNGLEK // ID K4AY32_SOLLC Unreviewed; 167 AA. AC K4AY32; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g081400.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g081400.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g081400.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g081400.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004229533.1; XM_004229485.3. DR UniGene; Les.23945; -. DR PaxDb; K4AY32; -. DR EnsemblPlants; Solyc01g081400.2.1; Solyc01g081400.2.1; Solyc01g081400.2. DR GeneID; 101260266; -. DR Gramene; Solyc01g081400.2.1; Solyc01g081400.2.1; Solyc01g081400.2. DR KEGG; sly:101260266; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; K4AY32; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 167 AA; 18429 MW; 0EC619C26771290E CRC64; MESGSSFGRV SNHSHSYSTM KQPEIESSGI TEIDNGEYWP LSGKPYVDLI LTKTGVKPSY SMYLPKKMRS ELPSAGARAV PAVLTCGQKK WDMSYGGVKS GHKFCIEWRK FVDDNNLKEG DGLVFELVEC SASKIEFRVQ ILSGDFPAEL KPEDEEGANS DNPILLG // ID K4AZX7_SOLLC Unreviewed; 179 AA. AC K4AZX7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g095880.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g095880.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g095880.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g095880.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4AZX7; -. DR EnsemblPlants; Solyc01g095880.1.1; Solyc01g095880.1.1; Solyc01g095880.1. DR Gramene; Solyc01g095880.1.1; Solyc01g095880.1.1; Solyc01g095880.1. DR InParanoid; K4AZX7; -. DR OMA; CFAVNII; -. DR OrthoDB; EOG09360TOV; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 179 AA; 20750 MW; 84F271EDE29302D5 CRC64; MTTIRLFGNN ITVLRLFGVQ FSPLNNNNVQ QRDDRVMNMP DLLPPSLRLN IESVRGSEPV HMGRKYLENS DTNSSLSRFL IPAECATNLL QHMTESEREK IQSDDDKGID ISVMDPKGDL HNMKFTEWKS LKRLVFNRGW NKLVENNQLH KGDLLSLWHY RSFNNKPCFA VNIIPKPKQ // ID K4AZZ6_SOLLC Unreviewed; 689 AA. AC K4AZZ6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g096070.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g096070.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g096070.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc01g096070.2.1; -. DR PaxDb; K4AZZ6; -. DR EnsemblPlants; Solyc01g096070.2.1; Solyc01g096070.2.1; Solyc01g096070.2. DR Gramene; Solyc01g096070.2.1; Solyc01g096070.2.1; Solyc01g096070.2. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; K4AZZ6; -. DR OMA; KMSFEGE; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 689 AA; 76964 MW; AC978761F20FEB66 CRC64; MNLGMGTEDL YRDLWKACAG PLVDVPREGE RVYYFPQGHI EQLEASTNQA VNQQIPQFNL ASKILCHVFH VQLLAETETD EVYAQITLHP EAEQEEPSKP DPCPPDLPKR TVHSFCKILT ASDTSTHGGF SVLRKHANEC LPQLDMTQAT PTQDLVAKDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRDDSGELR VGVRRLARQQ SPIPQSVISS QSMHLGVLAT ASHAITTQTR FVVYYKPRTS QFIVGLNKYL EAVSHGFSVG MRFRMRFEGE DSPERRFTGT IVGTGDISSQ WSESKWRSLK IQWDEPASMV RPDRVSPWEI EPFVASTCVD VAQPGIKSKR PRPLDLPRSE IAVASAASPF WCPGSGLTLE VSHLGGITEV QSRDNQLFWS SKQSSSLSNG MSNTSCRTHL SGAWQHNMLA NGSLNLLRDS IEDNKQLITR SALLDYGSPM SSRVSSGLLH DQVNRGSKHV ISSACRLFGI DLRNNSNNTP SKAKEMLGPN ITSNCADEAP VVHDESEVDK DQNVGHLNPS EEKKQFQLEA LPKDTQKQGP TSSRTRTKVQ MEGVCVGRAV DLTALSGYDD LISELEKIFD IKGELCPRNK WEVVYTDDEG DMMLVGDDPW LEFCKMVRRI FIYSSEEVKK MTPRCKLPIL SLEGEGTMPS VDSELKAEG // ID K4B067_SOLLC Unreviewed; 92 AA. AC K4B067; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g096790.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g096790.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g096790.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g096790.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B067; -. DR EnsemblPlants; Solyc01g096790.2.1; Solyc01g096790.2.1; Solyc01g096790.2. DR Gramene; Solyc01g096790.2.1; Solyc01g096790.2.1; Solyc01g096790.2. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 92 AA; 10563 MW; 4D27A91EF0A0299B CRC64; MKERSKIKDL CGNVWDVCIE KSEDGVVTFI GKGWEDFIKY QSLKNGYFLI FIYDDERDSS FTVKVFSTNG SKKSVPMTIQ NTKGEDHVIV VE // ID K4B1N1_SOLLC Unreviewed; 654 AA. AC K4B1N1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g103050.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g103050.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g103050.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; NP_001234871.2; NM_001247942.2. DR UniGene; Les.5323; -. DR STRING; 4081.Solyc01g103050.2.1; -. DR PaxDb; K4B1N1; -. DR EnsemblPlants; Solyc01g103050.2.1; Solyc01g103050.2.1; Solyc01g103050.2. DR GeneID; 100736509; -. DR Gramene; Solyc01g103050.2.1; Solyc01g103050.2.1; Solyc01g103050.2. DR KEGG; sly:100736509; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR InParanoid; K4B1N1; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 633 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 654 AA; 72605 MW; 197302ED91D39477 CRC64; MAHVAANHFG GGTHPGASAN NALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST HQGVDQHLPS FNLPAKILCK VMNVQLRAES ETDEVYAQIT LLPEPDQGEI TSPDPPLPEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA SDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRGDSG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIMT GTLFSVFYKP RTSQSEFIVS VNKYLEARNH KLSVGMRFKM RFEGEEVPER RFSGTIVGVG DNPSSRWPDS EWRSLKVHWD EPSSILRPDR VSPWDMEPLV AATPTNTQPP QRNKRARPSV LPSPVQELPA LGMWKSPVDS PSSFSYCDPS RGRDLYPSPK LSSAAKGLGY GENGSMPLST KTMYWSSQSE TCTESVAPAS EKRPANGCRL FGIELLDCPT IDESSSVAMP SAVVEDQPVP SLNVDSDRNS EPSNPIPSVS CEPEKSSLRS THESQSKQIR SCTKVHMQGK AVGRAVDLTR LDSYEDLLKK LEVMFEIEGE LRGSTKKWQV VYTDDEDDMM MVGDDPWHEF CSMVRKIYVY TAEEAKKLSP KIKLPVVDVK PVSDGATVGN NEKA // ID K4B2J3_SOLLC Unreviewed; 336 AA. AC K4B2J3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g106250.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g106250.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g106250.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g106250.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004230633.2; XM_004230585.3. DR RefSeq; XP_004231373.1; XM_004231325.3. DR RefSeq; XP_019067400.1; XM_019211855.1. DR RefSeq; XP_019067402.1; XM_019211857.1. DR EnsemblPlants; Solyc01g106230.2.1; Solyc01g106230.2.1; Solyc01g106230.2. DR EnsemblPlants; Solyc01g106250.2.1; Solyc01g106250.2.1; Solyc01g106250.2. DR GeneID; 101244128; -. DR GeneID; 101250170; -. DR Gramene; Solyc01g106230.2.1; Solyc01g106230.2.1; Solyc01g106230.2. DR Gramene; Solyc01g106250.2.1; Solyc01g106250.2.1; Solyc01g106250.2. DR KEGG; sly:101244128; -. DR KEGG; sly:101250170; -. DR eggNOG; ENOG410JP1W; Eukaryota. DR eggNOG; ENOG41119B4; LUCA. DR OMA; NDHCICE; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 231 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 39540 MW; 31DCB09928C82CCF CRC64; MEKGFVKIFS PENSGKRLKI PTSFTYYKNR KLPMKINLRD RFGNMWPVGV NKIGGNLYFQ YGWEKFIEDN SVEVGDFLVF DYDGNKMFDF KLLGRTKCEK NGVGGLKAEE MIVEHQKSRE SKEKNWASDS CNSFSSYDND VEYMGERDED EDEDEDKDEE YKETKKVACY VEDEEEDDED EEEEDEGENQ RTNTHKKEAL RSKAFACKVR NRHDHFGVDI FKSGRATQPK NPYFVAKIRS KRRDQLYVPV DVVKDYKLEL PSSMTIRDSI GREFVTKLNK WKDGRIWLVG GWRSLCRWNL VEKNDHCICE FVRGKRNKDL HLRVQVLREG ESSVTL // ID K4B328_SOLLC Unreviewed; 295 AA. AC K4B328; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108120.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g108120.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g108120.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g108120.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004230781.1; XM_004230733.3. DR RefSeq; XP_010315232.1; XM_010316930.2. DR UniGene; Les.23362; -. DR PaxDb; K4B328; -. DR EnsemblPlants; Solyc01g108120.2.1; Solyc01g108120.2.1; Solyc01g108120.2. DR GeneID; 101264679; -. DR Gramene; Solyc01g108120.2.1; Solyc01g108120.2.1; Solyc01g108120.2. DR KEGG; sly:101264679; -. DR InParanoid; K4B328; -. DR OMA; MPRHDIT; -. DR OrthoDB; EOG093614ZL; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33702 MW; 05846EF9D6BE9F3F CRC64; MKDRSLELKG WHKQVVCKKP KKLGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPVH QRQHSISMKQ VGIKRQRLSS QEGDDYSTEN MLHKHSHSTN MFKNLDLPSK GLAYETLTIV DAVKASKLSD PPNGTFSSWN TRPTELEQLE VRPFSSGYSI EPALTLSGAE MIFRP // ID K4B329_SOLLC Unreviewed; 336 AA. AC K4B329; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108130.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g108130.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g108130.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g108130.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004230782.1; XM_004230734.3. DR UniGene; Les.12275; -. DR PaxDb; K4B329; -. DR EnsemblPlants; Solyc01g108130.2.1; Solyc01g108130.2.1; Solyc01g108130.2. DR GeneID; 101264981; -. DR Gramene; Solyc01g108130.2.1; Solyc01g108130.2.1; Solyc01g108130.2. DR KEGG; sly:101264981; -. DR InParanoid; K4B329; -. DR OMA; SCKKRQQ; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 38579 MW; E91EF8A0783DE0D1 CRC64; MEERNFIPVK RRTKSCKKRQ QQVEPHTLKS TSHSSASTST QTDPLSMIKT VQLDRKKMIP KKPRSVKSKA KQVKSNHPRK AESHSIKRKG SKRTRINDLY DDVEAKYSVM ERAEKVLSSL PDEFPSFAKC MLPSNVAHGF WLHLPKSFCN MHLPSSDTTV ILVDEWGNEY KTSYLLERNG LSAGWRGFSI SHRLLKGDLL IFRLIEPCKM KVYIVRVNGQ EVVDAALCLM YWETLNTSTE LDLVRKDKRK RKKAKHLAEP FFVDLSKPKE HVQNDSHCTV DLNVSPSEHR SENNSEDLDS EVLQGSDVTN RLQSNEICCS ETSFLHDNPH KSVDCR // ID K4B330_SOLLC Unreviewed; 224 AA. AC K4B330; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108140.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g108140.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g108140.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g108140.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004230784.1; XM_004230736.3. DR UniGene; Les.8747; -. DR PaxDb; K4B330; -. DR EnsemblPlants; Solyc01g108140.2.1; Solyc01g108140.2.1; Solyc01g108140.2. DR GeneID; 101265591; -. DR Gramene; Solyc01g108140.2.1; Solyc01g108140.2.1; Solyc01g108140.2. DR KEGG; sly:101265591; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; K4B330; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 1 35 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 224 AA; 25961 MW; A8496B3CB35A3B19 CRC64; MAELEKKLTY EECRLKRIEE NKKRWQELKL TMLAEDVHNA TNPKPSPMKK AKPTVRQEVD RSAVRRSNRV ADKPPPNYKE VPIEPLGRPR SYKRKDLLNR VYAADEDRQY AIGRAEQLQS ELDVDFPSFV KPMLQSHVTG GFWLGLPVHF CKTHLPKHDE YITLVDENGD EFQTKYLALK TGLSGGWRGY ALDHELIDGD ALVFQLVAPT RFKVYIIRVN QVED // ID K4B3A7_SOLLC Unreviewed; 285 AA. AC K4B3A7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108930.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g108930.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g108930.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g108930.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc01g108930.2.1; -. DR PaxDb; K4B3A7; -. DR EnsemblPlants; Solyc01g108930.2.1; Solyc01g108930.2.1; Solyc01g108930.2. DR Gramene; Solyc01g108930.2.1; Solyc01g108930.2.1; Solyc01g108930.2. DR eggNOG; ENOG410JESD; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; K4B3A7; -. DR OMA; GSSWRID; -. DR OrthoDB; EOG09360YHN; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 180 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 32498 MW; 34649684C3A063C4 CRC64; MENSLLKIDK RAIFYKVFCP SITNELRIPA HFLRHVSEES PDKATLKCLS GGTWNVKLQC DEDGLLIQKG WKKFQKNNQL ENGEYLVFRY DGALQFTIRI FSKNGLERQV KSTNMVENQQ ASIDGGSKRK RPEKFPKKTC ANGENETEDV CCVSLEHETR RKRAALVTEE DLLTPNIPQF VKCLKGYNVK KSCFLYVPRW FSEQLSTSGN KRAAVLRNSE GKGWKVNCIT QNGYHAFCGG WKQFVSDNNL KEGQVCVFQL VNANELKVSV FNDPSESLLK LAAQR // ID K4B3A8_SOLLC Unreviewed; 372 AA. AC K4B3A8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108940.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g108940.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g108940.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g108940.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B3A8; -. DR EnsemblPlants; Solyc01g108940.1.1; Solyc01g108940.1.1; Solyc01g108940.1. DR Gramene; Solyc01g108940.1.1; Solyc01g108940.1.1; Solyc01g108940.1. DR eggNOG; ENOG410JP1W; Eukaryota. DR eggNOG; ENOG41119B4; LUCA. DR InParanoid; K4B3A8; -. DR OMA; YMIEEEE; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 143 191 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 372 AA; 43605 MW; 574FCB92F830008E CRC64; MEKGFFRIFN PESSAKRMKI PSSYATYKNG KLPRNVFFRD RFNNMWPMGV TKIEGALYFE NGWKKFIEDN NTLEYGDFMI FDYDGNETFD FKVLEMSGCV KEGAKCEKKK EVYVEHRKSV EPKEKNRIGD NNDSSSDDDN ANNYMIEEEE SNVKEEVEKE EEEDREEKET MEEVEDEAEE EEDEEEIETT QTFKKRRSGS KAGRRKAITC KVRNMIDRHG IDIFRSGSAT KPKNPYFVAK IIAKRRNQQY VPIDVVRDYK LELPPSMIIR DSAGREFETK VKYWKDGRIW LVGGWRSICR WNLVEKNDSL QFTTRIFSNN GLERQVKSTD MIKNQQASIY DRGSSVKGQK NTLTLQNSLN RLLLTVKATQ LK // ID K4B3A9_SOLLC Unreviewed; 347 AA. AC K4B3A9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108950.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc01g108950.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc01g108950.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc01g108950.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B3A9; -. DR EnsemblPlants; Solyc01g108950.1.1; Solyc01g108950.1.1; Solyc01g108950.1. DR Gramene; Solyc01g108950.1.1; Solyc01g108950.1.1; Solyc01g108950.1. DR eggNOG; ENOG410JP1W; Eukaryota. DR eggNOG; ENOG41119B4; LUCA. DR InParanoid; K4B3A9; -. DR OMA; VECELLH; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000004994; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 145 177 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 347 AA; 40702 MW; C19760530EC2939B CRC64; MEKGFFKAFN PQTSAKRMKI PTAYTNYKNG KLPRKVFLRN QFSNMSWPVR VIKIEKDLYF LNGWEKFIED NNLEFGNIII FDYDGNEIFD IKLLEPNGCI KNGAKCDNKK EEVNVEHQQS IEPKEKNKTR DNNNSSFDDD STDNYMVEEE DNDEEEVENE EEEDNEQKGE EKETEEEVDE GEEDETEEEV VERKENETDG EDTSASKAGR RKAITCKVRN VHDKYGADIF RSGRATQPKN PYFVAKMRAK MRNQLYVPID VVRDYKLELP PTMIIRDSVG REFETKVNKW SNGTTWLVGG WRNLCRWNLV EKDDRCICEF VRGKCGRVLY LQIQVLYEGS NSHRNNK // ID K4B4X6_SOLLC Unreviewed; 1317 AA. AC K4B4X6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g021260.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g021260.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g021260.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g021260.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B4X6; -. DR EnsemblPlants; Solyc02g021260.1.1; Solyc02g021260.1.1; Solyc02g021260.1. DR Gramene; Solyc02g021260.1.1; Solyc02g021260.1.1; Solyc02g021260.1. DR eggNOG; ENOG410JDIP; Eukaryota. DR eggNOG; ENOG4111D0V; LUCA. DR OMA; SFMQPSY; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 186 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 402 496 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 618 712 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1019 1114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1219 1314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 186 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 402 496 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 618 712 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1019 1114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1219 1314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1317 AA; 147503 MW; 4A90595152D9703D CRC64; MASSSSTKNN TVVQSRFIKI ILFPHECIHL SIPHDFERRC CNDILSPVHL EVPTGQVWEV ELRHSEAEIE YPYSSRTFHF HETHHAPIID LSESDVDIME DTPRRQKLKE KVVDHSLENL CYGQISKRKR HGDDVASPSF TKKVQNCRIH KKDSKSVYDQ NKTVMEKESS TAYQQAKAFK SKNPFIISFM QPSYVSASFN LSIPLKFARK YFLENNGNLV LRVPGIGSWS VKCTLGMTNG KVGSGWKAFV QDNKLKVGDV CVFEVLKGQL FVDVIIFRAA GSTLMHNIVA EVPRVPCSQP KVVQTKKSKQ HTGGSYGLNL KIKEEQGEGT EILGHCPSGR GSKRKQPEVD AVVPSFTKKA QNCRIHKKDS KSVYDQNKTV MEKESSTAYQ QAKAFKYKNP FTISFMQPSY VSASFNLSIP LKFARKYFLE NNGNLVLRVP GIGSWSVKCT LGMTNGKVGS GWKAFVQDNK LKVGDVCVFE VLKGQLFVDV IIFRAAGSTL MHNIVAEVSR VPYSQPKVVQ TKKSKQHTGG SYGLNLKIKV EQGEGTEILG HCPSGRGSKR KQSEVDAVVP SFTKKAQNCR IHKKDSKSVY DQNKTVMEKE SSTAYQQAKA FKSKNPFTIS FMQPSYVSAS FNLSIPLKFA RKYFLENNGN LVLRVPGIGS WSVKCTLGMT NGKVGSGWKA FVQDNKLKVG DICVFEVLKG QLFVDVIIFR VAGSTLMHNI VAEVPRVPCS QPKVVQTKKS KQHTGGSYGL NLKIKEEQGE GTEILGHCPS GRGSKRKQPE VDAVVSSFTR KTKKSGGSCG LHKKQSKIVY DKNKTVTDKK SSIAYQRAKA FKSKNPFIVS FMQPSYISKH YILKIWSAFA RKYFLENDGN LVLRVSGSGS WSVKCTITTA MIKGGQLFVD VTIFRAAGSI IVAEVPGRSD RKSKVIKEEH GKGTEIEHSV KVLGHCPLGN DSKRRRPARK AEDVASPSFT RKPKKSGESC RMHKQQTKMV NAKRKTVLDK EMTIAYQRAK AFRSKNPFVI YFMQPSYVSR PYNLHMTFSY AQKYLWEKCG DLVLRAAGRG SWSVKYDLGL PEGRIRLSWR AFVLDNKLKS GDVCVFELIK GTQPFLDVII FRANERKPKH TTDGGVSGFR NKIIKTENSV PCPRTKIDHS RKHNLEKKHK GDSDGFITSK VKEELREGTL RHGQQSTSFC MGTVVAKEMV LAYQKAKAFT SENPFFLSFM QPSYVSLARG PIQLSIASSV ARKFFSTRQS DVVLEVSSKR RWTVKCSVGI KTAKFSCGWK EFVVDNKLKV GDVCIFEWTG RPNLVFNVII FPSCGGI // ID K4B557_SOLLC Unreviewed; 345 AA. AC K4B557; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g026080.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g026080.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g026080.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g026080.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004231660.1; XM_004231612.3. DR PaxDb; K4B557; -. DR EnsemblPlants; Solyc02g026080.1.1; Solyc02g026080.1.1; Solyc02g026080.1. DR GeneID; 101253543; -. DR Gramene; Solyc02g026080.1.1; Solyc02g026080.1.1; Solyc02g026080.1. DR KEGG; sly:101253543; -. DR eggNOG; ENOG410J303; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; K4B557; -. DR OMA; HFPEFIN; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 238 337 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 238 337 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 40228 MW; B2147D2AA1274A21 CRC64; MEKGFFKVFN PETSAKWIKI PIGYTKYKNG KIPRKVSLRD QYGNMWPIRV TKQGKDIYFK YGWEKFIEDN NVEFADFLIF DYDGKGTFDF KLLGMNGCVK NGSGGKNKRE EMNVEHGKSV DLKEKTRGSD RSNSSFDYDS DEHYMVEEDV EIKEETHKGA SYSKCRYMEE EVDEKQEGGG KEQKDEDEEE DEKVGTYTEK VQHSKVGCQK VNVCRVRDIP EHYGADIFKS GRVTQPKNPY FVAKIQERIR DKLYIPMEVI RDYKLELPSR MIIRDSAGRE FETRVSKWTD GRVWLFGGWI KLGRLNLVEK DDRYICELVR GNCGKALYLQ VQVLHEGSSS HPDNK // ID K4B5F3_SOLLC Unreviewed; 108 AA. AC K4B5F3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g032070.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g032070.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g032070.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g032070.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B5F3; -. DR EnsemblPlants; Solyc02g032070.1.1; Solyc02g032070.1.1; Solyc02g032070.1. DR Gramene; Solyc02g032070.1.1; Solyc02g032070.1.1; Solyc02g032070.1. DR InParanoid; K4B5F3; -. DR OMA; EASYNTD; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 108 AA; 11958 MW; 208C42ADEC00DBA6 CRC64; MEGGDSGTTV LVGPSGNVWP VDLIQQDDGL FFNNGWVSFV KDHCLETGDS LVFRYDADLH FIVQVFDESS CDKEASYNTD CSQEATDLYN LALKKRDRGN SVLGNEKT // ID K4B5U7_SOLLC Unreviewed; 842 AA. AC K4B5U7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g037530.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g037530.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g037530.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004231633.1; XM_004231585.3. DR UniGene; Les.8405; -. DR STRING; 4081.Solyc02g037530.2.1; -. DR PaxDb; K4B5U7; -. DR EnsemblPlants; Solyc02g037530.2.1; Solyc02g037530.2.1; Solyc02g037530.2. DR GeneID; 100301945; -. DR Gramene; Solyc02g037530.2.1; Solyc02g037530.2.1; Solyc02g037530.2. DR KEGG; sly:100301945; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; K4B5U7; -. DR OMA; PHHQYLQ; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 716 800 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 842 AA; 94277 MW; C38E7F33ECF569ED CRC64; MKLSTSGMGQ QAHEGGEKKC LNSELWHACA GPLVCLPTVG SRVVYFPQGH SEQVAATTNK EVDAHIPNYP NLSPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKD TYLPVEFGIP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QTPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAV RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFNVFFNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI GDLDPVRWAN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPFYQ GTSSYQDSNN EAINRMSWLR GNAGELGHHS MNLQSFGMLP WMQQRVDSTI LPNDINQHYQ AMLATGLQSF GSGDLLKQQL MQFQQPVQYL QHASTENSIL HQQQQQQQQI MQQAVHQHML PAQTQMLSEN LQRQSQHQSN NQSEEQAHQH TYQEAFQLPH DQLQQRQPSN VTSPFLKADF ADLTSKFSAS VAPSGVQNML GSLCSEGSNN SLNINRTGQS VIIEQSPQQS WMSKFTESQL NTCSNSSSLP TYGKDTSNPR GNCSLDSQNQ ALFGANIDSS GHLLPTTVSN VTTTCADMSL MPLGASGYQN SLYGYVQDSS ELLHNAGQID PPNATHTFVK VYKSGCVGRS LDITQFHSYH ELRRELGQMF GIEGFLEDPQ RSGWQLVFVD RENDILLLGD DPWEAFVNNV WYIKILSPED VQKLGKEEAE SLNRGAVERM SSTNADDRDL ISGMPSLGSL EY // ID K4B626_SOLLC Unreviewed; 122 AA. AC K4B626; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g055370.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g055370.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g055370.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g055370.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004231728.1; XM_004231680.3. DR PaxDb; K4B626; -. DR EnsemblPlants; Solyc02g055370.2.1; Solyc02g055370.2.1; Solyc02g055370.2. DR GeneID; 101246296; -. DR Gramene; Solyc02g055370.2.1; Solyc02g055370.2.1; Solyc02g055370.2. DR KEGG; sly:101246296; -. DR InParanoid; K4B626; -. DR OMA; EEGSWIE; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 14574 MW; 84F96CDC312DDFFA CRC64; MEIPPKKPHF FKPILPGFKN GLKIPLGFLK YLKRHDQHEH AILTTDDKKW LVKVNGRRLE EGSWIEFVEE LNLKVGDVLV FKHEGDMEFD VFKFDLSHHC DKEYAMYQEE DEDEDEEDED KL // ID K4B6W5_SOLLC Unreviewed; 227 AA. AC K4B6W5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g065310.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g065310.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g065310.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g065310.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B6W5; -. DR EnsemblPlants; Solyc02g065310.1.1; Solyc02g065310.1.1; Solyc02g065310.1. DR Gramene; Solyc02g065310.1.1; Solyc02g065310.1.1; Solyc02g065310.1. DR InParanoid; K4B6W5; -. DR OMA; PKESSAI; -. DR OrthoDB; EOG09361868; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 33 60 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 227 AA; 26049 MW; 76B6D65B469FD6BC CRC64; MLIFYLVEKS TFHVLHYSKK PRTNIRHFEE LSSEDEVENV EEKEDEEENV EASRKSKKVK TEPKESSAID NEGCKMQSQQ SSVIYDVRKT VMDKEKAIAY QRAKATFKSK NPFFISFMHP SYISRSSNHL CIMLRFARTY IPENCSNIML RVAGRGSWPV TYSTGKAQAK ISIGWEAFVL DNKLKVGDVC VFEVIKGTQI FMNVTIFRAA GSMPMQETDG QFVVSFH // ID K4B6W8_SOLLC Unreviewed; 278 AA. AC K4B6W8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g065340.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g065340.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g065340.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g065340.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B6W8; -. DR EnsemblPlants; Solyc02g065340.1.1; Solyc02g065340.1.1; Solyc02g065340.1. DR Gramene; Solyc02g065340.1.1; Solyc02g065340.1.1; Solyc02g065340.1. DR InParanoid; K4B6W8; -. DR OMA; FICEGDW; -. DR OrthoDB; EOG093616E9; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 32296 MW; C1F5D3D63FA26625 CRC64; MLVDPNKHPS FCKLLFKQGF MDKIMPPIFI KENKKLLAKT CLLKTNVVGM SWETKIVREN SNYFICEGDW PQFVVHHKLE LGDILIFFLI DKSTFHVLPY SQKTFKNSSG RGAFQELTSS SEEEHDVGIA RKLKKMKMEQ KESSGVVKKE EAEGGKEENV PKTTRFSVIN INNKDPYFEM VVRKTHSFFM TIPKSFAIWT GITKMKKMRL VNGNGNKWKL VDIVHTQQRV YMKRGWAGFR TLNRIGNGQT CRFKLIKENC CEYSVLQVQK IHKSKCLK // ID K4B6W9_SOLLC Unreviewed; 331 AA. AC K4B6W9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g065350.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g065350.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g065350.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g065350.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004233419.1; XM_004233371.3. DR UniGene; Les.15921; -. DR PaxDb; K4B6W9; -. DR EnsemblPlants; Solyc02g065350.2.1; Solyc02g065350.2.1; Solyc02g065350.2. DR GeneID; 101260398; -. DR Gramene; Solyc02g065350.2.1; Solyc02g065350.2.1; Solyc02g065350.2. DR KEGG; sly:101260398; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K4B6W9; -. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 331 AA; 38191 MW; CE363565261076B1 CRC64; MVNKFRRQIG KVSSISYTSQ PKFCKIIFSP HELCRLRIPK GFASRYCKNI LNPVYLEVPN GEVWEVELEH SEGHIWLAEG WKDFSDYYSI RRGNFFMFGY NARSHFNVTI FDFSAAEIEY PPAEIESDDS IDISDVVEYS SEYLSHDPLV KERKRIRQEG EEENDIPVER QTIVIDEEES QLNVVSLVIS EDCEEQQSNI VTSKRKEERD EGTADNYQRA KAFKSKNPFI VSFMHPSYVS KPHALYIPLK FARMYLMRNS GNLVLRVPGK GSWSVKCVML RKDAKVTCGW KAFVLDNKLK YGDVCVFEVI NDTKLSLIDV TIFPGISDGT N // ID K4B8Y1_SOLLC Unreviewed; 747 AA. AC K4B8Y1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g077560.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g077560.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g077560.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010315886.1; XM_010317584.2. DR UniGene; Les.12165; -. DR STRING; 4081.Solyc02g077560.2.1; -. DR PaxDb; K4B8Y1; -. DR EnsemblPlants; Solyc02g077560.2.1; Solyc02g077560.2.1; Solyc02g077560.2. DR GeneID; 778363; -. DR Gramene; Solyc02g077560.2.1; Solyc02g077560.2.1; Solyc02g077560.2. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; K4B8Y1; -. DR OMA; IVDYPFC; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 747 AA; 81463 MW; 19AE1526E481AA30 CRC64; MMCGLIDLNT VDNDDAGEET TAPVSLDSPA SSSAASGSSD LTSSTTPAVA SVCMELWHAC AGPLISLPKK GSAVVYLPQG HLEHLSEYPS IACNLPPHVF CRVVDVKLQA DAATDEVYAQ VSLVPDNQQI EQKWKDGDID ADIEEEEIEG AGKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFAPLD YRQQRPSQEL VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRTG DGELRLGVRR AAQAKTCSSY LAPCSKPLNV SGIVDAVNVI SSRNAFNICY NPRDSSSDFI VPYHKFSKTL AHPFSAGMRF KMRVETEDAA EQRFTGLVVG VSNVDPVRWP GSKWRCLLVR WDDLDVSRHN RVSPWEIEPS GSAPVPSSLV MPSAKRTRVG FPISKADFPI PREGIAVSDF GEPSRFQKVL QGQEILRMHA PYGGLDARSP RPAGTRCFPG FPSSGISRMG NSIRPLFGDT DKSHESIGFS ESLRFNKVLQ GQEIFTSPPY GRAQAGIQMQ EKSRTGIFVG IQVPNHGNRW PAPNQDNNTP CKPINPVSAS SPPSALNFQH PSPPASKFQA MFNHKHDLVN QASLDLSENC CRYPYLSSGS HTEDISQKEG TQGISSFGFL KEQKQTGLSY LSLGTQSSFK GNQNLVSTCK TGCRIFGFPL TESKISATRA DTPSEAVYSH GLETTFLPSS DGKLQPGPPL MTNVVGTNFT KVNDLYAARD VLLDIAL // ID K4B9C6_SOLLC Unreviewed; 1043 AA. AC K4B9C6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g079020.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g079020.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g079020.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g079020.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4B9C6; -. DR EnsemblPlants; Solyc02g079020.2.1; Solyc02g079020.2.1; Solyc02g079020.2. DR Gramene; Solyc02g079020.2.1; Solyc02g079020.2.1; Solyc02g079020.2. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K4B9C6; -. DR OMA; CASAYEQ; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 575 625 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1043 AA; 114546 MW; 3772E6024F580C28 CRC64; MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS FILPERIKDV NNWNPIAGSG PVPWRQAPSL FNGSTNQNEL QHKAPFPEAT VSIDRLSLGE RPFALLSDNN RKDSCEKLMN GKLKIGVPGT PEDGYAGSNR DEAHKSCLSA PWQSSYANSE LSAPSFCLTV GSASKNEPTV HSKVSVSVPQ KTTLSIPLPL GKQLGGHATV DSAGETQVKS SKIRGDGRGK NQLLPRYWPR ITDQELRRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKM QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRIEP EGKLVMGCRK ASNILTADQG SEACSNGNGV ATNGNASTKH TKSSEEVLAN STKKGSSSTT LVAATSARAE IKMSDDLVNE SLGTNRPIRC KRKGSTMGSK RKRMRIDNDN LVELKVTVVQ AQGLMRPPSS GAPTVIVIEG CEFEEYEQED APIIGRPTIP HMDQLGEKIQ WVQCEDCFKW RKVPDNVDLP SRWTCSDNSC DPERSVCSAV QELTADHLRD LLPHINKASK KRKASKQEMD LVETLDGLDA LAHLAILEEG ETLPASPQAT TKHPRHRPGC TCIVCIQPPS GKGPKHKQSC DCNVCKSVKR RFKTLMMKRE KKLSEKEAEA TCQKLQPQSA GQLLDADDIQ EPIDDAVHSS PQHEELNIEG SVDPNYLNEK KSSVEDPNYL DEKKSSVDDT NYLSEKISSV DDPSYLNEKE SSVDDPNILN EKKSSVDDPN CLNEKKSAVD DPNYVDERKS SVDDPNCLKE KKSSASPFKG EFDLNAKPDR DDELSPGSDS GSMMRMIKRA AEQYVRHCDN GSSVGNQRDG DGAGETNPGN CVIVSGSHQA DVDHNRPLPI SAAASLAPND QLHFAMAASM SETHKFWESN GDLNLEIVLE EQPLVTERRV LSIVYMVVSL LDLIWDSKLV GLD // ID K4BA48_SOLLC Unreviewed; 293 AA. AC K4BA48; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g081780.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g081780.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g081780.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g081780.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4BA48; -. DR EnsemblPlants; Solyc02g081780.1.1; Solyc02g081780.1.1; Solyc02g081780.1. DR Gramene; Solyc02g081780.1.1; Solyc02g081780.1.1; Solyc02g081780.1. DR InParanoid; K4BA48; -. DR OMA; FVVHHQL; -. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33860 MW; 67086B5726C9AFEC CRC64; MLMDSDNTPA FCKLLQFGEV FISKMMPSCF IKENKKMLTK ACLLKTDEAG MLWEAKIVRE KSNNYFICEG EWPQFVVHHQ LKQGDVLLFF LVEKSVFHVH PYTRKCRRNI RDEKKKLFYQ QLSSTSSSSS SEEVEIGPDR KVNSTDEESV DEDDSPCYKN PKQENLSDDG GGGNGSKKFR GGSSMMNFKT DHPYYEMVVK RSHKTFMTIP KRFAKMTGIF SMKNMKVVNE EKKGYWRVEI VDMSGTIRIT KGWAAFRTYN KIVCGDSCRF KLIKPNTLQV QKVPKHASLK SYH // ID K4BCG8_SOLLC Unreviewed; 366 AA. AC K4BCG8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g090170.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g090170.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g090170.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g090170.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004233644.1; XM_004233596.3. DR PaxDb; K4BCG8; -. DR EnsemblPlants; Solyc02g090170.2.1; Solyc02g090170.2.1; Solyc02g090170.2. DR GeneID; 101257140; -. DR Gramene; Solyc02g090170.2.1; Solyc02g090170.2.1; Solyc02g090170.2. DR KEGG; sly:101257140; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; K4BCG8; -. DR OMA; FKIMIND; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 258 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 258 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 43045 MW; 27DE4976AB271C04 CRC64; MATICERCKV LEKQKYWEEF DKQHKFFKIM INDFRRRLRI PQKFVTCFKN SHKLLGQKIL TGPSGNTWLV EVIRTEKDYV FCNGWEVFVK DHSLEIADML VFKMDGFSAF DVMIFDASAC EKETTFFVKK NRNPCKHPDE VTDEHTTEQQ SSEDEPSNDD DVTDEDDNIQ EPTRGRKSSR GKQYQFQSLQ SSKGKKMKKI LVAKQDNRRR KCTPMSSRKK NVEPEEKRPM YSNRRRVSEK EKMRVHQLAS RHTSSVPSLL MTMQPTHVYM GQLKLPKEWA QKNMRKISET ITLRIPSSRR TWSASIRCRM EGLVIQSGWD DFAMDNDLEE FDICVFELAQ GGKHDSKPVI LDVYIYPVEN EIMRPL // ID K4BCM0_SOLLC Unreviewed; 526 AA. AC K4BCM0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g090710.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g090710.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g090710.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g090710.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004232039.1; XM_004231991.3. DR UniGene; Les.12490; -. DR PaxDb; K4BCM0; -. DR EnsemblPlants; Solyc02g090710.2.1; Solyc02g090710.2.1; Solyc02g090710.2. DR GeneID; 101245902; -. DR Gramene; Solyc02g090710.2.1; Solyc02g090710.2.1; Solyc02g090710.2. DR KEGG; sly:101245902; -. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR InParanoid; K4BCM0; -. DR OMA; FWMGLPV; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 167 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 469 510 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 526 AA; 59424 MW; 8E714FA2FE2A217D CRC64; MKIKVVHRSE PPNQERVSIP YPDMPKKEVF DEEQENQQLG TQEPEPEPDF AIPKMGDDNL SLVDASIPIN SITPSTQTPI SSLLGKRRRK PKEMVDQIST IPFRKKRVFK KQSQSSNGVA VAGCRSISTK LERATADGSG SATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF WMGLPVPFCK NHLPRKDTPV ILESETGEEF EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL VFQLVEPTRF KVYVIRANDL KEVDGALSLL NLDAPAKQSD AEGAIGNNIK KRQKKSLPLT VVQKRRRKED LSKQLVPLEA QSGNDSDEVA SEILEGSRSS GLAVNFRDIK SLEEFQILVN GVCIDSELPE HIRRKYYELC CSKNAFLHDR LLQGLHCKLV AGMIFEVVNI ADMVRACKLS TPRKEFDKWE KSLKSFELLG MNVGFLRTRL RWLLSLAFDS EGASDTKRYW DAKKEWSRAE DEIRNLEMKL EELKQASGKY VADVEALKSK AESYELMFQG EVNAPW // ID K4BDP1_SOLLC Unreviewed; 274 AA. AC K4BDP1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g094460.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g094460.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc02g094460.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g094460.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc02g094460.1.1; -. DR PaxDb; K4BDP1; -. DR EnsemblPlants; Solyc02g094460.1.1; Solyc02g094460.1.1; Solyc02g094460.1. DR Gramene; Solyc02g094460.1.1; Solyc02g094460.1.1; Solyc02g094460.1. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; K4BDP1; -. DR OMA; VHRKKRM; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000004994; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010373; P:negative regulation of gibberellin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0010116; P:positive regulation of abscisic acid biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0008284; P:positive regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0010262; P:somatic embryogenesis; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 176 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 74 176 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31325 MW; 8CE500A384111917 CRC64; MEITEAYGVM ADGNNNNSNS MMNPPTPTKR SRSQRRRRSS LNFTSLDFLS HVPPPLPPLP PARVLEPTGF RFLFDKQLQN SDVSSLRRIV VPKKAAERYL PALEIKEGFP ITMDDMDGIH VWSFRYRYWP NNSSRMYVLE NTGDFVQTHE LRQGDYFALH YNDQKQIYGI EARKAGSGAV FRGYEAEDVI LTDYAQAADD GNGALMNEAE MDMSSFYFPA MDNEMGMSFI YDTSFWNEPA FDFVGGPMTY YSTNVYPMPS FGSIEDSFSV DDFY // ID K4BED7_SOLLC Unreviewed; 468 AA. AC K4BED7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g007140.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g007140.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g007140.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g007140.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004234163.1; XM_004234115.3. DR UniGene; Les.5406; -. DR PaxDb; K4BED7; -. DR EnsemblPlants; Solyc03g007140.2.1; Solyc03g007140.2.1; Solyc03g007140.2. DR GeneID; 101247292; -. DR Gramene; Solyc03g007140.2.1; Solyc03g007140.2.1; Solyc03g007140.2. DR KEGG; sly:101247292; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; K4BED7; -. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 362 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 362 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 468 AA; 52264 MW; 859B54B1E0DC19AF CRC64; MVHHNEACEM CTRTCMLIHG QRDPSPIVNS FFKVMIDKLF SKILYFPPRF ARLVSHLTDQ ETYLEDSSGQ QWRVGICNHN GSLAIRQGWR TFSSEHGLKV GDFLVFHYIQ GQHFVVQIYG TSGCQKINSY NGTHLGKKRP RTNSTETSHD ELSPETDINL RKKWNSTPSV TAIPESERAG HQPVTTTFAS NIDAETGEQQ IVPQEEGTSD VLQGENRPHN HTDIISQRES SSVDVVPLEM ELLTLKAPFL DVKITQTEKI SGPVNDISLL GQTDENDHHV GLISSTSLIS AENGTSAKET RVDKLELKEM EANTRCPSKN LNGKEPKITE KDGQVYPDAV IGNNMVIKSE PADSGDTSFP DAGNFSCSLR VDGRNFLELP QSWPQVIVGR RKMGKIIIYL KGPDNRCWPI IYHENFGSKI LAGNWALFAA VYGLKPGDEC LFQLSNQSKR MFTVHVAHKV DVTQTTLS // ID K4BFG8_SOLLC Unreviewed; 844 AA. AC K4BFG8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g031970.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g031970.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g031970.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc03g031970.2.1; -. DR PaxDb; K4BFG8; -. DR EnsemblPlants; Solyc03g031970.2.1; Solyc03g031970.2.1; Solyc03g031970.2. DR Gramene; Solyc03g031970.2.1; Solyc03g031970.2.1; Solyc03g031970.2. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; K4BFG8; -. DR OMA; ESHHIVS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 717 801 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 844 AA; 94446 MW; 788FFC7C59B82A2D CRC64; MKLSTSGMGQ QAHEGENKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE VDIHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTLQEQKDT YLPVELGIPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPCQELIAR DLHDIEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LFLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAASTN SCFIVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWYPG TSSFQENNSE AINGMTWLRG ESSEQGPHLL NLQSFGGMFP WMQQRVDPTM LRNDLNQQYQ AMLASGLQNF GSGDLMKQQL MQFPQPVQYV QHAGSVNPQL QQQQQQQETM QQTIHHHMLP AQTQDNLQRQ QQQHVSNQTE EQSHQHSYQD AYQIPNSQLQ QKQPSNVPSP SFSKPDIADP SSKFSASIAP SGMPTALGSL CSEGTTNFLN FNIIGQQPVI MEQQQQQKSW MAKFANSQLN MGSSSPSLSG YGKETSNSQE TCSLDAQNQS LFGANVDSSG LLLPTTVSNV ATTSIDADIS SMPLGTSGFP NPLYSYVQDS TDLLHNVGQA DAQTVPRTFV KVYKSASLGR SLDITRFNSY HELRQELGQM FGIEGFLENP QRSGWQLVFV DRENDVLLLG DDPWEEFVNN VWYIKILSPE DVQKLGKEEV GSLNRGPPER MSSNNSADGR DFMSGLPSIG SLDY // ID K4BFX1_SOLLC Unreviewed; 203 AA. AC K4BFX1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g042500.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g042500.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g042500.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g042500.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4BFX1; -. DR EnsemblPlants; Solyc03g042500.1.1; Solyc03g042500.1.1; Solyc03g042500.1. DR Gramene; Solyc03g042500.1.1; Solyc03g042500.1.1; Solyc03g042500.1. DR InParanoid; K4BFX1; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 88 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 88 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 203 AA; 23352 MW; 9DCD7EE230850F21 CRC64; MRHLGARPIL RILVVFSKRH CENKFNPVFL EFPHGKAWEV EVDNSQGQIW LAKGWSDFCD YYSISVKSLL MFTYNPRSHF VVAIYDQSTT EIEYPIDQDI ESDEQEEDIL VSQGNANVID EDILILQSNA YVIEEDIPIF QSNANVIKDE KEDIPVNCPQ TNANVFEQHK EVGEANNICE KVVPNNYSSQ YILVDLTGDN PFF // ID K4BFX2_SOLLC Unreviewed; 193 AA. AC K4BFX2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g042510.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g042510.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g042510.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g042510.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Solyc03g042510.1.1; Solyc03g042510.1.1; Solyc03g042510.1. DR Gramene; Solyc03g042510.1.1; Solyc03g042510.1.1; Solyc03g042510.1. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 22225 MW; CAE7102F7C726A8C CRC64; MANEFHGSSL RSSSPNNPKF IQILTSLDEL RRLRIPVVFA KRHCENMLNP VFLEAPHGKA WEVEVENSQG QIWLAKGWSD FCDYYSIRVK SVLMFTYNPR CQFSVAIYDQ SKTEIEYPID QDIESDEQEE DILFSQANAN IIEEDILILQ SNANVIEEDI PILQSNANVI EDEEEHIPVN CPQTNANVIE QHK // ID K4BFX9_SOLLC Unreviewed; 323 AA. AC K4BFX9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g043580.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g043580.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g043580.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g043580.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004234708.1; XM_004234660.3. DR PaxDb; K4BFX9; -. DR EnsemblPlants; Solyc03g043580.1.1; Solyc03g043580.1.1; Solyc03g043580.1. DR GeneID; 101262388; -. DR Gramene; Solyc03g043580.1.1; Solyc03g043580.1.1; Solyc03g043580.1. DR KEGG; sly:101262388; -. DR InParanoid; K4BFX9; -. DR OMA; RSMVIIK; -. DR OrthoDB; EOG093615IH; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 223 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 223 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 36852 MW; BA9E34AE940B1FD1 CRC64; MANEFHGSSL RSSSPNNPKF IQIITSLDEL RRLRIPVVFA KRHCENMLNP VFLEAPHGKS WEVEVENSQG QIWLAKGWSD FCDYYSISVK SVLMFTYNPR CHFSVAIYDQ SKTEIEYPID KDIESDEQEE DILFAQANAN IIEEDILILQ SNANVIEEDI PILQSNANVI EDEEEHIPVN CPQTNANVIE QHKEVGEANS ISEKVGPNNY SSRYSLVDLT GDNPFFEMVI KKSHATCMAI PLRFAQQTDI INMKNMRLVN EEGVEWKVEI EYARSMVIIK QGWTAFRKDN KIANGETCLF KLIQGPIANV LQVQKIPTPL CLQ // ID K4BG31_SOLLC Unreviewed; 323 AA. AC K4BG31; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g044110.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g044110.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g044110.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g044110.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004234716.1; XM_004234668.2. DR PaxDb; K4BG31; -. DR EnsemblPlants; Solyc03g044110.1.1; Solyc03g044110.1.1; Solyc03g044110.1. DR GeneID; 101266308; -. DR Gramene; Solyc03g044110.1.1; Solyc03g044110.1.1; Solyc03g044110.1. DR KEGG; sly:101266308; -. DR InParanoid; K4BG31; -. DR OMA; GRIWQVE; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 223 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 223 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 36880 MW; 5ECF765587107C7F CRC64; MANEFHGSSL RSSSPNNPKF IQIITSLDEL HCLRIPVVFA QRHCENMLNP VFLEAPHGKP WEVEVENSQG QIWLAKGWSE FCDYYSIRVK SILIFTYNPR CHFVVAIYDQ SKTEIEYPID QDIESDEQEE DVLVAQANAN VIDEDILILQ SNANVIEEDI PILQSNANVI EDEEEDIPVN SPQTNANVID QHKEVGEANS ISEKVGPNNY SSRYSLVDLT GDNPFFEMVI KKSHATRMAI PLRFAQQTDI INMKNMRLVN EEGVEWKVKI EYTRSTVIIK KGWTAFRKDN KIANGETCRF RLIRGPIANV LQVQKISTPL CLQ // ID K4BI87_SOLLC Unreviewed; 335 AA. AC K4BI87; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g083110.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g083110.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g083110.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g083110.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010318116.1; XM_010319814.1. DR PaxDb; K4BI87; -. DR EnsemblPlants; Solyc03g083110.1.1; Solyc03g083110.1.1; Solyc03g083110.1. DR GeneID; 104646413; -. DR Gramene; Solyc03g083110.1.1; Solyc03g083110.1.1; Solyc03g083110.1. DR KEGG; sly:104646413; -. DR eggNOG; ENOG410IWEF; Eukaryota. DR eggNOG; ENOG410YI8X; LUCA. DR InParanoid; K4BI87; -. DR KO; K09287; -. DR OMA; NEHTTED; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 104 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 104 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 335 AA; 38721 MW; 5CE07FFBA28567BC CRC64; MEDETNLISS TTNVTVGDCD SSGSNHLLPK KRNINNAREG KCCISGSKFK GVVGQNNGHW GAQIYANHQR IWLGTFKTET DAAMAYDSAA IRLLGPDHSH RNLSWTNSTI QEPNFQTQFS TEDILRMIKE GSYTSRFDEY LKDKFEDHFQ SLKNLQKVNE GNAEFSYKQL FQKELTPSDV GKLNRLVIPK KYATKYFPQI QDEEMIFYDT SRRLWKFRYC YWKSSQSFVF TKGWNKFVKD KGLRAKDTIV FNLCEFKNGT KENCNAFVID VVKSIDGVPM NLALNHHEQE ETIDDHEVDT QEFTKAQPFD DDLVPVWLFG KQIGWMETKG AMEFN // ID K4BK04_SOLLC Unreviewed; 343 AA. AC K4BK04; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g111410.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g111410.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g111410.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g111410.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010319048.1; XM_010320746.2. DR PaxDb; K4BK04; -. DR EnsemblPlants; Solyc03g111410.2.1; Solyc03g111410.2.1; Solyc03g111410.2. DR GeneID; 101259526; -. DR Gramene; Solyc03g111410.2.1; Solyc03g111410.2.1; Solyc03g111410.2. DR InParanoid; K4BK04; -. DR OrthoDB; EOG09361G0I; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 343 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 343 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 343 AA; 38855 MW; B1538542A55E012B CRC64; MESANVACDK CKKDCLLIHR KRVPSFYKAM TDKSCFQVLI VPPNFARSAS HLVDKVTLVK DASGLRWPVT VCDYQGLLAI QQGWPEFASK HDLVVGDHLV FHYTQRQHFT VQIFDMNGYE KIIFCCDTDK GEKRAATRVE ETTRAGDAQF DQDGRLCLHQ SRFEMPASKP PAEGLLPLRE DGIKATGMVS RPAEDILLLG PKDKKCKKAS QFDSGEEEAN GNGKVNKSES AGLGDTPSFP ANNYSSLVEI YGPDFLELPG SWRDLLQRPT RERWIIFLRG PDKRIWPTYY TSLLPPYYSR RPSVDVLSRG WKEVAAAYGM NAKDHCLFEL ADKQNRIFDI RKI // ID K4BK13_SOLLC Unreviewed; 501 AA. AC K4BK13; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g111500.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc03g111500.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc03g111500.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc03g111500.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010319046.1; XM_010320744.2. DR RefSeq; XP_010319047.1; XM_010320745.1. DR PaxDb; K4BK13; -. DR EnsemblPlants; Solyc03g111500.2.1; Solyc03g111500.2.1; Solyc03g111500.2. DR GeneID; 101262505; -. DR Gramene; Solyc03g111500.2.1; Solyc03g111500.2.1; Solyc03g111500.2. DR KEGG; sly:101262505; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; K4BK13; -. DR OMA; MECENEA; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 442 501 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 442 501 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 501 AA; 55915 MW; 38000CEE6392C874 CRC64; MECENEACGG CKKDCMLIHG KGVLSFFKVM IDKSFLQVLF FPPKFARSVP HLTDQETYLE DSSGHRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE KKSCSDIGNG RKRARTYLEA TAQAELFQTT DINSVKKKSK TSAESESETV THKTNTANFK TSAESESEKV RYKANAANFK TSAESESEKV TYKPSTANFT TNINADIGKG QSVHSAIDVD ESCCVIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTVGTSS PFKGDIGKDN QVEANFRSQT ESNLNVEIDN LNSKAPWSKL EAGIRATNMV SSPAKDIPLR YPKYKKSNEA SQFAREAMLV KKEFEEITTE AFSPARAIHG GEYANGNEKV IKSEPADSGD ARSLNAGSYS CLVEIDGRDF LELPESWRKY LPQKAKLGRM IIYLRGQDKR IWPTLYNSRS GFNVLTCGWK QVTATYGLNP GDECLFQLVN QRGCIFDIRK I // ID K4BQ52_SOLLC Unreviewed; 217 AA. AC K4BQ52; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g015500.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc04g015500.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc04g015500.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g015500.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4BQ52; -. DR EnsemblPlants; Solyc04g015500.2.1; Solyc04g015500.2.1; Solyc04g015500.2. DR Gramene; Solyc04g015500.2.1; Solyc04g015500.2.1; Solyc04g015500.2. DR InParanoid; K4BQ52; -. DR OMA; NSSGMVW; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000004994; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 24593 MW; BF29437A57EBD2D6 CRC64; MVDRREDHLA ETAARREKQP AGMASRQGQG EPRPVDIPER TPHFFKIILS PHASKLHIPD EFVTEHGANL GDIVLLEVPN GVVWKVRLLN SSGMVWLNEG WNKFKEYYSI GCGYFLLFRY KGNSQFCVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVRL EENGINLPPP GEPPKEKRIN LTPPNDPPEE DVIYLPPPGI YTMEELSLIS MPSRPKV // ID K4BT74_SOLLC Unreviewed; 255 AA. AC K4BT74; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g064830.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc04g064830.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc04g064830.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g064830.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004237741.1; XM_004237693.3. DR STRING; 4081.Solyc04g064830.2.1; -. DR PaxDb; K4BT74; -. DR EnsemblPlants; Solyc04g064830.2.1; Solyc04g064830.2.1; Solyc04g064830.2. DR GeneID; 101264418; -. DR Gramene; Solyc04g064830.2.1; Solyc04g064830.2.1; Solyc04g064830.2. DR KEGG; sly:101264418; -. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; K4BT74; -. DR OMA; WNVEINR; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 255 AA; 28846 MW; 55B9882F3C1B760E CRC64; MQSSSPELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDN LEKGTIIKGK DIWNVEINRS EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGDMRFSVTL LDSTGCDKKL LEKSEVVPSQ EKKKKVKSAQ PGIEKRKVEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCLFQLDR SKSDSNSIAI DVRVL // ID K4BUZ7_SOLLC Unreviewed; 267 AA. AC K4BUZ7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g079130.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc04g079130.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc04g079130.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g079130.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4BUZ7; -. DR EnsemblPlants; Solyc04g079130.2.1; Solyc04g079130.2.1; Solyc04g079130.2. DR Gramene; Solyc04g079130.2.1; Solyc04g079130.2.1; Solyc04g079130.2. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; K4BUZ7; -. DR OMA; HYERVMI; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000004994; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30691 MW; 1028260AFA960B4C CRC64; MVKYEDLRKQ RLEENKKRME ELNLPLLTQA LKNSTSPKTT PMKRTKPRVV GTELVAVRRS PRVAKSPAPE YKEVIHYERV MIPRRLATPT KRDRLFFAYA SDEERAASIE KAEKLEASLG SDYPILVRPM LPSHVSGGFW LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKFGL SGGWKRFSVD HDLADGDTIV FHLIRPTKFK VYIIRVNNAS ETVSTQTSTS TSSSEEKRML LPRVVCFSVS YFVEQHVFSR SKQQRRG // ID K4BV42_SOLLC Unreviewed; 580 AA. AC K4BV42; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g079590.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc04g079590.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc04g079590.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g079590.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_019069240.1; XM_019213695.1. DR PaxDb; K4BV42; -. DR EnsemblPlants; Solyc04g079590.2.1; Solyc04g079590.2.1; Solyc04g079590.2. DR GeneID; 101267401; -. DR Gramene; Solyc04g079590.2.1; Solyc04g079590.2.1; Solyc04g079590.2. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR InParanoid; K4BV42; -. DR OMA; FTGRKFR; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000004994; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 461 557 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 461 557 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 580 AA; 64256 MW; 59640DCA6D7C6A0A CRC64; MLDARRPHFL VGFNPFMNSE KLKIPSKFIK HMEGGDSGTT VLVGPSGNAW PVDLIQQDDG LFFNNGWVSF VKDHCLETGD SLVFRYDGDL HFTVQVFDES SCEKEASYNA DCSQGATDLY NLALKKRDRG NSVLLDCMVE GVPKKMKSTE IPSECTSSQD THGLASSKDG YTPEDAVCSY AGRNYAASFL DEMENAGDAL NSKVTIAVPA QAKIIFSNPG NASSEKDMWL PAQEAEKVAG LFTSSLPSFT KVMKRFNISG SYTLHIPYQF ATEHLPNCKV KILLHNLEGK TWTVNSIPTT RVQTSHTFCG GWLSFVRDNN IDLGDTCIFE LVRKCELRVR VLKAEKEGSD YSSKVVDEGL VIDYAKNSGC KSRKVGSSSD QAKVMTYDKK GSTPEKEKHG DMLKNHQLHS QSKISSGDSA IRKPTSSQDK QGSFTKSCMS MKSVPEEKLA AESFISNFPH FVRIMKKFNI SGSYTLKVPC RFSMEHLPNC RTEIVLQNLK GECWTVNSIP TVKVQTLHTF CGGWSAFVRE NDIQMGDICI FELIGKYEMR VHVCAIGKKG LDYQNGTAPK ESDILASLTS // ID K4BVK3_SOLLC Unreviewed; 930 AA. AC K4BVK3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc04g081240.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc04g081240.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g081240.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR SMR; K4BVK3; -. DR STRING; 4081.Solyc04g081240.2.1; -. DR PaxDb; K4BVK3; -. DR EnsemblPlants; Solyc04g081240.2.1; Solyc04g081240.2.1; Solyc04g081240.2. DR Gramene; Solyc04g081240.2.1; Solyc04g081240.2.1; Solyc04g081240.2. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; K4BVK3; -. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000004994; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 817 901 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 930 AA; 103037 MW; 55D6AEB6F899E2F2 CRC64; MGSVEEKNKP GSLVSGAHTL LEEMKLLKEM QDHTGGGRKL ISSELWHACA GPLVTLPQVG SLVYYFPQGH SEQVAVSTNR TATSQIPNYP NLASQLLCQV HNVTLHADKE TDEIYAQMSL QPVNSEKDVF PIPDFGLKPN KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSM QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ LLLGVRRANR QQTSLPSSVL SADSMHIGVL AAAAHAAANR STFTIFYNPR ACPSEFVIPL AKYRKSIYNT QLSVGMRFGM MFETEESGKR RYMGTISGIS DLDPLRWPSS KWRCLQVEWD EPGCGDKQNR VSPWEVETPE SLFIFPSLTA GLKRPYQSTF LGAQTEWDSL MQHRPFMRVP ENVYGDLQSS SISNLWSEQL MKMLIRPPPG LTGLQCGVPT VQDIKVALPQ EARNVVQPAG NQKPELITVE ATPAQSETNS EVVLNQPVGV VNSISSQQAT LQAKSKPPEK VETDIIGKNS EPRKETSNSS VKLDQFQCNE DKVAIKPASP HDLPTDASVT ASHHNSFSQL QASPWLIPHN PQIDSAASNN ILQCPTNNEW NMSSLQSAAG LLKYPVSTST LTKHDNSFML PDTIGHGLAP IGQDLWDHQL NDVKCFSQTN LQVPLDITNM QFLPDSYGFK DLSEESHNQS DIYSCLNFDS NSGSTVIDNS VSSTVLDEFC NLKHTDFQNP SDFLLGNISS SQDVQSQITS ASLADSQNFS VQEFADNSGG ASSSNVNFDE CNLLQNSSWQ QVAPRVRTYT KIQKTGSVGR SIDVSGFKNY EELRSEIERM FGLEGLLNDT RGSSWKLVYV DFENDVLLVG DDPWEEFVGC VRCIRILSPT EVQQMGEEGM QLLNSAGLQS INGSTSEFPN // ID K4BXF3_SOLLC Unreviewed; 395 AA. AC K4BXF3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g009790.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc05g009790.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc05g009790.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc05g009790.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; NP_001307390.1; NM_001320461.1. DR UniGene; Les.20924; -. DR PaxDb; K4BXF3; -. DR EnsemblPlants; Solyc05g009790.1.1; Solyc05g009790.1.1; Solyc05g009790.1. DR GeneID; 101264719; -. DR Gramene; Solyc05g009790.1.1; Solyc05g009790.1.1; Solyc05g009790.1. DR KEGG; sly:101264719; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; K4BXF3; -. DR KO; K09287; -. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000004994; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 127 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 207 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 127 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 207 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 395 AA; 44382 MW; C00112DE29226F80 CRC64; MEGSISSIDQ ESTTSDSLSI APAASSSTMI KSSTTIKLPP ESGLCRMGSG TSVIIDAENG VEAESRKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEENEAARAY DIAAQRFRGR DAVTNFKPLL ENQESDDMEI AFLNSHSKAE IVDMLRKHTY IDELEQSKRL FGFTKDGMIK RKDGLVISSF FGSTNDKVNC KAREQLFEKV VTPSDVGKLN RLVIPKQHAE KHFPLQNGNN SKGVLLNFED LNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFQRSTSGDK QLYIDFKAKN VGNTSMVVTN QVQAQVQVPL VQMVRLFGVN ICKVPANVSN VVIDNNNNNN NNNMTSWGGG KRRMEMELLT FESCRKKQRV IIDAL // ID K4BZ34_SOLLC Unreviewed; 174 AA. AC K4BZ34; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g017740.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc05g017740.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc05g017740.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc05g017740.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4BZ34; -. DR EnsemblPlants; Solyc05g017740.1.1; Solyc05g017740.1.1; Solyc05g017740.1. DR Gramene; Solyc05g017740.1.1; Solyc05g017740.1.1; Solyc05g017740.1. DR InParanoid; K4BZ34; -. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000004994; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 174 AA; 20314 MW; 39D3974E96C53B64 CRC64; MLMDTDQPPS FCKIILSRET VMNKMQLPSC FVKDNKKILS KNCLLKTSEA GMSWEAKIAR KKPNYFICEK DWPQFVLHHQ VEPRDILIFS LIEKSTLHVR PYTPKNCRNI TRKRQLSYEE LSSSSSSEEE IGPSKRVKKM EPIIVVSDTE EEYVDMSFSD DDEDDPPYSH RATY // ID K4C091_SOLLC Unreviewed; 227 AA. AC K4C091; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g041100.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc05g041100.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc05g041100.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc05g041100.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4C091; -. DR EnsemblPlants; Solyc05g041100.1.1; Solyc05g041100.1.1; Solyc05g041100.1. DR Gramene; Solyc05g041100.1.1; Solyc05g041100.1.1; Solyc05g041100.1. DR InParanoid; K4C091; -. DR OMA; AFEFDCY; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000004994; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 26522 MW; 8DFBFB19FE632343 CRC64; MGFFKKLPTT YTDYVDGILP SNIILRDRFG NMWPIGVTKE AKDIYFEYGW EKFIKDNIVE LGDFFIFDFD GTRIFDFTLL GRNGCVKKGV GSLKINVKEE EVEEMNVEHQ NSVESKENTR ARDSKNISSF DITDENTLVE EKEDEQKEYE NREDVPEEEG EKEEPDEYKE DEDDKERTGI LKKNDNTFQR RQFATNIFRS GGGTKPKKCF LRDKNTPRKE KSSVRSG // ID K4C0Y0_SOLLC Unreviewed; 1097 AA. AC K4C0Y0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc05g047460.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc05g047460.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc05g047460.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010321285.1; XM_010322983.2. DR UniGene; Les.25610; -. DR STRING; 4081.Solyc05g047460.2.1; -. DR PaxDb; K4C0Y0; -. DR EnsemblPlants; Solyc05g047460.2.1; Solyc05g047460.2.1; Solyc05g047460.2. DR GeneID; 100736463; -. DR Gramene; Solyc05g047460.2.1; Solyc05g047460.2.1; Solyc05g047460.2. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; K4C0Y0; -. DR OMA; TGARDEM; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000004994; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 985 1069 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1097 AA; 120897 MW; AA4BE355D7F62D89 CRC64; MKTPGNGAGG GNVNPAEGEK KNLNPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI KKDVEAQIPN YPNLPAKLIC LLHNVTLHAD PETDEVYAQM TLQPVPSFDK EALLRSDLSM KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW TFRHVYRGQP KRHLLTTGWS LVVSGKRLFA GDSVLFIRDE KHQFLLGIRK ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM PWLGDDFGMA DPQGLPGLSL IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQQMQHNLQF NNAHRPNQQL DQLQKLPAAA LNSLDSIMQS QQQLSDVSQQ PRQNLTTQSL PTTQVHTQHI QAQSLGQSQN VLPPQQSVQN QNQLQRNLPQ SLSQQHPQQQ ILGQTQQQSF MSSQAPDPVN QQQHFSDNQA QLQMLQKLHQ QQKSLLAQQS GLQQPSQLGS IQDHQKQLMD ASQNFSRSLA TNQMLDASQT TSTSLPHSQV VQQQMTRINS PSNLRFSQPT QQPKLQQQQS GNLSDLSGPV NYPLPRTSYQ LSANGSNLTG TAGGGQSVVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA RDEMTHCSGP LEVMSANNNL QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS SSATSACLSQ NDVQLQQTAT DPLSGSSQPL IFRDSPDGGE VQGDPRNNVA FGAANMENNQ LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASDYVTFNSI DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI DIARYSGYEE LKLDLARRFG IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVSCVR CIKILSPQEV QQMSLDGDFG GSVLQNQDCS SSDAGDV // ID K4C2S9_SOLLC Unreviewed; 650 AA. AC K4C2S9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc05g056040.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc05g056040.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc05g056040.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; NP_001303697.1; NM_001316768.1. DR UniGene; Les.23567; -. DR PaxDb; K4C2S9; -. DR EnsemblPlants; Solyc05g056040.2.1; Solyc05g056040.2.1; Solyc05g056040.2. DR GeneID; 100750255; -. DR Gramene; Solyc05g056040.2.1; Solyc05g056040.2.1; Solyc05g056040.2. DR KEGG; sly:100750255; -. DR InParanoid; K4C2S9; -. DR OMA; ENNEGSI; -. DR OrthoDB; EOG0936128W; -. DR Proteomes; UP000004994; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 650 AA; 74232 MW; B872E43BD3C4B721 CRC64; MVDQLRFSQQ KYLNHMPFKG DDDLCREIWK ACSGSLLDVS KAGERVYYFP RLHVEQLEQS SNQELIEKLQ LSNLPPKILC RVLHIRLLVE HETEEVYAET ILIPNQDQNE PTAADFSPLD NPRPQFQSFC KCLTQSDIKS NWGLSVPLKD AVKCFPPLDM RQEKPCQELI AKDLKGNEWR FKHAHQGQPR RHSLTNGWST FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQHCSVGAS TFSRQSMEVV LAVASHAFAT KSLFFVYQKP CYNKSSQFIM SMSKYFEGGN HGIGVGMISR MQIESEDYCH VRRTNDLEQI SLSQSQQTTN FMLEEDQYMQ DSEAVLDCAQ STMIDLEIRQ QTIGSLNNIH CFAPVEDNGL QLHAAVAREN NEGSIPKDTV STHTRDEDLY ELFKDFDFPD STNTSLDTIA LDLGSDWFRS TLQEQEETVT PSQPNASEDH SRRTSSVLEH PNSFRVMSIS SNPSQIPYEG PGRGDEQVPW GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE ILAELVYFLD NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFSMESLLQ RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNSPM RLQSVLEGLL // ID K4C3D4_SOLLC Unreviewed; 293 AA. AC K4C3D4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g007530.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g007530.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g007530.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g007530.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004240433.1; XM_004240385.3. DR RefSeq; XP_019069951.1; XM_019214406.1. DR UniGene; Les.5455; -. DR PaxDb; K4C3D4; -. DR EnsemblPlants; Solyc06g007530.2.1; Solyc06g007530.2.1; Solyc06g007530.2. DR GeneID; 101249925; -. DR Gramene; Solyc06g007530.2.1; Solyc06g007530.2.1; Solyc06g007530.2. DR KEGG; sly:101249925; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR InParanoid; K4C3D4; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33722 MW; 1CD66711109DE58E CRC64; MANDKTNSYE ELRRQRVLDN KKRFEDLGIL NISKNLSDIT KSEKKSDYKT ELRRVRQKAK DVYLSEPRRS ARARNPVPTY RDEIDIELPS LRKRSKFSSS WASYLARPLE EVKVASYEEK VLALKCAEKL QSNLQSDKPF FIKTMVRSHV YSCFWLGLPT RFCQDHLPKS TVDVLLVDEE GLEYEALFIG KRTGLSGGWR AFALDHKLDD GDALVFELVE PTKFKVYIVR ASQCSSEVDK SEAEKEESEA EETPKSETKK KKKSSNKPEV PTIAKEEVSV VVTSATRRST RRK // ID K4C4N8_SOLLC Unreviewed; 445 AA. AC K4C4N8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g034140.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g034140.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g034140.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g034140.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004240808.1; XM_004240760.3. DR PaxDb; K4C4N8; -. DR EnsemblPlants; Solyc06g034140.1.1; Solyc06g034140.1.1; Solyc06g034140.1. DR GeneID; 101248980; -. DR Gramene; Solyc06g034140.1.1; Solyc06g034140.1.1; Solyc06g034140.1. DR KEGG; sly:101248980; -. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR InParanoid; K4C4N8; -. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 381 436 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 445 AA; 49929 MW; A53AAF9CA498D027 CRC64; MAISSLYSSK KSPALSSSKK KAQQIKKKTL APTKTNKVVN GGTKKVQICL EKKTLKHSSV DVNSSAMLRA AEVQANLPCQ FPSFVKYMLP SHVSGGFWLG FPKRFCDCHL PKHDAIVVLV DENDEESPTK YLIDKNGLSG GWRGFSIAHN LLEGDVLVFQ LIQPSKFKVY IVRENCLTEI DGAITLLNLD FRARPIKSDH DEEIKIFEAK EEKYLEPPVL DINQDDKIEE PMLLPNSDHD PIADQCGNDS DNGSDVLEGI RFSESRVEFK DVKDYSGFNI IVDGLTIDSE VPALHIRTKY YDLCRAQNSF LHDHLLAGLN VKLAAGMITE TVNIADAIRA CESWTPREYL DTWDNTLKGF ECLGMNVGFL RARISKLDSL SSESKDVLES KKVELAEAKE EMRIIEEKVL KVKQVMKNVE SEIEALTKKD ANFELKFKAL AASPW // ID K4C9B6_SOLLC Unreviewed; 184 AA. AC K4C9B6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g073980.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g073980.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g073980.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g073980.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4C9B6; -. DR EnsemblPlants; Solyc06g073980.2.1; Solyc06g073980.2.1; Solyc06g073980.2. DR Gramene; Solyc06g073980.2.1; Solyc06g073980.2.1; Solyc06g073980.2. DR InParanoid; K4C9B6; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 184 AA; 21099 MW; 25B9FE42900A7A7E CRC64; MVTPVEHVSI PHDLPEFFKI FHPEICYPQL FYVKIYGKNG CLKEDVTALK EPELLPLVEE KARGKSIVAE PADQTDNGSG DMASSVTSFE IVIKASHLNR ARLNLPAPFG NCYLKRKKRP LMATLRTDSG SWTIVPQYYD RLELREGIQK FIDDNALRVN DVCRFKLIDD EKLILKVRIK RQPK // ID K4C9D4_SOLLC Unreviewed; 254 AA. AC K4C9D4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g074160.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g074160.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g074160.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g074160.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004242112.1; XM_004242064.3. DR PaxDb; K4C9D4; -. DR EnsemblPlants; Solyc06g074160.1.1; Solyc06g074160.1.1; Solyc06g074160.1. DR GeneID; 101264021; -. DR Gramene; Solyc06g074160.1.1; Solyc06g074160.1.1; Solyc06g074160.1. DR KEGG; sly:101264021; -. DR eggNOG; ENOG410JKB4; Eukaryota. DR eggNOG; ENOG41113KV; LUCA. DR InParanoid; K4C9D4; -. DR OMA; RSWRVVI; -. DR OrthoDB; EOG09360N6X; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 254 AA; 29497 MW; 953289747040FAF8 CRC64; MERNYVGNGF PAFIKVYSPE TCYLKLKIPS RFFKNLNGDI PVISLLEVEG SARRSWRVVI EKIEEDFYFK GGWTKFVQDN NLENEDYLNF LYAGNSTFSV KIYGTNGYLK QELNAIAELE LHPLDEENPN EIQVVSPLAD EELDGSENSL VSVTLFEIVM KKSNFSNMLL NFPSTFGKKY MKRGQVFEKM ATLQTDGKSW PVVVRSSDRL KLRKGWRQYL QDNDLHVGDV LRFKLIDEEN FILKVLIRRI TFDC // ID K4C9N1_SOLLC Unreviewed; 671 AA. AC K4C9N1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g075150.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g075150.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g075150.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; NP_001234880.2; NM_001247951.2. DR UniGene; Les.24077; -. DR STRING; 4081.Solyc06g075150.2.1; -. DR PaxDb; K4C9N1; -. DR EnsemblPlants; Solyc06g075150.2.1; Solyc06g075150.2.1; Solyc06g075150.2. DR GeneID; 100736511; -. DR Gramene; Solyc06g075150.2.1; Solyc06g075150.2.1; Solyc06g075150.2. DR KEGG; sly:100736511; -. DR InParanoid; K4C9N1; -. DR OMA; FEMERLD; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 652 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 103 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 671 AA; 74911 MW; BCE19D9F0FFA1B4E CRC64; MEVVEEKCVD SLFWHVCTGS MVQIPPVNSK VFYFPQGYAE HTFTNVDFTV LARIPAMILC RVDAVKFLAD TETDEVYAKI RLIPVEDFED DSVVEETEKP AFFAKTLTQS DANNGGGFSV PRYCAETIFP KLDFTADPPV QVVKAKDVHG VTWNFRHIYR GTPRRHLLTS GWSAFVNKKK LVAGDSVVFV KAENDELCVG IRRVKRGGIG GPETQSGWKS TACSYGGFVT EDENSSTNGN LISYGERFRD KGKVSPDEVV RASCLAANGQ PFEIVYYPGA STPEYCVKAS SVRAAMSVQW CSGMRFKMAF ETEDFSQISW FMGSISSVQV VDPIRWPHSL WRLLQVTWDE PDLLQNVKSV NPWLVELVSN MPDINLSHNS PPRKRLCLPQ EFPFDGQFPL PSFSGNPLTS SSYSRYPSDS ITAGIQGARH VRFGVPLLDL HRSEKLQLGV LQPPVSQQAD ADSEIPIGTS KVQKESNENI SCLLTMGTSS QMEKADNVKT PRFLLFGQPI LTEQQMSSVL STHAPPQVQT ERNSDWAQLK TERITPDWKC LSESLSSTFL WNKGYHAAEL GASTDHCKVF LDSEDVGRTL DLSVLGSYAE LYKRLADMFE MERLDMVTRV LYLDATGASK QIGDEPFSDF IKTAKRLTIL KKSGNSATRK WLTDLPILNV V // ID K4CAB1_SOLLC Unreviewed; 845 AA. AC K4CAB1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g082520.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g082520.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g082520.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g082520.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004242480.1; XM_004242432.3. DR RefSeq; XP_010323114.1; XM_010324812.2. DR RefSeq; XP_010323115.1; XM_010324813.2. DR RefSeq; XP_010323116.1; XM_010324814.2. DR PaxDb; K4CAB1; -. DR EnsemblPlants; Solyc06g082520.2.1; Solyc06g082520.2.1; Solyc06g082520.2. DR GeneID; 101245071; -. DR Gramene; Solyc06g082520.2.1; Solyc06g082520.2.1; Solyc06g082520.2. DR KEGG; sly:101245071; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K4CAB1; -. DR OMA; MHSEDAL; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 541 591 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 317 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 845 AA; 93502 MW; 0729F5AD4448B73A CRC64; MGSMICMNEL CRATTSVEWK KGWGFKSGGF AKLCYNCGSA FENFVFCETF HPDESGWREC RTCRKPIHCG CIASKYLYEY LDYGGVTCIK CAHHLDGHSI RPIQIPGDDF PIGNLGSKSA KPLGIENKID ENDFERRRFM QTNEPGQLFH TQRNDKKQDP MLPIGNVGTC FSNLNQQNIG ASLFGKPDNE RPSQGVKDMY DSINQPSLNF CLSTPIGTSS SGQPFLGGDV EGREQSKTSP FQQGQRARHI LPKPPKPSPT SGSESVKGMV SQARIARPPA EGRGGRSQLL PRYWPRITDQ ELEQIAGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPINQSE GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI FSRIDPGGKL VMGFRKATNN VDMQDPQTPN LPSGNGSGET SFPGMADNFP NGGRTSDDTM NRQVPMSEKK KARNIGSKNR RLLMHADDAM ELRITWEEIQ ELLRPSPTAK PNIVVVEDCE FEEYEEAPVF GKRTIFTARS SGDQEQWAQC DSCSKWRRLP LHILLPAKWT CSDNIWDSRR CSCAAPDEIS PRELEALLRV GKDPKRRKLV ENNEDLESSG LDALATVAAS DMGDSIGDMG EPSVGATTKH PRHRAGCTCI VCIQPPSGKG KHHPTCKCNV CLTVKRRFKT LMLRKKKKQS EREAELAQAK DQVPPKDESE TDGMTSGVEL LQMNHSENEH MNHSDNERNS NGDQVEEFGP GKGQLDLNCH PNRDDDMLAE ATAGMSMTSL VNATNLPLEY LTQNRLESLG NSLLSQAASE SEGHHPDNGF GKTADVESGG KGAKA // ID K4CAL4_SOLLC Unreviewed; 579 AA. AC K4CAL4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g083590.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g083590.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g083590.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g083590.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010323011.1; XM_010324709.2. DR RefSeq; XP_019069689.1; XM_019214144.1. DR UniGene; Les.9711; -. DR STRING; 4081.Solyc06g083590.2.1; -. DR PaxDb; K4CAL4; -. DR EnsemblPlants; Solyc06g083590.2.1; Solyc06g083590.2.1; Solyc06g083590.2. DR GeneID; 778203; -. DR Gramene; Solyc06g083590.2.1; Solyc06g083590.2.1; Solyc06g083590.2. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; K4CAL4; -. DR OMA; EIWLDDH; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 445 547 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 445 547 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 579 AA; 65440 MW; F6925B47B45BAE32 CRC64; MKRELNDVYY GGNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS SSTSNSLPTE QSDPSSGWAV QKSDADEQDF DTISDQECLN VMDLIDGDHE FLDPMISFFN QQQKEQANEE QVSIFQGDSE LALMFLDWLK QNKDNISAED MRSIKLKRST IESASKRLGS TKEGKKQLLR LILDWVEQHR LQKKQMREEQ SIQNSAPFNF NNPNACFYNA SFTDSSSVMT GPIQGYFGDL NSNGSLFVPP YNQTMSGSST SQSWSQSQFI MANASQYNRF PENNITNNVA IPDQPLFSAQ YDQYQIFDGS GERLARLGTC ATKEARKIRM ARQRRVPLHH YRHQTQNQRQ ISNEKSVMMG RKINNCAISQ ANNPGNWVYW PCAAAAPPIA MVPLADTPQS LPMERSPVQS QKHQKHGSTD KRQACKTEKN LKFLMQKVLK QSDVGHLGRI VLPKKEAESH LPQLETRDGI SIAMEDIGTC RVWNMKYRFW PNNKSRMYLL ENTGDFVVAN GLQEGDFIVI YADIKCGKYL IRGVKVRPNG AKSDGMQPAK KIVRKIAAVA SSPFAQAVG // ID K4CAL5_SOLLC Unreviewed; 620 AA. AC K4CAL5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g083600.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc06g083600.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc06g083600.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc06g083600.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004242390.1; XM_004242342.3. DR UniGene; Les.24410; -. DR STRING; 4081.Solyc06g083600.1.1; -. DR PaxDb; K4CAL5; -. DR EnsemblPlants; Solyc06g083600.1.1; Solyc06g083600.1.1; Solyc06g083600.1. DR GeneID; 101244009; -. DR Gramene; Solyc06g083600.1.1; Solyc06g083600.1.1; Solyc06g083600.1. DR KEGG; sly:101244009; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; K4CAL5; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000004994; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 483 585 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 483 585 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 70493 MW; 82856569293DA51A CRC64; MERELHGVDN ENENTNLVDI QMLQQQQQHD CTDFDPMDET DIWLNENFST DFTSLQDFPC MSSSSSTSFS PPTESDPSSG VVLKSDADEQ DFDKKIDTIG DQECLNVMDN VGYIDVNEFL DPMISFLHNE NPQEQQQQQQ QQQLLPQEDD DQGFSFFQGD SELALMFFEW LKQNRDYICA EDMRSIKLKR STIESASKRL GSTKEGKKQL LRLILDWVEQ HRLQKKQMRE AEAINQQALQ NSVPYNFDPN ACFYPPQWIP NAPFPDSSTP IMTGPIQGYT SDPYSNGGLF PPPYSQTMSG GATSPASAEY QPMDTSQSWS PSQFTMATTS QYNPFPENDS TNNVAMPDQS LFGAQYDPYQ LFDGNGEIVP RLGSCATKEA RKNRMARQRR LRPHHYRHQA RNPRQITNEQ SVMMAGEINN CVMTQANNPG NWVCWPSPPM AMVSQSLPPE RPAMQSQNQQ KQVSTSADKK QAFKSEKNLK FLLQKVLKQS DVNNLGRIVL PKKEAERHLP HLETRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN TGDFVKANGL QEGDFIVIYA DMKCGKYLIR GVKVRQNGPK SEGKKQMKKN PRKLSSAAAI SSSPVAQAVR // ID K4CCD5_SOLLC Unreviewed; 1112 AA. AC K4CCD5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc07g016180.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc07g016180.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc07g016180.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; NP_001234740.2; NM_001247811.2. DR UniGene; Les.10065; -. DR STRING; 4081.Solyc07g016180.2.1; -. DR PaxDb; K4CCD5; -. DR EnsemblPlants; Solyc07g016180.2.1; Solyc07g016180.2.1; Solyc07g016180.2. DR GeneID; 100498663; -. DR Gramene; Solyc07g016180.2.1; Solyc07g016180.2.1; Solyc07g016180.2. DR KEGG; sly:100498663; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; K4CCD5; -. DR OMA; AVYSHQI; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000004994; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1001 1085 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1112 AA; 123332 MW; C9AC2AB69166F94A CRC64; MKTPVNTAGV QQQHTVNGNP GEVEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ VAASMKKDVD AQIPNYPNLP SKLVCLLHNI TLHADPETDE VYAQMTLQPV PSFDKEALLR SDLSMKANKP QTEFFCKTLT ASDTSTHGGF SVPRRSAEKI FPPLDYSMQP PAQELVARDL HDNLWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKATYSSQV SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS IWEIEPVTAP FFICPTPPFF RSKRPRLPGM PDDDCSDLDG LFKRTMPWLG DDFGMKDPQG LPGLSLVQWM NMQQNPSLAN SMQPNYLHSL SGSVLQNVGG GADLSRQLCL PAPQLPQQNT LQFGSQRPTQ QVQQLDQLQK IPTTTLSPAG SIMQPQQQLS DISQQPRQNL INQSVPTNHV QAQLLQAQSL VQSQNVLQQQ QSFQNQLQRN LPQNLPQQQQ IMNQTQQQSF MQPQPSDPLN QQLHFSDNQL QMQLLQKLQQ QSLLAQQSLL QQPSQLMPIQ DQQKHLDVSQ NFSRSLATSQ MLDMSQTTSN STSLSQPQVA QQQMTINNSQ SNLRFAQPNQ HMKQQQQQQQ PGILPEIPGQ VGQILPPTTN QLSANCSSFL TGAVGGGQSV VTDDIPSCST SPSTNNCQNV VQPIMNGRIH RGTAAAEETT QSSLPLLSSS GLEAMSPNRN LVKDLQQKPD VKPSMNISKS QNHGFSTPQT YLNNAVPQMD YLDSSSSATS VYFSQNDVQL QQTTNPMSFS SQAIVFRDSQ DGEVQGDPRH SVAFGANMDN QLGISMMPDS LITNSLVGSR KDVSNNISSG GGMLSSYENP KDAQPELSSS MVSQSFGVPD MAFNSIDSTI NEGSFMNRGA WAPPPQMPRM RTFTKVHKRG AVGRSIDIAR YSGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQIS LDGDFGNNVQ NQACSSSDGG NV // ID K4CCG2_SOLLC Unreviewed; 96 AA. AC K4CCG2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g017470.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc07g017470.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc07g017470.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc07g017470.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CCG2; -. DR EnsemblPlants; Solyc07g017470.1.1; Solyc07g017470.1.1; Solyc07g017470.1. DR Gramene; Solyc07g017470.1.1; Solyc07g017470.1.1; Solyc07g017470.1. DR InParanoid; K4CCG2; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000004994; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 75 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 75 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 96 AA; 10748 MW; 83EE5B5AE67C8C27 CRC64; MSKELPFDGA PAVLSYGGKK WNLIYGGAKT KYKFSTGWKN FADDNNLKEG DGLVFELSEC NSDKIEFKIQ ILREDFPAEL VPDVEGMNTN NPIIID // ID K4CE89_SOLLC Unreviewed; 1137 AA. AC K4CE89; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc07g042260.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc07g042260.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc07g042260.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004243692.1; XM_004243644.3. DR UniGene; Les.22486; -. DR STRING; 4081.Solyc07g042260.2.1; -. DR PaxDb; K4CE89; -. DR EnsemblPlants; Solyc07g042260.2.1; Solyc07g042260.2.1; Solyc07g042260.2. DR GeneID; 100191131; -. DR Gramene; Solyc07g042260.2.1; Solyc07g042260.2.1; Solyc07g042260.2. DR KEGG; sly:100191131; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; K4CE89; -. DR KO; K14486; -. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000004994; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1011 1095 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 514 541 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1137 AA; 127856 MW; 5462CF533A9BA143 CRC64; MKAPSNGYLP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYDQEALL LSEMGLKQNR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYAMQ PPAQELMARD LHDQTWTFRH IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRTNRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF ETEESGVRRY MGTITGVSDL DPIRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPSFP GDESDIENVL KRGMPWINDE LGLKDAQNSI FPGLSLVQWM SMQQNNHVPV AQSGLPSVLH SNIGSDDHSK LLNFQSPALA TPGLQFNKPN QLNQPFGQIQ QPPLAWTQEQ QQSLQSPVSA QQQQQQQHTL QQQQQQQQHT LQQQQQQRHT LQQQQQQQTL QQQQQQQQQQ HTLQQQQQQQ HTLQHQQQHT LQQPQQHMLQ QQPQFHQQAQ QQLQQQQRPS QQQQLTGNSS PVNRCVSPNQ IPNQTFPQAA VYGQLQQQQV LSASTQSQQN VPVSRNSFPS TSLAQDFQFQ QQMEQQSNLL QKSQQQQTIP QQAPLQLLQQ SLMQRSQVQP SSQQSLTEQQ LQLQLLNKLQ QQQQQQQAQL LSPVSSTLEP RMPQQQQNRQ PQELQFAHQQ LSSNIVTTVT HLQSTHHAFN QLQNHHKSPI TIKALSGGTE GDAPSCSTSP STNNFQVSPP NFLTRNQGQA ILVDESVVDP SQEQNKSECR IKHELVFSKG SELSKYKGNN TENLEAASST TSYGLDSSGF NFSLPALCVD GDVQSHSRNI LPSAANNIDG LNPDALLSRD YDSGKDIQNL FSPFGNAPRD IETELSDAGI NSQQFGVPNM SYKPRCANDL AVNDNGILNN NAWTNQTQRM RTYTKVQKRG SVGRTIDVTR YIGYDELRHD LARMFGIEGQ LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSCAEVQQMS LNGDLGNVPV PNQASSGTDS GNAWKGHYDD NSAASFN // ID K4CEL9_SOLLC Unreviewed; 525 AA. AC K4CEL9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc07g043620.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc07g043620.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc07g043620.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CEL9; -. DR EnsemblPlants; Solyc07g043620.2.1; Solyc07g043620.2.1; Solyc07g043620.2. DR Gramene; Solyc07g043620.2.1; Solyc07g043620.2.1; Solyc07g043620.2. DR InParanoid; K4CEL9; -. DR OMA; TNTRFTI; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000004994; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 525 AA; 58647 MW; 53F9A7B886D80A64 CRC64; MRVSSSGFNP QPEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSVQVAASTN KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSPQEQK DVCLLPAELG IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW KLRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTLMPS SVLSSDSMHI GLLAAAAHAT ATNTRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR FRMLFETEES SVRRYMGTIT GISDLDPVCW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNVGLTMNSP LSWLRGDMGD QGMQSLNFQG FGATPFMQPR MDASMLGLQP DILQTMTALD PSKLANQSLM QFQHSIPNSS APLSQIQMLQ PSHSQHNLIQ GFSENHLISQ AQMLQQQLQR RQNFNDQQQL LQPQL // ID K4CG05_SOLLC Unreviewed; 578 AA. AC K4CG05; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g054630.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc07g054630.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc07g054630.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc07g054630.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc07g054630.2.1; -. DR PaxDb; K4CG05; -. DR EnsemblPlants; Solyc07g054630.2.1; Solyc07g054630.2.1; Solyc07g054630.2. DR Gramene; Solyc07g054630.2.1; Solyc07g054630.2.1; Solyc07g054630.2. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; K4CG05; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000004994; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 66047 MW; 2908453E4332623D CRC64; MESCSNSYSA GSFYVIVEPS VMDDRQLRLP DKFVREHGDE LLDTVKIIVP TDDFWCVGLK KAGKMIWLHD GWQEFMEHHS VNCWYFLLFK YGQTSCFNVH IFDLAATEID YQLRSHGYAK SRDVAQDLSH RKDKIVGDNG FTSSIEIVDL LETEQGPESS AKSSELPHRA KRRKIASGKI KITRCYETRS KTNKLHDNGQ LLNAKNLNIS GNGSLTKPVG GKSVRRSIKT PIHSAVATGG TRKLFTSKQR EKSLGRGRYD RRERAQQKVS ETSRAIQTAK MFIPENPYFL QILEKYNVER NYILNIPVEF VRKYMPKTSE LIELQDTDGN KWKVRCIRRK LRVLLSKGWL NFVTDNSLLV GDVCVFELLK NFQAVALILK VHMFRNRVEE NSKNLHTGSL FEQTLSTGKN CVLQFDESKH TKSSDAFEPL SSDRTNHKTD TENSFGQQQE KSVVHGSSGN RRKRGRPMDA EANTDTENSF GQQQEKSVVH GSSGNRRKRG RPRDAEANTD TENSSRQQEE KSVVHGSSGN RRKGRRLRDA KGNSATTAAK MFTPENPYFM ITLGEYHVVR NYILFQWN // ID K4CIA8_SOLLC Unreviewed; 544 AA. AC K4CIA8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006190.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006190.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006190.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006190.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CIA8; -. DR EnsemblPlants; Solyc08g006190.1.1; Solyc08g006190.1.1; Solyc08g006190.1. DR Gramene; Solyc08g006190.1.1; Solyc08g006190.1.1; Solyc08g006190.1. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K4CIA8; -. DR OMA; RRCKMIL; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 431 525 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 431 525 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 544 AA; 62315 MW; DB07091CA258BE8B CRC64; MKFAPKKPHF FKPILPNFKH GIKIPVAFCK HLKGCNQEHA ILRKSDKKWQ VKVNGRLLDE GWAIFAKEND LQLGDCLIFR HEGDFEFEVS IFGSNHFERV YEQTPKGGEE INHTCNKIIS QAKTTEKTKL NVKSNEIIPE VEAAENMPLD RPPFIFTVTP YCLTRGHVQL PVQFARDNSL MNRRCTITIR DEQRSLTFAL YSSGARTYIK GQWREFCIAN CLKKGDQIML AIVDNGMNPV LRFYGNSDVI IFNLKLDLRT NASLQLEVKK PNLDAEEVSS RKEVATVPAS TSANANAQFV SIIHPYAIIR ALFYLPLSFA RPNGLMRRCK MILKDEKQRS WSVQLEEVGP RFAITKGWRQ FREANDVQVG DTYKFELIHN GTTPVAYFHR TRANASVQPE EKKPNLDARR VSARSNEADV PASTCDNANT QFVSTINPHC INSPFIYLPS AFAKSNSLVN RRCKMILRDE KQRSWSVVLA PMGHHTAITK GWRQFREANG FQVGDTYKFE LIDNGTIPIA YFHCEYIYFP SFHYVPPCYA TLFQ // ID K4CIA9_SOLLC Unreviewed; 566 AA. AC K4CIA9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006200.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006200.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006200.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006200.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CIA9; -. DR EnsemblPlants; Solyc08g006200.1.1; Solyc08g006200.1.1; Solyc08g006200.1. DR Gramene; Solyc08g006200.1.1; Solyc08g006200.1.1; Solyc08g006200.1. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K4CIA9; -. DR OMA; FICTITH; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 183 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 322 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 465 558 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 183 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 322 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 465 558 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 103 138 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 566 AA; 65676 MW; 2A71A6BF9ADB769F CRC64; MKIPSKKSHF FKPILTGFMD GLNIPIGFMK YLRGQDYIKH ALLKSAGKKW LVKVNGRRFK EGWRKFVEDH DLQLGYLLIF RHEGDMEFDV SIFDSTHCGR EYVEYLQVEQ EQKQRQQEEE EEEEKEDDDD DEEEEEVEEV VHTTEETSMD FEFKEKSSSS IESSDEASSH SEASTDKSFG HSRFICNITA CCFSYGYLRI PKHAAFANGH VTNKKYDLLI RDEKQRSWNV KLHSCQTQTY IGGGWRKFSA DCCLKEGDRI IFEIVTGGET PIWKFQVVTD AKTPMRKFQE NATESPKPCV MSSNKDLPDV EAAKDMPWSR PHFICTITHS CISKYLLHVP TLFARENGLD RKCRVKIRDE QQRSWMFKLY VTAHNIFIGG IWHEFCSANF LKEGDRVMFE MFSKGEGLVL KFHDLRANAS LQREQKKPNL DVKRVYTQGL RIEPSDVPAP KAQLPTPTSA NTNPHFIATI KSNTISRSVL YLPMAFIKST GLMNRRKIIL TDEKQRSWPV QLTQRVDRFV ITKGFQKFMK ANGVQVGDTY KFELIDDRTI HVVYFPCKYA VKDEKA // ID K4CIB0_SOLLC Unreviewed; 401 AA. AC K4CIB0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006210.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006210.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006210.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006210.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CIB0; -. DR EnsemblPlants; Solyc08g006210.1.1; Solyc08g006210.1.1; Solyc08g006210.1. DR Gramene; Solyc08g006210.1.1; Solyc08g006210.1.1; Solyc08g006210.1. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K4CIB0; -. DR OMA; SECGGRW; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 158 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 46314 MW; A82255E5200227B5 CRC64; MKIPPKKPHF LKPILPGCKQ QITIPIGFFK YLKGQENEYA LLRRASKKWS VKVNGRRLED GWEEFVKDHD LQLGNVLIFR HEGDMEFEVA VFDSSCCERE YEQGVHVHGG EEEEACIVEE SSKKLKSKEK PKRKVKKSGK GFSNVKAAYK DKHLSRSHFI CTIRPYCLSK YCLCIPKQFA QENSLRNRKC EIIVRDEQRS WTFGVHTNGK NTFIGSGWHE FSRTKCLKEG DILMFEIVSN GETPIFRFHD LRESPFLQDE VKKKDSDAER MSDEDATLET SDVTTPKSQE AADANPHFIS TIKPYTLRFP VLYLPIAFAK SNGLLDKREL IIMDEKRRSW SMCLGQIDKY HFGIKKGWRK FIEANGVQVG DTYKFELINN GTIPLVHFHC KYDDVGDGKG N // ID K4CIB1_SOLLC Unreviewed; 246 AA. AC K4CIB1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006220.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006220.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006220.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006220.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CIB1; -. DR EnsemblPlants; Solyc08g006220.2.1; Solyc08g006220.2.1; Solyc08g006220.2. DR Gramene; Solyc08g006220.2.1; Solyc08g006220.2.1; Solyc08g006220.2. DR InParanoid; K4CIB1; -. DR OMA; HFISTIR; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 28601 MW; 1F72DE647D4B2ABB CRC64; MKVASKKPRF FKPIQPGYKH CIKIPIGFLK YLKGLNHIKQ AILRSRGKKW LVKVTGWRLE EGWKKFAKEN DLQLGDLLIF KHEGDMEFEV SIFDSSHCDR EYAEYLQEEE GNYVDATSKK VEKDLRHKTS DMTTPISQTP ASTSADADPH FISTIRRYTF TKAILYFPMR FVKSNGLMSR SEMILVDEKQ RSWSVLLGQM EHHFGIKRGW PQFRKANGLQ EGDTYKFELT NNGTIPIIHM SKYSGN // ID K4CIB2_SOLLC Unreviewed; 334 AA. AC K4CIB2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006230.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006230.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006230.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006230.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc08g006230.2.1; -. DR PaxDb; K4CIB2; -. DR EnsemblPlants; Solyc08g006230.2.1; Solyc08g006230.2.1; Solyc08g006230.2. DR Gramene; Solyc08g006230.2.1; Solyc08g006230.2.1; Solyc08g006230.2. DR eggNOG; ENOG410JT8H; Eukaryota. DR eggNOG; ENOG4110837; LUCA. DR InParanoid; K4CIB2; -. DR OMA; YVIMLEL; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 252 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 38881 MW; 854EF7CF2A95190F CRC64; MICNLGDLLI FKHEGDMEFE SSSDCDENRF KETSNFSNRF SQVSILKIPI DFLKYLEGMN HIKHAILKSM GKKWLVKVNG WRLEEGWEKF AEEHDLHLGD FLVFKHEGDM EFEVSIFDSS HCDREYTEYL LEGVDNAEET FKKVKFKEAA THNCRGQSHY QCIVRPNYIS NGYLRLPKHF AIANGLTNKK CDLIVRDERQ RSWNLRLVAY DSCVRVYGEW SNFCIVNNLK KGDYVTFEIV PYGEKICKTS YLPMDFVKSN GLMSRSEMIL IDEKQRSWSV WLGQTGHQFG IKRGWTQFRN ANGIQLGDTY KFELTNNGTI PIAHVSILEV KGCE // ID K4CIB3_SOLLC Unreviewed; 504 AA. AC K4CIB3; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006240.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006240.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006240.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006240.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CIB3; -. DR EnsemblPlants; Solyc08g006240.1.1; Solyc08g006240.1.1; Solyc08g006240.1. DR Gramene; Solyc08g006240.1.1; Solyc08g006240.1.1; Solyc08g006240.1. DR InParanoid; K4CIB3; -. DR OMA; FAMENDI; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 370 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 386 481 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 370 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 386 481 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 504 AA; 58982 MW; 887EF388592B98FF CRC64; MKIPPKKPQF LKPIHKGFKH GLKIPIGFLK YLKGHDQHEH AILRSAGKTW LVKVNGWRLE EGWKKFANEN DLHLGDMLVF RHEGDMEFEV SIFDSSHCDR EYAEYLQQEA GFNNVEETCK KFEFKGKSNL CIMSSGEALP YAEAATYNPC SRSHFECIVK PYCITHSYLR LPKHFAMEND IFNKKCDVII RDERQRSWKL RLATHDCRVH LLGGWREFRV ANDLNVGDYM MFEVIANGEK PIWKFRGDKP NANIVSTRKA FPKEEFATCS SFTQSHVECI VRPYCLKRNY YRLPRGFARA NGLINTKCGL VIRDERQRSW NLRIDTYGYG VYIAKGWSKF RVENDLKEGD RMMFEVVSNG EKPIWKFYGT NTNKNKNKNK PFAQSHFVCI IRPYCLVNDF LYIPTKIAHA YRLTNKKCDL VIRDDRRERS WNVKLRSFGN SVCIKGGWRV FRDANCLKEG DCIMFEVVSN GENTTWKYNG KISTKDHKKP IDKDNVKKLV MGKH // ID K4CIB5_SOLLC Unreviewed; 251 AA. AC K4CIB5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006260.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006260.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006260.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006260.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CIB5; -. DR EnsemblPlants; Solyc08g006260.1.1; Solyc08g006260.1.1; Solyc08g006260.1. DR Gramene; Solyc08g006260.1.1; Solyc08g006260.1.1; Solyc08g006260.1. DR InParanoid; K4CIB5; -. DR OMA; VMANGIK; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 29393 MW; 319ED14425695A86 CRC64; MEVTSVQPHF FKPLLPGFKN SLKIPDGFLK YLEGCEEKGR ALLKKGGKKW VVKLNGQKLE EGWGQFAEEH DLKLGDMLIF RHEGDLEFDV TVFNLNHCDR EYAEYEEEEE EVRTVEETST NFEFKEGSTH IPFGQSQFIC TVKPYCLRNG YLRVPCKFAK ANGLTNKECG LIIRDERQRS WNLRIYTSCS QVYIGGRWSE FRAANDIKKG DQIMFEVVSN GEQPIWNFHG WQRITTDTIW CFFVKELWLH L // ID K4CIB6_SOLLC Unreviewed; 195 AA. AC K4CIB6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006270.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006270.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006270.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006270.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CIB6; -. DR EnsemblPlants; Solyc08g006270.1.1; Solyc08g006270.1.1; Solyc08g006270.1. DR Gramene; Solyc08g006270.1.1; Solyc08g006270.1.1; Solyc08g006270.1. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 195 AA; 22406 MW; 1178544E408DF313 CRC64; MFEVVTNGKQ PVWKIHHLTN PSTVEEPSEN SVFKETAPHN PIGQSHFECF LRPYCISKGY LRLPKQFSMA NGLINKKCGL IIRDERERSW NLRLYTHNSI VHILGGWSEF CVANDLKEGD YMMFEVVVNG EKPIWKFHNK PTPSIKSSRN VEAANHKPAD HSRFVCTIKP YCLTYGYLCL PKQFVDGISS VRHIA // ID K4CIB7_SOLLC Unreviewed; 565 AA. AC K4CIB7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006280.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006280.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006280.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006280.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010324533.1; XM_010326231.1. DR PaxDb; K4CIB7; -. DR EnsemblPlants; Solyc08g006280.1.1; Solyc08g006280.1.1; Solyc08g006280.1. DR GeneID; 104648601; -. DR Gramene; Solyc08g006280.1.1; Solyc08g006280.1.1; Solyc08g006280.1. DR KEGG; sly:104648601; -. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K4CIB7; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 454 549 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 454 549 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 565 AA; 65489 MW; 467F822AAC4B8598 CRC64; MATMKGYSEK PSFLMFISPS LKQGFTFPDE FLKHLKGHDQ YEHAILRWAN KNWPVKLNGV RLEDGLEKFV EQNNLEEGEI LSIEYEGNMK FEAIRFDPSK QCEILEVQPR APKVVKSSDE SKSKGAATQK HLGHPYFVCT IRPYSFKYGY LCLPLDFVTK NNLRHKIGDL IIRDEKQRSW NLRLNSFSSK RFVLNGGWPE FSNANDIKEG DEVMFEIVSN EEKQIWQFKK KASNNVKSSL LVEPPKVKSR KPSQRRDIKA MMVDVVHMPV DKLIHKNKSS FVAKTPKSKS RELRQRQELE DQTLKAFPHK SFDESNHNIK SAPLAKTPKP KSRRPAERDD FEDRSLEAVT HKPNEPSKLK LGGLHQRQEF EEGTFEAATH KSLDKPTHKK LKSTPLAEPS QSKPRELPQK QNFEDQTTNV ATQKPHDESN YYTTSSKEAT PLKDDPHKSS DNPCILINVN PYCLVTDTLL IPEKFALAND LFRIKKCDLI IRDDNDRSWN VTLREHNNYV FIKDGWKKIR DTYYIKEGDQ IMFEIVTGGD KPIWKFHGKI SKEFVKMIQQ NGLEQ // ID K4CID7_SOLLC Unreviewed; 276 AA. AC K4CID7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g006490.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g006490.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g006490.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g006490.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_019070638.1; XM_019215093.1. DR PaxDb; K4CID7; -. DR EnsemblPlants; Solyc08g006490.1.1; Solyc08g006490.1.1; Solyc08g006490.1. DR GeneID; 101253303; -. DR Gramene; Solyc08g006490.1.1; Solyc08g006490.1.1; Solyc08g006490.1. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; K4CID7; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 159 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 159 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 32330 MW; 9A0CB910553C4D0F CRC64; MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW SMKVNGHRFE AGWVEFVEQH GLKLGNILMF RHEGNMEFEF SIFDSSHCDR EYVEYMEEVG DHTREEISKK FKFKEDATER PRQKIKSSRK TSSHIIKVAN HHKSFGHSHV ECTIREYNIS RGYLHLPRQF AYANGLANKK CDLIIRDERQ RSWNVKLSSS KTRSYISGCG RTKFFADNCL NKGDCIMFEV VTNGETPIWK FQVTYREVPL QMFQGKFSHV TNLLFL // ID K4CIX2_SOLLC Unreviewed; 683 AA. AC K4CIX2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g008380.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g008380.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g008380.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010324457.1; XM_010326155.2. DR RefSeq; XP_019070562.1; XM_019215017.1. DR UniGene; Les.25604; -. DR PaxDb; K4CIX2; -. DR EnsemblPlants; Solyc08g008380.2.1; Solyc08g008380.2.1; Solyc08g008380.2. DR GeneID; 100736462; -. DR Gramene; Solyc08g008380.2.1; Solyc08g008380.2.1; Solyc08g008380.2. DR InParanoid; K4CIX2; -. DR OMA; EDISSHW; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 599 622 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 683 AA; 76146 MW; 7B7C45F81FB3DC0E CRC64; MENQGSFMSN QQHQQHNFLA EGEDELCQEL WRLCAGPLVD VPKNEERVYY FPQGHMEQLE ASTNQELNQS IPLFNLQPKI LCRVLHIQLL AEQDSDEVYA QIALLPEADQ VEPTSPDLSL PEPPRPKVHF FCKVLTASDT STHGGFSILR KHANECLPPL DMTQATPAQE LVAKDLHGFE WHFKHIFRGQ PRRHLLTTGW STFVSSKRLV TGDSFVFLRS GKGEVRIGIR RLARQPSSMP QSVISSQSMH LGVLATASHA VTTQTMFVVY YKPRTSQFII GLNKYLEAVK HRYSVGMRFK MKFEGEEIPE KRFTGTIVGV EDSSSQWKDS KWRSLKVQWD EPASVPRPDR VSPWDIEPFV ASVATPLVPP MGVKNKRHRA HNEPKSSEPV PAAALAAWIP SAQFNPVIEG QSSDNPFSLH TSQTNSTATN STFKARVDGI WSASKVNASL NMLLDETEAS KSASPRPAFP SFASSQFGKQ NDLLLPSLDD ERKCGTITSC RLFGIDLKCP SFGSVNENPP LEPANNSDGS AEGCSGNLTS AGDSEDNSGL SRDSEDQKQE QLNPPPKEVH IKQVSSTRTR TKVQMQGVAV GRAVDLTKLN GYDELLRELE ELFDIQEELH ARNKWEIVFT DDEGDMMLMG DYPWSEFCNI AKRIFICSSQ DMKSFSAGTK SPSCLESETT AST // ID K4CJ04_SOLLC Unreviewed; 324 AA. AC K4CJ04; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g013690.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g013690.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g013690.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g013690.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CJ04; -. DR EnsemblPlants; Solyc08g013690.1.1; Solyc08g013690.1.1; Solyc08g013690.1. DR Gramene; Solyc08g013690.1.1; Solyc08g013690.1.1; Solyc08g013690.1. DR eggNOG; ENOG410JBK3; Eukaryota. DR eggNOG; ENOG4111BY3; LUCA. DR InParanoid; K4CJ04; -. DR OMA; EIRWGGC; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 36672 MW; 9E2BFFD4A973A541 CRC64; MNFFGSVVGE EEASSSSYNS QQLKRPSSST TTELMLMDSS STCDALVERE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSSNNKGG LLLNFEDSNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDVVSFQ RGAGELSKHR LFIDWRRRPH HENGNNQFML PHQFSDGRLF YYPTTFSSNL LLEGGSNIVH PPNYYNPQSY MYEIGNRSYN ISNGTVINAN PLKNEIRWGG CSSTTTTGNY VEPRVFDSVP VVQGKVAAKR FRLFGVNMDC PMDQDHPDTS SIPATTTVYS YLNNNNSTPS EESSKKGKSF DLDI // ID K4CJ05_SOLLC Unreviewed; 294 AA. AC K4CJ05; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g013700.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g013700.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g013700.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g013700.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004244810.1; XM_004244762.3. DR PaxDb; K4CJ05; -. DR EnsemblPlants; Solyc08g013700.1.1; Solyc08g013700.1.1; Solyc08g013700.1. DR GeneID; 101268779; -. DR Gramene; Solyc08g013700.1.1; Solyc08g013700.1.1; Solyc08g013700.1. DR KEGG; sly:101268779; -. DR eggNOG; ENOG410JBK3; Eukaryota. DR eggNOG; ENOG4111BY3; LUCA. DR InParanoid; K4CJ05; -. DR OMA; PFSGHAT; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 33709 MW; B4A7D337B20D2251 CRC64; MNLFNSTMIH DEASDSASCY YSQQLKRPSS STTTELMLMD SSSTCDALVE REHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSSNDK GGLLLNFEDS NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDVVS FQRGAGELSK HRLFIDWRRR PHHENGNNQF MLPHQFSDGR IFPLQSYPTT FSRNYYNNPP HSYYMYGIGN SSASTPYYSF NNNTSVMVNA SHFDHNLMKS TSVEEPRVFN SVPVVQGKVA AKRFRLFGVN MDYPTPSEES SEKGKSSMSF DLDI // ID K4CJX2_SOLLC Unreviewed; 584 AA. AC K4CJX2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g029090.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g029090.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g029090.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g029090.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004244892.1; XM_004244844.3. DR UniGene; Les.24109; -. DR PaxDb; K4CJX2; -. DR EnsemblPlants; Solyc08g029090.2.1; Solyc08g029090.2.1; Solyc08g029090.2. DR GeneID; 101264140; -. DR Gramene; Solyc08g029090.2.1; Solyc08g029090.2.1; Solyc08g029090.2. DR KEGG; sly:101264140; -. DR InParanoid; K4CJX2; -. DR OMA; NKEDSEC; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 482 580 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 482 580 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 584 AA; 66128 MW; B0B745998C031633 CRC64; MPPQFFKIIL SPHASKLNIP DEFVIKYGAD LRDVVFLEVP TGAIWKVELL QNSNGTKYLN NGWNQFKEYY SIAIGYFLLF QYNGNSHFSV CIFDLSASEI EYLSGPNEHE PPVSRPNCLA ERHREKPDVG EDLTYATQKR KKSKRNGHSN EVVDPSTSKV TTTNQHRTVD CRYPLRSKQR KDVKIEKGDV EEGHCNEALD PSTSKVHSKK RTAASLDASN CRYPLRSKQL KEVKVVKGDV EDHCNKIHLV ADPSATKMTT TVRHHEKKTS ASFDTSHCRY PLRNKQLKEV KPGKTNAEKD LLYVAQKAKR KKANNVKLEK GDAEERSKVG DPSASTTTNQ HNEKKTTTSL DASHCRCPLR SKQHKEVKLE QWEAGGNMHN KTPVADSPYC RSQNPSLPAS SPSCQPVRVK LEKPDNLFCA AEKVKGRETN NVKLDTGDLE GNLVAASYKG KYSTASEMTV LGKKKMLPSE TQNRDMYFNP HFTVSMLPAY VSRNFQLEIP ADFFKKRVNE EETIVNLRVS NGRSWRAKLF DIQSNCPKME SSGWRDFVID NNLKEHDTCV FELNDGIEPM LLDVTIFRAT TPVS // ID K4CM78_SOLLC Unreviewed; 499 AA. AC K4CM78; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g068540.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g068540.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g068540.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g068540.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc08g068540.2.1; -. DR PaxDb; K4CM78; -. DR EnsemblPlants; Solyc08g068540.2.1; Solyc08g068540.2.1; Solyc08g068540.2. DR Gramene; Solyc08g068540.2.1; Solyc08g068540.2.1; Solyc08g068540.2. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; K4CM78; -. DR OMA; CILQFDE; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 266 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 266 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 499 AA; 56980 MW; B923DEBC96F51FE7 CRC64; MESCSNSYSA GSFYVIVEPS VMDDRQLRLP DKFVQEHGDE LLDTVKIIVP TDDFWCVGLK KAGKMIWLHD GWQEFMEHHS VNCWYFLLFK YGQTSCFNVH IFDLAATEID YQLRSHGNAK SRDVAQELSH RKDKIVGDKG FTSSIEIVDL LETEQGPESS AKSSELLHRA KRRKIASGKI KITRCYETRS RTNKLHDNGQ LLNAKNLNIS GNGSLTKPVG GKSVRRSIKT PIHSAMATGD TRKSFTSKQR EKSLGRGRYD RRERAQQKIL EKYNVERNYI LNIPVEFVRK YMPKTSELIE LQDTDGNKWK VRCIRRKLRV LLSKGWLNFV TDNSLLVGDV CVFELLKDVQ AVELILKVHM FRNRVEENSK NLHTGSLSEP TLSTGKNCIL QFDESNHTKS SDAFKPLSSD RTNHKTDTEN SFGQQQEKSV VHGSSGNRRK RGRPRDAEAN TDTENSSGQQ EEKSVVHGSL VIVVKEDDQG MQKQTLIQRI HPDSKRRNP // ID K4CPY4_SOLLC Unreviewed; 334 AA. AC K4CPY4; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g083400.2.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g083400.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc08g083400.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g083400.2.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4CPY4; -. DR EnsemblPlants; Solyc08g083400.2.1; Solyc08g083400.2.1; Solyc08g083400.2. DR Gramene; Solyc08g083400.2.1; Solyc08g083400.2.1; Solyc08g083400.2. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; K4CPY4; -. DR OMA; TIEREHM; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000004994; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 37827 MW; E9B9142658C80605 CRC64; MNFFSDGRGF NDQGPFSHPD FSHQQRSTTN SSDMADEVGE SNTIEREHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS STNEKGLLLN FEDTNGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGVG ELGKDRLFID WKRRPNAPDH LHFMTNHHLH NNLYRSNIQY PAAAWDRPLF LQPPDQSHLQ YSLEPAPGSM SQQQQSHGSS PNYYYDTCNF INSRTTVVNG NPCPSGSVVY LRSGSAQVPQ QAGLMQLRGH SNSSTSGRVV EPVVFDSVPV VQGKAAAKRF RTFNDYDTNR PAATEEESFD KGKASMSLNL DLDI // ID K4CQH0_SOLLC Unreviewed; 694 AA. AC K4CQH0; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc09g007810.2.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc09g007810.2.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc09g007810.2.1}; RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004246657.1; XM_004246609.3. DR STRING; 4081.Solyc09g007810.2.1; -. DR PaxDb; K4CQH0; -. DR EnsemblPlants; Solyc09g007810.2.1; Solyc09g007810.2.1; Solyc09g007810.2. DR GeneID; 101246373; -. DR Gramene; Solyc09g007810.2.1; Solyc09g007810.2.1; Solyc09g007810.2. DR KEGG; sly:101246373; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; K4CQH0; -. DR OMA; PEFCVKS; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004994; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 606 686 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 76222 MW; C2BCFEA51C9BF3DC CRC64; MITFMDPKEK VKEVEKCLDS QLWHACAGSM VQMPSISSKV FYFPQGHSEH ASGNVDFRSS IRIPSYIPCK VSAIKYMADP ETDEVFAKIR LIPVGRNEVE FDDDGVVGMN GSDNQDKPSS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG GNCMVPYGGF SSFLREDENK LMRNGNGNNG GNLMNKGKVK AESVIEAANL AASGQPFEVI YYPRASTPEF CVKSSLVKSA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVSDPIR WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPPRKK LRLPQHPDFP LDGHLPMPAF SGNHLLGPNS PFGCLPDNTP AGMQGARHAQ YGLSLSDLHF NKLHSSLFPV GFPPLDQAAA APRRPLNSPM ISKPCNNENI SCLLTMGNSA HSTKKSDIGK APQLVLFGQP ILTEQQISLS CSGDTVSTVR TGNSSSDGNA DKIGNVSDGS GSALNQRGLT ERSPCDTFQS DPNTEIGHCK VFMESEDVGR TLDLSLLGSY EELCRKLANM FGIDNSEMLN HVLYRDTTGS VKQLGDEPFS DFMKTARRLT ILTDSSSDNV GIRE // ID K4CR51_SOLLC Unreviewed; 345 AA. AC K4CR51; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g010230.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc09g010230.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc09g010230.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc09g010230.1.1}; RG EnsemblPlants; RL Submitted (APR-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004246879.2; XM_004246831.3. DR PaxDb; K4CR51; -. DR EnsemblPlants; Solyc09g010230.1.1; Solyc09g010230.1.1; Solyc09g010230.1. DR GeneID; 101257504; -. DR Gramene; Solyc09g010230.1.1; Solyc09g010230.1.1; Solyc09g010230.1. DR KEGG; sly:101257504; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; K4CR51; -. DR OMA; LECEADD; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000004994; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 39113 MW; 3D11BD4EF4C40091 CRC64; MSINHISSET FWWTKKQPPS FPNMFEFNLN NNMNNNSTNE DDELVQNEDK FEEIPRDHLF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLSG SNNSNSNNNN IDGGTEKGLL LSFEDESGKS WRFRYSYWNS SQSYVLTKGW SRFVKEKRLD AGDIVLFDRH RSDTDRLFIG WRRRNIISAP ISTAAVRHNT AAAMTGNIGG GGGGWAHVYY GGHPYPRAGA GLPYQPDCLH AGRGAMQNQT TTSVNNNTRR HVRLFGVNLE CEADDSSWSE PPPTPDGGGS STSSHHQDHG RSQDQASQHY YQYQFQYSKP HVAVSATASS YNNNHHNHKD MNFSRDVNQM RYHQG // ID K4D0Y7_SOLLC Unreviewed; 166 AA. AC K4D0Y7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g053890.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc10g053890.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc10g053890.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc10g053890.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4D0Y7; -. DR EnsemblPlants; Solyc10g053890.1.1; Solyc10g053890.1.1; Solyc10g053890.1. DR Gramene; Solyc10g053890.1.1; Solyc10g053890.1.1; Solyc10g053890.1. DR InParanoid; K4D0Y7; -. DR OMA; QVLCFPP; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000004994; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 166 AA; 19263 MW; 61966FFC29A2BC40 CRC64; MKLLEMMGAF YDNEDGLLIN GKKVISFFKV MILETFLQVL CFPPKIARSV SYLTDLEISF EDSYGRRWMA TVCNYNGSLA IRQGWDKFSA EHDLKVGEFL VFHYVSDDLN FIVQIFGTSG CEKIKFSCNI GKEKPKERTY QEITTTEECQ SGKLFVHKFF RVILFL // ID K4D1U5_SOLLC Unreviewed; 879 AA. AC K4D1U5; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g075030.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc10g075030.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc10g075030.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc10g075030.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4D1U5; -. DR EnsemblPlants; Solyc10g075030.1.1; Solyc10g075030.1.1; Solyc10g075030.1. DR Gramene; Solyc10g075030.1.1; Solyc10g075030.1.1; Solyc10g075030.1. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K4D1U5; -. DR OMA; WRECISC; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000004994; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 423 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 322 423 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 879 AA; 97203 MW; 80787F843FABDFF1 CRC64; MESKICMNGL CGTTSSIEWK KGWPLRSGEF ATLCDKCGNA YEQLLFCDLF HSEDTGWREC ISCGKRLHCG CIASSSLLEL LDSGGINCIS CVRSCQQHAT PNHEKPKAFG TSISNSVGET ASTSLGSQIN GSEPNKREGS DSIDPALLLL HQNDNTNSPI GQIKMEETFH PAGESGSTFS SNLFQASAEF SKNAKLDSYN GYKGVVEIHG STVQTNLSIA LSAPSPNSKL FPTTLDEGDL NKTISSLQQG SRSRNLLPKP PKSASALGPE MNAGIISQIR VARPPVEGRI KNQLLPRYWP RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR KASTVKITQE NRLSAIPKNV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSVNLSS KHFNSGDFSW YLTEKNGGRN ADGAFSPSMP VSERKRSRNI GSKSKRLLID AHDALELKLS WEELQDMLRP PLSVQPTTVT IEDQEFEEYE QPPVLGKRSI FTVRLSGEQE QWAQCDNCFK WRKLPADYLL PPHWTCQDNI SDHSRSSCSI PDDLTPRELE NLFKMDKDFK KQRSAAGQRI TQAHDSSDLD SQANGISIAG DLGEPGPASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP TCTCNVCMTV KRRFKTLMMR KKKRQSEREA ELGQRNQLMW SSKEETEVDS FSRPVKPEVD PSEKERSGSE TLARGHSSYQ LQKLPEITCL PLETYLRQNG LTSLVSEQQG SSGSQGLPQD TRESDLRVQE DLCLASTAQE QEKDVPKENS EPDQTGKDQ // ID K4D3A8_SOLLC Unreviewed; 308 AA. AC K4D3A8; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g083210.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc10g083210.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc10g083210.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc10g083210.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004249426.1; XM_004249378.3. DR PaxDb; K4D3A8; -. DR EnsemblPlants; Solyc10g083210.1.1; Solyc10g083210.1.1; Solyc10g083210.1. DR GeneID; 101254147; -. DR Gramene; Solyc10g083210.1.1; Solyc10g083210.1.1; Solyc10g083210.1. DR KEGG; sly:101254147; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; K4D3A8; -. DR OMA; NLECEVD; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000004994; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 154 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 154 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 35139 MW; FE1B4411D74B4777 CRC64; MSITHFSSQN YFFSEHYNFM EESLRNSSSP PKQNSNQLEE IEIPKEHLFE KPLTPSDVGK LNRLVIPKQN AEKYFPLNDS INDSGEKGFL LSFEDELGKL WKFRYSYWNS SQSYVLTKGW SRFVKEKKLD AGDVVLFERH RVDGDRQFIG WRRKNGAAVA AASATTVAPP GGGGGWGQIH PFPSAAGVPY QTDFLHAGRG VMHNQLTTPN GNNTRRQVRL FGVNLECEVD DSSSWSESST PDGSISSNHH QQSQEYYQSQ AGQHYYQYQV HYSNPHANPP ASSYNNNHHY NTDMDYSRDV NQMRYHQG // ID K4D447_SOLLC Unreviewed; 631 AA. AC K4D447; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc10g086130.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc10g086130.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc10g086130.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc10g086130.1.1; -. DR PaxDb; K4D447; -. DR EnsemblPlants; Solyc10g086130.1.1; Solyc10g086130.1.1; Solyc10g086130.1. DR Gramene; Solyc10g086130.1.1; Solyc10g086130.1.1; Solyc10g086130.1. DR InParanoid; K4D447; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004994; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 631 AA; 70645 MW; E7CB7C9295760CB4 CRC64; MFLQNLLMAD NKSNCFDSRL WQACAGTMVK MPAVDSIVLY FPQGHAEHAG VNVEFRSDVK IPSYIPCRVS SIKYMAERET DEVFAKIRLT PVRLSEFFET PEEEGMVKIG SDNSRKPLSF AKTLTQSDAN NGGGFSVPKN CADTIFPTLD YNVNPPVQTL SATDIHGKSW QFRHIYRGTP ERHLLTTGWS TFVNQKKLVA GDSIVFLRNE NDKISIGIRR IKKKSVAMEP ETSPWWFPSV GNLTIPRGGF SAFLRDDHNT NSSWSLINRG NVKAESVIEA TKLATNGQPF EVIFYPQSTT PEFFVKASRV KAALQIPWCS GMRFKMPFET EDLVISWFMG TISSVQANDP SQWPDSPWRM LQVTWDEPNL LHNVMCVNPW LVEPVSNMPT INFNPYTPPL KKLRLSHTSD FPLNGHLPMS GFPNNHLEFS IDPPMSSFPI HHLLRPYGCP PNNTPVGMQG ARHAPYNLSL PDIHTNNLLS SLSPVGFPSL HHVVASPNTS NNTMIPKPSR NAGISSLLTL GSSTQTNKKF DSEKTTQFVL FGQPIVIEQQ TSQSNSRISV SPRHATNSFS DGNEYKKENT SDSSDTSFVH NSVPDYLPSK SFRSEENVEI GHSKVFIESE DIGQTKQLGE W // ID K4D6F2_SOLLC Unreviewed; 342 AA. AC K4D6F2; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc11g013480.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc11g013480.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc11g013480.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4081.Solyc11g013480.1.1; -. DR PaxDb; K4D6F2; -. DR EnsemblPlants; Solyc11g013480.1.1; Solyc11g013480.1.1; Solyc11g013480.1. DR Gramene; Solyc11g013480.1.1; Solyc11g013480.1.1; Solyc11g013480.1. DR InParanoid; K4D6F2; -. DR OMA; FMRRTAN; -. DR OrthoDB; EOG093614IP; -. DR Proteomes; UP000004994; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 38289 MW; 1EAC2E95A184ED37 CRC64; MQAPTVADRE VDPIVWRAIA GNSVKIPPVG TRVYYFPQGH AEHATFTSPA VMSPGMPAFI LCRVLSVRFL AESDTDEVYA RIFLHPISQS EVDEVTMREE EVVEDEIVSF VKILTPSDAN NGGGFSVPRF CADSIYPRLD FEAEPPVQNL SIRDIKGVAW EFRHIYRGTP RRHLLTTGWS KFVNSKQLVA GDSAVFMRRT ANNQLYVGVR RAIRRNDDSQ KWTSSFLMRE HINNGGSPDV SWGIRKGRMT MEAVAAVAEK AARGVPFEVS CYPRDAWAGF VVKAQEVQMA LNMPWTVGMR VKMAVEAEDS SRTACYQGTV SSVILNESGP WRGSPWRMLQ II // ID K4D8K9_SOLLC Unreviewed; 297 AA. AC K4D8K9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc11g045450.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc11g045450.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc11g045450.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc11g045450.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010313117.1; XM_010314815.2. DR PaxDb; K4D8K9; -. DR EnsemblPlants; Solyc11g045450.1.1; Solyc11g045450.1.1; Solyc11g045450.1. DR GeneID; 104644667; -. DR Gramene; Solyc11g045450.1.1; Solyc11g045450.1.1; Solyc11g045450.1. DR KEGG; sly:104644667; -. DR InParanoid; K4D8K9; -. DR OMA; IVIKKTH; -. DR OrthoDB; EOG093616YP; -. DR Proteomes; UP000004994; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 186 211 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 297 AA; 34539 MW; 63DCB8687DE1BD75 CRC64; MSHPKFIQII CSLDELYRLR IPPVFAESHC KDMLNHVFLQ APHGKAWEVE VEHSQGQIWL AKGWKEFSNL YAISVKQLLM FTYNARDLLD VTIFGMDTVE IKYPIQDTES YDSMDIFYHS TENLSHGPLV AKIIQKRQEG EEKDDIRLNL QTDANVIEGE EEYIPVNLQI NANIIEEEEE DIPVNLQTSA NELAEEESQD QEVEEDNHRS EEVGQKNNNR HSVVNLADDT PYFEIVIKKT HTTYLTIPIR FANRTNIVNM KNMRLVNGEG IRWGVEIEYT KCRAIIKKGW TEDGEWK // ID K4DAA6_SOLLC Unreviewed; 699 AA. AC K4DAA6; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc11g069500.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc11g069500.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc11g069500.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; NP_001234796.2; NM_001247867.2. DR RefSeq; XP_010313187.1; XM_010314885.2. DR UniGene; Les.7515; -. DR STRING; 4081.Solyc11g069500.1.1; -. DR PaxDb; K4DAA6; -. DR EnsemblPlants; Solyc11g069500.1.1; Solyc11g069500.1.1; Solyc11g069500.1. DR GeneID; 100529137; -. DR Gramene; Solyc11g069500.1.1; Solyc11g069500.1.1; Solyc11g069500.1. DR KEGG; sly:100529137; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; K4DAA6; -. DR OMA; RNDNISC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000004994; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 668 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 76990 MW; CE5C694F37CD352E CRC64; MKEVLEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLMNVDFSA LPRSPALILC RVAAVKFLAD PETDEVYAKI RVVPVGNKGN DFDDDDDILG SNESGTAEKP NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVTAKDVHG ESWKFRHIYR GTPRRHLLTT GWSSFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPEAPSGWNS GAGNYGGFSA FLREEMSKNG NLTSPTRSLR GKGRVRPESV VEAAYLASSG QPFEVVYYPR ANTPEFCVRA SSVNAAMRIQ WCSGMRFKMA FETEDSSRIS WFMGTISSIQ LADPIRWPNS PWRLLQVAWD EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFSLDSQFQ LPSFSGNPLR SSSPFCCLSD NITAGIQGAR HAQFGVPLLD LHLSNKLPSG LLPPSFQRVA ANSQLPNVIN KCQNDRNDNI SCLLTMGTSS KTLDKNDSVN TPRFLLFGQP ILTEQQISNG CSVSAPQVVQ TGKDLGRIQP INEKHPSEQK GSIQDNLSSA TFFWNRGYHA AELGVLNTGH CKVFLESEDV GRTLDLSVMG SYEELYKRLA NMFGLERPDM LTRVLYHDAT GAVKHTGDEP FSDFVKSAKR LTILMNSSSN IKRKWLTGLA TAERGLDSSN QAGPLSIFA // ID K4DBH1_SOLLC Unreviewed; 195 AA. AC K4DBH1; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc12g006340.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc12g006340.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc12g006340.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc12g006340.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_010313687.1; XM_010315385.2. DR PaxDb; K4DBH1; -. DR EnsemblPlants; Solyc12g006340.1.1; Solyc12g006340.1.1; Solyc12g006340.1. DR GeneID; 101259615; -. DR Gramene; Solyc12g006340.1.1; Solyc12g006340.1.1; Solyc12g006340.1. DR InParanoid; K4DBH1; -. DR OMA; PTENENQ; -. DR Proteomes; UP000004994; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 185 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 195 AA; 21713 MW; 741CC8E0FE83344E CRC64; MKVSTSGFNS QPEEGEKKSL NSELWHACAG PLVSLPHVGT RVVYFPQGHS EQVAASTNKE LNGHIPSYPG LPPQLICQLH NVTMDADVET DEVYAQMTLQ PLTPQEQKDV CLLPAELGTP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPVQELIG KDLHGNEWKF RHIFRGEFLF RELIE // ID K4DBR7_SOLLC Unreviewed; 235 AA. AC K4DBR7; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc12g007300.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc12g007300.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc12g007300.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc12g007300.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_004251622.1; XM_004251574.3. DR UniGene; Les.8021; -. DR PaxDb; K4DBR7; -. DR EnsemblPlants; Solyc12g007300.1.1; Solyc12g007300.1.1; Solyc12g007300.1. DR GeneID; 101254974; -. DR Gramene; Solyc12g007300.1.1; Solyc12g007300.1.1; Solyc12g007300.1. DR KEGG; sly:101254974; -. DR eggNOG; ENOG410JFCN; Eukaryota. DR eggNOG; ENOG4111DJK; LUCA. DR InParanoid; K4DBR7; -. DR OMA; ELCFALT; -. DR OrthoDB; EOG09360NZK; -. DR Proteomes; UP000004994; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 235 AA; 26593 MW; 6F68CD62C4DB64E9 CRC64; MVKLEKEDIE AALLLSWLKY VPVFPKKEEK SKRKHRRFIK NETPEIQIPK RVKNSPSASG FEVYGAGNPK RVRLSSNSNG GQAASSSRNS NPVPKRGRVS PSNLPGSLPK FPPIENLTTL IGQCSNPFVK QLTNSDVNGH QGRFLLSNEY VRNQLLPLLN EKSEDLTTGI SVKTFDPMGK YCNMKFKTWG NHKTYLLLGS WKQFVQEHGL KVSDCVTGWM FRHNRTGELC FALTW // ID ARF2B_SOLLC Reviewed; 828 AA. AC K4DF01; DT 05-JUL-2017, integrated into UniProtKB/Swiss-Prot. DT 28-NOV-2012, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor 2B {ECO:0000303|PubMed:26716451, ECO:0000303|PubMed:26959229}; DE Short=SlARF2B {ECO:0000303|PubMed:26716451}; GN Name=ARF2B {ECO:0000303|PubMed:26716451, ECO:0000303|PubMed:26959229}; GN Synonyms=ARF11 {ECO:0000303|PubMed:21735233}; GN OrderedLocusNames=Solyc12g042070 {ECO:0000305|PubMed:26716451}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000312|EnsemblPlants:Solyc12g042070.1.1}; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Heinz 1706 {ECO:0000312|EMBL:CM001075}; RG Tomato Genome Sequencing Consortium; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. RN [2] RP TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND PHYLOGENETIC ANALYSIS. RX PubMed=21735233; DOI=10.1007/s00299-011-1113-z; RA Wu J., Wang F., Cheng L., Kong F., Peng Z., Liu S., Yu X., Lu G.; RT "Identification, isolation and expression analysis of auxin response RT factor (ARF) genes in Solanum lycopersicum."; RL Plant Cell Rep. 30:2059-2073(2011). RN [3] RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION, AND RP DISRUPTION PHENOTYPE. RX PubMed=26716451; DOI=10.1371/journal.pgen.1005649; RA Hao Y., Hu G., Breitel D., Liu M., Mila I., Frasse P., Fu Y., RA Aharoni A., Bouzayen M., Zouine M.; RT "Auxin response factor SlARF2 is an essential component of the RT regulatory mechanism controlling fruit ripening in tomato."; RL PLoS Genet. 11:E1005649-E1005649(2015). RN [4] RP FUNCTION, AND DISRUPTION PHENOTYPE. RX PubMed=26959229; DOI=10.1371/journal.pgen.1005903; RA Breitel D.A., Chappell-Maor L., Meir S., Panizel I., Puig C.P., RA Hao Y., Yifhar T., Yasuor H., Zouine M., Bouzayen M., RA Granell Richart A., Rogachev I., Aharoni A.; RT "AUXIN RESPONSE FACTOR 2 intersects hormonal signals in the regulation RT of tomato fruit ripening."; RL PLoS Genet. 12:E1005903-E1005903(2016). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that binds specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs) (By CC similarity). Could act as transcriptional activator or repressor. CC Involved in the control of fruit ripening process. Regulates CC expression of a number of ripening regulators, transcription CC factors, and ethylene biosynthesis and signaling components CC (PubMed:26716451, PubMed:26959229). May act as a transcriptional CC repressor of auxin-responsive genes (PubMed:26716451). CC {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, CC ECO:0000269|PubMed:26959229}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000255|RuleBase:RU004561, ECO:0000255|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000255|RuleBase:RU004561, CC ECO:0000255|SAAS:SAAS00552270, ECO:0000269|PubMed:26716451}. CC -!- TISSUE SPECIFICITY: Expressed in root, leaf and stem CC (PubMed:26716451, PubMed:21735233). Also expressed in flower and CC fruit (PubMed:26716451). Expressed in flower buds about three days CC before opening including stamen, petal and sepal with the highest CC in ovary (PubMed:21735233). {ECO:0000269|PubMed:21735233, CC ECO:0000269|PubMed:26716451}. CC -!- DEVELOPMENTAL STAGE: Expression increases during floral CC development. Expressed during ovary development with the highest CC expression on the third day after the flower fully opened. CC {ECO:0000269|PubMed:21735233}. CC -!- INDUCTION: By tomato fruit ripening. Expression is up-regulated by CC plant hormone auxin in tomato fruits. CC {ECO:0000269|PubMed:26716451}. CC -!- DISRUPTION PHENOTYPE: Simultaneous RNAi-mediated silencing of both CC ARF2A and ARF2B results in severe defects in tomato fruit ripening CC process (PubMed:26959229, PubMed:26716451). Plants form triple CC cotyledons and have enhanced root branching. Tomatoes have reduced CC pigment accumulation, enhanced fruit firmness, low climacteric CC ethylene production and inability to ripen upon exogenous CC application of ethylene (PubMed:26716451). The fruits are either CC parthenocarpic or contain only a few seeds, and the time from CC anthesis to breaker (Br) developmental stage is significantly CC extended compared to wild type fruit (PubMed:26959229). Altered CC expression of ethylene biosynthesis, signaling and ethylene CC response factor (ERF) genes and genes involved in the carotenoid CC pathway and ripening-related cell wall metabolism. Up-regulates CC auxin-responsive genes (PubMed:26716451). Down-regulated CC expression levels of ripening regulators, including RIN, AP2a, CC NOR, TAGL1, ETR3, ERF1 and CNR at the red (R) fruit stage. CC Expression levels of hormones such as abscisates, cytokinins and CC salicyclic acid are altered, and levels of carotenoids phytoene, CC phytofluene and lycopene are reduced in red fruits. Gibberellic CC acid (GA) and auxin expression levels are unchanged. Compounds CC normally reduced upon ripening show higher levels than wild type CC fruit as a result of simultaneous silencing of ARF2A and ARF2B CC (PubMed:26959229). {ECO:0000269|PubMed:26716451, CC ECO:0000269|PubMed:26959229}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000255|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM001075; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; XP_004252281.1; XM_004252233.3. DR UniGene; Les.776; -. DR STRING; 4081.Solyc12g042070.1.1; -. DR PaxDb; K4DF01; -. DR EnsemblPlants; Solyc12g042070.1.1; Solyc12g042070.1.1; Solyc12g042070.1. DR GeneID; 101249712; -. DR Gramene; Solyc12g042070.1.1; Solyc12g042070.1.1; Solyc12g042070.1. DR KEGG; sly:101249712; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; K4DF01; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004994; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; Developmental protein; KW DNA-binding; Fruit ripening; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 828 Auxin response factor 2B. FT /FTId=PRO_0000441019. FT DOMAIN 703 786 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 128 230 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 828 AA; 92468 MW; F152847D499EF9EA CRC64; MATSENCRNA AGAGKVDAEK ALYTELWRAC AGPLVTVPCE GELVFYFPQG HIEQVEASTN QASDQQMPVY NLPSKILCRV INVLLKAEPD TDEVYAQVTL LPEPNQDENV VSKEPMPSPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHANEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV ISSHSMHLGV LATAWHAIQT KTLFTVYYKP RTSPADFIVP YDQYMESLKN NYSIGMRFKM RFEGEEAPEQ RFTGTIVGIE NADLKRWPES KWRCLKVRWD ETSAIPRPDR VSPWKVEPAL SPPALNPLPI PRQKRPRSNV LPSSPDSSVL TREGSSKVVV DTSQASGFSR VLQGQEISTL RGNFVENNES DSSEKPPIWQ PLLDDEKADV HSASRKCISD KRLPLGRPES SFTDLLSGFG GQSSSSHGFH SPTGGQTAPA SWVKRQALDK ETDFSLLAKQ WSLVSSGLSL NLMESGLKGA DTLYQMRGTS RLNCFNEYPT FPGHRPDNQQ GNWLMPPSVL PYIQMSAHSG EIMPKPMASP QPEAMKPKEG NCKLFGIPLV SKCATIDPVM LRKNSPIHST SNMHFGIHPH QFPIIESDQR SEQSKGSKLP DDGFIVHDQE EQFQTSHPGT RDREGKGLVH STRSCTKVHK QGTALGRSVD LAKFNNYEEL IAELDHIFDF NGELKARNKN WLVVYTDDEG DMMLVGDDPW EFCGMVRKIF IYTKDEVQRM NPGTLNSKGE DNSSVAEGSD AKEVKNLQLH IDSSPEDS // ID K4DHL9_SOLLC Unreviewed; 209 AA. AC K4DHL9; DT 28-NOV-2012, integrated into UniProtKB/TrEMBL. DT 28-NOV-2012, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc12g098460.1.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc12g098460.1.1, ECO:0000313|Proteomes:UP000004994}; RN [1] {ECO:0000313|EnsemblPlants:Solyc12g098460.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc12g098460.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PaxDb; K4DHL9; -. DR EnsemblPlants; Solyc12g098460.1.1; Solyc12g098460.1.1; Solyc12g098460.1. DR Gramene; Solyc12g098460.1.1; Solyc12g098460.1.1; Solyc12g098460.1. DR InParanoid; K4DHL9; -. DR OMA; SHIQHNE; -. DR OrthoDB; EOG093619BR; -. DR Proteomes; UP000004994; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 209 AA; 23499 MW; 71F43D7CDD878D94 CRC64; MEGQSNNVSD SRLMKGVLDE QNSQPTMGNS ESSLQQLFHK VLTPSDVGNK TFVIPRRYAL KYFSHIQHNE EVDFYDSSTQ SWRFKLFYCQ SSKKFTFTRG WHKFVQAKNL KAGDTIIFNL CEIKNGTHEN SNTFVIDVVK NDEGLSMDLA LNHNDVAVDV DAAPNDEGLP MDLALNHNDV AVDVDAAPTP VLLFGKQIGW TKSKRGNEV // ID K7K114_SOYBN Unreviewed; 1068 AA. AC K7K114; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100817780 {ECO:0000313|EnsemblPlants:GLYMA01G00510.2}; GN ORFNames=GLYMA_01G002100 {ECO:0000313|EMBL:KRH74146.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G00510.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G00510.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G00510.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH74146.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH74146.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G00510.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G00510.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH74146.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH74146.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH74146.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA01G00510.2; GLYMA01G00510.2; GLYMA01G00510. DR Gramene; GLYMA01G00510.2; GLYMA01G00510.2; GLYMA01G00510. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 992 1068 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1068 AA; 118135 MW; EF4FBE4FFB9C5517 CRC64; MKKKSSIKAE LWHACAGPLV KLPPSGTHVI YFPQGHSEQV SASLNRDVHS QIPNYPNLPS KLLCLLHTLT LHADPQTDQV YAQITLQPLP SFDKDALLRS DLALESTKPP PDFFCKQLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH DTVWKFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKSVYSHQPS LGMRFRMMFE TEDSGTRRHM GTVTGISDLD PVQWKNSQWR NLQVGWDEST AGEKRSRVSI WEIEPVTAPF FICPPPFFRS KRPRQPGMPD DELSDFDNIF KQTMPWPGDD MCVKDPQGLP GLNLAQWMNM QQNPALASSL QPNYAPSLSG SILQNIPGPD ISHQLGFSAP QISQSNNVAL NTQRLLQTAP QLDHLQKLPS TSSTLGTVLP PQQQLGDITQ QSRQNLANQT IPQGQVQAQL VHPQNIVQTN NILQQQQPSS QNHQLHRSLS QNPSQQQQQT IIGQNQHQNL IQSPMPDHVQ QLQMSDDQIQ LQLLQKLQQQ KQTLLAQQTA LQHSTQLTQI QDRQRQLLDK THNLSRALTP GQVREIPPIF QNSLPKANSI SNPITKANCQ SNIQFYQQPK LQQQQPGLLS EMPGHTALHP TTTTNQLSAA GSSILTGAGG AGGAGQSVIT DEVLSCSTSP SANNCTNALP QLINSRFQRS TLVGDDMAQS AATILSSSAL ETTSSNANML KDLQPKSEVK PSLNISKIQN QGHFAPQTYL NGNAAHTDCL DTSSSTTSVC LSQSDAHMHQ NNNPLSYNPQ SLLFRDNNQD GEVQADARSN IPYANNIDSQ MGMPLNPDSL STKGTLRLGK DLSNNFSSEG MLGNYEINRD AQQEPSSSMV SQTFGVPDMA FNSIDSTIDD SNFLNSGPWA PPPAPPLPPL PPLPPAQFQR MRTYTKVYKR GAVGRSIDIT RYSGYEELKQ DLARRFGIEG QLEDRQRIGW KLVYVDHESD VLLLGDDPWE VDAFSSLG // ID K7K2E7_SOYBN Unreviewed; 301 AA. AC K7K2E7; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G11755.1}; GN Name=LOC100779136 {ECO:0000313|EnsemblPlants:GLYMA01G11755.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G11755.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G11755.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G11755.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA01G11755.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G11755.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA01G11755.1; GLYMA01G11755.1; GLYMA01G11755. DR Gramene; GLYMA01G11755.1; GLYMA01G11755.1; GLYMA01G11755. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K7K2E7; -. DR OMA; ELSSGWK; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 301 AA; 35085 MW; 7F9C0DEDB6251FFA CRC64; MHFFRIIIAP SLQEGKLMLP NKFVEKYGEG LPNTLFLKAP NGAEWKLTLE KRDDKMWFQK GWREFAKHHS LDHGHLLLFR YQRTSHFQVH IFDGSGLEIE YPLGKVEGKM TSNYQKNKRP NGEKLEYEFL QPCMGSRKCV KVDNTMKPKL GCSACASYRQ KGQRKTKMTT TEHVTAFDRA SYFRPCNPSF LVSQTYLTHR NFPSKFCKKH IDLRKNRGDI NLEVLNGRVW HARYRIRTAE TRRRFELSSG WKTFAEDNNL KVGDVCTFEL IPATKLTFQV HIFRVSANSN CSTSQGSIDI F // ID K7K310_SOYBN Unreviewed; 692 AA. AC K7K310; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100803911 {ECO:0000313|EnsemblPlants:GLYMA01G25270.4}; GN ORFNames=GLYMA_01G103500 {ECO:0000313|EMBL:KRH75716.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G25270.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G25270.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G25270.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH75716.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH75716.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G25270.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G25270.4}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH75716.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH75716.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH75716.1; -; Genomic_DNA. DR EMBL; CM000834; KRH75717.1; -; Genomic_DNA. DR RefSeq; XP_006573317.1; XM_006573254.2. DR UniGene; Gma.61402; -. DR STRING; 3847.GLYMA01G25270.4; -. DR EnsemblPlants; GLYMA01G25270.4; GLYMA01G25270.4; GLYMA01G25270. DR EnsemblPlants; GLYMA01G25270.5; GLYMA01G25270.5; GLYMA01G25270. DR GeneID; 100803911; -. DR Gramene; GLYMA01G25270.4; GLYMA01G25270.4; GLYMA01G25270. DR Gramene; GLYMA01G25270.5; GLYMA01G25270.5; GLYMA01G25270. DR KEGG; gmx:100803911; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR KO; K14486; -. DR OMA; PEITASC; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 581 662 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 692 AA; 76962 MW; 8D2513FDCCECA448 CRC64; MLSRGAHGEV VGSGESGEDE LYEQQWKACA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESSQDEPTN ADPCTAEPPR APVHSFSKVL TASDTSTHGG FSVLRKHATE CLPVLDMSQP TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIIGVNKY LEAMDKKFSV GMRFKMRFEG DDSAETDKRF SGTIVGVEDI SPHWVNSKWR SLKVQWDEPA AVPRPDRVSP WEIEPFVASA STPSVQPTMV KTKRPRPPSE TPDVDTTSVA SVFWDAGLQQ ADMAQKNVLA ESKWNDNTGT WHHMQTDMNS KSNSGNTMLR NQTEGSWLSS PHSSCPSHLF QDVTDDSKIV SAWPVSKPHS SKLNNDHVLD QVDKESKVET ATSYRLFGID LIDPSRNSPS VEKASAQAVN VPKVTTEGCT STLSRTDAGH KSDVSMASSM ERKQEQLQVS PKDTQSKQIC RSRTKVQMQG VAVGRAVDLT MLDGYGQLIN ELEDMFNIKG QLQHRNKWEI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVKKMSC GSKLPISSVE DGTVISSDTT ET // ID K7K350_SOYBN Unreviewed; 225 AA. AC K7K350; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G27145.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G27145.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G27145.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G27145.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA01G27145.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G27145.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA01G27145.1; GLYMA01G27145.1; GLYMA01G27145. DR Gramene; GLYMA01G27145.1; GLYMA01G27145.1; GLYMA01G27145. DR InParanoid; K7K350; -. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 163 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 163 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 25839 MW; DC665B64F4EC94C5 CRC64; MGGEVDAHIP NYPSLPPQLI CQLPNMTMHA DAKTDEVYSQ MTLQPLNLPA ELVTPSKQPT NYFYKTLTIS GASTHGGFSV PRRAVEKVFP PLDFSQQPPA QELIARDMHG NEWKFRHIFR GQPKRHLLTT GWSVFVAAKR LVVGDSMLFI WQVILLFPSP QKRILKIKTW LWLGLQVGWD ESTTGDRQPR VSLWEIEPLT TFPMYPSRFP LRLQWPWPLG LPSFH // ID K7K3M0_SOYBN Unreviewed; 908 AA. AC K7K3M0; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH76125.1, ECO:0000313|EnsemblPlants:GLYMA01G32810.2}; GN Name=LOC100789085 {ECO:0000313|EnsemblPlants:GLYMA01G32810.2}; GN ORFNames=GLYMA_01G133000 {ECO:0000313|EMBL:KRH76125.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G32810.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G32810.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G32810.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH76125.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH76125.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G32810.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G32810.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH76125.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH76125.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH76125.1; -; Genomic_DNA. DR RefSeq; XP_014630512.1; XM_014775026.1. DR STRING; 3847.GLYMA01G32810.2; -. DR EnsemblPlants; GLYMA01G32810.2; GLYMA01G32810.2; GLYMA01G32810. DR GeneID; 100789085; -. DR Gramene; GLYMA01G32810.2; GLYMA01G32810.2; GLYMA01G32810. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K7K3M0; -. DR OMA; WRECISC; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 423 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 637 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 322 423 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 101007 MW; F5DFAA8DB0B9C8E2 CRC64; MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CGRNSGPQPI ASNEKPNGSG TSKVQNVSTQ QQCTSLANQL TVRGMQVGHY AENDELQCWF KTHNVETDGP FAEMKPEILP SVGELGNTLI SQFHCESNGS SKASKAENCK PETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE QSKTSPLLLG SRSHHLLPKP ARSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR KATNSTAVQE TLPSNMPNGS HSSETSYSGV YVNLPILSGY SGLLQLQKGC SETHLNALSK KWNSAGGDMS WHNIDMPESR KRDELPLPPV MVPEKKRTRN IGSKSKRLLI DSQDALELKL TWEEAQDMLR PPPTVKPSIV MIEDHVFEEY EEPPVFGKRS IFVVRSTGVN EQWTQCDSCS KWRKLPVDVL TPPKWTCVEN LWDQSRCSCA APNELNPREL DNLLRLNKEF KKQRLAASQR LALEHESSGL DALANAAILG DDASDSGRTS VVSTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIAQRNQLS WRTKDESEVD STLRHLTPVD RLENEVRVQN ELDSRSQNHA VAEAAKGQLD LNCQPDREDV QAWPNNLSMT SLLEEANLPL ETYLKRNGLS SLISEQQTNS ASNVQAQTTN DSEGKHNEDC GTALVIHERE SSPEENSGQD REQNNSLS // ID K7K3M1_SOYBN Unreviewed; 872 AA. AC K7K3M1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH76124.1, ECO:0000313|EnsemblPlants:GLYMA01G32810.3}; GN Name=LOC100789085 {ECO:0000313|EnsemblPlants:GLYMA01G32810.3}; GN ORFNames=GLYMA_01G133000 {ECO:0000313|EMBL:KRH76124.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G32810.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G32810.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G32810.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH76124.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH76124.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G32810.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G32810.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH76124.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH76124.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH76124.1; -; Genomic_DNA. DR RefSeq; XP_006573404.1; XM_006573341.2. DR EnsemblPlants; GLYMA01G32810.3; GLYMA01G32810.3; GLYMA01G32810. DR GeneID; 100789085; -. DR Gramene; GLYMA01G32810.3; GLYMA01G32810.3; GLYMA01G32810. DR KEGG; gmx:100789085; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 423 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 601 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 322 423 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 872 AA; 97224 MW; E04A44BE340816DD CRC64; MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CGRNSGPQPI ASNEKPNGSG TSKVQNVSTQ QQCTSLANQL TVRGMQVGHY AENDELQCWF KTHNVETDGP FAEMKPEILP SVGELGNTLI SQFHCESNGS SKASKAENCK PETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE QSKTSPLLLG SRSHHLLPKP ARSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR KATNSTAVQL QKGCSETHLN ALSKKWNSAG GDMSWHNIDM PESRKRDELP LPPVMVPEKK RTRNIGSKSK RLLIDSQDAL ELKLTWEEAQ DMLRPPPTVK PSIVMIEDHV FEEYEEPPVF GKRSIFVVRS TGVNEQWTQC DSCSKWRKLP VDVLTPPKWT CVENLWDQSR CSCAAPNELN PRELDNLLRL NKEFKKQRLA ASQRLALEHE SSGLDALANA AILGDDASDS GRTSVVSTTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NQLSWRTKDE SEVDSTLRHL TPVDRLENEV RVQNELDSRS QNHAVAEAAK GQLDLNCQPD REDVQAWPNN LSMTSLLEEA NLPLETYLKR NGLSSLISEQ QTNSASNVQA QTTNDSEGKH NEDCGTALVI HERESSPEEN SGQDREQNNS LS // ID K7K5N2_SOYBN Unreviewed; 361 AA. AC K7K5N2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH77968.1, ECO:0000313|EnsemblPlants:GLYMA01G45623.1}; GN Name=LOC100782165 {ECO:0000313|EnsemblPlants:GLYMA01G45623.1}; GN ORFNames=GLYMA_01G244800 {ECO:0000313|EMBL:KRH77968.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G45623.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G45623.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G45623.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH77968.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH77968.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G45623.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G45623.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH77968.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH77968.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH77968.1; -; Genomic_DNA. DR RefSeq; XP_003516780.1; XM_003516732.3. DR EnsemblPlants; GLYMA01G45623.1; GLYMA01G45623.1; GLYMA01G45623. DR GeneID; 100782165; -. DR Gramene; GLYMA01G45623.1; GLYMA01G45623.1; GLYMA01G45623. DR KEGG; gmx:100782165; -. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR InParanoid; K7K5N2; -. DR OMA; MITETIN; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 304 338 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 361 AA; 40819 MW; 1763033E54603E55 CRC64; MGIVIDAPPC NTQAYQRAKE VQANLSPQFP TFLKSMLPSH VAGGFWLGLP KKFCNLYMPK LDTTIALEDE TGQLYETKYL AQKAGLSAGW RGFSIAHNLL EMDVLIFHLV QPSKFRVYII RSQESDELDG ALVLLKSDGC RKQSDDANDH KNSGMIFCAN VSHPDQVENT SEDFDSGIRF SESVVSFKQV TGVENFRIVV NGLVIDSELS KYIRNKYYEL CCSQRSFLHD HLLEGLNTKL AAGIISETIN IADAIKASNL TTSPDSLVIW DKTLKAFETM GMNVSFLLIR LDQLMKLALK LKRYKEVTLE RDHAAEELKA LEAKLLEVKQ TINRLDQEND IQHMHPERLE TMFQELADAP W // ID K7K5N3_SOYBN Unreviewed; 342 AA. AC K7K5N3; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH77967.1, ECO:0000313|EnsemblPlants:GLYMA01G45623.2}; GN Name=LOC100782165 {ECO:0000313|EnsemblPlants:GLYMA01G45623.2}; GN ORFNames=GLYMA_01G244800 {ECO:0000313|EMBL:KRH77967.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA01G45623.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA01G45623.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G45623.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH77967.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH77967.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA01G45623.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA01G45623.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH77967.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH77967.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000834; KRH77967.1; -; Genomic_DNA. DR RefSeq; XP_006573914.1; XM_006573851.2. DR EnsemblPlants; GLYMA01G45623.2; GLYMA01G45623.2; GLYMA01G45623. DR GeneID; 100782165; -. DR Gramene; GLYMA01G45623.2; GLYMA01G45623.2; GLYMA01G45623. DR Proteomes; UP000008827; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 285 319 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 342 AA; 38780 MW; B4F595DF70D3B201 CRC64; MGIVIDAPPC NTQAYQRAKE VQANLSPQFP TFLKSMLPSH VAGGFWLGLP KKFCNLYMPK LDTTIALEDE TGQLYETKYL AQKAGLSAGW RGFSIAHNLL EMDVLIFHLV QPSKFRVYII RSQESDELDG ALVLLKSDGC RKQSDDQVEN TSEDFDSGIR FSESVVSFKQ VTGVENFRIV VNGLVIDSEL SKYIRNKYYE LCCSQRSFLH DHLLEGLNTK LAAGIISETI NIADAIKASN LTTSPDSLVI WDKTLKAFET MGMNVSFLLI RLDQLMKLAL KLKRYKEVTL ERDHAAEELK ALEAKLLEVK QTINRLDQEN DIQHMHPERL ETMFQELADA PW // ID K7KAC2_SOYBN Unreviewed; 573 AA. AC K7KAC2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40280.2}; GN Name=LOC100782543 {ECO:0000313|EnsemblPlants:GLYMA02G40280.2}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40280.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40280.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40280.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA02G40280.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40280.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA02G40280.2; GLYMA02G40280.2; GLYMA02G40280. DR Gramene; GLYMA02G40280.2; GLYMA02G40280.2; GLYMA02G40280. DR InParanoid; K7KAC2; -. DR OMA; CASAHEE; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 317 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 573 AA; 63977 MW; C26FFF96259A9351 CRC64; MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLHQTGWREC SFCNKTLHCG CIASSSMFEY LDYGGIGCVT CVKTSQLNLI RDTENTIGSV RSIKNNASDR HTEHMDSRLL VDGAGKGNLM QLRRHVEASE SSRWQRAERD GIDSCIGPNR QDDRRFSNVM KLSGHSLTFT TLDNNRPTWE TQTMHKSSSQ NMSLGTSSGN SVLPSALDIA ERRLEGKTSF CPFHQGQRLF SISKPLMDGI AINLEASKGV ISQERVARPP ANGKTKNLLL SRYWPRITDQ ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK GNDWTFQFRF WPNNNSRMYV LEGVTPCMQA MQLNAGDTVM FSRIDPGGKF VMGSRRASDS IDTQEASTFS HSNDFATKEA TFSGATANLH SGNSYPDLLR TTKGNGEPYL NRYSEHLRFS TETANCLQTE NDMELRVTWE EAQDLLHPPP CVKPSVETIE DKEFEEFEEP PVFGKGTTIN DHPSGSLSSA SEEMSSRELE NILVTSKGDD LTL // ID K7KAC9_SOYBN Unreviewed; 407 AA. AC K7KAC9; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH72851.1, ECO:0000313|EnsemblPlants:GLYMA02G40400.2}; GN Name=LOC100786265 {ECO:0000313|EnsemblPlants:GLYMA02G40400.2}; GN ORFNames=GLYMA_02G237500 {ECO:0000313|EMBL:KRH72851.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40400.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40400.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH72851.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72851.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G40400.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH72851.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72851.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH72851.1; -; Genomic_DNA. DR EMBL; CM000835; KRH72852.1; -; Genomic_DNA. DR RefSeq; XP_014624887.1; XM_014769401.1. DR RefSeq; XP_014624889.1; XM_014769403.1. DR EnsemblPlants; GLYMA02G40400.2; GLYMA02G40400.2; GLYMA02G40400. DR EnsemblPlants; GLYMA02G40400.3; GLYMA02G40400.3; GLYMA02G40400. DR GeneID; 100786265; -. DR Gramene; GLYMA02G40400.2; GLYMA02G40400.2; GLYMA02G40400. DR Gramene; GLYMA02G40400.3; GLYMA02G40400.3; GLYMA02G40400. DR KEGG; gmx:100786265; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR OMA; DASSIAM; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 407 AA; 46060 MW; 5BE6EA226BB2A3D7 CRC64; MAKGCSNNTY EEARKQRLEE NKKRFEDLGI SRISKNLTEI ASSAKKKLRH VPKQKTKKTN VEVEPRRSSR VRNPVRSYRE DVNIDLPPLR KRSRSSSSSW GSYIARPLDE IKEATKEERL CALEAAEAIQ INLNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEHLPKTL HDMVLEDENG SEYEAVYIGN RAGLSGGWRA FALDHKLDDG DALVFELIEA SRFKIYIVRA FPDSVEEKGN NILEEEGNVR ATKAPKAACN LESECKTKKP KQAAVYETKE SESSQEYLLD SSIDNEVKPQ GVNPTNKETK FSQKNTPKKS KYPATADSKG KVQIKTEKPK ASIKLSNNTR KSKEGINEIG GSDKLEKNEF VQDADSKLEK VELVEEARKC VTKKLEKTSS KFFRKKA // ID K7KAD1_SOYBN Unreviewed; 340 AA. AC K7KAD1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH72853.1, ECO:0000313|EnsemblPlants:GLYMA02G40400.4}; GN Name=LOC100786265 {ECO:0000313|EnsemblPlants:GLYMA02G40400.4}; GN ORFNames=GLYMA_02G237500 {ECO:0000313|EMBL:KRH72853.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40400.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40400.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH72853.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72853.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G40400.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.4}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH72853.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72853.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH72853.1; -; Genomic_DNA. DR RefSeq; XP_014624894.1; XM_014769408.1. DR EnsemblPlants; GLYMA02G40400.4; GLYMA02G40400.4; GLYMA02G40400. DR GeneID; 100786265; -. DR Gramene; GLYMA02G40400.4; GLYMA02G40400.4; GLYMA02G40400. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38245 MW; 7BF687679FA36A82 CRC64; MLPLFKNWLL ILSKVNIDLP PLRKRSRSSS SSWGSYIARP LDEIKEATKE ERLCALEAAE AIQINLNSSN PSFIKSMVRS HVYSCFWLGL PSKFCEEHLP KTLHDMVLED ENGSEYEAVY IGNRAGLSGG WRAFALDHKL DDGDALVFEL IEASRFKIYI VRAFPDSVEE KGNNILEEEG NVRATKAPKA ACNLESECKT KKPKQAAVYE TKESESSQEY LLDSSIDNEV KPQGVNPTNK ETKFSQKNTP KKSKYPATAD SKGKVQIKTE KPKASIKLSN NTRKSKEGIN EIGGSDKLEK NEFVQDADSK LEKVELVEEA RKCVTKKLEK TSSKFFRKKA // ID K7KAD2_SOYBN Unreviewed; 329 AA. AC K7KAD2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40400.5}; GN Name=LOC100786265 {ECO:0000313|EnsemblPlants:GLYMA02G40400.5}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40400.5, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40400.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.5}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA02G40400.5} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40400.5}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA02G40400.5; GLYMA02G40400.5; GLYMA02G40400. DR Gramene; GLYMA02G40400.5; GLYMA02G40400.5; GLYMA02G40400. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR Proteomes; UP000008827; Chromosome 2. DR ExpressionAtlas; K7KAD2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 329 AA; 36867 MW; 219ABCFC8BCD36AD CRC64; MLPLFKNWLL ILSKVNIDLP PLRKRSRSSS SSWGSYIARP LDEIKEATKE ERLCALEAAE AIQINLNSSN PSFIKSMGLP SKFCEEHLPK TLHDMVLEDE NGSEYEAVYI GNRAGLSGGW RAFALDHKLD DGDALVFELI EASRFKIYIV RAFPDSVEEK GNNILEEEGN VRATKAPKAA CNLESECKTK KPKQAAVYET KESESSQEYL LDSSIDNEVK PQGVNPTNKE TKFSQKNTPK KSKYPATADS KGKVQIKTEK PKASIKLSNN TRKSKEGINE IGGSDKLEKN EFVQDADSKL EKVELVEEAR KCVTKKLEKT SSKFFRKKA // ID K7KAF4_SOYBN Unreviewed; 763 AA. AC K7KAF4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100780393 {ECO:0000313|EnsemblPlants:GLYMA02G40650.4}; GN ORFNames=GLYMA_02G239600 {ECO:0000313|EMBL:KRH72898.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA02G40650.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA02G40650.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40650.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH72898.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72898.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA02G40650.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA02G40650.4}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH72898.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH72898.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000835; KRH72898.1; -; Genomic_DNA. DR EMBL; CM000835; KRH72899.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA02G40650.3; GLYMA02G40650.3; GLYMA02G40650. DR EnsemblPlants; GLYMA02G40650.4; GLYMA02G40650.4; GLYMA02G40650. DR Gramene; GLYMA02G40650.3; GLYMA02G40650.3; GLYMA02G40650. DR Gramene; GLYMA02G40650.4; GLYMA02G40650.4; GLYMA02G40650. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000008827; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 637 721 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 763 AA; 85245 MW; 296C51D1D59E778B CRC64; MHADVETDEV YAQMTLQPLT PQEQKDTFLP MELGVPSKQP SNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF TVFYNPRASP SEFVIPLSKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHPGTSS FHDGRDEATN GLMWLRGGPG DQALNSLNFQ GSGLLPWMQQ RMDPTLLAND HNQHYQAMFA SGLQNLGSGD LMRQQIMNFQ QPFNYLQQSG NPNPPLQLQQ PQAIQQSVSS NNILQPQAQV MAENLSQHLL QKSHNNREDQ TQQQQQQRHT YQDTVLLQSD QLHQRQHSGL PSPSYSKPDF LDSSMKFPAS VSPGQNILGS LCPEGSGNLL NLSRSGQSML TEQLPQQSWA PKFTPLQVNA FGNSMQHVQY SGKDTAMVPP HCNSDTQNPI LFGVNIDSSG LLLPTTVPRY TTASADSDAS AMPLGESGFQ SPLYPCGQDS SELVQSAGQV DPQNQTRTFV KVYKSGSVGR SLDISRFSSY HELREELAQM FGIEGKLEDP LRSGWQLVFV DRENDVLLLG DDPWESFVNN VWYIKILSPE DIHKMGEQAL ESLGPSPGQR LNSTGADSHE IVSGLPSIGS LEY // ID K7KCN0_SOYBN Unreviewed; 905 AA. AC K7KCN0; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH65426.1, ECO:0000313|EnsemblPlants:GLYMA03G04330.2}; GN Name=LOC100778833 {ECO:0000313|EnsemblPlants:GLYMA03G04330.2}; GN ORFNames=GLYMA_03G035200 {ECO:0000313|EMBL:KRH65426.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G04330.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G04330.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G04330.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH65426.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH65426.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G04330.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G04330.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH65426.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH65426.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH65426.1; -; Genomic_DNA. DR RefSeq; XP_006576446.1; XM_006576383.2. DR STRING; 3847.GLYMA03G04330.2; -. DR EnsemblPlants; GLYMA03G04330.2; GLYMA03G04330.2; GLYMA03G04330. DR GeneID; 100778833; -. DR Gramene; GLYMA03G04330.2; GLYMA03G04330.2; GLYMA03G04330. DR KEGG; gmx:100778833; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K7KCN0; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 423 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 637 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 322 423 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 905 AA; 100287 MW; 1D43190CD0492329 CRC64; MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI ANNEKPNGSG TSKVQNVSTQ QQYTSLANQL TVRGMQVGHY AENDGLRCWF KPHNVETDGP SAEMKPEILP SVGELGNTLI SQFHCESNGS SKASKAENCK AETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE QSKTSPLLLG SRSRHLLPKP PRSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR KATNSTAVQE TLPSNMPNGS HSSETSYSGV YENLPILSGY SGLLQSQKGC SETHLNALSK KWNSAGGDMN WHSIDMPESR KRDGLPLPPV MVPEKKRTRN IGSKSKRLLI DSQDALELKL TWEEAQDLLR PPPTVKPSIV MIEDHVFEEY EEPPVFGKRS IFVVRSTGVN EQWMQCDSCS KWRKLPVDAL IPPKWTCVEN LWDQSRCSCA APNELNPREL DNLLRLNKEF KKQRLAASQR LALERESSGL DALANAAILG DDASDSGRTP VVTTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIAQRNQLS WRTKDESEVD STSRHLTPVD GLENEVRVQN ELDSRSPDDA VAEAAKGQLD LNCQPDREDV QAGPNSLSMT SLLEEANLPL ETYLKQNGLT SLITEQQTNS ASNVQAQTTN DSEVKHNEDC GTASVIHAQE SSPEENSGQD KEQNN // ID K7KCN1_SOYBN Unreviewed; 869 AA. AC K7KCN1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH65427.1, ECO:0000313|EnsemblPlants:GLYMA03G04330.3}; GN Name=LOC100778833 {ECO:0000313|EnsemblPlants:GLYMA03G04330.3}; GN ORFNames=GLYMA_03G035200 {ECO:0000313|EMBL:KRH65427.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G04330.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G04330.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G04330.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH65427.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH65427.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G04330.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G04330.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH65427.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH65427.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH65427.1; -; Genomic_DNA. DR RefSeq; XP_006576447.1; XM_006576384.2. DR EnsemblPlants; GLYMA03G04330.3; GLYMA03G04330.3; GLYMA03G04330. DR GeneID; 100778833; -. DR Gramene; GLYMA03G04330.3; GLYMA03G04330.3; GLYMA03G04330. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 322 423 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 551 601 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 322 423 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 869 AA; 96475 MW; DBC05079E3B6B6DA CRC64; MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI ANNEKPNGSG TSKVQNVSTQ QQYTSLANQL TVRGMQVGHY AENDGLRCWF KPHNVETDGP SAEMKPEILP SVGELGNTLI SQFHCESNGS SKASKAENCK AETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE QSKTSPLLLG SRSRHLLPKP PRSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR KATNSTAVQS QKGCSETHLN ALSKKWNSAG GDMNWHSIDM PESRKRDGLP LPPVMVPEKK RTRNIGSKSK RLLIDSQDAL ELKLTWEEAQ DLLRPPPTVK PSIVMIEDHV FEEYEEPPVF GKRSIFVVRS TGVNEQWMQC DSCSKWRKLP VDALIPPKWT CVENLWDQSR CSCAAPNELN PRELDNLLRL NKEFKKQRLA ASQRLALERE SSGLDALANA AILGDDASDS GRTPVVTTTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NQLSWRTKDE SEVDSTSRHL TPVDGLENEV RVQNELDSRS PDDAVAEAAK GQLDLNCQPD REDVQAGPNS LSMTSLLEEA NLPLETYLKQ NGLTSLITEQ QTNSASNVQA QTTNDSEVKH NEDCGTASVI HAQESSPEEN SGQDKEQNN // ID K7KG32_SOYBN Unreviewed; 288 AA. AC K7KG32; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH67965.1, ECO:0000313|EnsemblPlants:GLYMA03G35700.2}; GN Name=LOC100802734 {ECO:0000313|EnsemblPlants:GLYMA03G35700.2}; GN ORFNames=GLYMA_03G199000 {ECO:0000313|EMBL:KRH67965.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G35700.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G35700.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G35700.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH67965.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH67965.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G35700.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G35700.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH67965.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH67965.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH67965.1; -; Genomic_DNA. DR RefSeq; XP_006577087.1; XM_006577024.2. DR EnsemblPlants; GLYMA03G35700.2; GLYMA03G35700.2; GLYMA03G35700. DR GeneID; 100802734; -. DR Gramene; GLYMA03G35700.2; GLYMA03G35700.2; GLYMA03G35700. DR KEGG; gmx:100802734; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; K7KG32; -. DR OMA; NHKEESA; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 168 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 168 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 288 AA; 32722 MW; 7C612B03770739D9 CRC64; MSSINHYSPE TTLYWTNDQQ QQAAMWLSNS HTPRFNLNDE EEEEEDDVIV SDKATNNLTQ EEEKVAMFEK PLTPSDVGKL NRLVIPKQHA EKHFPLDSSA AKGLLLSFED ESGKCWRFRY SYWNSSQSYV LTKGWSRYVK DKRLHAGDVV LFHRHRSLPQ RFFISCSRRQ PNPVPAHVST TRSSASFYSA HPPYPAHHFP FPYQPHSLHA PGGGSQGQNE TTPGGNSSSS GSGRVLRLFG VNMECQPDNH NDSQNSTPEC SYTHLYHHQT SSYSSSSNPH HHMVPQQP // ID K7KGV5_SOYBN Unreviewed; 308 AA. AC K7KGV5; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH68721.1, ECO:0000313|EnsemblPlants:GLYMA03G40651.1}; GN ORFNames=GLYMA_03G246400 {ECO:0000313|EMBL:KRH68721.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G40651.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G40651.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G40651.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH68721.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68721.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G40651.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G40651.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH68721.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68721.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH68721.1; -; Genomic_DNA. DR RefSeq; XP_006577282.1; XM_006577219.2. DR STRING; 3847.GLYMA03G40651.1; -. DR EnsemblPlants; GLYMA03G40651.1; GLYMA03G40651.1; GLYMA03G40651. DR GeneID; 102669908; -. DR Gramene; GLYMA03G40651.1; GLYMA03G40651.1; GLYMA03G40651. DR KEGG; gmx:102669908; -. DR eggNOG; ENOG410J303; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; K7KGV5; -. DR OMA; SHESWLC; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 217 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 217 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 35486 MW; D13730062181EEBF CRC64; MESALPSHGD KSLQEFFKVF LLRTGSTKLQ IPTSFTKFFN GVLPLKVTLV DHDRKSWDVY LEKTEGCLVF KDGWQQFAKE KVLEDGDFLV FQYDGRSTFN VKIFSKTGCR KVAAPASSAK IEPTVILDED SDQRCSKEIQ CGRKRKQSPP SLKTNEESVL EGPCPSEGAR FKSKRVYEEK DDHNEKKPDP TKCVPLQNSH HFQIYFNAPW RLKKVEIPRS VLRKTNIKLM SKISLRDENG KLWPASIISI KKEYRHFLGG GWNDFRRSYN IQEGDRCDFE FVVDKANAAQ ELLVRVRSKC SFGWVDCK // ID K7KH37_SOYBN Unreviewed; 662 AA. AC K7KH37; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100820503 {ECO:0000313|EnsemblPlants:GLYMA03G41920.2}; GN ORFNames=GLYMA_03G258300 {ECO:0000313|EMBL:KRH68924.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G41920.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G41920.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G41920.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH68924.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68924.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G41920.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G41920.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH68924.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68924.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH68924.1; -; Genomic_DNA. DR STRING; 3847.GLYMA03G41920.2; -. DR EnsemblPlants; GLYMA03G41920.2; GLYMA03G41920.2; GLYMA03G41920. DR Gramene; GLYMA03G41920.2; GLYMA03G41920.2; GLYMA03G41920. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; K7KH37; -. DR OMA; VYARITL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 662 AA; 74074 MW; 19B47D7AD37E9C2B CRC64; MAGVGDGDLY TQLWKLCAGP LVDVPRQGER VFYFPQGHME QLQASTNQGL NQEIPHFNLP PKILCRVVHI QLLAEQETDE VYARITLLPE SNQEEPTSPD PSPPETQKQV FHTFSKILTA SDTSTHGGFS VLRRHATECL PQLDMTQTTP SQELVAEDLH GFEWKFKHIF RGQPRRHLLT TGWSTFVTSK KLVAGDAFVF LRGENGELRV GVRRVARQQS PMPSSVISSQ SMHLGVLATA SHAFLTSTMF VVYYKPRTSQ FIIGVNKYLE AENNKFSVGM RFKMRFEVED SPERRFSGTI VGVGDVSPGW WNSQWRSLKV QWDEPAIIPR PERVSSWEIE PFAASTALNV TQQLVKSKRS RTEVSSSEIA PNSPALAFWY RGPQDPTALG SSTEVQSNEN PVVWSTRQKE INGNPMNSSS KVRVEGMRPS SPHSKPNLFM DPKNCKAVPA QSTVSSRPKD DLAHDPMECA KRSSQNPMNC WIFGVNLTNN ITKNVTLPDK EQLGCPAIIP SGPKDSIPVA ACETEAGQNP YYSLSNKEHK QNISDGSPSA SQRHTRTRTK VQMQGIAVGR AVDLTVLKDY DDLIDELEKM FDIKGELQMQ TKWAITFTDD GNDMMLVGDD PWPEFCTVVK RIFICSREDV KKMKSKHSSS SSVGEETLLS QD // ID K7KH74_SOYBN Unreviewed; 420 AA. AC K7KH74; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH68988.1, ECO:0000313|EnsemblPlants:GLYMA03G42301.2}; GN Name=LOC100781489 {ECO:0000313|EnsemblPlants:GLYMA03G42301.2}; GN ORFNames=GLYMA_03G262200 {ECO:0000313|EMBL:KRH68988.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA03G42301.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA03G42301.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G42301.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH68988.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68988.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA03G42301.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA03G42301.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH68988.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH68988.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000836; KRH68988.1; -; Genomic_DNA. DR EMBL; CM000836; KRH68989.1; -; Genomic_DNA. DR EMBL; CM000836; KRH68990.1; -; Genomic_DNA. DR EMBL; CM000836; KRH68991.1; -; Genomic_DNA. DR RefSeq; XP_003520889.1; XM_003520841.3. DR RefSeq; XP_006577361.1; XM_006577298.2. DR RefSeq; XP_006577362.1; XM_006577299.2. DR RefSeq; XP_006577363.1; XM_006577300.2. DR RefSeq; XP_006577364.1; XM_006577301.2. DR RefSeq; XP_014629549.1; XM_014774063.1. DR EnsemblPlants; GLYMA03G42301.1; GLYMA03G42301.1; GLYMA03G42301. DR EnsemblPlants; GLYMA03G42301.2; GLYMA03G42301.2; GLYMA03G42301. DR GeneID; 100781489; -. DR Gramene; GLYMA03G42301.1; GLYMA03G42301.1; GLYMA03G42301. DR Gramene; GLYMA03G42301.2; GLYMA03G42301.2; GLYMA03G42301. DR KEGG; gmx:100781489; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; HQVVEKE; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008827; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 193 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 193 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 47128 MW; 812C55186DC0D646 CRC64; MELMQQVKGN YSDSREEEEE EEAAAITRES ESSRLHQQDT ASNFGKKLDL MDLSLGSSKE EEEEGNLQQG GGGVVHHAHQ VVEKEHMFEK VATPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKVWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGLGDL YRHRLYIDWK RRPDHAHAHP PHHHDPLFLP SIRLYSLPPT MPPRYHHDHH FHHHLNYNNL FTFQQHQYQQ LGAATTTHHN NYGYQNSGSG SLYYLRSSMS MGGGDQNLQG RGSNIVPMII DSVPVNVAHH NNNRHGNGGI TSGGTNCSGK RLRLFGVNME CASSAEDSKE LSSGSAAHVT TAASSSSLHH QRLRVPVPVP LEDPLSSSAA AAARFGDHKG ASTGTSLLFD LDPSLQYHRH // ID K7KL38_SOYBN Unreviewed; 608 AA. AC K7KL38; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH63711.1, ECO:0000313|EnsemblPlants:GLYMA04G36750.2}; GN ORFNames=GLYMA_04G192400 {ECO:0000313|EMBL:KRH63711.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA04G36750.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA04G36750.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G36750.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH63711.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH63711.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA04G36750.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G36750.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH63711.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH63711.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000837; KRH63711.1; -; Genomic_DNA. DR EMBL; CM000837; KRH63712.1; -; Genomic_DNA. DR RefSeq; XP_006578685.1; XM_006578622.2. DR EnsemblPlants; GLYMA04G36750.2; GLYMA04G36750.2; GLYMA04G36750. DR EnsemblPlants; GLYMA04G36750.3; GLYMA04G36750.3; GLYMA04G36750. DR GeneID; 102661564; -. DR Gramene; GLYMA04G36750.2; GLYMA04G36750.2; GLYMA04G36750. DR Gramene; GLYMA04G36750.3; GLYMA04G36750.3; GLYMA04G36750. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR Proteomes; UP000008827; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 544 608 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 544 608 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 608 AA; 68430 MW; EBFA82867AC88242 CRC64; MCGERQRVSA CAACTNNCLL FHKTKQTSPT SFFKLITKRE HLTTLYIPPA FSSTVSDLVN KKIALNDSSE RQWNVKVSGF NGSFAFMEGW STFSLNHGVK VGYLLVFNYV KDLHFDVKIY DPSACEKLNF PKTRNQKKRS RGRSGSPVRD CMLVGQESNA LVVTQHYVPK MKSQRSEVDL VVRKNGEESG QLMCISELHE DPCYSTSLEF DQSHGVNGTM KIVNGDLKVS NVDYGSHIFE NDAIVCSKDT MFEGIFSMAA ALDISEFEMS GRSTSLGEAD KSTHDKTSTL NIEENKESKA IMYSGEAQEC QFSNVLESDQ AAISKKEPAL HIDGSCNTKN KFNEISNHLD TYIHNGEMKK LPVDKTPKLY SSVDKLNVTG LPKETKGKLD HYSDPFNQDN ESHFKTAPPL MSNGEAQECQ FSEGLESDQA AISKKEPALH ICGFSDTKQN FDGISNDLDG EMKKLPMDMT PKLCGSMDKL NITELPKEIK DSDISNQDDE SHFKTAPPLS CVVTNDNDNV SLKLPEYLPL TRRVKPFTHK KMVVLLRDSQ MRLWPVFYHE QPRLLTHGWL DFSRANNIQP EDECIFEVEP DPESRYQRIL AVSIVHKS // ID K7KMB6_SOYBN Unreviewed; 282 AA. AC K7KMB6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G43620.2}; GN Name=LOC100800609 {ECO:0000313|EnsemblPlants:GLYMA04G43620.2}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA04G43620.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA04G43620.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G43620.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA04G43620.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G43620.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA04G43620.2; GLYMA04G43620.2; GLYMA04G43620. DR Gramene; GLYMA04G43620.2; GLYMA04G43620.2; GLYMA04G43620. DR OMA; WWGNSAG; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008827; Chromosome 4. DR ExpressionAtlas; K7KMB6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 208 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 208 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 282 AA; 32779 MW; 4418B1074F4C314B CRC64; MQPRQSRRNY VEGSDLAESE SNSKHFLKII LPSPIHANQM MQRIPEEFIK RFGDELSNVA TVTVPDGRVW KMRLKKCGKD VSFRSKWREF VEYYSLGYGS YLVFRYEGNS KFRVLIFDTT SAEICYPDLD NRKRSKVDDQ TRKKEHKEAI DEDDVNLKAW KKESDCSEIA KDASTKPKHP SVTCTIQPYR LYVRSHFSKK HLKPNVCMML QNCNGEQWDV SCVCHNTRYG GMMLTRGWRK FVRDNDLSEG DPCVLELIET NPAVVLKLTV LGAPEYHSSR PH // ID K7KMB7_SOYBN Unreviewed; 280 AA. AC K7KMB7; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G43620.3}; GN Name=LOC100800609 {ECO:0000313|EnsemblPlants:GLYMA04G43620.3}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA04G43620.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA04G43620.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G43620.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA04G43620.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA04G43620.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_003522606.1; XM_003522558.2. DR EnsemblPlants; GLYMA04G43620.3; GLYMA04G43620.3; GLYMA04G43620. DR GeneID; 100800609; -. DR Gramene; GLYMA04G43620.3; GLYMA04G43620.3; GLYMA04G43620. DR KEGG; gmx:100800609; -. DR Proteomes; UP000008827; Chromosome 4. DR ExpressionAtlas; K7KMB7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 280 AA; 32520 MW; A451CE68D81985D4 CRC64; MQPRQSRRNY VEGSDLAESE SNSKHFLKII LPSPIHANQM RIPEEFIKRF GDELSNVATV TVPDGRVWKM RLKKCGKDVS FRSKWREFVE YYSLGYGSYL VFRYEGNSKF RVLIFDTTSA EICYPDLDNR KRSKVDDQTR KKEHKEAIDE DDVNLKAWKK ESDCSEIAKD ASTKPKHPSV TCTIQPYRLY VRSHFSKKHL KPNVCMMLQN CNGEQWDVSC VCHNTRYGGM MLTRGWRKFV RDNDLSEGDP CVLELIETNP AVVLKLTVLG APEYHSSRPH // ID K7KSY2_SOYBN Unreviewed; 232 AA. AC K7KSY2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH51969.1, ECO:0000313|EnsemblPlants:GLYMA06G04200.2}; GN Name=LOC100794327 {ECO:0000313|EnsemblPlants:GLYMA06G04200.2}; GN ORFNames=GLYMA_06G038900 {ECO:0000313|EMBL:KRH51969.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA06G04200.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA06G04200.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G04200.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH51969.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH51969.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA06G04200.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA06G04200.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH51969.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH51969.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000839; KRH51969.1; -; Genomic_DNA. DR EMBL; CM000839; KRH51970.1; -; Genomic_DNA. DR EMBL; CM000839; KRH51971.1; -; Genomic_DNA. DR EMBL; CM000839; KRH51972.1; -; Genomic_DNA. DR RefSeq; XP_003528263.1; XM_003528215.3. DR RefSeq; XP_006581238.1; XM_006581175.2. DR EnsemblPlants; GLYMA06G04200.2; GLYMA06G04200.2; GLYMA06G04200. DR EnsemblPlants; GLYMA06G04200.3; GLYMA06G04200.3; GLYMA06G04200. DR EnsemblPlants; GLYMA06G04200.4; GLYMA06G04200.4; GLYMA06G04200. DR GeneID; 100794327; -. DR Gramene; GLYMA06G04200.2; GLYMA06G04200.2; GLYMA06G04200. DR Gramene; GLYMA06G04200.3; GLYMA06G04200.3; GLYMA06G04200. DR Gramene; GLYMA06G04200.4; GLYMA06G04200.4; GLYMA06G04200. DR KEGG; gmx:100794327; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; MPAPVYK; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000008827; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 232 AA; 26278 MW; 80AE7708B0AE20D3 CRC64; MVAAIAYEES RRKRVEENKK RMEALNLPLL SQALQKSSPS PKSSPLKQVK HRAIQKEVVV VRRSSRVANL PSPVYKEIVI DRVTMPRRSL CRSYDKYRDY ANRVYASDEA REEALEKAEK LMSGLESEYP AFIKSMLQSH VSGGFWLGLP VHFCKSNLPK KDEVVTLIDE DGTEYSTIYL AGKTGLSGGW RGFAIAHDLA DGDALIFQLI KRTTFKVYIV RAICPPDDKQ LE // ID K7KZP1_SOYBN Unreviewed; 491 AA. AC K7KZP1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH47751.1, ECO:0000313|EnsemblPlants:GLYMA07G05381.2}; GN Name=LOC100778733 {ECO:0000313|EnsemblPlants:GLYMA07G05381.2}; GN ORFNames=GLYMA_07G048200 {ECO:0000313|EMBL:KRH47751.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G05381.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G05381.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G05381.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH47751.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH47751.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G05381.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G05381.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH47751.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH47751.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH47751.1; -; Genomic_DNA. DR EMBL; CM000840; KRH47752.1; -; Genomic_DNA. DR RefSeq; XP_003529866.2; XM_003529818.3. DR RefSeq; XP_006583192.1; XM_006583129.2. DR EnsemblPlants; GLYMA07G05381.1; GLYMA07G05381.1; GLYMA07G05381. DR EnsemblPlants; GLYMA07G05381.2; GLYMA07G05381.2; GLYMA07G05381. DR EnsemblPlants; GLYMA07G05381.3; GLYMA07G05381.3; GLYMA07G05381. DR GeneID; 100778733; -. DR Gramene; GLYMA07G05381.1; GLYMA07G05381.1; GLYMA07G05381. DR Gramene; GLYMA07G05381.2; GLYMA07G05381.2; GLYMA07G05381. DR Gramene; GLYMA07G05381.3; GLYMA07G05381.3; GLYMA07G05381. DR KEGG; gmx:100778733; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; INATTHH; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 491 AA; 55487 MW; 85CD899FDA180C1B CRC64; MELMQEVKGY SDGREEEEEE EEAAEEIITR EESSRLLHQH QEAAGSNFII NNNHHHHQHH HHHTTKQLDF MDLSLGSSKD EGNLQGSSSS VYAHHHHAAS ASSSANGNNN NSSSSNLQQQ QQQPAEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD SSANEKGLLL NFEDRNGKLW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDMVSFQRGV GELYRHRLYI DWWRRPDHHH HHHHGPDHST TLFTPFLIPN QPHHLMSIRW GATGRLYSLP SPTPPRHHEH LNYNNNAMYH PFHHHGAGSG INATTHHYNN YHEMSSTTTS GSAGSVFYHR STPPISMPLA DHQTLNTRQQ QQQQQQQEGA GNVSLSPMII DSVPVAHHLH HQQHHGGKSS GPSSTSTSPS TAGKRLRLFG VNMECASSTS EDPKCFSLLS SSSMANSNSQ PPLQLLREDT LSSSSARFGD QRGVGEPSML FDLDPSLQYR Q // ID K7KZU2_SOYBN Unreviewed; 716 AA. AC K7KZU2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100790981 {ECO:0000313|EnsemblPlants:GLYMA07G06060.2}; GN ORFNames=GLYMA_07G054800 {ECO:0000313|EMBL:KRH47893.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G06060.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G06060.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G06060.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH47893.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH47893.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G06060.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G06060.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH47893.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH47893.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH47893.1; -; Genomic_DNA. DR RefSeq; XP_006583221.1; XM_006583158.2. DR STRING; 3847.GLYMA07G06060.2; -. DR EnsemblPlants; GLYMA07G06060.2; GLYMA07G06060.2; GLYMA07G06060. DR GeneID; 100790981; -. DR Gramene; GLYMA07G06060.2; GLYMA07G06060.2; GLYMA07G06060. DR KEGG; gmx:100790981; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; K7KZU2; -. DR KO; K14486; -. DR OMA; HEANPSL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 677 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 79530 MW; 3913EB8EE3721706 CRC64; MAHLECNLGG PGSSGTSQPE KGLKDDDLYR ELWKLCAGPL VDVPRNGDRV FYFPQGHMEQ LQASTDQELN QEIPHFNLPA KIFCRVVNIQ LLAEQDTDEV YACIALLPES DQTEPTNPDP NVSEAPKQKF HSFCKILTAS DTSTHGGFSV LRKHATECLP ELDMTQSTPT QELAAKDLHG FEWKFKHIYR GQPRRHLLTT GWSTFVASKR LVAGDAFVFL RGEHGQLRVG VRRLARQQSP MPSSVISSQS MHLGVLATAS HAVMTRTMFL VYYKPRTSQF IVGLNKYLEA VNNKFSLSMR FKMRFEGDDS PERRFSGTIV GVGDVSAGWS NSQWRSLKVQ WDEPATIPRP DRVSCWEIEP FVASTALNVT QPAVKGKRSR PADVLSSAAS GFWYHGSSNE LSQLGAAAEV QSKENQVVPC SLRQKDIINS NPINANNSSI STRVRMEGVW PSSPHLNATP NLFSDPNNNN SNNGVSARSL ISGYPNVPSR SSDGPTCDGV EDGKKTENSL DCWLFGVNLT NNCSNVITTP SEREQRGPSS SVVLSGPKES IPAAACETER VQTPNYSLSN KGQKQIISEA SPNQWQNKQA TVLSMRTRTK VQMQGVAVGR AFDLTTLSGY DDLIDELEKL FEIRGELRSQ DKWAVTFTDD ENDMMLAGDD PWPEFCNMVK RIFICSREDL KKMKCCKLPA SSSEVEEILL SPDSQNRDET QQSHMP // ID K7KZU3_SOYBN Unreviewed; 713 AA. AC K7KZU3; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100790981 {ECO:0000313|EnsemblPlants:GLYMA07G06060.3}; GN ORFNames=GLYMA_07G054800 {ECO:0000313|EMBL:KRH47892.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G06060.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G06060.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G06060.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH47892.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH47892.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G06060.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G06060.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH47892.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH47892.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH47892.1; -; Genomic_DNA. DR RefSeq; XP_006583222.1; XM_006583159.2. DR EnsemblPlants; GLYMA07G06060.3; GLYMA07G06060.3; GLYMA07G06060. DR GeneID; 100790981; -. DR Gramene; GLYMA07G06060.3; GLYMA07G06060.3; GLYMA07G06060. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 593 674 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 713 AA; 79301 MW; AFFB49CB109129C4 CRC64; MAHLECNLGG PGSSGTSQPE KGLKDDDLYR ELWKLCAGPL VDVPRNGDRV FYFPQGHMEQ LQASTDQELN QEIPHFNLPA KIFCRVVNIQ LLAEQDTDEV YACIALLPES DQTEPTNPDP NVSEAPKQKF HSFCKILTAS DTSTHGGFSV LRKHATECLP ELDMTQSTPT QELAAKDLHG FEWKFKHIYR GQPRRHLLTT GWSTFVASKR LVAGDAFVFL RGEHGQLRVG VRRLARQQSP MPSSVISSQS MHLGVLATAS HAVMTRTMFL VYYKPRTSQF IVGLNKYLEA VNNKFSLSMR FKMRFEGDDS PERRFSGTIV GVGDVSAGWS NSQWRSLKVQ WDEPATIPRP DRVSCWEIEP FVASTALNVT QPAVKGKRSR PADVLSSGFW YHGSSNELSQ LGAAAEVQSK ENQVVPCSLR QKDIINSNPI NANNSSISTR VRMEGVWPSS PHLNATPNLF SDPNNNNSNN GVSARSLISG YPNVPSRSSD GPTCDGVEDG KKTENSLDCW LFGVNLTNNC SNVITTPSER EQRGPSSSVV LSGPKESIPA AACETERVQT PNYSLSNKGQ KQIISEASPN QWQNKQATVL SMRTRTKVQM QGVAVGRAFD LTTLSGYDDL IDELEKLFEI RGELRSQDKW AVTFTDDEND MMLAGDDPWP EFCNMVKRIF ICSREDLKKM KCCKLPASSS EVEEILLSPD SQNRDETQQS HMP // ID K7L1Z6_SOYBN Unreviewed; 322 AA. AC K7L1Z6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH49477.1, ECO:0000313|EnsemblPlants:GLYMA07G19395.1}; GN ORFNames=GLYMA_07G157300 {ECO:0000313|EMBL:KRH49477.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G19395.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G19395.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G19395.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH49477.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49477.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G19395.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G19395.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH49477.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49477.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH49477.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA07G19395.1; GLYMA07G19395.1; GLYMA07G19395. DR Gramene; GLYMA07G19395.1; GLYMA07G19395.1; GLYMA07G19395. DR InParanoid; K7L1Z6; -. DR OMA; GEDHTSK; -. DR OrthoDB; EOG093618S9; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 322 AA; 37688 MW; 902FEA71CC82AAE8 CRC64; MSSQGYGVHF FKVILESTLR KGQLKVPSSF TRRHWQGISN PVILSLPNGT KRKVYWLKDG CDVWFSNGWR EFAKKLRLDV SHFVVFRYEG NSCFNVIIFG KSALEVEYPS SHDSNVEVEE INDTDFSAKF GEDHTSKSSK KRKIIPKEED DDDDDEPKHC KKDSGFDYSK QKNGGWFYFL ILFRSSQGDF KRRIKMFHEK VKEMFYAENE HFTCLIQKTY TERDLLILPM EFSKPYLHKE GNATLFVDDG RSWDVGLRVN HYGQLTFSRG WRKFSLENKL KVGDVCGFEL HNSEKFSFEV SIYRLEENSS TPIFKGSIIY LP // ID K7L245_SOYBN Unreviewed; 468 AA. AC K7L245; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH49567.1, ECO:0000313|EnsemblPlants:GLYMA07G21160.2}; GN Name=LOC100806715 {ECO:0000313|EnsemblPlants:GLYMA07G21160.2}; GN ORFNames=GLYMA_07G163700 {ECO:0000313|EMBL:KRH49567.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G21160.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G21160.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G21160.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH49567.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49567.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G21160.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G21160.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH49567.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49567.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH49567.1; -; Genomic_DNA. DR STRING; 3847.GLYMA07G21160.2; -. DR EnsemblPlants; GLYMA07G21160.2; GLYMA07G21160.2; GLYMA07G21160. DR Gramene; GLYMA07G21160.2; GLYMA07G21160.2; GLYMA07G21160. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; K7L245; -. DR OMA; CATIDFR; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 331 426 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 331 426 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 468 AA; 53047 MW; 4C3AE6C4CBBAC6D4 CRC64; MPRPCFDKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWPI GLKKADNRIW FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAMRN HNEGSCFANY HHIFDEMEDV DSLGLSDLSP QYLTPGALQS KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL NRVNWGDGGS AFSLKDANSQ GNQSTRDIGV QFNAVEFKRS TEELKLRYSN SNEEAVNKTA KKKRKSEPCK FLFLFKFSLS GNVKDDIFLL ITNTMCGTID GEEPSGENEE EAEMRYRFYE SASARKRTVT AEERERAINA SKTFEPTNPF CRVVLRPSYL YRGCIMYLPS TFAEKNLNGV SGFIKLQLSN GRQWSVRCLY RGGRAKLSQG WFEFTVENNL GEGDVCVFEL LRMKEVVLQV TVFRVTEDAG LLNQLPMQQQ QQSPNISHTK LLNPHLQHRI STTKLIRN // ID K7L247_SOYBN Unreviewed; 355 AA. AC K7L247; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH49568.1, ECO:0000313|EnsemblPlants:GLYMA07G21160.4}; GN Name=LOC100806715 {ECO:0000313|EnsemblPlants:GLYMA07G21160.4}; GN ORFNames=GLYMA_07G163700 {ECO:0000313|EMBL:KRH49568.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G21160.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G21160.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G21160.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH49568.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49568.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G21160.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G21160.4}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH49568.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH49568.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH49568.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA07G21160.3; GLYMA07G21160.3; GLYMA07G21160. DR EnsemblPlants; GLYMA07G21160.4; GLYMA07G21160.4; GLYMA07G21160. DR EnsemblPlants; GLYMA07G21160.5; GLYMA07G21160.5; GLYMA07G21160. DR Gramene; GLYMA07G21160.3; GLYMA07G21160.3; GLYMA07G21160. DR Gramene; GLYMA07G21160.4; GLYMA07G21160.4; GLYMA07G21160. DR Gramene; GLYMA07G21160.5; GLYMA07G21160.5; GLYMA07G21160. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 218 313 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 218 313 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 40108 MW; 3C767CFAEB1D3992 CRC64; MYEGNSSFIV HIFNLSTSEV NYQSAMRNHN EGSCFANYHH IFDEMEDVDS LGLSDLSPQY LTPGALQSKG FAGSVDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSAF SLKDANSQGN QSTRDIGVQF NAVEFKRSTE ELKLRYSNSN EEAVNKTAKK KRKSEPYGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKT FEPTNPFCRV VLRPSYLYRG CIMYLPSTFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTVENNLGEG DVCVFELLRM KEVVLQVTVF RVTEDAGLLN QLPMQQQQQS PNISHTKLLN PHLQHRISTT KLIRN // ID K7L2T6_SOYBN Unreviewed; 709 AA. AC K7L2T6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100796970 {ECO:0000313|EnsemblPlants:GLYMA07G32300.2}; GN ORFNames=GLYMA_07G202200 {ECO:0000313|EMBL:KRH50128.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G32300.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G32300.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G32300.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH50128.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH50128.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G32300.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G32300.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH50128.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH50128.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH50128.1; -; Genomic_DNA. DR RefSeq; XP_003529354.1; XM_003529306.3. DR STRING; 3847.GLYMA07G32300.2; -. DR EnsemblPlants; GLYMA07G32300.2; GLYMA07G32300.2; GLYMA07G32300. DR GeneID; 100796970; -. DR Gramene; GLYMA07G32300.2; GLYMA07G32300.2; GLYMA07G32300. DR KEGG; gmx:100796970; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; K7L2T6; -. DR KO; K14486; -. DR OMA; SANQAHE; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 709 AA; 77935 MW; 8D9D9A1642262C71 CRC64; MAGLIDLNNA TEDDEMPSSG SSSTVCLELW HACAGPLISL PKKGSVVVYF PQGHLEQHLH DFPLPASANI PSHVFCRVLD VKLHAEEGSD EVHCQVVLVP ETEQVHQKLR EGEFDADGEE EDAEAVMKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELVAKDL HGQEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGEDGELR LGIRRAAQLK SGSTFSALSG QQLSPTSLMD VVNALSARCA FSIHYNPRVS TSEFIIPIHR FLKSLDYSYS AGMRFRMRFE TEDAAERRFT GLIVGIADVD PVRWPGSKWR CLMVRWDDLE VTRHNRVSPW EIEPSGSAST ANNLMSAGLK RTKIGLPSAK LEFPVSNAIG TSDFGESLRF QKVLQGQEML GVNPTYDSIN AQSHQVSDLR RCYPVSNYPR IAATGNSIGI PQVSSNVSSN GIGFSESFRF QKVLQGQEIF PSQPYGRALS VDEACGNSRC GLFDGYQVMR SRNGWCSDMS NNSSNLHPPV PSGQVSSPSS VLMFQQAVNL VSNSDYNNKI SQVMGGKFHQ RVSYASDVKG GKFVSTPYEP LLCGLAKEGT NSFGLSNFHN QLDSSRSHDS ISVLRANQEL VPSCKSSCRV FGFSLTEVAP IANKEAADSS SVACSGPSFT RHVDDDFHPG HSLRSKAVAS YCTKGVLQY // ID K7L3A1_SOYBN Unreviewed; 182 AA. AC K7L3A1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH50494.1, ECO:0000313|EnsemblPlants:GLYMA07G35040.2}; GN Name=LOC100804948 {ECO:0000313|EnsemblPlants:GLYMA07G35040.2}; GN ORFNames=GLYMA_07G224100 {ECO:0000313|EMBL:KRH50494.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G35040.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G35040.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G35040.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH50494.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH50494.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G35040.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G35040.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH50494.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH50494.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH50494.1; -; Genomic_DNA. DR RefSeq; XP_003529446.1; XM_003529398.3. DR RefSeq; XP_006583943.1; XM_006583880.2. DR EnsemblPlants; GLYMA07G35040.2; GLYMA07G35040.2; GLYMA07G35040. DR EnsemblPlants; GLYMA07G35040.3; GLYMA07G35040.3; GLYMA07G35040. DR GeneID; 100804948; -. DR Gramene; GLYMA07G35040.2; GLYMA07G35040.2; GLYMA07G35040. DR Gramene; GLYMA07G35040.3; GLYMA07G35040.3; GLYMA07G35040. DR KEGG; gmx:100804948; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR OMA; RLDQGWA; -. DR OrthoDB; EOG09360Z5S; -. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 182 AA; 20428 MW; 7DD086843E5BCC16 CRC64; MFSRRSSGRV ASGRVALENG VPLPLLPDPK ANLQWDEVKP LSGKPYWHSV LSPTNLQPRY NLMPGMNLRS KLPSNEVPTI LIYGGKSWDM VYYGQSKQKA FGVTGWKKFV IDNCLRVGDA CIFELMESSD KKVILEVQIL RGDIPSEWLG NEMIIGQGNE MIIGQENEMI IGHSRENPIV LN // ID K7L3A3_SOYBN Unreviewed; 156 AA. AC K7L3A3; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G35040.4}; GN Name=LOC100804948 {ECO:0000313|EnsemblPlants:GLYMA07G35040.4}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G35040.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G35040.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G35040.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA07G35040.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G35040.4}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006583944.1; XM_006583881.1. DR EnsemblPlants; GLYMA07G35040.4; GLYMA07G35040.4; GLYMA07G35040. DR GeneID; 100804948; -. DR Gramene; GLYMA07G35040.4; GLYMA07G35040.4; GLYMA07G35040. DR Proteomes; UP000008827; Chromosome 7. DR ExpressionAtlas; K7L3A3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 156 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5003907026. FT DOMAIN 59 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 156 AA; 17684 MW; 1007C646D74F7BA0 CRC64; MFDTMLRIFA CRFFISFSFS GHSSCPQCFL ADQVEEMPGM NLRSKLPSNE VPTILIYGGK SWDMVYYGQS KQKAFGVTGW KKFVIDNCLR VGDACIFELM ESSDKKVILE VQILRGDIPS EWLGNEMIIG QGNEMIIGQE NEMIIGHSRE NPIVLN // ID K7L3A4_SOYBN Unreviewed; 146 AA. AC K7L3A4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH50493.1, ECO:0000313|EnsemblPlants:GLYMA07G35040.5}; GN Name=LOC100804948 {ECO:0000313|EnsemblPlants:GLYMA07G35040.5}; GN ORFNames=GLYMA_07G224100 {ECO:0000313|EMBL:KRH50493.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA07G35040.5, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA07G35040.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G35040.5}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH50493.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH50493.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA07G35040.5} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA07G35040.5}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH50493.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH50493.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000840; KRH50493.1; -; Genomic_DNA. DR RefSeq; XP_006583945.1; XM_006583882.2. DR EnsemblPlants; GLYMA07G35040.5; GLYMA07G35040.5; GLYMA07G35040. DR GeneID; 100804948; -. DR Gramene; GLYMA07G35040.5; GLYMA07G35040.5; GLYMA07G35040. DR Proteomes; UP000008827; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16440 MW; 6DB0883AA7E1BA8D CRC64; MHKFLMSLES GHSSCPQCFL ADQVEEMPGM NLRSKLPSNE VPTILIYGGK SWDMVYYGQS KQKAFGVTGW KKFVIDNCLR VGDACIFELM ESSDKKVILE VQILRGDIPS EWLGNEMIIG QGNEMIIGQE NEMIIGHSRE NPIVLN // ID K7L4N0_SOYBN Unreviewed; 1113 AA. AC K7L4N0; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100791531 {ECO:0000313|EnsemblPlants:GLYMA08G03141.2}; GN ORFNames=GLYMA_08G027800 {ECO:0000313|EMBL:KRH41403.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G03141.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G03141.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G03141.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH41403.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH41403.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA08G03141.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G03141.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH41403.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH41403.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000841; KRH41403.1; -; Genomic_DNA. DR EMBL; CM000841; KRH41404.1; -; Genomic_DNA. DR RefSeq; XP_003532453.1; XM_003532405.3. DR RefSeq; XP_006584791.1; XM_006584728.2. DR STRING; 3847.GLYMA08G03141.1; -. DR EnsemblPlants; GLYMA08G03141.1; GLYMA08G03141.1; GLYMA08G03141. DR EnsemblPlants; GLYMA08G03141.2; GLYMA08G03141.2; GLYMA08G03141. DR GeneID; 100791531; -. DR Gramene; GLYMA08G03141.1; GLYMA08G03141.1; GLYMA08G03141. DR Gramene; GLYMA08G03141.2; GLYMA08G03141.2; GLYMA08G03141. DR KEGG; gmx:100791531; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1001 1085 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1113 AA; 122551 MW; 45773B0DFA4BD5D7 CRC64; MITQPPDAAP AVAPNSGEGG EKKSINAELW QACAGPLLNL PSPGTHVVYF PQGHSEQVAA SLKKDVDAQV PNYTNLPSKI PCLLHNVTLH ADPDTDEVYA QMALRPVPSF DTDALLRSDI SLKLSKPQPE FFCKQLTASD TSTHGGFSVP RRAAEKIFPP LDYSLQSPVQ ELVARDLHDN VWRFRHIYRG KPKRHLLTTG WSLFISGKRL LAGDSVLFVR DEKQQLLLGI RRANRQPSNL SSSVLSSDSM HIGVLAAAAQ AVANNSPFTV FYNPRASPSE FVIPLAKYYK AVYSHHISPG MHFRMTFETE DSGTRRYMGT IIGVSDLDSV RWKNSLWRNL QVGWDESTAE DRRSRVSVWE IEPVTTPYFI CPPPFFRSKR PRLLGMPDDE PDFNNLFKST VPWLGDDMCI KDPQALPGLS LVQWMNMQQN PALASSLQPN CVPSMSGLVL QNLPGADIAN QLGFSTSQTS QSNNVSVNAQ NILQTSQQLD HIQKLPCPSS ALGAVTQLPQ QLADITQQPR NLTNQTLPQN EAHTQLLNSQ RVVQTNNILQ QQQSSIQNHQ LLRSLSQNPP QKDQQTTFGQ NERQNVFQSP MPDHFNQQLQ MSDNQVRFQL LQKLQQQQQT LLAQQSALQQ PALIQVQDQQ RQLLDVTNNS SSLISGQVLE NPPTLQNSLP EANSVTHQIT MPSSQKNFHY SHLSQQPALL SEMSGHAGLL PTVTTNPLSA SGGSILTGAG QSVITDDVPS CSTSPSTNNR ASALPPVVSS QIHRSTTIGD DMAQSAVTIS GPSTLETLSS NANMVKDVRP KYEVKPSSNI SKNQNHGNVA RQMYLNGVVQ TDYLDSSSST TSLYHFQSDT HMHQNNNPFS YNPQLIYCRD NSQNVEVQAD ARSNVPFVND INGQMGMPSN LDSLLTNGTV GLGKDLSNNF SSGGLLGDLE NNKGVQPELS SSMVSQTFEV PDMSFNSIDS TIDGSSFLNR GPWDLPPPPP PPPPPPPPPP PQQQQQIQRI RTYTKVYKRG AVGRSIDITR YSGYEELKQD LALKFGIEGQ LEDRERIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQMS LDGDFGNGGL PYPAGSSSGG GNA // ID K7LAD9_SOYBN Unreviewed; 250 AA. AC K7LAD9; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G44655.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA08G44655.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA08G44655.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G44655.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA08G44655.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA08G44655.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA08G44655.1; GLYMA08G44655.1; GLYMA08G44655. DR Gramene; GLYMA08G44655.1; GLYMA08G44655.1; GLYMA08G44655. DR eggNOG; ENOG410JJ9I; Eukaryota. DR eggNOG; ENOG410ZGW8; LUCA. DR InParanoid; K7LAD9; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 250 AA; 28388 MW; 072FD47D5EA6AB18 CRC64; MTSQLDDGDG SYGYSATKPI HFFRIMLHEN LLQGNLRLPE KFVRKYGNHL SNSMLLKLPN GIEWKVNLEK RDGSVWFQEG WKDFAEYYSL ANGHLLGFRY DGTSHFHVFI CDMSTMEIEY PVNKANHKRP SINSEESQPH KTQKTDENMN KSNSNLQDTD IHKEARDHKG KGNMEGSSIS NCGNHEAAGN TSFTVIMKSS YHRHRHGHRT RHGHGHVDTC NVQNIERNTG VVSVSDTDTD ACRTPDTAKG // ID K7LCZ4_SOYBN Unreviewed; 74 AA. AC K7LCZ4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G15521.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA09G15521.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA09G15521.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G15521.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA09G15521.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G15521.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA09G15521.1; GLYMA09G15521.1; GLYMA09G15521. DR Gramene; GLYMA09G15521.1; GLYMA09G15521.1; GLYMA09G15521. DR InParanoid; K7LCZ4; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008827; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 64 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 64 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 74 AA; 8399 MW; 03BBD017200A085A CRC64; MDASPKGKEW IFQFRFWPNN NSKMYVLEGV TPCIQSMQLQ AGDIVTFSLL ELEGRLVMGF RKASSVMPSD QVIV // ID K7LDA1_SOYBN Unreviewed; 360 AA. AC K7LDA1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH38154.1, ECO:0000313|EnsemblPlants:GLYMA09G18790.2}; GN Name=LOC100815331 {ECO:0000313|EnsemblPlants:GLYMA09G18790.2}; GN ORFNames=GLYMA_09G114900 {ECO:0000313|EMBL:KRH38154.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA09G18790.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA09G18790.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G18790.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH38154.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH38154.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA09G18790.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G18790.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH38154.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH38154.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000842; KRH38154.1; -; Genomic_DNA. DR RefSeq; XP_003535137.1; XM_003535089.3. DR EnsemblPlants; GLYMA09G18790.2; GLYMA09G18790.2; GLYMA09G18790. DR GeneID; 100815331; -. DR Gramene; GLYMA09G18790.2; GLYMA09G18790.2; GLYMA09G18790. DR KEGG; gmx:100815331; -. DR eggNOG; ENOG410JDIP; Eukaryota. DR eggNOG; ENOG4111D0V; LUCA. DR InParanoid; K7LDA1; -. DR OMA; CKDELEC; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000008827; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40776 MW; DBA1E71BC64973D6 CRC64; MTSACNKNPK PIAVRFFKNI FRASLAHGLL KLPTIFTKKY GDGMSNPVSL KSPDSTRWKI YWTKHDGEIW FQKGWKEYAT YYGLDHGHLL FFEYEGTSHF NVHIFDTSAV EIDYPSNGTH HGKDSSHVEI SDDPVEILDE KFSCQKTREK STVSSPQPTK KMKAGLTTNV KKRPNVVNLH RHVQIRSIKS QKAKFVKHEL DEDESRGIFH TERPKGEQLT STALNRATAF RSENPSFKLV MNPSFIYGDY LEIPPEFAEI YLKKTHAVVI LEVLEGRTWP VICSAPTITG GWHKFASENH LNVGDVCVFE LIQKIQGLAF KVSIFRGAEE PSCPISQASA DGFCEEVFCK DELECGDVTV // ID K7LDA2_SOYBN Unreviewed; 359 AA. AC K7LDA2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G18790.3}; GN Name=LOC100815331 {ECO:0000313|EnsemblPlants:GLYMA09G18790.3}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA09G18790.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA09G18790.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G18790.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA09G18790.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G18790.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA09G18790.3; GLYMA09G18790.3; GLYMA09G18790. DR Gramene; GLYMA09G18790.3; GLYMA09G18790.3; GLYMA09G18790. DR eggNOG; ENOG410JDIP; Eukaryota. DR eggNOG; ENOG4111D0V; LUCA. DR Proteomes; UP000008827; Chromosome 9. DR ExpressionAtlas; K7LDA2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 40648 MW; 80A63D984BE4A6A8 CRC64; MTSACNKNPK PIAVRFFKNI FRASLAHGLL LPTIFTKKYG DGMSNPVSLK SPDSTRWKIY WTKHDGEIWF QKGWKEYATY YGLDHGHLLF FEYEGTSHFN VHIFDTSAVE IDYPSNGTHH GKDSSHVEIS DDPVEILDEK FSCQKTREKS TVSSPQPTKK MKAGLTTNVK KRPNVVNLHR HVQIRSIKSQ KAKFVKHELD EDESRGIFHT ERPKGEQLTS TALNRATAFR SENPSFKLVM NPSFIYGDYL EIPPEFAEIY LKKTHAVVIL EVLEGRTWPV ICSAPTITGG WHKFASENHL NVGDVCVFEL IQKIQGLAFK VSIFRGAEEP SCPISQASAD GFCEEVFCKD ELECGDVTV // ID K7LDC4_SOYBN Unreviewed; 528 AA. AC K7LDC4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH38192.1, ECO:0000313|EnsemblPlants:GLYMA09G20150.1}; GN ORFNames=GLYMA_09G117200 {ECO:0000313|EMBL:KRH38192.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA09G20150.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA09G20150.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G20150.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH38192.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH38192.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA09G20150.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G20150.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH38192.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH38192.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000842; KRH38192.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA09G20150.1; GLYMA09G20150.1; GLYMA09G20150. DR Gramene; GLYMA09G20150.1; GLYMA09G20150.1; GLYMA09G20150. DR eggNOG; ENOG410JDIP; Eukaryota. DR eggNOG; ENOG4111D0V; LUCA. DR InParanoid; K7LDC4; -. DR OMA; QHTTHAM; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 275 367 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 425 523 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 275 367 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 425 523 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 528 AA; 60548 MW; 57020A151268103F CRC64; MLQINISSSQ EAIALFFFFF ISFSALLSQK SHFAFTLRSH LRIHNMTSAR NKHPLPPAVH FVKIILTTSL ADGILLPKKF TRKYGDGMSN PVFLKPADGT EWKIHYTKHG GEIWFQKGWK EFATYYSLDH GHLLFFEYEG TSHFDVHIFD SSALEIDYPS HGTHEGKDNL VEISDDSVEI LGEQFSCQNT RGSSPQPCKK MKNSITTNVE RSPNVVNLHQ HVPTISNSSQ KATFMKQMLD EDDGIGIFNT EYPKVEQSTS TALKKASTFR SEHPFFRLVM KPSFINGYYL EIPPQFAERY LKKTHAIVIL EILDGRTWSV ICSATRLTEG WQKFASENNL NVGDVCVFEL IQKIQGLCFK VSIYQGAEEP ICPISQVHPS TNWTGGTSSQ RSSQVKSRSK LKILTIRYIA LKRASKFTSE NPFFMVTLTT KLKSIITRDV HVPMDFVRKH LVNVKQKLMM IHFRKKLWPV RFVVRESSTV SGNLSTGWAW FVRENELQRG DVCIFELFNR EDATFDAHVF RGHREVMH // ID K7LDC5_SOYBN Unreviewed; 399 AA. AC K7LDC5; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH38193.1, ECO:0000313|EnsemblPlants:GLYMA09G20150.2}; GN ORFNames=GLYMA_09G117200 {ECO:0000313|EMBL:KRH38193.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA09G20150.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA09G20150.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G20150.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH38193.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH38193.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA09G20150.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G20150.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH38193.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH38193.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000842; KRH38193.1; -; Genomic_DNA. DR RefSeq; XP_014617263.1; XM_014761777.1. DR EnsemblPlants; GLYMA09G20150.2; GLYMA09G20150.2; GLYMA09G20150. DR GeneID; 100818507; -. DR Gramene; GLYMA09G20150.2; GLYMA09G20150.2; GLYMA09G20150. DR KEGG; gmx:100818507; -. DR eggNOG; ENOG410JDIP; Eukaryota. DR eggNOG; ENOG4111D0V; LUCA. DR Proteomes; UP000008827; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 275 367 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 275 367 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 45227 MW; C87BBDD08220C873 CRC64; MLQINISSSQ EAIALFFFFF ISFSALLSQK SHFAFTLRSH LRIHNMTSAR NKHPLPPAVH FVKIILTTSL ADGILLPKKF TRKYGDGMSN PVFLKPADGT EWKIHYTKHG GEIWFQKGWK EFATYYSLDH GHLLFFEYEG TSHFDVHIFD SSALEIDYPS HGTHEGKDNL VEISDDSVEI LGEQFSCQNT RGSSPQPCKK MKNSITTNVE RSPNVVNLHQ HVPTISNSSQ KATFMKQMLD EDDGIGIFNT EYPKVEQSTS TALKKASTFR SEHPFFRLVM KPSFINGYYL EIPPQFAERY LKKTHAIVIL EILDGRTWSV ICSATRLTEG WQKFASENNL NVGDVCVFEL IQKIQGLCFK VSIYQGAEEP ICPISQACAD GLCQKAFSKR EAEVDDDTL // ID K7LDC8_SOYBN Unreviewed; 631 AA. AC K7LDC8; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G20281.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA09G20281.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA09G20281.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G20281.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA09G20281.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA09G20281.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA09G20281.1; GLYMA09G20281.1; GLYMA09G20281. DR Gramene; GLYMA09G20281.1; GLYMA09G20281.1; GLYMA09G20281. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K7LDC8; -. DR OrthoDB; EOG09361ALI; -. DR Proteomes; UP000008827; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 631 AA; 71657 MW; 89930FC171C2E233 CRC64; MTKLKKKHPL PSEILFFKII SEASLQDGKL IPNKFTREYG VNLSNPVFLK PPDGIEWKIF WTKHDGDIWF QKGWKEFATY YSLSHKYLVL FKYQETSHLE VHIFDQSALE VDYPFCGIKI EHENLDHVSN DSVEVSDDSI EVLDELTPSQ KKTRLKSTSC SRPRKKLNTG PSEVFEESSN LPQHVQIKGE QSQGTNLGMS SDKQVLDGMA PEQPPAKRQK KDQSSSQSAH RTEYPTKFRT VTHEQRYETE IKMRNFIPEK NFKLKPGEYD EIQKVITWRK WEKLCSFAQN FHPQIVREFY ANAYGIEGDT TPLHTSWVRG KMVSYEEETI NSFFGTQAAA DCSYKAGGDL VKDYGEMKKL LARPGAIWIG KKVKPRCLRS IDLYPVVHAW SSWMHHTVLP CANESNVTVV RSQFLIATIL NEPLDIGRII SSDIHQVAQT NKPKATLSHP SLICFLCERA GVGIPWDEPT ATIPRPITAA WIDSRLDGPM GAPPQPQEQQ PQPQPQQEQE QHAQEDQPPA PSSLDQCLML LVQTQTQLSQ DIHRLVTEAR VQSRGTNALC RLLALQFRSQ QQQELLKPQG QLTEADILQM VGLEKPAKPS SWHPAKVPTA DGAGEDLQDE DLIYPSSSQP I // ID K7LHL4_SOYBN Unreviewed; 700 AA. AC K7LHL4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100796522 {ECO:0000313|EnsemblPlants:GLYMA10G06080.2}; GN ORFNames=GLYMA_10G053500 {ECO:0000313|EMBL:KRH32480.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA10G06080.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA10G06080.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G06080.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH32480.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH32480.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA10G06080.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G06080.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH32480.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH32480.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000843; KRH32480.1; -; Genomic_DNA. DR RefSeq; XP_003537296.1; XM_003537248.3. DR RefSeq; XP_006588784.1; XM_006588721.2. DR RefSeq; XP_014618485.1; XM_014762999.1. DR STRING; 3847.GLYMA10G06080.2; -. DR EnsemblPlants; GLYMA10G06080.2; GLYMA10G06080.2; GLYMA10G06080. DR EnsemblPlants; GLYMA10G06080.3; GLYMA10G06080.3; GLYMA10G06080. DR GeneID; 100796522; -. DR Gramene; GLYMA10G06080.2; GLYMA10G06080.2; GLYMA10G06080. DR Gramene; GLYMA10G06080.3; GLYMA10G06080.3; GLYMA10G06080. DR KEGG; gmx:100796522; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; PEFCVKS; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 614 694 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 77266 MW; 3BCD35C18C2EE7E1 CRC64; MITFMDTKEK SKEVESCLDP QLWHACAGGI VQMPAVNSKV YYFPQGHAEH ACGPVNFRTC PKVPPFVPCR VTAVKYRADP ETDEVYAKLK LIPLNANDVD YDRDVVGGAE TQDKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VDPPVQNILA KDVHGETWKF RHIYRGTPRR HLLTTGWSTF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGICGGLETS SGWNPAGGNC HIPYGGFSPF FREDDNRISR NGNSNGLNPS VSMMGKGKVR PEAVSEASNL AANKKPFEVV YYPRASTPEF CVKASLVEAA LQIRWCSGIR FKMAFETEDS SRISWFMGTI SSAQVADPLN WPNSPWRLLQ VTWDEPDLLQ NVRRVSPWLV ELVSNMPAIH FSPFSPPRKK LRLPQQPDFP LDGQIPLSTF PSNLLGPSNT NQFGCLLEST PAGMQGARHA HYGLSLSDLH LSKLQSGLFS TGFPSLDHAA TPMRVSNSIT LQKPNLSENV SCLLTMANST QSSKKLDVGK TPSLVLFGQK ILTEQQISPS SSGDTLSPVL TRNCSSDGNV DKVTNFSDGS GSALHQEGLR EHSSCERFQW CKDNHQETEA GLEIGHCKVF MESEDVGRTM DLSLLRSYDE LHRKLADMFG IEKSEMLSHV LYRDSTGAVK RISDESFSDF TRTAKRLTIL MDSGSNNVGV // ID K7LHY6_SOYBN Unreviewed; 337 AA. AC K7LHY6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH32791.1, ECO:0000313|EnsemblPlants:GLYMA10G08871.1}; GN Name=LOC100795470 {ECO:0000313|EnsemblPlants:GLYMA10G08871.1}; GN ORFNames=GLYMA_10G076100 {ECO:0000313|EMBL:KRH32791.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA10G08871.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA10G08871.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G08871.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH32791.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH32791.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA10G08871.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G08871.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH32791.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH32791.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000843; KRH32791.1; -; Genomic_DNA. DR RefSeq; XP_003537081.1; XM_003537033.3. DR EnsemblPlants; GLYMA10G08871.1; GLYMA10G08871.1; GLYMA10G08871. DR GeneID; 100795470; -. DR Gramene; GLYMA10G08871.1; GLYMA10G08871.1; GLYMA10G08871. DR KEGG; gmx:100795470; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; K7LHY6; -. DR OMA; NAVMEND; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008827; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38494 MW; 9286F9AD99A5A0AA CRC64; MSINHYSMDL PEPTLWWPHP HHQQQQLTLM DPDPLRLNLN SDDGNGNDND NDENQTTTTG GEQEILDDKE PMFEKPLTPS DVGKLNRLVI PKQHAEKYFP LSGDSGGSEC KGLLLSFEDE SGKCWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDAGDVVL FERHRVDAQR LFIGWRRRRQ SDAALPPAHV SSRKSGGGDG NSNKNEGWTR GFYSAHHPYP THHLHHHQPS PYQQQHDCLH AGRGSQGQNQ RMRPVGNNSS SSSSSSRVLR LFGVDMECQP EHDDSGPSTP QCSYNSNNML PSTQGTDHSH HNFYQQQPSN SNPSPHHMMV HHQPYYY // ID K7LKL9_SOYBN Unreviewed; 612 AA. AC K7LKL9; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100803053 {ECO:0000313|EnsemblPlants:GLYMA10G35481.1}; GN ORFNames=GLYMA_10G210600 {ECO:0000313|EMBL:KRH34867.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA10G35481.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA10G35481.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G35481.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH34867.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH34867.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA10G35481.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G35481.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH34867.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH34867.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000843; KRH34867.1; -; Genomic_DNA. DR RefSeq; XP_003535530.2; XM_003535482.3. DR EnsemblPlants; GLYMA10G35481.1; GLYMA10G35481.1; GLYMA10G35481. DR GeneID; 100803053; -. DR Gramene; GLYMA10G35481.1; GLYMA10G35481.1; GLYMA10G35481. DR KEGG; gmx:100803053; -. DR InParanoid; K7LKL9; -. DR OMA; IIAKDMH; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 612 AA; 67128 MW; 535970636E6EE893 CRC64; MFMVMDSAER CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKVE YFGKNHQTRV PPLIPCRLSA MKYMADPDTD EVYVKMRLTP LREHELLDSQ DDCFLGNTNS GGVENQEKPP TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDMHG QCWKFRHIYR GTPRRHLLTT GWSNFVNQKR LVAGDSIVFL RAENGDLCVG IRRAKKGIGG GTEFSSGWNN PLFGGGGGFL CGSESSFVSG AKSGGDHEIV GRVAPESVVE AVTCAVNGRP FEVVYYPRAS SPEFCVKASV VKAAMQIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPDSPW RLLQVVWDEP DLLQNVKCVN PWLVELVSNM PTFNLSAYSP PRKKQRFLQD PYFQVINQLP MPSFSSNLLN YTNSLCTIQD SNSSGGIQGA RHAQFGLSPS DFPFNKLPAD MLLGGFSRLD HAAAQPIRPP CGTYKNNTTT KANVGISCLL TVGNPGQNFK ESNETKAPHI LLFGKLIQTE QKSSNTSSAN TNGNSVSEGN SHKTSNASDG VGSGLHQGSP IENNSDGGSP WYKDQHKSDL GTDNVNTLCI AL // ID K7LLX4_SOYBN Unreviewed; 262 AA. AC K7LLX4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G42762.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA10G42762.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA10G42762.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G42762.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA10G42762.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G42762.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA10G42762.1; GLYMA10G42762.1; GLYMA10G42762. DR Gramene; GLYMA10G42762.1; GLYMA10G42762.1; GLYMA10G42762. DR InParanoid; K7LLX4; -. DR OMA; HGMENIT; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 70 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 100 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 165 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 70 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 100 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 165 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 262 AA; 30532 MW; 13FE0C22A5D835B4 CRC64; VILKTNLERL CLSSLYGNEW KVNWTKQNGE VWFEKGWKEF VEHYSLDQGR LIFFKYEGTS QIDVLILDQS ALEIDYPCDT CDENDNLDHT HEAPDIIFGE WPYQKAGQMT GAGWMEFLKD NNLKIGDLCV FEQIKKPGIS FRVVIFRDRE QSSASQVSRC NNEMLENDFT LSVKPNQNYM SIPIEFARNH GMENITKVIL RVGNRSWPVK LNYYSKHNYC RLTSGWSEFM SQCKLKSGDV CHFELIDKGK FVFEVRVTGC ID // ID K7LLX5_SOYBN Unreviewed; 367 AA. AC K7LLX5; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH36062.1, ECO:0000313|EnsemblPlants:GLYMA10G42774.1}; GN ORFNames=GLYMA_10G281200 {ECO:0000313|EMBL:KRH36062.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA10G42774.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA10G42774.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G42774.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH36062.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH36062.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA10G42774.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G42774.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH36062.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH36062.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000843; KRH36062.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA10G42774.1; GLYMA10G42774.1; GLYMA10G42774. DR Gramene; GLYMA10G42774.1; GLYMA10G42774.1; GLYMA10G42774. DR InParanoid; K7LLX5; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 311 364 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 311 364 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 367 AA; 42586 MW; FB162C3ED8CF879D CRC64; MYGIGDIIEN SNAYEALQCK NIQRIPRSFV NKCWEGISNP VVLVLPNGAE WKVNWKRLDL DVWLIDEWKK FAQVLSLDKD HLMVFRYVGN SQFQVVILDQ SGLEVGYPLI NATLDGEETG NVFHQRKKRA KSPLPISPST KRVKTNPRKE PTNPGQDVET RHAESERTKA KKRGRRRMMY ANKRCSKSKA FQSEELLEDN ESSTALERAN SFRFENPFFI RQMYPSYIQK HFMEKTWHVN FYLNRSSKQI ILGAGWGDFV KDNNLKIGNV CVLEQIKKPG ISFRVVIYRY LEESNPSKFP AKVILRVGNG SWPVRLDHCP KHSYCRLTFG WSNFMSACKL KAGDVCNLEL VNKDRFVFQV RVARCIH // ID K7LLX6_SOYBN Unreviewed; 420 AA. AC K7LLX6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G42787.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA10G42787.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA10G42787.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G42787.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA10G42787.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G42787.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA10G42787.1; GLYMA10G42787.1; GLYMA10G42787. DR Gramene; GLYMA10G42787.1; GLYMA10G42787.1; GLYMA10G42787. DR InParanoid; K7LLX6; -. DR OMA; INDQEAS; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008827; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 341 415 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 341 415 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 49138 MW; 9C6575FAC2587A7C CRC64; MSSHGRNIHF FKRIEEDTIR KGELRIPRSF VNKYWEGISN PVLLLLPKGA EWNVKWKKLD ADIWLIDEWK KFAEFCSLDQ EHLLVFKYVG KSRFQVVTFD QNGLEMQYPL MSETLLDGNS ICQRKRAKSP FSHSPSIKKV KTNPRKEPAN YPSHDVKTEP AQSQRANVEL SKNFHADDLV KAKPKKRGGN VEEEGSCVPN LKLFKILKFM PGNFITEDQQ REDDHVFLWI SSERAWHVKF YPSHSSGQIL LSIGWMDFVK DNNLKIGDVC VFDQIKKPGI SFRVVIFRDT EESSPSKFPG WRKWKQTNRA SKYSEFRRCN NEVSENDFTL SISKPCQFYC MYVPKKFIRS HEMDHINEVK LQVGKRSWNV KLDCYGRFTS GLHDFLSQCN VEAGDVCHFE LIDKKKFVFE VRVTRCISID // ID K7LPD0_SOYBN Unreviewed; 337 AA. AC K7LPD0; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH29568.1, ECO:0000313|EnsemblPlants:GLYMA11G13231.1}; GN Name=LOC100809844 {ECO:0000313|EnsemblPlants:GLYMA11G13231.1}; GN ORFNames=GLYMA_11G124300 {ECO:0000313|EMBL:KRH29568.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G13231.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G13231.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13231.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29568.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29568.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G13231.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13231.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH29568.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29568.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH29568.1; -; Genomic_DNA. DR RefSeq; XP_003539033.2; XM_003538985.3. DR EnsemblPlants; GLYMA11G13231.1; GLYMA11G13231.1; GLYMA11G13231. DR GeneID; 100809844; -. DR Gramene; GLYMA11G13231.1; GLYMA11G13231.1; GLYMA11G13231. DR KEGG; gmx:100809844; -. DR eggNOG; ENOG410JESD; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; K7LPD0; -. DR OMA; FTHEANM; -. DR OrthoDB; EOG09360YHN; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38771 MW; A0A8D34A09E2D7F3 CRC64; MFHCSSITIT MGDFSLHENN MDYHQDNPAV FFTIINNTKL LKVPEEFLKH LNEDLSSNAV LIGPSGDKWQ VTILKKGNNV YMNNGWSQFL KDNSVVLDEF LLFTYHGGNC FYVQIFCGNG LERLCLKETR QEQAVTPQFL DLTFSNKALI SDGCEIKKTS QEQASTPSLV RITNKSKQRK TSAGSFLHHE SKSSCQEDLP FSNKALLSKD FPKPLSSIKF ETSEACKLAE SFTSRNPHWK HLMTKCNVED HCTLHIATQF ACKYIPEVVK QIILWNSEGK FWEVEVTCLR YQNKRYTRFT TGWGKFVRDN KLMKGDTCIF ELEDENHMSV HIFRTSV // ID K7LPD1_SOYBN Unreviewed; 265 AA. AC K7LPD1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH29569.1, ECO:0000313|EnsemblPlants:GLYMA11G13231.2}; GN Name=LOC100809844 {ECO:0000313|EnsemblPlants:GLYMA11G13231.2}; GN ORFNames=GLYMA_11G124300 {ECO:0000313|EMBL:KRH29569.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G13231.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G13231.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13231.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29569.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29569.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G13231.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13231.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH29569.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29569.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH29569.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA11G13231.2; GLYMA11G13231.2; GLYMA11G13231. DR Gramene; GLYMA11G13231.2; GLYMA11G13231.2; GLYMA11G13231. DR eggNOG; ENOG410JESD; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 265 AA; 29964 MW; 5B682FD6663CB52F CRC64; MFHCSSITIT MGDFSLHENN MDYHQDNPAV FFTIINNTKL LKVPEEFLKH LNEDLSSNAV LIGPSGDKWQ VTILKKGNNV YMNNGWSQFL KDNSVVLDEF LLFTYHGGNC FYVQIFCGNG LERLCLKETR QEQAVTPQFL DLTFSNKALI SDGCEIKKTS QEQASTPSLV RITNKSKQRK TSAGSFLHHE SKSSCQEDLP FSNKALLSKD FPKPLSSIKF ETSEACKLAE SFTSRNPHWK HLMTKCNVED HCTLDGENSF VITSS // ID K7LPD9_SOYBN Unreviewed; 336 AA. AC K7LPD9; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH29583.1, ECO:0000313|EnsemblPlants:GLYMA11G13350.7}; GN Name=LOC100811445 {ECO:0000313|EnsemblPlants:GLYMA11G13350.7}; GN ORFNames=GLYMA_11G125200 {ECO:0000313|EMBL:KRH29583.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G13350.7, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G13350.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13350.7}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH29583.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29583.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G13350.7} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G13350.7}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH29583.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH29583.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH29583.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29584.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29585.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29586.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29587.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29588.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29589.1; -; Genomic_DNA. DR EMBL; CM000844; KRH29590.1; -; Genomic_DNA. DR RefSeq; XP_003539036.1; XM_003538988.3. DR RefSeq; XP_006590924.1; XM_006590861.2. DR RefSeq; XP_006590925.1; XM_006590862.2. DR RefSeq; XP_006590926.1; XM_006590863.2. DR RefSeq; XP_006590927.1; XM_006590864.2. DR RefSeq; XP_014619491.1; XM_014764005.1. DR RefSeq; XP_014619492.1; XM_014764006.1. DR RefSeq; XP_014619493.1; XM_014764007.1. DR EnsemblPlants; GLYMA11G13350.2; GLYMA11G13350.2; GLYMA11G13350. DR EnsemblPlants; GLYMA11G13350.3; GLYMA11G13350.3; GLYMA11G13350. DR EnsemblPlants; GLYMA11G13350.4; GLYMA11G13350.4; GLYMA11G13350. DR EnsemblPlants; GLYMA11G13350.5; GLYMA11G13350.5; GLYMA11G13350. DR EnsemblPlants; GLYMA11G13350.6; GLYMA11G13350.6; GLYMA11G13350. DR EnsemblPlants; GLYMA11G13350.7; GLYMA11G13350.7; GLYMA11G13350. DR GeneID; 100811445; -. DR Gramene; GLYMA11G13350.2; GLYMA11G13350.2; GLYMA11G13350. DR Gramene; GLYMA11G13350.3; GLYMA11G13350.3; GLYMA11G13350. DR Gramene; GLYMA11G13350.4; GLYMA11G13350.4; GLYMA11G13350. DR Gramene; GLYMA11G13350.5; GLYMA11G13350.5; GLYMA11G13350. DR Gramene; GLYMA11G13350.6; GLYMA11G13350.6; GLYMA11G13350. DR Gramene; GLYMA11G13350.7; GLYMA11G13350.7; GLYMA11G13350. DR KEGG; gmx:100811445; -. DR eggNOG; ENOG410JJ8V; Eukaryota. DR eggNOG; ENOG41119ZM; LUCA. DR OMA; NDHCICE; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 39473 MW; E305459F4FE1D07F CRC64; MTTGAERYPD FFKVFLPERH SERMLIPNAF VRLPQSQGRI PEDVILRNIS GRVWQVKTRY IGEKLYFDDG WNAFHEENCL GHADFLVFKH DRSNEFKVLI LESSTQCQKP VVKMEEENEQ EQAAAQHAED CDIEEEEDSS SKDENYDDDS DDSDFDDDEE SKEEFGAGFK SQSHHRRACK RETASSSNPD AEDPLPEYVF DPEMCIQREN HFFKAKLYRT RPNELHIPGN SIQEFSLTFP ENYVTLICCQ PCQRKDIPMN ELGDYHHNLT QQTHIRKKYQ EVTGRVCRWQ DRICIKGWAS FSKRNKIERN DTCFCEVISG EDQVVRTLEV HVARRR // ID K7LPW1_SOYBN Unreviewed; 792 AA. AC K7LPW1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100816621 {ECO:0000313|EnsemblPlants:GLYMA11G15910.2}; GN ORFNames=GLYMA_U019800 {ECO:0000313|EMBL:KRG89020.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G15910.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G15910.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G15910.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG89020.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89020.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G15910.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G15910.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG89020.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89020.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KQ474118; KRG89020.1; -; Genomic_DNA. DR EMBL; KQ474118; KRG89021.1; -; Genomic_DNA. DR RefSeq; XP_006591025.1; XM_006590962.2. DR EnsemblPlants; GLYMA11G15910.2; GLYMA11G15910.2; GLYMA11G15910. DR GeneID; 100816621; -. DR Gramene; GLYMA11G15910.2; GLYMA11G15910.2; GLYMA11G15910. DR InParanoid; K7LPW1; -. DR OMA; THDEVEK; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 748 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 88149 MW; 00645BBB0CE31AA3 CRC64; MEIDLNHEVT EVEKNAFCDR ECEKGVGVTC WSSSTCSSST SSSSALVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQVASFSPFT PLEIPTYDLQ PQIFCRVVNV QLLANKENDE VYTQVTLLPQ AELEGMYLEG KELEELGAEE EGDDRSPTKS TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HDVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRGENGELR LGIRRAVRPR NDLPESVIGS QNCYPNVLSS VANAISTKSK FHVFYSPRAS QADFVVPYQK YVKSIKNPVS IGTRFKMRFE MDESQERRCC SGMLIGTSDL DPYRWPKSKW RCLMVRWDED IETNHKDRVS PWEIDPSAPL PPLSIQSSPR LKKLRTGLQV ASPSHLITAA RGRGLIDFEE SVRSPKVLQG QENAGFGSLY YGCDTVTKPP GFEMSSQSHP NLGSAEVRKI TSSELSSVHP FSYAGFVETN RFPRVLQGQE ICPLKSLTGK VDMNLGAWGM PNLSCTTFNL HQATKPSFQL SLFPYGDIHQ ASQASLFCSK STTFQRENVP FNKPSTQAGI IVNEVGRSDL PNDHKLQGNN ISAAGNMGVS IDNNVQGKVN ACKLFGFSLS GETTTQNLQN SAKRSCTKVH KQGSLVGRAI DLSRLSGYND LLSELERLFS MEGLLKDPDK GWKILYTDSE NDIMVVGDDP WHEFCDVVSK IHIYTQEEVE KMTIEMISDD THSCLEEAPV IMEASKSSSV GQPDYSPTAV RV // ID K7LR55_SOYBN Unreviewed; 911 AA. AC K7LR55; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH30645.1, ECO:0000313|EnsemblPlants:GLYMA11G31234.1}; GN Name=LOC100789848 {ECO:0000313|EnsemblPlants:GLYMA11G31234.1}; GN ORFNames=GLYMA_11G197900 {ECO:0000313|EMBL:KRH30645.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA11G31234.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA11G31234.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G31234.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH30645.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH30645.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA11G31234.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA11G31234.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH30645.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH30645.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000844; KRH30645.1; -; Genomic_DNA. DR EMBL; CM000844; KRH30646.1; -; Genomic_DNA. DR RefSeq; XP_006591264.2; XM_006591201.2. DR RefSeq; XP_014619648.1; XM_014764162.1. DR RefSeq; XP_014619649.1; XM_014764163.1. DR RefSeq; XP_014619650.1; XM_014764164.1. DR STRING; 3847.GLYMA11G31234.1; -. DR EnsemblPlants; GLYMA11G31234.1; GLYMA11G31234.1; GLYMA11G31234. DR GeneID; 100789848; -. DR Gramene; GLYMA11G31234.1; GLYMA11G31234.1; GLYMA11G31234. DR KEGG; gmx:100789848; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K7LR55; -. DR OMA; MHSEDAL; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008827; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 597 647 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 100739 MW; 808E651286B7CEC9 CRC64; MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDRLSA YENSVFCNKF HRQQTGWREC NFCNKPIHSG CIVSRSLFGY LDFGGIGCVS CVNTTQLSMM RNTENPNVSV SSIKNNASDR HSAHFDGRLL VGGVDEGKLM QFCKIIEASE SSHWNHAQSD GIIAHHGQNN QEAKCSFREG DIGFSNVRKP SVQSLTFATL ENNRSTWEIK NMHESNAQPS FSMYLGNASG NDSVPPSAGE AVEGRLEGKT SPPFQRSRPI CPKPLKSGLT MNVETDKGAI SQSRVARPPA DGRGKNQLLP RYWPRITDQE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQAM QLCAGDTVTF SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNSAKGTISS GTENLPSGSN HANLLHSLTG NVETHLNGHT EHLHLGTGTA GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI DNEDAMELKL TWEEAQDLLR PPPSVKPNIV TIEDQVFEEY DEPPVFGKRT IFSACSSGGK EQWAQCDDCS KWRKLPVDAL LPPKWTCSEN VWDSSRCSCS VPEELSSKEL ENLLKTNKDF KKRRIAESSK SIQEHEASGL DALASAAVLG ENLVDTAESS AGATTKHPRH RPGCSCIVCI QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADTAQKDQTL LKDEPDTNGA PRDDTSRLEK EVGLNKSQHQ VGESSTGQID LNSHPNREDM QVETTGLNMS SHLEPATNHT VGEFMDKNDL RRSFNNEVQT GQNSSLHTPP QSSGEGQRYF SDGRCFASIV WNQERKDEVH SQPNQSQNNL S // ID K7LT28_SOYBN Unreviewed; 310 AA. AC K7LT28; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH24551.1, ECO:0000313|EnsemblPlants:GLYMA12G05241.1}; GN Name=LOC100810594 {ECO:0000313|EnsemblPlants:GLYMA12G05241.1}; GN ORFNames=GLYMA_12G048500 {ECO:0000313|EMBL:KRH24551.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G05241.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G05241.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05241.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH24551.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24551.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G05241.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05241.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH24551.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24551.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH24551.1; -; Genomic_DNA. DR RefSeq; XP_003541119.2; XM_003541071.3. DR UniGene; Gma.22780; -. DR EnsemblPlants; GLYMA12G05241.1; GLYMA12G05241.1; GLYMA12G05241. DR EnsemblPlants; GLYMA12G05241.2; GLYMA12G05241.2; GLYMA12G05241. DR GeneID; 100810594; -. DR Gramene; GLYMA12G05241.1; GLYMA12G05241.1; GLYMA12G05241. DR Gramene; GLYMA12G05241.2; GLYMA12G05241.2; GLYMA12G05241. DR KEGG; gmx:100810594; -. DR eggNOG; ENOG410JJ8V; Eukaryota. DR eggNOG; ENOG41119ZM; LUCA. DR OMA; VECELLH; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 36350 MW; F5815B17F19A2446 CRC64; MSTGAQRYPD FFKVFLPERH SERMLIPNAF VRLPQLQGRI PEDVILRNAS GRVWHVKTRY VGEKLYFDDG WRAFHQENCL GQADFLVFKL ERRNEFVVLI LQLSTQCQKP LVKMEEEQAA TQLVEEPDSS SDDDDEESGE EFSAGFNLQS HHRRACKRET ASSSNPNAED PLPEYVFDPQ MCIHPENHFF KAKLYRTRPN ELHIPGNAIQ EFSLTLPEKI TLICCQPCQR KDIPMNELGD YHHNLTPIRI KYQEVTGRVC RWQDHRIYIK GWASFCRRNK IERNDTCFCE VISGEDQVVK TLRVHVARRR // ID K7LT30_SOYBN Unreviewed; 315 AA. AC K7LT30; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH24556.1, ECO:0000313|EnsemblPlants:GLYMA12G05261.1}; GN ORFNames=GLYMA_12G048700 {ECO:0000313|EMBL:KRH24556.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G05261.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G05261.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05261.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH24556.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24556.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G05261.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05261.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH24556.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH24556.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH24556.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA12G05261.1; GLYMA12G05261.1; GLYMA12G05261. DR Gramene; GLYMA12G05261.1; GLYMA12G05261.1; GLYMA12G05261. DR eggNOG; ENOG410JESD; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; K7LT30; -. DR OMA; EANSWES; -. DR OrthoDB; \N; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 36668 MW; DC41A6F99F335EB8 CRC64; MYLYQVSFQF LFHCSSITMG DFSLHENNMD YHQDNLAVFF TIIKNTKLLK VPEEFLKHLN EDLWSNEVLI GPSGDKWLVT IWKKGNDVYM KNGWSLFLKD NSVVLDEFFL FTYHGGNCFH VQIFGGNGLE RLCLEETRQE QAAIPQFFDL PFSNNASLFD GYEIKKTRQE QASIPSLART KNKSKQRKTS AGSLHHHESK SCQEDLPFCN KALLSKDFPK PMSSIKIESS EACKLVESFT SRDPHWKHLM TKCNVEDHCT LHIATEFACK YILEAVKQII LRNSEGKFWE VEVACLRYQN KRYTQIYDRM GKIRA // ID K7LT38_SOYBN Unreviewed; 289 AA. AC K7LT38; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05371.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G05371.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G05371.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05371.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA12G05371.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G05371.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA12G05371.1; GLYMA12G05371.1; GLYMA12G05371. DR Gramene; GLYMA12G05371.1; GLYMA12G05371.1; GLYMA12G05371. DR eggNOG; ENOG410JJ8V; Eukaryota. DR eggNOG; ENOG41119ZM; LUCA. DR InParanoid; K7LT38; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 33758 MW; 7E7921A5B4BE8AE4 CRC64; MAVVDYQSVD LVLSLQGRIP EDVILRNASE RAWHVKTRYV EEKLYFDDGW RAFHQENCLG QADFLVFKHE RRNEFVVLIL QLSTQCQKPL VKMEEEQAAT QLVEEPDSSS DDDDEESGEE FGAGFNLQSH HRRACKRETA SSSNPNAEDP LPQYVFDPEI CIHPENHFFK AKLYRTRPNE LHIPGNAIQE FSLTLPEKIT LICCQPCQRK DIPMNELGDY HHNLTPIRIK YQEVTGIVCR WQDHRIYIKG WASFCRRNKI ERNDTCFCEV ISGEDQVVKT LRVHVARRR // ID K7LVF6_SOYBN Unreviewed; 798 AA. AC K7LVF6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100812909 {ECO:0000313|EnsemblPlants:GLYMA12G29280.4}; GN ORFNames=GLYMA_12G171000 {ECO:0000313|EMBL:KRH26387.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G29280.4, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G29280.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.4}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH26387.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26387.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G29280.4} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.4}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH26387.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26387.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH26387.1; -; Genomic_DNA. DR RefSeq; XP_006592680.1; XM_006592617.2. DR EnsemblPlants; GLYMA12G29280.4; GLYMA12G29280.4; GLYMA12G29280. DR GeneID; 100812909; -. DR Gramene; GLYMA12G29280.4; GLYMA12G29280.4; GLYMA12G29280. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 753 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 798 AA; 88633 MW; 4F35F545F0107F07 CRC64; MEIDLNDAVT SEAEKSASCN GECEKGAALS SPTCSSSGSS STRVSSSYIE LWHACAGPLT SLPKKGNVVV YFPQGHLEQA ASFSPFSPME MPTYDLQPQI FCRVVNIQLL ANKENDEVYT QVTLLPQAEL AGMYMEGKEL EKLGADEEGN ETTPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKKQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV FYSPRASHAD FAVPYQKYIK SIKNPVTIGT RFKMKFEMDE SPERRCTSGI VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE VDPSASLPPL SIQSSRRLKK LRPGLLAAAP NHLTTGSSGF MDSEESVRSS KVLQGQENTG FMSLYYGCDT VTKQPEFEIR SPSHPNLAST GVRKIAAAEF MRVHPSSYAG FTETNMFPRV LQGQEICPFR SLAGKVDLNF GSWGKPNVSY TNYNLHQATK PNFHSFGPEV VQTAYFPYGD IHKAGQGSSM LCSNPTNFQR EDIPFNTPSI QSGITIPNEQ KLQDNISGAA SLGANMRIPN DDNFKGKVNA CKLFGFPLSR ETTAQNLQNS SKRSCTKVHK QGSLVGRAID LSRLSSYNDL LIELERLFSM EGLLIDPNKG WRILYTDSEN DIMVVGDDPW HLPFVCSEFC DVVSKIHIHT QEEVEKMTIG MMINDDSQSC LEQAPVMVEA SKSSSVGQPD SSPTVVRM // ID K7LVF7_SOYBN Unreviewed; 793 AA. AC K7LVF7; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100812909 {ECO:0000313|EnsemblPlants:GLYMA12G29280.5}; GN ORFNames=GLYMA_12G171000 {ECO:0000313|EMBL:KRH26390.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA12G29280.5, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA12G29280.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.5}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH26390.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26390.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA12G29280.5} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA12G29280.5}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH26390.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH26390.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000845; KRH26390.1; -; Genomic_DNA. DR RefSeq; XP_003540166.1; XM_003540118.3. DR EnsemblPlants; GLYMA12G29280.5; GLYMA12G29280.5; GLYMA12G29280. DR GeneID; 100812909; -. DR Gramene; GLYMA12G29280.5; GLYMA12G29280.5; GLYMA12G29280. DR KEGG; gmx:100812909; -. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR Proteomes; UP000008827; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 746 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 88086 MW; 499499C6F6C34E6E CRC64; MEIDLNDAVT SEAEKSASCN GECEKGAALS SPTCSSSGSS STRVSSSYIE LWHACAGPLT SLPKKGNVVV YFPQGHLEQA ASFSPFSPME MPTYDLQPQI FCRVVNIQLL ANKENDEVYT QVTLLPQAEL AGMYMEGKEL EKLGADEEGN ETTPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKKQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV FYSPRASHAD FAVPYQKYIK SIKNPVTIGT RFKMKFEMDE SPERRCTSGI VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE VDPSASLPPL SIQSSRRLKK LRPGLLAAAP NHLTTVGSSG FMDSEESVRS SKVLQGQENT GFMSLYYGCD TVTKQPEFEI RSPSHPNLAS TGVRKIAAAE FMRVHPSSYA GFTETNMFPR VLQGQEICPF RSLAGKVDLN FGSWGKPNVS YTNYNLHQAT KPNFHSFGPE VVQTAYFPYG DIHKAGQGSS MLCSNPTNFQ REDIPFNTPS IQSGITIPNE QKLQDNISGA ASLGANMRIP NDDNFKGKVN ACKLFGFPLS RETTAQNLQN SSKRSCTKVH KQGSLVGRAI DLSRLSSYND LLIELERLFS MEGLLIDPNK GWRILYTDSE NDIMVVGDDP WHEFCDVVSK IHIHTQEEVE KMTIGMMIND DSQSCLEQAP VMVEASKSSS VGQPDSSPTV VRM // ID K7LXK5_SOYBN Unreviewed; 238 AA. AC K7LXK5; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G05926.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G05926.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G05926.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G05926.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA13G05926.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G05926.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA13G05926.1; GLYMA13G05926.1; GLYMA13G05926. DR Gramene; GLYMA13G05926.1; GLYMA13G05926.1; GLYMA13G05926. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR InParanoid; K7LXK5; -. DR OMA; FINTMRI; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 184 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 184 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 238 AA; 27303 MW; BC94E5303074FC11 CRC64; MTSSHNKHPL PTAVHFFKII LRTSLAHGIL KLPKDFTTKY GDSMSNLVFL NPPDGIEWKI CWTKLDGKIW FEKGWKEYAT YYSLDHGHLL LFQYQGTSHF DVHIFDNSAI EVDYPSSPGT RDGKERHVEI SDDSVEILDA QFSCQKTRVK STVPSPQPSK EMKFGPTTNV ERSPRPVICS SLRITGGWQK FASENNLNVG DVCVFELIQS FAFKVQRDQV SPFHKVTYYS FFINTMRI // ID K7LZP0_SOYBN Unreviewed; 514 AA. AC K7LZP0; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100803846 {ECO:0000313|EnsemblPlants:GLYMA13G20382.1}; GN ORFNames=GLYMA_13G140600 {ECO:0000313|EMBL:KRH19869.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G20382.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G20382.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G20382.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH19869.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH19869.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G20382.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G20382.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH19869.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH19869.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH19869.1; -; Genomic_DNA. DR EMBL; CM000846; KRH19870.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA13G20382.1; GLYMA13G20382.1; GLYMA13G20382. DR EnsemblPlants; GLYMA13G20382.2; GLYMA13G20382.2; GLYMA13G20382. DR Gramene; GLYMA13G20382.1; GLYMA13G20382.1; GLYMA13G20382. DR Gramene; GLYMA13G20382.2; GLYMA13G20382.2; GLYMA13G20382. DR OMA; QGHAHAD; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 514 AA; 57052 MW; F93FA99A98826F15 CRC64; MITFMDTKEK LKEVERCLDP QLWHACAGGM VQMPTVNTKV YYFPQGHAEH ACGPVNFKTC PKVPPFVPCR VVAVKYMADP ETDEVYAKLK LVPLNANDVD YDHDVIGAET RDKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGLETSS GWNPAGGNFP MPYSGFSPFL REDDNRILRN GNSNGLNPSV SMMGKGKVRP EAIIEAANLA ANKKPFEVVY YPRASTPEFC VKASLVEAAM QTRWYSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHF SPFSPPRKKL RLPQHPDFPL DGQIPLPTLP NNLLGPNNTN QFGCLLESTP AGMQGARHAH YGLSLSDLHL SKLQSGLSSA GFPPLDHAAT PMKVSNNRHC KSLASVRTSL AYYL // ID K7M0A7_SOYBN Unreviewed; 711 AA. AC K7M0A7; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100808119 {ECO:0000313|EnsemblPlants:GLYMA13G24240.3}; GN ORFNames=GLYMA_13G174000 {ECO:0000313|EMBL:KRH20374.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA13G24240.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA13G24240.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G24240.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH20374.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH20374.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA13G24240.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA13G24240.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH20374.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH20374.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000846; KRH20374.1; -; Genomic_DNA. DR RefSeq; XP_006594299.1; XM_006594236.2. DR EnsemblPlants; GLYMA13G24240.3; GLYMA13G24240.3; GLYMA13G24240. DR GeneID; 100808119; -. DR Gramene; GLYMA13G24240.3; GLYMA13G24240.3; GLYMA13G24240. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000008827; Chromosome 13. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 711 AA; 77931 MW; 8472609BAF1E0186 CRC64; MAGLIDLNNA TEDDETPSSG SSSSSSSSTV CLELWHACAG PMISLPKKGS VVVYFPQGHL EQHLHDFPLP ASANIPSHVF CRVLDVKLHA EEGSDEVYCQ VVLVPESEQK LREGEFDADG EEEDAEAVMK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSQ QRPSQELVAK DLHGQEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGEDGE LRLGIRRAAQ LKSGSTFSAL SGQQGSPTSL MDVVNALSAR CAFSIHYNPR VSSSEFIIPI HRFVKSLDYS YSAGMRFRMR FETEDAAERR FTGLIVGIAD VDPVRWPGSR WRCLMVRWDD LEATRHNRVS PWEIEPSGSA STANNLMSAG LKRTKIGLPS AKLDFPVSNA IGTSDFGESL RFQKVLQGQE MLGVNTTYDS FNAQSHQLSD LRRCYPGSNY PRIAATGNSI GISQVSSNVS NNGIGFSESF RFQKVLQGQE ILPSQPYGRA LSVDEACGNG RFGLFDGFQA MRSRNGWSSH VSNNSSHLHP PVPSGQVSSP SSVFMFQQAV NPVLNSDYNN QIGQVMGDKV HQRVSYASEV KGGKFVSTPY EPLLRGLSQE GTNSFGLSNF HNQLDSSRSH DSVSVLRASQ ELVPSCKSRC RVFGFSLTEG APVASKEATD SSAVACAGPS FTRHVEDDFH PGHSLRSKAV ASYCTKGVLQ Y // ID K7M536_SOYBN Unreviewed; 317 AA. AC K7M536; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH14899.1, ECO:0000313|EnsemblPlants:GLYMA14G06031.1}; GN Name=LOC100810634 {ECO:0000313|EnsemblPlants:GLYMA14G06031.1}; GN ORFNames=GLYMA_14G055700 {ECO:0000313|EMBL:KRH14899.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G06031.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G06031.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G06031.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH14899.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH14899.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA14G06031.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G06031.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH14899.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH14899.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000847; KRH14899.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA14G06031.1; GLYMA14G06031.1; GLYMA14G06031. DR Gramene; GLYMA14G06031.1; GLYMA14G06031.1; GLYMA14G06031. DR eggNOG; ENOG410JJ8V; Eukaryota. DR eggNOG; ENOG41119ZM; LUCA. DR InParanoid; K7M536; -. DR OMA; RGDCKET; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000008827; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 317 AA; 37113 MW; 97DEAAFAD7996C7B CRC64; MAAKKYFVTV FKPEEHSESM LIPDAFVKST RLQGWRIPED VILTNVGRRV WNVKTRLVGN KIYFEEGWKV FQEENFLGKE DYLVFKYDGA NIFKVVILEQ SSRCERTEAE EEDEVIEITD DEEHEEAEDD EDEGDDDDQY REMEEEHSAE YMRSQSHPRR ASKRLSATSY SPTVEGPHLE DYEFDPQMYI QPGNPNFEAK LFKNRPNELH VPKNVIKDSS LTFGEQITLS RCQCFQFEDT QRDELRDYHG LPQWTPIYSE VAKVSEWRDG RVCIKGWTSF CKKNKINKND ACICEIISGE DRIIRTIQVH VLGARNG // ID K7M5I9_SOYBN Unreviewed; 445 AA. AC K7M5I9; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH15281.1, ECO:0000313|EnsemblPlants:GLYMA14G08630.2}; GN Name=LOC100813851 {ECO:0000313|EnsemblPlants:GLYMA14G08630.2}; GN ORFNames=GLYMA_14G079100 {ECO:0000313|EMBL:KRH15281.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G08630.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G08630.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G08630.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH15281.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH15281.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA14G08630.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G08630.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH15281.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH15281.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000847; KRH15281.1; -; Genomic_DNA. DR RefSeq; XP_006595618.1; XM_006595555.2. DR UniGene; Gma.1879; -. DR EnsemblPlants; GLYMA14G08630.2; GLYMA14G08630.2; GLYMA14G08630. DR GeneID; 100813851; -. DR Gramene; GLYMA14G08630.2; GLYMA14G08630.2; GLYMA14G08630. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; K7M5I9; -. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000008827; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 347 404 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 347 404 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 445 AA; 49788 MW; 0361323172BE0A31 CRC64; MVGQNCDGCR SWEEDIYWSH FQFLHFVQFL HADYDQHLAL PKTFSDNLKK KLPENVTLKG PGGVMWNIGM TTRDDTLYFG HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGWSLCE KAGSYFVRKC GHTEIDHAGG SLNKKRDTDN DSLEEGNIPS NAGVECALHE KSAHVNGTKE PIDVPPETPP TENTFNAGVE SSGVEQFTPD GGVTLAAVPS ETANGKRIRN IVSAVKHVHT KRKGRPAKWH VRERTLDWVA ALEAEPVSAS RSGTYEVYKS NRRPVTDDET RKIESLAKAA CTDDSIYVVM KPTHVYKRFF VSIRGTWIGK HISPSSQDVI LRMGKGEWIA RYSYNNIRNN GGLTGGWKHF SLDSNLEEGD ACVFKPAGQI NNTFVIDMSI FRVVPETVPL TPMSRGTRTG TRTGTGRRGR KPATMKSIQT QLSSP // ID K7M5J0_SOYBN Unreviewed; 600 AA. AC K7M5J0; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH15287.1, ECO:0000313|EnsemblPlants:GLYMA14G08641.1}; GN Name=LOC100814386 {ECO:0000313|EnsemblPlants:GLYMA14G08641.1}; GN ORFNames=GLYMA_14G079200 {ECO:0000313|EMBL:KRH15287.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G08641.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G08641.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G08641.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH15287.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH15287.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA14G08641.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G08641.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH15287.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH15287.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000847; KRH15287.1; -; Genomic_DNA. DR RefSeq; XP_006595949.1; XM_006595886.2. DR EnsemblPlants; GLYMA14G08641.1; GLYMA14G08641.1; GLYMA14G08641. DR GeneID; 100814386; -. DR Gramene; GLYMA14G08641.1; GLYMA14G08641.1; GLYMA14G08641. DR KEGG; gmx:100814386; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR InParanoid; K7M5J0; -. DR OMA; FTGRKFR; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000008827; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 480 576 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 480 576 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 67299 MW; 5F56F8880E8254A0 CRC64; MGCDCGGKLN VRKPHFYEVY SSAFSSHRLR LPDGFVCYME GRAYGSVSLT GPSGNIWTVQ LIKQDNDLFF HHGWSTFVVD HRLECGELLV FRYEGHLHFT VQIFDKDACE KEAAFHSECS QSSSDFDNIK GQKRDRKENS SLHIVVDGVP KKMRGSTNEN QELELGVGKE LLLYDVVRPI SMFRENEETS KTCSANDVPV PFHMENSNED EEADILYRSG NDDHHYILSG VSLSNVSAHD EKKVAQSFIS SFPYFVRIMK SFNVSGSYTL NIPYQFSMAH LPNCKIKIIL HNLKGEHWTV NSVPTTRVHT SHTLCGGWMA FIRGNNIKVG DICIFELVRE CELRVRIAEV GKDGRDCQVG NVAMTRPSAG HAVSSKCMSM NPKVNSKCIR KVDLSDKKWS KIGQETILSI DLKKSSRASN TSKKMGLCPQ SKAAHKKLAA PRRHRVEDEL SSQAKAGLRM LFALDEQRVA QAFSSPFPSF VKIMKKFNVS GSYTLKIPYQ FSAAHLPTYK TEVTLRNSRG GCWTVNSVPD AKGRTVHTFC GGWMAFVRDN DINFGDTCIF ELVAQCEMQV YISGVGKEGL DHQNGHLKLT NRLANVPSTC // ID K7M7H1_SOYBN Unreviewed; 442 AA. AC K7M7H1; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G33730.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G33730.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G33730.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA14G33730.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G33730.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA14G33730.2; GLYMA14G33730.2; GLYMA14G33730. DR Gramene; GLYMA14G33730.2; GLYMA14G33730.2; GLYMA14G33730. DR eggNOG; ENOG410IJN8; Eukaryota. DR eggNOG; ENOG410ZJKK; LUCA. DR Proteomes; UP000008827; Chromosome 14. DR ExpressionAtlas; K7M7H1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 145 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 442 AA; 48764 MW; E1B67CB6EA761414 CRC64; MSPPQPRRVD PKIWRACAGA AVQIPKLHSR VYYFPQGHLE HASPSHYLNP LLRSLPFVPC HVSSLDFLAD PFSDEVFAKF LLTPLSQQPF PNDTTEARNE EEKDRENGVV SFSKILTPSD ANNGGGFSVP RYLALRHIYR GTPRRHLFTT GWSKFVNHKK LVAGDTVVFV KDSDGRVSVG IRRAARFAAA IETPQPPPAE REGFSRSATG RVTAEAVAAA AESAARNAPF EVVYYPRTGF ADFVVSAEVV EESMKCAWVG GMRVKIAMET EDSSRMTWFQ GTVSSACASE NGPWRMLQVN WDEPEVLQNA KRVSPWQGAR HDLFSPSSFS NFLNDKSYLY MGSGSFGNNP VQSLGTVTTE LNMSSSQSDD LSPHSQSSFH SFAREFAGTR NCDTKVASGS ILLFGKIIQP AESDLHDGDC MERDGSRGSN KLKTVEACYF SK // ID K7M884_SOYBN Unreviewed; 724 AA. AC K7M884; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH17186.1, ECO:0000313|EnsemblPlants:GLYMA14G38492.2}; GN Name=LOC100799429 {ECO:0000313|EnsemblPlants:GLYMA14G38492.2}; GN ORFNames=GLYMA_14G204400 {ECO:0000313|EMBL:KRH17186.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA14G38492.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA14G38492.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G38492.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH17186.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH17186.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA14G38492.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA14G38492.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH17186.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH17186.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000847; KRH17186.1; -; Genomic_DNA. DR EMBL; CM000847; KRH17187.1; -; Genomic_DNA. DR EMBL; CM000847; KRH17188.1; -; Genomic_DNA. DR RefSeq; XP_003544336.1; XM_003544288.3. DR RefSeq; XP_006596467.1; XM_006596404.2. DR EnsemblPlants; GLYMA14G38492.1; GLYMA14G38492.1; GLYMA14G38492. DR EnsemblPlants; GLYMA14G38492.2; GLYMA14G38492.2; GLYMA14G38492. DR EnsemblPlants; GLYMA14G38492.3; GLYMA14G38492.3; GLYMA14G38492. DR GeneID; 100799429; -. DR Gramene; GLYMA14G38492.1; GLYMA14G38492.1; GLYMA14G38492. DR Gramene; GLYMA14G38492.2; GLYMA14G38492.2; GLYMA14G38492. DR Gramene; GLYMA14G38492.3; GLYMA14G38492.3; GLYMA14G38492. DR KEGG; gmx:100799429; -. DR OMA; HIHSEDA; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008827; Chromosome 14. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 317 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 724 AA; 80491 MW; C35B768166716EA9 CRC64; MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLYQTGWREC SFCNKTVHCG CIVSSSMFEY LDYGGIGCAT CVKTSQLNLI RDTKNTIGSV RSIKNNARNR HTEHIDGRLL VDSAGKGNLM LLRRDVEASE SIRWPRAERD GIDSCIGPNR QEDRRFSNVV KLSGHSLNFT TLDHNRPTWE TQTMHKSSSL NMSLGTSSGN SVQPSALDIA ERRLEDKASF CPFPQGQRSL SISKSLMDGI TMNLEDSKGV ISQERVARPP ANGKPKNLLH FRYWPRITGQ ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK GNDWTFQFRF WPNNNSRMYV LEGVTPCIQA MQLNAGDIVT FSRIDPGGKF VMGYRRASDS MDTQVDASTF AHSNGFATKE ATFSGATANL HSGKSYPDLL QTRNGNGEPY LNGCSEHLRF GTGTADCLQT ENCEMVNNDL LQQTISVSEK TLNIAPKSKR LLTHNEDAVE LRITWEEAQD LLHPPPSTMP SVETIEDKEF EEFEEPPVFG KGTTINDPPS GSLSSASEKM SSMDLENIPV TSKDSKKRRI MEKLDSSAGA TTKHPRHCSG CTCILCIQPP SGKGRHKPTC TTVRRQFKTL MKRKKQRESD ATQNDQIHHS DEGDTHGASR EGAIASNLEN EGSLNRMDEL GTGQIDLNSH PDHE // ID K7MA85_SOYBN Unreviewed; 686 AA. AC K7MA85; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100810458 {ECO:0000313|EnsemblPlants:GLYMA15G08540.2}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA15G08540.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA15G08540.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G08540.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA15G08540.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G08540.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3847.GLYMA15G08540.2; -. DR EnsemblPlants; GLYMA15G08540.2; GLYMA15G08540.2; GLYMA15G08540. DR Gramene; GLYMA15G08540.2; GLYMA15G08540.2; GLYMA15G08540. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; K7MA85; -. DR OMA; NCDYNIN; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000008827; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 75228 MW; 7424033966276EF6 CRC64; MGLIDLNTTE DDEAAPLSAS SSHSGISTSA STLVVSPPPS VCLELWHACA GPLISLPKRG SVVVYLPQGH FEHVQDFPVN AFDIPPHVFC RVLDVKLHAE EGSDEVYCQV LLVPESEQVE HSLREGEIVA DGEEEDTGAT VKSTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGND GELRLGIRRA AQLKWAGSFA VPSGQQLNPA TLMDVVNALS TRCAFSVCYN PSLDCSYSVG MRFRMRFETE DAADRRFTGL IAGISDVDPV RWPGSKWRCL LVRWDDIEAA RHNRVSPWEI EPSGSASNSS NLMAAGLKRN RIEMTSAKLE FPNPNGIQTS DFGESLRFRK VLQGQEILGV NTPPFDGINA QSPWLYELGR CYPGSNCSGI PPTGNNIRVP HPASDFSCNG IGFSESFRFQ KVLQGQEILP SQPYGRALSI EEARANGRYG FYDGCQLLNS RNGWSAQMHD NASHLHASVT PAQVSSPSSV LMFQQAVNPV SNCDYNINKC NKEMEGRIHY QGLYTSEMKG RTLASSPSDD LIVSRRAPEG ASSIGMFDVH NQLGSSQLHE SVSALRSSQK LVSSCKSSCR LFGFSLTEDT HVANEEVSAS TITLPLKCIA VLSLES // ID K7MAG3_SOYBN Unreviewed; 898 AA. AC K7MAG3; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100796447 {ECO:0000313|EnsemblPlants:GLYMA15G09750.2}; GN ORFNames=GLYMA_15G091000 {ECO:0000313|EMBL:KRH11131.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA15G09750.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA15G09750.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G09750.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH11131.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH11131.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA15G09750.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G09750.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH11131.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH11131.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000848; KRH11131.1; -; Genomic_DNA. DR RefSeq; XP_006597509.1; XM_006597446.2. DR STRING; 3847.GLYMA15G09750.2; -. DR EnsemblPlants; GLYMA15G09750.2; GLYMA15G09750.2; GLYMA15G09750. DR GeneID; 100796447; -. DR Gramene; GLYMA15G09750.2; GLYMA15G09750.2; GLYMA15G09750. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; K7MAG3; -. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000008827; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 765 849 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 898 AA; 99690 MW; 8E789E6C241B352B CRC64; MRLSSADFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQNEA YLPAELGTAS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSSFP LRLKRPWPPG LPSFHAGMKD DDFGLNSPLL WLRDTDRGLQ SLNFQGIGVN PWMQPRFDPT VLNMQTDMYQ AAAAAAVQDM RSLDPSKQLS ASLLQFQQPQ NFPNRTAALM QAQMLQKSQP QQIFGNNQEN QHSPQSQPQT QAHLQQHLQH QHSFNSQHHH HQQQQQQQQV VDNQQISSAV STMSQLFSAP QPQSPPMQAI SSLCQNFSNS NGNSVTTIVS PLHSILGSFP QDETSHLLNL PRTSSWIPIQ NSSGWPSKRV AVDPLLSSGA SHCVLPQVDQ LGQPHSTMSL NAITLPPFPG RESSIDQEGS NDPQNHLLFG VNIDPSSLLM PNGMSSLKGV SGNNNSSTLP YQSSNYLNTT TGTDSSLNHG MTPNIGDSGF LHCPEDAGQG NPLNKTFVKV YKSGSFGRSL DITKFSSYHE LRGELARMFG LEGELEDPVR SGWQLVFVDR ENDVLLLGDG PWPEFVNSVW CIKILSPQEV QQMGNNGLEL LNSVPNQRLS NGICDDYVSR QDPRNLSTGI TTVGSLDY // ID K7MAG4_SOYBN Unreviewed; 897 AA. AC K7MAG4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100796447 {ECO:0000313|EnsemblPlants:GLYMA15G09750.3}; GN ORFNames=GLYMA_15G091000 {ECO:0000313|EMBL:KRH11130.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA15G09750.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA15G09750.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G09750.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH11130.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH11130.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA15G09750.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G09750.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH11130.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH11130.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000848; KRH11130.1; -; Genomic_DNA. DR RefSeq; XP_003546066.1; XM_003546018.3. DR EnsemblPlants; GLYMA15G09750.3; GLYMA15G09750.3; GLYMA15G09750. DR GeneID; 100796447; -. DR Gramene; GLYMA15G09750.3; GLYMA15G09750.3; GLYMA15G09750. DR KEGG; gmx:100796447; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000008827; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 764 848 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 897 AA; 99619 MW; 3AD77E365D59C699 CRC64; MRLSSADFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQNEA YLPAELGTAS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSSFP LRLKRPWPPG LPSFHGMKDD DFGLNSPLLW LRDTDRGLQS LNFQGIGVNP WMQPRFDPTV LNMQTDMYQA AAAAAVQDMR SLDPSKQLSA SLLQFQQPQN FPNRTAALMQ AQMLQKSQPQ QIFGNNQENQ HSPQSQPQTQ AHLQQHLQHQ HSFNSQHHHH QQQQQQQQVV DNQQISSAVS TMSQLFSAPQ PQSPPMQAIS SLCQNFSNSN GNSVTTIVSP LHSILGSFPQ DETSHLLNLP RTSSWIPIQN SSGWPSKRVA VDPLLSSGAS HCVLPQVDQL GQPHSTMSLN AITLPPFPGR ESSIDQEGSN DPQNHLLFGV NIDPSSLLMP NGMSSLKGVS GNNNSSTLPY QSSNYLNTTT GTDSSLNHGM TPNIGDSGFL HCPEDAGQGN PLNKTFVKVY KSGSFGRSLD ITKFSSYHEL RGELARMFGL EGELEDPVRS GWQLVFVDRE NDVLLLGDGP WPEFVNSVWC IKILSPQEVQ QMGNNGLELL NSVPNQRLSN GICDDYVSRQ DPRNLSTGIT TVGSLDY // ID K7MC63_SOYBN Unreviewed; 1122 AA. AC K7MC63; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100815277 {ECO:0000313|EnsemblPlants:GLYMA15G19980.2}; GN ORFNames=GLYMA_15G181000 {ECO:0000313|EMBL:KRH12587.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA15G19980.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA15G19980.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G19980.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH12587.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH12587.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA15G19980.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA15G19980.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH12587.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH12587.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000848; KRH12587.1; -; Genomic_DNA. DR EMBL; CM000848; KRH12588.1; -; Genomic_DNA. DR RefSeq; XP_003546519.1; XM_003546471.3. DR STRING; 3847.GLYMA15G19980.2; -. DR EnsemblPlants; GLYMA15G19980.2; GLYMA15G19980.2; GLYMA15G19980. DR EnsemblPlants; GLYMA15G19980.3; GLYMA15G19980.3; GLYMA15G19980. DR GeneID; 100815277; -. DR Gramene; GLYMA15G19980.2; GLYMA15G19980.2; GLYMA15G19980. DR Gramene; GLYMA15G19980.3; GLYMA15G19980.3; GLYMA15G19980. DR KEGG; gmx:100815277; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; GTDMESA; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000008827; Chromosome 15. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 995 1088 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 678 699 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1122 AA; 125284 MW; 8E6F8112452C9720 CRC64; MKAPPSGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPSA KYNKALYNHA SLGMRFRMMF ETEESGVRRY MGTITGITDV DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKEPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN QVNQLQQSPT SWPPQQQQQQ QKLQSMLQTP LNPLQQQQQQ RQQQLPVPQN LSQPQQQQPQ MPQQRAQQPQ QQQQQSCQQT IMSNGTVASN QIPNQCVQQP VTYSQLQQQQ LLSGSIPPQQ SFQSPNKNAL LMTSLPQDSQ FQQQIDQQAS LLQRQQQQQT QLQSSPLQLL QQSLSQRASQ QPQMTQMCQQ NSSEQQPQLQ LLQKLQQQQQ QQQQQQQQQL LSTSSPLLQS QLLHQQNTHQ QNQQLPQLPL SQGHQPQQLG NNAFSMEKLL NGNNYSTSSL MQTQQLSVNQ PHNTQKSLTN TRAPSTLTDG DAPSCSTSPS TNNCQISPNL MKRNQHVPAT LGGPSVLEPT NHLMQGLHSK SEMQIKHELP SVRGTDQLKF KGTVADQMEA SSGTSYCIDP NNIHQNFPLP NFCMDGDVQS NPRNNLPFAS NLDGLTPDTF LSRGYDSQKD LQNLLSNYGG APRDIETELS TAALSPQPFG VPGIPFKPGC SSDIAINDPG VLNNGLWANQ TQRMRTYTKV QKCGSVGRCI DVTRYKGYDE LRHDLARMFG IEGQLEDPQR TEWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSAEV QKMSLDGDLG HVPVPNQACS GTDNGNAWRG QYEDNSAASF NR // ID K7MEN3_SOYBN Unreviewed; 582 AA. AC K7MEN3; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH06334.1, ECO:0000313|EnsemblPlants:GLYMA16G01951.1}; GN Name=LOC100781424 {ECO:0000313|EnsemblPlants:GLYMA16G01951.1}; GN ORFNames=GLYMA_16G017100 {ECO:0000313|EMBL:KRH06334.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA16G01951.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA16G01951.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G01951.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH06334.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06334.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA16G01951.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G01951.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH06334.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06334.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000849; KRH06334.1; -; Genomic_DNA. DR RefSeq; XP_014624616.1; XM_014769130.1. DR RefSeq; XP_014624617.1; XM_014769131.1. DR RefSeq; XP_014624618.1; XM_014769132.1. DR EnsemblPlants; GLYMA16G01951.1; GLYMA16G01951.1; GLYMA16G01951. DR GeneID; 100781424; -. DR Gramene; GLYMA16G01951.1; GLYMA16G01951.1; GLYMA16G01951. DR KEGG; gmx:100781424; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; K7MEN3; -. DR OMA; IRWGGAN; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000008827; Chromosome 16. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 195 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 195 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 582 AA; 65551 MW; 0A68257230EBF2DA CRC64; MELMQEVKGY SDSREEEEEE EGAAEEESSR KHHYYPFSSS PSNLYLSSSS APSISSNYTS TTTSAVARPL HHHHVINIPY QQNPWLGMNI VHHDHLIQSP ESHNSSSGLG LLHQHQDAAG SNFIINNNQH HQHHHTTKQL DFMDLSLGSS KDEGNLPGSS SSVYAHHHAA SGSSSVNGNN NLQQQQQPAE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSANEK GLLLNFEDRN GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGESYRH RLYIDWKRRR DHHHHHHHGP VDPSTTLFTP FFLPNQPHHL MSIRWGATDR LYSLPSPTPP RHHDHLQHQQ PLNYNNNTMY HPFHHHGGGS GINGTTHHYN NYYHEMSSTT NTTTSGSGSV FYLRSTPPSM PLADHQTLNT RQQQQQQQQQ QQQEGGGNVS LPPMIIDSVP VAHHLHHHHH QHQHQHQHHG GKSSGSSSPS TAGKRLRLFG VNMECASSTT SEDHPKCFSL LSSSSSMANS NSSLPPLQLL REDTLSSSAA AAARFGDQRG GVGEPSTSIF FDLDPSLQYR KR // ID K7MEN5_SOYBN Unreviewed; 502 AA. AC K7MEN5; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH06331.1, ECO:0000313|EnsemblPlants:GLYMA16G01951.3}; GN Name=LOC100781424 {ECO:0000313|EnsemblPlants:GLYMA16G01951.3}; GN ORFNames=GLYMA_16G017100 {ECO:0000313|EMBL:KRH06331.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA16G01951.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA16G01951.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G01951.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH06331.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06331.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA16G01951.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G01951.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH06331.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06331.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000849; KRH06331.1; -; Genomic_DNA. DR EMBL; CM000849; KRH06332.1; -; Genomic_DNA. DR EMBL; CM000849; KRH06333.1; -; Genomic_DNA. DR RefSeq; XP_014624619.1; XM_014769133.1. DR EnsemblPlants; GLYMA16G01951.2; GLYMA16G01951.2; GLYMA16G01951. DR EnsemblPlants; GLYMA16G01951.3; GLYMA16G01951.3; GLYMA16G01951. DR GeneID; 100781424; -. DR Gramene; GLYMA16G01951.2; GLYMA16G01951.2; GLYMA16G01951. DR Gramene; GLYMA16G01951.3; GLYMA16G01951.3; GLYMA16G01951. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR Proteomes; UP000008827; Chromosome 16. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 7 34 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 502 AA; 56723 MW; 49E6D383AC1E5DAD CRC64; MELMQEVKGY SDSREEEEEE EGAAEEESSR LLHQHQDAAG SNFIINNNQH HQHHHTTKQL DFMDLSLGSS KDEGNLPGSS SSVYAHHHAA SGSSSVNGNN NLQQQQQPAE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSANEK GLLLNFEDRN GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGESYRH RLYIDWKRRR DHHHHHHHGP VDPSTTLFTP FFLPNQPHHL MSIRWGATDR LYSLPSPTPP RHHDHLQHQQ PLNYNNNTMY HPFHHHGGGS GINGTTHHYN NYYHEMSSTT NTTTSGSGSV FYLRSTPPSM PLADHQTLNT RQQQQQQQQQ QQQEGGGNVS LPPMIIDSVP VAHHLHHHHH QHQHQHQHHG GKSSGSSSPS TAGKRLRLFG VNMECASSTT SEDHPKCFSL LSSSSSMANS NSSLPPLQLL REDTLSSSAA AAARFGDQRG GVGEPSTSIF FDLDPSLQYR KR // ID K7MET6_SOYBN Unreviewed; 716 AA. AC K7MET6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100795763 {ECO:0000313|EnsemblPlants:GLYMA16G02650.2}; GN ORFNames=GLYMA_16G023600 {ECO:0000313|EMBL:KRH06451.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA16G02650.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA16G02650.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G02650.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH06451.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06451.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA16G02650.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G02650.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH06451.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06451.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000849; KRH06451.1; -; Genomic_DNA. DR RefSeq; XP_006598900.1; XM_006598837.2. DR STRING; 3847.GLYMA16G02650.2; -. DR EnsemblPlants; GLYMA16G02650.2; GLYMA16G02650.2; GLYMA16G02650. DR GeneID; 100795763; -. DR Gramene; GLYMA16G02650.2; GLYMA16G02650.2; GLYMA16G02650. DR KEGG; gmx:100795763; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; K7MET6; -. DR KO; K14486; -. DR OMA; ISVNKYM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 16. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 677 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 79454 MW; DC18899A50DCCDDD CRC64; MAHLGCCNLG GPGSSGTSLP EKGLKDDDLY RELWKLCAGP LVDVPRTGDR VFYFPQGHME QLQASTDQEL NQEIPHFNLP AKIFCRVVNI QLLAEQDTDE VYACIALLPE SDQTEPTNPD PNISEPPKQK FHSFCKILTA SDTSTHGGFS VLRKHATECL PALDMTQATP TQELAAKDLH GFEWKFKHIY RGQPRRHLLT TGWSTFVASK RLVAGDAFVF LRGEHGQLRV GVRRLARQQS PMPSSVISSQ SMHLGVLATA SHAVMTRTMF LVYYKPRTSQ FIVGLNKYLE AVNNKFSLGM RFKMRFEGDD SPERRFSGTI VGVGDVSAGW SNSQWRSLKV QWDEPATIPR PDRVSCWEIE PFVASTALNV TQPAVKGKRS RPADVSSSAA SGFWYHGSSN ELSQLGAATA EVQSKENQVV PCSLRQKDII NSNPIDANNS SISSRVRMEG VWPSSPHLNV TPNLFSDPNN NSVLARSPIS GYLNVPSRSS DGPTCEHVED GKKIENSLDC WLFGVNLTNN CSNVIITTPS ERELRGPISS SVAPSGPKES IPAAACETER VQTPNYSLSN KGQKQIISEA SPNEWQNKQA TVPSMRTRTK VQMQGVAVGR AFDLTTLSGY DDLIEELEKL FEIRGELHSQ DKWAVTFTDD ENDMMLVGDD PWPEFCNMVK RIFICSREDL KKMKCCKLPA SSSEVEEVLL SPDSQNRDET QQSHMP // ID K7MFA4_SOYBN Unreviewed; 338 AA. AC K7MFA4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH06856.1, ECO:0000313|EnsemblPlants:GLYMA16G05480.2}; GN Name=LOC100783961 {ECO:0000313|EnsemblPlants:GLYMA16G05480.2}; GN ORFNames=GLYMA_16G050300 {ECO:0000313|EMBL:KRH06856.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA16G05480.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA16G05480.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G05480.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH06856.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06856.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA16G05480.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA16G05480.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH06856.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH06856.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000849; KRH06856.1; -; Genomic_DNA. DR RefSeq; XP_003548926.1; XM_003548878.3. DR STRING; 3847.GLYMA16G05480.2; -. DR EnsemblPlants; GLYMA16G05480.2; GLYMA16G05480.2; GLYMA16G05480. DR GeneID; 100783961; -. DR Gramene; GLYMA16G05480.2; GLYMA16G05480.2; GLYMA16G05480. DR KEGG; gmx:100783961; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; K7MFA4; -. DR OMA; VHRKKRM; -. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000008827; Chromosome 16. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38074 MW; 93F48D1E0954146D CRC64; MMMDPRQREK LLHKTEACAF VAGVVPELSL VTVPGNNNNT NNVNNNNNNV SHSQSHRSGR IHENHHHHHL GLVAAVTTTF GTVHRKKRMA RQRRSTNPTL LMNPLINNNN NKSGSSLPSP STASSSHVPL SSSTLPPARE IDQRRLRFLF QKELKNSDVS SLRRMILPKK AAEAFLPALE SKEGIVISMD DIDGLHVWSF KYRFWPNNNS RMYVLENTGD FVNTHGLRFG DSILVYQDSE NNNYVIQAKK ASDQDEFMEE TSDTINDIFL NDYEVNKPGC FNVTYPAVND TGMSFIYETT FSNDSPLDFL GGSMTNFSRI GPVETFGSVE NLSLDDFY // ID K7MM66_SOYBN Unreviewed; 480 AA. AC K7MM66; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH04629.1, ECO:0000313|EnsemblPlants:GLYMA17G20175.1}; GN Name=LOC100819237 {ECO:0000313|EnsemblPlants:GLYMA17G20175.1}; GN ORFNames=GLYMA_17G175500 {ECO:0000313|EMBL:KRH04629.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA17G20175.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA17G20175.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G20175.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH04629.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH04629.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA17G20175.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G20175.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH04629.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH04629.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000850; KRH04629.1; -; Genomic_DNA. DR RefSeq; XP_003551033.1; XM_003550985.3. DR EnsemblPlants; GLYMA17G20175.1; GLYMA17G20175.1; GLYMA17G20175. DR GeneID; 100819237; -. DR Gramene; GLYMA17G20175.1; GLYMA17G20175.1; GLYMA17G20175. DR KEGG; gmx:100819237; -. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR InParanoid; K7MM66; -. DR OMA; FWMGLPV; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000008827; Chromosome 17. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 423 450 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 480 AA; 54329 MW; A2035CCD53469D4A CRC64; MVVIDEKNRV IRRDMVELSQ HDQSVTVAYY GEELHGGVPL PRFSRMSPLN TDRQNKGMEN KYKLLNSPVK QATPAEAQKF ASSIKVATEG TSSRGQAMSS AVLQAEEVQS NLEREFPSFV KSLVRSHVAS CFWMGLPVSF CKRHLPDKDT TFILEDESGK EYMTKYIACK TGLSAGWRQF SAVHKLHEGD VVVFQLVEPT KFKVYIIRAN NTRELDGAFL SLDSCIKQKM GGNDNADSDD VACNNSKRKH GKSVQQDVQT KKKASASRLR PKARPSVEQS ENDSEEALSE VMEGFKMLEF NDVKGFENFS IIVDGVPIDA EFSTEVRNKY YRLCCSQHAF LHENLIKGMN YKLIAGIILE TVNIADAIEV SVICTPRAEF SNWDKTLLAF EHLGMDVEFL RVRLRRLARI AYEKDDASET KKHLAYRNEY SRADDEIKNM EAKLEELKGA CNGFGAYLES LKCRAESNHI KFQKEVVAPW // ID K7MNS2_SOYBN Unreviewed; 562 AA. AC K7MNS2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRH05746.1, ECO:0000313|EnsemblPlants:GLYMA17G36471.1}; GN Name=LOC100804621 {ECO:0000313|EnsemblPlants:GLYMA17G36471.1}; GN ORFNames=GLYMA_17G245900 {ECO:0000313|EMBL:KRH05746.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA17G36471.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA17G36471.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G36471.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRH05746.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH05746.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA17G36471.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G36471.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRH05746.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH05746.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000850; KRH05746.1; -; Genomic_DNA. DR RefSeq; XP_003549416.2; XM_003549368.3. DR EnsemblPlants; GLYMA17G36471.1; GLYMA17G36471.1; GLYMA17G36471. DR GeneID; 100804621; -. DR Gramene; GLYMA17G36471.1; GLYMA17G36471.1; GLYMA17G36471. DR KEGG; gmx:100804621; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR InParanoid; K7MNS2; -. DR OMA; GITITMG; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000008827; Chromosome 17. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 217 313 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 442 538 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 217 313 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 442 538 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 562 AA; 63251 MW; DF6ADBA7B86011AC CRC64; MMRKPHFYEV YSSAFSSHRL KLPDGFVCHM EGRTYGSVSL TGPSGKTWTV QLIKQENDLF LHHGWSTFVV DHQLECGELL VFRYEGHLHF TVQVFDKDAC EKEAAFHSEC SQSSKIMSTN ENQELELGVG KELLRYEIVR PISMFRENEE TSKACSANDV PVPFHMDNSK EDEETAILYR SGKDDHRYIL SGVSLSNVSA HDEKKVSQSF ISSFPYFVRI MKSFNVSGSY TLNIPYQFSM AHLPNCKIKI ILHNLKGEHW TVNSVPTTRV HTSHTLCGGW MAFVRGNNIK VGDICIFELV HECELRVRIA EVAKDGSDCQ VGNLAITRPS AGHAVTSRCM PMNPKVNSKC IRKVDLSDKK WSKIGQETIL SIDLKKSSRA SNTSKKMGLC PQSKAAHKKL AAPRRHRVDD ELSSQAKAGL RMLFALDEQR VAQAFTSPFP SFVKIMKKFN VSGSYTLKIP YQFSAAHLPT YKTEVTLRNS RGECWTVNSV PDAKGRTVHT FCGGWMAFVR DNDINFGDTC IFELVAQCEM HVYISGVGKE GLDHQNGHLK LTNRLANVPS TC // ID K7MNS4_SOYBN Unreviewed; 547 AA. AC K7MNS4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G36490.2}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA17G36490.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA17G36490.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G36490.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA17G36490.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA17G36490.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA17G36490.2; GLYMA17G36490.2; GLYMA17G36490. DR Gramene; GLYMA17G36490.2; GLYMA17G36490.2; GLYMA17G36490. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; K7MNS4; -. DR OMA; FWTHFQS; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000008827; Chromosome 17. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 457 514 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 457 514 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 547 AA; 60988 MW; CFC3F7E5AC5866D2 CRC64; MTPLKSPYGS QVSFSFLSLS SSPSQTTIAT NKLRFSDMRN CYRTIASPWL SKKQQTTDLG PMAHCDFSSF YFTVLSGFVY SVLNSQCSTL SQTTKFCNFF SSLIVVGEMV GQNCGGCRSW EEDIYWSHFQ FLHFVQFLRA DYDQHLALPK AFSDNLKKKL PENVTLKGPG GVVWNIGMTT RDDTLYFVHG WEQFVKDHCL KENDFLVFKY NGESQFDVLI FNGGSLCEKA GSYFVRKCGH TGIEHAGGSL NKKRDTDNNS LEEGNIPPSN AGVECALHEK SVHANGTKEP IDVPPETPPT EKTFNAGVES SGVEQFTPDG GVTLVAVPSE TANGKRIRNI VSAVKHVQTK RRGRPAKVHV RERTLDWVAA LEASEPISTS RSGTYEVYKS NRRPVTDDET KMIESLAKAA CTEDSIYVVM KPSHVYKRFF VSMRGTWIGK HISPSSQDVI LRMGKGEWIA RYSYNNIRNN GGLTGGWKHF SLDNNLEEGD ACVFKPAGQM NNTFVIDMSI FRVVPETVPL TPMSRGTGRR GRKQATMKSI QTQLSPP // ID K7MQ27_SOYBN Unreviewed; 935 AA. AC K7MQ27; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG98129.1, ECO:0000313|EnsemblPlants:GLYMA18G05840.2}; GN Name=LOC100789147 {ECO:0000313|EnsemblPlants:GLYMA18G05840.2}; GN ORFNames=GLYMA_18G052100 {ECO:0000313|EMBL:KRG98129.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G05840.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G05840.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G05840.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG98129.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98129.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA18G05840.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G05840.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG98129.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98129.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000851; KRG98129.1; -; Genomic_DNA. DR EMBL; CM000851; KRG98130.1; -; Genomic_DNA. DR STRING; 3847.GLYMA18G05840.2; -. DR EnsemblPlants; GLYMA18G05840.2; GLYMA18G05840.2; GLYMA18G05840. DR Gramene; GLYMA18G05840.2; GLYMA18G05840.2; GLYMA18G05840. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; K7MQ27; -. DR OMA; CNKPIHC; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 624 674 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 935 AA; 103150 MW; D8903F4ED1278658 CRC64; MGSNICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDPFST IPDKVLNCGC GCGFVAIIDI AGKCRSAYEN SVFCNKFHCQ QTGWRECNFC NKPIHCGCIV SRSLFEYLDF GGIGCVSCVN TTQLSMMRNM ENPNVTVLSI KNNAGDRHSA HFDGRLPVGG VDEGKLMQFC KIIEASESSR WNHAQRDGII AHRGQKNQEA KSSFREVEIG FSNVMNPSVQ SLTFATLENN RSTWEIKNMH ESNTKPSLSM YLGNASGNNS VPPSAGEAVE GRLDGKTSPP FQGSRSIFPK PLKNGLTMNM ETNKGTMSQS RVARPPADGR GKNQLLPRYW PRITDEELER LAGDLKSTVV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQSEGVPL RMQDVKGNEW TFQFRFWPNN NSRMYVLEGV TPCIQAMQLC AGDTVTFSRI DPGGKLVMGF RKASNSTDTQ DASTSAQSNS AKGTVSSGTE NLPSGSNNAD LLHSLTGNVE CHLNGHTEHL HLGTGTAGLL KTENNEMTNS SSPQQQISVL EKKRTRNIGP KSKRLLIDNE DAMELKLTWE EAQDLLRPPP SVKPSIVTIE DQVIEEYDEP PVFGKRTIFS ACSSGGKEQW AQCDDCSKWR KLPVDALLPP KWTCCENVWD SSRCSCSAPE ELSSREIENL LKNNKDFKKR RIVESSKSIQ EHEPSGLDAL ASAAVLGENL IDTAESSAGV TTKHPRHRPG CSCIVCIQPP SGKGRHKPTC TCNVCMTVKR RFKTLMLRKK KRQSEREADA AQKDQTLPKD ELDTNGASRD DTSQLEKEAG LKSQHEVGGS SAGQIDLNSH PNREDMQVET TGLNMSSHLE PATNHTVGEF MNQNGLRNFN NEVQTGQNSS LHTPKSNGEG QRYFSDGRCF ASIMWNQERK DEVHSQTNQS QNNLS // ID K7MQ28_SOYBN Unreviewed; 908 AA. AC K7MQ28; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG98131.1, ECO:0000313|EnsemblPlants:GLYMA18G05840.3}; GN Name=LOC100789147 {ECO:0000313|EnsemblPlants:GLYMA18G05840.3}; GN ORFNames=GLYMA_18G052100 {ECO:0000313|EMBL:KRG98131.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G05840.3, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G05840.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G05840.3}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG98131.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98131.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA18G05840.3} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G05840.3}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG98131.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98131.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000851; KRG98131.1; -; Genomic_DNA. DR EMBL; CM000851; KRG98132.1; -; Genomic_DNA. DR EMBL; CM000851; KRG98133.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA18G05840.3; GLYMA18G05840.3; GLYMA18G05840. DR Gramene; GLYMA18G05840.3; GLYMA18G05840.3; GLYMA18G05840. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 597 647 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100380 MW; 43C2D96923FC9777 CRC64; MGSNICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDPLSA YENSVFCNKF HCQQTGWREC NFCNKPIHCG CIVSRSLFEY LDFGGIGCVS CVNTTQLSMM RNMENPNVTV LSIKNNAGDR HSAHFDGRLP VGGVDEGKLM QFCKIIEASE SSRWNHAQRD GIIAHRGQKN QEAKSSFREV EIGFSNVMNP SVQSLTFATL ENNRSTWEIK NMHESNTKPS LSMYLGNASG NNSVPPSAGE AVEGRLDGKT SPPFQGSRSI FPKPLKNGLT MNMETNKGTM SQSRVARPPA DGRGKNQLLP RYWPRITDEE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQAM QLCAGDTVTF SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNSAKGTVSS GTENLPSGSN NADLLHSLTG NVECHLNGHT EHLHLGTGTA GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI DNEDAMELKL TWEEAQDLLR PPPSVKPSIV TIEDQVIEEY DEPPVFGKRT IFSACSSGGK EQWAQCDDCS KWRKLPVDAL LPPKWTCCEN VWDSSRCSCS APEELSSREI ENLLKNNKDF KKRRIVESSK SIQEHEPSGL DALASAAVLG ENLIDTAESS AGVTTKHPRH RPGCSCIVCI QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADAAQKDQTL PKDELDTNGA SRDDTSQLEK EAGLKSQHEV GGSSAGQIDL NSHPNREDMQ VETTGLNMSS HLEPATNHTV GEFMNQNGLR NFNNEVQTGQ NSSLHTPKSN GEGQRYFSDG RCFASIMWNQ ERKDEVHSQT NQSQNNLS // ID K7MQK8_SOYBN Unreviewed; 116 AA. AC K7MQK8; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG98540.1, ECO:0000313|EnsemblPlants:GLYMA18G08885.1}; GN ORFNames=GLYMA_18G079800 {ECO:0000313|EMBL:KRG98540.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G08885.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G08885.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G08885.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG98540.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98540.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA18G08885.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G08885.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG98540.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG98540.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000851; KRG98540.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA18G08885.1; GLYMA18G08885.1; GLYMA18G08885. DR Gramene; GLYMA18G08885.1; GLYMA18G08885.1; GLYMA18G08885. DR InParanoid; K7MQK8; -. DR OMA; HYLVFKF; -. DR OrthoDB; EOG09360QUN; -. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 104 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 116 AA; 13529 MW; 6FD185F9C5114FEE CRC64; MKKTDIGIKK LLTKSDLGNL SRLLLPKKSI EDLVLPVLSG TKITIWDVDT QSMHYLVFKF WVSSRSYVFI DNWTKEFVNR RSLQINDEIG FHWNSYKNQF DFSVLARASS ARDQTP // ID K7MQX5_SOYBN Unreviewed; 77 AA. AC K7MQX5; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 14. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G11274.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G11274.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G11274.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G11274.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA18G11274.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G11274.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA18G11274.1; GLYMA18G11274.1; GLYMA18G11274. DR Gramene; GLYMA18G11274.1; GLYMA18G11274.1; GLYMA18G11274. DR InParanoid; K7MQX5; -. DR OMA; RRVSEDC; -. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 76 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 77 AA; 9105 MW; D87F198B69662B30 CRC64; MKREMKPHLQ SQPLTCFAKL LQPDTSTHGG FSVPRRVSED CFPRLDYKQQ RPSQELVAKD LHGVEWNFRH IYRGQPR // ID K7MSG4_SOYBN Unreviewed; 344 AA. AC K7MSG4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG99575.1, ECO:0000313|EnsemblPlants:GLYMA18G30790.1}; GN Name=LOC100819782 {ECO:0000313|EnsemblPlants:GLYMA18G30790.1}; GN ORFNames=GLYMA_18G155000 {ECO:0000313|EMBL:KRG99575.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G30790.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G30790.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G30790.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG99575.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG99575.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA18G30790.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G30790.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG99575.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG99575.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000851; KRG99575.1; -; Genomic_DNA. DR RefSeq; XP_003551329.1; XM_003551281.3. DR EnsemblPlants; GLYMA18G30790.1; GLYMA18G30790.1; GLYMA18G30790. DR GeneID; 100819782; -. DR Gramene; GLYMA18G30790.1; GLYMA18G30790.1; GLYMA18G30790. DR KEGG; gmx:100819782; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K7MSG4; -. DR OMA; RTHISSH; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 39761 MW; CFB3323663B6D433 CRC64; MAATFPQQLL VKPIHFFKII TAHNVHEGKL MIPNKFVKKY GKRLQNTLFL KTPNGAEWKM ILKKRDGKIW FQKGWKEFAE YHSLAHGHLL VFRWDVTSHF QVHIFDLSAL EIEYPTEIIK GKTASNRKGN ESPGDEHLEC HRSGQKRKVN SVEFLQQCQM RSRKCVKVEN TMILPRQALH HTATKCKGKS KAMDNQVTAL DRASSFKSCN PFFLTVMHRT HISSHGSLNL PMKFCRSHLD LHKKRRLISL QVLSGRIWPA KYQIHKQKTA IRFKLSWNAF VKDNNLKVGD VCIFELVHGT KLTFLVHIFR ETDSSNCSTS QESGQMRAAC QSQRKELKTI TATK // ID K7MSZ4_SOYBN Unreviewed; 731 AA. AC K7MSZ4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG99862.1, ECO:0000313|EnsemblPlants:GLYMA18G38490.2}; GN Name=LOC100810343 {ECO:0000313|EnsemblPlants:GLYMA18G38490.2}; GN ORFNames=GLYMA_18G176100 {ECO:0000313|EMBL:KRG99862.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA18G38490.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA18G38490.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G38490.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG99862.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG99862.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA18G38490.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA18G38490.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG99862.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG99862.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000851; KRG99862.1; -; Genomic_DNA. DR STRING; 3847.GLYMA18G38490.2; -. DR EnsemblPlants; GLYMA18G38490.2; GLYMA18G38490.2; GLYMA18G38490. DR Gramene; GLYMA18G38490.2; GLYMA18G38490.2; GLYMA18G38490. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; K7MSZ4; -. DR OMA; EIWLDDH; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000008827; Chromosome 18. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 577 679 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 577 679 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 731 AA; 80825 MW; F04CD88896BA00CA CRC64; MENEHTLAVA EREMWLNSDQ DEFLGVNDAS MFYADFPPLP DFPCMSSSSS SSSALPFPVK TMTCSTRTTT TTTTSSSSSS SSWAVLKSDA EEDAEKNHCN RYMHDQLDAT LSSTASMEVS QQKNLDPGLG GPVGECMDDV MDTFGYMELL EANDFFDPAS IFQNEDNENP LVDFGTLEQH VPLHDEQHEM LHHQQGRTEE VDHQVPVCEE IQGDEEGGDG VGVDDEMSNV FLEWLKSNKD SVSANDLRNV KLKKATIESA ARRLGGGKEA MKQLLKLILE WVQTSHLQNK RRKENNGSSI SSALQAQFPD PSVQNNQNTQ SGSFSPESNA CFNNQTPWLS PQTFATDQAP LMVPPQQFQQ PMVGYVGDPY TSGAASNNIT TSHNHNSNNP YQPGAEQYHM LESAHSWPHS QFNVACHYSQ SFGDNNGIFP HGGFGGGYGN NQYPYQFFHG PGDTLMRLGP SATKEARKKR MARQRRFLSH HRHHNGNYQN SGSDPHARLG GGDNCTTGLA APHHANPTAN WMYWQAMTGG AAGPLAPPAE PPAVDRSALQ TQNCHQSRVA SDRRQGWKPE KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE THLPELEARD GISITMEDIG TSRVWNMRYR YWPNNKSRMY LLENTGDFVR ANGLQEGDFI VIYSDVKCGK YMIRGVKVRQ QGVKPETKKV GKSQKNQHGT GTNASTTACT AANNGTPSSP KTKAEKSSKL I // ID K7MXL6_SOYBN Unreviewed; 332 AA. AC K7MXL6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG94672.1, ECO:0000313|EnsemblPlants:GLYMA19G27336.1}; GN Name=LOC100813055 {ECO:0000313|EnsemblPlants:GLYMA19G27336.1}; GN ORFNames=GLYMA_19G100900 {ECO:0000313|EMBL:KRG94672.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA19G27336.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA19G27336.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G27336.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG94672.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG94672.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA19G27336.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G27336.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG94672.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG94672.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000852; KRG94672.1; -; Genomic_DNA. DR RefSeq; XP_003553973.1; XM_003553925.3. DR STRING; 3847.GLYMA19G27336.1; -. DR EnsemblPlants; GLYMA19G27336.1; GLYMA19G27336.1; GLYMA19G27336. DR GeneID; 100813055; -. DR Gramene; GLYMA19G27336.1; GLYMA19G27336.1; GLYMA19G27336. DR KEGG; gmx:100813055; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; K7MXL6; -. DR OMA; IPIRMED; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000008827; Chromosome 19. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 144 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 37401 MW; 27F2CEEF1C6399B0 CRC64; MMMDQRQREK LLHKTEACAF VAGVVPELSL VTVPGNNTNN VNNNNNVVSH SQSNGSGRIQ ENNHHLGLVA AVTSAFGTVQ RKKRMARQRR STKPTSLMNH LNNHKHNKPR SLPSPSASSS YVPLSSATLQ PAREIDQRRL RFLFQKELKN SDVSSLRRMI LPKKAAEAFL PALESKEGIV ISMDDIDGLH VWSFKYRFWP NNNSRMYVLE NTGDFVNTHG LRFGDSIMVY QDSENNNYVI QAKKASDQDE FMEETSDTIN DIFLNDYEVN KPGCFNVTNP AVNDTGMSFI YETTFSNDSP LDFLGGSMTN FSRIGPVETF GSVENLSLDD FY // ID K7MXP4_SOYBN Unreviewed; 217 AA. AC K7MXP4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G27955.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA19G27955.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA19G27955.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G27955.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA19G27955.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G27955.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA19G27955.1; GLYMA19G27955.1; GLYMA19G27955. DR Gramene; GLYMA19G27955.1; GLYMA19G27955.1; GLYMA19G27955. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K7MXP4; -. DR OMA; ANKHILA; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 19. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 165 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 165 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 25188 MW; B807EF834669A359 CRC64; MASTFPHQLQ VKPIHFFKII TAQNLQDGKL MIPNKYVDKY GEGLPNSLFL KTPNGTEWNF NLKKRDGKIW FQKGWKEFAE YHSLAHGHLL VFRRHRTSHF QVHIFDLSAL EIHYPSKGRE GKMSPNHQGN NPRNEENLEY HKPGQKRKDN TSLKFLQPYI SNEKLTSGWK AFVKDNNLKV GNVCTFELID GTKLTFLVHI FKGTKSSNCS TSQENRC // ID K7MZ14_SOYBN Unreviewed; 700 AA. AC K7MZ14; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=LOC100791442 {ECO:0000313|EnsemblPlants:GLYMA19G36571.1}; GN ORFNames=GLYMA_19G181900 {ECO:0000313|EMBL:KRG95987.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA19G36571.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA19G36571.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G36571.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG95987.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG95987.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA19G36571.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G36571.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG95987.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG95987.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000852; KRG95987.1; -; Genomic_DNA. DR RefSeq; XP_006604575.1; XM_006604512.2. DR STRING; 3847.GLYMA19G36571.1; -. DR EnsemblPlants; GLYMA19G36571.1; GLYMA19G36571.1; GLYMA19G36571. DR GeneID; 100791442; -. DR Gramene; GLYMA19G36571.1; GLYMA19G36571.1; GLYMA19G36571. DR KEGG; gmx:100791442; -. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; K7MZ14; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000008827; Chromosome 19. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 614 694 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 77789 MW; 3B55B015F7AEF0A2 CRC64; MLFQEFAVRT GYCMMESKEK LKEVEKCLDS RLWHACAGGM VQMPVVNAKV FYFPQGHAEH ACGPVDFRVY PKIPPFIQCK VGAIKYMADP ETDEVYVKLR LVPLTRNEGD FEDDAVGGIN GSENKDKSPS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQN ILAKDVHGET WKFRHIYRGT PRRHLLTTGW SSFVNHKKLV AGDSIVFLRA EKDDLRVGIR RAKRGIGIGG GPEAPAGWNS GGGIRPMPYG GFSAFLREED SQLLRNGLSP NAKGKVRPEA VIEAATLAAN MQPFEVVYYP RASAPEFCVK ANLVRAALQV RWCPGMRFKM PFETEDSSRI SWFMGTISSV NFADPRWPNS PWRLLQVTWD EPELLQNVKR VSPWLVEIVS NMPTIHLSHY STQQKKPRFP QHPDFSFDGQ ISLPAFPSNF LGPSNPFGCL AESTPAGIQG ARHANYGISL SNLHFNKLQS GLFQAGFPPL DHTASPVLRV SSNNAATMQK VGTGDNVSCL LSMSTATQPS KKVDDVKAPQ LVLFGQTILT EQQISLNTSA KTDPTRNNSF DGNADKMCKF SDGFGYALHP QGSSLERLQW YKDQQKETMA SLETGHCKVF MESEDIGRTM DLTMLGSYDE LYRKLADMFG IEKSVVLSHM LYRDTTGAVK HIGDEAFSEF TKTARRLTIL MDSNSDGRGI // ID K7MZA2_SOYBN Unreviewed; 299 AA. AC K7MZA2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG96220.1, ECO:0000313|EnsemblPlants:GLYMA19G38340.2}; GN Name=LOC100781153 {ECO:0000313|EnsemblPlants:GLYMA19G38340.2}; GN ORFNames=GLYMA_19G196600 {ECO:0000313|EMBL:KRG96220.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA19G38340.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA19G38340.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G38340.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG96220.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG96220.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA19G38340.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G38340.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG96220.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG96220.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000852; KRG96220.1; -; Genomic_DNA. DR RefSeq; XP_003553608.1; XM_003553560.3. DR EnsemblPlants; GLYMA19G38340.2; GLYMA19G38340.2; GLYMA19G38340. DR GeneID; 100781153; -. DR Gramene; GLYMA19G38340.2; GLYMA19G38340.2; GLYMA19G38340. DR KEGG; gmx:100781153; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; K7MZA2; -. DR OMA; LECEADD; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000008827; Chromosome 19. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 34108 MW; 8A51EF43339A3C8C CRC64; MSSIHHYSPE TTLYWTSDHQ QQQQQQQQQQ QQAATWLSNS HTPRFNLNED DDEEDDVVVS DKATNNLAQE QEKEAMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLDSSGG DSAAAKGLLL SFEDESGKCW RFRYSYWNSS QSYVLTKGWS RYVKDKRLHA GDVVLFHRHR AHPQRFFISC TRHQPNPNPP AHVSIRSSSY SALPAYPTHH HHHLPFPYQP HSLHAPGGGS QGQNETTPGG NSSSGRVLRL FGVNMECQPD NDNDSQNSTH ECSYTHLYHH QTSSYPSSNP HHHMLPQQP // ID K7MZF7_SOYBN Unreviewed; 677 AA. AC K7MZF7; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=GLYMA_19G206100 {ECO:0000313|EMBL:KRG96367.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA19G39340.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA19G39340.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G39340.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG96367.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG96367.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA19G39340.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA19G39340.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG96367.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG96367.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000852; KRG96367.1; -; Genomic_DNA. DR RefSeq; XP_006604696.1; XM_006604633.2. DR RefSeq; XP_006604697.1; XM_006604634.2. DR STRING; 3847.GLYMA19G39340.2; -. DR EnsemblPlants; GLYMA19G39340.2; GLYMA19G39340.2; GLYMA19G39340. DR GeneID; 100802387; -. DR Gramene; GLYMA19G39340.2; GLYMA19G39340.2; GLYMA19G39340. DR KEGG; gmx:100802387; -. DR eggNOG; ENOG410JAV5; Eukaryota. DR eggNOG; ENOG41113VQ; LUCA. DR KO; K14486; -. DR OMA; QCKNCCS; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000008827; Chromosome 19. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 660 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 677 AA; 75646 MW; 058595F3286941B6 CRC64; MRKRRDMDSP NTQQGLLPSK KGVKDSLYTE LWRACAGSFV YVPREEETVL YFPQGHLEQV AAYTQHQQDG HMEIPVYDLP SKILCKIMHI ELKAEAFSDE VYAQVTLVPA LKQDNLRLEV EENDQIPSIT TTYTFSKILT PSDTSTHGGF SVPKKHADEC FPPLDMTQQT PAQEIVAKDL NGFEWHFRHI YRGKPKRHLL TSGWSTFVNA KKLVAGDSCI FVRAESGEIR VGIRRATEHL SNVSQSSSLI SGHSMQLGIL ASASHAVSSG TMFIVYYHPW TNPFEFIVPL RTYLKSTVPD YPIGMRVQMQ HEVEESLRRH AGTIIGHEDI DKIRWPGSEW RCLKVQWDAV LDDKMNPERV CPWWIEPLES AKEKKQVPAL PTTKKALALN QRSLPGISSF GMHDGQNSAG PSSQTRREDR DLQGQDYSGI HSAQPLQRAP PTDVIHPSKV PIRGSRFGKE NPNQLPFPMQ GPLHKSLSRS MSLTHEDLSI TSSNLSSIGS ESLGWPSTES RNENDVPFGQ PGSCSTFKLF GVSLIDRSSE LPSLQSAAFN KTSSLLSNPP MRVAPGKTCK KCHRVNNRSC TKVLKLGTAL GRAVDLARFH GYTELIAELD SMFEFRGSLI NESSGWHVTC MDDDGDMMQL GDYPWQDFQG VVQKMIICPK EGTNNIKPSS SANPSSL // ID K7N181_SOYBN Unreviewed; 377 AA. AC K7N181; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG89628.1, ECO:0000313|EnsemblPlants:GLYMA20G04761.1}; GN ORFNames=GLYMA_20G035800 {ECO:0000313|EMBL:KRG89628.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G04761.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G04761.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G04761.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG89628.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89628.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA20G04761.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G04761.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG89628.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG89628.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000853; KRG89628.1; -; Genomic_DNA. DR RefSeq; XP_006605565.1; XM_006605502.2. DR STRING; 3847.GLYMA20G04761.1; -. DR EnsemblPlants; GLYMA20G04761.1; GLYMA20G04761.1; GLYMA20G04761. DR GeneID; 102662409; -. DR Gramene; GLYMA20G04761.1; GLYMA20G04761.1; GLYMA20G04761. DR KEGG; gmx:102662409; -. DR eggNOG; ENOG410JDJ2; Eukaryota. DR eggNOG; ENOG41116MG; LUCA. DR InParanoid; K7N181; -. DR OrthoDB; EOG09360FID; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 377 AA; 42682 MW; E2EBA8DA17AAF92C CRC64; MENFFVPFLK KNPNPSITTT GGNGSSSSNQ TSLVQPSTYP QNFPYNTSVK LNFPEQPYFI PLYPFPTGQV SFSNQPYGMP NSELQGSRAC MTKATRERWR QVRQRSKNST LVAPNSVLER TTREQFVPNG GSNVRITVKQ HNATKFFNTP NGKKLEEILT KKLNNSDVGV LGRIVLPKRE AEDKLPTLWK KEGINIVLKD VYSEIEWSIK YKYWTNNKSR MYILDNTGDF VNHYKLQTGD FITLYKDELK NLYVSARKDQ ENLEESKSSS NTGMSHEPDA YLAYLTKELS HKGKAEAANN LLNNVEEEAP NQANQLHQFM PMNNIVGEGA SNQAIQEAAP AAPVNVNQEN KVVDDDDDDI YGGLDNIFEI GNTYQIW // ID K7N2T2_SOYBN Unreviewed; 369 AA. AC K7N2T2; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24211.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G24211.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G24211.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24211.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA20G24211.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24211.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA20G24211.1; GLYMA20G24211.1; GLYMA20G24211. DR Gramene; GLYMA20G24211.1; GLYMA20G24211.1; GLYMA20G24211. DR InParanoid; K7N2T2; -. DR OMA; WISEERA; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 152 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 152 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 369 AA; 42869 MW; 3EF7806EB4FD1C77 CRC64; MSFGLPSNKG FGKEDNCNRI PRSFVNKCWE GISNPVLLLL PNGVEWKVKW KKLDADILLI EDWKEFAEFC SLDKDHLLVF EYLRKSQFLV VIFDQNGLEM EYPLMGGTLD GDEKGGRGRG MMNAKRRCSN SNALKSSTAL ERAKAFRSEN PFFIREMHPS YIHKYIMVMP GNFLTEDQQK ENDSVTLWIS EERAWHVKFY TNRSSGQINL STGWVDFVKD NNLKIGNVCV FEQIKKTRIS FRVFIFRDGE ESSPSNFSDS EFRGCNNEVS ENHFTLSIKP CQFYCMNVPK KFIRNHEMDG INEVTLQVGK RSWNVKLDCY GRFTSGLHDF MSQHNVEAGD VIHFELIDKK KFVFQVRVTR CISIDFELL // ID K7N2T3_SOYBN Unreviewed; 454 AA. AC K7N2T3; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG90687.1, ECO:0000313|EnsemblPlants:GLYMA20G24222.1}; GN ORFNames=GLYMA_20G108000 {ECO:0000313|EMBL:KRG90687.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G24222.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G24222.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24222.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG90687.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG90687.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA20G24222.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24222.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG90687.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG90687.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000853; KRG90687.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA20G24222.1; GLYMA20G24222.1; GLYMA20G24222. DR Gramene; GLYMA20G24222.1; GLYMA20G24222.1; GLYMA20G24222. DR InParanoid; K7N2T3; -. DR OMA; WISNERA; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 337 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 360 449 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 337 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 360 449 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 454 AA; 53298 MW; DCC3437D5B81D8FB CRC64; MGWAFRLHFF VWPSTSDIHF FKRIEEDAIR NGELRIPRSF VNKCWEGMSN PVVLLLRNGA EWKVKWKKLD VDVWLIDDWK EFADFCCLDQ DHLLVFKYMG KSRFQVVIFY QNGLEMQYPL MEETIDGNSL CQPKRAKSPL PFSSSIKKVK TNPRKEPSSY PGHDHDVKTE PAQSQRRKVE LSKKFHADDL DDAKPKKRGG RRRRIMCSNS RAIKRDELLQ DTESSTALER AKAFRTDNPS FIRAMGKSYI ERSVLFMPGN FITEDQQKED DHVFLWISNE RAWHVKFYLS HSSGQILLSI GWMDFVKDNN LKIGNVCVFE QIKKPGISFR VVIFRDPEES SPFKFPDSES RRFNNNKVSE NHFTISIKPS QLCHMNVPKK FIKNHDIDNT KEVTLQVGKR SWNVTLDCYG RFTSGWSEFM SQCDLEAGDV CYFELIDKKK FVFEVRFKRC ISID // ID K7N2T4_SOYBN Unreviewed; 128 AA. AC K7N2T4; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG90688.1, ECO:0000313|EnsemblPlants:GLYMA20G24233.1}; GN ORFNames=GLYMA_20G108100 {ECO:0000313|EMBL:KRG90688.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G24233.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G24233.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24233.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG90688.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG90688.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA20G24233.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24233.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG90688.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG90688.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000853; KRG90688.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA20G24233.1; GLYMA20G24233.1; GLYMA20G24233. DR Gramene; GLYMA20G24233.1; GLYMA20G24233.1; GLYMA20G24233. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 128 AA; 14726 MW; A4A34FCE9876634A CRC64; MPIGDAQNQR LLEVSCYKKI LKAMPGNFIT EEQQKEDDSV TLWTSEDRTW HVNFYLNRSS KQIILGAGWM DAVKNNNLKI GNVCIFEQSK KPGISFRVVN FHDREESNPS KFPGNLKIGE RSWPVRLA // ID K7N2T5_SOYBN Unreviewed; 126 AA. AC K7N2T5; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24244.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G24244.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G24244.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24244.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA20G24244.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24244.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA20G24244.1; GLYMA20G24244.1; GLYMA20G24244. DR Gramene; GLYMA20G24244.1; GLYMA20G24244.1; GLYMA20G24244. DR InParanoid; K7N2T5; -. DR OMA; ILINPTH; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 126 AA; 14424 MW; E79C02DBA6F573EC CRC64; EKAIERTSSL NTPKLLRAKK VARNFVSNNV FFTVVIARPQ LEEGAWKVVP KFLDMERKKQ NVMLQIENRM WPVKLTNGGG DMQYDRFTSG WSLFAKESKL QAGDICIFEL IDPDGPTLEV HITKAR // ID K7N2T6_SOYBN Unreviewed; 205 AA. AC K7N2T6; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24256.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G24256.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G24256.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24256.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA20G24256.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24256.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_014628020.1; XM_014772534.1. DR EnsemblPlants; GLYMA20G24256.1; GLYMA20G24256.1; GLYMA20G24256. DR GeneID; 102661645; -. DR Gramene; GLYMA20G24256.1; GLYMA20G24256.1; GLYMA20G24256. DR KEGG; gmx:102661645; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K7N2T6; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 205 AA; 23801 MW; F7872AE50A316F27 CRC64; MATPPLVQRK ASLPIHFFKT ILESNVEWMK IPNKFTRRYG GGLSNPVFLR PPDSKEWEVH WTKENGEVWF QKGWKEFVEY YSLEHGHFVL FKYNGTSLID VLILDRSAIE IDDEMGTVDP NVEKLHADKG VRSDHHQTKV RVRPRSPLVS SEPRNKMPSG SHRNVERNFN LQKLDADAVV HSDEGAKFRK SVKHQPRGMK LIYGR // ID K7N2T7_SOYBN Unreviewed; 267 AA. AC K7N2T7; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG90691.1, ECO:0000313|EnsemblPlants:GLYMA20G24268.1}; GN ORFNames=GLYMA_20G108400 {ECO:0000313|EMBL:KRG90691.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G24268.1, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G24268.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24268.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:KRG90691.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG90691.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [3] {ECO:0000313|EnsemblPlants:GLYMA20G24268.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G24268.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:KRG90691.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRG90691.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000853; KRG90691.1; -; Genomic_DNA. DR EnsemblPlants; GLYMA20G24268.1; GLYMA20G24268.1; GLYMA20G24268. DR Gramene; GLYMA20G24268.1; GLYMA20G24268.1; GLYMA20G24268. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; K7N2T7; -. DR OMA; HTHEAPN; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 178 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 178 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30895 MW; E305137BCA470A0B CRC64; MAAHRPGRDA TLPILFFKII LKTNLERLKI PNKFTSKYGG GLPNPVFIKP LDGTQWKVNW TKQNGEVWFE KGWKEFVEHY SLDHGHLIFF KYEGTSQIDV LILDQSALEI DYLCDTCDEN EILDHTHEAP NMIFGEWPDQ KAEKIRGEEP IERTSSLNMP TQSRAKEVAR NFISYNPFFT VFIKPVHVAD GRLPLPDLKG IIENKEKYLK LQLGERSWNV KLLNNRLSAG WTSFASESEL QPGDVCVFEL INREDSVFKV HVFKRQC // ID K7N5I0_SOYBN Unreviewed; 320 AA. AC K7N5I0; DT 09-JAN-2013, integrated into UniProtKB/TrEMBL. DT 09-JAN-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G39140.2}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:GLYMA20G39140.2, ECO:0000313|Proteomes:UP000008827}; RN [1] {ECO:0000313|EnsemblPlants:GLYMA20G39140.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G39140.2}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EnsemblPlants:GLYMA20G39140.2} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA20G39140.2}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GLYMA20G39140.2; GLYMA20G39140.2; GLYMA20G39140. DR Gramene; GLYMA20G39140.2; GLYMA20G39140.2; GLYMA20G39140. DR eggNOG; ENOG410IWEF; Eukaryota. DR eggNOG; ENOG410YI8X; LUCA. DR InParanoid; K7N5I0; -. DR OMA; GEVNQES; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000008827; Chromosome 20. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 92 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 92 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36245 MW; 2789A35168FDAE05 CRC64; WQISGVHESS DCSEIKFAFD AVVKRARHEE NNAAAQKFKG VVSQQNGNWG AQIYAHQQRI WLGTFKSERE AAMAYDSASI KLRSGECHRN FPWNDQTVQE PQFQSHYSAE TVLNMIRDGT YPSKFATFLK TRQTQKGVAK HIGLKGDDEE QFCCTQLFQK ELTPSDVGKL NRLVIPKKHA VSYFPYVGGS ADESGSVDVE AVFYDKLMRL WKFRYCYWKS SQSYVFTRGW NRFVKDKKLK AKDVIAFFTW GKSGGEGEAF ALIDVIYNNN AEEDSKGDTK QVLGNQLQLA GSEEGEDEDA NIGKDFNAQK GLRLFGVCIT // ID K7TJD3_MAIZE Unreviewed; 826 AA. AC K7TJD3; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 40. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100383196 {ECO:0000313|EnsemblPlants:Zm00001d023659_P007}; GN ORFNames=ZEAMMB73_Zm00001d023659 {ECO:0000313|EMBL:AQK39757.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK39757.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQK39757.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK39757.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d023659_P007} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d023659_P007}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000786; AQK39757.1; -; Genomic_DNA. DR RefSeq; XP_008662180.1; XM_008663958.1. DR UniGene; Zm.23421; -. DR STRING; 4577.GRMZM2G006042_P03; -. DR EnsemblPlants; Zm00001d023659_T007; Zm00001d023659_P007; Zm00001d023659. DR GeneID; 100383196; -. DR Gramene; Zm00001d023659_T007; Zm00001d023659_P007; Zm00001d023659. DR OMA; FTCYDEL; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 679 763 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 826 AA; 91139 MW; EB2488442F00A802 CRC64; MVAAAAAAGG GADAGCGGGG GGGGKDALFV ELWKACAGPL SSVPLLGEKV YYFPQGHIEQ VEASTNHLAE HQGTPLYNLP WKIPCKLMNM ELKAEPDTDE VYAQLTLLPD KKQDENTSAR VENEEAEEEV VPHVPPATSE GLRIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTVYYKPR TSPAEFVVSR ARYCESLKRN YSIGMRFRMR FEGEEAAEQR FTGTIVGICV SDPSGWADSK WRSLKVRWDE ASSVPRPERV SPWQIEPAVS PSPVNPLPVR FKRSRSSVNA SPSDVSTVNR EVASKVMVES QQNNLPRALH NQGRTQLTGR YRDSTDVKTA QDLTMWSSGT EQQRNNIAAQ TKRCLEGWTQ SRTPEGYNQL FSAFQPLKDA HNPLRPFPNK ISGTRSSTWV TADARYPAQQ ANHNMLHGTL SFMPHSSGFR MIQQNNLVTP EAANFTGKSA FTSLQGHVTD QCSTGWFGSI ESNSHTDHAS SSLIRSQPLV IGNDVQKTKG TSFKLFGIPL GSPEKSEPLV SPPSVAYDGK LQTSPTDNNE PCSEATQNIQ NKVQSSSTRS CKKVHKQGSA LGRSIDLTKF ACYDELIAEL DQMFDFDGEL KSPCRNWLVV YTDNEGDMML VGDDPWNEFC DMVHKIFIYT REEVERMNPG ALNARLEDCL SDSLGRGLAS KEPRSGPSTS AVDSENRANL STLLKVVKQT KGHVSE // ID K7TQV4_MAIZE Unreviewed; 249 AA. AC K7TQV4; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB05901.1}; DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:AQK41465.1}; GN Name=ABI23 {ECO:0000313|EMBL:AIB05901.1}; GN ORFNames=ZEAMMB73_Zm00001d024545 {ECO:0000313|EMBL:AQK41465.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK41465.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AIB05901.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AQK41465.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK41465.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d024545_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d024545_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ728410; AIB05901.1; -; Genomic_DNA. DR EMBL; CM000786; AQK41465.1; -; Genomic_DNA. DR RefSeq; XP_008664024.1; XM_008665802.1. DR EnsemblPlants; Zm00001d024545_T001; Zm00001d024545_P001; Zm00001d024545. DR GeneID; 103642549; -. DR Gramene; Zm00001d024545_T001; Zm00001d024545_P001; Zm00001d024545. DR eggNOG; ENOG410JS8F; Eukaryota. DR eggNOG; ENOG41116NU; LUCA. DR OMA; FNVECSG; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 249 249 {ECO:0000313|EMBL:AIB05901.1}. SQ SEQUENCE 249 AA; 27133 MW; 72FC8BB66E8C17BD CRC64; MLHMDLSLGT LVEVEDSQEV QEEDNNLYKQ QRALGQDLHR RQGVSGGGPS HSHGVEREHM FDKVLTPSDV GKLNRLVVPK QHAERFFPAA GAGSTQLCFQ DRGGALWQFR YSYWGSSQSY VMTKGWSRFV RAARLAAGDT VTFSRSGGGR YFIEYRHCQR RRRDVDISFG DAATVPAWPR PIVIGTAAMN NGGATVASAT IAGHDIEVAV APSGARSFRL FGFNVECSGD DAPAPAPAPA EVEYVDGDT // ID K7TTV6_MAIZE Unreviewed; 366 AA. AC K7TTV6; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Auxin response factor 17 {ECO:0000313|EMBL:AQK47481.1}; GN Name=103642222 {ECO:0000313|EnsemblPlants:Zm00001d026694_P001}; GN ORFNames=ZEAMMB73_Zm00001d026694 {ECO:0000313|EMBL:AQK47481.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK47481.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQK47481.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK47481.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d026694_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d026694_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000786; AQK47481.1; -; Genomic_DNA. DR RefSeq; XP_008663754.1; XM_008665532.1. DR EnsemblPlants; Zm00001d026694_T001; Zm00001d026694_P001; Zm00001d026694. DR GeneID; 103642222; -. DR Gramene; Zm00001d026694_T001; Zm00001d026694_P001; Zm00001d026694. DR KEGG; zma:103642222; -. DR OMA; GHEHDIG; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41065 MW; D3E6B1D57ED75B30 CRC64; MATEPALPQG HGDGDSIVDR DVWLACAVPF SRVPTVGAEV YYFPDGHAEQ HLLAPLPASH RFPCTCTVTD VSLGAEDRTD EVFAKISLRP GPAAASRPEP GPGPGSSNST RQGLSYFVNE LLHRDTSTSG MFCIPRYCTE HIFPKLDLNA NPPEQDLVMR DTRGKPWQFH HIYVVKIRQH RLTAGWSEFV DAKLLVAGDT IVFMRHPNGD LILGLRRKAT RTSWRPRASP PWAGPSRSPT SRDRPPWSSS SRTARWIARS PPAGNEARRL EDENKQRSVW VDGHVVKANR QNIWRMLEIH WWGDSPASAS PPSRAMSRFV NVWQVQRVAW FLPRPYYWRV RKKPGPGHEH DIGGATNSCN AKPLSC // ID K7U085_MAIZE Unreviewed; 849 AA. AC K7U085; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100274564 {ECO:0000313|EnsemblPlants:Zm00001d049295_P006}; GN ORFNames=ZEAMMB73_Zm00001d049295 {ECO:0000313|EMBL:AQK50005.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK50005.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQK50005.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK50005.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d049295_P006} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d049295_P006}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000780; AQK50005.1; -; Genomic_DNA. DR RefSeq; NP_001307052.1; NM_001320123.1. DR UniGene; Zm.2903; -. DR EnsemblPlants; Zm00001d049295_T006; Zm00001d049295_P006; Zm00001d049295. DR GeneID; 100274564; -. DR Gramene; Zm00001d049295_T006; Zm00001d049295_P006; Zm00001d049295. DR KEGG; zma:100274564; -. DR Proteomes; UP000007305; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 716 798 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 849 AA; 93023 MW; 76C127FF76CE7285 CRC64; MTSSAAAAAA AAQVAGGGGG GEGDAAAAAR GGGGTEDGMY TELWNLCAGP LVTVPRVGDK VYYFPQGHIE QVEASTNQVA EQHMQFYDLP WKILCEVMNV ELKAEPDNDE VYAQLTLLPE SKPEENGSSE EMPASPPAAL ARPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT RQPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGDSG ELRVGVRRAM RQQANVPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPAEFVVP CDRYMESLKR NYPIGMRFKM RFEGEEAPEQ RFTGTIVGNV DPDQAGWAES KWRYLKVRWD EASSIPRPER VSPWQIEPAV SPPPINPLPV HRPKRPRSNA VASLPESSAP TKEAAPKVTL ETQQHALQRP LQTQDNVAPK SVFGDNSELD SAHKSSLRPS GFDLDKSTIG MQRKLGSDIW MRMNRPDGYS EMLSGYQPPN EGARNSQGFC SLPDQIAAGR PNFWHTVNAH YQDQQGNHNL FPGSWSMMPS STGFGMNRQS YPMIQEVGGM SQSCTNTKFG NGVYAALPGR GIDRYPSGWF GHTTPGGRVD DAQPRVIKPQ PLVLAHGEAL KMKGNSCKLF GIHLDSPAKS EPLKSPPSVA TPAAEKWMAD GIDADKSPEP HKTPKQLGAT QVDPVPERCP QASRGTQCKS QGGSTRSCKK VHKQGMALGR SVDLTKFNGY TELVAELDEM FDFNGELKGC SKEWMVVYTD YEGDMMLVGD DPWNEFCSMV HKIFVYTREE VQRMNPGALN SRPEDSGLAN STERGSASTA AAREAPGYQS ASSLNSDNC // ID K7U5N4_MAIZE Unreviewed; 404 AA. AC K7U5N4; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB04454.1}; DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:AQK45280.1}; GN Name=ABI2 {ECO:0000313|EMBL:AIB04454.1}; GN Synonyms=103641911 {ECO:0000313|EnsemblPlants:Zm00001d026005_P001}; GN ORFNames=ZEAMMB73_Zm00001d026005 {ECO:0000313|EMBL:AQK45280.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK45280.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AIB04454.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AQK45280.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK45280.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d026005_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d026005_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ726963; AIB04454.1; -; Genomic_DNA. DR EMBL; CM000786; AQK45280.1; -; Genomic_DNA. DR RefSeq; XP_008663443.1; XM_008665221.1. DR STRING; 4577.GRMZM2G018485_P01; -. DR EnsemblPlants; Zm00001d026005_T001; Zm00001d026005_P001; Zm00001d026005. DR GeneID; 103641911; -. DR Gramene; Zm00001d026005_T001; Zm00001d026005_P001; Zm00001d026005. DR KEGG; zma:103641911; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; HMPPLAS; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 404 404 {ECO:0000313|EMBL:AIB04454.1}. SQ SEQUENCE 404 AA; 43360 MW; 0CEEF1B428179995 CRC64; MEFASSSSRF SKEEEEQEEE EDEEVSPREI PFMTAAATAG TGATSSSPSP SAAASASASS SAAALRSSGG GGGGDDDMEV VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAAAN EKGLLLSFED RAGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAADAA RDRLFIDWRK RSADSSRHPH RMLPRLPLHM PPLASPYGYG PWGGGAGGFF VPPATLYEHH RFRQALDFRN VSAAAAPARQ LLFFGSAGMP PRASIPQQQQ PPPPSLHSIM MVQPSPEATA GLPMLLDSVP LVNSPTAAAK RVRLFGVNLD NPQPGSSAES SHDTNALSLR MPGWQRPGPL RFFESTPQRG AAGAAAGAES SAASSPSSPS SSKREAHSSV DLDL // ID K7UE08_MAIZE Unreviewed; 224 AA. AC K7UE08; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:AQK40670.1}; GN Name=103642409 {ECO:0000313|EnsemblPlants:Zm00001d024103_P001}; GN ORFNames=ZEAMMB73_Zm00001d024103 {ECO:0000313|EMBL:AQK40670.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK40670.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQK40670.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK40670.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d024103_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d024103_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000786; AQK40670.1; -; Genomic_DNA. DR RefSeq; XP_008663910.1; XM_008665688.1. DR STRING; 4577.GRMZM2G405170_P01; -. DR EnsemblPlants; Zm00001d024103_T001; Zm00001d024103_P001; Zm00001d024103. DR GeneID; 103642409; -. DR Gramene; Zm00001d024103_T001; Zm00001d024103_P001; Zm00001d024103. DR KEGG; zma:103642409; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 25265 MW; 83DCC38B84BDEC3B CRC64; MALTTLALEL ESAAGDYSHS HSRRERMFEK VVTPSDVGKL NRLVVPKQFA ERHLPLRGAA ARSRGTVLCF HDDARGGEAW RFRYSYWSSS QSYVITKGWS RYVRDKRLAT RDIVAFCRDG ARLFIDCQRR RRTTTRRSGS EGAVVLPAPA IGAAVPPMCQ LQMTVVFPDG QHQQAAVAMK KETAAAQEED DKEAQRRCGR CLRLFGVNLL DELRTEPLLL DLQL // ID K7UER2_MAIZE Unreviewed; 296 AA. AC K7UER2; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB04455.1}; DE Flags: Fragment; GN Name=ABI26 {ECO:0000313|EMBL:AIB04455.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB04455.1}; RN [1] {ECO:0000313|EMBL:AIB04455.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ726964; AIB04455.1; -; Genomic_DNA. DR eggNOG; ENOG410JSU0; Eukaryota. DR eggNOG; ENOG41108H5; LUCA. DR OMA; PRQCAEG; -. DR OrthoDB; EOG09360NOS; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 188 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 188 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 296 296 {ECO:0000313|EMBL:AIB04455.1}. SQ SEQUENCE 296 AA; 33068 MW; AA624BD4F5C7A9A1 CRC64; MAFSARTISR EMEVQMGKAP PCLNPFLMVN PLLPPQHVSP WSSKSVPVFQ FGMTNGHGAL DLCEESKRAR KVVHLEYLFS KVLTPSDVGK LNRLLIPRQC AEGFFPMISE VKSGGDDIFL NFEDTSTGLV WRFRFCLWNN SKTYVLTKGW SVFIKEKNLK KGDILSFYRD ASKSIRTNHL FIHIKPHTGT MPLPHHVPSP VFSPSGMVID DQVHDSLNIG KSHGIAPSWK PLSFGSGELM PSTNPTPQQT TFPESTSLAN SIVMAEKHLR LFGVDIDIPT HRYGDESSDG FIKNIA // ID K7UJS6_MAIZE Unreviewed; 224 AA. AC K7UJS6; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB04456.1}; DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:AQK79913.1}; DE Flags: Fragment; GN Name=ABI37 {ECO:0000313|EMBL:AIB04456.1}; GN Synonyms=103631075 {ECO:0000313|EnsemblPlants:Zm00001d035903_P001}; GN ORFNames=ZEAMMB73_Zm00001d035903 {ECO:0000313|EMBL:AQK79913.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB04456.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AIB04456.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AQK79913.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK79913.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d035903_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d035903_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ726965; AIB04456.1; -; Genomic_DNA. DR EMBL; CM000782; AQK79913.1; -; Genomic_DNA. DR RefSeq; XP_008650301.1; XM_008652079.1. DR STRING; 4577.GRMZM2G027253_P01; -. DR EnsemblPlants; Zm00001d035903_T001; Zm00001d035903_P001; Zm00001d035903. DR GeneID; 103631075; -. DR Gramene; Zm00001d035903_T001; Zm00001d035903_P001; Zm00001d035903. DR KEGG; zma:103631075; -. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR OMA; TVAFCRD; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000007305; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 224 224 {ECO:0000313|EMBL:AIB04456.1}. SQ SEQUENCE 224 AA; 25206 MW; E1C9F9A89D6140E1 CRC64; MALTTLTLEL ESAAGDYSHS HSRRERMFEK VVTPSDVGKL NRLVVPKQFA ERHLPLRGAA ARSRGMVLCF HDDARGGEAW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVAFCRDG ARLFIDCQRR RRTTTRRSGS EGAVVLPAPA IGAAVPPMCQ LQMTVVFPAG QHQQAAVAMK KETAAAQQED DNEVQRRRGR CLRLFGVNLL DELRTEPLLL DLQL // ID K7UKA6_MAIZE Unreviewed; 588 AA. AC K7UKA6; A0A1D6JAK1; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=103641851 {ECO:0000313|EnsemblPlants:Zm00001d025871_P001}; GN ORFNames=ZEAMMB73_Zm00001d025871 {ECO:0000313|EMBL:AQK44924.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d025871_P001, ECO:0000313|Proteomes:UP000007305}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQK44924.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44924.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d025871_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025871_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000786; AQK44924.1; -; Genomic_DNA. DR RefSeq; XP_008663388.1; XM_008665166.1. DR STRING; 4577.GRMZM2G005284_P01; -. DR EnsemblPlants; Zm00001d025871_T001; Zm00001d025871_P001; Zm00001d025871. DR GeneID; 103641851; -. DR KEGG; zma:103641851; -. DR OMA; DEPFCAF; -. DR Proteomes; UP000007305; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 588 AA; 63905 MW; 2520A6AE8665DD95 CRC64; MSPEACELTL APRMPASQAG AGAGAEPETK GSVHPQLWYA CAGPTCTVPP VGTAVYYFPQ GHAEHAGAAA DANLHAPPFV PCRVAGVRFM AELDTDEIFV KIRLDPLRSG EPLTDVGEAQ VVNDEAGQRQ PTRPVISSAK TLTKSDSYSG GSLSVRRTCA ETIFPKLDKS IKRPQQLVSA RDVHGVEWTF RHVYRGTPER NLLTTGWSDF VNSKKIVIGD SVVFLREEDG TIHIGLRRAE RASRRNAYGR QLVRGNASGT GAAADGVLRA EDVVAAAVTL AAAGNPFEVV HYPRATAPAF CVRVATVIEA LQVSWCPGLR FKMAFEAKDL SRISWFMGTV AGVGPADPAR WPLSPWRFLQ VTWDEPELVR NMNRLSPWQV ELVATMPNLP HFAAPPTPTP PRKKPRMPTY KEYQSQGRQL FDPVFPLNNP LPLPHPHHHP APTHDWNCHG FVHCSSFPFP DSIAPAAAAG IQGARHANFA QFLFSDHLLS NLRRSLVLGG IRQYPGDHHA APAPRIPIPT DDVKTGSETP RSPSHATKKR DGVKPPGIRL FGQEILTEEQ MKGSHDGKAT NNTSGRSGAP EFGLEPGQ // ID K7URZ7_MAIZE Unreviewed; 914 AA. AC K7URZ7; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=103654892 {ECO:0000313|EnsemblPlants:Zm00001d053819_P001}; GN Synonyms=ARF16 {ECO:0000313|EMBL:AIB05231.1}; GN ORFNames=ZEAMMB73_Zm00001d053819 {ECO:0000313|EMBL:AQK60464.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK60464.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AIB05231.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AQK60464.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK60464.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d053819_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d053819_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727740; AIB05231.1; -; mRNA. DR EMBL; CM000780; AQK60462.1; -; Genomic_DNA. DR EMBL; CM000780; AQK60464.1; -; Genomic_DNA. DR RefSeq; NP_001333732.1; NM_001346803.1. DR UniGene; Zm.4646; -. DR STRING; 4577.GRMZM2G028980_P01; -. DR EnsemblPlants; Zm00001d053819_T001; Zm00001d053819_P001; Zm00001d053819. DR EnsemblPlants; Zm00001d053819_T003; Zm00001d053819_P003; Zm00001d053819. DR GeneID; 103654892; -. DR Gramene; Zm00001d053819_T001; Zm00001d053819_P001; Zm00001d053819. DR Gramene; Zm00001d053819_T003; Zm00001d053819_P003; Zm00001d053819. DR KEGG; zma:103654892; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000007305; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 782 866 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 914 914 {ECO:0000313|EMBL:AIB05231.1}. SQ SEQUENCE 914 AA; 100943 MW; DB550EF06E6BCFC6 CRC64; MKLSPSASGG LQDQPASPEE AEEHKCLNSE LWHACAGPLV SLPSVGSRVV YFPQGHGEQV AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASNQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIAKDLH GNDWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPMAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPSPFALGL KRPWPAGLPS LYGGRGDGLT SSLMWLRDRA NPGFQSLNFS GLGMSPWMQP RLDNSLLGLQ SDMYQTIAAA AALQSTTKQV PPSAMQFQQP QNIADRSALL SSQILQQVQP RFQQIYPQNL NENKIQGHTQ PEYLQVQQQL QRCQSFNEQK PPMHPQQQQQ EPQQQQCVQT PQDQQMQEQK HLHNFHSLPD ALSAFSQLSP ATHSPPSALQ TVPAFSHQQN FPDTNISSLS PSTGPSMHGM LGRLPSEAAS SLPCVAMNAP VSVSDPWSSK RVAVESVNPC RPHVSPHIEH LDMATCNMPQ SSALAPLPGR ECLVDEDGCS DPQNHLLFGV HIDSHSLLMQ GGIPALQNDN SSGTIPYSTS NFLSPSENDF PLNQPLRSAG CLDESDYLPC AENAEQANQQ FATFVKVYKS GTVGRLLDIT RFSSYDELRS EVGRLFGLEG QLEDPLRSGW QLVFVDREDD VLLVGDDPWQ EFVNSVSCIK ILSPEEVQRM GKPGIQLLSS APSRRLGNGC DSYASMQEPR GLDAGMAPVG SVEF // ID K7UV27_MAIZE Unreviewed; 259 AA. AC K7UV27; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:AQK93399.1}; GN ORFNames=ZEAMMB73_Zm00001d010077 {ECO:0000313|EMBL:AQK93399.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK93399.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQK93399.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK93399.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d010077_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d010077_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000784; AQK93399.1; -; Genomic_DNA. DR STRING; 4577.GRMZM2G098443_P01; -. DR EnsemblPlants; Zm00001d010077_T001; Zm00001d010077_P001; Zm00001d010077. DR Gramene; Zm00001d010077_T001; Zm00001d010077_P001; Zm00001d010077. DR Proteomes; UP000007305; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 259 AA; 29337 MW; 276B6F3BBC35EAEE CRC64; MEFTTPPPAT RSGGGEERAA AEHNQHHQQQ HATVEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRTGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFGRGIS EAARDRLFID WRCRPDPPVV HHQYHHRLPL PSAVVPYAPW AAHAHHHHYP ADGHTEPVTP CLCATLVATE MRASSSQLSL TRSNLSRPPQ PRIARVDGAQ PRPSSSPRQP QSLWCRSCQP QPRRTADVP // ID K7UX20_MAIZE Unreviewed; 375 AA. AC K7UX20; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 37. DE SubName: Full=Putative AP2/EREBP transcription factor superfamily protein {ECO:0000313|EMBL:AQK91955.1}; GN Name=103635292 {ECO:0000313|EnsemblPlants:Zm00001d009468_P001}; GN ORFNames=ZEAMMB73_Zm00001d009468 {ECO:0000313|EMBL:AQK91955.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQK91955.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQK91955.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQK91955.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d009468_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d009468_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000784; AQK91955.1; -; Genomic_DNA. DR RefSeq; XP_008656006.1; XM_008657784.1. DR EnsemblPlants; Zm00001d009468_T001; Zm00001d009468_P001; Zm00001d009468. DR GeneID; 103635292; -. DR Gramene; Zm00001d009468_T001; Zm00001d009468_P001; Zm00001d009468. DR KEGG; zma:103635292; -. DR KO; K09287; -. DR OMA; KHTYLDE; -. DR Proteomes; UP000007305; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 132 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 206 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 132 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 206 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 40278 MW; 96606620B00B276A CRC64; MDSTSCLLDD ASSGASTGKN KPAPVPAPAA VTGKPLQRVG SSGASAVMDA AEPGAEADSD GARRAPGGVG GKLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGEAE AARAYDVAAQ RFRGRDAVTN FRPLAESDLD PDAAAELRFL ASRSKAEVVD MLRKHTYGEE LAQNRRAFAA AAASLASPQL PPAKNTSPAA AREHLFDKTV TPSDVGKLNR LVIPKQHAER HFPLRRVQGG RAPILSFEDA AGKAWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG FYRSAAAGRQ LFIDCKLRPK AVRLFGVDLL TEPPRSAAAV AQPEPEQEEI AVSKNKRARD AIAASATPVH IAFKKQRVDV ALTTT // ID K7UYC8_MAIZE Unreviewed; 700 AA. AC K7UYC8; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 41. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF21 {ECO:0000313|EMBL:AIB05456.1}; GN Synonyms=100384553 {ECO:0000313|EnsemblPlants:Zm00001d000358_P001}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB05456.1}; RN [1] {ECO:0000313|EMBL:AIB05456.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:Zm00001d000358_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d000358_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727965; AIB05456.1; -; mRNA. DR RefSeq; XP_008648196.1; XM_008649974.1. DR RefSeq; XP_008648197.1; XM_008649975.1. DR RefSeq; XP_008648198.1; XM_008649976.1. DR RefSeq; XP_008648199.1; XM_008649977.1. DR UniGene; Zm.36960; -. DR STRING; 4577.GRMZM2G390641_P01; -. DR EnsemblPlants; Zm00001d000358_T001; Zm00001d000358_P001; Zm00001d000358. DR GeneID; 100384553; -. DR Gramene; Zm00001d000358_T001; Zm00001d000358_P001; Zm00001d000358. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; QGHAHAD; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007305; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 619 700 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 75511 MW; FA1A0913F1D29244 CRC64; MITFVDSAAM ELERESGRCL VDPQLWHACA GGMVQMPPVH SRVYYFPQGH AEHAQGHAHA DLPAGRVPAL VLCRVDAVRF LADPDTDEVL ARVRLAPVRP NEPDHADAAA PGAREDKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT VLAKDVHGVV WKFRHIYRGT PRRHLLTTGW SAFVNQKRLV AGDSIVFMRT GNGDLCVGIR RAKKGGIGGG PEFPHHQPPD GGGYGYGYAG FSTFLRGEED DAAARGKVRV LVRPEEVVEA ANLAASGQPF EVVYYPRAST PEFCVKAGAV RAAMRTQWCA GMRFKMAFET EDSSRISWFM GTVAAVQVAD PIRWPNSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSSTP AIHHLTPFSP PSRKKLCIPL YPEGHQLPAP MFHGSPLVGR GVGPMRYFPD GGTPPAGIQG ARHAQFGISL PDLHHLTRLQ SSLSPHAHGL RHQLDHGARP RIAGGLIVGH PAARDDISCL LTIGTAPHKK PSDVKSAAAA PAPQLMLFGK PILTEQQISL GFRPLPAPKK SPSDDAAETE RTVSNNSDAS SPAGTASGST PSISGGAPSS CQDNKAAATA TATDDDDLLG HCKVFMQSED VGRTLDLSAV ASYEELYQRL ADMFGVDRAE LTSHVFYRDG ASGALKHAGD EPFSEFTKTA RRLTIQTDAR // ID K7V0T7_MAIZE Unreviewed; 242 AA. AC K7V0T7; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 10-MAY-2017, entry version 31. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB05375.1}; DE Flags: Fragment; GN Name=ABI33 {ECO:0000313|EMBL:AIB05375.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB05375.1}; RN [1] {ECO:0000313|EMBL:AIB05375.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727884; AIB05375.1; -; Genomic_DNA. DR STRING; 4577.GRMZM2G065538_P01; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR OMA; DAMARCK; -. DR OrthoDB; EOG09360IAF; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 242 242 {ECO:0000313|EMBL:AIB05375.1}. SQ SEQUENCE 242 AA; 25699 MW; EC709DBEABD8C788 CRC64; MLRKHTYFDE LAQNKRAFAA AAAAASSAAA TTSTSLGNDN RSSSPACARE HLFDKAVTPS DVGKLNRLVI PKQHAERHFP LHLAAAAGGG ESTGVLLNLE DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLQAGDV VGFYRSAAGA DSKLFIDCKL RPNSVDTAST TSPVGSSPPP APVAKAVRLF GVDLLTAPAD AMARCKRARD LASPPQAAIK KQLVELALAS VDQCYGAGRS FS // ID K7V4V9_MAIZE Unreviewed; 292 AA. AC K7V4V9; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 10-MAY-2017, entry version 35. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB05461.1}; DE Flags: Fragment; GN Name=ABI19 {ECO:0000313|EMBL:AIB05461.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AIB05461.1}; RN [1] {ECO:0000313|EMBL:AIB05461.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ727970; AIB05461.1; -; mRNA. DR STRING; 4577.GRMZM2G035701_P01; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR OMA; SMDMANP; -. DR OrthoDB; EOG09360L9E; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 292 292 {ECO:0000313|EMBL:AIB05461.1}. SQ SEQUENCE 292 AA; 32432 MW; 5F597F2A44578F7A CRC64; MAGITKRRTS PASTSSSSGD VLPQRVTRKR RSARRGPRST ARRPSAPPPM NELDLNTAAL DPDHYATGLR VLLQKELRNS DVSQLGRIVL PKKEAESYLP ILMAKDGKSL CMHDLLNSQL WTFKYRYWFN NKSRMYVLEN TGDYVKAHDL QQGDFIVIYK DDENNRFVIG AKKAGDEQTA TVPQVHEHMH ISAALPAPQA FHDYAGPVAA EAGMLAIVPQ GDEIFDGILN SLPEIPVANV RYSDFFDPFG DSMDMANPLS SSNNPSVNLA THFHDERIGS CSFPYPKSGP QM // ID K7V4X6_MAIZE Unreviewed; 683 AA. AC K7V4X6; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=100502387 {ECO:0000313|EnsemblPlants:Zm00001d012731_P004}; GN ORFNames=ZEAMMB73_Zm00001d012731 {ECO:0000313|EMBL:AQL00426.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d012731_P004, ECO:0000313|Proteomes:UP000007305}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQL00426.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQL00426.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d012731_P004} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d012731_P004}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000784; AQL00426.1; -; Genomic_DNA. DR EMBL; CM000784; AQL00436.1; -; Genomic_DNA. DR STRING; 4577.GRMZM5G874163_P03; -. DR EnsemblPlants; Zm00001d012731_T001; Zm00001d012731_P001; Zm00001d012731. DR EnsemblPlants; Zm00001d012731_T004; Zm00001d012731_P004; Zm00001d012731. DR Gramene; Zm00001d012731_T001; Zm00001d012731_P001; Zm00001d012731. DR OMA; GHERRPP; -. DR Proteomes; UP000007305; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 683 AA; 74120 MW; BE94D1E9EAE452DA CRC64; MGIDLNMVDG EGHERRPPPV TCRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGDVA ADLPPHVVCR VADVELCADA ATDEVCARLA LVAEGEAFGR NLGGGGVEGD DGMEDFDAER KSGMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED FNSDSTKRHS LTAVADSLKN RSVFHISYNP RATASEYIIP YAKFLKSLNH PVCIGARINF QCHNEDVSER RSGVVVRISE IDPMKWPGSK WRSLLVRWED GAECNGQDRV SPWEIEIAGG SVSVSHSLSA SSSKRTKLCP QGNLDVPAMW NGCTDSMETG KLPRVLQGQE LMSFRTCHVP CAPQTAEAAK LQSSDASRFL SNAHGCALGG PTSRLAVHSS GFTYQCVGFN ESIGFSEVLQ GQEISRAVPK FQGMMSEACS LKDRYGLHSY MRAPVAVNGL SATTQECSLA LSTPPGAQVP SLYPGNVVNR TVVPQLGLAR KFGGGGTNGQ QSGPFDRPRE LWTRPQHETP DQMNLDQFET RRPSVPVDAA KLGSGGGEVR KTSCRLFGFS LTEKILPADD DDVKEVSYET ECQNPRMLDL FGYNCSTPSA ALPALCAAAP FGM // ID K7VPP2_MAIZE Unreviewed; 239 AA. AC K7VPP2; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:AQL09189.1}; GN ORFNames=ZEAMMB73_Zm00001d048244 {ECO:0000313|EMBL:AQL09189.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQL09189.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AQL09189.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQL09189.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EnsemblPlants:Zm00001d048244_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d048244_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000785; AQL09189.1; -; Genomic_DNA. DR STRING; 4577.GRMZM2G028794_P01; -. DR EnsemblPlants; Zm00001d048244_T001; Zm00001d048244_P001; Zm00001d048244. DR Gramene; Zm00001d048244_T001; Zm00001d048244_P001; Zm00001d048244. DR OMA; DPQFPSF; -. DR Proteomes; UP000007305; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 27227 MW; 785A7D927ADCDDEF CRC64; MVAAAAETQW MSPYEVARER NVEENKRKME ALNLRHLSAV IKEAPKTPSP MKPKRRRPIE DAVVVPSPPR RSRRLANLPE LKYAEIAPHT ADRMTRSPRK PACRIYFANR GSISMKARLE ATRKAEELES ELDHEIPSFV KAMLHSHVVR GFWLQLPSHF CDTYMPKQDS IITLVDEKDE EFDTKYLAYK KGLSGGWAGF ALCHGMQDGD SAVFQLIKPT TFKVYIIRAA SDDVSEVDE // ID K7WD32_MAIZE Unreviewed; 277 AA. AC K7WD32; DT 06-FEB-2013, integrated into UniProtKB/TrEMBL. DT 06-FEB-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE SubName: Full=ABI3VP1 transcription factor {ECO:0000313|EMBL:AIB04457.1}; DE SubName: Full=B3 domain-containing transcription factor NGA2 {ECO:0000313|EMBL:AQL06238.1}; GN Name=ABI38 {ECO:0000313|EMBL:AIB04457.1}; GN Synonyms=103639087 {ECO:0000313|EnsemblPlants:Zm00001d047359_P001}; GN ORFNames=ZEAMMB73_Zm00001d047359 {ECO:0000313|EMBL:AQL06238.1}; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AQL06238.1}; RN [1] {ECO:0000313|Proteomes:UP000007305} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305}; RX PubMed=19965430; DOI=10.1126/science.1178534; RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D., RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K., RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M., RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K., RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J., RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S., RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K., RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S., RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M., RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H., RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C., RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T., RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L., RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P., RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A., RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C., RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D., RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C., RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M., RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S., RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G., RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R., RA Wing R.A., Wilson R.K.; RT "The B73 maize genome: complexity, diversity, and dynamics."; RL Science 326:1112-1115(2009). RN [2] {ECO:0000313|EMBL:AIB04457.1} RP NUCLEOTIDE SEQUENCE. RA Burdo B., Gray J., Goetting-Minesky M.P., Wittler B., Hunt M., Li T., RA Velliquette D., Thomas J., Gentzel I., Dos Santos Brito M., RA Mejia-Guerra M.K., Connolly L.N., Qaisi D., Li W., Casas M.I., RA Doseff A.I., Grotewold E.; RT "The Maize TFome - Development of a transcription factor open reading RT frame collection for functional genomics."; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AQL06238.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Seedling {ECO:0000313|EMBL:AQL06238.1}; RG Maize Genome Sequencing Project; RA Ware D.; RT "Update maize B73 reference genome by single molecule sequencing RT technologies."; RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EnsemblPlants:Zm00001d047359_P001} RP IDENTIFICATION. RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d047359_P001}; RG EnsemblPlants; RL Submitted (MAY-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KJ726966; AIB04457.1; -; Genomic_DNA. DR EMBL; CM000785; AQL06238.1; -; Genomic_DNA. DR RefSeq; XP_008660105.1; XM_008661883.1. DR EnsemblPlants; Zm00001d047359_T001; Zm00001d047359_P001; Zm00001d047359. DR GeneID; 103639087; -. DR Gramene; Zm00001d047359_T001; Zm00001d047359_P001; Zm00001d047359. DR KEGG; zma:103639087; -. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000007305; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000007305}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000007305}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 277 277 {ECO:0000313|EMBL:AIB04457.1}. SQ SEQUENCE 277 AA; 29872 MW; 0AA1153D5F7617B3 CRC64; MEFTPAHAHA RVVEDSERPR GGVAWVEKEH MFEKVVTPSD VGKLNRLVIP KQHAERYFPA LDASSAAAAA AAAAAGGGKG LVLSFEDRAG KAWRFRYSYW NSSQSYVMTK GWSRFVKEKR LGAGDTVLFA RGAGGARGRF FIDFRRRRQD LAFLQPTLAS AQRLLPLPSV PICPWQDYGA SAPAPNRHVL FLRPQVPAAV VLKSVPVHVA ASAVEATMSK RVRLFGVNLD CPPDAEDSAT VPRGRAASTT LLQLPSPSSS TSSSTAGKDV CCLDLGL // ID M0RFD7_MUSAM Unreviewed; 500 AA. AC M0RFD7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04600_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04600_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04600_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04600_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P04600_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr10T04600_001; GSMUA_Achr10P04600_001; GSMUA_Achr10G04600_001. DR Gramene; GSMUA_Achr10T04600_001; GSMUA_Achr10P04600_001; GSMUA_Achr10G04600_001. DR OMA; IDPKIWR; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000012960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 144 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 500 AA; 54983 MW; 2C243B74A7BBEB40 CRC64; MEKSAATGEE LQLVDPRVWK ASAGISSRIA AVGSSVYYFP QGHADQASSL PDFSAVPCPR AYVRCRISSV RLHANRSTDE VFARISLDPR APPAASPVQP QTEFPFSYSH AAMPTLGGGF SVPRFCAESI FPPLDLGDPT PAQTVTIHDV HGKSWTFRHV YRGTPRRHLL TSGWSNFVNS KRLISGDSLV FMNSSGKVFV GIRRTSRSCG PATLNVEMEE KHGRFSRMPQ EAVDAATRVS WTVGMRVRMS VETGDSARMN WFNGSVTKVT INDAGLWRRS PWGMLQVLSL IDSLICESID TKLYKKQFVV ITDMFIEIIT WDDPEVLQKV RDVSPWQVEC FVAGPQGEIP RSIRNILDEQ ESSLLPDDKE DSVLTGFKSR IIGSLSPSVS NSSLFPVGMQ GARHDFFHTA GLFDSKSNGN QTFLNSVHGV NAPEKSDVPV EPSIRIPSQS RGSSPPRQGS IQALDRETLE PASNQVTKAS IQLFGQVIHV GNHIDKDADN // ID M0RHI3_MUSAM Unreviewed; 824 AA. AC M0RHI3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12070_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12070_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12070_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12070_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12070_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr10P12070_001; -. DR EnsemblPlants; GSMUA_Achr10T12070_001; GSMUA_Achr10P12070_001; GSMUA_Achr10G12070_001. DR Gramene; GSMUA_Achr10T12070_001; GSMUA_Achr10P12070_001; GSMUA_Achr10G12070_001. DR OMA; AIYRELW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 689 771 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 824 AA; 90987 MW; 5D545B14EAB7E0FA CRC64; MASSEVSVKG SSVGRGQSLS SGCSEPHEGA PVRGGDAEGS MEYSGGAVSG KDSEDALYTE LWLACAGPLV TIPRFGERVF YFPQGHIEQV EASTNQVADQ QMPVYNIPWK IPCRVMDVRL KAEPDTDEVF AQVTLIPDSK QDENTVEKEM LPPPPPRPHV YSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPS QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQNN VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPS EFIVPFDQYV ESIKRNHSVG MRFKMRFEGE EAPEQRFTGT IVGIGDSDSS RWPGSKWKCL KVRWDETSSI PRPDRVSPWK IEPALTPPPL NPLLMPRPKK PRTAAFSYSP DSSILRKEAA PKVIADPSQS HGSPRVLQGQ EIMTLRSAFA DSNESGAAKK SIMWSTNAEE KNDVSSQRRF GSDSWMHTKR HEQTCAEILS GFRAPDSSGF RSPLLEHNSG DKSLSKPHLQ DQESRHNYSP GSWSLMPPHS DFSMESRKDN QPQPKVIKPQ PLVPSQIDVA KPKASSGYKL FGFHINSSPM ISESAVPQSN SADILISHSC QTSTLPQPHG LEADKHSESS IVAKLVGTTP TNGDAEKLIQ ACPQAPKEGQ SKLQGGPIRS CTKVHKQGIA LGRSVDLTKF NGYDELIAEL DQMFEFEGAL VAPNKNWLVV YTDNEGDMML VGDDPWNEFC NMVHKIYIYT REEVHRMNPG TLNSRVEESP AASDEKIAGK ETNGPVPTPD PDNSEGCPGV DAAF // ID M0RID6_MUSAM Unreviewed; 667 AA. AC M0RID6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15100_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15100_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15100_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15100_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15100_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr10P15100_001; -. DR EnsemblPlants; GSMUA_Achr10T15100_001; GSMUA_Achr10P15100_001; GSMUA_Achr10G15100_001. DR Gramene; GSMUA_Achr10T15100_001; GSMUA_Achr10P15100_001; GSMUA_Achr10G15100_001. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000012960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 553 645 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 75254 MW; A41CB18B4C06A77E CRC64; MAYEAAARVG ARAEGVQSGK GLGGGDVLYE ELWRACAGPL VEVPRADDRV FYFPQGHIEQ LEASTNQELN QQIPLFNLPY KILCRVVDVR LKADPETDEV FAQIVLLPEA DQREPTSSEP RLPEQPRPTV YSFCKILTAS DTSTHGGFSV LRRHATECLP PLDMSQQTPT QELVAKDLHN FEWRFKHIYR GKYRISRQPR RHLLTTGWST FVTSKRLAAG DAFVFLRGEN GELRVGVRCL ARQRSAIPAS VISSQSMHLG VLAAASHAVT TNTLFTVYYK PRTSQFIISV NKYLKALQEG YTLGARFKMR FEGEDVPEKR FSGTVIGIED CSSQWTGSKW RSLKVQWDEA CNIDRPERVS PWEIEPFNAL TPASSLAQPV VVKSKRSRQP SDTADLSILE PTAAFWYSGT NEPHEMLSFT GTDAENLETH DAWPCIQKER KGNDIVIASS SHDQVFCDGW FREVQTPRRS SPSLLNSLNL FQETNEETNI TYRLFGIDLF SHSNCTADTD MVTGLPFSNS DQKLGFSKSS KEQKQSPQDN SKEMYGRHSC SGRSRTKVHM HGLAVGRAVD LTVLEGYDEL LAELEQMFKI EGELQHRNKW EVVFTDDEGD MMLAGDDPWL EFCNMARKIF IYPTEEVKKM KPRGRLTPVA DGEEHVLCSE KDSTTEV // ID M0RIP2_MUSAM Unreviewed; 674 AA. AC M0RIP2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr10P16170_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P16170_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P16170_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P16170_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P16170_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_009379878.1; XM_009381603.2. DR RefSeq; XP_009379879.1; XM_009381604.2. DR STRING; 4641.GSMUA_Achr10P16170_001; -. DR EnsemblPlants; GSMUA_Achr10T16170_001; GSMUA_Achr10P16170_001; GSMUA_Achr10G16170_001. DR GeneID; 103968405; -. DR Gramene; GSMUA_Achr10T16170_001; GSMUA_Achr10P16170_001; GSMUA_Achr10G16170_001. DR KEGG; mus:103968405; -. DR KO; K14486; -. DR OMA; EIPERRF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 648 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 75002 MW; 1988D10834A21DE7 CRC64; MALPHLNISS VIGTSGDALY DELWHACAGP LVTLPRKGER AYYFPQGHME QLEASTNQGL DQHVPVFNLP SKILCKVVNV ELKAEPDTDE VYAQITLLPE PNEGEITSPD PPLPEPERCK IHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMTQDPP WQELVAKDLH ENEWRFRHIF RGQPRRHLLT TGWSVYVSSK RLVAGDAFIF LRGENGELRV GVRRLMRQLN NMPSSVISSH SMHLGVLATA SHAITTGTLF SVFYKPRASR SEFLISLNKY LEAKSYKLSV GMRFKMRFEG DETPERRFSG TIVAVIDKVS SQWADSEWRS LKVQWDESSS IQRPDSVSPW ELEPLVAATP PTSQPVQRIK RTRPPASSVM LPEPSPAPGT WKFQVENSQM FSFSGSQRGE KLYSPSKPTS LFSSASQPSS IGFNANIAPS TAASSHMCWP IRTETQSDTF SASINREPCD KKQETGKGCR LFGIQLFESS EIEETSRVPT ISGVGLDKPA TSLEADSDQQ SQPSNIDQSD AAAVNSEPEN LCLKLAQETQ GRQLRSCTKV HMQGMAVGRA VDLTRLIGYD QLVQKLEEMF DIEGELSGGV KKWVVVYTDD EDDMMLVGDD PWHEFCSMVR KIYIYTSEEA KRLCPKKKLP VISEAAKSGS EKAFLDADAD IVAD // ID M0RJP4_MUSAM Unreviewed; 292 AA. AC M0RJP4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19690_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19690_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19690_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19690_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19690_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19690_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr10T19690_001; GSMUA_Achr10P19690_001; GSMUA_Achr10G19690_001. DR Gramene; GSMUA_Achr10T19690_001; GSMUA_Achr10P19690_001; GSMUA_Achr10G19690_001. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 109 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 109 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 32688 MW; 9A8FEBB1D9FE30E6 CRC64; MEGGCVEEAS SDWVNRLHVS KVLQRIGSGV SVVLDPSAEG GGIEAESRKL SSSWYKGVVP QPNGRYGSQI YERHQRVWLG NFGDEAEAAR AYDVAAQWFR GCDAVTNFKP LTESNDEEAA ELSFLVAHSE AEIVDMLRKH TYHDELQQSK QTLRSAREIF GSSVARNGVL LNFEDAAGKM WRFRYSYWNS SRSYVVTKGW SRFVKEKSLK AGDLVSFWRS TGPEKQLCID WKTSPVACNR AVPPSIRPLP VVKLFGVDIS GVPASGDDGK RGREMELFPP PQFFKKQFVE AL // ID M0RLI8_MUSAM Unreviewed; 575 AA. AC M0RLI8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr10P26140_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P26140_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P26140_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr10P26140_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr10P26140_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr10T26140_001; GSMUA_Achr10P26140_001; GSMUA_Achr10G26140_001. DR Gramene; GSMUA_Achr10T26140_001; GSMUA_Achr10P26140_001; GSMUA_Achr10G26140_001. DR OMA; SANQAHE; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000012960; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 575 AA; 63594 MW; 15FBBB0B100FCC5C CRC64; MAAAEGRGGE SVCLELWHAC AGPQIWLPRK TSLVVYFPQG HIEQLGGAGG DGDWLGPSDV PPHVLCRVVD VKLQAAADTD EVYAQLSLVA DCKELEQHLR DDETVESRRV EEADGFSKSH TTHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQLR PLQELVAKDL HGTEWRFRHI YRGQPRRHLL TTGWSAFINK KKLVSGDAVL FLRANDGELR LGIRRADQLK RSIHSAAFSS QKNLGKLTDV ANAVSARTVF CINYDPRASR LGFIIPYWKF TKSFSHSFST GTRFKMQIDS EDAADKRYTG LITGIGELDP LRWPGSKWKC LSVRWDGEVD MAGANRVSPW DIEPTGSASV SDVPPPTAPK KSKISHPPDH LDHTIPNGVG YPDLEEPARF LGVLQGQEIM GLRTLYQGID VTQFKVFGEY VRLQKVFQGQ ETHPPMSTRV LSHLLGTRSS WVRSIHEFSG LGTPCTSSTQ VSSPSSVLMF QQANSKGDHN VLPGGKRNCR LFGFPLTEMI TVPNGIDGCE TAGSSAKQTI HGRCGADPRS MYCCDTILVN IAHLPCFNKL RFCYV // ID M0RN95_MUSAM Unreviewed; 541 AA. AC M0RN95; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00640_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00640_001} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00640_001}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00640_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00640_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr11T00640_001; GSMUA_Achr11P00640_001; GSMUA_Achr11G00640_001. DR Gramene; GSMUA_Achr11T00640_001; GSMUA_Achr11P00640_001; GSMUA_Achr11G00640_001. DR OMA; PFRENDF; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000012960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 463 541 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 541 AA; 59959 MW; 563BE7A85B2F8A71 CRC64; MKDHDRCLDS QLWHACAGGM VQMPAVNSRV YYFPQGHAEH AQGVVDFGTS RQIPPLILCR VTAVKFMADK ETDEVFAKIQ MVPISNSELD CGEDGCLDLG MNGIDSQEKP TSFAKTLTQS DANNGGGFSV WKFRHIYRGT PRRHLLTTGW SAFVNQKKLV AGDSIVFLRA ENGDLRIGIR RAKRGGVGDG PETPSGWNPP GGSTGGNFTS SRGMRGRCRV TAVSVVEAAT FATRRHPFEV VYYPRANTPE FCVKAAAVTA AIRTRWSPGM RFKMAFETED SSRISWFMGT ISSVEVADPV RWPNSPWRLL QVTWDEPDLL QNVKHVSPWL VELVSHMPAL NLAHFSPPSK RPRIPQHPDF PFESHFPTPM GARHANFGLS LSDLHLNKLQ TGLFHAGFHR LDHATPPSRI STGVIVSNST FHDNNPILTE QQNMNVSDGS GYAIGQKGPC YRNCRNSDLS LETGHCKVFM QSEDVGRTLD LSVFGSYEEL YGTLADMFGI EKSEIMSHVL YKDAAGAIKH TGDEPFCDFI KTARRLTILT D // ID M0RNJ1_MUSAM Unreviewed; 810 AA. AC M0RNJ1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr11P01610_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P01610_001} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P01610_001}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P01610_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P01610_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr11P01610_001; -. DR EnsemblPlants; GSMUA_Achr11T01610_001; GSMUA_Achr11P01610_001; GSMUA_Achr11G01610_001. DR Gramene; GSMUA_Achr11T01610_001; GSMUA_Achr11P01610_001; GSMUA_Achr11G01610_001. DR OMA; VVEHTNN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 713 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 810 AA; 90283 MW; 405C02EA2FABDAF2 CRC64; MKLSTVGISQ QAPEGIEKRC LNSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAASTNK EVEGHIPNYP SLPPQLFCQL HNVTMHADVE TDEVYAQMTL QPLSLQEQKD AYFPIEMGVV SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA RDLHDVEWKF RHIYRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTVFYNP RASPSEFVIP LSKYLKAVFH TRVSVGMRFR MLFETEECSV RRYMGTITGL SDMDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHA PFPHGIIFRP HRHLNTKEDE LNAVMWPRSG TGEQGLHPFN LPSLGVGSWM PQRLEPLLLG NELNQYQAMS AAALEDLRGV DILKQQFLQS QQPFQFLQQP GTTSHSFHGQ DFPQTPQRQA IGSQSPRLLE SQPNSAPHQQ LQQLANEQQK QQQVQHTHAY ADTFQVPNNH VQQPSSLPSR FYDKPDFPDP CLVFSSIAPS SSVQGILGSA YPEGNSNPLN CSQLGQSMVS KQSQQSPGPR RIMSQVTPFG PGVLLPSFAE KDSSGGNKKC PGTQSQAPSL LSIADPSLTM HATVGDASAT PYVASCIQNS LYGYLDESSS LLQNSGEVGP QSQTFVKVYK SGSVGRSLDI SRFNNYDELR VELGHMFGIE GLLEDPRRSG WQLVFVDREN DVLLLGDDPW ESFVNNVWYI KILSPEDVHK MGKQGAEAIA // ID M0RPU7_MUSAM Unreviewed; 336 AA. AC M0RPU7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06170_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06170_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06170_001} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06170_001}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06170_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06170_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr11T06170_001; GSMUA_Achr11P06170_001; GSMUA_Achr11G06170_001. DR Gramene; GSMUA_Achr11T06170_001; GSMUA_Achr11P06170_001; GSMUA_Achr11G06170_001. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000012960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 97 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DNA_BIND 41 97 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. SQ SEQUENCE 336 AA; 37232 MW; 67A1D9B7114D0FB9 CRC64; MATAVPAARE GPDSSCIFWG RASPFMAAAT GTSNDPNPST PYRGVMLLPD GHWGAQIYAR GHRVWLGRFE SEIAAAGAFD SAAVKLHHGD YSHRNLPATR HAAHERRFQE TFSIDDVLDM IRDGSYCSRL EEYTRLHAAP IRDLPHARTT SNVTFLEMFV KELTPSDVGK LNRLVIPKKH ATHQSYVFTK GWNKFVKEKR LQAKDTVAFY RCEESDGHRR TYCMIDIIRH NSGGDRSGGS SRSTSGVIGL GLGFKRKKME NGDEEDHCSC GFSRRKSGVM GVGLDLSLER VTAKKDDEGG VVTGSAAPRK SSETQDKKKG LKLFGVWIAD ENDRRG // ID M0RRN3_MUSAM Unreviewed; 185 AA. AC M0RRN3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12530_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12530_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12530_001} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12530_001}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12530_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12530_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr11T12530_001; GSMUA_Achr11P12530_001; GSMUA_Achr11G12530_001. DR Gramene; GSMUA_Achr11T12530_001; GSMUA_Achr11P12530_001; GSMUA_Achr11G12530_001. DR Proteomes; UP000012960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 185 AA; 21168 MW; E0A90A23118E5DC3 CRC64; MDPVSDHHHE AWSWEPPVNL HQHYRHHPYR GEQIEPRRQR EHMFEKSLTP SDVGKLNRLV IPKQQAENQS YVLTKGWSRF VKEKKLDAGD VVLFERLRAG GDRLYIGCRR QGREESPPAP GAPPARPSRN HSCLGTFLRP GNRTKSLQFS TSRSCSGDRE EEAAKNTAEA PANSKRLRLF GVNLN // ID M0RTD2_MUSAM Unreviewed; 829 AA. AC M0RTD2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18520_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18520_001} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18520_001}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18520_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18520_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr11P18520_001; -. DR EnsemblPlants; GSMUA_Achr11T18520_001; GSMUA_Achr11P18520_001; GSMUA_Achr11G18520_001. DR Gramene; GSMUA_Achr11T18520_001; GSMUA_Achr11P18520_001; GSMUA_Achr11G18520_001. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 696 780 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 829 AA; 92220 MW; 5612E571334ECEE7 CRC64; MRLTSSNIPN QSEEEETRCL NSELWHTCAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE INSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPNDLGTSN KQPTNFFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPVQELVAR DLHDNEWKFR HVFRVSVHNA GQPKRHLLTT GWSTFVSAKR LVAGDSVLFI WNENNQLLLG IRHANRPQTF MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRVSV GMRFRMLFET EESSVRRYMG TITGISDLDP ARWPNSHWRA LKVGWDESTA GEKQPRVSLW EIEPLTTFPM YPSSFPVRLK RPWPTGLPFF HGGNDDIDLN LPLMRLRDGG NPAIQSLNFQ GVGVTPWMQP RLDALMLGLQ PDMCQAMTTG ALREMRTIDP TKQVSPAMLQ FQQPQNSANI STPTLPSPIL QHVQTFLQAT QDNQQNLHLL TPHCQQIQQQ KILCGYQEVP YVASNLLQLS SSSQSQSTTL HMISPSCQLK DFPDSNGNSV SASNASPLHG IFQQNSSEET SQLSLPKYGQ PVTSSPCRDG NMDMQNQHLF GVNVDLSILA QNGIPSLNTG VSEICSTNLS YATCNLLSSS GNDFPINRAL SGCNGLDESR FLRSHENVDQ ANPQSGLFVK VYKSGSFGRT LDITKFSSYH DLRSELGCLF GLEGQLEDPL RSGWQLVFVD WENDVLLVGD DPWQEFVNSV SYIKILSPEE VQQMGKQGID FVNSAPVKRL QRNGCDDHVS QQDSTNLSAR ITSVGSFKY // ID M0RUL7_MUSAM Unreviewed; 604 AA. AC M0RUL7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22870_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22870_001} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22870_001}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22870_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22870_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr11P22870_001; -. DR EnsemblPlants; GSMUA_Achr11T22870_001; GSMUA_Achr11P22870_001; GSMUA_Achr11G22870_001. DR Gramene; GSMUA_Achr11T22870_001; GSMUA_Achr11P22870_001; GSMUA_Achr11G22870_001. DR OMA; QGHAHAD; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000012960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 188 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 518 598 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 86 188 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 66670 MW; F5E895D4E30F20DD CRC64; MKDNDKCLDS QLWHACAGGM VQMPAVNSRV YYFPQGHAEH AQGFTDEVFA KIQMAPIRGS ELDCAEDDGL DLGMNGIDVC GKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTVIAKD VHGEVWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSI VFLRAENGEL CVGIRRAKKE DGKLMGGNGD DFDSSRGIRG RSQMRIDSVI EAVKLAANGK PFEVVYYPRA STPEFCVKAA AVKAAIRIQW YPGMRFKMAF ETEDSSRISW FMGTISSVQV ADPIRWPNSP WRLLEVTWDE PDLLQNVKRV SPWLVELVSN LPAIHLAHLS PPRKKPRILQ HPDFPFEGQC PMPMVGTRHA QFGLSLSDVQ LNKLQTDLFH TGFHRLDHAT LPSRISTGVT AGNPTIRDKV SCLLTISHPS QSLKKSCDGK PPQLVLFGQP ILTEEQVSLN KSENTTSHCA TGNSLSDENL EKTVSMSDGS GSAINLKGSL EAFPSQKDHL ASEFGHWTGQ CKVFMESEDV GRTLDLSVLG SYEELYGRLA DMFGTEKSEM VSHVLYKNAA GAVKHTGEEP FSDFMKSARR LTILTDTGSD NIAS // ID M0RVF7_MUSAM Unreviewed; 913 AA. AC M0RVF7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25770_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25770_001} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25770_001}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25770_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25770_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_009385053.1; XM_009386778.2. DR RefSeq; XP_009385054.1; XM_009386779.2. DR STRING; 4641.GSMUA_Achr11P25770_001; -. DR EnsemblPlants; GSMUA_Achr11T25770_001; GSMUA_Achr11P25770_001; GSMUA_Achr11G25770_001. DR GeneID; 103972438; -. DR Gramene; GSMUA_Achr11T25770_001; GSMUA_Achr11P25770_001; GSMUA_Achr11G25770_001. DR KEGG; mus:103972438; -. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 780 864 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 913 AA; 101629 MW; 3C0E306737ED6145 CRC64; MRLSSGGLGN QQNEEAEEQV CLNSELWHAC AGPLVSLPSV GSRVVYFPQG HSEQVAASTN KEFDSLPSYP SLPPQLVCQL HNVTMHADVE TDEVYGQMTL QPLSPQEQKD PYLITEMGTP CKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA KDLHGNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVHH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGQRQP RVSLWEIEPL TTFPMYPSPF PFRLKRPWPT GLPSLYGGKD DISLNSPLLW LQNGGNTGLQ SLNFQGIGVT PWTQPNFDTP ILGLQPGMYQ AMAAAGLQET RTTETTKLIS PSVLPFQQTQ NITTRTSPML PSQVLEHGQS QPPQTFLQDI QINQVQSQSQ AEFLQHQLRQ EYSFGEQQHQ QEISQQQLPQ QKQTLHHQQI QQQKFLSTQQ VCTGMSALPE LISESQSPST ALQNILSFSQ SQNFSNSNGN FVRTSNASSL HDILHQLSPE DASNLHSWSR GNQVFTSSPW PSKRVAIESM LPSGDQCVLP RVEQSGVSQP NIAQRSVTLP PFPGRECMVD QDGNVDGQNH LLFGVNIDSS PLLVQNGMAN LSNIRNETDS MNIRYAASNF VASSGNDFAL NQTLTGSNSL EEAGFLHSPE NVDSLNPKSR TSVKVYKSGS LGRSLDIAKF SSYHELRSEL GHLFGLEGQL EDPLRSGWQL VFVDRENDIL LVGDDPWQEF VNSVWCIKIL SPQEVQQMGK QSVEFLNSTC IKRLPNNSCD DYINRQDSRT VSTGIASVGT LEY // ID M0RWR8_MUSAM Unreviewed; 330 AA. AC M0RWR8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P03600_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr1P03600_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P03600_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P03600_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P03600_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P03600_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr1P03600_001; -. DR EnsemblPlants; GSMUA_Achr1T03600_001; GSMUA_Achr1P03600_001; GSMUA_Achr1G03600_001. DR Gramene; GSMUA_Achr1T03600_001; GSMUA_Achr1P03600_001; GSMUA_Achr1G03600_001. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000012960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 36087 MW; 0A3B466BFFA19286 CRC64; MEFTARRSDG FYMTEEEKHE EASQHPSFIP LSSSSSSPST SAAFGWHVGP SDTAGNGAAG DSGNESNFFT EKEHMFDKVV TPSDVGKLNR LVIPKQHAER HFPLDPTANE KGMLLSFDDR TGKSWRFRYS YWNSSQSYVM TKGWSRFVKE KRLDAGDVVS FGRGVGESGR DHLYIDWKRR QENHDLPRAP RAPLTGVSMA RPLGPWGVSR FFIPPAAIYD HHRPGFGYSP MSSGTSSGGQ FLFVGSTSAG PPQFGAQASA KRVRLFGVNL DCPESKGNAQ LPSGLSSASA PQLQSSSTLQ FLPLPHGRTE SSVAPSSTIT DHRLSLDLDL // ID M0RX98_MUSAM Unreviewed; 298 AA. AC M0RX98; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05400_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05400_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05400_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05400_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05400_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05400_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr1P05400_001; -. DR EnsemblPlants; GSMUA_Achr1T05400_001; GSMUA_Achr1P05400_001; GSMUA_Achr1G05400_001. DR Gramene; GSMUA_Achr1T05400_001; GSMUA_Achr1P05400_001; GSMUA_Achr1G05400_001. DR OMA; PRENSGV; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 97 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 144 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 97 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 144 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 33645 MW; 4BA7B65F32AB4CF8 CRC64; METSSVEDES SEVERRSSPP RPPTLPATEG LQRLGSGASV VLDPEVGAES RKLPSSRYKG VVPQPNGRWG AQIYDKHQRV WLGTFNEEDE AARAYDIVDM LRKHIYHDEM RQSRQSSGAE GRRTYPSRGG SMGWFGGPHR EHLFDKAVTP SDVGKLNRLV IPKQHAEKHF PQPQTGAAAC KAVLLNFEDA CGKVWRFRYS YWNSSQSYVL TKGWRRFVKE EGLRAGDVVT FHRSTGPERQ LFIGRKTRPA VEVVRLFGVN IADVSGVVRR NAKRTCRDME STVSSSCELL KRRCREGL // ID M0RY31_MUSAM Unreviewed; 664 AA. AC M0RY31; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr1P08230_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P08230_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P08230_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P08230_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P08230_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr1T08230_001; GSMUA_Achr1P08230_001; GSMUA_Achr1G08230_001. DR Gramene; GSMUA_Achr1T08230_001; GSMUA_Achr1P08230_001; GSMUA_Achr1G08230_001. DR Proteomes; UP000012960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 73287 MW; 99611CB73DD883D3 CRC64; MKLCLLVART GRRVLAHQPF FCGAGILEES PPVLCWNLQL VDVRITANTP NYIIPLRLNS ELWHACAGPL VSLPPVGSRV VYFPQGHSEL VAASTNRVTG SLPSFPSLPP HLVCQLHNVT MLADEETDEV YAQMTLQALS PQNDLHLPTE LGTRSKHPTN YFRKTLTASD TSTHGCCSIP RRAAEKVFPP LDFSRDPPVQ ELIAKDLHGN EWKFRHTFRG QPKRHLLTIG WTLFVNAKRL VAGDSVIFIW YGYSELLLGV RRAQSPQRVA SADAVHVGLV AAHAVATNSS FTLSYFPRAS PSEFVIPLSK YVKAVLRTRL LVGMRFRMLF ETSESSVRRY MGKIIGIGDL DPVRWPNSHW RSVKVSWDEH AVGERQFRVS PWEIEPLPTF PMYPSPFPLG MKHSWPTAVP CHHGEDDDNV DLASPLMCFQ NGGNLGFLSL NAHSSAAAPW MQPRFDAPML QAEMWPMAAA SGLLEKRVTD AAKQASAATL QPQQTPTPLG QSLDHGGPPQ PPPPPAFLQI AQLNLEQILH QQAQQRSAAT AAAVAPPVQS LLLPPPPPVG YADFSPSIPP LQSPYDTYTI LHNSTDATLP AYSLTYPIDL TSEDILSLHP SFHSSLESLP PLESFGGTSS RTLLDLILHT SWQLNECSNL SFNQVRLHAH VDPN // ID M0S1F8_MUSAM Unreviewed; 971 AA. AC M0S1F8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20000_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20000_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20000_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20000_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20000_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr1P20000_001; -. DR EnsemblPlants; GSMUA_Achr1T20000_001; GSMUA_Achr1P20000_001; GSMUA_Achr1G20000_001. DR Gramene; GSMUA_Achr1T20000_001; GSMUA_Achr1P20000_001; GSMUA_Achr1G20000_001. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000012960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 204 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 864 948 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 204 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 971 AA; 107783 MW; 08EC7F58E25C2CCF CRC64; MSATGADTKP EEGETAAVAP AAGEVLYCGG TNWDMLGRMG APNAANLVSP TRLRPLVGVD IRFVASGCIC GLKNAAALLD EMKLLGEVPS KPSARKVLNS ELWHACAGPL VSLPQPGSLV YYFPQGHIEQ VTSSTRKMAN SRIPSYTDLP SQFMCQVRNV TLHADKETDE IYAQMTLQPV TSENDVFPIP DLGHTRCKHP TEFFCKILTV SDTSKHGGFS VPRRAAEKLC PQLDYSMQPP NQELIVRDLH DNLWTFRHIY RGQPKRHLLT TGWSLFVGAK KLKAVDSIKQ CRSLSPNDLR HFSRISLAGL SIHSVAKPSL KSETNEMCSA CRDENSQLLL GVRCANRKLT ALTSSVLSTD SMHIGVLAAA AHAAASRSPF TVLYNPRACP SEFIIPMTKY HKAAYTQVSI GMRFGMMFET EVSSKRRLYM GTIVGISDYD PVRWPNSRWR NLQVEWYEHG YGERPDRVSL WEIETPESIF AFPNVTSSLK RQCLPGYVAH ILVPRNFILF NNALKFLSNI LFQNTAQYNF SFFCGHLARK GQEALALRFT GIEDTRLMCA VEIFPISYVP NFPTFAIVPF QQSLHHEVLF ICTSDISGPA INNQFVNLNP FTNPTEDGNV DTQHFFAGFG SENFSRLLNK PCNPNCDGLL GHHQSIYAGI LQNVRSCELS RSFSVMPALH TMGSSTQREV VTTAAMQQKQ HFSTAENAAT SSADLSSMAN PNNFEPTETF QLSCISESGT PQCITTDIQE YFGTQLNSLG DELLVQGILS SEVHDLDVQG DCTVLQGVSN SYGIMDLLEE CNNQVMDGLS PIVSHITSTR MTDSVFSLQD VPDSSAGTSS AIIAMNDCSL YQGSRKQACQ QPLRTYTKVQ KVGSVGRSID VTRFSNYYEL RSAVACMFGL EGQLDDPRGS EWKLVYIDYE NDVLQVGDDP WEEFINCVKC IRILSPYEVQ KMSQEGMQLM DGFAWFNWCG F // ID M0S1F9_MUSAM Unreviewed; 1050 AA. AC M0S1F9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20010_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20010_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20010_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20010_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20010_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr1T20010_001; GSMUA_Achr1P20010_001; GSMUA_Achr1G20010_001. DR Gramene; GSMUA_Achr1T20010_001; GSMUA_Achr1P20010_001; GSMUA_Achr1G20010_001. DR OMA; DYDPMRW; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000012960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 269 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 950 1034 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 269 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1050 AA; 117986 MW; 69F3783AA1BF4929 CRC64; MTLIIFCYMF CMDNYRSSSF SAPTSVKICS VLEDVQWMML KWCPPNANAV KICSLDCCFW CLEGDTTYFV VGCLREVFGS RDDGCSMEVP LLLRGEAVVH HSVFSFVSIQ VNLLRLLVED VFHSNKCRVS GLKNAAALLD EMKLLGDVPS KPSARKVLNS EFWHACAGPL VSLPQPGSLL NYFPQGYSEQ VLFFLIISFC FKPSFLSQKK ILIKLLLQII KSIHSLADKE TDKIYAQMTL QPVSSVRFSS CFVELHILIL ICKHPTEIFC KILIVSDTST HGGFSVPRRA AEKLFPQLVR RLFNATSKSE LIVRDLHDNL WTFRHIYRGQ PKRHLLTTGW SLFVSAKRLK AGDSVLFIRD EKSQLLLGVR RANRKQTALT SSVLSTDSMH IGVLAVAAHA VASRSPFTVY YNRRACSSEF IIPLTKYHKA AYTQLSIGMR FGMMFETESS KSRLYMGTIV GISDYDPVRW PNSRWQNLQV EWYEHGYGER PDTVSLWEIE TPESLFAFPN ATSSLKRQCL RGYVGSPYHT HRWEPKIDVE LVCEILFSLQ TPFRPEIYNV IYPAHILVPR NFILFNNALK FFLMCAVEMF PISYVPNFPT FAIIPFQQSL HHEPKLILGL QQSVDYDLKG TAASKYCPAI NNQFVNLKPF TNPTEDGNVD TQHFFACFGS ENFSRLLNKP CNLNCDGLLG HHQSIYAGIL QNVRSRELSR SFSVIMLALH TMGSSTQREV VTTAAMQQKQ HFSTAENAAT SSADLSLMAN PNNFEPTETF QLSCISDSGT PQCITTDIQE YFGTQLNSLG DELLVQGILS SEVHDLDVQG DCTVLQGVSI SYGIMDLFEE SNNQGETIGN LHLDPINESM DMGHVPGAAM DGLSPIGSSW FQIPSVMPVC NFTSNQESLS HITSTRMTDS VFSLQDVPDS SAGTSSASIA TNDCSLYRGS RKQACRQPLR TCTKVQKVGS VGRSIDVTRF SNYYELRSAV ACMFGLEGQL DDPHGSEWKL VYIYYENDVL LVGDDPWEEF INCVKCIRIL SPSEVQQMSW EGMQLMDGFA // ID M0S1G2_MUSAM Unreviewed; 782 AA. AC M0S1G2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20040_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20040_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20040_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20040_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20040_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr1P20040_001; -. DR EnsemblPlants; GSMUA_Achr1T20040_001; GSMUA_Achr1P20040_001; GSMUA_Achr1G20040_001. DR Gramene; GSMUA_Achr1T20040_001; GSMUA_Achr1P20040_001; GSMUA_Achr1G20040_001. DR OMA; INTELWH; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000012960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 681 766 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 145 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 782 AA; 87433 MW; E4F739B05462D2F9 CRC64; MSSVQANVRA AGLNSAAALL DEMKLLGEVP SKPSARKVLN SELWHACAGP LVSLPQPGSL VYYFPQGHSE QVTASTRKIA NSQIPAYTDL PSQLMCQVHN VTLHADKETD EIYAQMTLQP VTSENDVFPI PDLGHTRCKH PTEFFCKILT ASDTSTHGGF SVPRRAAEKL FPQLDYSMQP PNQELIVRDL HDNLWTFRHI YRGQPKRHLL TTGWSLFVGA KRLKAGDSVL FIRDEKSQLL LGVRRANRKQ TALTSSVLST DSMHIGVLAA AAHAAANRSP FTVYYNPRAC PSEFIIPLTK YHKAAYTQVS IGMRFGMMFE TEESSKRRYM GTIVGISDYD PVRWPNSRWR NLQVEWDEHG YGERPDRVSL WEIETPESLF AFPNVTSSLK RQCLPGYVGD AILVSKDSDN VKVWLLSSKM HSTKISLTNQ KNLLRLLNKP CNPNRDGLLA HHQSIYASIL QNVRNNFVSG TQVKSQVSDR EEARPAEHEQ NFQDHNTRGE NGINLQGMKE QSDHKLVQQQ NDPSRTQSPG LHAAQSSDMC NLNYLLPHQD CSHPILDNDD WMTQHSCLQS FMDISSMANP NSFEPTETFQ LSCISDSGTP QRITTDIQEF LGTQLNSLDD ELLVQGILSS ESNNQGETIS NLRFDPSNES MDMGHVPGVA IDGLSPIGSS SKLSFLLISD AIYVEQVQKV GSVGRSIDVT RFSNYCELRS AVACMFGLEG QLDDPRGSEW KLVYVDYEND VLLVGDDPWE EFISCVKCIR ILSPSEVQQM SQEGMQLMDG FA // ID M0S1T3_MUSAM Unreviewed; 294 AA. AC M0S1T3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21250_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21250_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21250_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21250_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21250_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21250_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr1T21250_001; GSMUA_Achr1P21250_001; GSMUA_Achr1G21250_001. DR Gramene; GSMUA_Achr1T21250_001; GSMUA_Achr1P21250_001; GSMUA_Achr1G21250_001. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 149 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 149 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 33058 MW; 1796A474D8C342DD CRC64; MEWSCIEDAM SDGEKRPEVP SPVADPIRRM GSGVSVVFDP TPEVGIEAEA ESGRRLPSSR YKGVVPQPNG RWGAQIYERH QRVWLGTFGD EAEAARVYDV AAQRFRGRDA HTYHDELQQS KRFHAAGHGM GFGRRRMPSY YGSVRELLFD KVVTPSDVGK LNRLVIPKQH AEKHFPLKAG TAAACEGVLL NFEDATGKMW RFRYSYWNSS QSYVITKGWI RFVKEKSLKA GDTVSFWRSM GPEKHLFIDR KPRPENTSCT TKPVRPAHAF RLFGVTISEL PASGGIGKTA AEKE // ID M0S3Y1_MUSAM Unreviewed; 288 AA. AC M0S3Y1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00400_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00400_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00400_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00400_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00400_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00400_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr2T00400_001; GSMUA_Achr2P00400_001; GSMUA_Achr2G00400_001. DR Gramene; GSMUA_Achr2T00400_001; GSMUA_Achr2P00400_001; GSMUA_Achr2G00400_001. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 121 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 288 AA; 31211 MW; 36568C419F2BD171 CRC64; MELTRRKHWK HAPFAPSSSS LSQSSSSAPF RWSDGSSGSG DDDLVEKEHM FDKVVTPSDV GKLNRLVIPK QHAESQSFVM TKGWSRFVKE KRLAAGDTVS FGRGVGESGR DRLYIDWKRR PERLDPIPVP RIPLPGVTFA RSVGPTGGHL YMLPATTTVY GHHGQGYGYN IASMTALEGQ FLYFPPPVTG RPPIEVQPGG GGGLSMVLDP VPVAHSHATA RHVRLFGVNL VCPDAEDDGG VRGVTSSILL QSQQDSALPL LSLPLQQDTL VPSSSMIKEQ HSPSDLDL // ID M0S563_MUSAM Unreviewed; 241 AA. AC M0S563; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P04720_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P04720_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P04720_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P04720_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P04720_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P04720_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_009386873.1; XM_009388598.2. DR STRING; 4641.GSMUA_Achr2P04720_001; -. DR EnsemblPlants; GSMUA_Achr2T04720_001; GSMUA_Achr2P04720_001; GSMUA_Achr2G04720_001. DR GeneID; 103973921; -. DR Gramene; GSMUA_Achr2T04720_001; GSMUA_Achr2P04720_001; GSMUA_Achr2G04720_001. DR KEGG; mus:103973921; -. DR OMA; ELMECNT; -. DR OrthoDB; EOG09360Z5S; -. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 26715 MW; D289BD2CCD8937E7 CRC64; MCRGYLNFYK DCGSAGFEGC EVTAAGQYIW NPARWPGNGA GLLIEEVVVE SCSAISASGG PMSDSSVVLA ACSLTSEESN NHPAGHHVSN CSTNGENNHE DDVSSPNPSE PDISDAEEKT VPLSGKPFFS IIMSKSQVQR PYQLAIPKKF WPHLPNTCVP LTLHFKKKIW EMRYYGDRAQ RRFDGGWKHF VNDNNLKIGD CCFFELMDET DFTFRVQLLR GDLPAECLNN GLSSDRPILI D // ID M0S625_MUSAM Unreviewed; 375 AA. AC M0S625; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07840_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07840_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07840_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07840_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07840_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07840_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr2P07840_001; -. DR EnsemblPlants; GSMUA_Achr2T07840_001; GSMUA_Achr2P07840_001; GSMUA_Achr2G07840_001. DR Gramene; GSMUA_Achr2T07840_001; GSMUA_Achr2P07840_001; GSMUA_Achr2G07840_001. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 268 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 268 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 42184 MW; DAAED632EF8DEF56 CRC64; MVSLRGPSGK IWDVELVDSS NGLRFESGWK EFVVDHAMEI GDFLVFRLEG CSCFSVLVFD ATACEKEVAF LAMPSCGNVA TVRQFMHGKE EAVIDRPHLQ DIDTVIDVNN DWEEVQDSKP LVLHPSDVPV VEKKKMRSVD CLAFQGSPLK EACIYPDSLK SKQSKTGPHV KAGCTFVLFV AKTSTYSQSS RTQSLSKKHA GFSPSKQSNE LLKCLRLLKS SEVCRRGEVV AKVQKMPALL SQRRPVTKEE VYNALRKAKS FKSKNPFFHV VMYDSHVYTG FFLNVPSSFA RLHLPKISQR ITLWDENGKP WKVTYVCCSN CGGLSGGWGA FSFTQNLEKH DVCVFELIKR SLMKVHIFRV VDKITPLIQN FRGES // ID M0S6I0_MUSAM Unreviewed; 340 AA. AC M0S6I0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09390_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09390_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09390_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09390_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09390_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09390_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr2T09390_001; GSMUA_Achr2P09390_001; GSMUA_Achr2G09390_001. DR Gramene; GSMUA_Achr2T09390_001; GSMUA_Achr2P09390_001; GSMUA_Achr2G09390_001. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 39100 MW; 8752AEE90DACA7AC CRC64; MRTSTGLLYG CFSTIVSWKR IPPKFLKHIS SVGSKKAILQ GPSGSKWHVE LGKDMKDTFL TTGWPKFVKD HSLREYEFLV FQYDGDMRFT VLIFDTSACE REDAFAVRPR RKPRQCEGKR KRGRPPKHSP EVGCTIKSEA IEHGMSLELL KDDVQLPNLL QIQPFQQAES GLPYPAPACD VKVKREESEL LINILRNTTK RSKGGRISTR RPLTEKERLR AEEAANSFTS AFPYIVMRMA PSQVYRPYMR IPKWFSREHL PPKRSNLVLR DPCGKSWIVT YIPSLRCQIS RGWSVFARTN KLEEGDYCVL ELIGPIELRV HIFRAVEVEE TLQIAMTPTT // ID M0S6R4_MUSAM Unreviewed; 304 AA. AC M0S6R4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10230_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10230_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10230_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10230_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10230_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10230_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr2T10230_001; GSMUA_Achr2P10230_001; GSMUA_Achr2G10230_001. DR Gramene; GSMUA_Achr2T10230_001; GSMUA_Achr2P10230_001; GSMUA_Achr2G10230_001. DR OMA; XSFARAP; -. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 140 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 304 AA; 33262 MW; D49587026F98F3B3 CRC64; MEFTHGIRDR LSTTDRREEQ VEVSTHLPFI PSYPLPSSSS TAFRWHDDSS GAGDCASTEK EHMFYKVVTP SDVGKLNRLV IPKQHAEKYF PLDTQSYVMT KGWSRFVKEK GLQAGDTISF GRGVGDAGRH RLFIDWKRRP ENRDPPRIPL PELSFARSAG PWSGRLFVPP EAGCGHTWQG HTYPAAGLGT GGGQCLYYSL PAARPPQMEV QHAGRSGFPM VLGSPLPLVR NQPAVKRVRL FGVTLDCPES GGSVNYNGHS HSVRVPQLHP GAALPLLQSP GTAGESTPSG SSSVYKKQHS QPDL // ID M0S902_MUSAM Unreviewed; 214 AA. AC M0S902; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18110_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18110_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18110_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18110_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18110_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18110_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr2P18110_001; -. DR EnsemblPlants; GSMUA_Achr2T18110_001; GSMUA_Achr2P18110_001; GSMUA_Achr2G18110_001. DR Gramene; GSMUA_Achr2T18110_001; GSMUA_Achr2P18110_001; GSMUA_Achr2G18110_001. DR OMA; HERVEFR; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 24 44 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 102 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 102 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 23943 MW; FFCB3A95332268A6 CRC64; MTRSGGRFAE ATNRSEEKEN NETGILLFFV IFLISFSPSA WFLVCGEEKS SNCILRISLC RLSMDSSRGK NCESGDAELS PTEPPASAEK NEIVPLSGKP FLTFVVSWSH VHDPYQVLFP KRFYPFLPAT CVPVTLSYGN RTWKMKYSCK GILRRLCSGW KNFALDTDLK VGDGCVLELM DSNNILFKVQ ILRRGVVPVK RDKGLSCDAP ISID // ID M0S9G7_MUSAM Unreviewed; 668 AA. AC M0S9G7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P19760_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P19760_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P19760_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P19760_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P19760_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr2P19760_001; -. DR EnsemblPlants; GSMUA_Achr2T19760_001; GSMUA_Achr2P19760_001; GSMUA_Achr2G19760_001. DR Gramene; GSMUA_Achr2T19760_001; GSMUA_Achr2P19760_001; GSMUA_Achr2G19760_001. DR OMA; EAMNNKF; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 638 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 668 AA; 75334 MW; ADAF389C22720364 CRC64; MAYEAGAWAG GRSEGGGDKL YEELWRACAG PLVEVPRPRE RVFYFPQGHM EQLEASTNQE LDQQIPLFNL PFKILCRVVD VHLKADPETD EVFAQIILQP EPDQHEPTSP DPCLPEQPRP AVYSFCKILT ASDTSTHGGF SVLRRHATEC LPPLDLSQQI PTQELVAKDL HNFEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGECGDLR VGLRRQARQQ ATIPTSVISS QSMHLGVLAT ASHAVTTHTL FTIYYKPRTS QFIVHVNKYL EAVKNGFALG TRFKMRFEGE DVPEKRFSGT IVGIEDCSSQ WTGSRWRSLK VQWDEAAGIE RPERVSPWEI EPFDATVLVP NVPQPAVVKC KRSRQASDTA DLSVLEPTAT FWYSRTTDSH DLAAVINTEA ENVEAQVTWP SMQKGCKENN ILFHSNSHEA GLFDWLKEAQ SPIRSSGSLL TGGLLNRFRE TNEATKFNSC PAYSSCMVKE QSVNTNMVTT HFSKVVDPIE HPANLSESVE DSDQKSGLSK ASKEQKHSPQ DSLKEIHGAP NCLSRSRTKV HMQGVAVGRA VDLTILEGYD ELIRELEEMF EIHGELRDRN KWEVVFTDDE DDMMLVGDDP WPEFCNMVRK IFIYPAEEVK KMKPGGRLTP LLHDVEDVCL NKDLKTEG // ID M0SA97_MUSAM Unreviewed; 310 AA. AC M0SA97; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P22560_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr2P22560_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P22560_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P22560_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr2P22560_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr2P22560_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr2T22560_001; GSMUA_Achr2P22560_001; GSMUA_Achr2G22560_001. DR Gramene; GSMUA_Achr2T22560_001; GSMUA_Achr2P22560_001; GSMUA_Achr2G22560_001. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 130 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 130 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 34875 MW; 02BA8006469CEDAD CRC64; MDSSCVEEAS SDSEKRLQAP LHVMEALQRM GSGASVVLDP ILRGGTEAES RKLTSSQYKG VVPQPNGRWG AQIYERHNRV WLGTFGDEAE AARTYDVAAQ RFRGRDAIVD MLRKHTKTPG YSRSAREFLL DKVVTPSDVG KLNRLVIPKH HAEKHFPSKS GSSLACKGVL LNFEDASGRV WRFRYSYWNS SQSYVLTKGW SRYVKEKGLK AGDLVSFWRS TGPEKQLYIN CRTGAVANNP YLPSVIRLFG VNISELPASH GEGKRGKEAT EFFPPPKPLE KPFRYARALL TKSLARKSLF VSIQNWYRTC // ID M0SAI0_MUSAM Unreviewed; 181 AA. AC M0SAI0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00120_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00120_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00120_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00120_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00120_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00120_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr3P00120_001; -. DR EnsemblPlants; GSMUA_Achr3T00120_001; GSMUA_Achr3P00120_001; GSMUA_Achr3G00120_001. DR Gramene; GSMUA_Achr3T00120_001; GSMUA_Achr3P00120_001; GSMUA_Achr3G00120_001. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 102 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 181 AA; 20684 MW; 259572A26FCDF8FE CRC64; MILCKELTNS DVSNIGRIVL PKREAEAYLP PLSEREGILL DMDDMTLAVT WKFKFRFWPN NKSRMYILEN TAGFVRAHCL QAGDFLFIYR NPTSGNHIVR GNKGMPQRSP LDSLQYSSRN QFIVNEDCCS STLHVKKARS DRRHSPINPN KIIGHGSSSL TMTELNDLEG DITCHPHYFP E // ID M0SC14_MUSAM Unreviewed; 973 AA. AC M0SC14; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P05460_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P05460_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P05460_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P05460_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P05460_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr3P05460_001; -. DR EnsemblPlants; GSMUA_Achr3T05460_001; GSMUA_Achr3P05460_001; GSMUA_Achr3G05460_001. DR Gramene; GSMUA_Achr3T05460_001; GSMUA_Achr3P05460_001; GSMUA_Achr3G05460_001. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 840 924 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 973 AA; 109157 MW; 0C4D39A0EABD4C0E CRC64; MKAAAHGAAA PNPCEGERKT INPELWYACA GPLVTVPPVG SLVVYFPQGH SEQVAASMQR DIDAHIPNYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVNSYDKEA LQASELALKQ TRPQTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELEA RDLHDNLWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFISQKIK ILVKAYVFLI HYLMCRDQKQ QLLLGIRRAN RQPTNIQSSV LSTDSMHIGI LAAAAHAAAN HSPFTIFYNP RASPSEFVIP FAKYQKAVYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESAAGERRN RVSIWEIEPV VAPFFICPPP FFRKRPRQPG MPDDESSEME NLFKRAMPWL GEEICIKDSQ TQNTIMPGLS LVQWMNMQQN PSLANQTLQT EYLRSLTGPV MQNLGPTDIS RQLGLQAQML QQNNIQFNTG RLPQQGQQVD EHAKVSVPLN QVSAVSRAPQ QMQDPSMQQK QQLVNQALPV NQTQNNIIQP QALVQTQVQP QQQQQQQPPM IQNNQLLLQT LQQQQQQQQS LFSQPRTQQP QLPQVQEYQR TLPDVPQQLS NSHSLLQQSV IPQQCAKPTS QSVRLPQPLQ NQSQQKPQQP QVLIRAQSGV TDDIPSCSTS PSANNGMILP HAILNRNEHR NPMSTEKTSK SPSLLRDAPP DGDVPGTDPR NNVLFGVNIE GSMGMPLATD TLLVNNIDSG KYQNHIPGDL VANYNTSKDA QQELSSSMVS QSFGVPDMAF NSIDSTINDS ALLNRNSFAP APPPPLQRMR TYTKVYKRGA VGRSIDIARY SGYDELKHDL ARMFSIEGQL EDRQRIGWKL VYVDHENDVL LVGDDPWEEF VNCVRCIKIL SPQEVQQMSL DVDLGNNNLP NQACSSSDGG NVWRGHCDQN SGNPSAGSYD HFE // ID M0SDE1_MUSAM Unreviewed; 620 AA. AC M0SDE1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P10240_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P10240_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P10240_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P10240_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P10240_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr3P10240_001; -. DR EnsemblPlants; GSMUA_Achr3T10240_001; GSMUA_Achr3P10240_001; GSMUA_Achr3G10240_001. DR Gramene; GSMUA_Achr3T10240_001; GSMUA_Achr3P10240_001; GSMUA_Achr3G10240_001. DR OMA; AYRFMRE; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 150 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 69463 MW; 19C3CB5581CDBA9D CRC64; MDKILFIIHE NKYKTYKIIQ HVDHFYKSIP PWRVPHPLKP QGIIDSELWH ACAGPLVSLP PVGSLVVYFP QGHSEQVAAS MQKEINDIPK YPSLPSKLIC VLLDVTMHAD AETDEVYAQM TLQPVNKYDR EAMLASEMGL KQNKHPAEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FTMQPPAQEL VVKDLHDVSW TFRHIFRGQP KRHLLTTGWS VFVGTKRLSA GDSVLFIRDE KLQLLFGMRR ANRQQPALSS SVLSSDSMHI GILAAAAHAA TNNSPFTIFC NPRASPSEFV IPFAKYNKAM YTQVSLGMRF RMMFETEDSS VRRYMGTVTG ISDLDPVRWK NSQWHNLQVG WDESTATERR TRVSIWEIEP LATPFYLCPP PFFRRNFPEA PGVPDAHEVE NAFQRVMPWL NDDYGIKDTQ SALFPGLSLV QWMSMQQNHQ LMTPAAQPAH FPSAIASALQ NGLLLPQASA SHHVQLPPLQ QKSINLQQQQ FQQQEQGQLQ QPQSQPQPQQ LRPVAVQEAA DHQLMQHQTS SGQIVSQTHS SSQHLQPSLL QLQELQSSST IALSAQSIIA ISVAAASSST KSAVSRAAGF TTAVFTQWDQ GSIFIELSFN // ID M0SFY7_MUSAM Unreviewed; 201 AA. AC M0SFY7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19210_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19210_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19210_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19210_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19210_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19210_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr3T19210_001; GSMUA_Achr3P19210_001; GSMUA_Achr3G19210_001. DR Gramene; GSMUA_Achr3T19210_001; GSMUA_Achr3P19210_001; GSMUA_Achr3G19210_001. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 201 AA; 23217 MW; 1837DCAFB19695AE CRC64; MAQHHPQARA WESAMLLHHR YYHHLYHSEQ EEAPHEREHM FEKPLTPSDV GKLNRLVIPK QHAERYFPLD GGSAEGGLLL SFEDESGRVW WFRYSYWTSS QSYVLTKGWS RFVKEKKLDA GDVVLFERPR FGGRDHFYIG CRRQSPPPAH SMTVPDGPEP LSPTRRLRLF GVNFDCGPEP EPQPMTSASW FLPGNASSSQ L // ID M0SGH6_MUSAM Unreviewed; 412 AA. AC M0SGH6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21100_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21100_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21100_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21100_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21100_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21100_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr3T21100_001; GSMUA_Achr3P21100_001; GSMUA_Achr3G21100_001. DR Gramene; GSMUA_Achr3T21100_001; GSMUA_Achr3P21100_001; GSMUA_Achr3G21100_001. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 143 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 143 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 45419 MW; 43ED20E6667C6367 CRC64; MEGSCVDEAP SHSARCQQTP PHAGEALQRM GSGVSAVLDP TPESGMEAVS RKLSSSQYKG VVPQPNGRWG AQIYEKHRRV WLGTFGDEAE ASRAYDVAAQ RFRGRDAITN FKPLSDKRAQ GGGRVVSRRT TPSYLRSARL MLFDKVVTPS DVGKLNRLVI PKQHAEKYFP LESGSSVASK GVLLNFEDAG GRVWRFRYSY WSSSQSFVLT KGWSRFVREK NLKAGDVVTF WRSTGPEKQL FIDWRTDVIA SFRTMTPPPT VNPLRVVKLF GVDISGLLPV NGGDRKRGRE TELFPPSQKL TSMNRRGTRC PTNDEVKQGV GRRRRRRSPR RSFLVLGAEA PTPNSAITTT TTSTSRGIPA GTAKGTGPPN DAMRNVDVGA GRCKNRSSSH DRHVALRFGP DAAGNNRDEE SD // ID M0SH45_MUSAM Unreviewed; 820 AA. AC M0SH45; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P23290_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P23290_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P23290_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P23290_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P23290_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr3P23290_001; -. DR EnsemblPlants; GSMUA_Achr3T23290_001; GSMUA_Achr3P23290_001; GSMUA_Achr3G23290_001. DR Gramene; GSMUA_Achr3T23290_001; GSMUA_Achr3P23290_001; GSMUA_Achr3G23290_001. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 687 771 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 820 AA; 91173 MW; E6D5A738C7639F0A CRC64; MRLSSSGLGN QQQEDTEEQR CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEIDSLPSYR SLPPQLVCQL HNVTMHADVE SDEVYAQMTL QPLNPEEQKE PYLPTELGTA SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA MDLHGNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI GDLDPVHWPN SHWRSVKVGW DESTAGERQP KVSLWEIEPL TTFPMYPSPF PFRLKRPWPP GLPSLHGGKH DDFSLSSPVT WFRNGGNPGL QSLNFQGTGV TPWTQPRFDT TILGLPPDMY LTMAADGIQE TRTMDPTKQV SSAMLQFQQI QNTASMYSPM PPSQLLHHGQ SQLPQAFLQN IQLNQVQSQS QSEFFQHQLQ QQKFLSDHQQ VPSEASSRSF SDSNTNCVST SDASPLHNIL SQFSPGEASH LLSVSEPNIS QRSVMLPPFP GRECAVNQDG NMDARNQLLF GVNIDSSSLL MQNGMTSLCN VGRESDSTGM HYDASNFVGS SVHDFALSQA LTGSGGLEET GFLQSSQNAD QLNQKGGTFV KVSKSGSFGR SLDITRFSSY NELRSELGRM FGLEGQLEDP LRSGWQLVFV DRENDILLVG DDPWQEFVNN VWCIKILSPQ EVQQMGKHDV NFLNSGSIKM LPTNGCDDYI SRQDSRNLST RVASMGSLEH // ID M0SIV4_MUSAM Unreviewed; 263 AA. AC M0SIV4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29380_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29380_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29380_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29380_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29380_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29380_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr3T29380_001; GSMUA_Achr3P29380_001; GSMUA_Achr3G29380_001. DR Gramene; GSMUA_Achr3T29380_001; GSMUA_Achr3P29380_001; GSMUA_Achr3G29380_001. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 108 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 108 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 263 AA; 28718 MW; 9C6814F828C38E53 CRC64; MNSAQVACGE IGKRASPLVA GAKSLQRVGS GGSDVIDPEV GVEAESRKLP PSQYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNREAEAARA YDVAVQRFRG RDAITNLRPL NDADNNDDAA ELFFLGSHSK AEISPIGTQR QHLFDKAMTP SDVGKLNRLV IPKHHAEKHF PSYVLTKGWS RFVKEKGLGA GDVVTFQRST GPGKQLFIDS KSPVQIFRLF GVNIVRTPAA GSAACCGTGK RTRDRMELAS SQEMVKKQCT ESL // ID M0SJE9_MUSAM Unreviewed; 793 AA. AC M0SJE9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P31350_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P31350_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P31350_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P31350_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P31350_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr3P31350_001; -. DR EnsemblPlants; GSMUA_Achr3T31350_001; GSMUA_Achr3P31350_001; GSMUA_Achr3G31350_001. DR Gramene; GSMUA_Achr3T31350_001; GSMUA_Achr3P31350_001; GSMUA_Achr3G31350_001. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 206 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 206 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 85850 MW; 731A0770158E5B06 CRC64; MGGDKPGHCD DQSSPDFSLS LPHLPSDSCI DTEPAAARER ERERNPTPIS PSPTSGSSLS WICLSVLGLL GSLGLGRMGI DLNTIEEEEE EPEQHPAHLA VSAAAAAEEA FQSASVCLEL WHAEGGDGSG GRGGVGSGYD VPPHVFCRVV DVKLHADAAT DEVYAQLSLV VESEEFEGRP KKGELEGDAE EEDVECISRT SIPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHSMEWRFRH IYRGQPRRHL LTTGWSAFVN RKKLSSGDAV LFLRGNDGVL RLGVRRAAQF KGSGPVLEHQ SGNMNLLTLA AVADAVSNKK AFDIYYNPRA SSSEFIVPYW KFVKSLNTSI SAGMRFKILY EGDDATERRS TGLITGISDM DPVRWPGSKW KCLLVNWDDD MDANRQNRIS PWEIEPIGSV LGSGSLSTTG SKRAKICLPS VNMDFPIPNG NGCLDLRESA SFHKVLQGQE FTRLRTPSNI GVTASHVSEI GNRQYSDGKG RCTGANSCIV GESVTRDRVR TSYGADFSFN CTGFSEPVLF QKVLQGQEVF SKCPPFIGAR SDAHARNGVY GLFDRFHTSH AESRLPPSSL GYVTIVQPSL PPIQASSPSS VLMFQEAGSR MSLVQSASST NGQDRGDGGC YFSKLNGSEA LHQPEMDKVH ASVSDGKLGI GNEQNVNRNG CRLFGFSLTE KIPVANLADK SLPVSPASTQ VKVDTAFSAS MPQMPAKPVG CSCTGVNAVY ALYIFPFGCS NSSLLFVTFC YLTSLCCNIF SVC // ID M0SJQ8_MUSAM Unreviewed; 203 AA. AC M0SJQ8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P32440_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr3P32440_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P32440_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P32440_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr3P32440_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr3P32440_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr3P32440_001; -. DR EnsemblPlants; GSMUA_Achr3T32440_001; GSMUA_Achr3P32440_001; GSMUA_Achr3G32440_001. DR Gramene; GSMUA_Achr3T32440_001; GSMUA_Achr3P32440_001; GSMUA_Achr3G32440_001. DR OrthoDB; EOG09360L9E; -. DR Proteomes; UP000012960; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 203 AA; 22800 MW; 8B6E29380DD4E048 CRC64; MNLTFAVYSS LGSVLDLNVP ALDPDQAVDG LRFLLQKELR NSDVSQLGRI VLPKKEAESH LPNLTSRDGI AINMDDLENL QVWTFKYRFW PNNRSRMYIL ENTGDYVKEH HLELGDFIMI YKDDSKDRYV IRAKKAGSSE PSVAPADDGI FDSILPDIVV GSVRYSDLFL PLAEGMNVAY GYGLSYAFEE DFPMTFPDGS TGS // ID M0SKJ2_MUSAM Unreviewed; 718 AA. AC M0SKJ2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02750_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02750_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02750_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02750_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02750_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr4P02750_001; -. DR EnsemblPlants; GSMUA_Achr4T02750_001; GSMUA_Achr4P02750_001; GSMUA_Achr4G02750_001. DR Gramene; GSMUA_Achr4T02750_001; GSMUA_Achr4P02750_001; GSMUA_Achr4G02750_001. DR OMA; IVDYPFC; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 153 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 153 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 718 AA; 79864 MW; 856043C60A4FC47A CRC64; MGIDLNTIDE EEEEPEQPAY HAASPPAATP VDRALQVTPV CLELWHACAG PRIWLPKKGS LVVYFPQGHI EHFGEDGGRR GGVCRRDVPP HVFCLVVDVK LHADAATDEV YAQLSLLAES EEFELRMKKG EVEGNEEDED VECISRSSVP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKLQRPS QELIAKDLHG TEWTFRHIYR GISNRSKPLL LVFRCQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGNDGE LRLGVRRAAQ FKSGSPVSAH PSGNMNLATL TIIANSVSAR KVFHIYYNPR ATSSKFIVPY WKFLKSFNHL ISVGMRFRMI YESDDATERR STGLITGISD IDPIRWPHSK WRCLLPFHNK FSIAAEMRCS ACWQECICSL MQVNWDNDVD ANQQKRISPW EIEPIGPVIG SGSSTTAGLK RAKITLPSVN MDFPIPNGNG CPDLRESASF HEVLQGQEVT RLTPPICVVP HGKSDFSFNC TGFSESVGFQ KVLQGQEVFS KVPPFLGAGS DAHGRYGVYG LFDGLHAYHT QSRLPAASLG YVTLVQQSLP SIQAFPPSSV LMFQEANSKN LLFQPMHSMN CQDRGDNECY SAKLDGSKTK TLHREEANSP FRPATGRHFT NQQHKMVKVY APVLAGKSDL ENEKSASRKG FRLFGFSLTE KIPVTNLVDP PPPVSQTKTD VKADIAFSTS MPQMCPLC // ID M0SKT4_MUSAM Unreviewed; 294 AA. AC M0SKT4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03670_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03670_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03670_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03670_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03670_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03670_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr4P03670_001; -. DR EnsemblPlants; GSMUA_Achr4T03670_001; GSMUA_Achr4P03670_001; GSMUA_Achr4G03670_001. DR Gramene; GSMUA_Achr4T03670_001; GSMUA_Achr4P03670_001; GSMUA_Achr4G03670_001. DR OMA; IDWKEIT; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 107 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 107 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 32834 MW; FA0F33723693F0BC CRC64; MATSSIEEAC EETREWPPVA SKSLQRVASG GSEVIDPEGC VEAEFRKLPS SKYKGVVSQP NGRWGAQIYE KHQRIWLGTF NEEAQAARAY DVAVQRFRGR DAVTNFKPLN DADDEDAAEL FFLDSHTKHE IVDMLRKRTY HNELQQSKRS IGADNKKGIA GGAASKGVLL SFEDGCGKEW RFRYSYWNSS HSYVLTRGWS RFVKEKRLEA GDVVTFQRST GTDKQLFIDA KARSGVQVLR LFGVNIVRGP AAAIGEGGVD DNAVFCTTGK KNRDHITELV SSQGMFKKQR TEAL // ID M0SLN8_MUSAM Unreviewed; 350 AA. AC M0SLN8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06710_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06710_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06710_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06710_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06710_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06710_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr4T06710_001; GSMUA_Achr4P06710_001; GSMUA_Achr4G06710_001. DR Gramene; GSMUA_Achr4T06710_001; GSMUA_Achr4P06710_001; GSMUA_Achr4G06710_001. DR OMA; RCSKKQA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 98 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 143 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 98 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 143 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 38574 MW; 6EEAEFD36C9C2C1C CRC64; MRKTGPVPSP DPKSLQRVGS GASDVIDPEV GVEAESRKLP SSHYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEAEAACA YDVAVQRFRG RDAITNFKPL NDADNGDAAE LSFLDSHSKA EITAPRSAPV TGLLVGAQRQ HLFDKAVTPS DVGKLNRLVI PKQHAEKHFP LQKTGAAAAA GKGVMLNFED AYGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLEAGDVI TFHRSTDPEK QLFIDSTARA GRGSAVAPTQ RPPVQVVRLF GFNIVRNPAA PVGGDGVDGN AASCETGKRN RDHMKSISSQ RMIKRHCTEA FEENDSIRNF ISFFLYCSVL LIQSVHMDCL // ID M0SMS6_MUSAM Unreviewed; 714 AA. AC M0SMS6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10590_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10590_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10590_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10590_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10590_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr4P10590_001; -. DR EnsemblPlants; GSMUA_Achr4T10590_001; GSMUA_Achr4P10590_001; GSMUA_Achr4G10590_001. DR Gramene; GSMUA_Achr4T10590_001; GSMUA_Achr4P10590_001; GSMUA_Achr4G10590_001. DR OMA; QSPRLYE; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 714 AA; 78540 MW; 57340CC2A3842C3F CRC64; MGIDLNTIEE EDEEPEHPAH AAPPPAAAAV EDAFQGTPVC LELWHACAGP RIWLPKKGSL VVYLPQGHME HLGDGGGGGA DGGGRGGICR RDVPPHCLCR VIDVKLHADA ATDDVYAQLS LLAESEDFER RMKMGEVEGN EEGDDVECIN RSSVPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK LQRPSQELIA KDLHGMEWRF RHIYRGQPRR HLLTTGWSAF VNRKKLISGD AVLFLRGTDG ELRLGIRRAV QFKSSNPVSA HPSGNSTLAT LADIANAVST RKVFHVYYNP RANSSDFIVP YWKFVKSFNS SISVGIRFKM IYESDDASER RSTGLVTGIS DMDPVRWPGS KWRCLLVNWD VDADTNQQNR ISPWEIEPTG SVSGSGSLST VGSKRAKIGL PSVNMDFPIP NGNGCPDLRE SASIHKVLQG QEFMRLGRVR ISHGKSDSSF NRTGFSESIR FQKVLQGQEV FSRNPPFLGA PCDAHVRNGV YGQFDDVLTS RAESRLPIAP HGYVTLLQQS LPSIQAFSPS SVLMFQDASC VSLSAHSMPG MNYQDRGDEG CRFAMLNGSE PLHREESNFP SWPPTLACHF ANQQCKMVKV HDPVLDGKLD FENERSVSRK GCRLFGFPLT ERIPVANLVD KPPPVTPATS MPQMPAKPVG CSSALYALPF SCLVSDAFNS QLLCQCVRLY YLLSLCCSIL CSLV // ID M0SN86_MUSAM Unreviewed; 224 AA. AC M0SN86; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12210_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12210_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12210_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12210_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12210_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12210_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr4T12210_001; GSMUA_Achr4P12210_001; GSMUA_Achr4G12210_001. DR Gramene; GSMUA_Achr4T12210_001; GSMUA_Achr4P12210_001; GSMUA_Achr4G12210_001. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 24246 MW; 29039DA909F7AD0E CRC64; MPFAAPSSSS TSSVASDSAA PVEPEHMFDK VVTPSDVGKL NRLVIPKQYA ESQSYVMTKG WSRFVKDKQL ESGDTVSFGR ASAGASAGHG RLFIGWRRRK QTQCRPPLPL PQIFSAARSS APQWGGLFPF AVPPVYNMAS NHGQYGGGRP YSPPQVRVQP GGGVAGASLL LDSAAVIRGT AKTKRVRLFG VDLECSEREE RGDTRRDLQV LLLPKHSAME EWSC // ID M0SPY7_MUSAM Unreviewed; 607 AA. AC M0SPY7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P18240_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P18240_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P18240_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P18240_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P18240_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr4P18240_001; -. DR EnsemblPlants; GSMUA_Achr4T18240_001; GSMUA_Achr4P18240_001; GSMUA_Achr4G18240_001. DR Gramene; GSMUA_Achr4T18240_001; GSMUA_Achr4P18240_001; GSMUA_Achr4G18240_001. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 200 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 521 601 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 98 200 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 607 AA; 66625 MW; 1E6030A5C2B69914 CRC64; MLTFSKSMKE SSMKQSDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHT EHAQGLTDEV FAKISLVPLR PNEPDFGEDD GLGLSINGVD VQEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGEIWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTENG DLCVGIRRAK RGGIGGGPDI PSGWNPPDSV IEAATLAANG QPFEVVYYPR ASTPEFCVKA ASVKAAMRIQ WCPGMRFKMA FETEDSSRIS WFMGTISSVQ IADPVRWPNS PWRLLQVTWD EPDLLQNVNR VNPWLVELVS NMPAIHLAPF SPPRKKLRIP QHPDFPLEGQ LSTPMFPGNP LGHCTSPLFC FPDSTPAGIQ GARHSQFGIS LSDLHHNKLQ SGLFHAGFHR LNHTSSLSRI SAGVAVDSPA IDKNISCLLT IGNTSQSIKN PCNAKPQQLM LFGKPILTEE QISLSNSGDM VSPGATGYSS PDGNLEKTTK FPEASDLGLE TGHCKVFMES DDVGRTLDLS VFGSYEELYR RLADMFGIEK SEMMSHVIYK DAAGAVKLTG DEPFSDFMKT ARRLTILTDS GSDNIGR // ID M0SRJ0_MUSAM Unreviewed; 889 AA. AC M0SRJ0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23790_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23790_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23790_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23790_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23790_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23790_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr4P23790_001; -. DR EnsemblPlants; GSMUA_Achr4T23790_001; GSMUA_Achr4P23790_001; GSMUA_Achr4G23790_001. DR Gramene; GSMUA_Achr4T23790_001; GSMUA_Achr4P23790_001; GSMUA_Achr4G23790_001. DR OMA; CASAYEQ; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 435 536 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 658 708 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 435 536 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 806 830 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 889 AA; 98364 MW; 5B068B461760E6EC CRC64; MEAVIYANNS INLFHSNDIS WHLLISNICG WVDLISSLVP FLLVVMSSSS SAAVVTAKIC FNSECKEPLP DPLPTRRKGW RLRSGEIADL CDRCSCSFEQ GNFCETFHSD DAGWRNCKTC GKRVHCGCVV SVSTYVLLDA GGVDCVACAR KSLVMAPNQV ASSPMFMSQQ GPERREFPAK SWKPVSGPFF GQWRQAPHMW NMTSAQSDLQ QRLSYEFDRP NCIEKLAPGG RYSILAHEKK FENISEKPIT GNLNNVARER YANGKVGIDA ASTFGAYHGE GNADTVQDSC RLVGDSDSVS TRKSVNADPC STSSSGANLD AHPNSCVNSL PSSAIKEDSS SLGLAAVFQS TNCSKEPTRF SANQSQSQAD PLSKQFYPPS VIDPEVQSQM RNGKTRVDNR TRSQLLPRYW PRITDQELQQ ISGGGDSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPIISQPEGL PLKVQDASGK DWVFQFRYWP NNNSRMYVLE GVTPCIQAMQ LQAGDTVTFS RIDPEGKLIM GFRKASCGSS EQDSQAVKSG NGFSTPPEKQ RNCSNFANEG VLQKDGLSAR SSQGTRRKGG NLGSKSKRLR IENEDSMELK LTWEEAQQLL RPPPNCVPSV VLVEGHEFEE YEEAPVLGKR TYFTTNQSGE NYQWAQCEDC SKWRRLPVDA LLPSRWTCSN NTWDTERSLC SAAQELSLEQ LAELIPCKTG APKRSKVKVE TDNIEVSDGL DTLANLAILG EGENLPPSSQ PTTKHPRHRP GCTCIVCIQP PSGKGPKHKQ SCTCNVCLTV KRRFRTLMLR REKRQSEKEA ETARKQQKQQ PNQSSPVKAQ APQIDLNIQP EREEETSPKS ESEKRKEVLR HGSVRSYVTA ILSPTSNQI // ID M0SRV8_MUSAM Unreviewed; 235 AA. AC M0SRV8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P24970_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P24970_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P24970_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P24970_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P24970_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P24970_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr4T24970_001; GSMUA_Achr4P24970_001; GSMUA_Achr4G24970_001. DR Gramene; GSMUA_Achr4T24970_001; GSMUA_Achr4P24970_001; GSMUA_Achr4G24970_001. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 134 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 235 AA; 25778 MW; D208C3A880A1784B CRC64; MEFTTGRRDG FYIIGEESKH PSLCPLSSSS SSTPPISSAF RWHVGPSDSA SNGTGGGRRE SNFFTVKEHM FDKVVTPSDV GKLNRLVIPK QHAENQSYVM TKGWSRFVKE KRLDAGDIVS FGRGVGESGS DHLYIDWKPR LENHDIPRLP PLVPLTGPLL HNQAEAKRVR LFGVNLDSPE TQDDPGAPAD RSPSARRLRT CSTHPFPPFP RGSTESSAAS SSTSKEQHLT LDLGL // ID M0SS57_MUSAM Unreviewed; 801 AA. AC M0SS57; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P25960_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P25960_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P25960_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P25960_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P25960_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_009397956.1; XM_009399681.2. DR RefSeq; XP_009397957.1; XM_009399682.2. DR RefSeq; XP_018680638.1; XM_018825093.1. DR STRING; 4641.GSMUA_Achr4P25960_001; -. DR EnsemblPlants; GSMUA_Achr4T25960_001; GSMUA_Achr4P25960_001; GSMUA_Achr4G25960_001. DR GeneID; 103982691; -. DR Gramene; GSMUA_Achr4T25960_001; GSMUA_Achr4P25960_001; GSMUA_Achr4G25960_001. DR KEGG; mus:103982691; -. DR OMA; CENLPQR; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 704 788 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 801 AA; 90159 MW; E6ADD1FE348D6354 CRC64; MKLSTVGISQ QAPEEEEKRC LDSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAASTNK EVEGHIPNYP SLLPQLLCQL HNVTLHADVE TDEVYAQMTL QPLSPEEQKD AYFPMEMGIA SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRHAN RPQTSTPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSKYIKAVFH ARVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRTVQVGW DESTAGERQR RVSLWEIEPL TTFPMYPSLF PIGLRRSWHP GASFPHDNRE EFNTFMWPRG VPVDQGMYSL NLPSLGTGPW IQQRHETLLL GSEFDQYQAM CPLAFQDIRC GDILKQQFLQ NQQPIQFLQQ SCTSSSLFKP QDNQQQIVNP QPQCLTENHR HPVPYQQLQP PHTEQQKQLP QEANVYTQAF TMHNNHVQRQ SALPSPLFEN STIPDSSLNF SSVPTPISDQ DILGSAYREG NVSGSNYSRL NQSMINHPGQ KSWELNFTKS QMISFDGAAL LSSFPAKNST VGNDNFTDTQ TCTLFGFSKD SSSLLNSALS NSGTVNDVST MPYTSSCFQN SFYGYLDDSP SLLHGAGETD LQSQTFVKVY KSGSVGRSLD ISRFSNYEEL REELGQMFGI EGLLEDPLRS GWQLVFVDRE NDVLLLGDDP WESFVNNVWY IKILSPEDVL KMGKQGVDSF C // ID M0SSA5_MUSAM Unreviewed; 250 AA. AC M0SSA5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P26430_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P26430_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P26430_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P26430_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P26430_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P26430_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr4T26430_001; GSMUA_Achr4P26430_001; GSMUA_Achr4G26430_001. DR Gramene; GSMUA_Achr4T26430_001; GSMUA_Achr4P26430_001; GSMUA_Achr4G26430_001. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 250 AA; 27833 MW; 6F364359A0A2E0D3 CRC64; MELTHGKRES FYDTDQEDEQ VEFCRHPPFV PCSPSPSSLS TGVRSIDGMG NDSFILKEHM FDKVVTPSDV GKLNRLVVPK QHAERHLPMD ALANEKGLLL CFEDRTGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKGLDA GDTVSFSRGV GEAGRHRLYI DWKRRPQSRA LPRAGSSGVP SAPLVRGQAA VKRVRLFGVN LDCPDTEGDA NCRIRSTPPV GAPRFQPRTA PPLLEPSRAV GETLACSSSL // ID M0STC9_MUSAM Unreviewed; 249 AA. AC M0STC9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30170_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30170_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30170_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30170_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30170_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30170_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr4T30170_001; GSMUA_Achr4P30170_001; GSMUA_Achr4G30170_001. DR Gramene; GSMUA_Achr4T30170_001; GSMUA_Achr4P30170_001; GSMUA_Achr4G30170_001. DR OMA; IDCRRRA; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000012960; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 27705 MW; 313E25570C6EAF75 CRC64; MSEQEQEQLE VPEHPPFVTS CPSPSSSSTG FWWHDGSSGG GSGAVGSFVE KEHMFDKVVT PSDVGKLNRL VIPKQHAERY FPLDTLADER GRLLCFEDRT GKPWHFRYSY WNSSQSYVIT RGWSRFVKEK GLDAGDTVSF CRGVGEAGRH RLYIDSSGRV PMLLRSVPLV RDQAAVKRVR LFGVNLNCPE SRDEASHHHS DTLSVSLPQL HPRTAFPLLK PPHASGDTPP DSSSSSICKG KNTPLNLYL // ID M0SUI8_MUSAM Unreviewed; 909 AA. AC M0SUI8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00590_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00590_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00590_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00590_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00590_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_009399230.1; XM_009400955.2. DR RefSeq; XP_009399231.1; XM_009400956.2. DR RefSeq; XP_009399232.1; XM_009400957.2. DR STRING; 4641.GSMUA_Achr5P00590_001; -. DR EnsemblPlants; GSMUA_Achr5T00590_001; GSMUA_Achr5P00590_001; GSMUA_Achr5G00590_001. DR GeneID; 103983691; -. DR Gramene; GSMUA_Achr5T00590_001; GSMUA_Achr5P00590_001; GSMUA_Achr5G00590_001. DR KEGG; mus:103983691; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 775 859 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 909 AA; 100821 MW; 8CAE01C9396CC398 CRC64; MRLTSPTLTT QPQEEEPRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSAQEQKDP YLPADLGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELVAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL TKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPSSFP LRFKRPWPTG LPFFHGGRDD EFSLNSPLMW LRDGGNPALQ SLNFQGVGVT PWMQPRLGTS MLALQPDMHQ TVAAVALQEM QTMDLTKQVT PAMLQFQQPQ NTTSRSAPIL QSQILQHAQP QSHQPLLHTI QGNQMQSQAQ SQFLQHHLQQ GHSFAEQQQQ QQHNLQLQIP EHQQFQQQRV LPAYQQVPYG AANLSQLSSS SQSQSTTLNM ISPSSQLKDF PDSNGNSVSA SSVSPLDNIL HQISPEETSQ LLSLPRYAQP VTSNPWSSKR IAVESMLPSG AQSVLSQVEQ IGSGQPNIPL QSVVLPPFPG RECSVNQDGS MDIQNQHMFG VNIDSSISVQ NGIRSLGTGV NGTNSTNIVY AACNLLRSAG NDFPINQAVN GSNGLHESGL LQSTENVDQV NSQSGTFVKV YKSGSFGRSL DITRFSSYHE LRSELGHLFG LEGQLEDPLR SGWQLVFVDR EDDVLLVGDD PWQEFVNSVS CIKILSPEEV QQMGKQGVDF VNSAPIKRLQ SNGCDDYVSQ QHSRNLSAAR ITSVGSFKY // ID M0SV24_MUSAM Unreviewed; 828 AA. AC M0SV24; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P02450_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P02450_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P02450_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P02450_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P02450_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr5P02450_001; -. DR EnsemblPlants; GSMUA_Achr5T02450_001; GSMUA_Achr5P02450_001; GSMUA_Achr5G02450_001. DR Gramene; GSMUA_Achr5T02450_001; GSMUA_Achr5P02450_001; GSMUA_Achr5G02450_001. DR OMA; REYSAYQ; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 695 780 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 828 AA; 92358 MW; 0AD93056B20E0916 CRC64; MRLSSSGLPQ QTQEGEQKCL NSELWHACAG PLVCLPAIGS RVVYFPQGHS EQVAASTNKE VDGHIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSLEEQKEP YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNESNQ LLIGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSAFP LRLKRPWPSG LPSLHGGKDD DIGLNSSLMW LQDGERGIQS LNFQGFGMTP WMHQRCNSSI LGLQPDMYQA MASAALQEMR AVDFSKQATS TVMQFQQHQN ITNASAPLLA SQQLQSRPLQ QQEQEQLHPR SLQQQEQKPQ KQQIQQQQLS NQQIPNAMST LSQFASTSQA QTLSLQKMAS LCQQQNLPET IINRMSTSAV ESIPVLQSMQ PEVKQLGSQI NFSQNAVTVP PSSGRDCSLN QECGMDRQSN LLSSVNIDSS SLLVQNGMSN LRNFDNDTVS TLMPFVSTTG TDYALHQALT SSNCIEDSEF LQSPNSVGVM NPQNGTFVKV YKSGSFGRSL DITKFNSYPE LRSELGRLFG LEGLLEDPLR SGWQLVFVDR ENDVLLVGDD PWHEFVNNVS SIKILSPQEV QQMGKEGVDL LNAATNRRIP SHTSDEYISR QESRNLSNGM ASVGSLDY // ID M0SVH5_MUSAM Unreviewed; 559 AA. AC M0SVH5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P03960_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P03960_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P03960_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P03960_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P03960_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr5T03960_001; GSMUA_Achr5P03960_001; GSMUA_Achr5G03960_001. DR Gramene; GSMUA_Achr5T03960_001; GSMUA_Achr5P03960_001; GSMUA_Achr5G03960_001. DR OMA; IIAKDMH; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 180 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 473 553 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 180 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 559 AA; 61220 MW; 2A1AA92E4D196355 CRC64; MKQINKCLDS QLWHACAGGM VQMPAVNSKV YYFPQGHAEH AQGSVDFGTS QRIPPLILAT VTAVKFLAEP ETDEVFAKIR MVPLTADELE CGQDDALGLV IDGSNTQEKL ASFAKTLTQS DANNGGGFSF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTENG DLCMGIRRAK RGGVGGGPEI PSGWILPNGN YSVIEAATLA ARGQPFEVVY YPRVSTPEFC VKAASVKAAM RIQWCSGMRF KMAFETEDSS RISWFMGTIS SVQIADPVQW PNSPWRLLQV TWDEPDFLQN VKCVNPWLVE LVSNMPTIHL APFSPPKKKI CISQYPDFCL EGQPPLPMFL RDPLGHGTSP LCCFPDSAPA GIQGARHAHF GVSLSDIHLN KLQLGLFHAG VHRLDQTTPP SRTTTGLIID NPAILLFGKT ILTEDQISLS NSGDMVFPGA TGNSSADGNL EKTTNMSDLG LETGHCKIFM ESVDVGRTLD LSMFESYEEL YTKLADMFGI GKSEIRSHMI YNDAAGAVKH TGDEPYSEFM KTARRLTIST DSGSDDIGR // ID M0SVT0_MUSAM Unreviewed; 871 AA. AC M0SVT0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05010_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05010_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05010_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05010_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05010_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr5T05010_001; GSMUA_Achr5P05010_001; GSMUA_Achr5G05010_001. DR Gramene; GSMUA_Achr5T05010_001; GSMUA_Achr5P05010_001; GSMUA_Achr5G05010_001. DR OMA; LLTKGMM; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 738 822 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 39 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 871 AA; 98035 MW; 5A0753F55FC51087 CRC64; MMRTIVPISH TFLTIAYEKE ALLASELALK QTRSPTEFFC KTLTASDTST HGGFSVPRRA AEKIFPALDF SMQPPAQEIQ ARDLHENLWT FRHIYRGQPK RHLLTTGWSL FVSGKKLFAG DSVLFIRDEK QQLLLGIRRA NRQPTSISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRACPSEFVI PFAKYQKAVY SNQIFLGMRF RMLFETEESG TRRYMGTITG ISDLDPVRWK NSQWHNLQVG WDESAAGERH NRVSIWEIEP VIAPFFICPP FFRKRTRQPG MLDDESSEME NIFKRAMPWL GEETCIKDSE TQSTVMPGLS LVQWMNMQQN PSLASQTLQT EYLCSLAGPV RNLGTTDLSR PLGLQASKQN NIIQPQVLIQ IQLQQQQHQP QQEPPTMIQN KELLQTSLHQ NQQQHPQQLL LQQQKQQQQH QDQQLEQQYQ PQPSRILAVN QQLSDQQQSS FSQPRMQQPP FPQIQESQKT LPDVLQQLLN SHSLVQQPMI PQPSEGTQSG FTNDNPFCST SPSANNGAIL PHSILNGIQN YTLESTEKTS QSPLTPFSKV QNQGVIAPQT CVGNTTQMDY LDTTSSATSV CLSQTDGPLH KIFPLSSFNQ PSMLRVAPTY GDVQGTDPGD NVPFGDNIDS SLELPLTIDT MLANSIDSGK YQNRITRDVV ANYNASKDAQ QDLSLSMVSQ AFGIPDMAFN SIDSTTNENV FLTKSSWTPV PPPLQHMRTY TKVYKRGAVG RSIDITRYSG YDELKYDLAR MFSIEGQLED RQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSIDV DLENNSLLNQ ACSSSDGGNA WRGHHDQNSG NLSAGSYDHF E // ID M0SX74_MUSAM Unreviewed; 322 AA. AC M0SX74; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09950_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09950_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09950_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09950_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09950_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09950_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr5P09950_001; -. DR EnsemblPlants; GSMUA_Achr5T09950_001; GSMUA_Achr5P09950_001; GSMUA_Achr5G09950_001. DR Gramene; GSMUA_Achr5T09950_001; GSMUA_Achr5P09950_001; GSMUA_Achr5G09950_001. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 146 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 146 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 322 AA; 35809 MW; 69CE4246AA66EBA3 CRC64; MDTSSLEDAC SEIEKQSPPP RPRPPPPAPP KGLRRLGSGA SVVLEPEISI EAESRKLPSS QYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAAQRFRGRD AVTNFKPLVE TRDEDTAELS FLNSHSKAEI HREHLFDKAV TPSDVGKLNR LVIPKQHAEK HFPLNQTGAA ACKGVLLNFE DACGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLRAGDV VTFQRSTGPE KQLFIGWKTR TAGAHTADGV QATKPPVEVV RLFGVNIVKI PAAVSGDVSD RSGVGWAAKR TRDMDLISSL ELFKKQCREE GS // ID M0SXA1_MUSAM Unreviewed; 272 AA. AC M0SXA1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10220_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10220_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10220_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10220_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10220_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10220_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr5P10220_001; -. DR EnsemblPlants; GSMUA_Achr5T10220_001; GSMUA_Achr5P10220_001; GSMUA_Achr5G10220_001. DR Gramene; GSMUA_Achr5T10220_001; GSMUA_Achr5P10220_001; GSMUA_Achr5G10220_001. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 74 144 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 272 AA; 29552 MW; AB11C051961749AF CRC64; MEFSIRRDGF YMTEEEKQEE NSKYLSFVPL SSSFSSSSTS NAFRWHVGPS DSVGRSASDG CNESNFFTGK EHMFDKVVTP SDVGKLNRLV IPKQYAENQS YVMTKGWSRF VKEKRLDAGD IVSFGRGVGD SGGDHLYIDW KRRPDNHDLP RLPRIPLAGV SLGRPSGPGD QFLFFGSSLA GPPQFGVQQG SGPPMAFVNS LPLLGNQSAA KRVRLFGVNL DCPESGGVPA SASQLQLSSS LPFLPFPHES IGSSAAPSST SKEQHLSLDL DL // ID M0SY14_MUSAM Unreviewed; 211 AA. AC M0SY14; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P12850_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P12850_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P12850_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P12850_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P12850_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P12850_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr5T12850_001; GSMUA_Achr5P12850_001; GSMUA_Achr5G12850_001. DR Gramene; GSMUA_Achr5T12850_001; GSMUA_Achr5P12850_001; GSMUA_Achr5G12850_001. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 131 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 211 AA; 23817 MW; EAA9FD5F8CD0A08D CRC64; MEFLLERKES FYITDKEEES SKQPPFNPPS SSPSLASTAF KWHDSSSGGG GDFSFMEKEH MFDKVVTPSD VGKLNRLVIP KQHAENQSYV MTKGWSRFVK EKTLGAGDTV SFGRGVGDAA RHRLYIDWKR RPERLPLVHD HAAVKRVRLF GVNLDCPDRG DDANYHRSVR QLHPTTALPF LQPLRAESQT LLASSSSQMS NQQRSPLDLC L // ID M0SYD2_MUSAM Unreviewed; 666 AA. AC M0SYD2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14030_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14030_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14030_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14030_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14030_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14030_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; M0SYD2; -. DR STRING; 4641.GSMUA_Achr5P14030_001; -. DR EnsemblPlants; GSMUA_Achr5T14030_001; GSMUA_Achr5P14030_001; GSMUA_Achr5G14030_001. DR Gramene; GSMUA_Achr5T14030_001; GSMUA_Achr5P14030_001; GSMUA_Achr5G14030_001. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 552 645 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 552 645 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 666 AA; 75005 MW; 940A41E5D41C7E19 CRC64; MRKVDAVSCC CCYCLVAVKR CLRFWPQIKG WRGLPQGGRR AEGCATVGRI GVSPCVCLSL SLSLSRTPTH TGGDCDTICR IQLPVLFAYA HPKGKMMLIA VVDLFNRREL FFHPMVLLGS RYCLQRRHTE RERERERERD TESARXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRERERE RERERDTESA RNQTPTRRSR RTNVVSSSSS MRDPLAGSST AQPTHRKTSP GKLAVNCEKR DKTNIRSPTT VQQSLEHATQ EKIVPIEHAM QEKIVPLSGN RFFTCILSTT SCYMYRMALP KRIRELLPLS TVPVVLSYGS RTWEVIYCGD QSFQRFGQGW KNFVTDNNLK EGDGCVFELM DTENIQFKVQ ILRGDLPAFR AGGGDGQSSD EVIVID // ID M0SYJ2_MUSAM Unreviewed; 551 AA. AC M0SYJ2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14630_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14630_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14630_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14630_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14630_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr5T14630_001; GSMUA_Achr5P14630_001; GSMUA_Achr5G14630_001. DR Gramene; GSMUA_Achr5T14630_001; GSMUA_Achr5P14630_001; GSMUA_Achr5G14630_001. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 450 530 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 88 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 551 AA; 60700 MW; 0D1DAFBDD7C111D3 CRC64; MKEPPSMKQT DKCLDSQLWH ACAGGMVQMP AVNSKVYYFP QGHAEHAQGV VDFGTSRRIP PLILCRVTAL KFMADQETDE IFAKIHMTVH AKDVHGEIWK FRHIYRGTPR RHLLTTGWST FVNQKKLVAG DSIVFLRTKD GDLCVGIRRA KRESKLMRGN GNGGSFSSGG GTRIGGRVRA DSVIEAATLA AHGKPFEVMY YPRASTLEFC VKAASVKAAM RIQWCPAMRF KMAFETEDSS RISWFMGTIS SVQIADPVRW PNSPWKLLQV TWDEPDLLQN VNCVNPWLVE LVSNMPAIHL PPFSPPRKKL RIPQHSDFPL EGQLPTPMFP GNPLGHSTSP LCCLPDSTPA GIQGARHAQF GIPLSDLHLD KLQSGLFHAG FHRLGYPTSL SKISTGLIID MLFGKQILTE EQISLSNSGD MVSPGATANS SSDGNLEKTT NLSDELGLET GHCKVFMESD DVGRTLDLSV FASYEELYGT LADMFRIKRS EMTSHVIYKD ATGAVKHTGD EPFSDFMKSA RRLTILIDSG SDNTGRSTLP GSLDANLPCC S // ID M0SZ05_MUSAM Unreviewed; 210 AA. AC M0SZ05; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P16260_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P16260_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P16260_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P16260_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P16260_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P16260_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr5P16260_001; -. DR EnsemblPlants; GSMUA_Achr5T16260_001; GSMUA_Achr5P16260_001; GSMUA_Achr5G16260_001. DR Gramene; GSMUA_Achr5T16260_001; GSMUA_Achr5P16260_001; GSMUA_Achr5G16260_001. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 210 AA; 23422 MW; 9BD24ED5CA0896D0 CRC64; MSNDASCHLQ SVPEVNFHGP ATYSIETSNG MRTYEENGNA PGFLSGKDFS KLDGSVRSIL QDVPGIDTPQ GNSIRYGMML DALPVEDEDA VCMRSQNLEP VEVDNMDLDD LSLANSFCFR LTLSSSNRCQ LALPLGIPFH MRQERKDIIL RDPSGRSWPV LYHESNQFIG FLNGWEEFAT ANNLQQGNLC EFFVVTGAPD PTFQVQIRHT // ID M0SZN3_MUSAM Unreviewed; 519 AA. AC M0SZN3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P18540_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P18540_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P18540_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P18540_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P18540_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr5T18540_001; GSMUA_Achr5P18540_001; GSMUA_Achr5G18540_001. DR Gramene; GSMUA_Achr5T18540_001; GSMUA_Achr5P18540_001; GSMUA_Achr5G18540_001. DR OMA; CKKMELE; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 425 505 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 70 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 519 AA; 57831 MW; F91587CC310AADC2 CRC64; MKDTDKCLDS QLWHACAGGM VRMPAMNSRV YYFPQGHAEH SQGFMADLET DEVFAKIRMA PIRNPPVQNV IAKDVHGKVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGNDSHSV FSRGIRGRGQ VRSDSVVEAA THAANGQPFE VVYYPRASTP EFCVKAAAVK AALRIQWYPG MRFKMAFETE DSSRISWFMG TISSVQVADP IRWPNSPWRL LQVTWDEPDL LQNVKRVNPW LVELASNMPA INLGHLPPPI KKQRVLQQPP FEGQFPVPMV SGTPSVPRGS PYCCFSDSAP AGIQGARHAQ FDISLSDLHL NKLQTGLFHA GFHRLDHATP PSRISTGVIV GNPTIHDKPI LTEQQISLCK SETMIFDDVT GTSSSDGNLE KATNVSDALE LIIEAEHCKV FMESEDVGHS LDLSVFGSYE ELYERLGDMF GIEKSEMITH MFYKDAAGAL KHAGDEPFSN FMKTARRLTI LTDSGNATQQ GRESLLPIV // ID M0T063_MUSAM Unreviewed; 337 AA. AC M0T063; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20340_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20340_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20340_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20340_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20340_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20340_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr5T20340_001; GSMUA_Achr5P20340_001; GSMUA_Achr5G20340_001. DR Gramene; GSMUA_Achr5T20340_001; GSMUA_Achr5P20340_001; GSMUA_Achr5G20340_001. DR OMA; HMPPLAS; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 83 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 37096 MW; F1CAA3628CF47076 CRC64; MYYCTTKISP SFCKGDLKMA FAHGRDMFDF TEQEEAWKHA PFLLSSSSTS SPSSSSAPFR WNDGSSSSSR RGDDSFIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDAEAHGKGL LLSFEDRNGE SWRFRYSYWS SSQSYVMTKG WSRFVKEKRL VSGDTVSFGR GVGESGRDLL YIDWKRRPEN HGATRASRIS FHGASFAQSA GPWGGHLFMP RPPPPPPATV YDHHRLGYGY NLQPGGGGGS PMAHDSVSVV HSQATAKNVR LFGVNLVCTG TESKANGSNQ GASFSCLRSQ EASTLPLLQF QHSSAESSLV SSSSTSKEQH SSLDLDL // ID M0T1Y3_MUSAM Unreviewed; 807 AA. AC M0T1Y3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26580_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26580_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26580_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26580_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26580_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr5P26580_001; -. DR EnsemblPlants; GSMUA_Achr5T26580_001; GSMUA_Achr5P26580_001; GSMUA_Achr5G26580_001. DR Gramene; GSMUA_Achr5T26580_001; GSMUA_Achr5P26580_001; GSMUA_Achr5G26580_001. DR OMA; HNIGETG; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 674 758 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 807 AA; 89945 MW; 030DF1300CA5B5AD CRC64; MRLSSSGPGN QQQEDTEEQV CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEIDSLPSYP SLPPQLVCQL HNVTMHADVE TDEVYAQMTL QPLSLLEQKD PYLPAELGMP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFL QQPPAQELTA KDLHGNEWRF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDIDPVHWPN SHWRSVKVGW DESTAGQRQP RVSLWEIEPL TTFPMYPTSF PFRLKRPWPT GLPSLHGGKD DGISLNLPQM LFQNGGNTGF QSLNFQDISV TPWMRPRLDN PVLSLQPDMY QTMAVAGQKM RIVDTTKNVS PGMLQFQQTQ NITSRTSPIV PSQVLQHGHS QTPQTFLQNL QVNQQQVPRQ HQTQIQQQKI LSNHQKNISS FSQPQNFPDS NGNSVSTAIQ CMMPQVEQLG ASQPAISQHS VILSPFPRRQ YVVDQDGNMD GQNHLLFGVN IDSSSLLVQN GMSNLGHLSN ETDSMNMHYA ASNLVGSSGN DFGLNQAFTV SNGLEPPGLL QAPGNMDSLN QSSGTFVKVY KSGSCGRSLD ITKFSSYHEL RSELGRLFGL EGQLEDPLRS GWQLVFVDRE NDILLVGDDP WQEFVNNVWC IKILMRQEVQ QMGKPSADFL NTAHSKRLPS NSCDEYITRQ DSRSLSTVTA SVGTLEY // ID M0T2B7_MUSAM Unreviewed; 580 AA. AC M0T2B7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P27930_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr5P27930_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P27930_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P27930_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr5P27930_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr5P27930_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr5P27930_001; -. DR EnsemblPlants; GSMUA_Achr5T27930_001; GSMUA_Achr5P27930_001; GSMUA_Achr5G27930_001. DR Gramene; GSMUA_Achr5T27930_001; GSMUA_Achr5P27930_001; GSMUA_Achr5G27930_001. DR OMA; WRECISC; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000012960; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 346 447 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 346 447 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 580 AA; 64021 MW; FD23EF57B4DB143F CRC64; MATRRCMNAA CGVTEPGGEW RRGWGLRSGG FAMLCVKCGL AYEQLAFCDI FHQKESGWRE CSSCGKRLHC GCIASKSSFD LLDIGGVQCI GCMKNPEAPF VRSEVVQNFL SQHHQAVFAL STRCSKENDT DTAVVSRACE MSTTTADSKI DVGAFVKGKG MSNVDVEQSE SEIRSFGHIK WEQQSPDIGI ASFSNRYQGP VVSSQISQLD EKDFVIDKSI SESLAQACLS MSLGNTNQGS NMESCSSAER PLLALPMACS VAEGKDERKS LSFFQQLPRA RFLAKPPKTS NRAFSDASRS ALPYMRVARP PAEGRNQLLP RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPHISQPEG VPLTIQDTKG KEWHFQFRFW PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPAGKLV MGYRKATNTV PLQQDSQISA IANGTFGNET LFSGVNENIS TVSGYSGFLR WHKGGMPNEG LQLQPLQKRS RNIGTKSRRF LMDTEDALEL KLTWEEAQEL LRPPPSAKPS IVTIEDHEVE EYEEPPVFGK KTIFTARSSG // ID M0T390_MUSAM Unreviewed; 316 AA. AC M0T390; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01420_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01420_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01420_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01420_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01420_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01420_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P01420_001; -. DR EnsemblPlants; GSMUA_Achr6T01420_001; GSMUA_Achr6P01420_001; GSMUA_Achr6G01420_001. DR Gramene; GSMUA_Achr6T01420_001; GSMUA_Achr6P01420_001; GSMUA_Achr6G01420_001. DR OMA; CIDDNTS; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 113 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 141 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 113 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 141 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 35427 MW; ADA133A91A3F982E CRC64; METSGSEQVC SETEKQSPPP RPSPGGLLRL GSGTSVVLDP EVILEAKLRK LPSSQYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDAEIVDM LRKHTYYDEL QQSRRNSGAD RSKPCPSHEE TFGRVYREHL FDKAVTPSDV GKLNRLVIPK QHAEKHFPLQ QTSDAACKGL LLNFEDACGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKEL RAGDVITFQR STGPENQLFI GCRRRSVGRY AAAGVHAPTT PVEAVRLFGV NIVKIPVAVS GGVMDGDGIG WNGKRSRDMG LISSRELFKR QSTQAL // ID M0T3C2_MUSAM Unreviewed; 1039 AA. AC M0T3C2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01740_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01740_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01740_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01740_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01740_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P01740_001; -. DR EnsemblPlants; GSMUA_Achr6T01740_001; GSMUA_Achr6P01740_001; GSMUA_Achr6G01740_001. DR Gramene; GSMUA_Achr6T01740_001; GSMUA_Achr6P01740_001; GSMUA_Achr6G01740_001. DR OMA; TGARDEM; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 259 286 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 156 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 912 995 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 156 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1039 AA; 116022 MW; AD2AF6D2898090BB CRC64; MVVAGEKTTI NKELWHACAG PLVALPPVGS LVVYFPQGHS EQVMQNTRYK EPTQLTGFFH RSFSYSPVLF SCNAIFSFTI TLLSSMQKDI DAHIPNYPNL PSKLICLLHN VTLHADPDTD EVYAQITLQP VNTYDKEALQ TSDLALKQTR PQTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELQARD LHDNLWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRYNVLSC FSFFTCKHMI SYISFILFLL FPHFSSIIFS EFYILFHSIR RANRQPTNLS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRTSPSEF VIPFAKYQKA IYSNQVSLGM RFRMMFETEE SGTRRYMGTI TEISDLDVVR WKNSQWRNLK VGWDECAAGE RPSRVSIWNI EPIAAPFFIC PPPFFRKRPR QPGIPDDESS EMENLFKRAI PWLNEEICIK DSQSQNAIMP GLSLAQWMSM QQNPSLANSA MQNECLRSLS GPVVQNLGST SPLTQNQASL LQSQSLVQPS VQQQCPVIQN PQVLQTSLLQ TQPQRPEQPV PLQQQQSRIP VDIANQPNKQ LQVSDPRIQF QLVQKLQQQP SLLSQPKVQE TQLHQIQEQQ KTLLEVSQQL LDSPRSLAQP HVTPRQGAKM TSPGVQLPQS LQTQSQQKLQ QQQVLLADLP GITFPATSAT NPILANGSSL LATGGAHSST LNWTRLRNPV STEKNQLVTM LSPSSFEASV ANLNIAKELP KAVQDLKPSV PISKVQSQGA VDPQAYINDA VQLDYLDTTS SATSVCLSQT GTFPLTSFNQ PSMLRDIPPD DDVQGTDPRS SALMGVNNHI PGNMISNYNI SNDVHQELSS SLVSHSFGVP DLAFNSIDST INENSLLNAS CWAPAPPLQR MRTYTKVHKR GAVGRSIDIT RYSGYDELKH DIARMFSIGQ LEDLQKIGWK LVYVDHEKDV LLVGDDPWEE FVNCVQCIKI LSPQEVQQMS LTGDLANNIL PKQACSSSEG GNGWMGQRDH NSGSYDHLE // ID M0T4M0_MUSAM Unreviewed; 239 AA. AC M0T4M0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06220_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06220_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06220_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06220_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06220_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06220_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P06220_001; -. DR EnsemblPlants; GSMUA_Achr6T06220_001; GSMUA_Achr6P06220_001; GSMUA_Achr6G06220_001. DR Gramene; GSMUA_Achr6T06220_001; GSMUA_Achr6P06220_001; GSMUA_Achr6G06220_001. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 27128 MW; 0FC59259DCD4E9E9 CRC64; MGTTETMSYE EQRRRRLEEN KKKLEQLNLP HLSVALRDAA ASPKTSPAKQ IKRKMSRDAS LTPVRRSVRV ASLPEPNYRE NLSLIYISIR IARVLKRRGL DDRVYASDEA REYAQTKAEE IEAGLDPKFP SFVKSMLQSH TTGGFWLGLP IIFCNKHLPK RGATITLIDE NGDESDTTYL AHKRGLSGGW KGFSINHELV HGDAVVFQLI KTTTFKVYII RASEYDSILF CLYGIIITI // ID M0T4Y8_MUSAM Unreviewed; 655 AA. AC M0T4Y8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P07390_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P07390_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P07390_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P07390_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P07390_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr6T07390_001; GSMUA_Achr6P07390_001; GSMUA_Achr6G07390_001. DR Gramene; GSMUA_Achr6T07390_001; GSMUA_Achr6P07390_001; GSMUA_Achr6G07390_001. DR OMA; INSHLYW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 535 617 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 655 AA; 73054 MW; D08FFF30B4CB80FA CRC64; MAMGPPNCSV GVGSSGNGLS KELWHACAGP LVTVPCQGER VYYFPQGHME QLEAPSDQEN EQKMPLFNLP SKILCKVIHV DLHAEPDTDE VYAQITLLPE INQQGEVTTP DPPLPEAERC TVHSFCKILT ASDTSTHGGF SVLRRHADEC LPPLDMSQNP PSQELVAKDL HGNEWHFRHI FRGHPKRHLL TTGWSVFVSA KQLVAGDAFI FLRGENGELR VGVRRLMKQQ NNMPSSVISS HSMHVGVLAT AAHAFSTGTR FSVFYKPRTN RSEFVISVNK YLEGKNKKIS MGMRFKMRFE GDEAPEKRFS GTIIGMGDTK TSIWADSEWR SLKVRWDEHS SIMRPDKVSP WELVPLVAAT HLTSQPVQRS KRARPPGSPE LWKSPEETTQ NYSVSETQSS SFSAASKFDT IGFSAKTGTS TVTNSPIYRP IRTSAQTKSF LTSINEGPNE TKKEATMGCR LFGIQLIESA ATEEISPVVT ISSIAEDQPL TSLIVDSDRQ SQPSNVNRSD NPAISSEVDK SCLKSPQETY SRQTRSCTKV HMQGFAVGRA VDLTRLNGYD ELLHKLEEMF SIERELTGAV NKWVIVYTDD EDDIMLVGDD PWNEFCSIVR KIHIYTCEEA KRLSPKIKLP VIRGDINFRV KKASSGADDY KNHPQ // ID M0T558_MUSAM Unreviewed; 824 AA. AC M0T558; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08090_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08090_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08090_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08090_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08090_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P08090_001; -. DR EnsemblPlants; GSMUA_Achr6T08090_001; GSMUA_Achr6P08090_001; GSMUA_Achr6G08090_001. DR Gramene; GSMUA_Achr6T08090_001; GSMUA_Achr6P08090_001; GSMUA_Achr6G08090_001. DR OMA; HESAYTD; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 689 771 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 824 AA; 91345 MW; 557ED9E6F0DE7978 CRC64; MASSEVSVKG SSQGRGDTVS SGCSELHDGA PVRGSDTEGS LGLSGGAVGG KDSVDALYTE LWHACAGPLV TIPRVGERVF YFPQGHMEQV EASTNQVADQ QMPVYNLPWK ILCRVMNVHL KAEPDTDEVF AQITLLPDSK QDENTVEKDT LQPPPPRPHV YSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSQQPPS QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGDNGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTCPT EFIVPFDQYV DSIKNNHSIG MRFKMRFEGE EAPEQRFTGT IVGIGDSEPS RWPGSKWRCL KVRWDEASSI PRPDRVSPWK IEPAQLPLPP NPIPMPRPKR PRTTAFPSSP DSSVLTKEAS SKVSMDPSQS HGVPRVLQGQ DMATLRSTFS NEADTAQKPI MWLTHDEEKN DVSAQRRLGS ESWMHIKRQE PMYTDMLSGF QPSGDSSGFH SPFLEQASGD KFFLKPHFRD QEAKHNCSPG LWSLMPSNSN LNLGECNLKM TAHVGELSFQ KSSDWLGCSL PDSQTDNMPQ HRVITLQPLV PSQNDVAKYK ANNSGCKLFG FHLNSKPVAS ESAAKHSESC IAAKLVSATL TNGDTEKLIQ VCPQASKDVQ NKMQGGSTRS CTKVHKQGIA LGRSVDLTKF NGYDELIAEL DQMFEFEGAL IAPNKIWLVV YTDNEGDMML VGDDPWNEFC NMVRKIYIYT REEVQRMNPG TLNSRVEESP AVSEERISGK ETKRPVPTAN SENSEGCPGV DAAF // ID M0T5N7_MUSAM Unreviewed; 289 AA. AC M0T5N7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09880_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09880_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09880_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09880_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09880_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09880_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr6T09880_001; GSMUA_Achr6P09880_001; GSMUA_Achr6G09880_001. DR Gramene; GSMUA_Achr6T09880_001; GSMUA_Achr6P09880_001; GSMUA_Achr6G09880_001. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 190 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 190 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 32230 MW; F7A3E1BB420890AD CRC64; MEGGCVEEVS SDSEKRLQVA PQHFVTEVLQ RMGSGVSVVL DPTPEGGMKA ESRKLPSSRY KGVVPQLNGR WGAQIYERTR RVWLGTFSDE AEAARAYDVA AQRFRGQDAT TNFHPLSETH DDEAAELTFL LAHSKAEIRR TPNDLRSVRD LLFEKVVTPS DVGKLNRLVI PKHHAEKHFP SKSSSSMAQS YVLTKGWSRF VKEKNLKAGD VVSFWRSTGP EKRMYIDRRA GGVVCDRSAP PAIGQLPVVK LFGVDISELP ASGGDAKRGR EMELFPPSQF FERQFIEAL // ID M0T6A8_MUSAM Unreviewed; 137 AA. AC M0T6A8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12100_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12100_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12100_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12100_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12100_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12100_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P12100_001; -. DR EnsemblPlants; GSMUA_Achr6T12100_001; GSMUA_Achr6P12100_001; GSMUA_Achr6G12100_001. DR Gramene; GSMUA_Achr6T12100_001; GSMUA_Achr6P12100_001; GSMUA_Achr6G12100_001. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 137 AA; 15671 MW; 661AEBD1B2B56E8F CRC64; MIVPDTVPVE DKEENAFCLR SQDLKAVKIE NMDLDNLSSA TLFCFSLTLS SNTRCLLELP QKLPVNNGKK RQKVIILLDP SHRSWPVMYH ESTWFIGFTS GWNEFATVNN LQRGSLCEFF VVAGKFEPTF QVQMSQH // ID M0T6H6_MUSAM Unreviewed; 696 AA. AC M0T6H6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12780_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12780_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12780_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12780_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12780_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_009404302.1; XM_009406027.2. DR RefSeq; XP_009404304.1; XM_009406029.2. DR RefSeq; XP_009404305.1; XM_009406030.2. DR STRING; 4641.GSMUA_Achr6P12780_001; -. DR EnsemblPlants; GSMUA_Achr6T12780_001; GSMUA_Achr6P12780_001; GSMUA_Achr6G12780_001. DR GeneID; 103987665; -. DR Gramene; GSMUA_Achr6T12780_001; GSMUA_Achr6P12780_001; GSMUA_Achr6G12780_001. DR KEGG; mus:103987665; -. DR KO; K14486; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 562 655 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 76915 MW; 54C541FC0862C38D CRC64; MSVANVNISS GTSGDVLYKE LWHACAGPLV TLPRENERVY YFPQGHMEQL EASTNQGLDQ HVPVFNLPSK ILCRVVNVEL RAEPDTDEVY AHIILLPEPN RGEVTSPDPP FSEPERCKVY SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMTQDPPCQ ELVAKDLHRN EWRFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AITTGTLFSV FYKPRASRSE FIISLNKYIE AKSHKFSVGM RFKMRFEGDD TPERRFSGTI VGAIDKVSSQ WADSEWRSLK VQWDEPSSTL RPDSVSPWEL EPLIAAAPPS AQPVQRIKRA RLPASPVGTP GPSPTPGSWK SQVETTQMFS FSGPQRGEEP YSSYKPACIF SSASQSGSIG FNASNAPSTA INSHAPSTAI NSRLCWPIMT ETQSDTFSAS INREPCDRKQ ETSKGCRLFG IQLIESSGMG EMSPVPTISG VGVDQPAISL EVDSDLQSRP SNIERSDAPA DNSEPEKLCL RSSWETQSRQ PRSCTKVHMQ GMAVGRAVDL TRLCGYDDLL YKLENMFSIE GELSGAVKKW VVVYTDNEDD MMLVGDDPWL EFCSMVRKIY IYTSEEAKRL SPKRKLPPVI GEVVKSGSKK ALFDADADTN AAAGLKGLGG QDDVSG // ID M0T6L2_MUSAM Unreviewed; 247 AA. AC M0T6L2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13140_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13140_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13140_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13140_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13140_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13140_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P13140_001; -. DR EnsemblPlants; GSMUA_Achr6T13140_001; GSMUA_Achr6P13140_001; GSMUA_Achr6G13140_001. DR Gramene; GSMUA_Achr6T13140_001; GSMUA_Achr6P13140_001; GSMUA_Achr6G13140_001. DR OMA; SSHNHHN; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 247 AA; 28072 MW; E737CB6B3F3E8A57 CRC64; MSQQQQQQQQ QHHHGTWPRE PAMHLYHHPC QLEQREGHHE REQMFEKCLT PSDVGKLNRL VIPKQHAEKY FPLDGNSGEK DLALSFEDET GKPWRFRYSY WSSSQSYVLT KGWSRFVKEK KLDAGDVVLF QRPRGGGDRL YIGCRRQGAN ETPSPARTAT RLNEKAPWSR VHRTASGPHP VSPSGACSRQ APVQQDGLRH AGRRSLRPCD NTAVAPGGKA KRLRLFGVNL ECGPASDRRP LHSASWL // ID M0T7J3_MUSAM Unreviewed; 873 AA. AC M0T7J3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16450_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16450_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16450_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16450_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16450_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P16450_001; -. DR EnsemblPlants; GSMUA_Achr6T16450_001; GSMUA_Achr6P16450_001; GSMUA_Achr6G16450_001. DR Gramene; GSMUA_Achr6T16450_001; GSMUA_Achr6P16450_001; GSMUA_Achr6G16450_001. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 738 820 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 873 AA; 96730 MW; BF4C84A0779091B2 CRC64; MASSELSVKG SSGGQGQSLS SGCSEMHEGP SVKVGGDAEG SLGFSGGAVC GKDALYTELW LACAGPLVTI PRVGEKVFYF PQGHIEQVEA STNQGADQQM PVYNLPWKIL CRVMNVDLKA EPDTDEVFAQ VTLLPVSKLD ENTVEKEMLS TPPPRPHVYS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPSQE LVAKDLHRVE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA VNTGTMFTVY YKPRTSPSEF IVPFDQYVES IKSNHSVGMR FKMRFEGEEA PEQRFTGTIV GIGDADPSRW PGSKWKSLKV RWDEPSSIPR PERVSPWKIE PVLTPPLNPL PMPRTKKPRT TSFPCSPDSS VPKREDAAPK VTAEPSQSYG APRVLQGPEM MTLRSSYADS NESGATHKPV VWSMNDEEKN DVPTRRRLGS DSRMLIKRHE QTYNGIFSGY CPPDSSGFQT PFFEQTPGDK NILKPHFQVQ EAKHNYSPGS WSLIPPNSNF GMSDHDFKTT AQIGEVSYQK AGNCRYGTRG FFSELQSLGS IQNSPNWFTH LLPDSQIENM AQPRVVKPLP MLPSQTDVAK PKANSGYKLF GFHLNSNPVI SESVMPRSNS ADILMPHSHP EAALPYQQGL EVDKHSESSV TERLVGAAPT NGETEKLIHV SPRTAQDFQN KLQNGSTRSC TKVHKQGIAL GRSVDLTKFN GYDELIAELD HMFEFEGALV SPNKSWLVVY TDNEGDMMLV GDDPWKEFCN MVHKIYIYTR EEVHRMNPGT LSSRVEESPA TSDGRIAGKE PKGPVPAAIS ENSERCPSIG TAF // ID M0T830_MUSAM Unreviewed; 340 AA. AC M0T830; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18320_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18320_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18320_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18320_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18320_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18320_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr6T18320_001; GSMUA_Achr6P18320_001; GSMUA_Achr6G18320_001. DR Gramene; GSMUA_Achr6T18320_001; GSMUA_Achr6P18320_001; GSMUA_Achr6G18320_001. DR OrthoDB; EOG09360RN8; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR004827; bZIP. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00338; BRLZ; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50217; BZIP; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 273 336 BZIP (basic-leucine zipper). FT {ECO:0000259|PROSITE:PS50217}. FT COILED 270 339 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 340 AA; 38699 MW; E311E9150A07589D CRC64; MVISLGHLQH HQPSTAPAIS LPSSLSSLPD LSHYQTHMAQ HHPQAWSWID LHHHYQHLYQ AEEEESMVER ENMFEKPLTP SDVGKLNRLV IPKQHAENQS YVLTKGWSRF VKEKRLDAGD VVLFGRPRFG GDRLFIGCRH RWANESPPPA HAMAVATAAG PRRAVCHPDP CSCPTSTSCF SSVQEDCLLL RAGNPLGTLH HTVSYQATES NDKGFLKLSP FTGDQRDEAV QSEAVTPANS KRFRLFGVDF DYRPAPEPEP SIPISCFLQA EKEQRRLRRV IANRESARQT IRRRQALREE LTRKVADLSL ENEKMKMEKD IATREYLSLK ETNEQLKDQV // ID M0T8I3_MUSAM Unreviewed; 855 AA. AC M0T8I3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19850_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19850_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19850_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19850_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19850_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P19850_001; -. DR EnsemblPlants; GSMUA_Achr6T19850_001; GSMUA_Achr6P19850_001; GSMUA_Achr6G19850_001. DR Gramene; GSMUA_Achr6T19850_001; GSMUA_Achr6P19850_001; GSMUA_Achr6G19850_001. DR OMA; FNPHPHE; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 708 792 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 855 AA; 94911 MW; 5379382FECF8DF20 CRC64; MRLSSSNLTS EAHEEEKQCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE IDSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSSQEQKDP YLLTELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAEELIAR DLHGKEWKFR HIFRGQPKRH LLTTGWSIFV SAKRLVAGDS VLFIWNENNQ LLLGIRHANR PQTVMPSSVL SSDSMHIGLL AAAAHAASTN SRFTVFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPIG LPFFQGGKDD GIDLNSSLMW LRDGGIPGIQ SMNSSSIAVT PWMQPSLDAS MLGMQPDMYK TVVAGALQEM RTMNPIKQVS TAMLQFQQPN NTASRSNPIL PSQTQSSFIQ HHLQQGHSFS EQQEQPQVRQ SHYQQVPNVP STLSQLASSS QSQSTTLHMI SPSFQLKDFP DSNGNSVSAS TASPLNNILH QFSTEETSQH LSLPRYVQPI NSGTTHPNIS LQSVTLPPFP GRECSVNQSG NMDTQNQHLF SVSENSSLLV QNGIPSLSAA VSENDSMNMT YAASRFLSSS GNDFTINQAL SGSNGMDESG SGFLRYPENV DQVNPQSGTF VKVYRSGSFG RSLDISRFSS YHELRSELGH LFGLEGQLED PQRSGWQLVF VDRENDVLLV GDDPWQEFVN NVSCIKILSP QEVQQMGQQG VDFASLPPIE KLQIKAWIPL WYGSPPSDEC LVEGGGTLPL DLEVGRMWPP LIPAH // ID M0TB52_MUSAM Unreviewed; 697 AA. AC M0TB52; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29070_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29070_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29070_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29070_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29070_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P29070_001; -. DR EnsemblPlants; GSMUA_Achr6T29070_001; GSMUA_Achr6P29070_001; GSMUA_Achr6G29070_001. DR Gramene; GSMUA_Achr6T29070_001; GSMUA_Achr6P29070_001; GSMUA_Achr6G29070_001. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 570 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 697 AA; 78201 MW; E682FE8CB63F83CA CRC64; MLSYHYYKLF LTTGGNFLYL GSYGDVLYQE LWKACAGSLV TLPREKERVY YFPQGHMEQL EASTNQELDQ QMPLFDLPSK ILCRVVHVEL RAEPDTDEVY AQITLQPEVN VKPSYSLLCT QDEVTSPDSP LAEPERCNVR SFCKTLTASD TSTHGGFSVL RRHADECLPS LDMSQNPPWQ ELVAKDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKKL VAGDVFNFLR GENDELRVGV RRLMRQPNNM PSSVISSHSM HLGVLATASH AIATGTLFSV FYKPRTSRSD FIISVNKYLE AKNYKFSVGM RFNMRFEGDE APEKRFSGTI VGVDTTSQWA GSEWRTLKVQ WDEPSCIRRP DTVSPWELEP LLAAAPPTFQ PVQRNKRTRP SAAPAESSDL TPAFGLWKST AESTQNFSFS GLQGGKELCA PSCPTSVFPS ASKPESIEFN GNNGPSAING AMYWPFRTEP QTDSLMADIN KEQSEKKQET STGCWLFGIQ LVESSAVGEL SPLTTNSCVG EEQAVTSLDV ESDQQSQPSN INRSDALAVS SEPEKSCLRS TQECQSRQLR SCTKVHMQGM AVGRAVDLTR FYGYDELLQK LEEMFNIEGE LYGAAKKWEV IYTDDEDDIM MVGDDPWHEF CSMVRKIYIY TCEEAKRLTP RVKLPAVGKV IRPLPKKASC DADATENSSK DQALVAD // ID M0TD03_MUSAM Unreviewed; 242 AA. AC M0TD03; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P35600_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P35600_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P35600_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P35600_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P35600_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P35600_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P35600_001; -. DR EnsemblPlants; GSMUA_Achr6T35600_001; GSMUA_Achr6P35600_001; GSMUA_Achr6G35600_001. DR Gramene; GSMUA_Achr6T35600_001; GSMUA_Achr6P35600_001; GSMUA_Achr6G35600_001. DR OMA; ANSQAYR; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 150 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 150 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 242 AA; 27951 MW; F60FDBBD7282A538 CRC64; MSMNPLARHH PQAWTWEESP MINPRQYFHY TYRVGQEGVE HEREHMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLDGDSG EKGHLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSGFVK EKRLDAGDVV FFERLRHRGD RFYISCRRRS EDESPPAACT LTMANAAAPW IPMCYTARAS STTRLALRAD DEVDVVRSKA MGRPTHSKRL RLFGVNLDCV PELETQLVLA PETGQVHAHQ NL // ID M0TDD8_MUSAM Unreviewed; 858 AA. AC M0TDD8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr6P36980_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P36980_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P36980_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr6P36980_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr6P36980_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr6P36980_001; -. DR EnsemblPlants; GSMUA_Achr6T36980_001; GSMUA_Achr6P36980_001; GSMUA_Achr6G36980_001. DR Gramene; GSMUA_Achr6T36980_001; GSMUA_Achr6P36980_001; GSMUA_Achr6G36980_001. DR OMA; SINAPTI; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000012960; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 758 842 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 858 AA; 95344 MW; E7F04C495694DDC1 CRC64; MSSIQENVGP VGLNSAAVLQ DEMKLLGEAP SGRKVINSEL WHACAGSFVS LPQPGSLVYY FPQGHSEQVT ASTRKIANSQ IPAYTDLPSQ LMCQVHNVAL HADKETDEIY AQMTLQPVNS ESDVLHIPDL GYTKCKHPTE IFCKILTASD TSTHGGFSVP RRAAEKLFPQ LDYSMQPPNQ ELIVRDLHDN LWTFRHIYRG QPKRHLLTTG WSLFVGAKRL KAGDSILFIR KSLRRKDKLC SFPETNETCG MYRDEKSQLL LGIRRAFRKQ IAQPSSVLST DSMHIGVLAA AAHATSSRSP FTVYYNPRAC PSDFVIPLTK YHKAAYTQVP IGMRFGMMIE TEESSKRRYM GTIVGISDCD PVKWPNSKWR NLQVEWDEHG YGERPDRVSL WEIETPESLF AFPSITSSLK RQCLPGYVGP AINIQFGNLK PFPKPAKNGN PNSEHLIAGV GSENLLNILN KPTSHDGLLG CHQSIYSISP AEPEQKFQDH NTGNENGINL RRTENASLDE SSAQQSEMDS VVLPIDPNKQ SDDMIKTISH DILAENLDQL PNHQNQSDPT GAQSPGLEAT QSSDVCNLNN LLPCQDYLHH NLDHDEWIPQ HSYSLYLSAA ENAATFTSDI SSLAKPHSFE PIETYQLSCI SDSDTGQHCT TNIQEYLGTQ LNSLDDELLG MPNSCGTMDL SEESNTQSET IGNLHLDPSN ESMDMGLIPS VTIEGLNSES SLQDIPDCSA GTSSGSIAAN DYRLYRGSRK QVCQQPLRTY TKVQKLGSVG RSIDVTRFSN YHELRSAVAC MFGLEGQLDD ARGSEWKLVY VDYENDVLLV GDDPWEEFIN CVRCIRILSA SEVQQMSQEG MQVMEGLV // ID M0TDF2_MUSAM Unreviewed; 891 AA. AC M0TDF2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P00120_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr7P00120_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P00120_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P00120_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P00120_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P00120_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr7P00120_001; -. DR EnsemblPlants; GSMUA_Achr7T00120_001; GSMUA_Achr7P00120_001; GSMUA_Achr7G00120_001. DR Gramene; GSMUA_Achr7T00120_001; GSMUA_Achr7P00120_001; GSMUA_Achr7G00120_001. DR OMA; PAGMNQI; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000012960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 347 448 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 571 621 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 347 448 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 718 745 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 891 AA; 100077 MW; C23676AA7E69A3E7 CRC64; MSSPSSAAAT TAKICFNSQC KEPFPDTPPT RRKGWRLRSG EIAELCDRCS CMFEQGNFCE TFHSDDGGWR NCETCGKRVH CGCIVSAPTY VFVDAGGVDC VACARKSLVT IVQLPLWLEH IYNNMIILFL VWSAFFFSIN LSERKEFPAK SWKPLNGPFF GQWRQSPHMW NMTSAQSDLQ QRLSYEFDRP NCIEKLTPGG RHSILAHEKK FENLSERPIT SNVARERYVN ANLDAHLNSC VKPATSSAIK EDTSPLGLAA PFQSANDLKE PSRYSNQSQG QAGYPLSKQF YPQSMMDAEL QTHIRNGKSR VDNRARSQLL PRYWPRITDK ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPTISQPE GLPLKVQDAN GKDWVFQFRF WPNNNSRMYV LEGVTPCIQA MQLQAGDTVT FSRIDPEGKL IMGFRKASSV SNEQDSQTLK SGNGFSTPPE AEQWNCTKLA NEGLLQKDGL NARSSQGSRR KGGNLGSKSK RLRIENEDSM ELKVTWEEAQ QLLRPPPNCI PSVVLVEGHE FEEYEEAPVL GKPTYFTTNQ SGENYQWAQC EDCSKWRRLP VDALLPSRWT CSNNMSDPER SLCSAAQELS MEQLAELIPC KAGASKRSKV KVETDNIEVS DGLDTLANLA ILGEGENLPP SQPTTKHPRH RPGCTCIVCI QPPSGKGPKH KQTCTCNVCL TVKRRFRTLM LRREKRQSEK EAETARKQQK QQSNQSPEKA PGGSDPLKTD LGVNKTPRKA MTNDEGISDE GLERRRASQS PLKAPQIDLN IQPEREEEPS PKSDSGSMMR LLQDAATSFK SSCVQFVQLQ DGWACCSRIK ILLCWFKHHT QIMNFCSTLF VHCLEKEKKK DEVDKRPCKA V // ID M0TEQ3_MUSAM Unreviewed; 206 AA. AC M0TEQ3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P04630_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr7P04630_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P04630_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P04630_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P04630_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P04630_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr7T04630_001; GSMUA_Achr7P04630_001; GSMUA_Achr7G04630_001. DR Gramene; GSMUA_Achr7T04630_001; GSMUA_Achr7P04630_001; GSMUA_Achr7G04630_001. DR Proteomes; UP000012960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 98 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 206 AA; 22626 MW; 93BB65CEA3E2ADE7 CRC64; MEAFRVYDTS SSSPSVPPSE NGQAPAAPLL DREHMFDKVV TPSDVGKLNR LVIPKQYAES QSYVMTKGWS RFVREKQLAA GDTVSFLRSA GNAGQDRLFI DLQHRPPRPI TQFSLPGRPV GQWSGFIASS FYYRSACPRH VGVQADAGRS DMVSMPLVSG SVPVVFGTAK PKQLRLFGVN LEWPDAEGSS NSQSPPSLQP ARWWST // ID M0TGI8_MUSAM Unreviewed; 598 AA. AC M0TGI8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11000_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11000_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11000_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11000_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11000_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr7T11000_001; GSMUA_Achr7P11000_001; GSMUA_Achr7G11000_001. DR Gramene; GSMUA_Achr7T11000_001; GSMUA_Achr7P11000_001; GSMUA_Achr7G11000_001. DR OMA; VRLEDHH; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000012960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 1 28 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 598 AA; 66760 MW; 2642B4A5E04AE969 CRC64; MEIDLNIIEE EEEEEEEEER KVAAAACCGG RGSVCMELWH ACAGPQIWLP RKGSLVVYFP QGHLEQLGAA GCGGGLVAPR DVPPHVLCRV LDVKLRAEEE TDEVYAQLYL VAENKELEKQ LQDDEAGERR HVEESDDFSK AFTTHMFCKT LTASDTSSHG GFSIPRRAAE DCFPPLDYKQ PRPSQELAAK DLHGTEWRFR HIYRGQPRRH LLTTGWTAFI NKKKLVSGDS VLFLRYAYLT GNDGELRLGI RRSDQLTRVI HSPFNKKNLG ILTDLANAVS ARMVFCINYN PREGKSEFII PYWKFTKSFN HSFSIGTRFK MTIDCEYAAD RRCTGLITGT GELDPLRWPG SKWKCLLVRW DDEVDITSDN RVSPWDIEPT DSISLSYVPP TTGPKRTKKF HPWDHLDHPI PNGVAYPDLG ESARFLEVLQ GQELYPTVPA FQSTPMNALP ESGARLLSRL LGIGSSWPRS FQDSSFLGKS TPTFVPMFPQ ESAQFSHPGA VSTTDEHDKS SFGTEKQMPC VPCNMVDEFA KGHYSSADPK NDENALPHGI KSCRLFGFSL TETIPAANIS AGSVTDMHYE ESESPFGSRK PSSAAGAS // ID M0TJZ0_MUSAM Unreviewed; 733 AA. AC M0TJZ0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23040_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23040_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23040_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23040_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23040_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23040_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr7P23040_001; -. DR EnsemblPlants; GSMUA_Achr7T23040_001; GSMUA_Achr7P23040_001; GSMUA_Achr7G23040_001. DR Gramene; GSMUA_Achr7T23040_001; GSMUA_Achr7P23040_001; GSMUA_Achr7G23040_001. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000012960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 585 687 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 585 687 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 733 AA; 81683 MW; 8AD54319BE1EDD2C CRC64; MKIWKRERER EKESGRKGRF PFYDYCFLPP RRRQQLLLLS LQIYLRAHAR ALLLHLRRRL LSAVRFILVH VSSLQSTIME RKSKRKQREE LRVPKEVDKT MADHEVEEEE KMLAGFDAAG DHPGVDEIVL DMDGEDLIFA EDTFPSLPDF SCLSSPSPST LHAKNTVLSP CSSTSSTSSC WSFLQVPYGG RVADSSEFSS DGLDILGDID LLDLSIDPWE PCSLFHAGES STAVDNGSEA IVDRAMQPCQ VAEEASSEGH GEGVQQRQQL EDTSSDELAR VFLDWLRSNK DSISAEDLRS IKLKRATIEC ADRRLGRTKH GRMQLLKLIL TWVQNSHLQR KRHRPTSSDD HQPRPFPNNC NCSTADQNPA AWNPNSTDPA AGSTHPSLLA AYGIANGEMA YPGATAPYPY PHSCGTSSVV VNSQPFSPTL DFVDPNAGPW SSQLASALPS MVPPQYSGGY ANQFLGHPMY HQGQHLPGLA SATKEARKKR MARQRRLASL HHHRNHHNQS HLQHAHPHLG STEGAARNWA FWTNSSSSSH KRNHLAETQT PPPAAQPQRR SPHGAASTSE KRQGWKGEKN LKFLLQKVLK QSDVGSLGRI VLPKKEAETH LPELGARDGI SIPMEDIGTS QVWNMRYRFW PNNKSRMYLL ENTGDFVRSN GLQEGDFIVI YSDVKCGKYM IRGVKVRQPA EAAGAPSGMN AEKKAHRRRN GLEKTGGADK MRGNSIIHGD VSP // ID M0TKB9_MUSAM Unreviewed; 666 AA. AC M0TKB9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr7P24330_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P24330_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P24330_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P24330_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P24330_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_009410807.1; XM_009412532.2. DR STRING; 4641.GSMUA_Achr7P24330_001; -. DR EnsemblPlants; GSMUA_Achr7T24330_001; GSMUA_Achr7P24330_001; GSMUA_Achr7G24330_001. DR GeneID; 103992719; -. DR Gramene; GSMUA_Achr7T24330_001; GSMUA_Achr7P24330_001; GSMUA_Achr7G24330_001. DR KEGG; mus:103992719; -. DR KO; K14486; -. DR OMA; CHRDANE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000012960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 567 648 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 666 AA; 74408 MW; 5DBA0E615EA5560F CRC64; MLKKGDTLYE ELWRACAGPL VEIPRVDERV FYFPQGHLEQ LEVSTDQELN QQIPLFNLPP KILCRVVNVT LKAEPDTDEV YAQITLIPES DQNEPTSPDP CVLETPRPVV HSFCKILTAS DTSTHGGFSV LRRHATECLP PLDVSQQTPS QELVAEDLHS LEWRFKHIFR GQPRRHLLTT GWSTFVASKR LVAGDAFILM RGENDELRVG VRRLARCQNT LPTSVISSHS MHVGLLATAS HAISTHTLFM VYYKPRCNQF IVSLNKYLEA TKNEFAVGMR FKMKFEGEDV PEKSFTGTVI GIGDISSQWP GSKWRSLKVH WDEASSIQKP EKISPWDVEP FGQPISASGD PQAAFSKKRA RSPLDLPGTE PSSTFRHPVE DQMFDLRPPN SISARSSETR FLWSPRQTES INFNYLNIPR PCNRGLLDGW SKDSSSLPHV TPKRLEDAVG DAEATLPSWG LALTPITEEP SLDLECKIEN EKKPKSSGCY RLFGIDLVSP SAGISSTVLS GDHACISSAT TEDPVAATAL NEDLDEQSGV SKASKETKQV LQASPKEIQS KQNIAARSCT KVHMQGIAVG RAVDLANLEG YDELFIELEQ MFEIKGELRC RDKWEVVFTD DEGDMMLVGD YPWPEFCEVA RKILIYPSED VKRVEPENKL PATSST // ID M0TKL9_MUSAM Unreviewed; 727 AA. AC M0TKL9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr7P25330_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P25330_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P25330_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr7P25330_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr7P25330_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr7P25330_001; -. DR EnsemblPlants; GSMUA_Achr7T25330_001; GSMUA_Achr7P25330_001; GSMUA_Achr7G25330_001. DR Gramene; GSMUA_Achr7T25330_001; GSMUA_Achr7P25330_001; GSMUA_Achr7G25330_001. DR OMA; READPMW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000012960; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 727 AA; 79831 MW; 6C5ED12575D0DE42 CRC64; MCLLPNPAHH VASAVAAEEE ACRAASVCLE LWHACAGPRI WLPKKGSLVV YLPQGHLEHL RDGGGGRGRG GIGGYDVPPH VLCRVVDVKL HADAATDDVY AQLSLVAENE VRLLLVPDFS LKKGEVEQNA EEENDESISK SLIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSQELITK DLHGTEWRFR HIYRGQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGNDGM LRLGVRRAAQ FKNICPVSEH QSGNMNLAAF AVVANAVSDK NVFDIYYNPR VSSSEFIIPY RKFVKSLSNS ISVGMRFKLL YEGDDATDRR STGLITGISD MDPVRWPGSK WRCLLVNWDD VVNANQQTRL SPWEIKPTCS VLSSGSLSTT GCKRAKVTLP SVNMDFPIPN GNQCLDLRES ASFHKVLQGQ EFSRFRIPSS VGVLASHVSE VEKCQHSEGF SKSLGLHKVF QGQEVFSNHP PILGAHSDAD ARNGVYGLFD GLHTFHAVSR LSTASLGYGT IVQPSSPSIQ ASSPSSVLMF QEASSKTSMV QPVPCRNGQD GGDGGSCFAN LTGMEALHRK EATLPIWPPI MGFHFANQQH KMIEVHAPIL DNKLDTQNDQ NVSRNGCRLF GFSLTEKIPV ADSVGKPLPV SSTSTQVKLD AAFSTSVAQT PAKPVGCSCN GIKIWTLLPF NFFDLLMVCV MFCYLKCHIF QCHKTIPTNA KSALRMF // ID M0TLS7_MUSAM Unreviewed; 857 AA. AC M0TLS7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P01750_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P01750_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P01750_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P01750_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P01750_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P01750_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr8P01750_001; -. DR EnsemblPlants; GSMUA_Achr8T01750_001; GSMUA_Achr8P01750_001; GSMUA_Achr8G01750_001. DR Gramene; GSMUA_Achr8T01750_001; GSMUA_Achr8P01750_001; GSMUA_Achr8G01750_001. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 329 430 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 562 612 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 329 430 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 857 AA; 94709 MW; C834D87929E1F867 CRC64; MATVRCMNVA CGLTDPGGEW RRGWELRSGG FATLCVKCGM AYEQSAFCDI FHQKESGWRE CCSCGKRLHC GCIASKSFFH LLDTGGVQCT GCMKNLEVPS VRSYLSEVIQ SFLSQHHQRV NAPSPKSSKE NDADTAVTGR TCEMSATTSD SKIDVSKFVK GKGMQNADLE QSESEIRSYP GPVGSSQISL RDEKDFMTDK SICESLAQSC LSMSLVHSNQ GSNTETCNTA GKPFLALHMA CSIAEGKDER NTISALQQMQ RPQCILAKPL KTCTRSFSEA SKNGLPYMRV ARPPTEGRNQ LLPRYWPRIT DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPRISQ PEGVPLTIQD TKGKDWHFQF RFWPNNNSRM YVLEGVTPCI QSLQLQAGDT VTFSRIDPEG KLVMGYRKAT NTVPLQQDSQ ISAIANGTFG NETLFTGISE SVPAVSGYSG LLHWHKGGTS NEGMQLQALQ KRTRNIGAKS RRLLMNTDDA LELKLTWEDA QELLRPPPSA KPSIVTIEDY EVEEYDEPPI FGKKTIFTAR PSGEQDQWVQ CDDCYKWRRL PVDVLLLSKW SCADNTWDPK RSSCSAPDEL SQQEMQLLLR QYEDLIRQRT SACFKQDSSE IAASSLDALA AAAALGDVGN QTTTPYATTT KHPRHRPGCT CIVCIQPPSG KGPKHDPTCT CNVCMTVKRR FKTLMMRKRK RQSEREESEV HKKENEFSPV SSRTIMENVE VSQGQIDLNC HPMSHDSQAL NPRNSMMSLL QDAYRPLETY LKQNGLTSLA SQQSKQGSPS SLTVPQAPGE SEGKVPDESH FASASKEQEG GDDEGDVGTD MATSDAS // ID M0TMD3_MUSAM Unreviewed; 817 AA. AC M0TMD3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03800_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03800_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03800_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03800_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03800_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03800_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr8P03800_001; -. DR EnsemblPlants; GSMUA_Achr8T03800_001; GSMUA_Achr8P03800_001; GSMUA_Achr8G03800_001. DR Gramene; GSMUA_Achr8T03800_001; GSMUA_Achr8P03800_001; GSMUA_Achr8G03800_001. DR OMA; LACHEIG; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 352 453 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 577 627 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 352 453 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 817 AA; 90827 MW; 6FB85CFEA8C3A6FF CRC64; MSSPTSVSLS GGKICFNSHC KEVILDHTPP RKKGGWRLRS GEIAELCDRC SCAFEQGSFC ETFHSDVAGW RNCEACGKRV HCGCVASAPT YVFLDVGGVE CIACARKSLA MAPNQMLSSP MLMHQHVSER RDLPVKSGRP ITSPFSGQWR QAPHMWNMTS LQSDLQQRLS YEFDRPSNIE KLAPGGRHSI SAHEKKFEEL PERIMSGSHN NIARDRYAHG NTVIPDPCST SSGVKIEAKA NSSIKLQPLP ISKEDSSPLI GLAAPFSSTN GSREPMKFLS NQPPQLTTSP LPKQFYPEGI ADTELQIQMR NGRARVDARS RTQLLPRYWP RITDQELQQI SGDTNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPT ISQPEGLPLK VQDASGKDWV FQFRFWPNNN SRMYVLEGVT PCIQAMQLQA GDTVTFSRID PEGKLVMGFR KASSGSTEQD TQTHISGSDF STPPEADKSS WPKFTKAGFI QQDGPAARSL QVPSKRKAST LGSKSKRLRI ENEESMELKL TWEEAQELLR PPPNSSPGIV VIEGHEFEEY EEAPVLGKRT YFTTNPAGEN YQWAQCEDCL KWRKLPIDAL LPFKWTCTEN VSDPQRSSCS SAQELNLEQI AAMISCKTDA SKRAKVKVES NNIEVSDGLD TLANLAILGE GKNLPTSQPT TRHPRHRPGC TCIVCIQPPS GKGPKHKQTC TCNVCLTVKR RFRTLMLRRE KRQSEKESET ARKQQQKPML PSSEVLPQVK SDPSSTGPGD DNASQKEIAS NDTIKGNYTN KQVVILPSLS SYPETLSLVS FVFYYYW // ID M0TQ66_MUSAM Unreviewed; 299 AA. AC M0TQ66; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13630_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13630_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13630_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13630_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13630_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13630_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr8T13630_001; GSMUA_Achr8P13630_001; GSMUA_Achr8G13630_001. DR Gramene; GSMUA_Achr8T13630_001; GSMUA_Achr8P13630_001; GSMUA_Achr8G13630_001. DR OMA; HENTNQA; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 33559 MW; 174933BC2992CB15 CRC64; MKLSTVGIGQ QEPEEEEKRC LNSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAVSTNK EAEGHIPNYP SLPPQLFCQL HNVTMHADPE TDEVYAQMTL QPLRLQEQKD AYFLIEMGVV SKQPVNYFCK TLTASDTSTH GGFSVRRRAA EKVFPPLDFS QQPPAQELVA RDLHGVEWKF KHIYRGQPKR HLLTTGWSVF IGAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NGCFTVFYNP RQLPYSCTCN CLFLVHVQVF IDYSWLKFS // ID M0TQG8_MUSAM Unreviewed; 414 AA. AC M0TQG8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14650_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14650_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14650_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14650_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14650_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14650_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr8T14650_001; GSMUA_Achr8P14650_001; GSMUA_Achr8G14650_001. DR Gramene; GSMUA_Achr8T14650_001; GSMUA_Achr8P14650_001; GSMUA_Achr8G14650_001. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 94 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 135 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 94 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 135 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 414 AA; 45662 MW; A07A9858DC6C2918 CRC64; MISVATTMAA GREGSDSNSI VNWVSFAPCM ATTSNTSTRY KGVMLQQNGH WGAQIYAHGH RIWLGTFKSE QAAAAAYDSA AIKLHHGDSH RNLPATPLTA HEHKFQETFT TDEAAPRPSL PHAGTSGNVA FLEMFLKELT PSDVGKLNRL VIPKKHATKY FPQVASVTAD EVMVEFVDRE DRSWTFRYCY WKSSQSYVFT KGWNKFVKEK RLQAKDTVAF YRCEERDGLR RTYCLIDIIR CSGDGHRTSG FSWSKNGAVG LGLSCKRKPE EGDEEGNRTS GFSWSKNGTV GLGLGCKRKT EEGDEEGDRS SGYSGRSGNG AMGLGLGLKR KTVEGDEEGD RSSGFSGSRS GAMGLGLSFK RKTKEEDEVG EVVSGLAVTQ KSSEARQQEE EEQEKRKKRL RLFGVSITDT NDRG // ID M0TRG0_MUSAM Unreviewed; 208 AA. AC M0TRG0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18070_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18070_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18070_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18070_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18070_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18070_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr8P18070_001; -. DR EnsemblPlants; GSMUA_Achr8T18070_001; GSMUA_Achr8P18070_001; GSMUA_Achr8G18070_001. DR Gramene; GSMUA_Achr8T18070_001; GSMUA_Achr8P18070_001; GSMUA_Achr8G18070_001. DR OrthoDB; EOG09360NNM; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 208 AA; 23168 MW; DCD8201D41F99350 CRC64; MSLYQGSVLD LRVPALDPGQ AVGGLRFLLQ KELRNSDVSQ LGRIVLPKKE AEAHLPCLTS REGIMINMDD PDNLQAWTFK YRFWPNNRSR MYVLENTGDY VKKNCLQLGD FILIYKDDSK DRYVIRAKKT GSAELCVAPA DEGIFDSIVP DIVVGSARYS DLFLPLAEGI NIAYGYGLSC AFDEDFPMTF LDESTGSASI ASHKSSDH // ID M0TRH9_MUSAM Unreviewed; 1029 AA. AC M0TRH9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18260_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18260_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18260_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18260_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18260_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18260_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr8P18260_001; -. DR EnsemblPlants; GSMUA_Achr8T18260_001; GSMUA_Achr8P18260_001; GSMUA_Achr8G18260_001. DR Gramene; GSMUA_Achr8T18260_001; GSMUA_Achr8P18260_001; GSMUA_Achr8G18260_001. DR OMA; FLEFCEA; -. DR OrthoDB; EOG09360JIF; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR018501; DDT_dom. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR018866; Znf-4CXXC_R1. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF10497; zf-4CXXC_R1; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00571; DDT; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS50827; DDT; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 106 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 156 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 705 770 DDT. {ECO:0000259|PROSITE:PS50827}. FT DNA_BIND 67 106 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 156 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 844 871 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1029 AA; 114826 MW; D919394954C86BBF CRC64; MLALYRRSKF NSSCVEEASS IDSEKRLQAP LHAAVALQRL GSGVSLVIDP APEGGIEAES RKLASYRYKG VVPQPNGRWG AQIYERHQRV WLGTFGDEAD AARAYDTHSK AEIVDMLRKH TYRDELQQSK RSYEAGGFAG KRTTPGYLRS SRVILFDKSV TPSDVSKLNR LVIPKQHAEK HFPLKSSSGM ACKGVLLNVE DAGGKVWRFR YSYWSSSQSY VLTKGWSRFV KEKNLKARDV VSFWRSTGPE KQLYIDWRTE AVASNRTMTP AIRPLPVVKL FGVNISELPS PPSNTPFSPP SPPLTISDPM AVPRNAAAAD RRAAEESKTT AEASSSSATS PRKRTKSPGV RVIGGRIYDS ENGKTCHQCR QKTMDFAASC KQLRGDKPCP IKFCHKCLLN RYGENAEEAA VLENWSCPKC RGVCNCSFCM KKKGQQPTGI LIHAAKATGF SSVHELLDNK GSDVLSAANG LRSLSACVPP TCTKVTPKRS RDKEKDHDEQ KDVRCSSIDD EKDEVPAQKQ KKRRLKKLRS LNESDGGNVI ELCNGNARLK NAKARTKGAK KVSAISSKIG MQLNNDEHVP NNCGDNEHED LQHVVMLFKQ LHDDMNNCIN KDEIKVSDKG KKNNVHNKTL CKGQRFQKHG IKNSNSDEAE VLVDMPNKNV KAKLPPKKHK SRKPGAKVPF EHDNISIVVP QGLPLIKVSG YDWAAEDVGA ALQFLEFCNA FSEVLDIKKG EPECVLRELA RGRVGRRGVY SSILQFHIKL LSFIQKDLGD GSISYSTSGE KWLQSLVDCL NESDCALEIP SKCLNKGPLT HNSLDLSEKL RLLNLLCDRT LGTEEVRNWI DEENKKYIER NKELKETIIA AKRKGKDLKK KLKDDVAKAM LFLREGPPLS VAEHENLVSQ ISAETEKAHA EMLEIMELLP KNSDNMRCDA VRTQPVFLEG KGYVYWKLAG CCNNPKIILQ DIGSWDSVIL EDKWFAYDEK EEKAVDRHIS SVRNLSRRIH GRFVKQESHF GHGVGCDSGE ELTSSNCSA // ID M0TRP6_MUSAM Unreviewed; 573 AA. AC M0TRP6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18930_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18930_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18930_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18930_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P18930_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr8P18930_001; -. DR EnsemblPlants; GSMUA_Achr8T18930_001; GSMUA_Achr8P18930_001; GSMUA_Achr8G18930_001. DR Gramene; GSMUA_Achr8T18930_001; GSMUA_Achr8P18930_001; GSMUA_Achr8G18930_001. DR OMA; NDHEYRE; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 491 571 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 93 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 573 AA; 63231 MW; C9D3B8C3252B7E6F CRC64; MKEPPMKDND KCLDSQLWHA CAGGMVQMPA VNSKVYYFPQ GHAEHAQADK ETDEVFAKIQ MVPISNSESD YGEGDGLGLS MNEFDAQEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSTDPPV QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT GWSIFVNQKK LVAGDSIVFL RAENGDLCIG IRRAKRGTGG NFASSGGMRG RGRVRADAVV GTASLAASGQ PFEVVYYPRA GTPEFCVKAV AVRAAMRIQW CPGMRFKMAF ETEDSSRISW FMGTISSVQV SDPVRWPISP WRLLQVTWDE PDFLQNVKCV NPWLVELVSH MPAINLAHFS PPRKKPRIPQ HPDLPFEGQF NTPMVARIPL RSGGSPFCCY SDSAPAGIQG ARHANFGLRN LHLNKLQMGL FHAGLHRVDQ ATPNSRISMG VIVGNPTPPQ LVLFGQPILT EQQVSLSKSE NGVSLGVTGK SSTGGDLKKT TYASGELGLE SGHCKVFMES DDVGRTLDLS VFGSYEELYV RLSDMFGIEK LKMMNHVFYK DVAGAVKHTR DEPFSDFMKT ARRLMILTDS GSR // ID M0TT38_MUSAM Unreviewed; 1067 AA. AC M0TT38; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr8P23850_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P23850_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P23850_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr8P23850_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr8P23850_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr8P23850_001; -. DR EnsemblPlants; GSMUA_Achr8T23850_001; GSMUA_Achr8P23850_001; GSMUA_Achr8G23850_001. DR Gramene; GSMUA_Achr8T23850_001; GSMUA_Achr8P23850_001; GSMUA_Achr8G23850_001. DR OMA; AVYSHQI; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000012960; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 171 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 934 1018 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 171 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 570 600 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1067 AA; 118810 MW; 92C2362312F8BDFE CRC64; MKAAANGAAV PNPCEGESIF QLALAVLSAA GGGLWMTRVA VTGDRNTINP ELWHACAGPL VTLPPVGSLV VYFPQGHSEQ YLLKSNPVAA SMQKDIDAHV PNYPNLPSKL ICLLHNVTLH ADLETDEVYA QMTLQPANSQ IQWLLPRTLK PISHCSSELA LKQTRPQTEF FCKTLTASDT STHGGFSVPR RAAEKNFPPL DFSMQPPSQE LQARDLHDNL WTFRHIYRGQ PKRHLLTTGW SLFVGGKRLF AGDSVLFIRD KKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANHSPFTVF YNPRASPSEF VVPFAKYQKA VYSNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWCNLQ VGWDESAAGE RRNRVSIWDI EPVVAPFFIC PPPFFRKRPI PPGVPDDESS EMEIFFKRAM PWLGEEICIK DSQTQSTIMP GLSLVQWMNL QQNPSLANQT LLAETLQSLN GAVMQNLGTT DLCRQYDLTV QTKHQFVNQA LPNQRHNNVV QPQVLVQTQV QPQQQPVLQN NQLSQSSLPQ DQQHPQQLLL QQLRQQLQQQ QHQQQHHQQL QQQYEQQQSR TPVMPQQQQQ QSFSQSRMQQ PQHSQIQEYQ KAAIDVPQQL SNSHAQVQQP AILQQCAKAI SQVARPQTFQ NQPQQNPPQQ QLLHGELHRA FLPASPATNL IRASGSLLGA GRAQSGVTDD IPSCSTSPSA NNVVILPDSI LNRTQHCNIS TEKMSQSLLI PISKVQNQAV VAPQTYISNA VQMDCLDTTS SATSVCLSQT DGPLRQSLPL SSSNQPSMLR DPLPDIDVQG TDPRNSLLFG VNIDDSLGIP LATDSLLINN VDSGKYQNHI AGNVVANYNT SKDIQQELSS TMVSQSFGVP DMAFNSINST TNENGFLNKN SWVPTPPLPL QRMRTYTKVY KRGAVGRSID VTHYSGYDEL KHDLARMFSI EGQLEDRQRI GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ QMSLDVDLGN NNLPNQACNS SDGGNPLRGH GDQNSGNPSA GSYDRFE // ID M0TWW7_MUSAM Unreviewed; 193 AA. AC M0TWW7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02600_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02600_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02600_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02600_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02600_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02600_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr9T02600_001; GSMUA_Achr9P02600_001; GSMUA_Achr9G02600_001. DR Gramene; GSMUA_Achr9T02600_001; GSMUA_Achr9P02600_001; GSMUA_Achr9G02600_001. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 22691 MW; 62806D488A5AE358 CRC64; MAQHHPQPWY SWEPHMSLHH HHYQHLYRAE QEEARYEREH MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL GGDSGDKGLL LSFEDESGKT WQFRYSYWTS SQSYVLTKGW SRFVKEKRLD AGDVVLFERP RLGGDLKMTR DSKLSQPAGD QRNEAIQSET EAPTTSKRLR LFGVDLDYQP EPRPDPMTSI SWF // ID M0TYJ0_MUSAM Unreviewed; 487 AA. AC M0TYJ0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08310_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08310_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08310_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08310_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08310_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr9T08310_001; GSMUA_Achr9P08310_001; GSMUA_Achr9G08310_001. DR Gramene; GSMUA_Achr9T08310_001; GSMUA_Achr9P08310_001; GSMUA_Achr9G08310_001. DR OMA; MWKSPVE; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 487 Auxin response factor. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004006620. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 487 AA; 54602 MW; 61D525F4833628D3 CRC64; MLILLFLTVG GKFLYLGPSQ DVLYPELWKA CAGPLVTLPR EGERVYYFPQ GHMEQLEAST DQELDQQMPL FDLPSKILCR VVYAEPDTDE VYAHITLHPE INQGEVTSPD PPLPEPKTCN VRSFCKTLTA SDTSTHGGFS VLRKHADECL PPLDMTQNPP SQELVAKDLH ENEWRFRHIF RGQPRRHLLT TGWSVFVSSK RLVAGDAFIF LRGENDELRV GVRRLMRQLN SMPSSVISSH SMHLGVLATA SHALATGTLF SVFYKPRTSR SEFIISVNKY LEAKNNKFSV GMRFKMRFEG DEAPEQRFSG TIIGVDTASS RWKDSEWRSL KVQWDEPSSI PRPDRVSPWE LEPLLTGTPN SQPVQRNKRT RPSASPTITS DITPAFGLWK SPAESTRTFS VSGLQRGTKL HTSSCPTSRF LSASKPGLIE FNASNKSSAA NIPMCRPITS EHQTDSFGAD KEHSERKQET STGCWLFGIQ LVESSAM // ID M0TYQ7_MUSAM Unreviewed; 162 AA. AC M0TYQ7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08980_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08980_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08980_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08980_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08980_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08980_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr9T08980_001; GSMUA_Achr9P08980_001; GSMUA_Achr9G08980_001. DR Gramene; GSMUA_Achr9T08980_001; GSMUA_Achr9P08980_001; GSMUA_Achr9G08980_001. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 114 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 162 AA; 18316 MW; 44E6BC7A62672F8D CRC64; MSMNPITQHH PQFCSWAPPL GNPHLYRHHT YRVSQEGDQY EREHMFEKSL TPSDVGKLNR LVIPKHYAEN QSYVLTKGWS RFVKEKGLDA GDLVSFGRLR GGVDRLCISC RRRGENERPP AACTATTGDA AVPWSPTCYT ARAHAPTSHT GRICCIRSYN SM // ID M0U067_MUSAM Unreviewed; 910 AA. AC M0U067; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P14090_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P14090_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P14090_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P14090_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P14090_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr9P14090_001; -. DR EnsemblPlants; GSMUA_Achr9T14090_001; GSMUA_Achr9P14090_001; GSMUA_Achr9G14090_001. DR Gramene; GSMUA_Achr9T14090_001; GSMUA_Achr9P14090_001; GSMUA_Achr9G14090_001. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 777 861 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 467 494 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 910 AA; 101291 MW; C67EF395C3D20ED3 CRC64; MKADASGAAA PSPCEGERKT INPELWYACA GPLVTVPPVG SLVVYFPQGH SEQMVEPNFV AASMQKDINA HIPNYPNLPS KLICLLHNVT LHADPETDEV YAQMTLQPVN SYDKEALQAS ELALKQTRPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFSMQPP AQELQARDLH DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDKKQQLLL GIRRANRQPT NLSSSVLSTD SMHIGILAAA AHAAANHSPF TVFYNPRASP SEFVIPFAKY QKAVYSNQVS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVVAPF FICPPPFFGK RPRQPGMQDD ESSEMENLFK RAMPWLGEEI CIKDSQTQST IMPGLSLVQW MNMQQNPSLG NQTLQTEYLR SLAVGAFSRP PQQVQDLAMQ QKQQLQQQQQ HQQLQQQYQQ AQSRMPVKLP VQVNQQLSDQ QIQLQLLQKL QQEQQQQALF SQPRLCNSNS LVQQPLIPQQ CAKTTSQAVR LPQILQNQSQ QKPQQQQIPS SDFPEAVLST TPVTNLIPAS GSSLLAAGGT QSGVTDDIPS CSTSPSANNG SILPHSILNR NGHHNLISTE KTSQSVITML NPSSFEAATT YLSNTAQMDY LDTTSSATSP SMLRYAPPES DIPGTDPRNN VLFGVNIDGS MGIPLTADAL LVNNIDSGKF QNHIPGDAVA NYSTSKDAQQ ELNSWAPAPP PTIQRMRTYT KVYKRGAVGR SMDITRYSGY DELKHDLARM FSIEGQLEDR QRIGWKLVYV DHENDVLLVG DDPWEEFVSC VRCIKILSPQ EVQQMSLDVD LGNNSLPNQA CSSSDGGNAW RGQCDQNSGN PSAGSYDHFE // ID M0U1C4_MUSAM Unreviewed; 854 AA. AC M0U1C4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18170_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18170_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18170_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18170_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18170_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr9T18170_001; GSMUA_Achr9P18170_001; GSMUA_Achr9G18170_001. DR Gramene; GSMUA_Achr9T18170_001; GSMUA_Achr9P18170_001; GSMUA_Achr9G18170_001. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 727 811 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 95779 MW; 05AD6039BEB2EC37 CRC64; MIVCATVCEA GEKKRIDSEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA ATMQKEIDGI PNYPSLPSKL ICVLLDVTMH ADAETDEVYA QMTLQPVNKY DREAMLASEI GLKQNKQPAE FFCKTLTASD TSTHGGFSVP RRAAEKIFPA LDFTMQPPAQ ELVAKDLHDV SWTFRHIYRG QPKRHLLTTG WSVFVSTKRL SAGDSVLFIR DEKSQLLLGI RRANRQQHAL SSSVLSSDSM HIGILAAAAH AATNNSPFTI FYNPRASRSE FVIPLAKYNK AIYTQVSLGM RFRMMFETED SGVRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTATE RRTRVSIWEI EPVVTPFYMC PPPYLRPNFA TSPGVPGRQV INQGHVIISP IPHVSYRGQE LFSLFYLLNH IFCKRKSFLN DTFYIEHFVN FNFLERSIDN TSIYWKNSQT TQDGVVTEDP TKMLSFQTPA ASGPSFNSKS SPQAQLNQTL QLPHQLQQQP HLLTQSSVSM QHQLQSSPLQ QKSINLQQQQ FQQPGQLQHQ SPLPQILPLS PPLQSQLSQQ LTQQNQHFQD FQQQLDGSNL LPLQSDQLHQ AHKSSALDSQ KSPLLLRTQS SLSGTNVPCS SNFPSTNSNI DSLSLHNHRD NFLLGTMPDT LLSRGLGTRK DIQNLVSGYG QQKDIDTELS TADISSQSFG VPDMSFKPGC STDVVVTEGV LNRGVWANQP PPPPRMRTYT KVQKRGSVGR CIDVTRYKGY DDLRRDLARM FGIEGQLEDT YRTDWKLVYV DHENDILLVG DDPWEEFVSC VQSIKILSAA EVQQMSLDGN LTSLSVRTEA CSGSNSGNPW RGQFDDASFA SFHH // ID M0U1I5_MUSAM Unreviewed; 286 AA. AC M0U1I5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18780_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18780_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18780_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18780_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18780_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18780_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr9P18780_001; -. DR EnsemblPlants; GSMUA_Achr9T18780_001; GSMUA_Achr9P18780_001; GSMUA_Achr9G18780_001. DR Gramene; GSMUA_Achr9T18780_001; GSMUA_Achr9P18780_001; GSMUA_Achr9G18780_001. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 96 126 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 286 AA; 31194 MW; AF206A8D8D609CFF CRC64; MEFTSGRRDG LYIIGEEKQK DAFTYPSIFA LSSSSSSPST STAFRWHVRP CDGGAAGDGR RESDFFTEKE HMFDKVVTPS DVGKLNRLVI PKQHAESQSY VMTKGWSRFV KEKRLDAGDI VSFGRGVGES TRDQHYIDWK PRPVNGDIPM LPLNPLTGVS LARPLGPWGG HTGGGQLLFF RSSMARPPQI AAQRDSGSGP PMVLSSPPLV RNQAEAKRVR LFGVNLDCPE SKGDEHLVPS ARSPSAAQLQ PASTLPFHPL PHGSMEFSEA SSSTNKDLHL PLDLGL // ID M0U2A6_MUSAM Unreviewed; 310 AA. AC M0U2A6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21470_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21470_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21470_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21470_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21470_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21470_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_Achr9T21470_001; GSMUA_Achr9P21470_001; GSMUA_Achr9G21470_001. DR Gramene; GSMUA_Achr9T21470_001; GSMUA_Achr9P21470_001; GSMUA_Achr9G21470_001. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 194 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 194 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 35291 MW; D9266E172040EA96 CRC64; MRSPISYITP PFELVIEPLP NLFFRTFVHI FATSVQTDLF TRRDMETSSI GDAWGESGKR DESRKLPSSR YKGAVPQPNG RWGAQIYEKH QRVWLGTFNT EAEAARAYDV AVRRFRGRDG VTNFKPLNES DDDDAAELSF IGSRSKVEIV DMLRRHSYHH ELQQSRRSFG ADKMKTAPSR GAAAGGGPSN GMLLNFEDAC GRVWRFRYSY WNSSQSYVLT KGWSRFVKEK GLEAGDVVSF QRSTGPEKQL FIDSKARAGR GHTAVPMPRP PVQHFRLFGV NIARNPATHR DDMEFISSQD MFKRQRTEAL // ID M0U4K5_MUSAM Unreviewed; 448 AA. AC M0U4K5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29480_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29480_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29480_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29480_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29480_001}; RG EnsemblPlants; RL Submitted (JUN-2013) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_Achr9P29480_001; -. DR EnsemblPlants; GSMUA_Achr9T29480_001; GSMUA_Achr9P29480_001; GSMUA_Achr9G29480_001. DR Gramene; GSMUA_Achr9T29480_001; GSMUA_Achr9P29480_001; GSMUA_Achr9G29480_001. DR OMA; HRENRAG; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000012960; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 448 AA; 49209 MW; BAF197FFE9C2398B CRC64; MATEEEAAAP AREMPTVEPQ VWKACAGTAA RIPAVGSRVY YFPQGHAEQA GSRPDFSTLP SLFNAVLCRI SAVRLHASGG GFVSFAKILT PSDANNGGGF SVPRFCADSI FPRLDFNAYP PAQFILVYDV HGNHWKFRHI YRGTPRRHLL TTGWSKFVNS KKLIAGDSVV FMRNSSGQIL VGIRRTSRFC GPGFSSNARG RVPATSVVAA VRLAGMDLPF KVLYYARAGS SDFVVAAESV EVAMSVRWTT GMRVRMSVET EDSARMTWYE GRVSSVRMNS VDLWPRSPWR MLEVTWDEPE ILQNVGNVSP WQVVLVSASP QIESQFSVIK RIKMLESSEF CGDREGDMLF PVTELKSTIV GSLPSSVFSY SVFPAGMQGA RHYSIGTPNL CDSIMNTNRR VLNDLQGVNA LRKDDVFVEL KIGGTSQSGG SSPPSQAVWS SNPYRPTH // ID M0U6V7_MUSAM Unreviewed; 511 AA. AC M0U6V7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06460_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06460_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06460_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06460_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06460_001}; RG EnsemblPlants; RL Submitted (JAN-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_AchrUn_randomT06460_001; GSMUA_AchrUn_randomP06460_001; GSMUA_AchrUn_randomG06460_001. DR Gramene; GSMUA_AchrUn_randomT06460_001; GSMUA_AchrUn_randomP06460_001; GSMUA_AchrUn_randomG06460_001. DR OMA; TNTRFTI; -. DR Proteomes; UP000012960; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 210 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 210 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 511 AA; 58221 MW; 66BBB8234E9281E7 CRC64; MGKCACVRQR TTSFLFCCQK FIHYPLSPLP FRGLRDSWEA RYGDLQEREL PRARISFWDQ ESCVLCRRIL AAKAASFCSS SYYEAFYCWY QPASTRRGGE EMLGFGALAR LAGPLVSLPT AGTRVVYFPQ GHSEQAAAST NKEVESHFPN YPSLLPQLLC RLHNVTLRAD VETDEVYAQM TLQPLSPEEQ KVTYFPIEMG FTSKQPTNYF CKILTASDTS THGGFSIPRR AAEKVFPPLD FSQQPPVQEL IARDLYDVEW KFRHIFRGQP KRHFLTTGWS VFVRAKRLVA GDSVLFIWNE KNQLLLGIRR TNQPQTSASS SLVLSSDSMH IGLFAAAAHA AATNSRFTIF YNPRASPSEF VIPLSKYTKA VFHTCVSIGM RFRMLFETEE SSIRRYMGTI TGISVLDPVR WPTSHWKTVQ VGWDEATEGK RQCRARVSLW EVEPLTTFPM YPSLFPIGRS WHPGASFPFN SCLLYFIYLC ISDIKENELN ALMWSRGLAA ERGMMYDIGI F // ID M0U6Z9_MUSAM Unreviewed; 374 AA. AC M0U6Z9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06880_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06880_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06880_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06880_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06880_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06880_001}; RG EnsemblPlants; RL Submitted (JAN-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_AchrUn_randomP06880_001; -. DR EnsemblPlants; GSMUA_AchrUn_randomT06880_001; GSMUA_AchrUn_randomP06880_001; GSMUA_AchrUn_randomG06880_001. DR Gramene; GSMUA_AchrUn_randomT06880_001; GSMUA_AchrUn_randomP06880_001; GSMUA_AchrUn_randomG06880_001. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000012960; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 145 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 145 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 374 AA; 42105 MW; A98BE652BC7EC7E3 CRC64; METSSLEDGC SEAEKQSPPQ WPQPPPAPVG LQRLGSGTSV VLDLEVGVEA ESRKLPSSRY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARAYDIV DMIRKHTYQD ELHQSSRSAR ADRRHNPPHG ATEEWRSGPH REHLFDKAVT PSDVGKLNRL VIPKQHAEKH FPLQQAGAAA FKGVLLSFED ACGKLWRFRY SYWSSSQSYV LTKGWSRFVK EKGLRAGDVI TIQRSTAPEK LLFIDRKTRA LGRHAAAGVQ APRLPVQVVR LFGVDIVKIP VAVASDVTEG NGVDWNGKRM RDMERLMDHL FPNLSIFHVH VRVLIIVEIW REVECFSKTI GTLAAKGNIS VASLIVRLTF LSKTSLYQSY MLLP // ID M0U889_MUSAM Unreviewed; 635 AA. AC M0U889; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP11300_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP11300_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP11300_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP11300_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP11300_001}; RG EnsemblPlants; RL Submitted (JAN-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_AchrUn_randomP11300_001; -. DR EnsemblPlants; GSMUA_AchrUn_randomT11300_001; GSMUA_AchrUn_randomP11300_001; GSMUA_AchrUn_randomG11300_001. DR Gramene; GSMUA_AchrUn_randomT11300_001; GSMUA_AchrUn_randomP11300_001; GSMUA_AchrUn_randomG11300_001. DR OMA; EDISSHW; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000012960; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 531 623 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 635 AA; 71012 MW; B0FF786E82A77CB4 CRC64; MAAGSASRAT ERLKEGDGLY EELWRACAGP LVEVPRVDER VFYFPQGHLE QLETWTDQEL NQHIPLFNLP PKILCRVVNI NLKAEPETDE AYAQITLIPE SDQNEPTCPV PCVVEPPRPA VHSFCKILTA SDTSTHGGFS VLRRHATECL PPLDMSQQTP AQELVAKDLH GQEWRFKHIF RGQPRRHLLT TGWSTFVASK KLAAGDALIL MRGENDELRV GVRRLVHRQN TMPSSVISSH SMHVGVLATA SHAISTHSLF TVYYKPRTSQ FIVGVNKYLE TIKNEFTVGM RFKMRFEGED VPEKRFTGTI TGIGDISSQW PCSKWRSLKV QWDEASSILR PEKISPWDVE PFGGSMSTSS DAQAGFIKNK RAWSPLDLLG HEPSSTIWNP AKAQISDLGS MSSIIAQSLE KRFLWFSGQT ESIDNNSLHS PSSCNRRLSD HWLRDSKSPL ESTSSSLINV SLKLSKGTKK PKSGSGYRLF GIDLVCPSND ISSTMKLSVE VVSQSNATIE DPQVLQVSPK EIQRKQNSST RSCIKVHMQG IGVGRAVDLA NFEGYDELML ELEQMFEIKG ELRCHKKWEV AFNDDDGVMI LVGDYPWPVF CKLARKIFIY ASEEVKKMEP KSKLPAVPST DGEAA // ID M0U986_MUSAM Unreviewed; 884 AA. AC M0U986; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP14770_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP14770_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP14770_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP14770_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP14770_001}; RG EnsemblPlants; RL Submitted (JAN-2017) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_AchrUn_randomP14770_001; -. DR EnsemblPlants; GSMUA_AchrUn_randomT14770_001; GSMUA_AchrUn_randomP14770_001; GSMUA_AchrUn_randomG14770_001. DR Gramene; GSMUA_AchrUn_randomT14770_001; GSMUA_AchrUn_randomP14770_001; GSMUA_AchrUn_randomG14770_001. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000012960; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 731 813 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 884 AA; 99061 MW; 1ABBB2957F9278DE CRC64; MASSEVSVKG SRGRGEGLSS GCSEPREAAP MRDDDEERSL GLSGGAAVRK DSEDALYTEL WHACAGPLVT IPRMGEKVFY FPQGHVEQVE ASTNQVADQQ MPVYNLPWKI LCRVMNVDLK AEPDTDEVYA QITLLPDPKQ DENTVEKETL APPPPRPHVY SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSQQPPSQ ELVAKDLHGV EWHFRHIFRG QPRRHLLQSG WSVFVSSKRL VARDAFIFLR GENSELRVGV RRALRQQTNV PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRMCPTE FIVPFDHVDS IKSNHSIGMR FKMRFEGEET PEQRFTGTIV GIGDADPSRW TGSKWRCLKV RWDEASLIPR PERVSPWKIE PVLTPPPNPG PMPRPKRPRT SNVPSSPDSS VLTKEAASKA GPCQSHEVSR VLQGQDMMAF RSTFADSNES DTTQKPLMWS VCDEKINDVS ALRRSVSERW MHTKMHEQTY TDILSGFQPG DSSGFHSPGD KNLLKSHFQD QGAKHNCSPG SRSLMPPNSN FSIGECNLKM TRVVELSYQK LGSYRYDMQG VHTELQELGG DRHSENWLPR FLQDSRTENM PQTRVVKPQP LAPSQNDVVK SKGNSGCKLF GFHLNSKPVT SVSTTLTNGD TEKPNQVCQQ APKDVQNKLQ GGSTRSCTKA SFLFLLNQFE TYSFYVLFVS DIKCRFSCQY KIRSINADNI DRPKEVHKQG IALGRSVDLS KFSGYDELIA ELDQIFDFKG ALLAPNKNWL VVYTDNEGDM MLVGDDPWNE FCNMVRKIYI YTREEVQSMN PGTLNSRLEE SPATSEENSS GKKTNSPVHG TNRENSEGCA ELSRSLEDVK PKKLDVAFCD GSNI // ID M0UAB1_MUSAM Unreviewed; 678 AA. AC M0UAB1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18520_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18520_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18520_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18520_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18520_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18520_001}; RG EnsemblPlants; RL Submitted (JAN-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4641.GSMUA_AchrUn_randomP18520_001; -. DR EnsemblPlants; GSMUA_AchrUn_randomT18520_001; GSMUA_AchrUn_randomP18520_001; GSMUA_AchrUn_randomG18520_001. DR Gramene; GSMUA_AchrUn_randomT18520_001; GSMUA_AchrUn_randomP18520_001; GSMUA_AchrUn_randomG18520_001. DR OMA; EIWLDDH; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000012960; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 514 616 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 514 616 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 75037 MW; 795D742BA1951B89 CRC64; MPSSCYIHSG WKWFLINPCE IGLENKISQT VECESRRKQG DVVFASDEVE EAMADHKVEG EEKVLGVGCG GDTAAGVDDI VLNIDGEDLI FSEDTFPCLP DFPCLSSPSA TPSPSSASTL HAKNAVLSSC SSASSSSSSS SSSSSWSFLQ SSEFADGLDI LGDIDLFDLS IDPWDPPSLF HADEAKEGRL HGHGEGVPQQ AQEEESSEEL ARIFLEWLRS NKDSISPEDL RSIKLKRATI ECAARRLGRT KQGRTQLLKL ILTWVQNNHL QRKRHRLPYS YDHQPRPFPI SPNPNQLDYN CNPWSPYSMD PSTAATHPAL LSAYAGGGNG EMGYPSATAN PYPYHHSSST LPQFAPYPGT SASHPLSMAP PQYSGGMTNQ FLGHPMYHQG QRLPGTTSAT KEARKKRMAR QRRFSSLHQH RNHNQPLHLQ HAHHPVGSTE GANGSSHSNT RNWGFWTSMS SSSHQMNHMA EAQNASNMQQ TPPPPAAQLP QRPQLTTAST SEKRQGEKNL KFLLQKVLKQ SDVGSLGRIV LPKKEAETHL PELDARDGIS IPMEDIGTSQ VWNMRYRFWP NNKSRMYLLE NTGDFVRSNG LQEGDFIVIY SDVKCGKYMI RGVKVRQPVE ARAPSSRNTG KAHQRRNGLE KMAGASKMKG RSLIHDDADK YDDDDDDDDD DVPPSMHG // ID M0UAE8_MUSAM Unreviewed; 293 AA. AC M0UAE8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18890_001}; OS Musa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa. OX NCBI_TaxID=214687 {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18890_001, ECO:0000313|Proteomes:UP000012960}; RN [1] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18890_001, ECO:0000313|Proteomes:UP000012960} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Doubled-haploid Pahang [DH-Pahang] RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18890_001, RC ECO:0000313|Proteomes:UP000012960}; RX PubMed=22801500; DOI=10.1038/nature11241; RA D Hont A., Denoeud F., Aury J.M., Baurens F.C., Carreel F., RA Garsmeur O., Noel B., Bocs S., Droc G., Rouard M., Da Silva C., RA Jabbari K., Cardi C., Poulain J., Souquet M., Labadie K., Jourda C., RA Lengelle J., Roudier-Goud M., Alberti A., Bernard M., Correa M., RA Ayyampalayam S., Mckain M.R., Leebens-Mack J., Burgess D., RA Freeling M., Mbeguie-A-Mbeguie D., Chabannes M., Wicker T., Panaud O., RA Barbosa J., Hribova E., Heslop-Harrison P., Habas R., Rivallan R., RA Francois P., Poiron C., Kilian A., Burthia D., Jenny C., Bakry F., RA Brown S., Guignon V., Kema G., Dita M., Waalwijk C., Joseph S., RA Dievart A., Jaillon O., Leclercq J., Argout X., Lyons E., Almeida A., RA Jeridi M., Dolezel J., Roux N., Risterucci A.M., Weissenbach J., RA Ruiz M., Glaszmann J.C., Quetier F., Yahiaoui N., Wincker P.; RT "The banana (Musa acuminata) genome and the evolution of RT monocotyledonous plants."; RL Nature 488:213-217(2012). RN [2] {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18890_001} RP IDENTIFICATION. RC STRAIN=subsp. malaccensis RC {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18890_001}; RG EnsemblPlants; RL Submitted (JAN-2017) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; GSMUA_AchrUn_randomT18890_001; GSMUA_AchrUn_randomP18890_001; GSMUA_AchrUn_randomG18890_001. DR Gramene; GSMUA_AchrUn_randomT18890_001; GSMUA_AchrUn_randomP18890_001; GSMUA_AchrUn_randomG18890_001. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000012960; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000012960}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000012960}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33779 MW; 2C025DFE5D77A477 CRC64; MYRPYWVELG ISRISKSLLE VAKCEHKLLK PRASPKMKKI FGKMEIRRSS RARNLVPSYR DQVRMCRIMT RKTRLVYCKS EQRGRVYTGR IASYEEQHRA VEKAEELQSN LDPIYPSFIK SMVRSHVSSC FWLGLPTRFC KEHLPPYELK MVLEDENGNE FDAIYIGNRT GLSGGWRGFA MEHNLEDGDV LVFELREPAR FKIYIIKAID SEAHEDKITN RHTEGTESQG TEESPEQLLA SQSRKTRSGS RRKPAKTKKS AYKASRPILI FLTAVVFADL PTVGGLKENE GRM // ID M0UHK6_HORVV Unreviewed; 271 AA. AC M0UHK6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_11014.7}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_11014.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_11014.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_11014.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_11014.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_11014.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_11014.7; MLOC_11014.7; MLOC_11014. DR Gramene; MLOC_11014.7; MLOC_11014.7; MLOC_11014. DR InParanoid; M0UHK6; -. DR OMA; NSHAYRH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0UHK6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30272 MW; EC7A27431AFD4507 CRC64; MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE RCFPLGGESG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV HFERVRGLGT GDRLFIGCRR RGDVSAPTAV PPPPAVRVVP ASGHNPREQQ PWSPMCYSTS GSYPTSPATS HAYRRSAEHD HSDMHHAGEP QWDADARSCS PASAPTRRLR LFGVNLDCGP EPEAEAAPAT YGYVHQNPYA AMSPVPSNRG S // ID M0UHK8_HORVV Unreviewed; 213 AA. AC M0UHK8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_11014.9}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_11014.9, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_11014.9} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_11014.9}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_11014.9} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_11014.9}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_11014.10; MLOC_11014.10; MLOC_11014. DR EnsemblPlants; MLOC_11014.6; MLOC_11014.6; MLOC_11014. DR EnsemblPlants; MLOC_11014.8; MLOC_11014.8; MLOC_11014. DR EnsemblPlants; MLOC_11014.9; MLOC_11014.9; MLOC_11014. DR Gramene; MLOC_11014.10; MLOC_11014.10; MLOC_11014. DR Gramene; MLOC_11014.6; MLOC_11014.6; MLOC_11014. DR Gramene; MLOC_11014.8; MLOC_11014.8; MLOC_11014. DR Gramene; MLOC_11014.9; MLOC_11014.9; MLOC_11014. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0UHK8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 213 AA; 24070 MW; 9C75D4CB2D36D8F0 CRC64; MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE RCFPLGGESG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV HFERVRGLGT GDRLFIGCRR RGDVSAPTAV PPPPAVRVVP ASGHNPREQQ PWSPMCYSTS GSYPTSPATS HAYRRSAEHD HSDMHHAGKI KAA // ID M0ULJ8_HORVV Unreviewed; 219 AA. AC M0ULJ8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_12054.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_12054.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_12054.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_12054.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_12054.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_12054.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_12054.1; MLOC_12054.1; MLOC_12054. DR EnsemblPlants; MLOC_12054.3; MLOC_12054.3; MLOC_12054. DR Gramene; MLOC_12054.1; MLOC_12054.1; MLOC_12054. DR Gramene; MLOC_12054.3; MLOC_12054.3; MLOC_12054. DR OMA; VKPMPVS; -. DR OrthoDB; EOG093616XI; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0ULJ8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 219 AA; 25439 MW; 77910B842C539045 CRC64; MAQPNSYEEQ RRRQVQENKR KLDELRLHRL SAAVHEAAVK PMPTKELKLR CIRAPPAPTR RSGRVASLPD QPDYRERKAP RGLPQPPDRV YATDEARDYA FSKAEELKNL LSSDHPSFIR PVTHLYATGS WLKIPVQFKR RYLPPCDEMI FLVDEEDGEF QMRYNAKGCG LCTGWNSFAI GQKLADGDSL VFQLVQRTKF KVYIIRASSY YENEHCRRL // ID M0ULK1_HORVV Unreviewed; 96 AA. AC M0ULK1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_12054.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_12054.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_12054.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_12054.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_12054.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_12054.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_12054.4; MLOC_12054.4; MLOC_12054. DR Gramene; MLOC_12054.4; MLOC_12054.4; MLOC_12054. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0ULK1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 96 AA; 11393 MW; BBD62DBB74CCF1CE CRC64; MFIWLDILQK IPVQFKRRYL PPCDEMIFLV DEEDGEFQMR YNAKGCGLCT GWNSFAIGQK LADGDSLVFQ LVQRTKFKVY IIRASSYYEN EHCRRL // ID M0ULK2_HORVV Unreviewed; 71 AA. AC M0ULK2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_12054.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_12054.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_12054.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_12054.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_12054.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_12054.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_12054.2; MLOC_12054.2; MLOC_12054. DR EnsemblPlants; MLOC_12054.5; MLOC_12054.5; MLOC_12054. DR Gramene; MLOC_12054.2; MLOC_12054.2; MLOC_12054. DR Gramene; MLOC_12054.5; MLOC_12054.5; MLOC_12054. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0ULK2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 60 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 60 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 71 AA; 8261 MW; 65C43B231D8F4819 CRC64; MIFLVDEEDG EFQMRYNAKG CGLCTGWNSF AIGQKLADGD SLVFQLVQRT KFKVYIIRAS SYYENEHCRR L // ID M0ULK3_HORVV Unreviewed; 139 AA. AC M0ULK3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_12054.6}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_12054.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_12054.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_12054.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_12054.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_12054.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_12054.6; MLOC_12054.6; MLOC_12054. DR Gramene; MLOC_12054.6; MLOC_12054.6; MLOC_12054. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0ULK3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 139 AA; 15918 MW; 0BEC08FE8E0F55D9 CRC64; RSGCCTGWGL PQPPDRVYAT DEARDYAFSK AEELKNLLSS DHPSFIRPVT HLYATGSWLK IPVQFKRRYL PPCDEMIFLV DEEDGEFQMR YNAKGCGLCT GWNSFAIGQK LADGDSLVFQ LVQRTKFKVY IIRASSYYE // ID M0UTC1_HORVV Unreviewed; 144 AA. AC M0UTC1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_14005.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_14005.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_14005.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_14005.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_14005.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_14005.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_14005.1; MLOC_14005.1; MLOC_14005. DR Gramene; MLOC_14005.1; MLOC_14005.1; MLOC_14005. DR InParanoid; M0UTC1; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 88 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 88 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 144 AA; 16145 MW; 8E0AE721EA05ACBC CRC64; MVRSHVSSCF WLGLPSSFCK DHLPPREHKM VLEDEEGVEF DAVYIGNRTG LSGGWRGFSM HHDLEDGDSL VFELAEPDRF KIYIFKAIED AKEAEPNGKN ADMDTADTNS AEEVLDQMDS PVSEPPSSPE PLKGAKKRKL HGRR // ID M0UV43_HORVV Unreviewed; 1080 AA. AC M0UV43; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_14584.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_14584.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_14584.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_14584.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_14584.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_14584.2; MLOC_14584.2; MLOC_14584. DR Gramene; MLOC_14584.2; MLOC_14584.2; MLOC_14584. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0UV43; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 967 1051 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1080 AA; 119950 MW; 478225CC7EDF2842 CRC64; MAAPEGSGAG GGEGPRGSRV NQELWYACAG PLVALPPPGS LVVYFPQGHS EQVAASMRKD ADAQIPSYPN LPSKLICILH SVTMQSDPET DEVYARMTLQ PVSNCDKEIL LASELALKQN KPQTEFFCKT LTASDTSTHG GFSVPRRAAE RIFPRLDFSL QPPAQELQAR DLHDTIWTFR HIFRGQPKRH LLTTGWSLFI SGKRLIAGDS VLFIRDAKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGVL AAAAHAAANN SQFTIFYNPR ASPSEFVIPF AKYQKAVYGN QLSLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNIQVAWD EAAPSERRTR VSLWDIEPVI APFFIYPTPL FTAKRARQPG MIDDDTSGMD NLFKRTMPWL GEEICKKDMN TQNSIVPGLN LAQSVQWMNM QQNLSLAGTV MQPELLNSLA GKHVQNLSAA DISRQISFQP QFLQQNNIQF DTSLLPQQNQ QAEQLAKAIA TPNQLENIMA PQKVDQDCYS DQKQRAVTQT VQGSQANLNI TQPEHVVQAQ FEQPQVILQA QLQQQQPLVQ SHTIFQGGLQ EIQVLQQQQQ PQHHQQVQHS VQEQQQMKIR PVHVPSDANM NTQLSSDHQM KLQLLKALHS QQHLTMEQQK MLFDLQQQVI NSQSNPQQRV QGATQTVGFH NSNTIQYATQ QKAQSHQPIE GSPGGTIPVA KSDTITSIGA SSLNVTSRMQ LVRTDNVPSS STSPSTTTNP VLLHSIPSSS KNQSLPTAAK TSQSSVGLGS TIEQEMKHYQ SVKPTIMIPK MIEQGPATER DYINNPHMDY LDTSSSATSV CLSQADGSLQ QNFPSSSFDQ HQLLRDTAPD SEFEISDPTN NLLFGVNIDG QLGLPLNADA LLANSIENDK FMDEMAGNGI SNYISSKDSQ QELSSSMISH SLGVADMGFN SIDSATNDPP FLNRNSRAPA PAHQRMRTYT KVHKRGAVGR SIDMNRYSGY DELKHDIARM FGIEGQLGDQ SRVGWKLVYE DHEKDVLLVG DDPWEDFLNC VRCIRILSPQ EEMQMRLVGD FGDGFLPNQA CSSSDGGQPW // ID M0UYN4_HORVV Unreviewed; 285 AA. AC M0UYN4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_15725.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_15725.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_15725.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_15725.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_15725.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_15725.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_15725.2; MLOC_15725.2; MLOC_15725. DR Gramene; MLOC_15725.2; MLOC_15725.2; MLOC_15725. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0UYN4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 31873 MW; C8B268BF3F5AB667 CRC64; MAAISSSKRR SPSASTAASS SSADGIGEPG PQLVTRKRRS VRRGPRGGVR WMPAIRPHQV PGLRVILQKE LRNSDISQLG RIVLPKKESE AYLPTLASKD GRSLRMHDLL NAQEWTFKYR YWPNNNSRMY VLENTGDYVR THNLRVGDFI MIYKDDDNNR FVIRAKKAGD DLVAAMPQFH EHISGILPIP EVDDYVSLIP SPADISAFIP QADENYEIFD GIFNSLPEIP VANVRYSDFF DPFSDCMDAS NPSLNGNNSA NLASHFHDER TGLSLFPNPK SGPLM // ID M0UYN7_HORVV Unreviewed; 58 AA. AC M0UYN7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_15725.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_15725.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_15725.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_15725.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_15725.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_15725.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_15725.5; MLOC_15725.5; MLOC_15725. DR Gramene; MLOC_15725.5; MLOC_15725.5; MLOC_15725. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0UYN7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 58 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 58 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 58 AA; 7192 MW; DFEFE92D4D050597 CRC64; MHDLLNAQEW TFKYRYWPNN NSRMYVLENT GDYVRTHNLR VGDFIMIYKD DDNNRFVT // ID M0UYN8_HORVV Unreviewed; 180 AA. AC M0UYN8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_15725.6}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_15725.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_15725.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_15725.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_15725.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_15725.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_15725.4; MLOC_15725.4; MLOC_15725. DR EnsemblPlants; MLOC_15725.6; MLOC_15725.6; MLOC_15725. DR Gramene; MLOC_15725.4; MLOC_15725.4; MLOC_15725. DR Gramene; MLOC_15725.6; MLOC_15725.6; MLOC_15725. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0UYN8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 64 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 64 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 180 AA; 20508 MW; 0C0CB5B039A56831 CRC64; MHDLLNAQEW TFKYRYWPNN NSRMYVLENT GDYVRTHNLR VGDFIMIYKD DDNNRFVIRA KKAGDDLVAA MPQFHEHISG ILPIPEVDDY VSLIPSPADI SAFIPQADEN YEIFDGIFNS LPEIPVANVR YSDFFDPFSD CMDASNPSLN GNNSANLASH FHDERTGLSL FPNPKSGPLM // ID M0V0P1_HORVV Unreviewed; 419 AA. AC M0V0P1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_16480.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_16480.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_16480.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_16480.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_16480.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_16480.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_16480.1; MLOC_16480.1; MLOC_16480. DR Gramene; MLOC_16480.1; MLOC_16480.1; MLOC_16480. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V0P1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 419 AA; 47118 MW; A0C5F58131922218 CRC64; MNEDCESCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNCIR IPRELSTHLR SRISDTIKLD VPNGRAYDVV VSWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE KMASCFQPPS EIFGAFPPEQ AAPNAGHVQT QLEFDYTMSI GCNLTKSQDE KVLEIARKIR SEIPLYVAIM KKINVNVKDC SINIPLRLVS HFKEETCSAV IKLEAPDGNI YNVRASKHSE DQVVLQSGWD AFVAANHIQK NDLLIFHSKG KIRLKILALD PSGHEKNPSC FDMKIFSKTG EGSVRIPDAR PRTVEVIDLT SSDDDHTERE DAGRSTGRRK KVPGSHAKAR KMAPASSPST KSGSDTHKLK LPISNNDNLQ GPSRPPYILA RGITLTGRVE KKVQEKVQAI GSEVLSMWQ // ID M0V0P2_HORVV Unreviewed; 429 AA. AC M0V0P2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_16480.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_16480.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_16480.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_16480.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_16480.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_16480.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_16480.2; MLOC_16480.2; MLOC_16480. DR EnsemblPlants; MLOC_16480.4; MLOC_16480.4; MLOC_16480. DR Gramene; MLOC_16480.2; MLOC_16480.2; MLOC_16480. DR Gramene; MLOC_16480.4; MLOC_16480.4; MLOC_16480. DR OMA; MASCFQP; -. DR OrthoDB; EOG093607P2; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V0P2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 429 AA; 48244 MW; BEEE55493DB9BC3F CRC64; MNEDCESCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNCIR IPRELSTHLR SRISDTIKLD VPNGRAYDVV VSWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE KMASCFQPPS EIFGAFPPGE PCDHHVLHEQ AAPNAGHVQT QLEFDYTMSI GCNLTKSQDE KVLEIARKIR SEIPLYVAIM KKINVNVKDC SINIPLRLVS HFKEETCSAV IKLEAPDGNI YNVRASKHSE DQVVLQSGWD AFVAANHIQK NDLLIFHSKG KIRLKILALD PSGHEKNPSC FDMKIFSKTG EGSVRIPDAR PRTVEVIDLT SSDDDHTERE DAGRSTGRRK KVPGSHAKAR KMAPASSPST KSGSDTHKLK LPISNNDNLQ GPSRPPYILA RGITLTGRVE KKVQEKVQAI GSEVLSMWQ // ID M0V0P3_HORVV Unreviewed; 415 AA. AC M0V0P3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_16480.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_16480.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_16480.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_16480.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_16480.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_16480.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_16480.3; MLOC_16480.3; MLOC_16480. DR Gramene; MLOC_16480.3; MLOC_16480.3; MLOC_16480. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V0P3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 415 AA; 46814 MW; 3313F7A557978C23 CRC64; MNEDCESCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNCIR IPRELSTHLR SRISDTIKLD VPNGRAYDVV VSWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE KMASCFQPPS EIFGAFPPEQ AAPNAGHVQT QLEFDYTMSI GCNLTKSQDE KVLEIARKIR SEIPLYVAIM KKINVNVKDC SINIPLRLVS HFKEETCSAV IKLEAPDGNI YNVRASKHSE DQVVLQSGWD AFVAANHIQK NDLLIFHSKG KIRLKILALD PSGHEKNPSC FDMKIFSKTG EGSVRIPDAR PRTVEVIDLT SSDDDHTERE DAGRSTGRRK KVPGSHAKAR KMAPASSPRS DTHKLKLPIS NNDNLQGPSR PPYILARGIT LTGRVEKKVQ EKVQAIGSEV LSMWQ // ID M0V0P5_HORVV Unreviewed; 412 AA. AC M0V0P5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_16480.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_16480.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_16480.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_16480.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_16480.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_16480.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_16480.5; MLOC_16480.5; MLOC_16480. DR Gramene; MLOC_16480.5; MLOC_16480.5; MLOC_16480. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V0P5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 180 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 412 AA; 46437 MW; 38E7CB5C9442EA9E CRC64; MNEDCESCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNCIR IPRELSTHLR SRISDTIKLD VPNGRAYDVV VSWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE KMASCFQPPS EIFGAFPPGH VQTQLEFDYT MSIGCNLTKS QDEKVLEIAR KIRSEIPLYV AIMKKINVNV KDCSINIPLR LVSHFKEETC SAVIKLEAPD GNIYNVRASK HSEDQVVLQS GWDAFVAANH IQKNDLLIFH SKGKIRLKIL ALDPSGHEKN PSCFDMKIFS KTGEGSVRIP DARPRTVEVI DLTSSDDDHT EREDAGRSTG RRKKVPGSHA KARKMAPASS PSTKSGSDTH KLKLPISNND NLQGPSRPPY ILARGITLTG RVEKKVQEKV QAIGSEVLSM WQ // ID M0V0P6_HORVV Unreviewed; 97 AA. AC M0V0P6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_16480.6}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_16480.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_16480.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_16480.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_16480.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_16480.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_16480.6; MLOC_16480.6; MLOC_16480. DR Gramene; MLOC_16480.6; MLOC_16480.6; MLOC_16480. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V0P6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 97 AA; 10838 MW; BA8CD0C320262568 CRC64; MTKSCVGGKL FSLGFCNEYA STLPSGDQTL MLQLEDKEWP TTLRVKGSKK IICRGWSKFA SDNNLKLGDI CLFKIAERST SSLAMRVHFI RKSGVFL // ID M0V456_HORVV Unreviewed; 194 AA. AC M0V456; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_18038.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18038.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18038.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18038.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18038.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18038.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_18038.1; MLOC_18038.1; MLOC_18038. DR Gramene; MLOC_18038.1; MLOC_18038.1; MLOC_18038. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V456; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 21193 MW; 24754B3825D8B682 CRC64; MGKNCERCTK WQEHCYWSHM ADEKKHLFKL MVGDFAETMS VPGRFAKKFD GHISEAINLK PPGGKSWSIK VAGDTAGLVL RSGWKEFLDA HGIEEGDGLL FKYSGASSFD VLMFDPTGCQ KPPSPRPVKR RGCDDDTEEN SAGAKDRRCG YHASNKDEER APHPPPAANG DGAGLELTLY RGAGKSIALA GKHD // ID M0V457_HORVV Unreviewed; 324 AA. AC M0V457; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_18038.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18038.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18038.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18038.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18038.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18038.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_18038.2; MLOC_18038.2; MLOC_18038. DR Gramene; MLOC_18038.2; MLOC_18038.2; MLOC_18038. DR InParanoid; M0V457; -. DR OMA; HKNSSRC; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V457; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 324 AA; 35846 MW; B3EF784D895886A7 CRC64; MIPSPPMQKM GKNCERCTKW QEHCYWSHMA DEKKHLFKLM VGDFAETMSV PGRFAKKFDG HISEAINLKP PGGKSWSIKV AGDTAGLVLR SGWKEFLDAH GIEEGDGLLF KYSGASSFDV LMFDPTGCQK PPSPRPVKRR GCDDDTEENS AGAKDRRCGY HASNKDEERA PHPPPAANGD GAGLELTLYR GAGKSIALAD QEGVGMDHGD APANAKTRYY FCKNGPVSEF HLTEEDKEEI SSIPVPAEPR NPVFVNVMHP NHVCAATRTS IVRVPPEFAA RHLQTIGREI VLRRAGGKGR WHVRYAAGDH YRGFCGRGWR DFAR // ID M0V4Y9_HORVV Unreviewed; 826 AA. AC M0V4Y9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18401.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18401.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18401.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18401.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18401.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_18401.1; MLOC_18401.1; MLOC_18401. DR Gramene; MLOC_18401.1; MLOC_18401.1; MLOC_18401. DR InParanoid; M0V4Y9; -. DR OMA; ASSAENC; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V4Y9; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 696 789 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 826 AA; 92329 MW; CEBAD0B4953FA617 CRC64; MPPAAMPPPP PPPQGTSTGD PLYDELWHAC AGPLVTVPRV GDMVYYFPQG HIEQVEASMN QVAANQMRLY DLPSKLLCRV LNVELKAEAD TDEVYAQVML MPEPEQSEAA TTTTEKSSSA TGGTMPARPA VRSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMTQSPP TQELVAKDLH GMEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGESGELRV GVRRAMRQLS NIASSVISSH SMHLGVLATA WHAINTKTMF TVYYKPRTSR SEFIIPYDKY TESVKNIYSI GTRFKMRFEG EEAPEQRFTG TIVGSDNLDQ LWPESSWRSL KVRWDESSTI PRPDRVSPWE IEPASSPPVN PLPLSRAKRS RPNVPPASPE SSVRTKEGAT KADMDCAQAQ RNQNNTVLPG HEQRSNKLTD INDFDATVQK PMVWSTPPPN IGKNNPLTFQ QRPSVHNSIQ LRRREADFKD ASSGAQHFGD SLGFFMQTTF DEAPNRLGSF KNQFQDHSYA RQFADPYLFM HQQPSLTVES SRKMHTENNE LHFWNGPGTV YGNSIDHVQD FRFKEHPSNW LSPQFSRAEQ PRVIRPHASI APIELEKTTE GSDFKIFGFK VDTASAGFNH LNSPMAATHE PVLQTQPSVS LDHLQTDCSP EVSLSIAGTT DNEKNIQQCP QSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFVDY DELTAELDKM FDFDGELMSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSMV RKICIYTKEE VQKMNSKPSD ARKEEGSVEG DGATEKAHLP VSSDLNSSQL GCVKAD // ID M0V4Z0_HORVV Unreviewed; 768 AA. AC M0V4Z0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18401.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18401.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18401.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18401.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18401.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_18401.2; MLOC_18401.2; MLOC_18401. DR Gramene; MLOC_18401.2; MLOC_18401.2; MLOC_18401. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V4Z0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 638 731 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 768 AA; 86133 MW; 1C57698B59D0478C CRC64; MNQVAANQMR LYDLPSKLLC RVLNVELKAE ADTDEVYAQV MLMPEPEQSE AATTTTEKSS SATGGTMPAR PAVRSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMTQS PPTQELVAKD LHGMEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRAMRQ LSNIASSVIS SHSMHLGVLA TAWHAINTKT MFTVYYKPRT SRSEFIIPYD KYTESVKNIY SIGTRFKMRF EGEEAPEQRF TGTIVGSDNL DQLWPESSWR SLKVRWDESS TIPRPDRVSP WEIEPASSPP VNPLPLSRAK RSRPNVPPAS PESSVRTKEG ATKADMDCAQ AQRNQNNTVL PGHEQRSNKL TDINDFDATV QKPMVWSTPP PNIGKNNPLT FQQRPSVHNS IQLRRREADF KDASSGAQHF GDSLGFFMQT TFDEAPNRLG SFKNQFQDHS YARQFADPYL FMHQQPSLTV ESSRKMHTEN NELHFWNGPG TVYGNSIDHV QDFRFKEHPS NWLSPQFSRA EQPRVIRPHA SIAPIELEKT TEGSDFKIFG FKVDTASAGF NHLNSPMAAT HEPVLQTQPS VSLDHLQTDC SPEVSLSIAG TTDNEKNIQQ CPQSSKDVQS KSHGASTRSC TKVHKQGVAL GRSVDLSKFV DYDELTAELD KMFDFDGELM SSNKNWQIVY TDNEGDMMLV GDDPWEEFCS MVRKICIYTK EEVQKMNSKP SDARKEEGSV EGDGATEKAH LPVSSDLNSS QLGCVKAD // ID M0V513_HORVV Unreviewed; 954 AA. AC M0V513; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_18435.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18435.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18435.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18435.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18435.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18435.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_18435.1; -. DR EnsemblPlants; MLOC_18435.1; MLOC_18435.1; MLOC_18435. DR Gramene; MLOC_18435.1; MLOC_18435.1; MLOC_18435. DR InParanoid; M0V513; -. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V513; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 293 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 293 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 954 AA; 107375 MW; 95BD8F8CDDF6A2A4 CRC64; MSRDALARQN RPRSRDDEEE GETCKMQSKE EEEVETCKMQ SKEEEEEVEV EMFDKRFQIR KASTGSLGKG KRIEEPIELS DSDDHDEDYK MEKAAKYKEK KRIHNHSGDH KKKKKKHVSS HGREKTRSGD SDKDKRRDKL LSLNKNKDHL PLKEKSWERP SSQGGEKKMH RCDHHNDNRS SKMWRSVYDK YKGMQKKEMN KDTKLRPVHN GDSREEKKNT TLVISKEAKM PMLDNSNWGN KRKMTTMVPH KAKKLRTSDK DEKAGSYDRK KTIRGNTGQR VQSGLKEDKK VKFAFSKVIQ NKHFMEFLLI PPDVAEAPKM VGLTNRHVCL EDSEGKSSIV RLSEVDGSLA FCQGWDNFVS DHSIKWAEML VFEYTGCSKF SVRVFGVNSW ERVSFSLERR GEEKKQKESD HAPNDLVPFH TVGSSRDIDD HHYSSGEYIG SKRPKAKSGG YTDNAVVSPG NLVAKSMNAV PGARRMSANS TQDPSGVVGG IVRGSSMAPE NKDGYSANGK HTANTIFSSY SRGTTRTPET TAIPDEAPLA QENEDMVALD NKELNLPIGG CKTKCDTSVT CNNEKTTRFG IVPVTADEAP LSQENGDAVE LTAFPRHIED AVMMKGSTSA QCAEIHGSIE DLRRKQEGNT VQLECTAAVD KCTKNNKMDT NRNTCSKYEY PGASQCLEKW KEASVSGREA LDGTGLIRRE KGLKTEEKSV GAIGVNPVER GYDSTHSCVP SQISKSGLTR TKNEHSVNGK DNTVKPETKM EQMGPMESIG CRQERTNIPA SANRAVERQT EHHFFRQGDT KSSNPVPLVL PVKVEVSELD DHPVLKANLQ FVVPSSAQTR LVSCLDTINS LLLQFTITST VLLLSCLYAL VDSDIRHPST KVTKLYLAIL VNLEGWYRTY TKIAVSLMWF KAKALGVRTK LVRLLMKMEN PLSCNHRIRS HFFKCCYEII FILV // ID M0V514_HORVV Unreviewed; 890 AA. AC M0V514; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_18435.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18435.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18435.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18435.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18435.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18435.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_18435.2; MLOC_18435.2; MLOC_18435. DR Gramene; MLOC_18435.2; MLOC_18435.2; MLOC_18435. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V514; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 293 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 293 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 890 AA; 99712 MW; AFAD76D964C14B84 CRC64; MSRDALARQN RPRSRDDEEE GETCKMQSKE EEEVETCKMQ SKEEEEEVEV EMFDKRFQIR KASTGSLGKG KRIEEPIELS DSDDHDEDYK MEKAAKYKEK KRIHNHSGDH KKKKKKHVSS HGREKTRSGD SDKDKRRDKL LSLNKNKDHL PLKEKSWERP SSQGGEKKMH RCDHHNDNRS SKMWRSVYDK YKGMQKKEMN KDTKLRPVHN GDSREEKKNT TLVISKEAKM PMLDNSNWGN KRKMTTMVPH KAKKLRTSDK DEKAGSYDRK KTIRGNTGQR VQSGLKEDKK VKFAFSKVIQ NKHFMEFLLI PPDVAEAPKM VGLTNRHVCL EDSEGKSSIV RLSEVDGSLA FCQGWDNFVS DHSIKWAEML VFEYTGCSKF SVRVFGVNSW ERVSFSLERR GEEKKQKESD HAPNDLVPFH TVGSSRDIDD HHYSSGEYIG SKRPKAKSGG YTDNAVVSPG NLVAKSMNAV PGARRMSANS TQDPSGVVGG IVRGSSMAPE NKDGYSANGK HTANTIFSSY SRGTTRTPET TAIPDEAPLA QENEDMVALD NKELNLPIGG CKTKCDTSVT CNNEKTTRFG IVPVTADEAP LSQENGDAVE LTAFPRHIED AVMMKGSTSA QCAEIHGSIE DLRRKQEGNT VQLECTAAVD KCTKNNKMDT NRNTCSKYEY PGASQCLEKW KEASVSGREA LDGTGLIRRE KGLKTEEKSV GAIGVNPVER GYDSTHSCVP SQISKSGLTR TKNEHSVNGK DNTVKPETKM EQMGPMESIG CRQERTNIPA SANRAVERQT EHHFFRQGDT KSSNPVPLVL PVKVEVSELD DHPVLKANLQ FVVPSSAQTR LVSCLDTINS LLLQFTITST VLLLSCLYAL VDSDIRHPST KVTKLYLAIL // ID M0V515_HORVV Unreviewed; 557 AA. AC M0V515; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_18435.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18435.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18435.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18435.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18435.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18435.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_18435.3; MLOC_18435.3; MLOC_18435. DR Gramene; MLOC_18435.3; MLOC_18435.3; MLOC_18435. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V515; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 293 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 293 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 557 AA; 63341 MW; 83D0E05AF6AB23CF CRC64; MSRDALARQN RPRSRDDEEE GETCKMQSKE EEEVETCKMQ SKEEEEEVEV EMFDKRFQIR KASTGSLGKG KRIEEPIELS DSDDHDEDYK MEKAAKYKEK KRIHNHSGDH KKKKKKHVSS HGREKTRSGD SDKDKRRDKL LSLNKNKDHL PLKEKSWERP SSQGGEKKMH RCDHHNDNRS SKMWRSVYDK YKGMQKKEMN KDTKLRPVHN GDSREEKKNT TLVISKEAKM PMLDNSNWGN KRKMTTMVPH KAKKLRTSDK DEKAGSYDRK KTIRGNTGQR VQSGLKEDKK VKFAFSKVIQ NKHFMEFLLI PPDVAEAPKM VGLTNRHVCL EDSEGKSSIV RLSEVDGSLA FCQGWDNFVS DHSIKWAEML VFEYTGCSKF SVRVFGVNSW ERVSFSLERR GEEKKQKESD HAPNDLVPFH TVGSSRDIDD HHYSSGEYIG SKRPKAKSGG YTDNAVVSPG NLVAKSMNAV PGARRMSANS TQDPSGVVGG IVRGSSMAPE NKDGYSANGK HTANTIFSSY SRGTTRTPET TAIPDEAPLA QENEDMVALD NKELKFN // ID M0V517_HORVV Unreviewed; 840 AA. AC M0V517; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_18435.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_18435.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_18435.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_18435.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_18435.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_18435.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_18435.5; MLOC_18435.5; MLOC_18435. DR Gramene; MLOC_18435.5; MLOC_18435.5; MLOC_18435. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V517; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 293 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 293 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 840 AA; 94207 MW; 3E7E81B4B9DE8DA4 CRC64; MSRDALARQN RPRSRDDEEE GETCKMQSKE EEEVETCKMQ SKEEEEEVEV EMFDKRFQIR KASTGSLGKG KRIEEPIELS DSDDHDEDYK MEKAAKYKEK KRIHNHSGDH KKKKKKHVSS HGREKTRSGD SDKDKRRDKL LSLNKNKDHL PLKEKSWERP SSQGGEKKMH RCDHHNDNRS SKMWRSVYDK YKGMQKKEMN KDTKLRPVHN GDSREEKKNT TLVISKEAKM PMLDNSNWGN KRKMTTMVPH KAKKLRTSDK DEKAGSYDRK KTIRGNTGQR VQSGLKEDKK VKFAFSKVIQ NKHFMEFLLI PPDVAEAPKM VGLTNRHVCL EDSEGKSSIV RLSEVDGSLA FCQGWDNFVS DHSIKWAEML VFEYTGCSKF SVRVFGVNSW ERVSFSLERR GEEKKQKESD HAPNDLVPFH TVGSSRDIDD HHYSSGEYIG SKRPKAKSGG YTDNAVVSPG NLVAKSMNAV PGARRMSANS TQDPSGVVGG IVRGSSMAPE NKDGYSANGK HTANTIFSSY SRGTTRTPET TAIPDEAPLA QENEDMVALD NKELNLPIGG CKTKCDTSVT CNNEKTTRFG IVPVTADEAP LSQENGDAVE LTAFPRHIED AVMMKGSTSA QCAEIHGSIE DLRRKQEGNT VQLECTAAVD KCTKNNKMDT NRNTCSKYEY PGASQCLEKW KEASVSGREA LDGTGLIRRE KGLKTEEKSV GAIGVNPVER GYDSTHSCVP SQISKSGLTR TKNEHSVNGK DNTVKPETKM EQMGPMESIG CRQERTNIPA SANRAVERQT EHHFFRQGDT KSSNPVPLVL PVKVEVSELD DHPVLKANLQ FVVPSSAQTR // ID M0V692_HORVV Unreviewed; 220 AA. AC M0V692; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_19134.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_19134.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_19134.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_19134.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_19134.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_19134.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_19134.1; MLOC_19134.1; MLOC_19134. DR Gramene; MLOC_19134.1; MLOC_19134.1; MLOC_19134. DR InParanoid; M0V692; -. DR OMA; RMRREHM; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 220 AA; 23730 MW; D1C2344AD92533DA CRC64; MALTAGGGES RGAEQDGGGG GVELSRSSGN GGNGEERRMR REHMFDKVVT PSDVGKLNRL VVPKHFAERH ILPRLLGGAA RAACPGAVLR FEDGRGGGRA WAFRFSYWSS SQSYVMTKGW SAFVRDRRLA AGDTVSFCRT GARLFIDCRR RGTGIGASAP PTRLLAPAVM PQVVTLMPQR STSSGETAPH VRCFRLFGVD LELIGAEPLS LDLQLALMRR // ID M0V9U3_HORVV Unreviewed; 479 AA. AC M0V9U3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_20970.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_20970.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_20970.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_20970.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_20970.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_20970.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_20970.1; MLOC_20970.1; MLOC_20970. DR Gramene; MLOC_20970.1; MLOC_20970.1; MLOC_20970. DR InParanoid; M0V9U3; -. DR OMA; FWMGLPV; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V9U3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 114 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 428 465 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 479 AA; 53886 MW; DF6FF0A8ACF2DE92 CRC64; MMRTKNVKSE PGKHPGFRYK HKAQRTITKT SKRKKTGRPA GSKRYSKRKI VKKPMLVDNT NISKSNKDMD ADFEPEIPDG DVRKKYASVS GFYGSAFDRA LEVENKLPAE GPSFVKLMRK SHVVKGFWLG VPLSFCRDHL PKDDVTIALE DEDGHRFDTN YLARKQGLSG GWHGFVVRHG LKVGDAVIFQ LVGLKRFKVY ILRENKFTTT DGALGLLSLD TSMENNIPDE KDEETWDEDA KSKEEDPEVT KVITNKASED DSCNDLFSEE AGNDYIRSAD ADPGPDFNAM MKTFRAFKTA IDSSAVIDRK LVPDRLLRTY YKLCGAKKAL LHRRLPENIN PTLAAGVIVE TASIAEGIRS YDPTTCEDLA AWKKTLESME LLGMDVGFMR KRVDELLFLL DAARPSLDGH AAPEEGYKYN EEVMKLERGR AADKVRALES KMASLKDALK EMDTEMEEIA EERRRGHAIA VLQLAAAPW // ID M0V9U4_HORVV Unreviewed; 472 AA. AC M0V9U4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_20970.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_20970.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_20970.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_20970.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_20970.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_20970.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_20970.2; MLOC_20970.2; MLOC_20970. DR Gramene; MLOC_20970.2; MLOC_20970.2; MLOC_20970. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V9U4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 421 458 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 472 AA; 53189 MW; E541625EC5AAAE79 CRC64; MMRTKNVKSE PGKHPGFRYK HKAQRTITKT SKRKKTGRPA GSKRYSKRKI VKKPMLVDNT NISKSNKDMD ADFEPEIPDG DVRKKYASAF DRALEVENKL PAEGPSFVKL MRKSHVVKGF WLGVPLSFCR DHLPKDDVTI ALEDEDGHRF DTNYLARKQG LSGGWHGFVV RHGLKVGDAV IFQLVGLKRF KVYILRENKF TTTDGALGLL SLDTSMENNI PDEKDEETWD EDAKSKEEDP EVTKVITNKA SEDDSCNDLF SEEAGNDYIR SADADPGPDF NAMMKTFRAF KTAIDSSAVI DRKLVPDRLL RTYYKLCGAK KALLHRRLPE NINPTLAAGV IVETASIAEG IRSYDPTTCE DLAAWKKTLE SMELLGMDVG FMRKRVDELL FLLDAARPSL DGHAAPEEGY KYNEEVMKLE RGRAADKVRA LESKMASLKD ALKEMDTEME EIAEERRRGH AIAVLQLAAA PW // ID M0V9U5_HORVV Unreviewed; 415 AA. AC M0V9U5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_20970.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_20970.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_20970.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_20970.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_20970.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_20970.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_20970.3; MLOC_20970.3; MLOC_20970. DR Gramene; MLOC_20970.3; MLOC_20970.3; MLOC_20970. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0V9U5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 374 411 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 415 AA; 46559 MW; 6BD77CC947AB1ED4 CRC64; MLVDNTNISK SNKDMDADFE PEIPDGDVRK KYASVSGFYG SAFDRALEVE NKLPAEGPSF VKLMRKSHVV KGFWLGVPLS FCRDHLPKDD VTIALEDEDG HRFDTNYLAR KQGLSGGWHG FVVRHGLKVG DAVIFQLVGL KRFKVYILRE NKFTTTDGAL GLLSLDTSME NNIPDEKDEE TWDEDAKSKE EDPEVTKVIT NKASEDDSCN DLFSEEAGND YIRSADADPG PDFNAMMKTF RAFKTAIDSS AVIDRKLVPD RLLRTYYKLC GAKKALLHRR LPENINPTLA AGVIVETASI AEGIRSYDPT TCEDLAAWKK TLESMELLGM DVGFMRKRVD ELLFLLDAAR PSLDGHAAPE EGYKYNEEVM KLERGRAADK VRALESKMAS LKDALKEMDT EMEEIAEERR RGHAI // ID M0VDN7_HORVV Unreviewed; 406 AA. AC M0VDN7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_23884.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_23884.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_23884.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_23884.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_23884.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_23884.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_23884.1; MLOC_23884.1; MLOC_23884. DR Gramene; MLOC_23884.1; MLOC_23884.1; MLOC_23884. DR InParanoid; M0VDN7; -. DR OMA; DNELHEG; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 396 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 396 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 46192 MW; 7DB8DD602975C6C6 CRC64; MLVLSLYISP PPPPPHSPGR IRESMKSEMG KKGCERCKKW QEHYYWEHMD VSKTRFFKLM TQDSQERIRI PDKFASSFIG QTQSSRGFRL KAPSGETWHV GVTKVADGLF FSSGWGDFVK AHELQENDLL VFTFSGNSSF DVLIFDASGY EKLSSLFAGA DSMRKHFDGM VGQQVEQYSQ SDDDDDDYGD NADDDTSVPS QSIESRQKVS ASKKISGKSK PRKELLESPN SSSSCDVKHE ATEEEENDDD TYADFDCYYS RAAKQLPDDE KREIIGLASI QPGNPAFITV LLRAHLPPKV NFLYIPVKFA VKHLHMRSHE VLLLRPNREE RWHVRYYCYE GGSSGGSFKG QSWAKFVCDN KLREGDVCTF ELMKDARNEK KKKARTTMTV HVARRRKSNG RFALVG // ID M0VEQ4_HORVV Unreviewed; 321 AA. AC M0VEQ4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_25058.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_25058.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_25058.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_25058.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_25058.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_25058.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_25058.1; MLOC_25058.1; MLOC_25058. DR Gramene; MLOC_25058.1; MLOC_25058.1; MLOC_25058. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VEQ4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 206 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 206 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 35417 MW; DC802075B95A71B6 CRC64; MAIEQSLKRK RGRPAGGGSP SANKSQRDKK VMEHKIALVH RRLALLDSES DKDADVQPTV TMDDKLAAVV DQQPVIIKCE DIDDEDEHVP LRIMRSPRAD SEQKKLLDVS QTHNAQDADT AKKKGGRLVN AKSNMGQNLK LSIPRRTLVE SGGSNSRRSD IDDDLVPMVA AVNCHKTCAS VQGKFGSAME RAKEVLLKLP AEHPSFVKHM LHSHVVQGFW LGLPSNFCNK HLPKEDTTIV LEDEDRHNYD AKYLGAKQGL SAGWRGFAIN HDIKVGDVVV FQLVSSAKFK VYILRANNFT TTDGALGLLC LEAGKEKILS E // ID M0VEQ5_HORVV Unreviewed; 323 AA. AC M0VEQ5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_25058.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_25058.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_25058.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_25058.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_25058.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_25058.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_25058.2; MLOC_25058.2; MLOC_25058. DR Gramene; MLOC_25058.2; MLOC_25058.2; MLOC_25058. DR InParanoid; M0VEQ5; -. DR OMA; NCGSAMA; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VEQ5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 208 299 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 208 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 35674 MW; D4DA3E7DA35A00E4 CRC64; MAIEQSLKRK RGRPAGGGSP SANKSQRDKK VMEHKIALVH RRLALLDSES DKDADVQPTV TMDDKLAAVV DQQPVIIKCE DIDDEDEHVP LRIMRSPRAD SEQKKLLDVS QTHNAQDADT AKQKKGGRLV NAKSNMGQNL KLSIPRRTLV ESGGSNSRRS DIDDDLVPMQ VAAVNCHKTC ASVQGKFGSA MERAKEVLLK LPAEHPSFVK HMLHSHVVQG FWLGLPSNFC NKHLPKEDTT IVLEDEDRHN YDAKYLGAKQ GLSAGWRGFA INHDIKVGDV VVFQLVSSAK FKVYILRANN FTTTDGALGL LCLEAGKEKI LSE // ID M0VF11_HORVV Unreviewed; 136 AA. AC M0VF11; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_25537.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_25537.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_25537.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_25537.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_25537.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_25537.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_25537.1; MLOC_25537.1; MLOC_25537. DR Gramene; MLOC_25537.1; MLOC_25537.1; MLOC_25537. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VF11; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 78 135 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 136 AA; 15380 MW; 5BC510E44639A3D4 CRC64; MVSPFTRDHA AGLTPLFVGW FCACSQADAT TDEVYAQLSL LPENEELVRR MREATDDVSG GEDGETVKQR FARMPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPHLDYN QQRPSQELVA KDLHGTEWKF RHIYRG // ID M0VF12_HORVV Unreviewed; 237 AA. AC M0VF12; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_25537.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_25537.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_25537.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_25537.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_25537.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_25537.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_25537.2; MLOC_25537.2; MLOC_25537. DR Gramene; MLOC_25537.2; MLOC_25537.2; MLOC_25537. DR InParanoid; M0VF12; -. DR OMA; PTENENQ; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VF12; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 179 236 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 237 AA; 25519 MW; 9AE6ADBC1F58068C CRC64; MAGIDLNTVE EDEEESSAEP LLAGTGCGGD CSSQSHSHSH SQTQSGYNGQ ASSPVATPPS RPSAVCLELW HACAGPVAPM PRKGSVVVYL PQGHLDHLGD APAHAAASPA AAVPPHVFCR VVDVTLHADA TTDEVYAQLS LLPENEELVR RMREATDDVS GGEDGETVKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPHLDY NQQRPSQELV AKDLHGTEWK FRHIYRG // ID M0VHK8_HORVV Unreviewed; 261 AA. AC M0VHK8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_28796.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_28796.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_28796.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_28796.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_28796.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_28796.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_28796.1; MLOC_28796.1; MLOC_28796. DR Gramene; MLOC_28796.1; MLOC_28796.1; MLOC_28796. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VHK8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 59 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 59 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 29887 MW; 58B24E591151E872 CRC64; MATFLSHWHI GLERDGPDVF FAGSVWADFL DMLDLSETDV LLIKYQGCMN FSIEKFGHGD DEHIEEEPGC SEESKQSPGA QSQEEEHVST RKRKQSNCKA PGAQGQEGKH VSTRTRKRKE SNCKTPRAQG QEGERSKGER MLERHTTSRH VNMSCFFEIG KTGSQDWLKK EIGSDGVLKA FHLPDHFGYK KNCKILLRPM DRNESWEVKG SVIKRPNTVY TMNRFRGGWA KFCEENGLKK GDLCTFKVVN GKLWEVNIER R // ID M0VHL1_HORVV Unreviewed; 284 AA. AC M0VHL1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_28796.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_28796.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_28796.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_28796.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_28796.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_28796.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_28796.2; MLOC_28796.2; MLOC_28796. DR EnsemblPlants; MLOC_28796.4; MLOC_28796.4; MLOC_28796. DR Gramene; MLOC_28796.2; MLOC_28796.2; MLOC_28796. DR Gramene; MLOC_28796.4; MLOC_28796.4; MLOC_28796. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VHL1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 217 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 217 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 284 AA; 32696 MW; 495A06001A84C8DC CRC64; MLIPHEFLRR GYISEEDLNK RPLMATFLSH WHIGLERDGP DVFFAGSVWA DFLDMLDLSE TDVLLIKYQG CMNFSIEKFG HGDDEHIEEE PGCSEESKQS PGAQSQEEEH VSTRKRKQSN CKAPGAQGQE GKHVSTRTRK RKESNCKTPR AQGQEGERSK GERMLERHTT SRHVNMSCFF EIGKTGSQDW LKKEIGSDGV LKAFHLPDHF GYKKNCKILL RPMDRNESWE VKGSVIKRPN TVYTMNRFRG GWAKFCEENG LKKGDLCTFK VVNGKLWEVN IERR // ID M0VHL2_HORVV Unreviewed; 406 AA. AC M0VHL2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_28796.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_28796.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_28796.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_28796.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_28796.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_28796.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_28796.5; MLOC_28796.5; MLOC_28796. DR Gramene; MLOC_28796.5; MLOC_28796.5; MLOC_28796. DR InParanoid; M0VHL2; -. DR OMA; QNGNNEH; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VHL2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 108 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 339 406 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 108 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 339 406 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 46264 MW; 58C36A5D1B0F0057 CRC64; MQHISDEIAG WFVGTGGRGA GRTVLIISPF GKKLWDITVG RYSNGLFLGG QWPQFVAAHG IGIGWYLVFK QVRRGIFTLK VFDNNFVIKP FGVTITVLSQ LKNACARKPQ FIVPLQTSFK EKMLIPHEFL RRGYISEEDL NKRPLMATFL SHWHIGLERD GPDVFFAGSV WADFLDMLDL SETDVLLIKY QGCMNFSIEK FGHGDDEHIE EEPGCSEESK QSPGAQSQEE EHVSTRKRKQ SNCKAPGAQG QEGKHVSTRT RKRKESNCKT PRAQGQEGER SKGERMLERH TTSRHVNMSC FFEIGKTGSQ DWLKKEIGSD GVLKAFHLPD HFGYKKNCKI LLRPMDRNES WEVKGSVIKR PNTVYTMNRF RGGWAKFCEE NGLKKGDLCT FKVVNGKLWE VNIERR // ID M0VIS2_HORVV Unreviewed; 95 AA. AC M0VIS2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_3052.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_3052.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_3052.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_3052.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_3052.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_3052.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_3052.1; MLOC_3052.1; MLOC_3052. DR Gramene; MLOC_3052.1; MLOC_3052.1; MLOC_3052. DR OMA; IVHHINI; -. DR OrthoDB; EOG09360WXI; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 76 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 76 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 95 AA; 10805 MW; C2FF185556B509B8 CRC64; MPLDFNKHFA VVPTEFKLKN NTDCSWRMTV KLMTGRVTLD QGWATFAIVH HINIGYMVTF KLLTPDTLKV IIFDDDGIEV VNKCGERGEA FAARD // ID M0VSE4_HORVV Unreviewed; 455 AA. AC M0VSE4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_36861.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_36861.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_36861.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_36861.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_36861.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_36861.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_36861.1; -. DR EnsemblPlants; MLOC_36861.1; MLOC_36861.1; MLOC_36861. DR Gramene; MLOC_36861.1; MLOC_36861.1; MLOC_36861. DR InParanoid; M0VSE4; -. DR OMA; CASAHEE; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 365 455 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 365 455 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 455 AA; 49875 MW; 351DAB95E2F4FDF5 CRC64; MAGMGAARCM NAACGAPAPT AAGVGEWRKG WPLRSGGFAL LCDKCGLAFE QLVFCDIFHQ KESGWRDCSF CGKHLHCGCV ASKNSFDLLD SGGVQCMNCM KNPGVQSVTV SCQVAPKLFL SPQNNQRLFG KSDELLPGRP LESPSLMLDS RNDDIAILTK SSHPFLVKNL ELGQSSNILR QKETENGARQ IKWEQPTLSI CDMGRMPFLI RPQSALESPQ SQCTRRDDNR DPAADSTTSE SVSEACLSMS LGIANNGNKM EATSTMERPM VSPTTPFSDG REPATALSPF QHAQRARHFL TRPPRVADGA AFDPMKDGFP NLRVARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR PLTIQDAKGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ LQAGDTGDLQ LVSCI // ID M0VTD5_HORVV Unreviewed; 229 AA. AC M0VTD5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_37086.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_37086.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_37086.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_37086.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_37086.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_37086.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_37086.2; -. DR EnsemblPlants; MLOC_37086.2; MLOC_37086.2; MLOC_37086. DR Gramene; MLOC_37086.2; MLOC_37086.2; MLOC_37086. DR InParanoid; M0VTD5; -. DR OMA; NICANMT; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VTD5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 222 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 229 AA; 25678 MW; 68737E9A0E951309 CRC64; MLNKNAYSYY PAPNQEHTHP FSLDNNQAKD PGSIPNFGIE SFNTTSLAPN MSAHMPPMEG PLSTKEPEAS EDMPARVVAI KDERDARNGI ELKCETVDAL PELKQGHESC ATKFNSGEYQ VILRKELTKS DVANVGRIVL PKKDAEASLP PLCERDPVIL QMDDMVLPVT WKFKYRFWPN NKSRMYILDS TSEFVKTHGL QAGDALIIYK NPVPGKYIVR GEKAIQQTN // ID M0VW08_HORVV Unreviewed; 502 AA. AC M0VW08; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_37768.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_37768.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_37768.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_37768.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_37768.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_37768.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_37768.1; MLOC_37768.1; MLOC_37768. DR Gramene; MLOC_37768.1; MLOC_37768.1; MLOC_37768. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VW08; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 398 500 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 398 500 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 502 AA; 56779 MW; FAEB0E4F61D15AC0 CRC64; MSNSCECCKR YWTHLHGKVK CFFTHMDRNS GHSMVMPESF VNCFAWKLSG TIELEAPNGN VYDVRITERR NKTLLRSGWG AFVDANHIVE SDSLMFRHRG NCRFKVVVFD SSGCEKVVSC ARRQGNTNDQ APSTNSTDIL TSFTDGNTHS SARGRSDDYC RKRAKKDAIA YPSEAEDSPY EHQSSESDDQ MLPTPVYVLS GKCYVTDEDE ASIIALAQEI QPEMPLLVVM MTKPSVKPYP DLVIPKDYAL AHFPRKNQTI KLQLPDQSKK WYCEFRVKSD GGHFNLKECG FARDNHLLEG DMCVFHPMMN RKGRTFKVMV HLLCKASIDH TSSKNGLTSK KNVPTLCIKE DTNEGEEIPS LGHEEHGIND EEPYMMPRGT CLTRLQKKKV LGKVEAIGSD LHIYIAVMTR SSILVSLSFA IKYSATYLRE GSGSLVLQVE GKSQVWHDEM REKGGAMRIR AGWTSFASDN NLREGDICLF ELMKNEGGPK KMMVYIIRRE LC // ID M0VW09_HORVV Unreviewed; 504 AA. AC M0VW09; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_37768.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_37768.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_37768.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_37768.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_37768.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_37768.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_37768.2; MLOC_37768.2; MLOC_37768. DR Gramene; MLOC_37768.2; MLOC_37768.2; MLOC_37768. DR InParanoid; M0VW09; -. DR OMA; TIDHPSS; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VW09; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 229 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 400 502 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 229 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 400 502 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 504 AA; 56939 MW; 6BB9919F8EF2E8FE CRC64; MSNSCECCKR YWTHLHGKVK CFFTHMDRNS GHSMVMPESF VNCFAWKLSG TIELEAPNGN VYDVRITERR NKTLLRSGWG AFVDANHIVE SDSLMFRHRG NCRFKVVVFD SSGCEKVVSC ARRQGNTNDQ APSTNSTDIL TSFTDGNTHS SARGRSDDYC RKRAKKDAIA YPSEGSSEDS PYEHQSSESD DQMLPTPVYV LSGKCYVTDE DEASIIALAQ EIQPEMPLLV VMMTKPSVKP YPDLVIPKDY ALAHFPRKNQ TIKLQLPDQS KKWYCEFRVK SDGGHFNLKE CGFARDNHLL EGDMCVFHPM MNRKGRTFKV MVHLLCKASI DHTSSKNGLT SKKNVPTLCI KEDTNEGEEI PSLGHEEHGI NDEEPYMMPR GTCLTRLQKK KVLGKVEAIG SDLHIYIAVM TRSSILVSLS FAIKYSATYL REGSGSLVLQ VEGKSQVWHD EMREKGGAMR IRAGWTSFAS DNNLREGDIC LFELMKNEGG PKKMMVYIIR RELC // ID M0VW11_HORVV Unreviewed; 470 AA. AC M0VW11; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_37768.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_37768.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_37768.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_37768.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_37768.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_37768.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_37768.4; MLOC_37768.4; MLOC_37768. DR Gramene; MLOC_37768.4; MLOC_37768.4; MLOC_37768. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VW11; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 366 468 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 366 468 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 470 AA; 52894 MW; 381591A82B86C207 CRC64; MPESFVNCFA WKLSGTIELE APNGNVYDVR ITERRNKTLL RSGWGAFVDA NHIVESDSLM FRHRGNCRFK VVVFDSSGCE KVVSCARRQG NTNDQAPSTN STDILTSFTD GNTHSSARGR SDDYCRKRAK KDAIAYPSEG SSEDSPYEHQ SSESDDQMLP TPVYVLSGKC YVTDEDEASI IALAQEIQPE MPLLVVMMTK PSVKPYPDLV VIPKDYALAH FPRKNQTIKL QLPDQSKKWY CEFRVKSDGG HFNLKECGFA RDNHLLEGDM CVFHPMMNRK GRTFKVMVHL LCKASIDHTS SKNGLTSKKN VPTLCIKEDT NEGEEIPSLG HEEHGINDEE PYMMPRGTCL TRLQKKKVLG KVEAIGSDLH IYIAVMTRSS ILVSLSFAIK YSATYLREGS GSLVLQVEGK SQVWHDEMRE KGGAMRIRAG WTSFASDNNL REGDICLFEL MKNEGGPKKM MVYIIRRELC // ID M0VW12_HORVV Unreviewed; 469 AA. AC M0VW12; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_37768.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_37768.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_37768.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_37768.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_37768.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_37768.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_37768.3; MLOC_37768.3; MLOC_37768. DR EnsemblPlants; MLOC_37768.5; MLOC_37768.5; MLOC_37768. DR Gramene; MLOC_37768.3; MLOC_37768.3; MLOC_37768. DR Gramene; MLOC_37768.5; MLOC_37768.5; MLOC_37768. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VW12; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 365 467 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 365 467 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 469 AA; 52795 MW; 8D745FC7167485C6 CRC64; MPESFVNCFA WKLSGTIELE APNGNVYDVR ITERRNKTLL RSGWGAFVDA NHIVESDSLM FRHRGNCRFK VVVFDSSGCE KVVSCARRQG NTNDQAPSTN STDILTSFTD GNTHSSARGR SDDYCRKRAK KDAIAYPSEG SSEDSPYEHQ SSESDDQMLP TPVYVLSGKC YVTDEDEASI IALAQEIQPE MPLLVVMMTK PSVKPYPDLV IPKDYALAHF PRKNQTIKLQ LPDQSKKWYC EFRVKSDGGH FNLKECGFAR DNHLLEGDMC VFHPMMNRKG RTFKVMVHLL CKASIDHTSS KNGLTSKKNV PTLCIKEDTN EGEEIPSLGH EEHGINDEEP YMMPRGTCLT RLQKKKVLGK VEAIGSDLHI YIAVMTRSSI LVSLSFAIKY SATYLREGSG SLVLQVEGKS QVWHDEMREK GGAMRIRAGW TSFASDNNLR EGDICLFELM KNEGGPKKMM VYIIRRELC // ID M0VXM4_HORVV Unreviewed; 600 AA. AC M0VXM4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_38232.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_38232.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_38232.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_38232.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_38232.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_38232.1; -. DR EnsemblPlants; MLOC_38232.1; MLOC_38232.1; MLOC_38232. DR EnsemblPlants; MLOC_38232.3; MLOC_38232.3; MLOC_38232. DR Gramene; MLOC_38232.1; MLOC_38232.1; MLOC_38232. DR Gramene; MLOC_38232.3; MLOC_38232.3; MLOC_38232. DR OMA; HICFNPR; -. DR OrthoDB; EOG0936082M; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VXM4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 65938 MW; 3F64E1F885C098AA CRC64; MFRQSVRERG SEEGEDEMAA GDGENKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA HLDYKQVRPS QELVAKDLHG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL RGDDGELRLG VRRAVQLRNE ALFEAVNTND SKLHTLSAVA SSLENRSIFH VCFDPRSGAS EFIVPYWRFS KSLNHTFSIG MRFKVSNESD DANERSTGLI SGISEVDPIR WPASKWRCLM VRWDDSTHCN HQRRVSPWEI ERVGGSISVT DCLSASSSKR AKLYFPQGNL DAPVTDGNGC LDSMEAGNFH RVLQGQELLM GSRTQGAGRS QSPDVARFRP PDHIRFSANV RNYIPQQSSE FPYHSSGFGE SVRFSEVLQG QEMSQALRFY QGSAFDARTQ HGGAGPFGYT QRSAAPIGLS PAAQGYPLNQ FTPSAVAAAK VSSPSSVLMF NQATVPQFDL ESRTSSYIGA YGGQCRPMEM VRETEKTWPC AQRQRPSVTG TGCRRFEEWI KASTPASTDG SRPGSAAARD VVVGRSNCRL FGFSLTDQKA VGGAGGDGGA NEGNSNDEQD CADPRVLDLF GRGHHAPSAM RAIVAAPLGM // ID M0VXM5_HORVV Unreviewed; 309 AA. AC M0VXM5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_38232.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_38232.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_38232.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_38232.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_38232.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_38232.4; MLOC_38232.4; MLOC_38232. DR Gramene; MLOC_38232.4; MLOC_38232.4; MLOC_38232. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VXM5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 34901 MW; E4AF0401EF89BAA8 CRC64; MFRQSVRERG SEEGEDEMAA GDGENKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA HLDYKQVRPS QELVAKDLHG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL RGDDGELRLG VRRAVQLRNE ALFEAVNTND SKLHTLSAVA SSLENRSIFH VCFDPRSGAS EFIVPYWRFS KSLNHTFSIG MRFKVSNESD DANERSTGLI SGISEVDPIR WPASKWRCLM VRWDDSTHCN HQRRVSPWEI ERVGGSISVT DCLSASSSKR AKLYFPQGNL DAPVTGRSNG LRHTSVDIC // ID M0VXM6_HORVV Unreviewed; 333 AA. AC M0VXM6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_38232.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_38232.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_38232.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_38232.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_38232.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_38232.5; MLOC_38232.5; MLOC_38232. DR Gramene; MLOC_38232.5; MLOC_38232.5; MLOC_38232. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0VXM6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 37558 MW; AE06485B49EAF35F CRC64; HEHAWRFLCS SPGCGGLFRT SGDYKQVRPS QELVAKDLHG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL RGDDGELRLG VRRAVQLRNE ALFEAVNTND SKLHTLSAVA SSLENRSIFH VCFDPRSGAS EFIVPYWRFS KSLNHTFSIG MRFKVSNESD DANERSTGLI SGISEVDPIR WPASKWRCLM VRWDDSTHCN HQRRVSPWEI ERVGGSISVT DCLSASSSKR AKLYFPQGNL DAPVTDGNGC LDSMEAGNFH RVLQGQELLM GSRTQGAGRS QSPDVARFRP PDHIRFSANV RNYIPQQSSE FPYHSSGFGE SVR // ID M0VZB6_HORVV Unreviewed; 267 AA. AC M0VZB6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_38822.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_38822.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_38822.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_38822.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_38822.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_38822.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_38822.1; MLOC_38822.1; MLOC_38822. DR Gramene; MLOC_38822.1; MLOC_38822.1; MLOC_38822. DR InParanoid; M0VZB6; -. DR OMA; HEHEDYG; -. DR OrthoDB; EOG09360NDI; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29242 MW; B47B0614175D8D5C CRC64; MLRKHIYPDE LAQHKRAFFF AAASSPTSSS SPLASPAPSA AAARREHLFD KTVTPSDVGK LNRLVIPKQH AEKHFPLQLP SASAAVPGEC KGVLLNFDDA TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVE FYRAASGNNQ LFIDCKLRSK STTTTTSVNS EAAPSPAPVT RTVRLFGVDL LIAPAARHAH EHEDYGMAKT NKRTMEASVA APTPAHAVWK KRCVDFALTY RLATTPQCPR SRDQLEGVQA AGSTFAL // ID M0W2H8_HORVV Unreviewed; 527 AA. AC M0W2H8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_4129.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_4129.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_4129.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_4129.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_4129.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_4129.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_4129.1; MLOC_4129.1; MLOC_4129. DR EnsemblPlants; MLOC_4129.2; MLOC_4129.2; MLOC_4129. DR EnsemblPlants; MLOC_4129.3; MLOC_4129.3; MLOC_4129. DR Gramene; MLOC_4129.1; MLOC_4129.1; MLOC_4129. DR Gramene; MLOC_4129.2; MLOC_4129.2; MLOC_4129. DR Gramene; MLOC_4129.3; MLOC_4129.3; MLOC_4129. DR OMA; SIHEDNP; -. DR OrthoDB; EOG093604OW; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0W2H8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 211 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 428 523 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 211 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 428 523 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 527 AA; 59862 MW; 8CD4BE31AFE6254B CRC64; MEVQSPIENA NYPEGRPQPM GMQSPTENAD PSHGHPQPMR MQPPTEKLDD PVGFSRPTEM HPPTENVNHL FGHSQPMQMQ PSTEVVDHFA QMQPSTEAVD HSSGHAQTMQ MQPASEVVDH SNGHAQTMQM QLLCRPTKLR QSKLQWDYSS KGNKTATSPS DTPGDSLSSE HDIEGCTSPR YTLTHNTRLN TVQKEEVDEK VKSIHKDNPI FVAVMRRFNV TRTFTLTFSK KYVNTHVGDK ERSVCLQRFG KRWDVQFSSS REVKRIVSGW RKFVKDNDVE TGDICIFELL KIDEMCTMEV HIIHAKDFDR PSQIGGRNVK RRCKETITKT VEPSHSRLQL VQMQLHNASV EDSYSRPQPM EMQSPSTERQ IRVETVNSCP GNEGDSSMSE DSVTLTGCMG VHLRSIPLIQ KKLVKQKVDL IGSKIPICVL VMKKANVTGR FTLSMSMKYV RTHLGDEVRS MWLERDGERC QVTLGRKPQA NRVVGGWVKF ARDNGLRTGD VCLLERLRHR EECTMKVHIV RRVKLAG // ID M0W2H9_HORVV Unreviewed; 233 AA. AC M0W2H9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_4129.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_4129.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_4129.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_4129.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_4129.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_4129.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_4129.4; MLOC_4129.4; MLOC_4129. DR Gramene; MLOC_4129.4; MLOC_4129.4; MLOC_4129. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0W2H9; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 233 AA; 26451 MW; 3625B19AF312488C CRC64; MCTMEVHIIH AKDFDRPSQI GGRNVKRRCK ETITKTVEPS HSRLQLVQMQ LHNASVEDSY SRPQPMEMQS PSTERQIRVE TVNSCPGNEG DSSMSEDSVT LTGCMGVHLR SIPLIQKKLV KQKVDLIGSK IPICVLVMKK ANVTGRFTLS MSMKYVRTHL GDEVRSMWLE RDGERCQVTL GRKPQANRVV GGWVKFARDN GLRTGDVCLL ERLRHREECT MKVHIVRRVK LAG // ID M0W2I0_HORVV Unreviewed; 216 AA. AC M0W2I0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_4129.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_4129.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_4129.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_4129.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_4129.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_4129.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_4129.5; MLOC_4129.5; MLOC_4129. DR Gramene; MLOC_4129.5; MLOC_4129.5; MLOC_4129. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0W2I0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 216 AA; 25138 MW; B3D963CFEF4D7635 CRC64; MGCERCERRD ERDYCDLDDR EKHFLMFIVD GCGQEMIVPD EFLRRFRGEI PREINLETRN GHSYTIGVAK YPDKLVLQAG WGVFVKTYDL RMDDCVVFRY KGNSQFDVII FDRFGREKAF SVITENAPPV QESYNSGTEN LDRSHGHSSP WKCSRLLKMP TILKGVLSLW ECSHLLKMQT LLMGILSPCE CNHLLKNWMI LLVLVGPRKC THLLKM // ID M0W5J2_HORVV Unreviewed; 227 AA. AC M0W5J2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_44012.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_44012.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_44012.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_44012.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_44012.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_44012.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_44012.1; MLOC_44012.1; MLOC_44012. DR Gramene; MLOC_44012.1; MLOC_44012.1; MLOC_44012. DR InParanoid; M0W5J2; -. DR OMA; DAMARCK; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 160 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 50 160 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 24482 MW; A6FD2368BA1F6C0E CRC64; MLRKHTYFDE LAQSKRAFAA SAALSAPTTS GDAGGSASPP SPAAVREHLF DKTVTPSDVG KLNRLVIPKQ NAEKHFPLQL PAGGGESKGL LLNFEDDAGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKGL GAGDVVGFYR SAAGRTGEDS KFFIDCRLRP NTNTAAEADP VDQSSAPVQK AVRLFGVDLL AAPEQGMPGG CKRARDLVKP PPPKVAFKKQ CIELALA // ID M0W9W6_HORVV Unreviewed; 215 AA. AC M0W9W6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_45867.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_45867.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_45867.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_45867.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_45867.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_45867.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_45867.1; MLOC_45867.1; MLOC_45867. DR Gramene; MLOC_45867.1; MLOC_45867.1; MLOC_45867. DR InParanoid; M0W9W6; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 215 AA; 24018 MW; 5AF7B6BDDA021818 CRC64; NVFPQIIQKE FVHRFKGEIP GEIELQTKNK CTYKIKVVKN QEGQLVLAAG WGRFIEKFSL QTRDSIILFS YNGKSQFSVI ILDQLGREKA SSVVNPFPPR ALERHTNCAE TVSQHPSDGH PLPVERLVQS TDAAANILHR PTQIPETADC SLPLMIMPST AHFDVHHQQQ AMLMQPPLNH SSSSEASAGE GDGSFSSHDH VQNALGFVRV VRRKY // ID M0WAJ6_HORVV Unreviewed; 688 AA. AC M0WAJ6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_4657.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_4657.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_4657.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_4657.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_4657.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_4657.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_4657.1; -. DR EnsemblPlants; MLOC_4657.1; MLOC_4657.1; MLOC_4657. DR Gramene; MLOC_4657.1; MLOC_4657.1; MLOC_4657. DR InParanoid; M0WAJ6; -. DR OMA; PAGMNQI; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WAJ6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 369 470 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 626 676 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 369 470 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 688 AA; 76873 MW; 51EAB1BCF3D09BC9 CRC64; MHVCFFCFYV SSGSFEHGTF CETFHSEVAG WRKCEACGKR LHCGCIVSVH AYALLDAGGV DCILCARKSY VAMAPSQMWS TPTVHMPQNV ADRKDSYVKS WRPPAGQISS QWRQNHQLWN MSSIQTDLQQ RLAYEFDRPS GSEKLPPGRT FIHAQEKKSD DMHDRPTTPA GMGQIIRDRY ANGLGQQTNM DPTHSSTPYQ REGPNQNSLH DPSHHVGESD PLSSRKGIVS DGGSTASTGF KLDPHHPSIL KDDAASTLPT MGGYTITNYP PVPGRSDHLR IIPNNPQQPP TTVPVSVVQK QFYSHSVIEP DYQAQFRNGK PRMESRMDAK ARSQLLPRYW PRITDKELQH LSGEYPKNST SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD ASGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMHLQAGDT VSFSRIDPEG KLVMGFRKTK TQEQIFRQEE PTKPANAAPN LPDVNVNVTA PDSSPNSALA RPNKVNTENK DTSPVEQAAA CKMEKTGVAQ KEGQGTVRSS PGPVKRKATS LGSKIKRFRI DNEESMELKI TWEEAQELLR PPLKAPSVVI VDGHEFEEYE EPPVLGRKTY FVTDQSGENH QWAQCEDCSK WRKLPVDALL PSKWTCSDNK WDPERTTCVS PQEASMEQLA ELIPIKAG // ID M0WAJ7_HORVV Unreviewed; 682 AA. AC M0WAJ7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_4657.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_4657.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_4657.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_4657.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_4657.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_4657.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_4657.2; MLOC_4657.2; MLOC_4657. DR Gramene; MLOC_4657.2; MLOC_4657.2; MLOC_4657. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WAJ7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 363 464 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 620 670 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 76168 MW; 5213DCDCBA83AA11 CRC64; MHVCFFCFYV SSGSFEHGTF CETFHSEVAG WRKCEACGKR LHCGCIVSVH AYALLDAGGV DCILCARKSY VAMAPSQMWS TPTVHMPQNV ADRKDSYVKS WRPPAGQISS QWRQNHQLWN MSSIQTDLQQ RLAYEFDRPS GSEKLPPGRT FIHAQEKKSD DMHDRPTTPA GMGQIIRDRY ANGLGQQTNM DPTHSSTPYQ REGPNQNSLH DPSHHVGESD PLSSRKGIVS DGGSTASTGF KLDPHHPSIL KDDAASTLPT MGGYTITNYP PVPGRSDHLR IIPNNPQQPP TTVPVSVVQK QFYSHSVIEP DYQAQFRNGK PRMESRMDAK ARSQLLPRYW PRITDKELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP PISQPEGLPL KVQDASGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMHLQ AGDTVSFSRI DPEGKLVMGF RKTKTQEQIF RQEEPTKPAN AAPNLPDVNV NVTAPDSSPN SALARPNKVN TENKDTSPVE QAAACKMEKT GVAQKEGQGT VRSSPGPVKR KATSLGSKIK RFRIDNEESM ELKITWEEAQ ELLRPPLKAP SVVIVDGHEF EEYEEPPVLG RKTYFVTDQS GENHQWAQCE DCSKWRKLPV DALLPSKWTC SDNKWDPERT TCVSPQEASM EQLAELIPIK AG // ID M0WB08_HORVV Unreviewed; 420 AA. AC M0WB08; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_47091.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_47091.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_47091.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_47091.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_47091.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_47091.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_47091.1; MLOC_47091.1; MLOC_47091. DR Gramene; MLOC_47091.1; MLOC_47091.1; MLOC_47091. DR OrthoDB; EOG0936036Q; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WB08; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd09612; Jacalin; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001229; Jacalin-like_lectin_dom. DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant. DR Pfam; PF02362; B3; 1. DR Pfam; PF01419; Jacalin; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00915; Jacalin; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF51101; SSF51101; 2. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51752; JACALIN_LECTIN; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Lectin {ECO:0000256|SAAS:SAAS00710107}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 339 Jacalin-type lectin. FT {ECO:0000259|PROSITE:PS51752}. FT DOMAIN 353 420 Jacalin-type lectin. FT {ECO:0000259|PROSITE:PS51752}. FT DNA_BIND 41 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 45868 MW; 2C62980ED6A0BDD5 CRC64; MEFTTITAST AADGRPWTPP LAADHEADEA AAAAVVKEYM FEKMVTPSDT GTLNRLVIPK YHAEKCFPLD ASSNGNGLLL NFEDSAGKPW RFRYSYWNNS QCYVMTKGWA GFVRETLLGA GDTVFFSRGV GEAARGRLFV DWRRRRGPDV VLSSPRQRGF TLLSVGNDGF AIACPDPHLE GDGVKEVDKA YITKIGPWGG NRGIFNDINK SPLRLNSVTI RSGEVIYSLA FSYSDNYGKQ HHAGPWGGCK DFSYGSFDTI QLGPSEFLTK VSGTIAFSSQ YSSNVITSVI FTTTARQYGP FGGGVGIPFQ SPVTSNGSIV GFFAHAEWVV ESIGLYVNSE SKLWEPTKGQ DLVTKIGPWG GDSGTPNDLD VLPRRLMSVV VHNSTVINSL TFAYIDWDGQ QQTAGPWGWT PEPFDGKIDT // ID M0WB09_HORVV Unreviewed; 382 AA. AC M0WB09; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_47091.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_47091.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_47091.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_47091.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_47091.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_47091.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_47091.2; MLOC_47091.2; MLOC_47091. DR Gramene; MLOC_47091.2; MLOC_47091.2; MLOC_47091. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WB09; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR001229; Jacalin-like_lectin_dom. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF51101; SSF51101; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 382 AA; 41806 MW; A72F2A67157DCAEB CRC64; MEFTTITAST AADGRPWTPP LAADHEADEA AAAAVVKEYM FEKMVTPSDT GTLNRLVIPK YHAEKCFPLD ASSNGNGLLL NFEDSAGKPW RFRYSYWNNS QCYVMTKGWA GFVRETLLGA GDTVFFSRGV GEAARGRLFV DWRRRRGPDV VLSSPRQRGF TLLSVGNDGF AIACPDPHLE GDGVKEVDKA YITKIGPWGG NRGIFNDINK SPLRLNSVTI RSGEVIYSLA FSYSDNYGKQ HHAGPWGGCK DFSYGSFDTY GPFGGGVGIP FQSPVTSNGS IVGFFAHAEW VVESIGLYVN SESKLWEPTK GQDLVTKIGP WGGDSGTPND LDVLPRRLMS VVVHNSTVIN SLTFAYIDWD GQQQTAGPWG WTPEPFDGKI DT // ID M0WCA1_HORVV Unreviewed; 201 AA. AC M0WCA1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_48372.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_48372.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_48372.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_48372.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_48372.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_48372.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_48372.1; MLOC_48372.1; MLOC_48372. DR Gramene; MLOC_48372.1; MLOC_48372.1; MLOC_48372. DR InParanoid; M0WCA1; -. DR OMA; ELMECNT; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WCA1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 180 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 180 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 201 AA; 21631 MW; 35A2388881FA4716 CRC64; MAEAIPTDSS TTVTPQVYRR HKSSEESRGI SSGKDHGVAS STGEPSQAAI SAGPQDKPDP ESAKACLEME KTQPSILPLL GKPYFACVVC KSHVQTPFQV VVPRSLAPFL PPKPTPATLT WQGRSWEMRF TGGRQVQRLE AGWRSFALDN ALRLGDGCVF ELVGGDGEGI VFRVQVLRAE IPASIRQRAG GYTPSSPIVL D // ID M0WCA2_HORVV Unreviewed; 175 AA. AC M0WCA2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_48372.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_48372.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_48372.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_48372.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_48372.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_48372.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_48372.2; MLOC_48372.2; MLOC_48372. DR Gramene; MLOC_48372.2; MLOC_48372.2; MLOC_48372. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WCA2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 154 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 154 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 18722 MW; 4AB278D793FD0FA0 CRC64; MHADAGGKDH GVASSTGEPS QAAISAGPQD KPDPESAKAC LEMEKTQPSI LPLLGKPYFA CVVCKSHVQT PFQVVVPRSL APFLPPKPTP ATLTWQGRSW EMRFTGGRQV QRLEAGWRSF ALDNALRLGD GCVFELVGGD GEGIVFRVQV LRAEIPASIR QRAGGYTPSS PIVLD // ID M0WF52_HORVV Unreviewed; 446 AA. AC M0WF52; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_50915.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_50915.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_50915.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_50915.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_50915.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_50915.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_50915.1; MLOC_50915.1; MLOC_50915. DR Gramene; MLOC_50915.1; MLOC_50915.1; MLOC_50915. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WF52; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 311 413 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 446 AA; 49076 MW; A3538A48BB8AF8FB CRC64; MADANGSSSP SPQHSSGGQA VTGDFVAVPG AGPHGSFQAL LASVGGHAPP GAAPANVLPQ HQYQQYHHQL FGPVGALIQA PPQPMPLRVQ PPSPALPPPH CAQSNLLLPA GRHYYQHWQP PAPQIGAAAQ PQVPMGAGGF GDWTMYNVNS STFVSVACGS SSSVVRGNNG YHQSSRLCSA TAWPNFSPRS PYATVYPHGM QQDHQAITYH GNNNNQQGSG FVSNFRVDQP ISPASNNHSP PQLLDEATYT KRAKRNTMRT QKGRNSEDPP EMESENSDVL DHPMLDENHN LNQGQEIFTT RFNCKDYYMI VWKELTNSDV GNIGRIVLPK RDAEANLPAL LERDGLILKM DDLKLPVTWN FKFRFWPNNK SRMYVLESTG EFSKNHNLEP QDTFIIYKSL ESGKFLVRAE KVTGQCATLL CPECKEEGRI NKQCGFTRNL NAKKKR // ID M0WF53_HORVV Unreviewed; 462 AA. AC M0WF53; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_50915.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_50915.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_50915.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_50915.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_50915.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_50915.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_50915.2; MLOC_50915.2; MLOC_50915. DR Gramene; MLOC_50915.2; MLOC_50915.2; MLOC_50915. DR InParanoid; M0WF53; -. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360NNM; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WF53; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 311 413 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 462 AA; 51006 MW; 4765BFCCEBED5C9A CRC64; MADANGSSSP SPQHSSGGQA VTGDFVAVPG AGPHGSFQAL LASVGGHAPP GAAPANVLPQ HQYQQYHHQL FGPVGALIQA PPQPMPLRVQ PPSPALPPPH CAQSNLLLPA GRHYYQHWQP PAPQIGAAAQ PQVPMGAGGF GDWTMYNVNS STFVSVACGS SSSVVRGNNG YHQSSRLCSA TAWPNFSPRS PYATVYPHGM QQDHQAITYH GNNNNQQGSG FVSNFRVDQP ISPASNNHSP PQLLDEATYT KRAKRNTMRT QKGRNSEDPP EMESENSDVL DHPMLDENHN LNQGQEIFTT RFNCKDYYMI VWKELTNSDV GNIGRIVLPK RDAEANLPAL LERDGLILKM DDLKLPVTWN FKFRFWPNNK SRMYVLESTG EFSKNHNLEP QDTFIIYKSL ESGKFLVRAE KVTGQCATLL CPECKEEGRI NKQCGFTRNL NAKKKRTPRS NHKKRRGNTM KH // ID M0WFT6_HORVV Unreviewed; 817 AA. AC M0WFT6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5109.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5109.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5109.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5109.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5109.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5109.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5109.1; MLOC_5109.1; MLOC_5109. DR Gramene; MLOC_5109.1; MLOC_5109.1; MLOC_5109. DR InParanoid; M0WFT6; -. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 176 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 176 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 817 AA; 92866 MW; 94E23A0830FBB5F7 CRC64; MTWRTRRQVE GNKEGALSAF DRAGEAAVIL PRPLRPSLPP NHHPSTRSSP RAMNMGGDRS AGFPGEEDEG RPRPRFFKVL VGDFARRLEI PRDFLGHIPE MGLGGSNVPA APPVKATLKR SEGKTWAVEL EKVDRGVFLT TGWPKFVVEN ALREYEFLLF GYDKKMHFMV SVFGRNACEK AVRSSGIGAQ ATTSLERKLP CDIFLTCKRG YTGDELMKTT NNPRRSHSLV MTPDQSDTKI VPVRGSTQGN VHIPSQSFAD IHLHEVDGLK DELKTYLLSK VPMDDDKAKA IAEVMRRLHV DRVTVDLFCA TLCLYKWNSD AAAEVFNTCR GKPQIQNQFL KQKLVLQFDF IKRELRHFFP TGDDCSPQTH DSRKNSLVVP NVSTQPQQYY LPAVKSKLVD DHELCDLLYK QKRRIVKWRP QRISETPRRS PRLAHLKNSC GSTESALKEK PEVLESSLSS TTDRVEDRTG QAHLLYEKPD RVSKGDNQHA IGSLSLDFKR LKKTLCESVL SEKPQHHQEN EEKIDQGNNG EIFEEQVDRN AAETSESFMG RDCIDSSPPT KSEVSSMRIN ELCLTWKPSV HTNSFENVLL HIQCNNFTKT ITHVQGIIRG SPSDLHCSAI IEAVVQKEIL KWDSCLQDVD AQRVVIALLE HAKKIKEIHN FNMESRKEEF STKLQDQLKW QLKELEGVCT SLEFDYKKAT CDSNIAVSTS QEQKKKLQAL QYEIKGLQQS MMMEDEIQKL VRQVAEHESL VQKSLMERVR VKTVLKSYAQ ILVEVKERLA SNELGLIDVD ALVKIEMDNL RKEIEISKGR LLNIIFK // ID M0WFT7_HORVV Unreviewed; 793 AA. AC M0WFT7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5109.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5109.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5109.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5109.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5109.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5109.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5109.2; MLOC_5109.2; MLOC_5109. DR Gramene; MLOC_5109.2; MLOC_5109.2; MLOC_5109. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 90221 MW; F61BB860EF1A78FF CRC64; MNMGGDRSAG FPGEEDEGRP RPRFFKVLVG DFARRLEIPR DFLGHIPEMG LGGSNVPAAP PVKATLKRSE GKTWAVELEK VDRGVFLTTG WPKFVVENAL REYEFLLFGY DKKMHFMVSV FGRNACEKAV RSSGIGAQAT TSLERKLPCD IFLTCKRGYT GDELMKTTNN PRRSHSLVMT PDQSDTKIVP VRGSTQGNVH IPSQSFADIH LHEVDGLKDE LKTYLLSKVP MDDDKAKAIA EVMRRLHVDR VTVDLFCATL CLYKWNSDAA AEVFNTCRGK PQIQNQFLKQ KLVLQFDFIK RELRHFFPTG DDCSPQTHDS RKNSLVVPNV STQPQQYYLP AVKSKLVDDH ELCDLLYKQK RRIVKWRPQR ISETPRRSPR LAHLKNSCGS TESALKEKPE VLESSLSSTT DRVEDRTGQA HLLYEKPDRV SKGDNQHAIG ILGLFLIRTY ICLLTPYTAV KPICVFVGSL SLDFKRLKKT LCESVLSEKP QHHQENEEKI DQGNNGEIFE EQVDRNAAET SESFMGRDCI DSSPPTKSEV SSMRINELCL TWKPSVHTNS FENVLLHIQC NNFTKTITHV QGIIRGSPSD LHCSAIIEAV VQKEILKWDS CLQDVDAQRV VIALLEHAKK IKEIHNFNME SRKEEFSTKL QDQLKWQLKE LEGVCTSLEF DYKKATCDSN IAVSTSQEQK KKLQALQYEI KGLQQSMMME DEIQKLVRQV AEHESLVQKS LMERVRVKTV LKSYAQILVE VKERLASNEL GLIDVDALVK IEMDNLRKEI EISKGRLLNI IFK // ID M0WIT8_HORVV Unreviewed; 836 AA. AC M0WIT8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_51932.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_51932.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_51932.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_51932.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_51932.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_51932.2; -. DR EnsemblPlants; MLOC_51932.2; MLOC_51932.2; MLOC_51932. DR Gramene; MLOC_51932.2; MLOC_51932.2; MLOC_51932. DR InParanoid; M0WIT8; -. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WIT8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 737 821 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 836 AA; 92949 MW; AEFA0C1D334A0EF8 CRC64; MSSSSGASLG GQPPPPPPAA PPEEEKKNLN SELWHACAGP LVCLPTLGTR VVYFPQGHSE QVAASTNKEV EGHIPNYPNL PPQLICQLHD VTMHADVETD EVYAQMTLQP LNPQEQNDAY LPAEMGIMSK QPTNYFCKTL TASDTSTHGG FSVPRRAAER VFPPLDFTQQ PPAQELIARD IHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL MWLRGVAGDG GYQSMNFQSP GIGSWGQQRL HPSLLSSDHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQAVSAE SQNIQTMLNS SAIQHQLQQL QQMQQVQQAQ QVQQAHIDQK QKIQSDQSYH VPTSASLPSP TSLPSHLREK FGFSDPNVNS SSFTTSSSSD NMLESNFLQG NSKAVDLSRF NQPVASDQQQ QQQQQQQQQQ QAWKQKFMGS QSLSFGGSGL LSSPTSKDGS LESKIGSDVQ NQSLFSPQVD SSSLLYNMVP NMASNVADNS MSTIPSGSTY LQSPMYGCLD DSSGIFQNTG ENDPTSRTFV KVYKSGSVGR SLDITRFSNY AELREELGQM FGIRGQLDDP DRSGWQLVFV DRENDVLLLG DDPWESFVNS VWYIKILSPE DVHKLGKQGN DPRYLS // ID M0WRM3_HORVV Unreviewed; 677 AA. AC M0WRM3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54060.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54060.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54060.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54060.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54060.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54060.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54060.1; MLOC_54060.1; MLOC_54060. DR EnsemblPlants; MLOC_54060.3; MLOC_54060.3; MLOC_54060. DR EnsemblPlants; MLOC_54060.4; MLOC_54060.4; MLOC_54060. DR Gramene; MLOC_54060.1; MLOC_54060.1; MLOC_54060. DR Gramene; MLOC_54060.3; MLOC_54060.3; MLOC_54060. DR Gramene; MLOC_54060.4; MLOC_54060.4; MLOC_54060. DR OMA; DICIFEI; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WRM3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 404 500 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 571 669 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 404 500 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 571 669 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 677 AA; 78056 MW; 0ED4692F1408F1E7 CRC64; MVPDQDHEKG NRSGHNISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ KFVENFKGRI SEAIKLEAPD GNIYNVQAIK DLNKIILGSG WAVFVSFYEV KEGYFLVFRY IGDSHFKVLI FDFENCCEKE VFHALMNCGP NAQEKDAHLD RSPLSERRCQ NGGSSNGEPH PRCEHCDVHF YWHHMDDMQK HFLRLMFGNF HQEISIPEKF VKNFRGRISE VMKLEAPDGN IYNIKVTKDL NKIVLRSGWA AFATAYELKE YDLLVFRYIG ASHFKVVIFD PSGCEKQLFH IVMNHAPNVQ KRGISDDRSF LRETRRLDCE SHDSNSRKTK KMTPLDSPSP RSAEGVTSPE DTMNSGGLWE TTEARYVLAI GCNLTTGQKA EIDALVKKVR PVIPFYITAM NKTSMARSLV ICKDYAAKYL PHEDQFITLC HPSKSSTWID HLKVITDGSC MLSAGWSCFV LHNELRESDV CVFEVSQSTG EMTMVVHSLE RGHHLQDEEP ESQNKCNYPV KSKAIMEESD EEYAESKSNY YYSKYAKGLT GEEQEDIFRS VLIQQGNPVY IAVLQKNHVS RKPNLLFIPK EFAAKHLAAR SHDIMLLRPN GKKKWRVWYY YHSTFRGFNG TPWTKFVCDN ELREGYICVF ELIKGVHKAT MFVHVFTKVD GRLVLLD // ID M0WRM4_HORVV Unreviewed; 517 AA. AC M0WRM4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54060.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54060.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54060.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54060.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54060.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54060.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54060.2; MLOC_54060.2; MLOC_54060. DR EnsemblPlants; MLOC_54060.5; MLOC_54060.5; MLOC_54060. DR Gramene; MLOC_54060.2; MLOC_54060.2; MLOC_54060. DR Gramene; MLOC_54060.5; MLOC_54060.5; MLOC_54060. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WRM4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 404 500 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 404 500 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 517 AA; 59392 MW; E4B49C69E95C39E1 CRC64; MVPDQDHEKG NRSGHNISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ KFVENFKGRI SEAIKLEAPD GNIYNVQAIK DLNKIILGSG WAVFVSFYEV KEGYFLVFRY IGDSHFKVLI FDFENCCEKE VFHALMNCGP NAQEKDAHLD RSPLSERRCQ NGGSSNGEPH PRCEHCDVHF YWHHMDDMQK HFLRLMFGNF HQEISIPEKF VKNFRGRISE VMKLEAPDGN IYNIKVTKDL NKIVLRSGWA AFATAYELKE YDLLVFRYIG ASHFKVVIFD PSGCEKQLFH IVMNHAPNVQ KRGISDDRSF LRETRRLDCE SHDSNSRKTK KMTPLDSPSP RSAEGVTSPE DTMNSGGLWE TTEARYVLAI GCNLTTGQKA EIDALVKKVR PVIPFYITAM NKTSMARSLV ICKDYAAKYL PHEDQFITLC HPSKSSTWID HLKVITDGSC MLSAGWSCFV LHNELRESDV CVFEVSQSTG EMTMVVHSLE RGHHLQGEYW THLCLHI // ID M0WRM5_HORVV Unreviewed; 376 AA. AC M0WRM5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54060.6}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54060.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54060.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54060.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54060.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54060.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54060.6; MLOC_54060.6; MLOC_54060. DR Gramene; MLOC_54060.6; MLOC_54060.6; MLOC_54060. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WRM5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 376 AA; 43658 MW; B1CF12F515228E38 CRC64; MVPDQDHEKG NRSGHNISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ KFVENFKGRI SEAIKLEAPD GNIYNVQAIK DLNKIILGSG WAVFVSFYEV KEGYFLVFRY IGDSHFKVLI FDFENCCEKE VFHALMNCGP NAQEKDAHLD RSPLSERRCQ NGGSSNGEPH PRCEHCDVHF YWHHMDDMQK HFLRLMFGNF HQEISIPEKF VKNFRGRISE VMKLEAPDGN IYNIKVTKDL NKIVLRSGWA AFATAYELKE YDLLVFRYIG ASHFKVVIFD PSGCEKQLFH IVMNHAPNVQ KRGISDDRSF LRETRRLDCE SHDSNSRKTK KMTPLDSPSP RSGKKIEGLH VHFPCYPFCS YSLISS // ID M0WRM6_HORVV Unreviewed; 589 AA. AC M0WRM6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54060.7}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54060.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54060.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54060.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54060.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54060.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54060.7; MLOC_54060.7; MLOC_54060. DR Gramene; MLOC_54060.7; MLOC_54060.7; MLOC_54060. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WRM6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 404 500 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 404 500 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 589 AA; 67633 MW; 3A76A3DC68AEAB98 CRC64; MVPDQDHEKG NRSGHNISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ KFVENFKGRI SEAIKLEAPD GNIYNVQAIK DLNKIILGSG WAVFVSFYEV KEGYFLVFRY IGDSHFKVLI FDFENCCEKE VFHALMNCGP NAQEKDAHLD RSPLSERRCQ NGGSSNGEPH PRCEHCDVHF YWHHMDDMQK HFLRLMFGNF HQEISIPEKF VKNFRGRISE VMKLEAPDGN IYNIKVTKDL NKIVLRSGWA AFATAYELKE YDLLVFRYIG ASHFKVVIFD PSGCEKQLFH IVMNHAPNVQ KRGISDDRSF LRETRRLDCE SHDSNSRKTK KMTPLDSPSP RSAEGVTSPE DTMNSGGLWE TTEARYVLAI GCNLTTGQKA EIDALVKKVR PVIPFYITAM NKTSMARSLV ICKDYAAKYL PHEDQFITLC HPSKSSTWID HLKVITDGSC MLSAGWSCFV LHNELRESDV CVFEVSQSTG EMTMVVHSLE RGHHLQDEEP ESQNKCNYPV KSKAIMEESD EEYAESKSNY YYSKYAKGLT GEEQEDIFRS VLIQQGNPVY IAVLQKNHVS RKPNLLVIH // ID M0WUK4_HORVV Unreviewed; 316 AA. AC M0WUK4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54810.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54810.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54810.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54810.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54810.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54810.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54810.1; MLOC_54810.1; MLOC_54810. DR Gramene; MLOC_54810.1; MLOC_54810.1; MLOC_54810. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WUK4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 262 316 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 262 316 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 36479 MW; 6CF99B630C935550 CRC64; MKINAVVKKI KPKFKMLVVQ MKKSNIRRYT LEIPKDYALK HFPCEDTSIT LQLPRKNKNW KCKLYVRPSG VAGAGRCSLY VGKFVHDTHV REGDIYLFEP MTNVKQRRYV MTAHPLHEAC SDHSAGGRTN IGSNHRRTCA KMGDVKDKTP TDGEEYSSKH EELEVSQDSE ETLFMLDDGA YLTPAQEMKS LEKVEEIKFK PPFYVVIMSK STVCQRGSQN NPMLRFGSQY TAKYFGEKFA VSHDRGKHSG IYLLLRLEGK IRSWPTKLQH SSRGSKVLKG WPSFARDNRL REGDLCLFKL MKNEEPLMMM VYIVRR // ID M0WUK5_HORVV Unreviewed; 497 AA. AC M0WUK5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54810.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54810.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54810.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54810.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54810.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54810.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54810.2; MLOC_54810.2; MLOC_54810. DR Gramene; MLOC_54810.2; MLOC_54810.2; MLOC_54810. DR InParanoid; M0WUK5; -. DR OMA; QHTTHAM; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WUK5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 443 497 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 443 497 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 497 AA; 57294 MW; 082E48BBB65C3FC8 CRC64; MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTILQ GVSKMSNPCD SDGSQNERSY SSEELSEDSL SVDNSVESAN LKKLSNNYAL SSHCRLTKAQ KMKINAVVKK IKPKFKMLVV QMKKSNIRRY TLEIPKDYAL KHFPCEDTSI TLQLPRKNKN WKCKLYVRPS GVAGAGRCSL YVGKFVHDTH VREGDIYLFE PMTNVKQRRY VMTAHPLHEA CSDHSAGGRT NIGSNHRRTC AKMGDVKDKT PTDGEEYSSK HEELEVSQDS EETLFMLDDG AYLTPAQEMK SLEKVEEIKF KPPFYVVIMS KSTVCQRGSQ NNPMLRFGSQ YTAKYFGEKF AVSHDRGKHS GIYLLLRLEG KIRSWPTKLQ HSSRGSKVLK GWPSFARDNR LREGDLCLFK LMKNEEPLMM MVYIVRR // ID M0WUK8_HORVV Unreviewed; 267 AA. AC M0WUK8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54810.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54810.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54810.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54810.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54810.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54810.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54810.5; MLOC_54810.5; MLOC_54810. DR Gramene; MLOC_54810.5; MLOC_54810.5; MLOC_54810. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WUK8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 31002 MW; 90D254166B87FA8E CRC64; MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTTSG SSSASGNTLG VSKMSNPCDS DGSQNERSYS SEELSEDSLS VDNSVESANL KKLSNNYALS SHCRLTKAQK MKINAVVKKI KPKFKMLVVQ MKKSNIRRYT LVCKFYHLYI FYEKGSLFIV ILFKSVRILV LNQNSEQYFY HEIHMHY // ID M0WUL0_HORVV Unreviewed; 123 AA. AC M0WUL0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54810.7}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54810.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54810.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54810.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54810.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54810.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54810.7; MLOC_54810.7; MLOC_54810. DR Gramene; MLOC_54810.7; MLOC_54810.7; MLOC_54810. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WUL0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 123 AA; 14667 MW; 0CE61D2E939775C4 CRC64; MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTRRI QDE // ID M0WUL1_HORVV Unreviewed; 132 AA. AC M0WUL1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_54810.8}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_54810.8, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_54810.8} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_54810.8}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_54810.8} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_54810.8}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_54810.8; MLOC_54810.8; MLOC_54810. DR Gramene; MLOC_54810.8; MLOC_54810.8; MLOC_54810. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WUL1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 132 AA; 15658 MW; EA225493F6E6BDA4 CRC64; MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTSTR FFVFLSLCDC RL // ID M0WW39_HORVV Unreviewed; 320 AA. AC M0WW39; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5512.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5512.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5512.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5512.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5512.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5512.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5512.1; MLOC_5512.1; MLOC_5512. DR EnsemblPlants; MLOC_5512.2; MLOC_5512.2; MLOC_5512. DR Gramene; MLOC_5512.1; MLOC_5512.1; MLOC_5512. DR Gramene; MLOC_5512.2; MLOC_5512.2; MLOC_5512. DR OMA; CIDDNTS; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 103 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 103 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 34832 MW; 24330C135CBED28A CRC64; MASGKPTNPG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEI DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV GKLNRLVVPK QHAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYRKM NRDDEAADAA ISEENETGHV AVKLFGVDIA GGGMAGSSGG // ID M0WWZ9_HORVV Unreviewed; 957 AA. AC M0WWZ9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_55345.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_55345.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_55345.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_55345.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_55345.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_55345.6; -. DR EnsemblPlants; MLOC_55345.6; MLOC_55345.6; MLOC_55345. DR Gramene; MLOC_55345.6; MLOC_55345.6; MLOC_55345. DR InParanoid; M0WWZ9; -. DR OMA; DYDPMRW; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WWZ9; baseline and differential. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 853 937 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 957 AA; 105594 MW; C9F638FEF9C237D7 CRC64; MAASQSQEKQ HLPAFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL QPVNSETDVF PIQSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLVYD YSMQPPNQEL IVRDLHDNMW TFRHIYRGQP KRHLLTTGWS LFVGAKRLKA GDSVLFIRDE KSQLLVGVRR ATNQQTALSS SVLSTDSMHI GVLAAAAHAA SSGSSFTIYY NPRTSPSPFV VPMTRYNKAI YIQQSVGMRI AMMSETEESG KRRHTGTIVG VSDSDPMRWP NSKWRNLQVE WDEHEHGYGE RPERVSIWDI ETPENTIVLP SASLNSKRQC LPGYGVPGLE VASANMSPFQ RAPGNPYGNL QHMPAVGSEL AMMMFLNQSG QNIGTPLSCH QSSYSSIIQN VKQNYMPPST YGHPIGSIKP ESMPSNEAQQ QQLHAPKMQR GDSESCEVQP ATDSVSASEL HAAGREPRNT DKYPTQSISE QNCKGEPRVK PRRSKKGSSR KTISENSELS SAPSRVCDDQ QNVLEAKLVG CGTEQVNCGN NEGSSAALTH GDFAGQLQCQ QVEQNELVSP PKLESSISPD GGKSVNSFPN QASFSQFFDG LDWMVQPPYY QDSNGMQSIS ASENIFSPSA NMASTINTDT LETFQNSCLS DCFPNSIQDF IGSPDLHSLT FLSPEMQNLD VHNDGSNVPS TSNSYVQMSF SEDDSGNHME SIQRGMNNTS CSQPQATEGF NLGMYSKLPS LKESQVLSLP EIHNSSRGTS SCSMDAAEYS IDRSAKPLKP PVRTYTKVQK LGSVGRSIDV TRYRDYRELR SAIASMFGLQ GKLEHPASSD WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGMQVLN DCIQADQ // ID M0WX00_HORVV Unreviewed; 955 AA. AC M0WX00; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_55345.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_55345.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_55345.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_55345.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_55345.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_55345.10; MLOC_55345.10; MLOC_55345. DR EnsemblPlants; MLOC_55345.7; MLOC_55345.7; MLOC_55345. DR Gramene; MLOC_55345.10; MLOC_55345.10; MLOC_55345. DR Gramene; MLOC_55345.7; MLOC_55345.7; MLOC_55345. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WX00; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 851 935 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105332 MW; CB56728C147C852C CRC64; MAASQSQEKQ HLPAFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL QPVNSETDVF PIQSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS MQPPNQELIV RDLHDNMWTF RHIYRGQPKR HLLTTGWSLF VGAKRLKAGD SVLFIRDEKS QLLVGVRRAT NQQTALSSSV LSTDSMHIGV LAAAAHAASS GSSFTIYYNP RTSPSPFVVP MTRYNKAIYI QQSVGMRIAM MSETEESGKR RHTGTIVGVS DSDPMRWPNS KWRNLQVEWD EHEHGYGERP ERVSIWDIET PENTIVLPSA SLNSKRQCLP GYGVPGLEVA SANMSPFQRA PGNPYGNLQH MPAVGSELAM MMFLNQSGQN IGTPLSCHQS SYSSIIQNVK QNYMPPSTYG HPIGSIKPES MPSNEAQQQQ LHAPKMQRGD SESCEVQPAT DSVSASELHA AGREPRNTDK YPTQSISEQN CKGEPRVKPR RSKKGSSRKT ISENSELSSA PSRVCDDQQN VLEAKLVGCG TEQVNCGNNE GSSAALTHGD FAGQLQCQQV EQNELVSPPK LESSISPDGG KSVNSFPNQA SFSQFFDGLD WMVQPPYYQD SNGMQSISAS ENIFSPSANM ASTINTDTLE TFQNSCLSDC FPNSIQDFIG SPDLHSLTFL SPEMQNLDVH NDGSNVPSTS NSYVQMSFSE DDSGNHMESI QRGMNNTSCS QPQATEGFNL GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSID RSAKPLKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ // ID M0WX01_HORVV Unreviewed; 954 AA. AC M0WX01; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_55345.8, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_55345.8} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_55345.8}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_55345.8} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_55345.8}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_55345.8; MLOC_55345.8; MLOC_55345. DR EnsemblPlants; MLOC_55345.9; MLOC_55345.9; MLOC_55345. DR Gramene; MLOC_55345.8; MLOC_55345.8; MLOC_55345. DR Gramene; MLOC_55345.9; MLOC_55345.9; MLOC_55345. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0WX01; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 850 934 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 954 AA; 105275 MW; 11460F6FBEA378A7 CRC64; MAASQSQEKQ HLPAFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL QPVNSETDVF PIQSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS MQPPNQELIV RDLHDNMWTF RHIYRQPKRH LLTTGWSLFV GAKRLKAGDS VLFIRDEKSQ LLVGVRRATN QQTALSSSVL STDSMHIGVL AAAAHAASSG SSFTIYYNPR TSPSPFVVPM TRYNKAIYIQ QSVGMRIAMM SETEESGKRR HTGTIVGVSD SDPMRWPNSK WRNLQVEWDE HEHGYGERPE RVSIWDIETP ENTIVLPSAS LNSKRQCLPG YGVPGLEVAS ANMSPFQRAP GNPYGNLQHM PAVGSELAMM MFLNQSGQNI GTPLSCHQSS YSSIIQNVKQ NYMPPSTYGH PIGSIKPESM PSNEAQQQQL HAPKMQRGDS ESCEVQPATD SVSASELHAA GREPRNTDKY PTQSISEQNC KGEPRVKPRR SKKGSSRKTI SENSELSSAP SRVCDDQQNV LEAKLVGCGT EQVNCGNNEG SSAALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS FSQFFDGLDW MVQPPYYQDS NGMQSISASE NIFSPSANMA STINTDTLET FQNSCLSDCF PNSIQDFIGS PDLHSLTFLS PEMQNLDVHN DGSNVPSTSN SYVQMSFSED DSGNHMESIQ RGMNNTSCSQ PQATEGFNLG MYSKLPSLKE SQVLSLPEIH NSSRGTSSCS MDAAEYSIDR SAKPLKPPVR TYTKVQKLGS VGRSIDVTRY RDYRELRSAI ASMFGLQGKL EHPASSDWKL VYVDYENDVL LVGDDPWEEF INCVRCIRIL SPSEVQQMSE NGMQVLNDCI QADQ // ID M0X097_HORVV Unreviewed; 232 AA. AC M0X097; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5600.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5600.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5600.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5600.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5600.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5600.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5600.2; MLOC_5600.2; MLOC_5600. DR Gramene; MLOC_5600.2; MLOC_5600.2; MLOC_5600. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X097; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 232 AA; 26284 MW; 7832F9057A60FEAB CRC64; MSNSCQCCKR YWTHLHGKVR CFVTHMDRHS RHRMVIPERF VNYFAWKLSA AIELEAPNGN VYDVGITERR NKTLLRSGWE AFVDDNHIVE GDSLMFRYCG NCCFKVVVFD SSGCEKVVSC ARSRRQININ DQEPSTNSAD ISTSFSDGST HSSARGRSVD WQSGTLGHCR KRARTDAISS PSDDFSAEDS PYEHESSESD DQMLATPLYV LSGKCYVTEE DEANIVELVR EI // ID M0X098_HORVV Unreviewed; 231 AA. AC M0X098; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5600.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5600.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5600.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5600.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5600.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5600.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5600.3; MLOC_5600.3; MLOC_5600. DR Gramene; MLOC_5600.3; MLOC_5600.3; MLOC_5600. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X098; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 231 AA; 26213 MW; 2307A7A17B741B32 CRC64; MSNSCQCCKR YWTHLHGKVR CFVTHMDRHS RHRMVIPERF VNYFAWKLSA AIELEAPNGN VYDVGITERR NKTLLRSGWE AFVDDNHIVE GDSLMFRYCG NCCFKVVVFD SSGCEKVVSC ARSRRQININ DQEPSTNSAD ISTSFSDGST HSSARGRSVD WQSGTLGHCR KRARTDAISS PSDDFSEDSP YEHESSESDD QMLATPLYVL SGKCYVTEED EANIVELVRE I // ID M0X099_HORVV Unreviewed; 244 AA. AC M0X099; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5600.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5600.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5600.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5600.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5600.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5600.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5600.4; MLOC_5600.4; MLOC_5600. DR Gramene; MLOC_5600.4; MLOC_5600.4; MLOC_5600. DR InParanoid; M0X099; -. DR OMA; RRQININ; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X099; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 244 AA; 27613 MW; 80085879832F1B9F CRC64; MIHVSPRNHR TLIGGQMSNS CQCCKRYWTH LHGKVRCFVT HMDRHSRHRM VIPERFVNYF AWKLSAAIEL EAPNGNVYDV GITERRNKTL LRSGWEAFVD DNHIVEGDSL MFRYCGNCCF KVVVFDSSGC EKVVSCARSR RQININDQEP STNSADISTS FSDGSTHSSA RGRSVDWQSG TLGHCRKRAR TDAISSPSDD FSEDSPYEHE SSESDDQMLA TPLYVLSGKC YVTEEDEANI VELV // ID M0X0A0_HORVV Unreviewed; 187 AA. AC M0X0A0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5600.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5600.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5600.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5600.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5600.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5600.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5600.1; MLOC_5600.1; MLOC_5600. DR EnsemblPlants; MLOC_5600.5; MLOC_5600.5; MLOC_5600. DR Gramene; MLOC_5600.1; MLOC_5600.1; MLOC_5600. DR Gramene; MLOC_5600.5; MLOC_5600.5; MLOC_5600. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X0A0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 187 AA; 21154 MW; 8A9EA3CE96DD8FC1 CRC64; MSNSCQCCKR YWTHLHGKVR CFVTHMDRHS RHRMVIPERF VNYFAWKLSA AIELEAPNGN VYDVGITERR NKTLLRSGWE AFVDDNHIVE GDSLMFRYCG NCCFKVVVFD SSGCEKVVSC ARSRRQININ DQEPSTNSAD ISTSFSDGST HSSARGRSVD WQSGTLGHCR KRARTDAISS PSDDFSG // ID M0X0A1_HORVV Unreviewed; 222 AA. AC M0X0A1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_5600.6}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_5600.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_5600.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_5600.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_5600.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_5600.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_5600.6; MLOC_5600.6; MLOC_5600. DR EnsemblPlants; MLOC_5600.7; MLOC_5600.7; MLOC_5600. DR Gramene; MLOC_5600.6; MLOC_5600.6; MLOC_5600. DR Gramene; MLOC_5600.7; MLOC_5600.7; MLOC_5600. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X0A1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 222 AA; 25147 MW; 4A734BA3E8F0B568 CRC64; MSNSCQCCKR YWTHLHGKVR CFVTHMDRHS RHRMVIPERF VNYFAWKLSA AIELEAPNGN VYDVGITERR NKTLLRSGWE AFVDDNHIVE GDSLMFRYCG NCCFKVVVFD SSGCEKVVSC ARSRRQININ DQEPSTNSAD ISTSFSDGST HSSARGRSVD WQSGTLGHCR KRARTDAISS PSDDFSEDSP YEHESSESDD QMLATPLYVL SGKCYVTEED EA // ID M0X2M6_HORVV Unreviewed; 274 AA. AC M0X2M6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_56530.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_56530.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_56530.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_56530.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_56530.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_56530.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_56530.1; MLOC_56530.1; MLOC_56530. DR Gramene; MLOC_56530.1; MLOC_56530.1; MLOC_56530. DR InParanoid; M0X2M6; -. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X2M6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31503 MW; ADF7EE30A41B1370 CRC64; MAMHPLCQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDFP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDV VHFERVRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNS GEQQPWSPMC YSTSGSYPTS PANSYAYRRS VEQDHNDMLS LTPFSGEFLQ ASHRERQTPR AARHRRRRRD VSGCLASTST AVRSQRQKQQ RQCTAIPTRT PTLQCPRCQL TGEY // ID M0X2M7_HORVV Unreviewed; 266 AA. AC M0X2M7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_56530.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_56530.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_56530.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_56530.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_56530.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_56530.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_56530.2; MLOC_56530.2; MLOC_56530. DR Gramene; MLOC_56530.2; MLOC_56530.2; MLOC_56530. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X2M7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 266 AA; 30067 MW; B02CE5ED6628BF7A CRC64; MAMHPLCQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDFP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDV VHFERVRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNS GEQQPWSPMC YSTSGSYPTS PANSYAYRRS VEQDHNDMLH AGESPREADA KSSTASAPPS RRLRLFGVNL DCGPEPEAEA TTPMYGYTHQ NPYAPVPTVP TYWGSS // ID M0X2M8_HORVV Unreviewed; 263 AA. AC M0X2M8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_56530.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_56530.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_56530.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_56530.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_56530.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_56530.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_56530.3; MLOC_56530.3; MLOC_56530. DR Gramene; MLOC_56530.3; MLOC_56530.3; MLOC_56530. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0X2M8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 263 AA; 29835 MW; 0D6628BF7A947E5D CRC64; MAMHPLCQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDFP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDV VHFERVRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNS GEQQPWSPMC YSTSGSYPTS PANSYAYRRS VEQDHNDMLH AGESPREADA KSSTASAPPS RRLRLFGVNL DCGPEPEAEA TTPMYGYTHQ NPYAPVPTVP TYW // ID M0XAA8_HORVV Unreviewed; 938 AA. AC M0XAA8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_58330.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_58330.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_58330.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_58330.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_58330.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_58330.2; -. DR EnsemblPlants; MLOC_58330.2; MLOC_58330.2; MLOC_58330. DR Gramene; MLOC_58330.2; MLOC_58330.2; MLOC_58330. DR InParanoid; M0XAA8; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XAA8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 799 883 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 938 AA; 103351 MW; 84B8E6043910E091 CRC64; MRLSSPAGAV LPAQSPASPE AAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPVIHIYHVP CASFLFNPVS KGVTSACFSF QQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTMQPP AQELFAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRAARPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPTPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GAGMNPWMQP RLDASLLGLQ PDIYQTMAAA AFQDPTKVSP TMLQFQQPQN MVGRATPLLQ SQILQQMQPQ FQQQSYLQNI NGATIQGQAQ SEFLQQQLQR CQSFNEQKPQ LLQQQESNQQ QSQGMQVPQH QHMQQQKNMA NYQSAYSQLS PGPQSSPTAL QTVLPFSQPQ SFSDTKMSSL SPSGAPTMHN TLGPFSSETA SHLSMSRPTA VPVAGSWSSK RVAVESLLPS RPQATPHMEQ LSTTPPSIPQ SSALAPLPGR GCLVDQDGNS DPQNHLLFGV NIDSHSLLMQ GGLHDENDST AIPYSTSNFL SPSQHDFSLD QTLNSSGCLD ESGYVPCSHT PDQVNQPPAT FVKVYKSGTY GRSLDITKFS NYHELRRELG RLFGLEGQLE DPMRSGWQLV FVDREEDVLL VGDDPWQEFV NSVSCIKILS PQEVQQMGKQ GLELLSSAPG KRLGGGGGSS SCDDYASRQE SRSLSTGIAS VGSVEVEF // ID M0XAA9_HORVV Unreviewed; 909 AA. AC M0XAA9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_58330.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_58330.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_58330.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_58330.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_58330.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_58330.1; MLOC_58330.1; MLOC_58330. DR EnsemblPlants; MLOC_58330.3; MLOC_58330.3; MLOC_58330. DR Gramene; MLOC_58330.1; MLOC_58330.1; MLOC_58330. DR Gramene; MLOC_58330.3; MLOC_58330.3; MLOC_58330. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XAA9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 770 854 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 909 AA; 100170 MW; 2A0A5DE41E7CF4DA CRC64; MRLSSPAGAV LPAQSPASPE AAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPQELKDPYL PAELGTANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTMQP PAQELFAKDL HGNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRAARPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PCEFVIPLAK YVKAVYHTRI SVGMRFRMLF ETEESSVRRY MGTITGISDL DAVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPTPFPLR LKRPWPTGLP SLHGGKDDDL TSSLMWLRDS ANPGFQSLNF GGAGMNPWMQ PRLDASLLGL QPDIYQTMAA AAFQDPTKVS PTMLQFQQPQ NMVGRATPLL QSQILQQMQP QFQQQSYLQN INGATIQGQA QSEFLQQQLQ RCQSFNEQKP QLLQQQESNQ QQSQGMQVPQ HQHMQQQKNM ANYQSAYSQL SPGPQSSPTA LQTVLPFSQP QSFSDTKMSS LSPSGAPTMH NTLGPFSSET ASHLSMSRPT AVPVAGSWSS KRVAVESLLP SRPQATPHME QLSTTPPSIP QSSALAPLPG RGCLVDQDGN SDPQNHLLFG VNIDSHSLLM QGGLHDENDS TAIPYSTSNF LSPSQHDFSL DQTLNSSGCL DESGYVPCSH TPDQVNQPPA TFVKVYKSGT YGRSLDITKF SNYHELRREL GRLFGLEGQL EDPMRSGWQL VFVDREEDVL LVGDDPWQEF VNSVSCIKIL SPQEVQQMGK QGLELLSSAP GKRLGGGGGS SSCDDYASRQ ESRSLSTGIA SVGSVEVEF // ID M0XAB1_HORVV Unreviewed; 304 AA. AC M0XAB1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_58330.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_58330.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_58330.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_58330.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_58330.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_58330.5; MLOC_58330.5; MLOC_58330. DR Gramene; MLOC_58330.5; MLOC_58330.5; MLOC_58330. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XAB1; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 304 AA; 34369 MW; 6C69088DA56A3512 CRC64; MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTMQPP AQELFAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRAARPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPTPFPLRL KRPWPTGLPS LHGT // ID M0XAB3_HORVV Unreviewed; 710 AA. AC M0XAB3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_58330.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_58330.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_58330.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_58330.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_58330.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_58330.7; MLOC_58330.7; MLOC_58330. DR Gramene; MLOC_58330.7; MLOC_58330.7; MLOC_58330. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XAB3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 710 AA; 78859 MW; 76038CD82733367D CRC64; MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTMQPP AQELFAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRAARPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPTPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GAGMNPWMQP RLDASLLGLQ PDIYQTMAAA AFQDPTKVSP TMLQFQQPQN MVGRATPLLQ SQILQQMQPQ FQQQSYLQNI NGATIQGQAQ SEFLQQQLQR CQSFNEQKPQ LLQQQESNQQ QSQGMQVPQH QHMQQQKNMA NYQSAYSQLS PGPQSSPTAL QTVLPFSQPQ SFSDTKMSSL SPSGAPTMHN TLGPFSSETA SHLSMSRPTA VPVAGSWSSK RVAVESLLPS RPQATPHMEQ LSTTPPSIPQ SSALAPLPGR GCLVDQDGNS DPQNHLLFGV NIDSHSLLMQ GGLHDENDST AIPYSTSNFL SPSQHDFSLD QTLNSSGCLD ESGYVPCSHT PDQVNQPPAT FVKVYKSGTY GRSLDITKFS NYHELRRELG // ID M0XET3_HORVV Unreviewed; 225 AA. AC M0XET3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.1; MLOC_59439.1; MLOC_59439. DR Gramene; MLOC_59439.1; MLOC_59439.1; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XET3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 25355 MW; DF1FA01494FFD214 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDASGR SYECQ // ID M0XET4_HORVV Unreviewed; 255 AA. AC M0XET4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.10}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.10, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.10} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.10}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.10} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.10}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.10; MLOC_59439.10; MLOC_59439. DR Gramene; MLOC_59439.10; MLOC_59439.10; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XET4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 20 {ECO:0000256|SAM:SignalP}. FT CHAIN 21 255 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004009114. FT DOMAIN 43 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 190 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 190 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 255 AA; 29413 MW; CD44012FF0A8928A CRC64; QLKHILAEFC ILFICLFVYG ITLCPICDQT ITKECAAAHF PHESASVILQ RPGESKKWYP RFCKGNGGSI HKIRGEWSDF VCDNHVEEAD ICIFVSTKGG GRFTFTVHLI HSESKAHACP FVPPYILPKT RFLSPLQKII VEDKAQAIQL EAHFYVAIMN KINVGVKGHY NLEFGAKYAA VYLPKKEQTI LLQRTGKEWQ TQMRIRRGRR RFLEKGWCEF ATDNRLQVGD LCLFELKRNR RKLTMIVHII SRDQC // ID M0XET5_HORVV Unreviewed; 239 AA. AC M0XET5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.11}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.11, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.11} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.11}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.11} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.11}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.11; MLOC_59439.11; MLOC_59439. DR Gramene; MLOC_59439.11; MLOC_59439.11; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XET5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 174 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 174 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 27616 MW; 99E380C5BA5BF8B4 CRC64; MRKSNVRPLY PSLTITKECA AAHFPHESAS VILQRPGESK KWYPRFCKGN GGSIHKIRGE WSDFVCDNHV EEADICIFVS TKGGGRFTFT VHLIHSESKA HACPFVPPYI LPKTRFLSPL QKIIVEDKAQ AIQLEAHFYV AIMNKINVGV KGHYNLEFGA KYAAVYLPKK EQTILLQRTG KEWQTQMRIR RGRRRFLEKG WCEFATDNRL QVGDLCLFEL KRNRRKLTMI VHIISRDQC // ID M0XET6_HORVV Unreviewed; 83 AA. AC M0XET6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.12}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.12, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.12} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.12}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.12} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.12}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.12; MLOC_59439.12; MLOC_59439. DR Gramene; MLOC_59439.12; MLOC_59439.12; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XET6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 83 AA; 10044 MW; 20A621BE226C9577 CRC64; EFGAKYAAVY LPKKEQTILL QRTGKEWQTQ MRIRRGRRRF LEKGWCEFAT DNRLQVGDLC LFELKRNRRK LTMIVHIISR DQC // ID M0XET7_HORVV Unreviewed; 226 AA. AC M0XET7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.2; MLOC_59439.2; MLOC_59439. DR EnsemblPlants; MLOC_59439.3; MLOC_59439.3; MLOC_59439. DR Gramene; MLOC_59439.2; MLOC_59439.2; MLOC_59439. DR Gramene; MLOC_59439.3; MLOC_59439.3; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XET7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 226 AA; 25484 MW; CDF8F22D87A5A2C4 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSEDSPNE HESSGSDDHT LPKMISTARV KEEQYSDASG RSYECQ // ID M0XET9_HORVV Unreviewed; 234 AA. AC M0XET9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.4; MLOC_59439.4; MLOC_59439. DR Gramene; MLOC_59439.4; MLOC_59439.4; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XET9; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 234 AA; 26197 MW; CD01B119895C25B7 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSEDSPNE HESSGSDDHT LPKMISTARV KEEQYSDASG RSYECQSGSS SYSG // ID M0XEU0_HORVV Unreviewed; 238 AA. AC M0XEU0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.5; MLOC_59439.5; MLOC_59439. DR Gramene; MLOC_59439.5; MLOC_59439.5; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XEU0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 238 AA; 26655 MW; B01860340D01B119 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSEDSPNE HESSGSDDHT LPKMISTARV KEEQYSDASG RSYECQSGSS SYSGSTRN // ID M0XEU1_HORVV Unreviewed; 220 AA. AC M0XEU1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.6}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.6; MLOC_59439.6; MLOC_59439. DR Gramene; MLOC_59439.6; MLOC_59439.6; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XEU1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 220 AA; 24731 MW; 4917A7F1A1D70BE2 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDGMAV // ID M0XEU2_HORVV Unreviewed; 269 AA. AC M0XEU2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.7}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.7; MLOC_59439.7; MLOC_59439. DR Gramene; MLOC_59439.7; MLOC_59439.7; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XEU2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 269 AA; 30394 MW; EAB6E9422BB80A20 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDGPPK DKYVLPSRSN LADAQKEKID RLLQDIQSRT LAFVAIMRKS NVRPLYPSL // ID M0XEU4_HORVV Unreviewed; 294 AA. AC M0XEU4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59439.9}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_59439.9, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_59439.9} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_59439.9}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_59439.9} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_59439.9}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_59439.9; MLOC_59439.9; MLOC_59439. DR Gramene; MLOC_59439.9; MLOC_59439.9; MLOC_59439. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XEU4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 33303 MW; 25FCE31CE2189A91 CRC64; MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDGPPK DKYVLPSRSN LADAQKEKID RLLQDIQSRT LAFVAIMRKS NVRPLYPSLV NFLSSFLAHY NPLWSIELIE VFTS // ID M0XIW9_HORVV Unreviewed; 665 AA. AC M0XIW9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_60460.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_60460.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_60460.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_60460.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_60460.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_60460.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_60460.3; MLOC_60460.3; MLOC_60460. DR Gramene; MLOC_60460.3; MLOC_60460.3; MLOC_60460. DR InParanoid; M0XIW9; -. DR OMA; CIFVPEK; -. DR OrthoDB; EOG093601YU; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XIW9; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 536 636 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 536 636 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 74347 MW; 2A6528AD13744035 CRC64; MRASKGSGRR RAAGGGRKLI LMADEAAAAS SIQAAAALAS LHLPPPALPE TDNQDGNYFG RGARIKRKAK RKWGFLGSDA GAVETKNRRS AMRGGFGSLD EVLHGEVGIR SRFSAGRIRE IMRGLTPRQQ GYVAKYGFEH FNRIGAFSVH EPLTEWIMGK INPPFSEFRI NADKTIVFTK PLVQKILGVP TGGRPFVLHG QKSDKIKELR DLYLNYGLRA TIPHCVSLLK NNEDEESFMR TFLLIALAAV LTPTTGNTID LDYLWAFEDM SKVQDLDWAG HITEHLMDEV QKFQYKAREE KMRDIWVGGC LPLLTIAYMD HLDLPRGRIV DREINYSLPR ICHVSKDDFQ FAAIADLHRQ HFNFATFGIL PFRDRTPYTD NPVTETEVAE DAPNIVSKDQ ALSGQWELIE VHDEKIDEFV KEAQPEILGF AEASFDHSPF GRTDIGSNQG TKKAARCERG SSSHCKNTAK VAVTPCSSEK SEEDNAREYE SSESDDHPTP PEADYVVIFR SCLSGPQMER VNTLIQEIKP ETTVFVATMR KCDVQLPSPL LIISKEQALA AAAHFPHENG VVTLEMPGKD EKWRPRFFIE KDMCMLAGNW LDFVCDNHVQ AGDICIFVPV KGGERYTFTV HVVRAEATHH RGVKRIRSTH DSPVSGKGMA NPDVI // ID M0XQV3_HORVV Unreviewed; 494 AA. AC M0XQV3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_62237.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_62237.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_62237.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_62237.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_62237.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_62237.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_62237.1; -. DR EnsemblPlants; MLOC_62237.1; MLOC_62237.1; MLOC_62237. DR Gramene; MLOC_62237.1; MLOC_62237.1; MLOC_62237. DR InParanoid; M0XQV3; -. DR OMA; RETHAND; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XQV3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 386 481 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 386 481 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 494 AA; 54487 MW; F26AC5DDE8B37B9F CRC64; MKRVTEMDAD GSTSKKRSSI LENGMPEASA VACNVAPTSL NMDINAADPP EAVVVPLEEG NRTTRKRVRE TDANDSALRK FLRVRETHAN DSALQKSSRV REIKLESGKG DMDINAADPS QVSAAPLEES NEATVKRVTE MDANGSTSKK RSSILENGMS EASAVTCKVA PTSLKMDLNA ADPPEAVVVP LEEGNRTTRE RVRETDANDS ALRKSLRVRE TDANDSALHK SSRVREIDAN DSALQKSLRV REIDANDSAL QKSLWVRDID ANGSVLQKSS IALDKDKKRC PAASVGTYKS ASTSLDSTED SDSSSSMLEQ SISCIKSELT SPIRLGVSKD AARRGNNSAT GKRQLKVISQ RPRITEIQKD NTLLRAKQFK SKNPFGLQIM KESYVYVGFF LNLPCEFVRE CLPRANRKLK LWNPQGKFWD VNYVFNSKRS VGALSGGWGK FSLDNNLEKF DVCVFELFSK DNIKVYIYRV VPEITPFLPG PGKK // ID M0XQV5_HORVV Unreviewed; 354 AA. AC M0XQV5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_62237.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_62237.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_62237.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_62237.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_62237.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_62237.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_62237.3; MLOC_62237.3; MLOC_62237. DR Gramene; MLOC_62237.3; MLOC_62237.3; MLOC_62237. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XQV5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 246 341 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 246 341 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 39324 MW; C8B9A43E2A2DC5CC CRC64; MDANGSTSKK RSSILENGMS EASAVTCKVA PTSLKMDLNA ADPPEAVVVP LEEGNRTTRE RVRETDANDS ALRKSLRVRE TDANDSALHK SSRVREIDAN DSALQKSLRV REIDANDSAL QKSLWVRDID ANGSVLQKSS IALDKDKKRC PAASVGTYKS ASTSLDSTED SDSSSSMLEQ SISCIKSELT SPIRLGVSKD AARRGNNSAT GKRQLKVISQ RPRITEIQKD NTLLRAKQFK SKNPFGLQIM KESYVYVGFF LNLPCEFVRE CLPRANRKLK LWNPQGKFWD VNYVFNSKRS VGALSGGWGK FSLDNNLEKF DVCVFELFSK DNIKVYIYRV VPEITPFLPG PGKK // ID M0XS12_HORVV Unreviewed; 56 AA. AC M0XS12; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_62500.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_62500.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_62500.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_62500.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_62500.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_62500.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_62500.1; MLOC_62500.1; MLOC_62500. DR Gramene; MLOC_62500.1; MLOC_62500.1; MLOC_62500. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XS12; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 56 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 56 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 56 AA; 6410 MW; EA4B48B6D4E04956 CRC64; MGGSARSWPV AFNIANTYGF LTGKGWKRFC QDNEVEEGDR CTFKVVEKMV WHVVIN // ID M0XS13_HORVV Unreviewed; 268 AA. AC M0XS13; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_62500.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_62500.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_62500.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_62500.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_62500.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_62500.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_62500.2; MLOC_62500.2; MLOC_62500. DR Gramene; MLOC_62500.2; MLOC_62500.2; MLOC_62500. DR InParanoid; M0XS13; -. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XS13; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 174 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 174 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 268 AA; 30000 MW; 45B19B099AF97911 CRC64; MSKTRPRFIK LLRPDDWEKM TIPDEFVQQH LIGAESCPSS QKALIIGPTG KLWPVELDQR QSDVLYGEVW AEFLTAHDLS EGSILLFRYE VNMSFSVQVF LPNGCMKEYP YLADEADGSS PLLPQSDKQL VAPSVSKRSY NKRQVVSGIP ATFPAMKAQK VQSQSKPAGV VGRHSFTKQI TSYSLKSLFA VKLTFCSSIG LLEACTIQLK TSMGGSARSW PVAFNIANTY GFLTGKGWKR FCQDNEVEEG DRCTFKVVEK MVWHVVIN // ID M0XUM2_HORVV Unreviewed; 469 AA. AC M0XUM2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_63193.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_63193.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_63193.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_63193.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_63193.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_63193.1; MLOC_63193.1; MLOC_63193. DR Gramene; MLOC_63193.1; MLOC_63193.1; MLOC_63193. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XUM2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 469 AA; 53450 MW; FA96BAC668F555BF CRC64; MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAR MTLQPVTSYG KEALQLSELA LKQARPQNEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE IQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLWKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NSSMQNIGSS ELSRQLCLQN QLLQQNNMQF NSPKLPQQMQ PNNDLSKAAV PLNQNGMSIK QQEQTQDASN FQRQQQSMN // ID M0XUM3_HORVV Unreviewed; 501 AA. AC M0XUM3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_63193.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_63193.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_63193.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_63193.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_63193.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_63193.2; -. DR EnsemblPlants; MLOC_63193.2; MLOC_63193.2; MLOC_63193. DR Gramene; MLOC_63193.2; MLOC_63193.2; MLOC_63193. DR OMA; NQNGMSI; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XUM3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 501 AA; 57021 MW; A840A763971CCC46 CRC64; MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAR MTLQPVTSYG KEALQLSELA LKQARPQNEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE IQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLWKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NSSMQNIGSS ELSRQLCLQN QLLQQNNMQF NSPKLPQQMQ PNNDLSKAAV PLNQNGMSIK QQEQTQDASN FQRQQQSMNY ALPLSQAQTN LAQAQVVVQN QMQQQQPQPH T // ID M0XUM4_HORVV Unreviewed; 306 AA. AC M0XUM4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_63193.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_63193.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_63193.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_63193.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_63193.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_63193.3; MLOC_63193.3; MLOC_63193. DR EnsemblPlants; MLOC_63193.4; MLOC_63193.4; MLOC_63193. DR Gramene; MLOC_63193.3; MLOC_63193.3; MLOC_63193. DR Gramene; MLOC_63193.4; MLOC_63193.4; MLOC_63193. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XUM4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 71 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34595 MW; 9FC605BEF1AAF9B5 CRC64; MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAR MTLQPVTSYG KEALQLSELA LKQARPQNEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE IQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGSVIRLGSI ILRHPALSAA DPRTFL // ID M0XUY9_HORVV Unreviewed; 308 AA. AC M0XUY9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_63261.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_63261.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_63261.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_63261.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_63261.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_63261.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_63261.1; MLOC_63261.1; MLOC_63261. DR Gramene; MLOC_63261.1; MLOC_63261.1; MLOC_63261. DR InParanoid; M0XUY9; -. DR OMA; WAGMAGS; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR017392; AP2/ERF-transcript_factor. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PIRSF; PIRSF038123; PTI6; 2. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 95 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 95 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 33526 MW; C791626D21D9A482 CRC64; MASSKPTNPE VDNDMECSSP ESGAEDAVES SSPVAAPSSR FKGVVPQPNG RWGAQIYEKH SRVWLGTFGD EEAAACAYDV AALRFRGRDA VTNHQRLPAA EGAGWSSTSE LAFLADHSKA EIVDMLRKHT YDDELRQGLR RGHGRAQPTP AWAREFLFEK ALTPSDVGKL NRLVVPKQHA EKHFPPTTAA AAGSDGKGLL LNFEDGQGKV WRFRYSYWNS SQSYVLTKGW SRFVQEKGLC AGDTVTFSRS AYVMNDTDEQ LFIDYKQSSK NDEAADVATA DENEAGHVAV KLFGVDIGWA GMAGSSGG // ID M0XXL5_HORVV Unreviewed; 891 AA. AC M0XXL5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 2. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_63938.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_63938.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_63938.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_63938.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_63938.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_63938.1; -. DR EnsemblPlants; MLOC_63938.1; MLOC_63938.1; MLOC_63938. DR Gramene; MLOC_63938.1; MLOC_63938.1; MLOC_63938. DR InParanoid; M0XXL5; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XXL5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 757 841 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 891 AA; 98195 MW; 2D6E9BFAC7987B98 CRC64; MERKLSMSEM PQPLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TTISDLDSAR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF ARYSSLMWLG DGDRGAQSLN FQGVGASPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPSQQGH QVIQQSHQEM QQQLSSGCHR ISDVDSSMSG SESASQSQPP FYQQNLLEGN NDPSMHLHNG FRNFSSQDAS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSVQPKHE NVNHQSNISH FAGTLAPQSA RDSSSVQAYV ANVDNHFLSS SFAFQDGMAG ARGGSSSGTV SMAIPLLRYS GEDLPPADTL ATSSCLGESG TFNSLDNMCG VDPSQDGIFV KVCKSGSPGR SLDITKFSSY YELRSELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSPQ EVQRMVRGGE GLLSSAPGAR MAQGDVCDGY SGGHDLQNLT GSMASVPSLD Y // ID M0XZ58_HORVV Unreviewed; 408 AA. AC M0XZ58; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.10}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.10, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.10} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.10}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.10} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.10}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.10; MLOC_64376.10; MLOC_64376. DR Gramene; MLOC_64376.10; MLOC_64376.10; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ58; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 45870 MW; 6F565AA029390E9D CRC64; MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASVQC YLTKAQKVKI AAIIEKIQSK ITVLVVQMKK SNVKRHANLV IRKDYALEHF PREYTIVILQ LPGKNKDWKG TFRIRPSGMS DAGRCNLYLG NFARDNHVRE GDICLFQPMT NVKQRRFLVK VHILHKVSID GTTQSSARKR PDSDGCLKED SSHNYKSANT PAVSYTSKEF SEENPAADEV MELDDLQTLS KDYVLSGKCD LTVAQGAKIN ALVDKIRPQI PVLVVQMKKS SSTNGAIL // ID M0XZ59_HORVV Unreviewed; 219 AA. AC M0XZ59; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.11}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.11, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.11} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.11}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.11} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.11}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.11; MLOC_64376.11; MLOC_64376. DR Gramene; MLOC_64376.11; MLOC_64376.11; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ59; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 219 AA; 24864 MW; 833D5875AF39FDBB CRC64; MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASVQC YLTKAQKVKI AAIIEKIQSK ITVLVVQMKK SNVKRHANLV CKFYHLHFV // ID M0XZ60_HORVV Unreviewed; 437 AA. AC M0XZ60; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.12}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.12, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.12} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.12}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.12} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.12}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_64376.1; -. DR EnsemblPlants; MLOC_64376.1; MLOC_64376.1; MLOC_64376. DR EnsemblPlants; MLOC_64376.12; MLOC_64376.12; MLOC_64376. DR Gramene; MLOC_64376.1; MLOC_64376.1; MLOC_64376. DR Gramene; MLOC_64376.12; MLOC_64376.12; MLOC_64376. DR OMA; PREYTIV; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ60; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 214 315 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 315 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 437 AA; 49070 MW; 8D9423BCB2502CE0 CRC64; MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASAED SVDSANLQML SNNYVVSVQC YLTKAQKVKI AAIIEKIQSK ITVLVVQMKK SNVKRHANLV IRKDYALEHF PREYTIVILQ LPGKNKDWKG TFRIRPSGMS DAGRCNLYLG NFARDNHVRE GDICLFQPMT NVKQRRFLVK VHILHKVSID GTTQSSARKR PDSDGCLKED SSHNYKSANT PAVSYTSKEF SEENPAADEV MELDDLQTLS KDYVLSGKCD LTVAQGAKIN ALVDKIRPQI PVLVVQMKKS SSTNGAILTI KKDYAIK // ID M0XZ61_HORVV Unreviewed; 417 AA. AC M0XZ61; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.13}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.13, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.13} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.13}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.13} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.13}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.13; MLOC_64376.13; MLOC_64376. DR Gramene; MLOC_64376.13; MLOC_64376.13; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ61; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 194 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 194 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 417 AA; 46931 MW; 80CEBF1254992208 CRC64; MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASVQC YLTKAQKVKI AAIIEKIQSK ITVLVVQMKK SNVKRHANLV IRKDYALEHF PREYTIVILQ LPGKNKDWKG TFRIRPSGMS DAGRCNLYLG NFARDNHVRE GDICLFQPMT NVKQRRFLVK VHILHKVSID GTTQSSARKR PDSDGCLKED SSHNYKSANT PAVSYTSKEF SEENPAADEV MELDDLQTLS KDYVLSGKCD LTVAQGAKIN ALVDKIRPQI PVLVVQMKKS SSTNGAILTI KKDYAIK // ID M0XZ62_HORVV Unreviewed; 436 AA. AC M0XZ62; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.2; MLOC_64376.2; MLOC_64376. DR EnsemblPlants; MLOC_64376.3; MLOC_64376.3; MLOC_64376. DR Gramene; MLOC_64376.2; MLOC_64376.2; MLOC_64376. DR Gramene; MLOC_64376.3; MLOC_64376.3; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ62; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 436 AA; 48999 MW; B4FC8B5BA5C4255A CRC64; MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASEDS VDSANLQMLS NNYVVSVQCY LTKAQKVKIA AIIEKIQSKI TVLVVQMKKS NVKRHANLVI RKDYALEHFP REYTIVILQL PGKNKDWKGT FRIRPSGMSD AGRCNLYLGN FARDNHVREG DICLFQPMTN VKQRRFLVKV HILHKVSIDG TTQSSARKRP DSDGCLKEDS SHNYKSANTP AVSYTSKEFS EENPAADEVM ELDDLQTLSK DYVLSGKCDL TVAQGAKINA LVDKIRPQIP VLVVQMKKSS STNGAILTIK KDYAIK // ID M0XZ64_HORVV Unreviewed; 259 AA. AC M0XZ64; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.4; MLOC_64376.4; MLOC_64376. DR EnsemblPlants; MLOC_64376.6; MLOC_64376.6; MLOC_64376. DR Gramene; MLOC_64376.4; MLOC_64376.4; MLOC_64376. DR Gramene; MLOC_64376.6; MLOC_64376.6; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ64; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 133 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 259 AA; 29115 MW; 439396CE8DC50516 CRC64; MLSNNYVVSV QCYLTKAQKV KIAAIIEKIQ SKITVLVVQM KKSNVKRHAN LVIRKDYALE HFPREYTIVI LQLPGKNKDW KGTFRIRPSG MSDAGRCNLY LGNFARDNHV REGDICLFQP MTNVKQRRFL VKVHILHKVS IDGTTQSSAR KRPDSDGCLK EDSSHNYKSA NTPAVSYTSK EFSEENPAAD EVMELDDLQT LSKDYVLSGK CDLTVAQGAK INALVDKIRP QIPVLVVQMK KSSSTNGAIL TIKKDYAIK // ID M0XZ65_HORVV Unreviewed; 272 AA. AC M0XZ65; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.5}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.5; MLOC_64376.5; MLOC_64376. DR Gramene; MLOC_64376.5; MLOC_64376.5; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ65; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 50 146 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 272 AA; 30453 MW; 05A48BCFCFF77081 CRC64; MSNPCDSDGS QKERSFSSDE ASVQCYLTKA QKVKIAAIIE KIQSKITVLV VQMKKSNVKR HANLVIRKDY ALEHFPREYT IVILQLPGKN KDWKGTFRIR PSGMSDAGRC NLYLGNFARD NHVREGDICL FQPMTNVKQR RFLVKVHILH KVSIDGTTQS SARKRPDSDG CLKEDSSHNY KSANTPAVSY TSKEFSEENP AADEVMELDD LQTLSKDYVL SGKCDLTVAQ GAKINALVDK IRPQIPVLVV QMKKSSSTNG AILTIKKDYA IK // ID M0XZ67_HORVV Unreviewed; 428 AA. AC M0XZ67; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.7}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.7; MLOC_64376.7; MLOC_64376. DR Gramene; MLOC_64376.7; MLOC_64376.7; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ67; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 214 315 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 315 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 428 AA; 48008 MW; FC2E6847A8F41CDA CRC64; MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASAED SVDSANLQML SNNYVVSVQC YLTKAQKVKI AAIIEKIQSK ITVLVVQMKK SNVKRHANLV IRKDYALEHF PREYTIVILQ LPGKNKDWKG TFRIRPSGMS DAGRCNLYLG NFARDNHVRE GDICLFQPMT NVKQRRFLVK VHILHKVSID GTTQSSARKR PDSDGCLKED SSHNYKSANT PAVSYTSKEF SEENPAADEV MELDDLQTLS KDYVLSGKCD LTVAQGAKIN ALVDKIRPQI PVLVVQMKKS SSTNGAIL // ID M0XZ69_HORVV Unreviewed; 427 AA. AC M0XZ69; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64376.9}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64376.9, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64376.9} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64376.9}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64376.9} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64376.9}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64376.8; MLOC_64376.8; MLOC_64376. DR EnsemblPlants; MLOC_64376.9; MLOC_64376.9; MLOC_64376. DR Gramene; MLOC_64376.8; MLOC_64376.8; MLOC_64376. DR Gramene; MLOC_64376.9; MLOC_64376.9; MLOC_64376. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0XZ69; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 427 AA; 47937 MW; 2651385E748AEEA7 CRC64; MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASEDS VDSANLQMLS NNYVVSVQCY LTKAQKVKIA AIIEKIQSKI TVLVVQMKKS NVKRHANLVI RKDYALEHFP REYTIVILQL PGKNKDWKGT FRIRPSGMSD AGRCNLYLGN FARDNHVREG DICLFQPMTN VKQRRFLVKV HILHKVSIDG TTQSSARKRP DSDGCLKEDS SHNYKSANTP AVSYTSKEFS EENPAADEVM ELDDLQTLSK DYVLSGKCDL TVAQGAKINA LVDKIRPQIP VLVVQMKKSS STNGAIL // ID M0Y076_HORVV Unreviewed; 658 AA. AC M0Y076; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64596.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64596.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64596.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64596.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64596.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_64596.1; -. DR EnsemblPlants; MLOC_64596.1; MLOC_64596.1; MLOC_64596. DR Gramene; MLOC_64596.1; MLOC_64596.1; MLOC_64596. DR InParanoid; M0Y076; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y076; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 536 618 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 658 AA; 73058 MW; 4F3ACC62121B3628 CRC64; MAAAMHMPNP SAAGAPGIFS DALFRELWHA CAGPLITVPR QGERVYYFPQ GHMEQLEAST NQQLDQYLPM FNLPSKILCS VVNVELRTEA DSDEVYAQIM LQPEAKQDEL TSLGPEPQEL EKGTIHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMS QNPPCQELVA KDLHGTEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRHM RQVNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS VNKYLEAKKQ NTSVGMRFKM KFEGDEALER RFSGTIIGIG STPTMSTSPW ADSDWKSLKV QWDEPSSILR PDRVSPWELE PLDAANPQPP QPPLRNKRPR LPASPSVVPE LAPKFGLWKS PAEPSQTLSF SEPQQARGLF TNSRFSSSSN VAFNQFYWPA RESREDSYAA STNKATVERK LEPATGGCRL FGIEIRSAVE ETQPVVTVSG DGYDQTAASV DVDSGELSQP SNINNSGAQA ASSERALLDT QTRQVRSCTK VIMTGMAVGR AVDLTKLYGY VDLHRKLEEM FDIQGELCST LKKWQVVYAD EEDDMMLVGD DPWDEFCSMA KRIYIFTYEE AKQLAPKATK LSRVNSSHES VAPQSGSDYP ASFANADC // ID M0Y079_HORVV Unreviewed; 500 AA. AC M0Y079; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64596.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64596.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64596.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64596.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64596.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64596.4; MLOC_64596.4; MLOC_64596. DR Gramene; MLOC_64596.4; MLOC_64596.4; MLOC_64596. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y079; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 378 460 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 500 AA; 55620 MW; AACC5617B5027C3B CRC64; MSQNPPCQEL VAKDLHGTEW HFRHIFRGQP RRHLLTTGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR HMRQVNNMPS SVISSHSMHL GVLATASHAI STGTLFSVFY KPRTSQSEFV VSVNKYLEAK KQNTSVGMRF KMKFEGDEAL ERRFSGTIIG IGSTPTMSTS PWADSDWKSL KVQWDEPSSI LRPDRVSPWE LEPLDAANPQ PPQPPLRNKR PRLPASPSVV PELAPKFGLW KSPAEPSQTL SFSEPQQARG LFTNSRFSSS SNVAFNQFYW PARESREDSY AASTNKATVE RKLEPATGGC RLFGIEIRSA VEETQPVVTV SGDGYDQTAA SVDVDSGELS QPSNINNSGA QAASSERALL DTQTRQVRSC TKVIMTGMAV GRAVDLTKLY GYVDLHRKLE EMFDIQGELC STLKKWQVVY ADEEDDMMLV GDDPWDEFCS MAKRIYIFTY EEAKQLAPKA TKLSRVNSSH ESVAPQSGSD YPASFANADC // ID M0Y080_HORVV Unreviewed; 604 AA. AC M0Y080; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64596.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64596.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64596.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64596.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64596.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64596.5; MLOC_64596.5; MLOC_64596. DR Gramene; MLOC_64596.5; MLOC_64596.5; MLOC_64596. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y080; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 536 604 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 67144 MW; 0930731EA8E65645 CRC64; MAAAMHMPNP SAAGAPGIFS DALFRELWHA CAGPLITVPR QGERVYYFPQ GHMEQLEAST NQQLDQYLPM FNLPSKILCS VVNVELRTEA DSDEVYAQIM LQPEAKQDEL TSLGPEPQEL EKGTIHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMS QNPPCQELVA KDLHGTEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRHM RQVNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS VNKYLEAKKQ NTSVGMRFKM KFEGDEALER RFSGTIIGIG STPTMSTSPW ADSDWKSLKV QWDEPSSILR PDRVSPWELE PLDAANPQPP QPPLRNKRPR LPASPSVVPE LAPKFGLWKS PAEPSQTLSF SEPQQARGLF TNSRFSSSSN VAFNQFYWPA RESREDSYAA STNKATVERK LEPATGGCRL FGIEIRSAVE ETQPVVTVSG DGYDQTAASV DVDSGELSQP SNINNSGAQA ASSERALLDT QTRQVRSCTK VIMTGMAVGR AVDLTKLYGY VDLHRKLEEM FDIQGELCST LKKWQVVYAD EEDDMMLVGD DPWE // ID M0Y0L0_HORVV Unreviewed; 1279 AA. AC M0Y0L0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64708.10}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64708.10, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64708.10} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64708.10}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64708.10} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64708.10}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; M0Y0L0; -. DR STRING; 4513.MLOC_64708.1; -. DR EnsemblPlants; MLOC_64708.1; MLOC_64708.1; MLOC_64708. DR EnsemblPlants; MLOC_64708.10; MLOC_64708.10; MLOC_64708. DR EnsemblPlants; MLOC_64708.2; MLOC_64708.2; MLOC_64708. DR EnsemblPlants; MLOC_64708.3; MLOC_64708.3; MLOC_64708. DR EnsemblPlants; MLOC_64708.4; MLOC_64708.4; MLOC_64708. DR EnsemblPlants; MLOC_64708.5; MLOC_64708.5; MLOC_64708. DR EnsemblPlants; MLOC_64708.6; MLOC_64708.6; MLOC_64708. DR EnsemblPlants; MLOC_64708.8; MLOC_64708.8; MLOC_64708. DR Gramene; MLOC_64708.1; MLOC_64708.1; MLOC_64708. DR Gramene; MLOC_64708.10; MLOC_64708.10; MLOC_64708. DR Gramene; MLOC_64708.2; MLOC_64708.2; MLOC_64708. DR Gramene; MLOC_64708.3; MLOC_64708.3; MLOC_64708. DR Gramene; MLOC_64708.4; MLOC_64708.4; MLOC_64708. DR Gramene; MLOC_64708.5; MLOC_64708.5; MLOC_64708. DR Gramene; MLOC_64708.6; MLOC_64708.6; MLOC_64708. DR Gramene; MLOC_64708.8; MLOC_64708.8; MLOC_64708. DR OMA; DIMDAPR; -. DR OrthoDB; EOG093601TN; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y0L0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.80.10.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1047 1152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1198 1258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1047 1152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1198 1258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1279 AA; 145977 MW; 1AC37636C615AB5B CRC64; MLFDSSVSAS LGTMRPLVKK LDMLLAPARG YSTLCKRIKE VMHLLKHDVE EISSYLDELT EVEDPPPMAK CWMNEARDLS YDMEDYIDSL LFVPPGHFIK KKKKKKKKGK KKMVIKKRLK WCKQIVFTKQ VSDHGIKTSK IIHVNVPRLP NKPKVAKIIL QFRIYVQEAI ERYDKYRLHH CSTLRRRLLS TGSMLSVPIP YEEAAQIVTD GRMNEFISSL AANNAADQQQ LKVVSVLGSG CLGKTTLANV LYDRIGMQFE CRAFIRVSKK PDMKRLFRDL LSQFHQKQPL PTSCNELGIS DNIIKHLQDK RYLIVIDDLW DLSVWDIIKY AFPKGNHGSR IIITTQIEDV ALTCCCDHSE HVFEMKPLNI GHSRELFFNR LFGSESDCLE EFKRVSNEIV DICGGLPLAT INIASHLANQ ETEVSLDLLT DTRDLLRSCL WSNSTSERTK QVLNLSYSNL PDYLKTCLLY LHMYPVGSII WKDDLVKQLV AEGFIATREG KDQDQEMIEK AAGLCFDALI DRRFIQPIYT KYNNKVLSCT VHEVVHDLIA QKSAEENFIV VADHNRKNIA LSHKVRRLSL IFGDTIYAKT PANITKSQIR SFRFFGLFEC MPCITEFKVL RVLNLQLSGH RGDNDPIDLT GISELFQLRY LKITSDVCIK LPNQMQKLQY LETLDIMDAP RVTAVPWDII NLPHLLHLTL PVDTYLLDWI SSMTDSVISL WTLGKLNYLQ HLHLTSSSTR PSYHLERSVE ALGYLIGGHG KLKTIVVAHV SSAQNTVVRG APEVTISWDR MSPPPLLQRF ECPHSCFIFY RIPKWVTELG NLCILKIAVK ELHMICLGTL RGLHALTDLS LYVETAPIDK IIFDKAGFSV LKYCKLRFAA GIAWLKFEAD AMPSLWKLML VFNAIPRMDQ NLVFFHHSRP AMHQRGGAVI IVEHMPGLRV ISAKFGGAAS DLEYASRTVV SNHPSNPTIN MQLVCYSSNG KRSRKRKQQP YDVVKGQPDE YAKRLERPAE KRISTPTKSS LRLHVPEITP KPMQITDNNV QRREHMFDTV LTRGDVGMLN RLVVPKKHAE KYFPLDSSST RTSKAIVLSF EDPAGKSWFF HYSYRSSSQN YVMFKGWTGF VKEKFLEAGD TVSFSRGVGE ATRGRLFIDC QNEQRYMFER VLTASDMESD GCSLMVPVNL VWPHPGLRKT IKGRHAVLQF EDGSGNGKVW PFQFEASGQY YLMKGLNYFV NDRDLAAGYT VSFYRAGTRL FVDSGRKDDK VALGTRSRER IYPKIVRSQ // ID M0Y0L6_HORVV Unreviewed; 1267 AA. AC M0Y0L6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64708.7}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64708.7, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64708.7} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64708.7}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64708.7} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64708.7}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64708.7; MLOC_64708.7; MLOC_64708. DR Gramene; MLOC_64708.7; MLOC_64708.7; MLOC_64708. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y0L6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.80.10.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1035 1140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1186 1246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1035 1140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1186 1246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1267 AA; 144752 MW; DC44412A64BFC37C CRC64; MRPLVKKLDM LLAPARGYST LCKRIKEVMH LLKHDVEEIS SYLDELTEVE DPPPMAKCWM NEARDLSYDM EDYIDSLLFV PPGHFIKKKK KKKKKGKKKM VIKKRLKWCK QIVFTKQVSD HGIKTSKIIH VNVPRLPNKP KVAKIILQFR IYVQEAIERY DKYRLHHCST LRRRLLSTGS MLSVPIPYEE AAQIVTDGRM NEFISSLAAN NAADQQQLKV VSVLGSGCLG KTTLANVLYD RIGMQFECRA FIRVSKKPDM KRLFRDLLSQ FHQKQPLPTS CNELGISDNI IKHLQDKRYL IVIDDLWDLS VWDIIKYAFP KGNHGSRIII TTQIEDVALT CCCDHSEHVF EMKPLNIGHS RELFFNRLFG SESDCLEEFK RVSNEIVDIC GGLPLATINI ASHLANQETE VSLDLLTDTR DLLRSCLWSN STSERTKQVL NLSYSNLPDY LKTCLLYLHM YPVGSIIWKD DLVKQLVAEG FIATREGKDQ DQEMIEKAAG LCFDALIDRR FIQPIYTKYN NKVLSCTVHE VVHDLIAQKS AEENFIVVAD HNRKNIALSH KVRRLSLIFG DTIYAKTPAN ITKSQIRSFR FFGLFECMPC ITEFKVLRVL NLQLSGHRGD NDPIDLTGIS ELFQLRYLKI TSDVCIKLPN QMQKLQYLET LDIMDAPRVT AVPWDIINLP HLLHLTLPVD TYLLDWISSM TDSVISLWTL GKLNYLQHLH LTSSSTRPSY HLERSVEALG YLIGGHGKLK TIVVAHVSSA QNTVVRGAPE VTISWDRMSP PPLLQRFECP HSCFIFYRIP KWVTELGNLC ILKIAVKELH MICLGTLRGL HALTDLSLYV ETAPIDKIIF DKAGFSVLKY CKLRFAAGIA WLKFEADAMP SLWKLMLVFN AIPRMDQNLV FFHHSRPAMH QRGGAVIIVE HMPGLRVISA KFGGAASDLE YASRTVVSNH PSNPTINMQL VCYSSNGKRS RKRKQQPYDV VKGQPDEYAK RLERPAEKRI STPTKSSLRL HVPAEITPKP MQITDNNVQR REHMFDTVLT RGDVGMLNRL VVPKKHAEKY FPLDSSSTRT SKAIVLSFED PAGKSWFFHY SYRSSSQNYV MFKGWTGFVK EKFLEAGDTV SFSRGVGEAT RGRLFIDCQN EQRYMFERVL TASDMESDGC SLMVPVNLVW PHPGLRKTIK GRHAVLQFED GSGNGKVWPF QFEASGQYYL MKGLNYFVND RDLAAGYTVS FYRAGTRLFV DSGRKDDKVA LGTRSRERIY PKIVRSQ // ID M0Y0Z7_HORVV Unreviewed; 688 AA. AC M0Y0Z7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64795.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64795.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64795.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64795.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64795.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_64795.1; -. DR EnsemblPlants; MLOC_64795.1; MLOC_64795.1; MLOC_64795. DR EnsemblPlants; MLOC_64795.2; MLOC_64795.2; MLOC_64795. DR EnsemblPlants; MLOC_64795.3; MLOC_64795.3; MLOC_64795. DR Gramene; MLOC_64795.1; MLOC_64795.1; MLOC_64795. DR Gramene; MLOC_64795.2; MLOC_64795.2; MLOC_64795. DR Gramene; MLOC_64795.3; MLOC_64795.3; MLOC_64795. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 593 673 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 688 AA; 74247 MW; 6EE95ADE780536EE CRC64; MKEVGAERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANGGGAAE LAAAVGPRPL PALVLCCVAG VRFLADPDTD EVFAKIRLVP VGPGEAGFRE PEGLGPLGSD PPEAREKLSS FAKTLTQSDA NNGGGFSVPR YCAETIFPKL DYRADPPVQT VLAKDVHGEV WKFRHIYRGT PRRHLLTTGW STFVNQKKLV AGDSIVFLRT EHGELCVGIR RAKRVTCGGM ECISGWNAPG YGGFSAFLKD EENKMMNGGP AGYVKGRGKV KIADVVEAAT LAANSQPFEV VYYPRASTPE FVVKAAAMQA AMRIHWCPGM RFKMAFETED SSRISWFMGT ISSVQVADPL RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSPPRK KLRVPQHPDF PLDGHLFNPI FHGNPLGPSN SPLCCYSDNN SPAGIQGARH AQFGLPLTDH QLNKLHLGLF HGGGFNGLDA LTPSSRIPKG LVLSSAPAHD SVSCLLTIGT PQSTEKSVDR KTPHIMLFGK AILTEQQMTS SGSRETLSSG ATGNSSPISA ALKAGNTSDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM ESEDVGRTID LSVFGSYDEL YGRLADMFGI DKEEITSHLR YRDTAGAVMH TGGLPFSDFM KVARRLTITS GDKGGLAKPL IECMVQRV // ID M0Y110_HORVV Unreviewed; 485 AA. AC M0Y110; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64801.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64801.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64801.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64801.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64801.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64801.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64801.1; MLOC_64801.1; MLOC_64801. DR Gramene; MLOC_64801.1; MLOC_64801.1; MLOC_64801. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y110; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 273 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 273 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 485 AA; 54734 MW; F6E9E21130B56237 CRC64; MPSKDYVLHR KKEKNYVLQG KLDLTAAQKA KIDAIDEKIR PKIPMLVVRM KKTNVKLYSD LAILKDYAVN HFPSKTQTIT LKLHQKSKEW MCNFRVMPDE KGHHLYLHEF VRDNNVGEGD LCIFQPMTKG DVRNFKVTVH HLSKASVDHS PVERNDICTN DGTIQEKSSY SVDIRSSSDD HTEQPSGRKI YPSCQRGSSR DHRNTAKKAA KSTSFEKSGE ESPLEYNSVK SDDRQTSRGH NYALSLGSCL SGAQYAKVIA LKERIQPETA VYVDVMNQRA VELPSPLLII PEEHAIAHFP NESVTITLEA PDKKSKKWHP RFYMTEDRSE CMLIGHWLDF VCDNNVQEGD ICIFIPEKGG MRSKFTVHLL RGETSHSGDG TGGVQVAGSD EGKTNTKRKC FLGSNVHRVS HEPLERNNSD GFIQKRKKSN GLVPPYILPA MTHLSPSQEN IVEAKVQAIQ SEVPIYVSIM KKRCISAIKH NMLVS // ID M0Y111_HORVV Unreviewed; 486 AA. AC M0Y111; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_64801.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_64801.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_64801.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_64801.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_64801.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_64801.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_64801.2; MLOC_64801.2; MLOC_64801. DR Gramene; MLOC_64801.2; MLOC_64801.2; MLOC_64801. DR InParanoid; M0Y111; -. DR OMA; PSEYESI; -. DR OrthoDB; EOG093605DY; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y111; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 274 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 274 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 486 AA; 54834 MW; 74937ECD417F16B2 CRC64; MPSKDYVLHR KKEKNYVLQG KLDLTAAQKA KIDAIDEKIR PKIPMLVVRM KKTNVKLYSD LVAILKDYAV NHFPSKTQTI TLKLHQKSKE WMCNFRVMPD EKGHHLYLHE FVRDNNVGEG DLCIFQPMTK GDVRNFKVTV HHLSKASVDH SPVERNDICT NDGTIQEKSS YSVDIRSSSD DHTEQPSGRK IYPSCQRGSS RDHRNTAKKA AKSTSFEKSG EESPLEYNSV KSDDRQTSRG HNYALSLGSC LSGAQYAKVI ALKERIQPET AVYVDVMNQR AVELPSPLLI IPEEHAIAHF PNESVTITLE APDKKSKKWH PRFYMTEDRS ECMLIGHWLD FVCDNNVQEG DICIFIPEKG GMRSKFTVHL LRGETSHSGD GTGGVQVAGS DEGKTNTKRK CFLGSNVHRV SHEPLERNNS DGFIQKRKKS NGLVPPYILP AMTHLSPSQE NIVEAKVQAI QSEVPIYVSI MKKRCISAIK HNMLVS // ID M0Y5S6_HORVV Unreviewed; 556 AA. AC M0Y5S6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_65945.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_65945.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_65945.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_65945.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_65945.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_65945.3; MLOC_65945.3; MLOC_65945. DR EnsemblPlants; MLOC_65945.4; MLOC_65945.4; MLOC_65945. DR Gramene; MLOC_65945.3; MLOC_65945.3; MLOC_65945. DR Gramene; MLOC_65945.4; MLOC_65945.4; MLOC_65945. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y5S6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 452 532 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 556 AA; 61237 MW; 234F11FBE7E8BBDA CRC64; MTMPTPTQEI ISKDLHGSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLMA GDAFVYLRSE TGEQRVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAI KTNSIFVVYY RPRLSQSQYI VSVNKYHLAS KTGFTVGMRF RMNFEAEDVP VKKFFGTIVG DGDFSPQWSG SEWKSLKVQW DDSVAICNGP ERVSPWEIDS SDVSSPAIST LLQSSAKNKR PRETNENMNL PSQEPTQEFW LSGVTQQHER TYVGSSDPNR ISGSGYHQIL WPSEHAGYGA MSSSSVCQTP LGLGDGWFKD FNTSSQGVSP TLSEITQKLN RVASSEGRAP PPWATALCGG YRAEEPTSKL SCNATLPLPS PLTEQVAPYL LKVAEKVKGP GMVRLFGVNL MENTNNAAAA TAGNASVGAG ETSARITGSV EGSGQLSAFS KVTKVVNESP REIQSQQSSI GRNRVKVQMH GNAVGRAVDL ASLDGYERLT NELEQMFEIK DIKQNFKVAF NDNEGDTMKV GDDPWMEFCR MVRKIVIYPI EDDKNMDPHQ TSVFAAAPDE DLKANL // ID M0Y5S8_HORVV Unreviewed; 646 AA. AC M0Y5S8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_65945.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_65945.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_65945.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_65945.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_65945.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_65945.5; MLOC_65945.5; MLOC_65945. DR Gramene; MLOC_65945.5; MLOC_65945.5; MLOC_65945. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y5S8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 60 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 646 AA; 71277 MW; 28F958CDE0546491 CRC64; MFQVPYKILC KVVNVELKAE TETDEVYAQI TLQPDADQSD LPLILDPTLP ETPRPVVHTF CKILTPSDTS THGGFSVLRR HANECLPPLD MTMPTPTQEI ISKDLHGSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLMA GDAFVYLRSE TGEQRVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAI KTNSIFVVYY RPRLSQSQYI VSVNKYHLAS KTGFTVGMRF RMNFEAEDVP VKKFFGTIVG DGDFSPQWSG SEWKSLKVQW DDSVAICNGP ERVSPWEIDS SDVSSPAIST LLQSSAKNKR PRETNENMNL PSQEPTQEFW LSGVTQQHER TYVGSSDPNR ISGSGYHQIL WPSEHAGYGA MSSSSVCQTP LGLGDGWFKD FNTSSQGVSP TLSEITQKLN RVASSEGRAP PPWATALCGG YRAEEPTSKL SCNATLPLPS PLTEQVAPYL LKVAEKVKGP GMVRLFGVNL MENTNNAAAA TAGNASVGAG ETSARITGSV EGSGQLSAFS KVTKVVNESP REIQSQQSSI GRNRVKVQMH GNAVGRAVDL ASLDGYERLT NELEQMFEIK DIKQNFKVAF NDNEGDTMKV GDDPWMEFCR MVRKIVIYPI EDDKNMDPHQ TSVFAAAPDE DLKANL // ID M0Y6F7_HORVV Unreviewed; 423 AA. AC M0Y6F7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_66152.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_66152.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_66152.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_66152.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_66152.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_66152.1; MLOC_66152.1; MLOC_66152. DR Gramene; MLOC_66152.1; MLOC_66152.1; MLOC_66152. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y6F7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 423 AA; 47137 MW; EA6505D8C3020E6E CRC64; MNLSPSAGGG CLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ VSVSTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL HGNEWKFRHI FRGQPKRHLL TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGTSGKED DLTSSLMWLR DGANPGFQSF NFG // ID M0Y6F8_HORVV Unreviewed; 452 AA. AC M0Y6F8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_66152.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_66152.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_66152.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_66152.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_66152.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_66152.2; MLOC_66152.2; MLOC_66152. DR Gramene; MLOC_66152.2; MLOC_66152.2; MLOC_66152. DR InParanoid; M0Y6F8; -. DR OMA; HENTNQA; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y6F8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 452 AA; 50346 MW; D5C531C9F87A564B CRC64; MNLSPSAGGG CLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ VSVSTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL HGNEWKFRHI FRGQPKRHLL TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGTSGKED DLTSSLMWLR DGANPGFQSF NFGGLGMSPW MQPRMDNSLL GMQPDMYQAI SA // ID M0Y6F9_HORVV Unreviewed; 450 AA. AC M0Y6F9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_66152.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_66152.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_66152.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_66152.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_66152.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_66152.3; MLOC_66152.3; MLOC_66152. DR Gramene; MLOC_66152.3; MLOC_66152.3; MLOC_66152. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y6F9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 450 AA; 50158 MW; 87165522B0F7DE13 CRC64; MNLSPSAGGG CLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ VSVSTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL HGNEWKFRHI FRGQPKRHLL TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGGKEDDL TSSLMWLRDG ANPGFQSFNF GGLGMSPWMQ PRMDNSLLGM QPDMYQAISA // ID M0Y6G0_HORVV Unreviewed; 352 AA. AC M0Y6G0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_66152.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_66152.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_66152.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_66152.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_66152.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_66152.4; MLOC_66152.4; MLOC_66152. DR Gramene; MLOC_66152.4; MLOC_66152.4; MLOC_66152. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y6G0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 39868 MW; FC833BBB949238E1 CRC64; MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFISAKRLVA GDSVLFIWND NNQLLLGIRR ANRSQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLAKYVKAV YHTRISVGMR FRMLFETEES SVRRYMGTIT GISDLDPARW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTYPMYSS PFPMRLKRPW PTGLPSLYGT SGKEDDLTSS LMWLRDGANP GFQSFNFGGL GMSPWMQPRM DNSLLGMQPD MYQAISAASF QNTAKQVSPA LLQFQQPQNI AGRSALLSSQ ILQQVQPQFQ EMHHQNINGS AIQGHNQSEY LQQQLQRCQS FN // ID M0Y6G1_HORVV Unreviewed; 349 AA. AC M0Y6G1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_66152.5, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_66152.5} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_66152.5}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_66152.5} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_66152.5}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_66152.5; MLOC_66152.5; MLOC_66152. DR Gramene; MLOC_66152.5; MLOC_66152.5; MLOC_66152. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Y6G1; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 39566 MW; 20965CA6C11BDB47 CRC64; MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFISAKRLVA GDSVLFIWND NNQLLLGIRR ANRSQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLAKYVKAV YHTRISVGMR FRMLFETEES SVRRYMGTIT GISDLDPARW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTYPMYSS PFPMRLKRPW PTGLPSLYGG KEDDLTSSLM WLRDGANPGF QSFNFGGLGM SPWMQPRMDN SLLGMQPDMY QAISAASFQN TAKQVSPALL QFQQPQNIAG RSALLSSQIL QQVQPQFQEM HHQNINGSAI QGHNQSEYLQ QQLQRCQSF // ID M0Y772_HORVV Unreviewed; 409 AA. AC M0Y772; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_66387.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_66387.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_66387.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_66387.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_66387.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_66387.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_66387.1; MLOC_66387.1; MLOC_66387. DR EnsemblPlants; MLOC_66387.2; MLOC_66387.2; MLOC_66387. DR Gramene; MLOC_66387.1; MLOC_66387.1; MLOC_66387. DR Gramene; MLOC_66387.2; MLOC_66387.2; MLOC_66387. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 44070 MW; 6DE87F8AAACE7460 CRC64; MEFTATSSRF SKGEEEVEEE QEEASMREIP FMTPAAATCA AAPPSASASA STPASASGSS PPFRSGDDAG ASGSGAGDGS RSNVAEAVEK EHMFDKVVTP SDVGKLNRLV IPKQYAEKYF PLDSAANEKG LLLNFEDSAG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFS RGAGEAARHR LFIDWKRRAD TRDPLRLPRL PLPMPLTSHY SPWGLGAGAR GFFMPPSPPA TLYEHRLRQG FDFRGMNPSY PTMGRQVILF GSAARMPPHG PAPLLVPRPP PPLHFTVQQQ GSDAGGSVTA GSPVVLDSVP VIESPTTATK KRVRLFGVNL DNPQHPGDGG GESSNYGSAL PLQMPASAWR PRDHTLRLLE FPSHGAEASS PSSSSSSKRE AHSGLDLDL // ID M0Y7E0_HORVV Unreviewed; 547 AA. AC M0Y7E0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_66439.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_66439.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_66439.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_66439.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_66439.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_66439.1; -. DR EnsemblPlants; MLOC_66439.1; MLOC_66439.1; MLOC_66439. DR Gramene; MLOC_66439.1; MLOC_66439.1; MLOC_66439. DR InParanoid; M0Y7E0; -. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 547 AA; 59635 MW; 6F3F2963AB0C7348 CRC64; MGGGRFEGED DMEDVDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ IRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE LRLGVRRAIQ LKNEALLKAF NSNSSKIHTL SAVVNSLKHR SVFHICYNPR AAASEFIVPY WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR SGMITGINEV DPIRWTGSKW KSLLVRWEDG IDCNNQNRLS PWEIEIVGGS VSIAQSLSAS SSKRTKLCPQ GNLDVPTLYG NGRPDSVGAD KLPRVLQGQE LMGSGTHRVT CPPQPGGATE FRRSDGAGFL TDTRSCMLSG PASRLPPQSS YFAYQPVGFG ESVRFPEVLQ GQEVCQTVPL FQGMVSDTCS TKGGYGLYNY MCTSSAMNGG LSSAAQGYPL SLATPPPAEA ASPSQLCLAS KSNEEAGNGS QPNPLGIRKA PGDGAAKLGS DGRKVARTSC MLFGFSLTEK MLPTEEDCAK EGSHEADCQN PRMLDLFGYN RATPSALHAL CAAPLGI // ID M0YCH8_HORVV Unreviewed; 365 AA. AC M0YCH8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_67886.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_67886.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_67886.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_67886.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_67886.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_67886.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_67886.1; MLOC_67886.1; MLOC_67886. DR Gramene; MLOC_67886.1; MLOC_67886.1; MLOC_67886. DR InParanoid; M0YCH8; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG09360IIV; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 201 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 104 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 40422 MW; 43BEF8FA620FA6E6 CRC64; MRLSLSFFYK LVRPTPRFAH PRPEHQQAKN GTWYSDNCAV PFFLPQAGSS YTPLCSHSAR TPSSSPPSLA GCRCQEGVRS PPPAAPYDAA STRQETREMD GLEGFEFFEI ILENPSSRLR LPDKFTRVLL DGFKPKEVKL REAGHGRRFW GVKVVLDADG HMYLGRGWEQ FARAHDLRLG YFLVFSYDGD AVLTVKVFDV SMCRRHYQHD GDASSGSSSD GDSGSNNGSV GDSGGGNISG MVATMGIDDG PTSQFTVMLR ESNLGVRQKQ YLNVPADFQN AHGYGERTKV ELRMRGKSWS VNLKHSPRNR GRPRASLRYG WHQFCVDNGL GVGDTCFFRA LGDGGAGDTH LLKVEVRKRD GGYVV // ID M0YDF1_HORVV Unreviewed; 600 AA. AC M0YDF1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_68151.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_68151.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_68151.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_68151.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_68151.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_68151.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_68151.1; MLOC_68151.1; MLOC_68151. DR Gramene; MLOC_68151.1; MLOC_68151.1; MLOC_68151. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YDF1; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 499 597 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 499 597 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 67513 MW; B00600BCC7462120 CRC64; MERPCDCCKR YADHLDEKMK CFRRHMGADF RHGMIIPKKF IDNFGGKISR TIELESYNGN MYVFEVSKHM GNIALRHGWQ AFIDEHHIQE NDSLLFRHIE KSRFEVLVLD SDDCEKVFFC PGINIASNAE ERGVHSVDIS NGSRGNATRS PGSKRFATCG RRNSSHPRKV AKTVINYSSP ENSGEDTENE NTDTIYSSSE DSGEDTEPAN TDIEYSSSRD SEEGTEDIPL EYKSSFELDD GHPPSGHDYV LARGSTLSSV QDEKVTTLIQ DVGAEIPAFV AVMKPSYVKS QTSALVIPKG YADEHFPPKS QTVVLECPGK SEKWHPRFHI RKDKHGAILC GSGWLDFVRK SRVQVGDICV FERMKKGTGR KFSLRVHVLH KSMLHSGGSG TGPKRVSLTH GKTMVNSGTP KRVRTTNGRT RAKATSTTCV RKEPGGDAPY SVHSHGHEAR QGPVDSDKSR RPRKRPYIIS STACLTREQK MNVDKRVRAL QSKVPIYVSI MNKSSVGNNS MYSVNICREY ADEYLPAGEQ TVTLVTAQRS KSWEVEVHPR DGGAKVLRGD WHKFACHNHL QVKDICLFQL MTDQRKLTMM VDIIHHNEKR // ID M0YDF2_HORVV Unreviewed; 602 AA. AC M0YDF2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_68151.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_68151.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_68151.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_68151.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_68151.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_68151.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_68151.2; MLOC_68151.2; MLOC_68151. DR Gramene; MLOC_68151.2; MLOC_68151.2; MLOC_68151. DR InParanoid; M0YDF2; -. DR OMA; FTGRKFR; -. DR OrthoDB; EOG0936089E; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YDF2; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 501 599 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 501 599 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 602 AA; 67709 MW; 1A1C14EF55A814C7 CRC64; MERPCDCCKR YADHLDEKMK CFRRHMGADF RHGMIIPKKF IDNFGGKISR TIELESYNGN MYVFEVSKHM GNIALRHGWQ AFIDEHHIQE NDSLLFRHIE KSRFEVLVLD SDDCEKVFFC PGINIASNAE ERGVHSVDIS NGSRGNATRS PGSKRFATCG RRNSSHPRKV AKTVINYSSP ENSGEDTENE NTDTIYSSSE DSGEDTEPAN TDIEYSSSRD SEEGTEDIPL EYKSSFELDD GHPPSGHDYV LARGSTLSSV QDEKVTTLIQ DVGAEIPAFV AVMKPSYVKS QTSALVIPKG YADEHFPPKS QTVVLECPGK SEKWHPRFHI RKDKHGAILC GSGWLDFVRK SRVQVGDICV FERMKKGTGR KFSLRVHVLH KSMLHSGGSG TGPKRVSLTH GKTMVNSGTP KRVRTTNGRT RAKATSTTCV RKEPVPGGDA PYSVHSHGHE ARQGPVDSDK SRRPRKRPYI ISSTACLTRE QKMNVDKRVR ALQSKVPIYV SIMNKSSVGN NSMYSVNICR EYADEYLPAG EQTVTLVTAQ RSKSWEVEVH PRDGGAKVLR GDWHKFACHN HLQVKDICLF QLMTDQRKLT MMVDIIHHNE KR // ID M0YDF3_HORVV Unreviewed; 314 AA. AC M0YDF3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_68151.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_68151.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_68151.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_68151.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_68151.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_68151.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_68151.3; MLOC_68151.3; MLOC_68151. DR Gramene; MLOC_68151.3; MLOC_68151.3; MLOC_68151. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YDF3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 311 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 311 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 35492 MW; 1F9147B28B474C11 CRC64; MSSHKLLLLV IPKGYADEHF PPKSQTVVLE CPGKSEKWHP RFHIRKDKHG AILCGSGWLD FVRKSRVQVG DICVFERMKK GTGRKFSLRV HVLHKSMLHS GGSGTGPKRV SLTHGKTMVN SGTPKRVRTT NGRTRAKATS TTCVRKEPGG DAPYSVHSHG HEARQGPVDS DKSRRPRKRP YIISSTACLT REQKMNVDKR VRALQSKVPI YVSIMNKSSV GNNSMYSVNI CREYADEYLP AGEQTVTLVT AQRSKSWEVE VHPRDGGAKV LRGDWHKFAC HNHLQVKDIC LFQLMTDQRK LTMMVDIIHH NEKR // ID M0YED7_HORVV Unreviewed; 216 AA. AC M0YED7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_68409.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_68409.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_68409.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_68409.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_68409.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_68409.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_68409.2; MLOC_68409.2; MLOC_68409. DR Gramene; MLOC_68409.2; MLOC_68409.2; MLOC_68409. DR InParanoid; M0YED7; -. DR OMA; WCDETIS; -. DR OrthoDB; EOG093616XI; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YED7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 216 AA; 24905 MW; 31DF473DBA071A4B CRC64; MAEPNSYEEQ RRRQVEENKR KLDELRLHRL STAVREAAVK PVPTEEPKLR YLRPPPPPTR RSGRVAGLPK QPDYRYSVDN TRRELPPAPV YATNEASTYA FTKAKELKNQ LCSDQPSFIK PISNYSDARG PLGIPLQFRE MYLPWCDETI SLIDQEDVEF EMTYLAKHGA ICSGWSLFSI GHKLADGDCL VFQLVQRTKF KVYIIGASSY YEQDHH // ID M0YFU7_HORVV Unreviewed; 303 AA. AC M0YFU7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_689.9}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_689.9, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_689.9} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_689.9}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_689.9} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_689.9}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_689.9; MLOC_689.9; MLOC_689. DR Gramene; MLOC_689.9; MLOC_689.9; MLOC_689. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YFU7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 217 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 108 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 217 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 34424 MW; 961011AE7FA00DEB CRC64; MNHNPGPPKR GAPHDDPMLS PEGERLAKRH NGCCGDICKT SKMNAAGSPL KPSKAKKEAP SSEDARSSGE LQTSTRSRYF LATGCNLTEA HKVEVNRIEQ NIRPEIPLYA KTISSASLVD GFLAICKDYA IEHLPREDEA ITLCHASHSK TWVVHYKINA DGTYHLSAGW SGFVNDNELQ KGDTCVFEVL MRQRSFTMAV HLLKTRYHHP PGFAASSKSL RPEAKSFRPE DKAFSLDYAN DYLPGQDQNF RLHRPRESAP WKTQFRRFAS RRWLVRGWNQ FVIDNELKLD DVCLFERIEN KKK // ID M0YFV0_HORVV Unreviewed; 747 AA. AC M0YFV0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_68907.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_68907.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_68907.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_68907.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_68907.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_68907.1; MLOC_68907.1; MLOC_68907. DR Gramene; MLOC_68907.1; MLOC_68907.1; MLOC_68907. DR InParanoid; M0YFV0; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YFV0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 174 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 626 719 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 72 174 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 747 AA; 83942 MW; B1EF2D3760B1F2EC CRC64; MNQVAGNQMR LYDLPPKLLC RVINVELKAE ADTDEVYAQV MLMPEPEQNE MAVDKSTSTT GATPPRPAVR SFCKTLTASD TSTHGGFSVL RRHADECLPS LDMTQSPPTQ ELVAKDLHGM DWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GESGELRVGV RRAMRQLSNV PSSVISSHSM HLGVLATAWH AINTKSMFTV YYKPRTSPSE FIIPYDQYME SVKNNYSIGM RFRMRFEGEE APEQRFTGTI VGSENLDQLW PESNWRSLKV RWDEPSTIPR PDRVSPWKIE PASSPPVNPL PLSRVKRPRP NVPPVSPESS VLTKEGATKI DMDSAQAQQR NQNNMVLQGQ EHMTLRTNNL TGSNDSDATV QKPMMWSPSP NIGKNHASAF QQRPSMENWM QLGRCETAFK DASSGAQSFG DSQGFFMQTF DEAPNRHGSF KNQFQDHSSA RHFSDPYTKM HTEANEFHFW NSQSTVYGNP RDQSQGFRFE EHPSNWLRQQ QFSPVEQPRV IRPQASIAPV DLEKAREGSG FKIFGFKVDT TSAPSNHLSS TMAVIHEPVL QTQASASLTQ LQHAHIDCIP ELSVSTAGTT ENEKSIQQAP NSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFGDY DELTAELDRM FEFDGELMSS NRDWQIVYTD PEGDMMLVGD DPWEEFCSIV RKIFIYTKEE VQKMNSKSST PRKEEGSADA DGANEKAHLA ASSHLDN // ID M0YIR4_HORVV Unreviewed; 681 AA. AC M0YIR4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_69727.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_69727.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_69727.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_69727.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_69727.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_69727.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_69727.1; MLOC_69727.1; MLOC_69727. DR Gramene; MLOC_69727.1; MLOC_69727.1; MLOC_69727. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YIR4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 527 628 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 527 628 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 681 AA; 72365 MW; 2E947B09C811444A CRC64; MDASAGSSPP RHPQGSAPRR GKGPAVEIRH GEDDFMFAQD TFPALPDFPC LSSPSSSNFS SSSSSNSSSA FAAPAGVGGR GGEGTRGEPS EPAAAGDGVD DLSDIDHLLD FASINDDVPW DDEPLFPDVG MMLEDVISEQ QQQQQQHPLA GYGAGGRVAS DAAGGGGEDA FMGGGGSGSA ADDLPRFFME WLTNNRDCIS AEDLRSIRLR RSTIEAAAAR LGGGRQGTMQ LLKLILTWVQ NHHLQKKRPR VGAMDQEAPP AGGQLPSPGA NPSYEFPTET GAAAATSWMP YQAFSPTASY GGEAMYPFQQ GCSTSSVVVS SQPFSPPAAA DMHAGAWPLQ YAAFVPAGAT SAGTQTYPMP PPGPVPQPFA APGFAGQFPQ RMEPAATREA RKKRMARQRR LSCLQQQRSQ QLNLSQIQTG GFPQEPSPRA AHSAPVWGGH WSPPAVQAQP HGQLMIQVPN PLSTKSNSSR QKQQKPSPDA AARPPSGGAA SQQRQGQAAA SDKQRQQGAS RTAAAPPAGD KNLRFLLQKV LKQSDVGTLG RIVLPKEAET HLPELKTGDG ISIPIEDIGT SQVWSMRYRF WPNNKSRMYL LENTGDFVRS NELQEGDFIV LYSDVKSGKY LIRGVKVRAA QELAKHKNGS PEKGGASEVK AEDGGCKEKS PHGVRRSRQE AASMNQMAVS I // ID M0YIR5_HORVV Unreviewed; 682 AA. AC M0YIR5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_69727.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_69727.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_69727.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_69727.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_69727.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_69727.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_69727.2; -. DR EnsemblPlants; MLOC_69727.2; MLOC_69727.2; MLOC_69727. DR Gramene; MLOC_69727.2; MLOC_69727.2; MLOC_69727. DR InParanoid; M0YIR5; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YIR5; baseline and differential. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 527 629 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 527 629 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 72493 MW; 7D0008FF6099FAD1 CRC64; MDASAGSSPP RHPQGSAPRR GKGPAVEIRH GEDDFMFAQD TFPALPDFPC LSSPSSSNFS SSSSSNSSSA FAAPAGVGGR GGEGTRGEPS EPAAAGDGVD DLSDIDHLLD FASINDDVPW DDEPLFPDVG MMLEDVISEQ QQQQQQHPLA GYGAGGRVAS DAAGGGGEDA FMGGGGSGSA ADDLPRFFME WLTNNRDCIS AEDLRSIRLR RSTIEAAAAR LGGGRQGTMQ LLKLILTWVQ NHHLQKKRPR VGAMDQEAPP AGGQLPSPGA NPSYEFPTET GAAAATSWMP YQAFSPTASY GGEAMYPFQQ GCSTSSVVVS SQPFSPPAAA DMHAGAWPLQ YAAFVPAGAT SAGTQTYPMP PPGPVPQPFA APGFAGQFPQ RMEPAATREA RKKRMARQRR LSCLQQQRSQ QLNLSQIQTG GFPQEPSPRA AHSAPVWGGH WSPPAVQAQP HGQLMIQVPN PLSTKSNSSR QKQQKPSPDA AARPPSGGAA SQQRQGQAAA SDKQRQQGAS RTAAAPPAGD KNLRFLLQKV LKQSDVGTLG RIVLPKKEAE THLPELKTGD GISIPIEDIG TSQVWSMRYR FWPNNKSRMY LLENTGDFVR SNELQEGDFI VLYSDVKSGK YLIRGVKVRA AQELAKHKNG SPEKGGASEV KAEDGGCKEK SPHGVRRSRQ EAASMNQMAV SI // ID M0YIR6_HORVV Unreviewed; 198 AA. AC M0YIR6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_69727.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_69727.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_69727.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_69727.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_69727.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_69727.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_69727.3; MLOC_69727.3; MLOC_69727. DR Gramene; MLOC_69727.3; MLOC_69727.3; MLOC_69727. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YIR6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 198 AA; 21690 MW; 9ED739D1A46040DC CRC64; LLPLPSIHRS PSRIESQAIA PQISGASRTA AAPPAGDKNL RFLLQKVLKQ SDVGTLGRIV LPKEAETHLP ELKTGDGISI PIEDIGTSQV WSMRYRFWPN NKSRMYLLEN TGDFVRSNEL QEGDFIVLYS DVKSGKYLIR GVKVRAAQEL AKHKNGSPEK GGASEVKAED GGCKEKSPHG VRRSRQEAAS MNQMAVSI // ID M0YIR7_HORVV Unreviewed; 125 AA. AC M0YIR7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_69727.4}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_69727.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_69727.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_69727.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_69727.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_69727.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_69727.4; MLOC_69727.4; MLOC_69727. DR Gramene; MLOC_69727.4; MLOC_69727.4; MLOC_69727. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YIR7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 125 AA; 14025 MW; 38E63ECE66D95F7D CRC64; MNGSSSLSID LGVDFLLDFS DFASVSIHGS SCLSADRSVA TKKCLFFHGW FQKEAETHLP ELKTGDGISI PIEDIGTSQV WSMRYRFWPN NKSRMYLLEN TGDFVRSNEL QEGDFIVLYS DVKSG // ID M0YNY9_HORVV Unreviewed; 146 AA. AC M0YNY9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_71305.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_71305.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_71305.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_71305.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_71305.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_71305.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_71305.1; MLOC_71305.1; MLOC_71305. DR Gramene; MLOC_71305.1; MLOC_71305.1; MLOC_71305. DR InParanoid; M0YNY9; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YNY9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16140 MW; 9DCACE2FD4AF0D1D CRC64; MVLQQGAGED DETTPLSGDR PFFTVVMCKT HVQKPYLLII PTHFQRRLPA RRTAVVLRCR GSSWIMSYSG HTKLKNLAAG WADFAIDNRL QVGDGCVFEL LSGDARDGGE GEVVLEVQVL RGHLPEPEDL TTKGESADEP MANYHC // ID M0YNZ0_HORVV Unreviewed; 137 AA. AC M0YNZ0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_71305.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_71305.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_71305.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_71305.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_71305.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_71305.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_71305.2; MLOC_71305.2; MLOC_71305. DR Gramene; MLOC_71305.2; MLOC_71305.2; MLOC_71305. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YNZ0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 137 AA; 15353 MW; 2B724A0D0D404117 CRC64; MIRCCNNCGS FILSWSCPEL LFFLRRNLQI IPTHFQRRLP ARRTAVVLRC RGSSWIMSYS GHTKLKNLAA GWADFAIDNR LQVGDGCVFE LLSGDARDGG EGEVVLEVQV LRGHLPEPED LTTKGESADE PMANYHC // ID M0YNZ1_HORVV Unreviewed; 120 AA. AC M0YNZ1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_71305.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_71305.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_71305.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_71305.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_71305.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_71305.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_71305.3; MLOC_71305.3; MLOC_71305. DR Gramene; MLOC_71305.3; MLOC_71305.3; MLOC_71305. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YNZ1; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 120 AA; 13348 MW; 153EA75A97BEA43A CRC64; MCKTHVQKPY LLIIPTHFQR RLPARRTAVV LRCRGSSWIM SYSGHTKLKN LAAGWADFAI DNRLQVGDGC VFELLSGDAR DGGEGEVVLE VQVLRGHLPE PEDLTTKGES ADEPMANYHC // ID M0YPA1_HORVV Unreviewed; 244 AA. AC M0YPA1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_71395.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_71395.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_71395.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_71395.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_71395.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_71395.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_71395.2; MLOC_71395.2; MLOC_71395. DR Gramene; MLOC_71395.2; MLOC_71395.2; MLOC_71395. DR InParanoid; M0YPA1; -. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YPA1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 244 AA; 27536 MW; 7B4B3CFF3A005E1B CRC64; MAVEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT CAPKTPSPMK HKRRRIIYAA TPVPSPPRRS RRLAHLPEVK YADACAEVGE ESERVGRWSP RRRSGSIYLA AGGPISMKAR MEAASKAEEL ESQLDPEFPS FMKRMLHSHV VRGFWLGLPS HFCDTYLPKN DCTITLVDEK DEEFESKYLA YKKGLSGGWA GFALDHVIRD GDSTVFQLIK PTTFKVHIIR ATVGDDDDEE EEAE // ID M0YPA2_HORVV Unreviewed; 128 AA. AC M0YPA2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_71395.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_71395.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_71395.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_71395.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_71395.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_71395.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_71395.3; MLOC_71395.3; MLOC_71395. DR Gramene; MLOC_71395.3; MLOC_71395.3; MLOC_71395. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YPA2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 128 AA; 14586 MW; 675A5DB195E489A8 CRC64; MKARMEAASK AEELESQLDP EFPSFMKRML HSHVVRGFWL GLPSHFCDTY LPKNDCTITL VDEKDEEFES KYLAYKKGLS GGWAGFALDH VIRDGDSTVF QLIKPTTFKV HIIRATVGDD DDEEEEAE // ID M0YUJ6_HORVV Unreviewed; 1077 AA. AC M0YUJ6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_73144.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_73144.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_73144.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_73144.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_73144.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_73144.1; MLOC_73144.1; MLOC_73144. DR Gramene; MLOC_73144.1; MLOC_73144.1; MLOC_73144. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YUJ6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 944 1028 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 81 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1077 AA; 120651 MW; 9821C67E8D6F17DB CRC64; MSSAQRHFAS NLTAWLPILF DMVRPRSRIL RRCCFLIFQA DPDTDEVYAQ MTLQPVNTYA KEALQLSELA LRQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPSL DFSLQPPCQE LQARDIHDNV WTFRHIFRGQ PKRHLLTTGW SLFVSGKKLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGVLAAAAHA SANTSPFTIF YNPRASPTEF VIPFAKYQKA MYSNQISLGM RFRMMCETEE LGTRRYMGTI TGISDLDPVR WKNSQWRSLQ VGWDESAAGE RRNRVSIWEI EPLAAPFFIC PQPFFGVKRP RQLDDESLEM ENLFKRAMPW LGEEVCIKDP QTQSATMPGL SLVQWMNMNR QQSSSLASTS MQSEYLRSAS NPAMQNIGAA DLARQLYMQN HILQQNSMQF NPPKLHQQMK PINDLSNAAL PLNQLGAIRN HQDQKQDQQR QQQSSIQAIP LSQAQAQTNI VQAQVILQNQ MQQQKQPPPS PTQNQHGASG QHLLQSHQLQ DQNLQMQQQQ LLLHQQLQQQ QQQQLNKLPG QLANLASQQT QLSDQELHLQ LLQKLQQQSL MSQSAVTLSR LPIIQEQQNF LVEMQQQLSN SHSLAQQQVM PQQDCRTSSL QTTQLPPPIQ QEQQQQKPSQ KQVAPTYVSE AAFPQISSTS VIPKTGNTMI VPGAAQSALT EEIPSCSTSP STANGSHLAQ PTIGRNEHCK ISTEKVPHST AQMSILTPIE AVSVTPVTTK ELPKLNNSVK SSAISSKLPN VVSGLQNFMN NALPTDNLET ASSATSLWPS QSDGLLHQGF ATSNFNQHQM FKDELPDVEI QGVDPSNSAL FGMNSDGPLG FPMETEGLLE NALDSVKYQN HFSTDDENNY RMQKDARQEI STSMVSQSFG QSDMAFNSID SAINDGALMN RNSWPPAAPP QRMRTFTKVY KRGAVGRSID IGRFSGYGEL NQALARMFGI EGQLEDRQRI GWKLVYTDHE DDVLLLGDDP WEEFVNCVKC IRILSPQEVQ KMSLDGDLGS NVLPNQACSS SDGGNTWKPR YDQNSGNPSI GPYDQFE // ID M0YUJ7_HORVV Unreviewed; 410 AA. AC M0YUJ7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_73144.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_73144.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_73144.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_73144.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_73144.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_73144.2; MLOC_73144.2; MLOC_73144. DR Gramene; MLOC_73144.2; MLOC_73144.2; MLOC_73144. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YUJ7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 410 AA; 45449 MW; 9FA97BAFEED4A091 CRC64; MAQSPASSAV VGASAPSEGE RKAPAINGEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RDEKQQLLLG IRRANRQPTN ISSSVLSSDS MHIGVLAAAA HASANTSPFT IFYNPRASPT EFVIPFAKYQ KAMYSNQISL GMRFRMMCET EELGTRRYMG TITGISDLDP VRWKNSQWRS LQVGFMNTIQ VLAVATVFFI HFSFSFTDLI LSDRLGGTSR LQEKGGTEYQ SGRSNRLLLP FSYVHSHFSV // ID M0YUJ9_HORVV Unreviewed; 1129 AA. AC M0YUJ9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_73144.4, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_73144.4} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_73144.4}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_73144.4} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_73144.4}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; M0YUJ9; -. DR STRING; 4513.MLOC_73144.4; -. DR EnsemblPlants; MLOC_73144.4; MLOC_73144.4; MLOC_73144. DR Gramene; MLOC_73144.4; MLOC_73144.4; MLOC_73144. DR InParanoid; M0YUJ9; -. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YUJ9; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 996 1080 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1129 AA; 125382 MW; 8B7DC5BC625E15A8 CRC64; MAQSPASSAV VGASAPSEGE RKAPAINGEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RDEKQQLLLG IRRANRQPTN ISSSVLSSDS MHIGVLAAAA HASANTSPFT IFYNPRASPT EFVIPFAKYQ KAMYSNQISL GMRFRMMCET EELGTRRYMG TITGISDLDP VRWKNSQWRS LQVGWDESAA GERRNRVSIW EIEPLAAPFF ICPQPFFGVK RPRQLDDESL EMENLFKRAM PWLGEEVCIK DPQTQSATMP GLSLVQWMNM NRQQSSSLAS TSMQSEYLRS ASNPAMQNIG AADLARQLYM QNHILQQNSM QFNPPKLHQQ MKPINDLSNA ALPLNQLGAI RNHQDQKQDQ QRQQQSSIQA IPLSQAQAQT NIVQAQVILQ NQMQQQKQPP PSPTQNQHGA SGQHLLQSHQ LQDQNLQMQQ QQLLLHQQLQ QQQQQQLNKL PGQLANLASQ QTQLSDQELH LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ NFLVEMQQQL SNSHSLAQQQ VMPQQDCRTS SLQTTQLPPP IQQEQQQQKP SQKQVAPTYV SEAAFPQISS TSVIPKTGNT MIVPGAAQSA LTEEIPSCST SPSTANGSHL AQPTIGRNEH CKISTEKVPH STAQMSILTP IEAVSVTPVT TKELPKLNNS VKSSAISSKL PNVVSGLQNF MNNALPTDNL ETASSATSLW PSQSDGLLHQ GFATSNFNQH QMFKDELPDV EIQGVDPSNS ALFGMNSDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYRMQKDARQ EISTSMVSQS FGQSDMAFNS IDSAINDGAL MNRNSWPPAA PPQRMRTFTK VYKRGAVGRS IDIGRFSGYG ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV KCIRILSPQE VQKMSLDGDL GSNVLPNQAC SSSDGGNTWK PRYDQNSGNP SIGPYDQFE // ID M0YUK1_HORVV Unreviewed; 1064 AA. AC M0YUK1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_73144.6, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_73144.6} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_73144.6}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_73144.6} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_73144.6}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_73144.6; MLOC_73144.6; MLOC_73144. DR Gramene; MLOC_73144.6; MLOC_73144.6; MLOC_73144. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YUK1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 996 1064 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1064 AA; 118264 MW; 68B0E6468AF778DD CRC64; MAQSPASSAV VGASAPSEGE RKAPAINGEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RDEKQQLLLG IRRANRQPTN ISSSVLSSDS MHIGVLAAAA HASANTSPFT IFYNPRASPT EFVIPFAKYQ KAMYSNQISL GMRFRMMCET EELGTRRYMG TITGISDLDP VRWKNSQWRS LQVGWDESAA GERRNRVSIW EIEPLAAPFF ICPQPFFGVK RPRQLDDESL EMENLFKRAM PWLGEEVCIK DPQTQSATMP GLSLVQWMNM NRQQSSSLAS TSMQSEYLRS ASNPAMQNIG AADLARQLYM QNHILQQNSM QFNPPKLHQQ MKPINDLSNA ALPLNQLGAI RNHQDQKQDQ QRQQQSSIQA IPLSQAQAQT NIVQAQVILQ NQMQQQKQPP PSPTQNQHGA SGQHLLQSHQ LQDQNLQMQQ QQLLLHQQLQ QQQQQQLNKL PGQLANLASQ QTQLSDQELH LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ NFLVEMQQQL SNSHSLAQQQ VMPQQDCRTS SLQTTQLPPP IQQEQQQQKP SQKQVAPTYV SEAAFPQISS TSVIPKTGNT MIVPGAAQSA LTEEIPSCST SPSTANGSHL AQPTIGRNEH CKISTEKVPH STAQMSILTP IEAVSVTPVT TKELPKLNNS VKSSAISSKL PNVVSGLQNF MNNALPTDNL ETASSATSLW PSQSDGLLHQ GFATSNFNQH QMFKDELPDV EIQGVDPSNS ALFGMNSDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYRMQKDARQ EISTSMVSQS FGQSDMAFNS IDSAINDGAL MNRNSWPPAA PPQRMRTFTK VYKRGAVGRS IDIGRFSGYG ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWE // ID M0YXE5_HORVV Unreviewed; 293 AA. AC M0YXE5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_74058.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_74058.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_74058.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_74058.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_74058.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_74058.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_74058.1; MLOC_74058.1; MLOC_74058. DR Gramene; MLOC_74058.1; MLOC_74058.1; MLOC_74058. DR InParanoid; M0YXE5; -. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 31554 MW; F143A2C6C75B4623 CRC64; MEFSPTAPAG GEESQRVCAS SSVVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPLDG AAAALAAEGS GGKGMVLSFE DRAGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VLFGRGVGDS AARGRLFIDF RRRRPAEAYS ATVAFPPPAT SSLSHRLPLL PSVPFCPWRR DFGFGSTYGV ASAASGSNRH VLFLRQQVPA AVVLKSVPVR AAASVLEPPT RPMPKRVRLF GVNLDSPDTE DGGACGVTPM VTSTLLQQLL PSPSSSTSST AGKERQCSLD LGL // ID M0YYY1_HORVV Unreviewed; 678 AA. AC M0YYY1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_74632.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_74632.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_74632.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_74632.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_74632.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_74632.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_74632.1; MLOC_74632.1; MLOC_74632. DR Gramene; MLOC_74632.1; MLOC_74632.1; MLOC_74632. DR InParanoid; M0YYY1; -. DR OMA; LASTWYS; -. DR OrthoDB; EOG093605MD; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YYY1; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 404 500 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 572 670 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 404 500 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 572 670 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 78474 MW; 26ACD33198309BC7 CRC64; MPPDQDHEQG NRSGHNIRSK SFQRCEGCDS HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ KFVQNFKGQI SEAIKLEAPD GNIYNVEAIK DLNKIVLGSG WGVFVRFYKL KAGYFLVFRY IGDSHFKVLI FDFGSCCEKE VFHVLMNCGP NAQEKDSRLD RSLLSERQCQ NAGSSNGESH RRCEHCDVHF YWHHMDDRQK HFLRLMVSDF RHEMNIPEKF VNNFRSRISK VMKLEAPDGN IYNIQVTNDL NKIVLRSGWT AFASAYELKE HDLLVFRYIG DSHFKVLIFD PSGREKQLFH IVMNHAPNVP DTGICHDPSF FRETRRRDCE SRDNNTRKTK KMTPLDSPSR RSAEGVTSPE DTMNSGIPPE TTEPRYVLAT GCNLTTAQKA QIDALVKKVR PVIPFYITAI NKTSMSGTLV ICKDYASKYL PHEDQFITLC HPRKSNIWLD HLKVTTDGSC MLSAGWSYFV LHNKLRESDV CVFEVSKSVG EMIMVVHSLE GDHHLQEKEP ESQNKCNYPV KGKANKEEES DKKHPKSKSN YYYSRYAEGL TGEEQEVIFR SVLIQQGNVV YVTVLGKNNV RSRRNSLTFP GNFAAKHLVE RSHDILLLRP NRRETWCARY YYHPKEQGFS YSPWTKFLRD NKLCEGHVCV FELMKGVSKA TMIVHVFTKV DGRFVLLD // ID M0YYY2_HORVV Unreviewed; 401 AA. AC M0YYY2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_74632.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_74632.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_74632.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_74632.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_74632.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_74632.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_74632.2; MLOC_74632.2; MLOC_74632. DR Gramene; MLOC_74632.2; MLOC_74632.2; MLOC_74632. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0YYY2; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 46113 MW; 6C10C2CAF024542A CRC64; MDDRQKHFLR LMVSDFRHEM NIPEKFVNNF RSRISKVMKL EAPDGNIYNI QVTNDLNKIV LRSGWTAFAS AYELKEHDLL VFRYIGDSHF KVLIFDPSGR EKQLFHIVMN HAPNVPDTGI CHDPSFFRET RRRDCESRDN NTRKTKKMTP LDSPSRRSAE GVTSPEDTMN SGIPPETTEP RYVLATGCNL TTAQKAQIDA LVKKVRPVIP FYITAINKTS MSGTLVICKD YASKYLPHED QFITLCHPRK SNIWLDHLKV TTDGSCMLSA GWSYFVLHNK LRESDVCVFE VSKSVGEMIM VVHSLEGDHH LQEKEPESQN KCNYPVKGKA NKEEESDKKH PKSKSNYYYS RYAEGLTGEE QEVIFRSVLI QQGNVVYVTV LGKNNVRSRR NSLDVPWKFR G // ID M0Z0M6_HORVV Unreviewed; 362 AA. AC M0Z0M6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_75135.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_75135.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_75135.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_75135.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_75135.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_75135.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_75135.1; MLOC_75135.1; MLOC_75135. DR Gramene; MLOC_75135.1; MLOC_75135.1; MLOC_75135. DR InParanoid; M0Z0M6; -. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z0M6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 116 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 174 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 174 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 362 AA; 39278 MW; 56EDC201D83897DC CRC64; MGMEILSSTV EHCSQYSSSA STATTESGAA GRSTTALSLP VAITDESVTS RSASAQPASS RFKGVVPQPN GRWGSQIYER HARVWLGTFP DQDSAARAYD VASLRYRGRD AATNFPCAAA EAELAFLTAH SKAEIVDMLR KHTYADELRQ GLRRGRGMGA RAQPTPSWAR VPLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLKCTAETTT TTGNGVLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSSF VREKGLGAGD SIVFSSSAYG QEKQLFINCK KNTTMNGGKT ALPLPVVETA KGEQDHVVKL FGVDIAGVKR VRAATGELGP PELFKRQSVA HGCGRMNYIC YSIGTIGPLM LN // ID M0Z282_HORVV Unreviewed; 193 AA. AC M0Z282; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_75723.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_75723.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_75723.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_75723.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_75723.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_75723.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_75723.1; MLOC_75723.1; MLOC_75723. DR Gramene; MLOC_75723.1; MLOC_75723.1; MLOC_75723. DR InParanoid; M0Z282; -. DR OMA; MIINEAM; -. DR OrthoDB; EOG09360P43; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z282; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 193 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 113 193 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 193 AA; 22244 MW; 1412D3DAD106526A CRC64; MADANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PKLQKRKASK PRDAADDAPP RRSGRIATLP EQPDYRDNVK LGTGKPRQQK EVKPDHAYAI AKAEELRDEL GSDYPTFVKT MPQSLTSLYI PAQFSMEHLP DRGMKLVLVD EEEEEFKVQY RPHSSSLVTG WSEFVMDNEL VEGDCLVFQL IRR // ID M0Z283_HORVV Unreviewed; 192 AA. AC M0Z283; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_75723.2}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_75723.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_75723.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_75723.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_75723.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_75723.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_75723.2; MLOC_75723.2; MLOC_75723. DR Gramene; MLOC_75723.2; MLOC_75723.2; MLOC_75723. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z283; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 192 AA; 22116 MW; 11E22CEA3826F98A CRC64; MADANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PKLKRKASKP RDAADDAPPR RSGRIATLPE QPDYRDNVKL GTGKPRQQKE VKPDHAYAIA KAEELRDELG SDYPTFVKTM PQSLTSLYIP AQFSMEHLPD RGMKLVLVDE EEEEFKVQYR PHSSSLVTGW SEFVMDNELV EGDCLVFQLI RR // ID M0Z284_HORVV Unreviewed; 77 AA. AC M0Z284; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_75723.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_75723.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_75723.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_75723.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_75723.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_75723.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_75723.3; MLOC_75723.3; MLOC_75723. DR Gramene; MLOC_75723.3; MLOC_75723.3; MLOC_75723. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z284; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 77 AA; 8992 MW; 3E896E4FDFB32482 CRC64; MPQSLTSLYI PAQFSMEHLP DRGMKLVLVD EEEEEFKVQY RPHSSSLVTG WSEFVMDNEL VEGDCLVFQL IRRALFK // ID M0Z3K5_HORVV Unreviewed; 231 AA. AC M0Z3K5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_76431.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_76431.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_76431.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_76431.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_76431.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_76431.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_76431.1; MLOC_76431.1; MLOC_76431. DR EnsemblPlants; MLOC_76431.2; MLOC_76431.2; MLOC_76431. DR Gramene; MLOC_76431.1; MLOC_76431.1; MLOC_76431. DR Gramene; MLOC_76431.2; MLOC_76431.2; MLOC_76431. DR OMA; EANDLEW; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z3K5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 231 AA; 26592 MW; 1021DBFFB7EF511F CRC64; MAGAIAYEEQ RRRQVEENKR KLEELKLHHL SAAVREAATP KPSPAKSVKR KRVPREDGED APVRRSGRVA SLPEQPKYRF EDVFHVLEKK IRRGSRKTTS TRSDLINRVY ATDVAREYAI AKAKELQAKL ESASFVRPMT QSHVTGGFWL SLPMPFCRKH LPKRDERLIL EDEQGVESET LYLAPKNGLS AGWRGFAIQH DLVDGDCLVF ELIDRTKFKV YIIRQSSYYE P // ID M0Z3K7_HORVV Unreviewed; 224 AA. AC M0Z3K7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_76431.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_76431.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_76431.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_76431.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_76431.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_76431.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_76431.3; MLOC_76431.3; MLOC_76431. DR Gramene; MLOC_76431.3; MLOC_76431.3; MLOC_76431. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z3K7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 135 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 25691 MW; 6D870C94498B1174 CRC64; MAGAIAYEEQ RRRQVEENKR KLEELKLHHL SAAVREAATP KPSPAKSVKR KRVPREDGED APVRRSGRVA SLPEQPKYRF EDVFHVLEKK IRRGSRKTTS TRSDLINRVY ATDVAREYAI AKAKELQAKL ESASFVRPMT QSHVTGGFWL SLPMPFCRKH LPKRDERLIL EDEQGVESET LYLAPKNGLS AGWRGFAIQH DLVDGDCLVF ELIDRTKFKG LHYQ // ID M0Z3S1_HORVV Unreviewed; 259 AA. AC M0Z3S1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_7649.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_7649.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_7649.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_7649.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_7649.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_7649.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_7649.1; MLOC_7649.1; MLOC_7649. DR EnsemblPlants; MLOC_7649.2; MLOC_7649.2; MLOC_7649. DR Gramene; MLOC_7649.1; MLOC_7649.1; MLOC_7649. DR Gramene; MLOC_7649.2; MLOC_7649.2; MLOC_7649. DR OMA; WNVEINR; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z3S1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 259 AA; 29390 MW; FBDA0EB6069F182A CRC64; MDVLEVFEFF EIILENSFSS QRLPDKFAKL LDGREPREVK LREAGSGRGS LWDVVVVFDA DGHMYLERGR KQFVRAHDLR LGHLLVFSYD GDAVLTVKVF DLSMCRRHYQ DDTSSGSSSD SSSDSTSSRS AEMDVDDAPT SQFAVTLSVC HFLGKQQQYL NVPLEFHEAH GYAKRSKVVL RMRGMDWAVN LKHNKRAGGK TRSTFRYGWH QFLVDNRLKV GDICFFRALR GNNAGRGGDD GDDHELKVQV RKLDGSFVD // ID M0Z3S3_HORVV Unreviewed; 127 AA. AC M0Z3S3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_7649.3}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_7649.3, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_7649.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_7649.3}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_7649.3} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_7649.3}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_7649.3; MLOC_7649.3; MLOC_7649. DR Gramene; MLOC_7649.3; MLOC_7649.3; MLOC_7649. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z3S3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 127 AA; 14465 MW; 7CFE1C9CDB02EFAB CRC64; MDVDDAPTSQ FAVTLSVCHF LGKQQQYLNV PLEFHEAHGY AKRSKVVLRM RGMDWAVNLK HNKRAGGKTR STFRYGWHQF LVDNRLKVGD ICFFRALRGN NAGRGGDDGD DHELKVQVRK LDGSFVD // ID M0Z594_HORVV Unreviewed; 336 AA. AC M0Z594; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_77380.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_77380.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_77380.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_77380.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_77380.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_77380.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_77380.1; MLOC_77380.1; MLOC_77380. DR Gramene; MLOC_77380.1; MLOC_77380.1; MLOC_77380. DR InParanoid; M0Z594; -. DR OMA; RMGDSMM; -. DR OrthoDB; EOG093608PM; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z594; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 75 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 240 333 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 75 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 240 333 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 38161 MW; 040D2E64ABD195CB CRC64; FVHRFKGEIP GEIELQTKNK CRYKIKVVKN QEEQLVLAAG WGRFIEKFSL QTRESIILFR YNGKSQFSVI ILDQLGREKA SSVVNPLPPR ALKRHTNCAE TVSQHPSDGH PLPVERLVQS TDAAANILRR PTQIAETADC SPPLKIMPST AQFDVHQQQQ AMLMQPPLNH SSSSSHDHVQ NALGFVRVVR RKYGLTSSQK KQRKDGYITT HRTKLTSAQE QQVKDMVQTI RSRIGDIIIF VALMGRANVL SGFSLTIPVR YGEEYFGDGK VICFQLGNKK WNVSFSTSRK DYRVETGWKK FVKDNCLKLG DICLFEPQSN QRSTMEVHII HVNDGN // ID M0Z5E1_HORVV Unreviewed; 703 AA. AC M0Z5E1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_77438.2, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_77438.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_77438.2}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_77438.2} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_77438.2}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4513.MLOC_77438.2; -. DR EnsemblPlants; MLOC_77438.2; MLOC_77438.2; MLOC_77438. DR Gramene; MLOC_77438.2; MLOC_77438.2; MLOC_77438. DR InParanoid; M0Z5E1; -. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR ExpressionAtlas; M0Z5E1; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 609 687 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 76029 MW; 114C40021EA17F00 CRC64; MITFADLTEP PPGAERRVDR QLWLACAGGM CTVPPVGCSV YYFPQGHAEH ALGLDAGADL SAARVPALVP CRVAAVLYMA DTHTDEVFAR ILLAPLGDTD ADGNVQDDAA VAADGEQEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVIAKDVHG TAWKFRHIYR GTPRRHLLTT GWSAFVNRKK LVAGDSIVFL RGDGGDLHVG IRRAKRGFRG AEEGSLSLTG WGRYYSGPMR GNASPCTRGK VRAEDVVEAA RLAGSGQPFE VVYFPRASTP EFCVRAAAVR AAMRVQWCPG MRFKMAFETE DSSRISWFMG TVAGVQVAHP TRWPQSPWRL LQVTWDEPDL LQNVKRVSPW LVEIVSSMPA MHLASFSPPR KKSRIPAYPE FPFEGQLLYP SFPLNPMAHG NRRHHRHTGS YHPSLSPFPD CSAPSGIQGA RHSQFGPFLS DLHLTHLQSR LMYPGLRCHD HVSPAPAPIA SRISTDLTIG SSPARNGVSS TMPASAKRPN DAKPPGLVLF GRTILTEQQM SRSNSAGVVS SPAAAGNSSL NWNTDKAGNA SPGSGSTVVQ NSGSTDNMSP ERPRRCRDNS HISELGLKPG QCKVFVESDT VGRNLDCSAM SSFEELYGRL SETFCIDGAE LRSRVLYRGA AGEVKHAGDE PFSEFIKSAR RLTIVTYAGS NNTGSLSAAA TNL // ID M0Z941_HORVV Unreviewed; 357 AA. AC M0Z941; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_7940.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_7940.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_7940.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_7940.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_7940.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_7940.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_7940.1; MLOC_7940.1; MLOC_7940. DR Gramene; MLOC_7940.1; MLOC_7940.1; MLOC_7940. DR InParanoid; M0Z941; -. DR OMA; MERNKAT; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 62 117 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 175 284 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 62 117 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 175 284 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 38815 MW; C41601031DFA45AA CRC64; MGVEILSSTG EHSSQYSSGA ASTATTESGV GGRPPTAPSL PVSIADESAT SRSASAQSTS SRFKGVVPQP NGRWGAQIYE RHARVWLGTF PDEDSAARAY DVAALRYRGR EAATNFPCAA AEAELAFLAA HSKAEIVDML RKHTYTDELR QGLRRGRGMG ARAQPTPSWA REPLFEKAVT PSDVGKLNRL VVPKQHAEKH FPLKRTPETT TTTGKGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKGLGAG DSIVFSCSAY GQEKQFFIDC KKNKTMTSCP ADDRGAATAS PPVSEPTKGE QVRVVRLFGV DIAGEKRGRA APVEQELFKR QCVAHSQHSP ALGAFVL // ID M0ZBQ6_HORVV Unreviewed; 327 AA. AC M0ZBQ6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_81102.1}; OS Hordeum vulgare subsp. vulgare (Domesticated barley). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum. OX NCBI_TaxID=112509 {ECO:0000313|EnsemblPlants:MLOC_81102.1, ECO:0000313|Proteomes:UP000011116}; RN [1] {ECO:0000313|EnsemblPlants:MLOC_81102.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Morex {ECO:0000313|EnsemblPlants:MLOC_81102.1}; RX PubMed=23075845; DOI=10.1038/nature11543; RG The International Barley Genome Sequencing Consortium; RT "A physical, genetic and functional sequence assembly of the barley RT genome."; RL Nature 491:711-716(2012). RN [2] {ECO:0000313|EnsemblPlants:MLOC_81102.1} RP IDENTIFICATION. RC STRAIN=subsp. vulgare {ECO:0000313|EnsemblPlants:MLOC_81102.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; MLOC_81102.1; MLOC_81102.1; MLOC_81102. DR Gramene; MLOC_81102.1; MLOC_81102.1; MLOC_81102. DR InParanoid; M0ZBQ6; -. DR OMA; QRWHTEL; -. DR OrthoDB; EOG09360I1Z; -. DR Proteomes; UP000011116; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 242 327 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 242 327 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37993 MW; C4A0EB005BE9DB1C CRC64; MSNFCECCNR YWTHLHGKVK CFVTHMDRHS RHIMVIPESF VYYFEWKLSG TIELEAPNGN VYDVGITERR NKTVLRSGWE AFVDANHIVK RDSLMFRYRG NRRFEVVVFN SSGCEKVVSC TARIQSNIND QERSTNSTDI STGFSYGNNH LLARRSDDCQ TGRSGYCRKR ARKDAISSRS EDLSENSLCE HESSESEDIE RIRIRPEQDD THPYIMTRYA RLTQLQKKKV LKKVEVIASD LHIYVAVITR ASVLGSLTFA TQYCDTYLRK GSRSLVFQTK GKRQQWHGEL HDNNRALRIT GGWTSFAKDN NLRNWDICLF ELMKNNG // ID M0ZGI1_SOLTU Unreviewed; 184 AA. AC M0ZGI1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400000314}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000314, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000314} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400000314}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000314} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000314}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400000314; PGSC0003DMT400000314; PGSC0003DMG400000106. DR Gramene; PGSC0003DMT400000314; PGSC0003DMT400000314; PGSC0003DMG400000106. DR InParanoid; M0ZGI1; -. DR OrthoDB; EOG09360TOV; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 184 AA; 21610 MW; B23D8EDE838129EF CRC64; MTTIRLFGND IKVSEKKEVK SIMLFGTRIF FQSPALNNNN NDRFINMADL PPRSMHLAIE SIRGSRPVYM GWKYLENSDI NANLSRFLIP VECCSKLIHY MTRLEREKIL NKDDRGINVS VMDPKGNLHD MKFTGWKSLG RLVFNRGWNN LVRDNQFQKG DLLELWHFRM PNNKPCFAIN IIRF // ID M0ZGI2_SOLTU Unreviewed; 184 AA. AC M0ZGI2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400000316}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000316, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000316} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400000316}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000316} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000316}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006339802.1; XM_006339740.1. DR EnsemblPlants; PGSC0003DMT400000316; PGSC0003DMT400000316; PGSC0003DMG400000107. DR GeneID; 102586532; -. DR Gramene; PGSC0003DMT400000316; PGSC0003DMT400000316; PGSC0003DMG400000107. DR KEGG; sot:102586532; -. DR InParanoid; M0ZGI2; -. DR OMA; CFAVNII; -. DR OrthoDB; EOG09360TOV; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 184 AA; 21425 MW; 4D48C93085E6C727 CRC64; MTTIRLFGND IKVIRLFGIQ ISPCPALKNN NMQLQLQLQR DDRFMNMPDS PPPSLRLAIQ SVQGSRSLYM GWKYLENSDI NINLSRFLIP AEWCAKLLLH MTQSESQKIQ SEDDRGINVS VMDPKGNSHD MKFTEWKSLK RLVFNRGWNK LVENNQLQKG NLLHLWHFRT PDNKPCFAVN IIRS // ID M0ZGK2_SOLTU Unreviewed; 339 AA. AC M0ZGK2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000344, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000344} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400000344}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000344} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000344}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400000344; PGSC0003DMT400000344; PGSC0003DMG400000118. DR Gramene; PGSC0003DMT400000344; PGSC0003DMT400000344; PGSC0003DMG400000118. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M0ZGK2; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 38451 MW; E9D414B9B301B219 CRC64; MGSEDLYRDL WKACAGPLVD VPRDAERVYY FPQGHIEQLE ASTNQAVNQQ IPQFNLSSKI LCRVVHVQLL AETETDEVYA QITLHPEAEQ EEPSKPDPCP PDLPKRTVHS FCKILTASDT STHGGFSVLR KHANECLPQL DMTQATPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDAFVFLRD DNGELRVGVR RLARQQSPIP QSVISSQSMH LGVLATASHA ITTQTRFVVY YKPRTSQFIV GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGT GDISSQWSES KWRSLKVKNM FGFIDGNVWH IHCLVLILV // ID M0ZGK3_SOLTU Unreviewed; 685 AA. AC M0ZGK3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000345, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000345} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400000345}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000345} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000345}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400000345; -. DR EnsemblPlants; PGSC0003DMT400000345; PGSC0003DMT400000345; PGSC0003DMG400000118. DR Gramene; PGSC0003DMT400000345; PGSC0003DMT400000345; PGSC0003DMG400000118. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR InParanoid; M0ZGK3; -. DR OMA; VYARITL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M0ZGK3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 570 662 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 76550 MW; 01AFA052DD5FA79A CRC64; MGSEDLYRDL WKACAGPLVD VPRDAERVYY FPQGHIEQLE ASTNQAVNQQ IPQFNLSSKI LCRVVHVQLL AETETDEVYA QITLHPEAEQ EEPSKPDPCP PDLPKRTVHS FCKILTASDT STHGGFSVLR KHANECLPQL DMTQATPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDAFVFLRD DNGELRVGVR RLARQQSPIP QSVISSQSMH LGVLATASHA ITTQTRFVVY YKPRTSQFIV GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGT GDISSQWSES KWRSLKIQWD EPASMVRPDR VSPWEIEPFV ASTCVDVAQP GIKSKRPRPL DLPRTEIAVA SAASPFWCPG SGPTLEVSHL GGITDVQSHD NQLFWSSKQN SCLSNGVSNT SCRTHLSGAW QHSMLANGSL NLLRDSIEDN KQLITRSALL DYGSPMSSKA SSGLLHDQVN RGNKREISSG CRLFGIDLRN NSNNTSTKAK EILGPNITSN CADEAPIVHD ESEIDKDQNV EHLNPSDEKK QVQLEALPKD TLKQGPTSSR TRTKVQMQGV RVGRAVDLTA LSGYDDLISE LEKIFDIKGE LCPRNKWEVV YTDDEGDMML VGDDPWLEFC NMVRRIFIYS SEEVKKMTPR CKLPILSLEG EGTMPSVDSE LKAEG // ID M0ZHP6_SOLTU Unreviewed; 230 AA. AC M0ZHP6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400000991}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000991, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000991} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400000991}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400000991} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400000991}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006353478.1; XM_006353416.2. DR EnsemblPlants; PGSC0003DMT400000991; PGSC0003DMT400000991; PGSC0003DMG400000368. DR GeneID; 102600055; -. DR Gramene; PGSC0003DMT400000991; PGSC0003DMT400000991; PGSC0003DMG400000368. DR KEGG; sot:102600055; -. DR eggNOG; ENOG410JFCN; Eukaryota. DR eggNOG; ENOG4111DJK; LUCA. DR InParanoid; M0ZHP6; -. DR OMA; ELCFALT; -. DR OrthoDB; EOG09360NZK; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 230 AA; 26162 MW; DB0A79754BD4C1AD CRC64; MVKLEKEDIE AALLLSWLKY VPVEPKIVEK SKRKLRRINK NETPELQISK SVKNSPSASG AGNPKRVRLS SNFNGREAAS SSRNSNPVPK RGRTLPSNLP GSLPKFPPIE NLRTLIGQCS NPFVKQLTNS DVDEHQGRLL LNNEYVRKQL LPLLNEKSED LTTGISVKTF DPMGKYCNMI FKTWGNHKTY LLLGSWKQFV QEHGLKESDR VTGWMFRHSR TGELCFALTW // ID M0ZJN6_SOLTU Unreviewed; 398 AA. AC M0ZJN6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400002125}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400002125, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400002125} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400002125}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400002125} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400002125}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006362535.1; XM_006362473.2. DR EnsemblPlants; PGSC0003DMT400002125; PGSC0003DMT400002125; PGSC0003DMG400000811. DR GeneID; 102584696; -. DR Gramene; PGSC0003DMT400002125; PGSC0003DMT400002125; PGSC0003DMG400000811. DR KEGG; sot:102584696; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; M0ZJN6; -. DR KO; K09287; -. DR OMA; KHTYLDE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 127 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 207 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 127 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 207 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 398 AA; 44806 MW; F1971B5DCE9AA557 CRC64; MEGSISSIDQ ESTTSDSLSI APAASSSTMI KSLTMIKPPP ESGLCRMGSG TSVIIDAENG VEAESRKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEENEAARAY DVAAQRFRGR DAVTNFKPLL ENQESDDMEI AFLNSHSKAE IVDMLRKHTY LDELEQSKRL FGFTKDGMIK RKDGQIISSF FGSTNDKVNC KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQNGNN SKGVLLNFED LNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFQRSTSGDK QLYIDFKAKN VGNTSVVVTN QVQVQIQVPQ VQMVRLFGVN ICKVPANVSN VVIDNNNNNN NNNNNNMTSW SGGKRRMEME LLTFESCRKK QRVIINAL // ID M0ZNK3_SOLTU Unreviewed; 148 AA. AC M0ZNK3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400004522}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400004522, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400004522} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400004522}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400004522} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400004522}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400004522; PGSC0003DMT400004522; PGSC0003DMG400001798. DR Gramene; PGSC0003DMT400004522; PGSC0003DMT400004522; PGSC0003DMG400001798. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 16468 MW; 05C84661E68D4D87 CRC64; MKQPEIESSG IPEIDNGEYW PLSGKPYVDL ILTKTGVKPI YSMYLPKKMT SELPSAGARA VSAVLTCGQK KWDMFYGGVK SGHKFSIEWR KFVDDNNLKE GDGLVFELLE CSASKIHFRV QILRGDFPAE LNPEDEEGAN SDNPILLG // ID M0ZNK4_SOLTU Unreviewed; 167 AA. AC M0ZNK4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400004523}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400004523, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400004523} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400004523}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400004523} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400004523}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006354559.1; XM_006354497.2. DR STRING; 4113.PGSC0003DMT400004523; -. DR EnsemblPlants; PGSC0003DMT400004523; PGSC0003DMT400004523; PGSC0003DMG400001798. DR GeneID; 102587947; -. DR Gramene; PGSC0003DMT400004523; PGSC0003DMT400004523; PGSC0003DMG400001798. DR KEGG; sot:102587947; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; M0ZNK4; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 167 AA; 18719 MW; 46BA30F15AE62E13 CRC64; MESRSSFERV SNHKHSYSTM KQPEIESSGI PEIDNGEYWP LSGKPYVDLI LTKTGVKPIY SMYLPKKMTS ELPSAGARAV SAVLTCGQKK WDMFYGGVKS GHKFSIEWRK FVDDNNLKEG DGLVFELLEC SASKIHFRVQ ILRGDFPAEL NPEDEEGANS DNPILLG // ID M0ZQW9_SOLTU Unreviewed; 1106 AA. AC M0ZQW9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400006150, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400006150} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400006150}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400006150} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400006150}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400006150; PGSC0003DMT400006150; PGSC0003DMG400002392. DR Gramene; PGSC0003DMT400006150; PGSC0003DMT400006150; PGSC0003DMG400002392. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M0ZQW9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 75 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 979 1072 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 75 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 472 506 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1106 AA; 124625 MW; 342961DB62D06DB3 CRC64; MNSELWHACA GPLVSLPPVG SLVVYFPQGH SEQADTETDE VYAQMTLQPV NKYDQEALLL SDMGLKQNRQ PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDYAMQP PAQELMARDL HDQAWTFRHI YRGQPKRHLL TTGWSVFISS KRLCAGDSVL FIRDDKSQLL LGIKRTNRQQ PALSSSVISS DSMHIGILAA AAHAAANNSP FTIFYNPRAS PSEFVIPLAK YNKAMYAQVS LGMRFRMMFE TEESGVRRYM GTITGVSDLD PIRWKSSEWR NLQVGWDEST AGERPSRVSI WDIEPVVTPF YICPPPFFRP KFPKQPNFPG DESDIENVLK RGMPWINDEL GLKDSQNSIF PGLSLVQWMS MQQNNHVPVA QSGLPSVLHS NIGSDDHSKL LNFQSPTLAT PGLQFNKPNQ LNQPFGQIQQ PPLAWAQQQQ QSLQSPVSAQ QQQPTLQQQQ QQHTLQQQQP TLQQQQHTLQ QQQHTLQQQQ QQQQQQQHTL QQQQQQQHTL QQQQQQHTLQ QQQQQQHTLQ HQQQHTLQQS QQHMLQQQPQ LHQQAQQQLQ QQQRPSQQQQ LTGNSSPVNR CVSPNQIPNQ TFPQAAVYGQ LQQQQVLSAS TQSQQNVPVN RNPFPSTSLA QDFQFQQQVE QQSNLLQKSQ QQQTIPQQVP LQLLQQSLMQ RPQVQPSSQQ SLTEQQLQLQ LLNKLQQQQQ QQQQQAQLLS PVSSTLEPRM PQQQQNRQPQ ELQIAHQQLS SNIVTTATHL QSTHHAFNQL QSQHKSPITI KALSGGTDGD APSCSTSPST NNFQVSPPNF LTKNQGQAIL VDESVVDPSQ EQNKSEFRIK HELVFSKGSE QSKYKGNNTE NLEAASSTTS YGLDSSGFNF SLPALCVDGD VQSHSRNSLP SAANNIDGLN PDALLSRDYD SGKDMQNLFS PFGNAPRDIE TELSDAGINS QQFGVPNMAY KPRCTNDLAV NDNGVLNNNA WTNQTQRMRT YTKVQKRGSV GRTIDVTRYI GYDELRHDLA RMFGIEGQLE DPQRTEWKLV YVDHENDMLL VGDDPWEEFV SCVQSIKILS SAEVQQMSLD GDLGNVPVPN QASSGTDSGN AWKGHYDDNS AASFNR // ID M0ZQX0_SOLTU Unreviewed; 1157 AA. AC M0ZQX0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400006151, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400006151} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400006151}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400006151} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400006151}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006353789.1; XM_006353727.2. DR ProteinModelPortal; M0ZQX0; -. DR STRING; 4113.PGSC0003DMT400006151; -. DR EnsemblPlants; PGSC0003DMT400006151; PGSC0003DMT400006151; PGSC0003DMG400002392. DR GeneID; 102594021; -. DR Gramene; PGSC0003DMT400006151; PGSC0003DMT400006151; PGSC0003DMG400002392. DR KEGG; sot:102594021; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; M0ZQX0; -. DR KO; K14486; -. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M0ZQX0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1030 1123 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 523 557 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1157 AA; 130147 MW; 91AADB2A0B0CD7AE CRC64; MKAPSNGYLP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYAMQ PPAQELMARD LHDQAWTFRH IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDDKSQL LLGIKRTNRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF ETEESGVRRY MGTITGVSDL DPIRWKSSEW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPNFP GDESDIENVL KRGMPWINDE LGLKDSQNSI FPGLSLVQWM SMQQNNHVPV AQSGLPSVLH SNIGSDDHSK LLNFQSPTLA TPGLQFNKPN QLNQPFGQIQ QPPLAWAQQQ QQSLQSPVSA QQQQPTLQQQ QQQHTLQQQQ PTLQQQQHTL QQQQHTLQQQ QQQQQQQQHT LQQQQQQQHT LQQQQQQHTL QQQQQQQHTL QHQQQHTLQQ SQQHMLQQQP QLHQQAQQQL QQQQRPSQQQ QLTGNSSPVN RCVSPNQIPN QTFPQAAVYG QLQQQQVLSA STQSQQNVPV NRNPFPSTSL AQDFQFQQQV EQQSNLLQKS QQQQTIPQQV PLQLLQQSLM QRPQVQPSSQ QSLTEQQLQL QLLNKLQQQQ QQQQQQAQLL SPVSSTLEPR MPQQQQNRQP QELQIAHQQL SSNIVTTATH LQSTHHAFNQ LQSQHKSPIT IKALSGGTDG DAPSCSTSPS TNNFQVSPPN FLTKNQGQAI LVDESVVDPS QEQNKSEFRI KHELVFSKGS EQSKYKGNNT ENLEAASSTT SYGLDSSGFN FSLPALCVDG DVQSHSRNSL PSAANNIDGL NPDALLSRDY DSGKDMQNLF SPFGNAPRDI ETELSDAGIN SQQFGVPNMA YKPRCTNDLA VNDNGVLNNN AWTNQTQRMR TYTKVQKRGS VGRTIDVTRY IGYDELRHDL ARMFGIEGQL EDPQRTEWKL VYVDHENDML LVGDDPWEEF VSCVQSIKIL SSAEVQQMSL DGDLGNVPVP NQASSGTDSG NAWKGHYDDN SAASFNR // ID M0ZSM9_SOLTU Unreviewed; 237 AA. AC M0ZSM9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400007198}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400007198, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400007198} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400007198}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400007198} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400007198}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400007198; PGSC0003DMT400007198; PGSC0003DMG400002784. DR Gramene; PGSC0003DMT400007198; PGSC0003DMT400007198; PGSC0003DMG400002784. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M0ZSM9; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 136 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26992 MW; 8C88C3E761A57A0D CRC64; MFGYNARSHF NVTIFDFSAA EIEYPPAEIE SDDSIDILDV VEHSSEYLSY DPVVQERKRI RQEGEEEDDI PVEHQTNVID EEEFQGNVVS LVISEDCEEH EQQSNIVTSK RKAERDEGIA DNYQRAKAFK SKNPFIVSFM HPSYVSRPHA LYIPLKFARM YFMGNSGNLV LRVPGKGSWP VKCIMLRKDA KVTCGWKAFV LDNKLKYGDV CVLEVINDTK LSLIDVTIFP GISDGTN // ID M0ZSN0_SOLTU Unreviewed; 333 AA. AC M0ZSN0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400007199}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400007199, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400007199} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400007199}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400007199} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400007199}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006344812.1; XM_006344750.2. DR EnsemblPlants; PGSC0003DMT400007199; PGSC0003DMT400007199; PGSC0003DMG400002784. DR GeneID; 102595417; -. DR Gramene; PGSC0003DMT400007199; PGSC0003DMT400007199; PGSC0003DMG400002784. DR KEGG; sot:102595417; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR InParanoid; M0ZSN0; -. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M0ZSN0; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 38295 MW; BF5FC05FBA880D95 CRC64; MVHKFRKQIG EVSSISNISQ PKFCKIIFSP HELCRLRIPK GFASRYCKNI LNPVYLEVPS GEVWEVELEH SEGHIWLAEG WKDFSDYYSI RRGNFFMFGY NARSHFNVTI FDFSAAEIEY PPAEIESDDS IDILDVVEHS SEYLSYDPVV QERKRIRQEG EEEDDIPVEH QTNVIDEEEF QGNVVSLVIS EDCEEHEQQS NIVTSKRKAE RDEGIADNYQ RAKAFKSKNP FIVSFMHPSY VSRPHALYIP LKFARMYFMG NSGNLVLRVP GKGSWPVKCI MLRKDAKVTC GWKAFVLDNK LKYGDVCVLE VINDTKLSLI DVTIFPGISD GTN // ID M0ZSN1_SOLTU Unreviewed; 328 AA. AC M0ZSN1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400007200}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400007200, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400007200} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400007200}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400007200} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400007200}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400007200; PGSC0003DMT400007200; PGSC0003DMG400002785. DR Gramene; PGSC0003DMT400007200; PGSC0003DMT400007200; PGSC0003DMG400002785. DR InParanoid; M0ZSN1; -. DR OMA; RSMVIIK; -. DR OrthoDB; EOG093615IH; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 228 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 228 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 328 AA; 37579 MW; 863D19D023BD1316 CRC64; MVNKFHGSSF RNSSPNNPKF IQIIASTDDL CRLRIPVVFA ERHCKNMLNP VFLEAPHGKA WEVEVENSQD QIWLAKGWKD FCGYYSISIR SLLVFTYNPR SHFDVAIYDH SKTEIEYPID QEIESDEEEE DIPVLQANAN VIEEDIPVNL QTNANVIEEE EEDLPVNLQT NANVIEQEIS EGYEEHDQRN NPTLVPVNQE DGEANSRSGE VGPKNSSRYS FVNLNGDNPY FEMVIKKAHA TYMTIPMRFA QSTDIINMKN MRLVNEEGVE WGVEIEYNRS MVIIKGGWTA FRKDNKIANG ETCRFKLIRG HIANVLQVQK IPTPLSLQ // ID M0ZWQ8_SOLTU Unreviewed; 929 AA. AC M0ZWQ8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400009660, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400009660} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400009660}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400009660} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400009660}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006342026.1; XM_006341964.2. DR STRING; 4113.PGSC0003DMT400009660; -. DR EnsemblPlants; PGSC0003DMT400009660; PGSC0003DMT400009660; PGSC0003DMG400003771. DR GeneID; 102590158; -. DR Gramene; PGSC0003DMT400009660; PGSC0003DMT400009660; PGSC0003DMG400003771. DR KEGG; sot:102590158; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; M0ZWQ8; -. DR KO; K14486; -. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 816 900 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 929 AA; 102940 MW; EBD688F7F2061EA2 CRC64; MGSVEEKNKP GSLVSGAHTL LEEMKLLKGM QDHTGGGRKH ISSELWHACA GPLVTLPQVG SLVYYFPQGH SEQVAVSTNR TATSQIPNYP NLASQLLCQV HNVTLHADKE TDEIYAQMSL QPVNSEKDVF PIPDFGLKPN KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSM QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ LLLGVRRANR QQTSLPSSVL SADSMHIGVL AAAAHAAANR STFTIFYNPR ACPSEFVIPL AKYRKSVYNT QLSVGMRFGM MFETEESGKR RYMGTISGIS DLDPLRWPGS KWRCLQVEWD EPGCGDKQNR VSPWEVETPE SLFIFPSLTA GLKRPYQSTF LGAPTEWDSL MQHRPFMRVP ENVYGDLQSS SISNLWSEQL MKMLIRPPPG LTGLQCGVPT VQDIKVALPQ EARNVIQPAG NQKPELITVE ATPAQSETNS EVILNQPVGV VNSISSQQAT LQAKSQPLEK VETDVIGKSY EPRKETCNSS VKLDQFQCNE DKVTIKPASP HDLPTASATA SHHNSFSQLQ ATPWLIPHNP QIDSAGSNNI LQCPTNNEWN LSSLQSAAGL LRYPVSTSTL TKHDNSFMLP DTIGHGLAPI GQDLWDHQLN DVKCFSQTNL QVPLDITNMQ FLPDSYDFKD LSEESHNQSD IYSCLNFDSN SGSTVIDNSV SSTVLDEFCN LKHTDFQNPS DFLLGNISSS QDVQSQITSA SLADSQNFSV QEFADNSGGA SSSNVNFDEC NLLQNSSWQQ VAPRVRTFTK IQKTGSVGRS IDVSGFKNYE ELRSEIERMF GLEGLLNDTR GSSWKLVYVD FEHDVLLVGD DPWEEFVGCV RCIRILSPTE VQQMGEEGMQ LLNSAGLQGI NGSTSEFPN // ID M1A593_SOLTU Unreviewed; 300 AA. AC M1A593; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400015010}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015010, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015010} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400015010}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015010} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015010}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400015010; PGSC0003DMT400015010; PGSC0003DMG400005856. DR Gramene; PGSC0003DMT400015010; PGSC0003DMT400015010; PGSC0003DMG400005856. DR eggNOG; ENOG410JBK3; Eukaryota. DR eggNOG; ENOG4111BY3; LUCA. DR InParanoid; M1A593; -. DR OMA; PFSGHAT; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 34275 MW; 5085785987DB9045 CRC64; MNLFNSTIRE EASASSYHNQ QHKRPSSSTE LMLMDSSTSD AMIEREHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS SNDKGGLLLN FEDSNGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGAG ELSKHRLFID WRRRPHENIN NQFMIPHQFS DGRIFPLQSY PTTFSRNLLV EGGSNYYNPS HSYYMYGIGN SSTSPYYSFN NNTSVAVNAS PFDNNLMKST APQGYTSVVE PRVVFNSVPV VQGKVTAKRF RLFGVNMDYP MPSEESSEKG KSSMSFDLDI // ID M1A594_SOLTU Unreviewed; 313 AA. AC M1A594; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400015011}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015011, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015011} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400015011}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015011} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015011}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006352221.1; XM_006352159.2. DR EnsemblPlants; PGSC0003DMT400015011; PGSC0003DMT400015011; PGSC0003DMG400005857. DR GeneID; 102603967; -. DR Gramene; PGSC0003DMT400015011; PGSC0003DMT400015011; PGSC0003DMG400005857. DR KEGG; sot:102603967; -. DR eggNOG; ENOG410JBK3; Eukaryota. DR eggNOG; ENOG4111BY3; LUCA. DR InParanoid; M1A594; -. DR OMA; EIRWGGC; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 35747 MW; A2D3AB3CB173C8D8 CRC64; MNFFGSVVRE EASSSSYHNQ QLKRPSSTTE LTLMDSSTSD AMIEREHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS SNDKGGLLLN FEDSNGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGAG ELSKHRLFID WRRRPHENIN NQFMMPHQFS DGRLFHLQSY YPTTYSSNLL FEGGSNIGQP PNYYNPHSYM YGIGNLSYNM SNSAVINANP LNNEIRWGGC SNTSNYVEPR VFDSVPVVQG KVAAKRFRLF GVNMDCPMDH PDTSSIPTTT YNSHLNNNSE ESSEKGKSFD LDI // ID M1A5E6_SOLTU Unreviewed; 229 AA. AC M1A5E6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400015079}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015079, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015079} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400015079}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015079} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015079}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400015079; PGSC0003DMT400015079; PGSC0003DMG400005893. DR Gramene; PGSC0003DMT400015079; PGSC0003DMT400015079; PGSC0003DMG400005893. DR eggNOG; ENOG410JKB4; Eukaryota. DR eggNOG; ENOG41113KV; LUCA. DR InParanoid; M1A5E6; -. DR OMA; RSWRVVI; -. DR OrthoDB; EOG09360N6X; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 129 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 129 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 229 AA; 26687 MW; 87F7C6AD36827D29 CRC64; KIPSRFLENF NGDIPVIYLL EVEGSARRSW RVVIERIEED FYFKGGWPKF VQDNNLDNED FLNFFYAGNS TFFVKVYGKN GYLKQELNAI EELELHPLDE VNPHEIQVAS PLADEELDGS ENSLVSVTLF EIVMKKSNFS KMLLNLPSTF GKKYMKRGQV FEKMATLQTD GKSWPVVARS SDRLKFRKGW RQFLQDNDLH VGDVLRFKLI DEENFILKVL IRRNPSHVS // ID M1A5L9_SOLTU Unreviewed; 253 AA. AC M1A5L9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400015191}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015191, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015191} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400015191}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400015191} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400015191}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006361103.1; XM_006361041.2. DR RefSeq; XP_015170626.1; XM_015315140.1. DR EnsemblPlants; PGSC0003DMT400015191; PGSC0003DMT400015191; PGSC0003DMG400005934. DR GeneID; 102579492; -. DR Gramene; PGSC0003DMT400015191; PGSC0003DMT400015191; PGSC0003DMG400005934. DR KEGG; sot:102579492; -. DR eggNOG; ENOG410J303; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; M1A5L9; -. DR OMA; CYDGAGA; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 157 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 157 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 253 AA; 29095 MW; 7E1C55A7703103A6 CRC64; MVTPVEHVSI PHDLPEFFKI FHPEICYPQL RIPPAFIKFF NGDIPSICVL EDLAARTWKV VVKRNDGDFF FMESWPDFVL DNNLEYGDFL TFSYTGNSKF YVKIYGKNGC LKQDVTALKE PDLLPLVEEN ARGKSIVAEP ADQTDNGSGD MAASVTSFEI VIKASHLNRA RLNLPAPFGN CYLKRKQRPL RATLRTDSGS WTIVPQYYDR LELREGMQKF IDDNALRVND VCRFKLIDDE KLILKVRIKR QPK // ID M1ABV4_SOLTU Unreviewed; 371 AA. AC M1ABV4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400019296}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400019296, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400019296} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400019296}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400019296} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400019296}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006366067.1; XM_006366005.2. DR EnsemblPlants; PGSC0003DMT400019296; PGSC0003DMT400019296; PGSC0003DMG400007458. DR GeneID; 102588131; -. DR Gramene; PGSC0003DMT400019296; PGSC0003DMT400019296; PGSC0003DMG400007458. DR KEGG; sot:102588131; -. DR InParanoid; M1ABV4; -. DR KO; K09287; -. DR OMA; DELEHAK; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 118 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 201 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 118 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 201 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 371 AA; 42280 MW; 3176A2937803E051 CRC64; MEVSCIDQEI STTSDSPSTI FPAERPRQMG SGVSVILDAD STNGVEAESK NNTSNNNKLP SSKFKGVVPQ PNGRWGAQIY EKHQRIWLGT FNGEEEAAKA YDIAAQRFRG RDAVTNFKPL FDKYCQTEEI EISFLNSRSK VEIVDMLRKH TYNDELEHAK KVYNINNFEK NGRRTCHTND IATFSLDANE KVANIARELL FEKAVTPSDV GKLNRLVIPK QHAERYFPLV AKVNGNGNTS NGELLNFEDM NGKMWRFRYS YWNSSQSYVL TKGWSRYVKE NKLKAGDIVS FKRSFGVGVE DKQLFIDSKT RIIRSEQVKV VRLFGVNICK VQDVSNNVVV EKNMSVGKRM REMELLAFEC SKKQRVIIDA L // ID M1ADZ4_SOLTU Unreviewed; 239 AA. AC M1ADZ4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400020700}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020700, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020700} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400020700}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020700} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020700}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006354900.1; XM_006354838.2. DR STRING; 4113.PGSC0003DMT400020700; -. DR EnsemblPlants; PGSC0003DMT400020700; PGSC0003DMT400020700; PGSC0003DMG400008022. DR GeneID; 102603195; -. DR Gramene; PGSC0003DMT400020700; PGSC0003DMT400020700; PGSC0003DMG400008022. DR KEGG; sot:102603195; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; M1ADZ4; -. DR OMA; HYERVMI; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 239 AA; 27157 MW; 3B6B733157F3DCD3 CRC64; MVKYEDLRKQ RLEENKKRME ELNLPLLTQA LKNSTSPKTT PMKKTKPRIV GTELVAVRRS PRVAKSPAPE YKEVIHYERV MIPRRLATPT KRDRLFFAYA SDEERAASIE KAEKLEASLG SEYPILVRPM LPSHVSGGFW LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKCGL SGGWKRFSVD HDLADGDTIV FHLIRPTKFK AYIIRVNNAN ETASTEISTS TSTSSSEAF // ID M1AE59_SOLTU Unreviewed; 785 AA. AC M1AE59; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020838, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020838} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400020838}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020838} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020838}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400020838; PGSC0003DMT400020838; PGSC0003DMG400008065. DR Gramene; PGSC0003DMT400020838; PGSC0003DMT400020838; PGSC0003DMG400008065. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AE59; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 657 741 PB1. {ECO:0000259|PROSITE:PS51745}. SQ SEQUENCE 785 AA; 87436 MW; A1FC40430931BFE2 CRC64; MEFDLNHALV SEVEKNVCCN EECDKGGGGG CVNCSLYTST TSSCSSNVSS SSSLALTSIY KELWHACAGP LTSLPKKGNV VVYFPQGHME EAVSAFPFSP IKIDFPTFGL QPQIFCRVED VQLLANKEND EVYTQLTLLP LPESMAISLE GKEHEDSGTD EEGNGVNPGK SASHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKEQ RPSQELIAKD LHGVEWKFRH IYRDEPCRGE GGDLRLGIRR AARPRNGLPE SIIKSQYSGP DVLSSVASAL SAKSTFHVFY SPRASHADFV VPYQKYVKAI NTRIPVGTRF KMKFDLDDSP ERRYSGVVTG ISDMDPFRWP NSKWRCLMVR WDEDIMSNHQ ERVSPWEIDS SVSLPPLSIQ SSPRLKKLRT SQQAPSVLDG HFAGGSALLD FEESIRSSKV LQGQENLGLI SPPYGCDKPV RPLDFELQRV ARHNLMPNGV ENIIVGDFVK TQPPTTYTGF LESNRFPKVL QGQEICSLRS LTGKGDVNFG AWGKPEFGCN VFGTYQRPRA NFYPLASEGA RNVFLPYNAM YRAGQDPVVP SYITTFQREN PTLNQNSIQN VVRREEVGMP KFVNEQRPPE MSKVSIPENH FKNENDGSFN AQASCKLFGF SLTKEPSTPS SQSSGKRSCT KVHKQGSLVG RAIDLSRLNG YDDLLVELER LFNMEDLLRD PNKGWRILYT DSENDMMVVG DDPWHEFCEV VSKIHIYTQE EVEKMTIEGI SDDTQSCLEE APAIMDVSKS SSVGQPDSSP TVIRI // ID M1AE60_SOLTU Unreviewed; 811 AA. AC M1AE60; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020839, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020839} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400020839}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020839} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020839}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006340145.1; XM_006340083.2. DR STRING; 4113.PGSC0003DMT400020839; -. DR EnsemblPlants; PGSC0003DMT400020839; PGSC0003DMT400020839; PGSC0003DMG400008065. DR GeneID; 102602099; -. DR Gramene; PGSC0003DMT400020839; PGSC0003DMT400020839; PGSC0003DMG400008065. DR KEGG; sot:102602099; -. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR InParanoid; M1AE60; -. DR OMA; QSHANPV; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AE60; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 176 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 683 767 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 176 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 90315 MW; 030D7036B4D8E38B CRC64; MEFDLNHALV SEVEKNVCCN EECDKGGGGG CVNCSLYTST TSSCSSNVSS SSSLALTSIY KELWHACAGP LTSLPKKGNV VVYFPQGHME EAVSAFPFSP IKIDFPTFGL QPQIFCRVED VQLLANKEND EVYTQLTLLP LPESMAISLE GKEHEDSGTD EEGNGVNPGK SASHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKEQ RPSQELIAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGEGGDL RLGIRRAARP RNGLPESIIK SQYSGPDVLS SVASALSAKS TFHVFYSPRA SHADFVVPYQ KYVKAINTRI PVGTRFKMKF DLDDSPERRY SGVVTGISDM DPFRWPNSKW RCLMVRWDED IMSNHQERVS PWEIDSSVSL PPLSIQSSPR LKKLRTSQQA PSVLDGHFAG GSALLDFEES IRSSKVLQGQ ENLGLISPPY GCDKPVRPLD FELQRVARHN LMPNGVENII VGDFVKTQPP TTYTGFLESN RFPKVLQGQE ICSLRSLTGK GDVNFGAWGK PEFGCNVFGT YQRPRANFYP LASEGARNVF LPYNAMYRAG QDPVVPSYIT TFQRENPTLN QNSIQNVVRR EEVGMPKFVN EQRPPEMSKV SIPENHFKNE NDGSFNAQAS CKLFGFSLTK EPSTPSSQSS GKRSCTKVHK QGSLVGRAID LSRLNGYDDL LVELERLFNM EDLLRDPNKG WRILYTDSEN DMMVVGDDPW HEFCEVVSKI HIYTQEEVEK MTIEGISDDT QSCLEEAPAI MDVSKSSSVG QPDSSPTVIR I // ID M1AE84_SOLTU Unreviewed; 699 AA. AC M1AE84; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020874, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020874} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400020874}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400020874} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400020874}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006340187.1; XM_006340125.2. DR RefSeq; XP_006340188.1; XM_006340126.2. DR STRING; 4113.PGSC0003DMT400020874; -. DR EnsemblPlants; PGSC0003DMT400020874; PGSC0003DMT400020874; PGSC0003DMG400008081. DR GeneID; 102586871; -. DR Gramene; PGSC0003DMT400020874; PGSC0003DMT400020874; PGSC0003DMG400008081. DR KEGG; sot:102586871; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; M1AE84; -. DR OMA; RNDNISC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 668 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77253 MW; 4D79E11A2FE7C7A3 CRC64; MKEVLEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLMNVDFSA LPRSPALILC RVAAVKFLAD PETDEVYAKI RVVPVGNKGN DFDDDDDILG SNESGTTEKP NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVTAKDVHG ETWKFRHIYR GTPRRHLLTT GWSSFVNQKK LVAGDSIVFL RGENGELYVG IRRAKRGGIG GPEAPSGWNS GAGNYGGFSA FLREEMSKNG NLSSPTGSLR GKVRVRPESV VEAAYLAASG QPFEVVYYPR ANTPEFCVRA SSVNTAMRTQ WCSGMRFKMA FETEDSSRIS WFMGTISSIQ LADPIRWPNS PWRLLQVAWD EPDLLQNVKH VSPWLVELVS NMPVIHHSPF SPPRKKLRLP PDFSLDSQFQ LPFFSGNPLR SSSPFCCLSD NITAGIQGAR HAQFGVPLLD LHLSNNLPSG LLPPSFQRVA ANSQLPNVIN KYQNDRNDNI SCLLTMGTSS KTLEKNDSVN TPRFLLFGQP ILTEQQISNG CSVTAPQVVQ TGKDLGRIQL INEKHPPEQK GSIQDNLTSA TFFWNRGYHA AELGVLDTGH CKVFLESEDV GRTLDLSVMG SYEELYRRLA KMFGLERPDM LTRVLYHDAT GAVKHTGDEP FSDFVKSAKR LTILMNSSSN IKRKWITGLA TAERGLDSSN QAGPLSIFA // ID M1AHQ9_SOLTU Unreviewed; 335 AA. AC M1AHQ9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400023077}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400023077, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400023077} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400023077}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400023077} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400023077}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400023077; -. DR EnsemblPlants; PGSC0003DMT400023077; PGSC0003DMT400023077; PGSC0003DMG400008936. DR Gramene; PGSC0003DMT400023077; PGSC0003DMT400023077; PGSC0003DMG400008936. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; M1AHQ9; -. DR OMA; LECEADD; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AHQ9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 335 AA; 37223 MW; C36A1D656FD05E70 CRC64; MSNNTHNEHD DELGQSEDKL EEIPRDHLFE KPLTPSDVGK LNRLVIPKQH AEKYFPLSGN NNNNTNNNDG GTEKGLLLSF EDESGKSWRF RYSYWNSSQS YVLTKGWSRF VKEKRLDAGD IVLFDRHRSE SDRLFIGWRR RNTVSASTSI STPAAVHNTA AAAVTRNMGG GGGGGGWAHV YYGGHPYPSA GAGLLYQPDC LHAGGGAMPN QTTSVNNNTR RHVRLFGVNL ECEADDSSWS EPPPTPDGGG SSTSSHNQDH GRSQDQASQH YYQYQFQYSK PHVTVSAAAS SYNNNHHNHK STLVVTTKNQ VLLYHQTKLF AIQEYLEITP NTSKT // ID M1AHR0_SOLTU Unreviewed; 325 AA. AC M1AHR0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400023078}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400023078, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400023078} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400023078}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400023078} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400023078}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006341227.1; XM_006341165.2. DR EnsemblPlants; PGSC0003DMT400023078; PGSC0003DMT400023078; PGSC0003DMG400008936. DR GeneID; 102586434; -. DR Gramene; PGSC0003DMT400023078; PGSC0003DMT400023078; PGSC0003DMG400008936. DR KEGG; sot:102586434; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AHR0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 151 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 151 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 36294 MW; 817AF65192E514ED CRC64; MFEFNLNNNM SNNTHNEHDD ELGQSEDKLE EIPRDHLFEK PLTPSDVGKL NRLVIPKQHA EKYFPLSGNN NNNTNNNDGG TEKGLLLSFE DESGKSWRFR YSYWNSSQSY VLTKGWSRFV KEKRLDAGDI VLFDRHRSES DRLFIGWRRR NTVSASTSIS TPAAVHNTAA AAVTRNMGGG GGGGGWAHVY YGGHPYPSAG AGLLYQPDCL HAGGGAMPNQ TTSVNNNTRR HVRLFGVNLE CEADDSSWSE PPPTPDGGGS STSSHNQDHG RSQDQASQHY YQYQFQYSKP HVTVSAAASS YNNNHHNHKD MSFSRDVNQM RYHQG // ID M1AKG6_SOLTU Unreviewed; 209 AA. AC M1AKG6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024648}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024648, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024648} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024648}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024648} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024648}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024648; PGSC0003DMT400024648; PGSC0003DMG400009538. DR Gramene; PGSC0003DMT400024648; PGSC0003DMT400024648; PGSC0003DMG400009538. DR InParanoid; M1AKG6; -. DR OMA; VMANGIK; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 110 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 110 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 209 AA; 25245 MW; 59422C564026B5A0 CRC64; MLQKIPKGFL KYLKKYDQYE HAILRRAGKK WRVKVNGRRL EDGWEKFSDQ HDLHLRDILV FRHEGDMEFE VSIFNLNQQC EREYEYKYEY EYESKDKPNH NIKSSRKASH FVCIVRPYCL SRDALLVPKE FASRNGLFNT KERDLLVRDE RQRSWNVKLR SYGDSVVYLI DGWNKIRDAN CLMEGDCIMF EVVTSGNKPI WKFKRMTEQ // ID M1AKG8_SOLTU Unreviewed; 161 AA. AC M1AKG8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024666}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024666, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024666} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024666}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024666} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024666}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024666; PGSC0003DMT400024666; PGSC0003DMG401009541. DR Gramene; PGSC0003DMT400024666; PGSC0003DMT400024666; PGSC0003DMG401009541. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKG8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 161 AA; 18957 MW; C538157BD78E1897 CRC64; MEFEVSVFDS SHCDREYAEY LQEEGEGGRA RTVEEISKEF EFKVLPASIS ANDASPHFIS IIKPYSIFKH FLYIPLAFAK SNGWMNRRFE MILMDEQQRS WPVRLGPVSD DHIGIHIGWQ KFKEANDVQV GDIYRFELIN NEKIPVAYFH REYFITSLYF S // ID M1AKH1_SOLTU Unreviewed; 158 AA. AC M1AKH1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024672}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024672, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024672} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024672}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024672} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024672}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024672; PGSC0003DMT400024672; PGSC0003DMG401009541. DR Gramene; PGSC0003DMT400024672; PGSC0003DMT400024672; PGSC0003DMG401009541. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH1; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 148 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 148 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 158 AA; 17825 MW; 7402D1BC80CC63BB CRC64; MKGSASPQPE GKMVNLDAKS VSTEATGVKI KTSYVTAPKV LPASISANDA SPHFISIIKP YSIFKHFLYI PLAFAKSNGW MNRRFEMILM DEQQRSWPVR LGPVSDDHIG IHIGWQKFKE ANDVQVGDIY RFELINNEKI PVAYFHRIYS GKDAKQSP // ID M1AKH2_SOLTU Unreviewed; 513 AA. AC M1AKH2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024673}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024673, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024673} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024673}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024673} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024673}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006357038.1; XM_006356976.2. DR EnsemblPlants; PGSC0003DMT400024673; PGSC0003DMT400024673; PGSC0003DMG401009541. DR GeneID; 102604776; -. DR Gramene; PGSC0003DMT400024673; PGSC0003DMT400024673; PGSC0003DMG401009541. DR KEGG; sot:102604776; -. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; M1AKH2; -. DR OMA; CFLANIW; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH2; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 408 503 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 408 503 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 513 AA; 59217 MW; 19EE7DF24A0032C9 CRC64; MKIPSKKPHF FKPILPGFKN GIKIPIGFLK YLKGYEHIKR AVLKRGGKKW RIKLNEHRFE DGNWGKFVEE NDLQLGDLLV FRHEGNMEFE VSVFDSSHCD REYAEYLQEE GEGGRARTVE EISKEFEFKE AATRNQSHVV CKVRAYCLSK CYFRLPGKFA RANGLINKKC SLIIRDEKRR SWSLKLYTSY SQVYIGGRWA ELRDANDIKE GDHITFKVVA NGEMPIWEFH TNVTEKSKCN IMSSHEAFRN IEAAKNIPLS HPHFVCTMKS YYLSKCSLRV PVSFARLNGL RNRTCTITIR DKRRSWTFKL YARGVNTTIV GGWHKFCIVN CLKEGDYLMF EILDNGEKPI LKFHDMKGSA SPQPEGKMVN LDAKSVSTEA TGVKIKTSYV TAPKVLPASI SANDASPHFI SIIKPYSIFK HFLYIPLAFA KSNGWMNRRF EMILMDEQQR SWPVRLGPVS DDHIGIHIGW QKFKEANDVQ VGDIYRFELI NNEKIPVAYF HRIYSGKDAK QSP // ID M1AKH3_SOLTU Unreviewed; 283 AA. AC M1AKH3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024674}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024674, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024674} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024674}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024674} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024674}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024670; PGSC0003DMT400024670; PGSC0003DMG401009541. DR EnsemblPlants; PGSC0003DMT400024671; PGSC0003DMT400024671; PGSC0003DMG401009541. DR EnsemblPlants; PGSC0003DMT400024674; PGSC0003DMT400024674; PGSC0003DMG401009541. DR Gramene; PGSC0003DMT400024670; PGSC0003DMT400024670; PGSC0003DMG401009541. DR Gramene; PGSC0003DMT400024671; PGSC0003DMT400024671; PGSC0003DMG401009541. DR Gramene; PGSC0003DMT400024674; PGSC0003DMT400024674; PGSC0003DMG401009541. DR eggNOG; ENOG410JDAR; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32958 MW; 76D275B7F5A206A2 CRC64; MKIPSKKPHF FKPILPGFKN GIKIPIGFLK YLKGYEHIKR AVLKRGGKKW RIKLNEHRFE DGNWGKFVEE NDLQLGDLLV FRHEGNMEFE VSVFDSSHCD REYAEYLQEE GEGGRARTVE EISKEFEFKE AATRNQSHVV CKVRAYCLSK CYFRLPGKFA RANGLINKKC SLIIRDEKRR SWSLKLYTSY SQVYIGGRWA ELRDANDIKE GDHITFKVVA NGEMPIWEFH TNVTEKSKCN IMSSHEAFRN IEAAKNIPLS HPHFVCTMKS YYLSKCSLVS CRN // ID M1AKH4_SOLTU Unreviewed; 357 AA. AC M1AKH4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024675}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024675, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024675} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024675}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024675} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024675}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024675; PGSC0003DMT400024675; PGSC0003DMG402009541. DR Gramene; PGSC0003DMT400024675; PGSC0003DMT400024675; PGSC0003DMG402009541. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 143 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 143 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 41600 MW; 277D26C890A28A7D CRC64; MSSGEAFPCA EADTYNPCSL SHFECIVKPY CLTHSYLRLP KHFAMENGLF NKKCDVIIRD ERQRSWNLRL ATHDCRVHLL GGWREFRVAN DLNAGDYMMF EVIANGEKPI WKFRDKPNPN IVSTRKAFPK EEFATCSSFG QSHLECIVWP YCLSRNYFRL PRGFARANGL INKKCGLVIR DERQRSWNLR IDTYGYGVYI AKGWRKFRVE NDLKEGDCMM FEVVTNGEKP IWKFYGTATH KPFGQSHFVC IVRPYCLVND FLYIPTKIAL ANGLTNKKCD LIIRDDTRER SWNVKLRSFG SSVCIKGGWR DFRDANCLKE GDCIMFEVVS NGEKTTWKYN GKNSRKDAKH HRNQLTR // ID M1AKH5_SOLTU Unreviewed; 425 AA. AC M1AKH5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024676}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024676, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024676} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024676}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024676} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024676}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024676; PGSC0003DMT400024676; PGSC0003DMG402009541. DR Gramene; PGSC0003DMT400024676; PGSC0003DMT400024676; PGSC0003DMG402009541. DR InParanoid; M1AKH5; -. DR OMA; FAMENDI; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 51 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 90 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 315 410 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 51 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 90 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 315 410 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 425 AA; 49853 MW; 81E177C379575CBD CRC64; MGKKWLVKVN GWRLEEGWEK FAEEHDLQLG DFLVFKHEGD MEFEVSIFDS SHCDREYTEY LQEGGDNAEE TFKKVEFKEA ATHNSRGQSH FQCIVRPNYI SNGYLRLPKH FAMENGLFNK KCDVIIRDER QRSWNLRLAT HDCRVHLLGG WREFRVANDL NAGDYMMFEV IANGEKPIWK FRDKPNPNIV STRKAFPKEE FATCSSFGQS HLECIVWPYC LSRNYFRLPR GFARANGLIN KKCGLVIRDE RQRSWNLRID TYGYGVYIAK GWRKFRVEND LKEGDCMMFE VVTNGEKPIW KFYGTATHKP FGQSHFVCIV RPYCLVNDFL YIPTKIALAN GLTNKKCDLI IRDDTRERSW NVKLRSFGSS VCIKGGWRDF RDANCLKEGD CIMFEVVSNG EKTTWKYNGK NSRKDAKHHR NQLTR // ID M1AKH6_SOLTU Unreviewed; 161 AA. AC M1AKH6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024677}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024677, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024677} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024677}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024677} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024677}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024677; PGSC0003DMT400024677; PGSC0003DMG402009541. DR Gramene; PGSC0003DMT400024677; PGSC0003DMT400024677; PGSC0003DMG402009541. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 161 AA; 18206 MW; 6EDFBE084B791058 CRC64; MEGDYMTFEV VANGENPIWK FHPITRLRHK KSDVTTPISQ TPASTSADAN PHFISTIKPY TFTKALLYLP MDFVKSNGLM IRSEMILIDE KQRSWSVWLG RTGHQFGIKR GWTQFRNANG IQVGDTYKFE LINNGTIPIA HVNILGVKDA NRQASQKPLT G // ID M1AKH7_SOLTU Unreviewed; 103 AA. AC M1AKH7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024679}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024679, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024679} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024679}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024679} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024679}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024679; PGSC0003DMT400024679; PGSC0003DMG402009541. DR Gramene; PGSC0003DMT400024679; PGSC0003DMT400024679; PGSC0003DMG402009541. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 87 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 87 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 103 AA; 11867 MW; 0B90DC0D744AA1E9 CRC64; MLNWDKFEQY LPMDFVKSNG LMIRSEMILI DEKQRSWSVW LGRTGHQFGI KRGWTQFRNA NGIQVGDTYK FELINNGTIP IAHVNILGVK DANRQASQKP LTG // ID M1AKH8_SOLTU Unreviewed; 321 AA. AC M1AKH8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024680}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024680, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024680} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400024680}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400024680} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400024680}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400024680; PGSC0003DMT400024680; PGSC0003DMG402009541. DR Gramene; PGSC0003DMT400024680; PGSC0003DMT400024680; PGSC0003DMG402009541. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AKH8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 51 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 90 184 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 51 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 90 184 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 36990 MW; 94F292C1B38AD654 CRC64; MGKKWLVKVN GWRLEEGWEK FAEEHDLQLG DFLVFKHEGD MEFEVSIFDS SHCDREYTEY LQEGGDNAEE TFKKVEFKEA ATHNSRGQSH FQCIVRPNYI SNGYLRLPKH FAIVNGLTNK KCGLIVRDER QRSWNLRLVA YDSCVRVYGE WSIFCVVNNL MEGDYMTFEV VANGENPIWK FHPITRLRHK KSDVTTPISQ TPASTSADAN PHFISTIKPY TFTKALLYLP MDFVKSNGLM IRSEMILIDE KQRSWSVWLG RTGHQFGIKR GWTQFRNANG IQVGDTYKFE LINNGTIPIA HVNILGVKDA NRQASQKPLT G // ID M1ALA4_SOLTU Unreviewed; 1114 AA. AC M1ALA4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400025312, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400025312} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400025312}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400025312} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400025312}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006365636.1; XM_006365574.1. DR UniGene; Stu.3365; -. DR ProteinModelPortal; M1ALA4; -. DR STRING; 4113.PGSC0003DMT400025312; -. DR EnsemblPlants; PGSC0003DMT400025312; PGSC0003DMT400025312; PGSC0003DMG400009773. DR GeneID; 102592438; -. DR Gramene; PGSC0003DMT400025312; PGSC0003DMT400025312; PGSC0003DMG400009773. DR KEGG; sot:102592438; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; M1ALA4; -. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1003 1087 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 138 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1114 AA; 123656 MW; C4A74FE875B63A65 CRC64; MKTPANTAGV QQQQQHTVNG NHPAEVEKKS INPELWQACA GPLVNLPAAG THVVYFPQGH SEQVAASMKK DVDAQIPNYP NLPSKLVCLL HNITLHADPE TDEVYAQMTL QPVPSFDKEA LLRSDLSMKL NKPQTEFFCK TLTASDTSTH GGFSVPRRSA EKIFPPLDYS MQPPAQELVA RDLHDNLWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN RQPTNLSSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVIP LAKYYKATYS CQVSLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESTAGERRN RVSIWEIEPV TAPFFICPTP PFFRSKRPRL PGMPDDDCSD LDGLFKRTMP WLGDDFGMKD PQGLPGLSLV QWMNMQQNPS LANSMQPNYL HSLSGSVLQN VGGGADLSRQ LGLPAPQLPQ QNTLQFGAQR PTQQVQQLDQ LQKLPTTTLS PAGSIMQSQQ QLSDISQQPR QNLINQSVPT NHVQAQLLQA QSLVQSQNVL QQQQSFQNQL QRNLPQNLPQ QQQIMNQTQQ QSFMPPQPND PLNQQLHFSD NQLQMQLLQK LQQQSLLAQQ SLLQQPSQLM PIQDQQKHID VSQNFSRSLA TSQMLDMSQT TSTSTTLSQP QVAQQQMTIN NSQSNLRFAQ PNQHMKQQQQ QQPGILPEIP GQVGQILPPT TNQLSANCSS FLTGAVGGGQ SVVTDDIPSC STSPSTNNCQ NVVQPIMNGR IHRGTAAADE TTQSSLPLLS SSGLEAMSPN RNLVKDLQQK PDVKPSLNIS KSQNHGFSTP QTYLNTAVPQ MDYLDSSSSA TSVYFSQNDV QLQQTTNPMS FSSQAVVFRD SQDGEVQGDP RNSVAFGANM DNQLGISMMP DSLITNSLVG SRKDVSNNIS SGGGMLSSYE NPKDAQPELS SSIVSQSFGV PDMAFNSIDS TINEGSFMNR GAWAPPPQMP RMRTFTKVHK RGAVGRSIDI TRYSGYEELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DDLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDFGYN VQNQAFSSSD GGNM // ID M1AMQ5_SOLTU Unreviewed; 226 AA. AC M1AMQ5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400026146}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400026146, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400026146} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400026146}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400026146} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400026146}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400026146; PGSC0003DMT400026146; PGSC0003DMG400010079. DR Gramene; PGSC0003DMT400026146; PGSC0003DMT400026146; PGSC0003DMG400010079. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; M1AMQ5; -. DR OMA; FKIMIND; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 226 AA; 26592 MW; DB99614F8E5A5C58 CRC64; MATICERCKV LEKQKYWEEF DKQHKFFKIM INDFRRRLRI PQKFVTCFKN SHKLLGQKIL TGPSGNTWLV EVVRTEEDDY VFCNGWEVFV KDHCLEDADM LVFKMDGFSA FDVMIFDASA CEKETTFFVK KNRNPCKHPD EVTDEHTTEQ QSSEDETSNE DDDTDEEENI QEPTRGRKSS RGKQYQFQSL QSSKGKKMKK ILVAKQDNRK RKCTPMSSRK KNVEPG // ID M1AQ14_SOLTU Unreviewed; 350 AA. AC M1AQ14; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400027673}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400027673, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400027673} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400027673}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400027673} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400027673}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006351837.1; XM_006351775.2. DR ProteinModelPortal; M1AQ14; -. DR EnsemblPlants; PGSC0003DMT400027673; PGSC0003DMT400027673; PGSC0003DMG400010668. DR GeneID; 102599396; -. DR Gramene; PGSC0003DMT400027673; PGSC0003DMT400027673; PGSC0003DMG400010668. DR KEGG; sot:102599396; -. DR eggNOG; ENOG410JP1W; Eukaryota. DR eggNOG; ENOG41119B4; LUCA. DR InParanoid; M1AQ14; -. DR OMA; NDHCICE; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AQ14; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 168 202 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 350 AA; 41234 MW; F09DFFA5D340467F CRC64; MEKGFVKIFS PEKSGKRLKI PTCFTYYKNE KLPKKIYLRD RFGNMWPIGV NKIGEKFYFQ YGWEKFIEDN TVEVGDFLIF DYDGNKIFDF KLLGRTKCEK KGVGGLKLTV KEEKVEEMSV EHQKSADPKG KNWASDNFNS SSDDDNDVEY MGEEEEEYKE TKKVPCHAEE EEEEQEDDED EEEEYEEEEE EEEEEDESEE GENQRANTLK KKESRSKAFA CKVRNRHDHF GVDIFKSGRA TQPKNPYFVA KIRSKRRDQL YVPVDVVKDY KLELPSSMTI RDSVGREFVT KLKKWKDGRI WLVGGWRSLC RWNLVEKNDH CICEFVRGKR NKDLHLQVQV LHEGASSIIC // ID M1AWD5_SOLTU Unreviewed; 406 AA. AC M1AWD5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400031863}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400031863, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400031863} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400031863}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400031863} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400031863}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400031863; PGSC0003DMT400031863; PGSC0003DMG400012222. DR Gramene; PGSC0003DMT400031863; PGSC0003DMT400031863; PGSC0003DMG400012222. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; M1AWD5; -. DR OMA; TIEREHM; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 45641 MW; B29EB4CA88A26017 CRC64; MNFFDQGGTR QFSHSSSSSQ KIIVPDFSYQ QRSTTNNGED STDLVMNMDL DPADEVGESN TIEREHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGVGEL GKDRLFIDWR RRPDAPDHLH YTHFTNHHLH NNLYRSNIQY PAAAAWNRPL FLQPPPPPDH SHLQYSLEPA AGSMSHHHQQ QSHGSSPNYY YDTCNFNNSR TTVVNGNPCP SGSVVYLRSG SAQVPQQAGL MQLRGHSNST SGRVVEPVVF DSVPVVQGKA AAKRFRLFGV NMDCPISDSD ESCEITSSSS SLPNPATTAT YSHVPQFSSL SFRTFNNYDT NPPAATEEES FDKGKASMSL NLDLDI // ID M1AWK8_SOLTU Unreviewed; 647 AA. AC M1AWK8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400031964, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400031964} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400031964}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400031964} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400031964}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400031964; PGSC0003DMT400031964; PGSC0003DMG400012261. DR Gramene; PGSC0003DMT400031964; PGSC0003DMT400031964; PGSC0003DMG400012261. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AWK8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 558 647 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 647 AA; 72523 MW; 2C195759D6980178 CRC64; MASKNGCYQS QQKKNSSGKD DLYHELWQLC AGPIVDVPKE GESVYYFPQG HMEQLAKLSA CRDVTAHELT DSSSGNGLLQ KCRAEEDNDE VYVQITLMPE APDKAEPTNP DPFLPEPVKP KVHSFCKVLT ASDTSTHGGF SVLRKHANEC LPPLDMNQQI PTQELIAKDL HDMEWHFKHI FRGQPRRHLL TTGWSNFVSS KRLVAGDSFV FLRGDNGELR VGVRRLVRQQ SSMPSSVISS QSMHLGVLAT ASHAVTTQTL FVVYYKPRTT QFIVSLNKYL EAVNHGYSVG MRFKMQFEAE ENPDRRFMGT IVGVDDLSSQ WKDSAWRSLK VRWDEPAAIA RPDRVSPWEI EPYVSSIPNA LVPPTAGKNK RHRLHSEIKI SEPASSIASA VWNPSLDSPQ FNTSGINSST NCTLTSRTES GWPLPHLNTA GMLVDETEDS RSASTWCGFP CVLAPQFGQG TNQPIVIPTD ERKCNTKTTC RLFGIDLKKT SISTTEALLP PQPADISRVS AERAPPNMAP AGDSDQKSDL SVDFKDQMQG HLRLPLKEVQ SKQSCSTRSR TKVQMQGVAV GRAVDLTILK GYNELTKELE EMFEIQGELQ SRQKWGILFT DDEGDTMLMD DYPWQYSRKE RQGVDIARRR SLFLRSF // ID M1AWK9_SOLTU Unreviewed; 655 AA. AC M1AWK9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400031965, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400031965} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400031965}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400031965} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400031965}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006343828.1; XM_006343766.2. DR STRING; 4113.PGSC0003DMT400031965; -. DR EnsemblPlants; PGSC0003DMT400031965; PGSC0003DMT400031965; PGSC0003DMG400012261. DR GeneID; 102605272; -. DR Gramene; PGSC0003DMT400031965; PGSC0003DMT400031965; PGSC0003DMG400012261. DR KEGG; sot:102605272; -. DR InParanoid; M1AWK9; -. DR KO; K14486; -. DR OMA; EAMNNKF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1AWK9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 561 642 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 655 AA; 73486 MW; 0D143AC00DAC5F4A CRC64; MASKNGCYQS QQKKNSSGKD DLYHELWQLC AGPIVDVPKE GESVYYFPQG HMEQLVASIN QEMDQRVPSF NLKSKILCRV INSHFLAEED NDEVYVQITL MPEAPDKAEP TNPDPFLPEP VKPKVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMN QQIPTQELIA KDLHDMEWHF KHIFRGQPRR HLLTTGWSNF VSSKRLVAGD SFVFLRGDNG ELRVGVRRLV RQQSSMPSSV ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTTQFIVSLN KYLEAVNHGY SVGMRFKMQF EAEENPDRRF MGTIVGVDDL SSQWKDSAWR SLKVRWDEPA AIARPDRVSP WEIEPYVSSI PNALVPPTAG KNKRHRLHSE IKISEPASSI ASAVWNPSLD SPQFNTSGIN SSTNCTLTSR TESGWPLPHL NTAGMLVDET EDSRSASTWC GFPCVLAPQF GQGTNQPIVI PTDERKCNTK TTCRLFGIDL KKTSISTTEA LLPPQPADIS RVSAERAPPN MAPAGDSDQK SDLSVDFKDQ MQGHLRLPLK EVQSKQSCST RSRTKVQMQG VAVGRAVDLT ILKGYNELTK ELEEMFEIQG ELQSRQKWGI LFTDDEGDTM LMDDYPWQDF CNVARKIFIC SSQDMKKLTL SRADS // ID M1B268_SOLTU Unreviewed; 188 AA. AC M1B268; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400035364}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035364, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035364} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400035364}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035364} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035364}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400035364; PGSC0003DMT400035364; PGSC0003DMG400013589. DR Gramene; PGSC0003DMT400035364; PGSC0003DMT400035364; PGSC0003DMG400013589. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B268; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 188 AA; 21774 MW; F8238E3B29668135 CRC64; MKIPPKKPHF FKPLQPGFKN GLKIPIGFLK YLKGNDQIEH AILRRDGNKW PTKVNDPRSE AGWAEFVQQY DLQLGDILMF RHEGNMEFEV SIFDSTHCDR EYAEYMQEGG GGGGAHTEDA TERPMMRMIK SSTKASSPVK TATHHKSFGH FECIIREYCI RRGYLVSFKT HYFLQTLQVN VFHNQVTY // ID M1B269_SOLTU Unreviewed; 309 AA. AC M1B269; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400035365}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035365, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035365} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400035365}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035365} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035365}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400035365; PGSC0003DMT400035365; PGSC0003DMG400013589. DR Gramene; PGSC0003DMT400035365; PGSC0003DMT400035365; PGSC0003DMG400013589. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; M1B269; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B269; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 36099 MW; 5C9F3E582684280C CRC64; MKIPPKKPHF FKPLQPGFKN GLKIPIGFLK YLKGNDQIEH AILRRDGNKW PTKVNDPRSE AGWAEFVQQY DLQLGDILMF RHEGNMEFEV SIFDSTHCDR EYAEYMQEGG GGGGAHTEDA TERPMMRMIK SSTKASSPVK TATHHKSFGH FECIIREYCI RRGYLYLPRR FAIANGLINK KCDLIIRDER QRLWNFKLSS SITQTYIIGC GWTKFFADNC LRKGDRIMFE VVTNGETPIW KFQVTNREAP LLKFQGMFIL IEPISYFFDD LYSLSYLCII LRCLYKYTSW ITFYMLPKVC KLSSFTLFT // ID M1B270_SOLTU Unreviewed; 224 AA. AC M1B270; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400035366}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035366, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035366} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400035366}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035366} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035366}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400035366; PGSC0003DMT400035366; PGSC0003DMG400013589. DR Gramene; PGSC0003DMT400035366; PGSC0003DMT400035366; PGSC0003DMG400013589. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B270; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 160 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 160 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 26216 MW; 2672F4F903124666 CRC64; MEFEVSIFDS THCDREYAEY MQEGGGGGGA HTEDATERPM MRMIKSSTKA SSPVKTATHH KSFGHFECII REYCIRRGYL YLPRRFAIAN GLINKKCDLI IRDERQRLWN FKLSSSITQT YIIGCGWTKF FADNCLRKGD RIMFEVVTNG ETPIWKFQVT NREAPLLKFQ GMFILIEPIS YFFDDLYSLS YLCIILRCLY KYTSWITFYM LPKVCKLSSF TLFT // ID M1B2I2_SOLTU Unreviewed; 1097 AA. AC M1B2I2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035592, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035592} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400035592}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400035592} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035592}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006360656.1; XM_006360594.2. DR RefSeq; XP_006360657.1; XM_006360595.2. DR ProteinModelPortal; M1B2I2; -. DR STRING; 4113.PGSC0003DMT400035592; -. DR EnsemblPlants; PGSC0003DMT400035592; PGSC0003DMT400035592; PGSC0003DMG400013686. DR GeneID; 102587769; -. DR Gramene; PGSC0003DMT400035592; PGSC0003DMT400035592; PGSC0003DMG400013686. DR KEGG; sot:102587769; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; M1B2I2; -. DR OMA; TGARDEM; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 985 1069 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1097 AA; 121260 MW; D45871313D236715 CRC64; MKTPGNGAGG GNVNPAEGEK KSINPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI KKDVEAQIPN YPNLPSKLIC LLHNVTLHAD PETDEVYAQM TLQPVPSFDK EALLRSDLSM KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW TFRHVYRGQP KRHLLTTGWS LVVSGKRLFA GDSVLFIRDD KHQFLLGIRK ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM PWLGDDFGMT DPQGLPGLSL IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQMQHNLQFN NAHRPNQQLD QLQKLPAATL NPLDSIMQSQ QQLSDVSQQP RQNLTNQSLP TTQVHTQHMQ AQSLVQSQNV LPPQQSVQNQ NQLQRNLPQS LPQQHPQQQI LSQTQQQSFM PSQPPDPVNQ QQHFSDNQAQ LQMLQKLHQQ QKSLLAQQSG LQQPSQLGPI QDHQKQLMDA SQNFSRSLAT NQMLDASQTM STSLPHSQVV QQQQMTRINS PSNLRFSQST QQPKLQQQQS GNLSDLSGPV NYSLPRTSYQ LSTNGSNLTG TAGGGQSLVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA RDEMTHCSGP FEVMSANNNL QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS SSATSACLSQ NDVQLQQTAT DPLSCSSQPL IFRDSPDGGE VQGDPRNNVA FGATNMNNNQ LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASEYVTFNSI DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI DIARYSGYEE LKLDLARRFG IEGQLEDRQR IGWKLVYVDH EKDVLLVGDD PWEEFVSCVH CIKILSPQEV QQMSLDGDFG GSVLQNQDCS SSDAGDV // ID M1B469_SOLTU Unreviewed; 845 AA. AC M1B469; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400036765, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400036765} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400036765}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400036765} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400036765}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006341482.1; XM_006341420.2. DR STRING; 4113.PGSC0003DMT400036765; -. DR EnsemblPlants; PGSC0003DMT400036765; PGSC0003DMT400036765; PGSC0003DMG400014179. DR GeneID; 102582348; -. DR Gramene; PGSC0003DMT400036765; PGSC0003DMT400036765; PGSC0003DMG400014179. DR KEGG; sot:102582348; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; M1B469; -. DR OMA; HESAYTD; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B469; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 719 803 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 845 AA; 93925 MW; 8A4372FF92B18BC4 CRC64; MAASEVSIQG YSEPSDGSRP VSDTVRSSSG VGRVDADTAL YTELWRSCAG PLVTVPREGE LVYYFPQGHI EQVEASTNQV ADQQMPSYNL PSKILCRVVN VLLKAEPDTD EVYAQVTLMP EPNQDENTVK KEPMRPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSRQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGDL RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTKT MFTVYYKPRT SPTEFIVPYD HYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPQRWLESKW RCLKVRWDEN SSIPRPDRVS PWKIEPALSP PALNAPPVAR PKRPRSSILP SSPDSSVLTR EGSSRVTADH SQASGFPRVL QGQELSTFRG GFAESNETDL SEKPMIWQPS VNDEKNDIHS ASKRYLPDKW LPLGRPESSL TDLLSGFGVP NNSSHGFCPS ADQAAFGASL VKQQTQDQEK DFSLLGKPWS LLSSGLSLNL MDSGSKAPGI GGDTPYQMRG DARYSGYGEF SVLPGHRVAN QQGSWIMPQP VSPYMHSREM MHKPTVVKQP EAVKPKEGNC KLFGIPLTSN VCTDPVMMRK SSLIDPASDM NIGIHPHQSL ATDSDQRSEQ SKGSKVDDGI AANDHDKQFH TFHLSARDRD GKGHSSSTRS CTKVHKQGTA LGRSVDLAKF NNYDELIAEL DQLFDFNGEL KARSKSWLVV YTDDEGDMML VGDDPWQEFC GMVRKIFIYT KEEVQRMNPG TLNSKGEDTS SVAEGSDAKE VKNLQLPSES GQAES // ID M1B5E7_SOLTU Unreviewed; 271 AA. AC M1B5E7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400037453}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037453, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400037453}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037453} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037453}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400037453; PGSC0003DMT400037453; PGSC0003DMG400014452. DR Gramene; PGSC0003DMT400037453; PGSC0003DMT400037453; PGSC0003DMG400014452. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B5E7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30405 MW; 0B9AA51B1069C8F6 CRC64; MATSESCRNA TGAGKVDAEK ALYTELWRAC AGPLVTVPCE DELVFYFPQG HIEQVEASTN QASDQQMPVY NLRSKILCRV INVLLKAEPD TDEVYAQVTL LPEPNQDENV VSKEPMPSPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHANEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV ISSHSMHLGV LATAWHAIQT KTLFTVYYKP R // ID M1B5E8_SOLTU Unreviewed; 829 AA. AC M1B5E8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037454, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037454} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400037454}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037454} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037454}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006346635.1; XM_006346573.2. DR STRING; 4113.PGSC0003DMT400037454; -. DR EnsemblPlants; PGSC0003DMT400037454; PGSC0003DMT400037454; PGSC0003DMG400014452. DR GeneID; 102594206; -. DR Gramene; PGSC0003DMT400037454; PGSC0003DMT400037454; PGSC0003DMG400014452. DR KEGG; sot:102594206; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; M1B5E8; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B5E8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 703 787 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 829 AA; 92634 MW; F801E4BF953BF00C CRC64; MATSESCRNA TGAGKVDAEK ALYTELWRAC AGPLVTVPCE DELVFYFPQG HIEQVEASTN QASDQQMPVY NLRSKILCRV INVLLKAEPD TDEVYAQVTL LPEPNQDENV VSKEPMPSPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHANEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV ISSHSMHLGV LATAWHAIQT KTLFTVYYKP RTSPAEFIVP YDQYMESLKN NYSIGMRFKM RFEGEEAPEQ RFTGTIVGIE NADLKRWPES KWRCLKVRWD ETSAIPRPDR VSPWKVEPAL SPPALDPLPI PRQKRPRSNV LPSSPDSSVL TREGSSKVTV DPSQASGFSR VLQGQEISTL RGNFVENNES DSSEKPPVWQ PLLDDEKADV HSASRKCISD KRFPLARPES SLTDLLSGFG GQSSSSHGFH SPTRGQTAPA SWVKRQALDK ETDFSLLGKQ WSLVSSGLSL NLMDSGLKGA DTLYQMRGTS RLNGFNEYPT LPGHRTDNQQ GSWLMSPSVL PYIQMSTRSG EIMPKPMASP QPEAMKPKEG NCKLFGIPLV SKCATIDPVM LRKNSPIDST SNMHFGIHPH QFPITESDQR SEQSKGSKLP DDGITVHDQE EQFQTSHPGT RDREGKVLVN STRSCTKVHK QGTALGRSVD LAKFNNYEEL IAELDHIFDF NGELKARNKN WLVVYTDDEG DMMLVGDDPW QEFCGMVRKI FIYTKDEVQR MNPGTLNSKG EDISSVAEGS DGKEVKNLQL HSDSSPEDS // ID M1B5P7_SOLTU Unreviewed; 745 AA. AC M1B5P7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400037688}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037688, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037688} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400037688}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037688} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037688}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006350377.1; XM_006350315.2. DR EnsemblPlants; PGSC0003DMT400037688; PGSC0003DMT400037688; PGSC0003DMG400014537. DR GeneID; 102594229; -. DR Gramene; PGSC0003DMT400037688; PGSC0003DMT400037688; PGSC0003DMG400014537. DR KEGG; sot:102594229; -. DR InParanoid; M1B5P7; -. DR OMA; NGWQRFV; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B5P7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 644 741 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 644 741 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 745 AA; 84895 MW; 4BB7632FCFE2DCB9 CRC64; MRKRRQTVEM APQFFKIILS PHASKLHIPD EFVIKYGADL RDVVFLEVPT GAIWQVKLLQ NSNGTKWLNH GWNQFKEYYS IAMGYFLLFQ YNGNSHFSVF IFDLSASEIE YLSGPNEDDN NNAKVAHPVS RPNCLAERQE VKLEKPDVEE DLTYATQKHK KKEKNLYNEH CNEVLHPNTT KYNKRKYSLN LEASHRRYPL RSKQVKLEQS KANGSPSYSG KQRPATSLSF PGIQSERKES TRVKLEKANS EEDFCCAVPK AKRGEGNMEK LVKQDRQHNM FDEAHKFKGH CNEAPIVDPS TSKMTTTNQH SKKRTATSLD ASNCRYPLRS KQLKDVKIEK GDVEGRCNEA LVVDPSTSKV TTTNQHSKKR TAASLDASNC RYPLRSKQLK QVKIEKGDVK EHCNKIPVVD PSATKMTTTT RHHEKKTSAS LDTSHCKYPL RNKQLKEVKL EKTNAEEDLL YVAQKAMRKK ANNVKLEKGD VEERSKVGDP SASTTTNQHN EKKTATPLDA SHCRYPLRSK QHIEVKLEQW ETGGNMHNKT PKNKVVADSP YCIRQNLGLP ASSPSYQPVR VKLEKPDNLF CAAEKVKGRE TNNVKLDTGD LEGNLIAASY KGKDSTASEM TVLGKKKMLP SEKHNRDMYF NPHFTVSMQP TCVSRKFQLD IPVEFFKKCL NEEETIVNLR VSNGRSWRAK LLDIQSNCPK MESSGWRDFV LDNNLKEHDT CVFELIDGIE PMLDVTIFRA TTPVS // ID M1B5P8_SOLTU Unreviewed; 210 AA. AC M1B5P8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400037689}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037689, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400037689}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400037689} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400037689}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400037689; PGSC0003DMT400037689; PGSC0003DMG400014537. DR Gramene; PGSC0003DMT400037689; PGSC0003DMT400037689; PGSC0003DMG400014537. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B5P8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 210 AA; 23785 MW; 480D0E2D655C9399 CRC64; MHNKTPKNKV VADSPYCIRQ NLGLPASSPS YQPVRVKLEK PDNLFCAAEK VKGRETNNVK LDTGDLEGNL IAASYKGKDS TASEMTVLGK KKMLPSEKHN RDMYFNPHFT VSMQPTCVSR KFQLDIPVEF FKKCLNEEET IVNLRVSNGR SWRAKLLDIQ SNCPKMESSG WRDFVLDNNL KEHDTCVFEL IDGIEPMLDV TIFRATTPVS // ID M1B7Z7_SOLTU Unreviewed; 372 AA. AC M1B7Z7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400039247}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400039247, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400039247} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400039247}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400039247} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400039247}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400039247; PGSC0003DMT400039247; PGSC0003DMG401015175. DR Gramene; PGSC0003DMT400039247; PGSC0003DMT400039247; PGSC0003DMG401015175. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B7Z7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 41674 MW; 5775A70C7F756070 CRC64; MECENEACGG CKKDCMLIHG KEVLSFFKVM IDKRFLQVLF FPPKFARSVS HLTDQETYLE DSSGQRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE KKSCSDIGNG RKRARTYPEA TTPDELFQTT DINSVKKKSK TSAESESEKV TYKTNTANFR TSTESESEKV TYKTNTANFK TSAESESEKV TYKPNTANFA TNIDSDIGKG QSVHSAIDVD ESCCMIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTEGTRS PFKGDIGKDN QVEANFRSQT EPNLNVEIDN LNSKAPSSKL EAGIRATNMV SSPAKDIPLR DPKYKKSNEA SQFGKFFVHN KLLGLFVFVV LF // ID M1B7Z8_SOLTU Unreviewed; 425 AA. AC M1B7Z8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400039248}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400039248, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400039248} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400039248}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400039248} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400039248}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400039248; PGSC0003DMT400039248; PGSC0003DMG401015175. DR Gramene; PGSC0003DMT400039248; PGSC0003DMT400039248; PGSC0003DMG401015175. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B7Z8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 425 AA; 47304 MW; 1C237373F5A5EDFB CRC64; MECENEACGG CKKDCMLIHG KEVLSFFKVM IDKRFLQVLF FPPKFARSVS HLTDQETYLE DSSGQRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE KKSCSDIGNG RKRARTYPEA TTPDELFQTT DINSVKKKSK TSAESESEKV TYKTNTANFR TSTESESEKV TYKTNTANFK TSAESESEKV TYKPNTANFA TNIDSDIGKG QSVHSAIDVD ESCCMIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTEGTRS PFKGDIGKDN QVEANFRSQT EPNLNVEIDN LNSKAPSSKL EAGIRATNMV SSPAKDIPLR DPKYKKSNEA SQFAREARLV KKEFEEITTE AFSPARAIHG GEYANGNEKV IKSEPADSED APSLNAVNYS CLVEIDGRDF LVTPS // ID M1B7Z9_SOLTU Unreviewed; 501 AA. AC M1B7Z9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400039249}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400039249, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400039249} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400039249}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400039249} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400039249}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006351459.1; XM_006351397.2. DR EnsemblPlants; PGSC0003DMT400039249; PGSC0003DMT400039249; PGSC0003DMG401015175. DR GeneID; 102580520; -. DR Gramene; PGSC0003DMT400039249; PGSC0003DMT400039249; PGSC0003DMG401015175. DR KEGG; sot:102580520; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1B7Z9; -. DR OMA; MECENEA; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1B7Z9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 406 501 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 406 501 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 501 AA; 56285 MW; 4AB6B0C6B15F2769 CRC64; MECENEACGG CKKDCMLIHG KEVLSFFKVM IDKRFLQVLF FPPKFARSVS HLTDQETYLE DSSGQRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE KKSCSDIGNG RKRARTYPEA TTPDELFQTT DINSVKKKSK TSAESESEKV TYKTNTANFR TSTESESEKV TYKTNTANFK TSAESESEKV TYKPNTANFA TNIDSDIGKG QSVHSAIDVD ESCCMIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTEGTRS PFKGDIGKDN QVEANFRSQT EPNLNVEIDN LNSKAPSSKL EAGIRATNMV SSPAKDIPLR DPKYKKSNEA SQFAREARLV KKEFEEITTE AFSPARAIHG GEYANGNEKV IKSEPADSED APSLNAVNYS CLVEIDGRDF LELPESWRKY LLQKAKLGRM IIYLRGPDKR IWPTLYYSRS GFNVLTCGWK QVAATYGLNP GDECLFQLVN QRGCIFDVRK I // ID M1BAE9_SOLTU Unreviewed; 526 AA. AC M1BAE9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400040786}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400040786, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400040786} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400040786}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400040786} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400040786}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006339907.1; XM_006339845.2. DR EnsemblPlants; PGSC0003DMT400040786; PGSC0003DMT400040786; PGSC0003DMG400015771. DR GeneID; 102596367; -. DR Gramene; PGSC0003DMT400040786; PGSC0003DMT400040786; PGSC0003DMG400015771. DR KEGG; sot:102596367; -. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR InParanoid; M1BAE9; -. DR OMA; FWMGLPV; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BAE9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 167 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 469 510 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 526 AA; 59489 MW; 6F49D60C6299E009 CRC64; MKIKVVHRSE PPNQERVSVS YPDMPKKEVF DEEQENQQLG TQEPEPEPDS AIPKLGNDNL SLVDASIPID SLTPSTQTPI SSLLGKRRRK PKEMIDQIST IPFRKKRVFK KQSQSSNGVA DAGRKSISTK LERATADGSG NATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF WMGLPVPFCK NHLPRKDTLV ILESETGEEY EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL VFQLVEPTRF KVYVIRANDL KEVDGALSLL NLDAPAKQSD AEGTIGNNIK KRQKKSLPLT VVQKRRRKED LSKQLVPLEA QSGNDSDEVA SEILEGSRSS GLAVNFRDIK SLEEFHILVN GVCIDSELPE HIRRKYYELC CSKNAFLHDR LLQGLHCKLV AGMIFEVVNI ADMVRACKLT TPRKEFDKWE KSLKSFELLG MNVGFLRTRL RWLLSLAFDS EGASDTKRYW DAKKEWSRAE DEIRNLEMKL EELKQASGKY VADVEALKSK AESYELMFQG EVNAPW // ID M1BAF0_SOLTU Unreviewed; 259 AA. AC M1BAF0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400040787}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400040787, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400040787} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400040787}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400040787} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400040787}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400040787; PGSC0003DMT400040787; PGSC0003DMG400015771. DR Gramene; PGSC0003DMT400040787; PGSC0003DMT400040787; PGSC0003DMG400015771. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BAF0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 167 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 259 AA; 29073 MW; D5CA164188FB2C2F CRC64; MKIKVVHRSE PPNQERVSVS YPDMPKKEVF DEEQENQQLG TQEPEPEPDS AIPKLGNDNL SLVDASIPID SLTPSTQTPI SSLLGKRRRK PKEMIDQIST IPFRKKRVFK KQSQSSNGVA DAGRKSISTK LERATADGSG NATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF WMGLPVPFCK NHLPRKDTLV ILESETGEEY EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL VFQLVEPTRF KVTLPNFFS // ID M1BAY6_SOLTU Unreviewed; 884 AA. AC M1BAY6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400041126, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400041126} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400041126}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400041126} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400041126}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400041126; PGSC0003DMT400041126; PGSC0003DMG400015919. DR Gramene; PGSC0003DMT400041126; PGSC0003DMT400041126; PGSC0003DMG400015919. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BAY6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 748 833 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 130 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 884 AA; 97857 MW; A65C55B4B0945185 CRC64; MRVSSSGFNP QQEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSPQEQK DVCLLPAELG IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR FRMLFETEES SVRSDLDPVR WPNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFSLRLKRP WPSGLPSLPG FPNGDMTMNS PLSWLRGDMG DQGMQSLNFQ GFGVTPFMQP RMDASMLGLQ PDILQTMAAL DPSKLANQSL MQFQHSIPNS SAPLSQSQML QPSHSQQNLI QGFSENHLIS QAQMLQQQLQ RRQNFNDQQQ LLQPQLQRHQ EVNSQFQHQQ QTKTISGLSQ MASATHPHLS HLQVLSSTGS PQTFSDILGN HVNASSNSNM QSLLSSFSCD GASTVLNVHE THPLVSSSSS SKRIALESQL PSRVTPFVVS QPEDVIAHNT KVSDLSSLLP PFPSRESFSD YRGVEDSQSN ALYGFTDSLN ILQTGMSNMK GSSGDNGSLS IPYATSTFTS TVGNEYPLNS DMTASSCVDE SGFLQSSENG DQANPTNRIF VKVQKSGSFG RSLDISKFSS YHELRSELAR MFGLEGLLED PERSGWQLVI VDRENDVLLL GDDPWQEFVN NVWYIKILSP HEVQQMGKEG LDLPNGVQAQ TQTLPGNVNG CDDYMNQKGS RNTMNGIPLG SLDY // ID M1BAY7_SOLTU Unreviewed; 892 AA. AC M1BAY7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400041127, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400041127} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400041127}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400041127} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400041127}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006357893.1; XM_006357831.2. DR STRING; 4113.PGSC0003DMT400041127; -. DR EnsemblPlants; PGSC0003DMT400041127; PGSC0003DMT400041127; PGSC0003DMG400015919. DR GeneID; 102606235; -. DR Gramene; PGSC0003DMT400041127; PGSC0003DMT400041127; PGSC0003DMG400015919. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; M1BAY7; -. DR OMA; YMSRQDL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BAY7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 756 841 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 892 AA; 98779 MW; 788F57A273F1D0FF CRC64; MRVSSSGFNP QQEEAGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNK EVDAHIPNYP GLPPQLICQL HNLTMHADVE TDEVYAQMTL QPLSPQEQKD VCLLPAELGI PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPCQELI AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DAVIFIWNEN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYAKAVY HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FSLRLKRPWP SGLPSLPGFP NGDMTMNSPL SWLRGDMGDQ GMQSLNFQGF GVTPFMQPRM DASMLGLQPD ILQTMAALDP SKLANQSLMQ FQHSIPNSSA PLSQSQMLQP SHSQQNLIQG FSENHLISQA QMLQQQLQRR QNFNDQQQLL QPQLQRHQEV NSQFQHQQQT KTISGLSQMA SATHPHLSHL QVLSSTGSPQ TFSDILGNHV NASSNSNMQS LLSSFSCDGA STVLNVHETH PLVSSSSSSK RIALESQLPS RVTPFVVSQP EDVIAHNTKV SDLSSLLPPF PSRESFSDYR GVEDSQSNAL YGFTDSLNIL QTGMSNMKGS SGDNGSLSIP YATSTFTSTV GNEYPLNSDM TASSCVDESG FLQSSENGDQ ANPTNRIFVK VQKSGSFGRS LDISKFSSYH ELRSELARMF GLEGLLEDPE RSGWQLVIVD RENDVLLLGD DPWQEFVNNV WYIKILSPHE VQQMGKEGLD LPNGVQAQTQ TLPGNVNGCD DYMNQKGSRN TMNGIPLGSL DY // ID M1BFA1_SOLTU Unreviewed; 361 AA. AC M1BFA1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400043852}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400043852, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400043852} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400043852}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400043852} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400043852}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400043852; PGSC0003DMT400043852; PGSC0003DMG400017022. DR Gramene; PGSC0003DMT400043852; PGSC0003DMT400043852; PGSC0003DMG400017022. DR eggNOG; ENOG410JDIP; Eukaryota. DR eggNOG; ENOG4111D0V; LUCA. DR InParanoid; M1BFA1; -. DR OMA; RTHISSH; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 341 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 341 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 41033 MW; 7777F39CF6A7631D CRC64; MALSEGFCLG NSSSSSTKNN NVVQPKFYKI ILFQDECIRL RIPKGFVKRC CNNILNPVYL EVPSGQVWEV EVQHSQGQIW LTKGWQDFCD YYSISCGHFL MFGYNARSHF NVTIFDLSAA EIEYPYSLRT FHCHETHHAP ETDLSESNYS FDILEDIPRS QKLKEKVPDM IDHSVENLGD GQFSKRKRHE DDVASPSFTR EGQSRKSLWI HKQESKSVYD QNKTVMDKES TTAYQQAKTF KSKNPFIIVF MQPSYVSAPF NLSIASKFAR KYFLENDGNL VLRVPGSGSW SVKCTIGTAN AKVGSGWKAF VLENKLKVGD VCVFEVLKGQ LFVDVIIFRA AGSTLMHDID NHLAAVKMLK I // ID M1BKH7_SOLTU Unreviewed; 531 AA. AC M1BKH7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400047299}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400047299, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400047299} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400047299}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400047299} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400047299}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400047299; -. DR EnsemblPlants; PGSC0003DMT400047299; PGSC0003DMT400047299; PGSC0003DMG400018369. DR Gramene; PGSC0003DMT400047299; PGSC0003DMT400047299; PGSC0003DMG400018369. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; M1BKH7; -. DR OMA; CILQFDE; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR017956; AT_hook_DNA-bd_motif. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00929; ATHOOK. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 41 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 323 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 41 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 323 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 60374 MW; D4D0703714FDB10A CRC64; MIWLHDGWQE FMEHHSVNCW YFLLFKYGQT SCFNVHIFDL AATEIDYQLR SHGNAKSRDV TQDLSHGKDK IVGDKGVTSS VEIVDLLETE QGPESSAKSS ELSHRAKRRK IASGKIKISR CYETRSRTNK LHDNGLLLNA KNLNISGNGS LTKPVGGKLV RRSMKTPIHS AVATGDTRKS FTSKQREKSV GLGRYDRRKR AQQKASETSR AIQTAKMFIP ENPYFLQILE KYNIVRNYIL NLPVEFVRKY MPKTSELIEL QDTDGNKWNV RCIRRKHRVL LSKGWLNFVT DNSLLVGDVC VFELIKDVQA DELMLKVHMF RNRVEENSKN LHTGSLSEPT LSTGKNCILQ FDESKHTESS DAFEPLSSDR TNHKTDAENS SGQQQEKSVV HGSSGNRRKR GRPRDAEANT DIENSSGQQQ EKSVVHGSSG NRRKRGRPRD AEANTDIENS SGQQQEKSVV HGSSGNRRKR GRPRDAEANR ATTAAKMFTP ENPYFMITLG EYHVVRNYIL ADELMLKVHI FRNKVEQNSI I // ID M1BLU5_SOLTU Unreviewed; 237 AA. AC M1BLU5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048031, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048031} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400048031}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048031} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048031}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400048031; PGSC0003DMT400048031; PGSC0003DMG401018664. DR Gramene; PGSC0003DMT400048031; PGSC0003DMT400048031; PGSC0003DMG401018664. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BLU5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 59 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 59 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26786 MW; E8D9D6321F229C67 CRC64; MKLSTSGMGQ QAHEGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LFLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWYPG TSSFQGILRT QCYAVRKVKL YNPEVSL // ID M1BLU7_SOLTU Unreviewed; 206 AA. AC M1BLU7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400048033}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048033, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048033} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400048033}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048033} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048033}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400048033; PGSC0003DMT400048033; PGSC0003DMG401018664. DR Gramene; PGSC0003DMT400048033; PGSC0003DMT400048033; PGSC0003DMG401018664. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BLU7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 190 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 206 AA; 23260 MW; 1F0A738B4EEB8903 CRC64; MKLSTSGMGQ QAHEGENKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPCQELIAR DLHDIEWKFR HIFRGKLRRI LSLLCVDLRR VKCIWL // ID M1BLU8_SOLTU Unreviewed; 752 AA. AC M1BLU8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 37. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048034, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048034} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400048034}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048034} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048034}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006343313.1; XM_006343251.2. DR RefSeq; XP_015162339.1; XM_015306853.1. DR EnsemblPlants; PGSC0003DMT400048034; PGSC0003DMT400048034; PGSC0003DMG401018664. DR GeneID; 102597704; -. DR Gramene; PGSC0003DMT400048034; PGSC0003DMT400048034; PGSC0003DMG401018664. DR InParanoid; M1BLU8; -. DR OMA; VVEHTNN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BLU8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 133 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 625 709 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 31 133 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 752 AA; 84278 MW; C7BC6DC440EC000E CRC64; MTLQPLTPQE QKDTYLPVEL GIPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFSQTPPCQE LIARDLHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN EKNQLFLGIR RATRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSCFTVF FNPRASPSEF VIPLSKYIKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGIGDLDPVR WANSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WYPGTSSFQE NNSEAINGMA WLRGESSEQG PHLLNLQSFG GMLPWMQQRV DPTMLRNDLN QQYQAMLASG LQNFGSGDLM KQQLMQFPQP VQYVQHAGSL NPLLQQQQQQ QAMQQTIHQH MLPAQTQDNL QRQQQQHVSN QTEEQSHHHS YQEAYQIPNS QLQQKQPSNV PSPSFSKPDI ADPSSKFSAS IAPSGMPTAL GSLCSEGTSN FLNFNILGQQ PVIMEQQQQQ QQQQQKSWMA KFAHSQLNTG SNSPSLSGYG KDTSNSQETC SLDAQNQSLF GANVDSSGLL LPTTVSNVAT TSIDADISSM PLGTSGFSNS LYGYVQDSSD MLHNVGQVDA QTAPRTFVKV YKSASLGRSL DITRFNSYHE LRQELGQMFG IEGFLEDPQR SGWQLVFVDR ENDVLLLGDD PWEEFVNNVW YIKILSPEDV QKLGKEEVGS LNRGLPERMS SNNSADGRDF MSGLSSIGSL EY // ID M1BLU9_SOLTU Unreviewed; 615 AA. AC M1BLU9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048035, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048035} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400048035}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048035} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048035}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400048035; PGSC0003DMT400048035; PGSC0003DMG401018664. DR Gramene; PGSC0003DMT400048035; PGSC0003DMT400048035; PGSC0003DMG401018664. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BLU9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 55 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 615 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 55 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 615 AA; 68671 MW; 88293D08A2E71832 CRC64; MTLNGNSGIF SEPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLFLG IRRATRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSCFT VFFNPRASPS EFVIPLSKYI KAVYHTRVSV GMRFRMLFET EESSVRRYMG TITGIGDLDP VRWANSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSLFPLRLK RPWYPGTSSF QENNSEAING MAWLRGESSE QGPHLLNLQS FGGMLPWMQQ RVDPTMLRND LNQQYQAMLA SGLQNFGSGD LMKQQLMQFP QPVQYVQHAG SLNPLLQQQQ QQQAMQQTIH QHMLPAQTQD NLQRQQQQHV SNQTEEQSHH HSYQEAYQIP NSQLQQKQPS NVPSPSFSKP DIADPSSKFS ASIAPSGMPT ALGSLCSEGT SNFLNFNILG QQPVIMEQQQ QQQQQQQKSW MAKFAHSQLN TGSNSPSLSG YGKDTSNSQE TCSLDAQNQS LFGANVDSSG LLLPTTVSNV ATTSIDADIS SMPLGTSGFS NSLYGYVQDS SDMLHNVGQV DAQTAPRTFV KVYKSASLGR SLDITRFNSY HELRQELGQM FGIEGFLEDP QRSGWQLVFV DRENDVLLLG DDPWE // ID M1BLV0_SOLTU Unreviewed; 674 AA. AC M1BLV0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048036, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048036} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400048036}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048036} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048036}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400048036; PGSC0003DMT400048036; PGSC0003DMG401018664. DR Gramene; PGSC0003DMT400048036; PGSC0003DMT400048036; PGSC0003DMG401018664. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BLV0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 55 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 547 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 55 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 674 AA; 75218 MW; FD0962963F6C0ADA CRC64; MTLNGNSGIF SEPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLFLG IRRATRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSCFT VFFNPRASPS EFVIPLSKYI KAVYHTRVSV GMRFRMLFET EESSVRRYMG TITGIGDLDP VRWANSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSLFPLRLK RPWYPGTSSF QENNSEAING MAWLRGESSE QGPHLLNLQS FGGMLPWMQQ RVDPTMLRND LNQQYQAMLA SGLQNFGSGD LMKQQLMQFP QPVQYVQHAG SLNPLLQQQQ QQQAMQQTIH QHMLPAQTQD NLQRQQQQHV SNQTEEQSHH HSYQEAYQIP NSQLQQKQPS NVPSPSFSKP DIADPSSKFS ASIAPSGMPT ALGSLCSEGT SNFLNFNILG QQPVIMEQQQ QQQQQQQKSW MAKFAHSQLN TGSNSPSLSG YGKDTSNSQE TCSLDAQNQS LFGANVDSSG LLLPTTVSNV ATTSIDADIS SMPLGTSGFS NSLYGYVQDS SDMLHNVGQV DAQTAPRTFV KVYKSASLGR SLDITRFNSY HELRQELGQM FGIEGFLEDP QRSGWQLVFV DRENDVLLLG DDPWEEFVNN VWYIKILSPE DVQKLGKEEV GSLNRGLPER MSSNNSADGR DFMSGLSSIG SLEY // ID M1BS61_SOLTU Unreviewed; 580 AA. AC M1BS61; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400051746}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400051746, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400051746} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400051746}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400051746} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400051746}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006352828.1; XM_006352766.1. DR UniGene; Stu.70; -. DR STRING; 4113.PGSC0003DMT400051746; -. DR EnsemblPlants; PGSC0003DMT400051746; PGSC0003DMT400051746; PGSC0003DMG400020088. DR GeneID; 102586621; -. DR Gramene; PGSC0003DMT400051746; PGSC0003DMT400051746; PGSC0003DMG400020088. DR KEGG; sot:102586621; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; M1BS61; -. DR OMA; EIWLDDH; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 446 548 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 446 548 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 580 AA; 65316 MW; 9A21ABF37CC8990A CRC64; MKRELNEVYY GVNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS SSTSNSLPTE QSDPCSSWAV QKSDGDEQNF DTISDQECLN VMDLIDGDHE FLDPVISFFH SGENQQQKEQ ANDEQVSIFQ GDSELALMFL EWLKQNKDNI SAEDMRSIKL KRSTIESASK RLGSTKEGKK QLLRLILDWV EQHRLQKKQM RVEQSIQNSA PFNFNNPNAC LYNASFPDSS PVMTGPIQGY IGDLYSNGSL FAPPYNQTMS GSATSRSWSP SQFTMATASQ YNPFPDNDST DNVAIPDQPL FSAQYDPYQV FDGNSERLAR LGTCATKEAR KNRMARQRRV PLHHYRHQTQ NQRQISNEKS VMMGGKINNC AMSRANSLGN WVYWPCAAAA PPIAMVPLAD TPQALPMERP AVQSQKHGST DKRQACKTEK NLKFLLQKVL KQSDVGNLGR IVLPKKEAES HLPQLETRDG ISIAMEDIGT SRVWNMKYRF WPNNKSRMYL LENTGDFVLA NGLQEGDFIV IYADIKCGKY LIRGVKVRPN GAKSDSTQPA KKIVRKIAAV DSSPFAQAVR // ID M1BSH3_SOLTU Unreviewed; 620 AA. AC M1BSH3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400051934}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400051934, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400051934} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400051934}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400051934} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400051934}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006352829.1; XM_006352767.1. DR STRING; 4113.PGSC0003DMT400051934; -. DR EnsemblPlants; PGSC0003DMT400051934; PGSC0003DMT400051934; PGSC0003DMG400020155. DR GeneID; 102586961; -. DR Gramene; PGSC0003DMT400051934; PGSC0003DMT400051934; PGSC0003DMG400020155. DR KEGG; sot:102586961; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; M1BSH3; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 483 585 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 483 585 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 620 AA; 70266 MW; 2E918D1316CE5068 CRC64; MERELHGVNN EDENTNLVVS VDDDIQMLQQ QQQDCTDFDP MDETDIWLNE NFSTDFTSLQ DFPCMSSSSS TSFSPLTESD PSSGVVLKSD ADEQDFEKKF DTIGDQECLN VMDNVGYIDV NEFLDPMISF LHNENPQEQQ QQPPPQEGDD QGLSFFQGDS ELALMFFEWL KQNKDYISAE DMRSIKLKRS TIESASKRLG STKEGKKQLL RLILDWVEQH RLQKKQMREA EAINQQVLQN SVPYNFDPNA CFYPPQWIPN APFPDSSTPV MTGPIQGYIG DPYSNGGLFP PPYSQTMSGG ATSPTSAEYQ PMDTSQSWSP SQFTMATASQ YNPFPENDST NNVAMPDQSL FGAQYDPYQL FDGNGEILPR LGSCATKEAR KNRMARQRRL RPHHYRHQTR IPRQITNEQS VMMGGEINNN YVMTQANNPG NWVCWPSPPM AMVSQSLPPE RPAMQSQNQQ KQVSASADKK QAFKSEKNLK FLLQKVLKQS DVNNLGRIVL PKKEAERHLP HLETRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN TGDFVKANGL QEGDFIVIYA DMKCGKYLIR GVKVRQNGPK SEGKKQTKKN PRKLSSAAAI SSSPVAQAVR // ID M1BSW4_SOLTU Unreviewed; 287 AA. AC M1BSW4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400052167}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400052167, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400052167} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400052167}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400052167} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400052167}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400052167; -. DR EnsemblPlants; PGSC0003DMT400052167; PGSC0003DMT400052167; PGSC0003DMG400020238. DR Gramene; PGSC0003DMT400052167; PGSC0003DMT400052167; PGSC0003DMG400020238. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR InParanoid; M1BSW4; -. DR OMA; VHRKKRM; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010373; P:negative regulation of gibberellin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0010116; P:positive regulation of abscisic acid biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0008284; P:positive regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0010262; P:somatic embryogenesis; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 188 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 86 188 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 32659 MW; 2A7D18BCEADE1004 CRC64; MMEITEAYGV MADGNNIVVG DNNNNSMMNP PTPTPTPTPT KRSRSQRRRR SSLNFTSLDF LSHVPPPPPP LPAARVLEPT GFRFLFDKQL QNSDVSSLRR IVVPKKAAER YLPALEIKEG FPITMDDMDG IHVWSFRYRY WPNNSSRMYV LENTGDFVQT HELRQGDYFA LHYNDQKQIY GIEARKAGSG AVFRGYEAED VILTDYAQAA DDGNGAIIMN EPEMDMSSFY FPAMDNEMGM SFIYDTSFWN EPAFDFVGGP MTYYSTNVYP MPSFGSIEDS FSVDDFY // ID M1BSW5_SOLTU Unreviewed; 64 AA. AC M1BSW5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400052169}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400052169, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400052169} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400052169}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400052169} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400052169}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400052169; PGSC0003DMT400052169; PGSC0003DMG400020238. DR Gramene; PGSC0003DMT400052169; PGSC0003DMT400052169; PGSC0003DMG400020238. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 63 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 63 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 64 AA; 7740 MW; F21BFCD7C8B54F88 CRC64; MDDMDGIHVW SFRYRYWPNN SSRMYVLENT GDFVQTHELR QGDYFALHYN DQKQIYVSLL FGVA // ID M1BUK6_SOLTU Unreviewed; 290 AA. AC M1BUK6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400053199}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400053199, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400053199} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400053199}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400053199} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400053199}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006344089.1; XM_006344027.2. DR EnsemblPlants; PGSC0003DMT400053199; PGSC0003DMT400053199; PGSC0003DMG400020648. DR GeneID; 102583369; -. DR Gramene; PGSC0003DMT400053199; PGSC0003DMT400053199; PGSC0003DMG400020648. DR KEGG; sot:102583369; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR InParanoid; M1BUK6; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 33353 MW; 7F243C897E502652 CRC64; MANDKTNSYE EVRRQRVLDN KKRFEDLGIL NISKNLSDIT KSEKKSDYKT ELRRVRQKAN DVYMSEPRRS ARARNPVPTY RDEIDLELPS LRKRSKFNSS WASYLARPLE EVKVASYEEK VQALKCAEKL QSNLQSDNPF FIKTMVRSHV YSCFWLGLPT RFCQDHLPKS TVDVLLVDEE GLEYEALFIG KRTGLSGGWR AFALDHKLDD GDALVFELVE PTKFKVYIVR ASQCSSEVDK SSAEKGESEA EETPKSERKK RKNKSEVPTI AKEEVSVVVA SATRRSSRRK // ID M1BUW3_SOLTU Unreviewed; 654 AA. AC M1BUW3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 39. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400053381, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400053381} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400053381}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400053381} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400053381}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006349280.1; XM_006349218.2. DR RefSeq; XP_006349281.1; XM_006349219.2. DR RefSeq; XP_006349282.1; XM_006349220.2. DR RefSeq; XP_015165011.1; XM_015309525.1. DR STRING; 4113.PGSC0003DMT400053380; -. DR EnsemblPlants; PGSC0003DMT400053380; PGSC0003DMT400053380; PGSC0003DMG400020711. DR EnsemblPlants; PGSC0003DMT400053381; PGSC0003DMT400053381; PGSC0003DMG400020711. DR GeneID; 102604408; -. DR Gramene; PGSC0003DMT400053380; PGSC0003DMT400053380; PGSC0003DMG400020711. DR Gramene; PGSC0003DMT400053381; PGSC0003DMT400053381; PGSC0003DMG400020711. DR KEGG; sot:102604408; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BUW3; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 633 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 654 AA; 72726 MW; F7E81C8EE69670EE CRC64; MAHVAANHFG GGTHPGVSAN GALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST HQGVDQHLPS FNLPAKILCK VMNVQLRAES ETDEVYAQIT LLPEQDQGEI TSPDPPPPEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPQLDMS QQPPWQELVA SDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRGDSG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFIVS VNKYLEARNH KLSVGMRFKM RFEGEEVPER RFSGTIVGVG DNPSSRWPDS EWRSLKVHWD EPSSILRPDR VSPWDMEPLV AATPTNTQPP QRNKRARPSV LPSPVQELPA LGMWKSPVDS PSSFSYCDPS RGRDLYPSPK LSSAAKGLGY GENGSMPLST KTMYWSSQSE TCTESVAPAS EKRPANGCRL FGIELRDCPT IDESSSVAMP SAVMEDLPAP SLNIDSDRNS EPSNPIPSVS CEPEKSSLRS THESQSKQIR SCTKVHMQGK AVGRAVDLTR LDSYEDLLKK LEEMFEIEGE LRGSTKKWQV VYTDNEDDMM MVGDDPWHEF CSMVRKIYVY TAEEAKKLSP KIKLPVDDVK PVSDAGIVSN EEKA // ID M1BUW4_SOLTU Unreviewed; 608 AA. AC M1BUW4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400053382, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400053382} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400053382}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400053382} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400053382}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400053382; PGSC0003DMT400053382; PGSC0003DMG400020711. DR Gramene; PGSC0003DMT400053382; PGSC0003DMT400053382; PGSC0003DMG400020711. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BUW4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 608 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 608 AA; 67608 MW; A1EB820B7FC98591 CRC64; MAHVAANHFG GGTHPGVSAN GALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST HQGVDQHLPS FNLPAKILCK VMNVQLRAES ETDEVYAQIT LLPEQDQGEI TSPDPPPPEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPQLDMS QQPPWQELVA SDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRGDSG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFIVS VNKYLEARNH KLSVGMRFKM RFEGEEVPER RFSGTIVGVG DNPSSRWPDS EWRSLKVHWD EPSSILRPDR VSPWDMEPLV AATPTNTQPP QRNKRARPSV LPSPVQELPA LGMWKSPVDS PSSFSYCDPS RGRDLYPSPK LSSAAKGLGY GENGSMPLST KTMYWSSQSE TCTESVAPAS EKRPANGCRL FGIELRDCPT IDESSSVAMP SAVMEDLPAP SLNIDSDRNS EPSNPIPSVS CEPEKSSLRS THESQSKQIR SCTKVHMQGK AVGRAVDLTR LDSYEDLLKK LEEMFEIEGE LRGSTKKWQV VYTDNEDDMM MVGDDPWQ // ID M1BVU2_SOLTU Unreviewed; 167 AA. AC M1BVU2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054093}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400054093, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400054093} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400054093}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400054093} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400054093}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006359110.1; XM_006359048.2. DR STRING; 4113.PGSC0003DMT400054093; -. DR EnsemblPlants; PGSC0003DMT400054093; PGSC0003DMT400054093; PGSC0003DMG400020979. DR GeneID; 102583459; -. DR Gramene; PGSC0003DMT400054093; PGSC0003DMT400054093; PGSC0003DMG400020979. DR KEGG; sot:102583459; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; M1BVU2; -. DR OMA; RLDQGWA; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BVU2; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 167 AA; 18705 MW; 4E8F25F00BA3C14D CRC64; MDSRSSFERV SNHKHSYSTM KQPEIESSGI PEIDNGEYWP LSGKPYVDLI LTKTGVKPIY SMYLPKKMTS ELPSAGARAV SAVLTCGQKK WDMFYGGVKS GHKFSIEWRK FVDDNNLKEG DGLVFELLEC SASKIHFRVQ ILRGDFPAEL NPEDEEGANS DNPILLG // ID M1BVU5_SOLTU Unreviewed; 100 AA. AC M1BVU5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054097}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400054097, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400054097} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400054097}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400054097} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400054097}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400054097; PGSC0003DMT400054097; PGSC0003DMG400020979. DR Gramene; PGSC0003DMT400054097; PGSC0003DMT400054097; PGSC0003DMG400020979. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BVU5; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 100 AA; 11030 MW; A4D83A697BBAEA1B CRC64; MTSELPSAGA RAVSAVLTCG QKKWDMFYGG VKSGHKFSIE WRKFVDDNNL KEGDGLVFEL LECSASKIHF RVQILRGDFP AELNPEDEEG ANSDNPILLG // ID M1BY32_SOLTU Unreviewed; 690 AA. AC M1BY32; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055519, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055519} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400055519}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055519} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055519}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400055519; PGSC0003DMT400055519; PGSC0003DMG400021560. DR Gramene; PGSC0003DMT400055519; PGSC0003DMT400055519; PGSC0003DMG400021560. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BY32; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 604 690 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 690 AA; 76089 MW; 2D5125C77CD04174 CRC64; MDPKDKVKEI EKCLDSQLWH ACAGSMVQMP SISSKVFYFP QGHSEHASGN VDFRSSIRIP SYIPCKVSAI KYMADPETDE VFAKIRLIPV GRNEVEFDDD GVVGMNGSDN QDKPSSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPETSS GWNPAGGNCM VPYGGFSSFL REDENKLMRN GNGNGNNGGN LMNKGKVKAE SVVEAANLAA SGQPFEVIYY PRASTPEFCV KSSLVKSALQ IRWCSGMRFK MPFETEDSSR ISWFMGTISS VQVSDPVRWP DSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPTIHLS PFSPPRKKLR LPQHPDFPLD GHLPMPAFSG NHLLGPNSPF GCLPDNTPAG MQGARHAQYG LSLSDLHFNK LHSSLFPVGF PPLDQAAAAP RRPLNIPMIS KPCNNENISC LLTMGNSAHS TKKSDIGKAP QLVLFGQPIL TEQQISLSCS GDTVSTVRTG NSSSDGNADK IGNVSDGSGS ALNQRGLTER SPCDTFQSEP NTEIGHCKVF MESEDVGRTL DLSLLGSYEE LCRKLANMFG IDNSEMLNHV LYRDTTGSVK QLGDEPYRYV FKKFPMFSNI LHYLFIHIMK // ID M1BY34_SOLTU Unreviewed; 606 AA. AC M1BY34; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055521, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055521} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400055521}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055521} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055521}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400055521; PGSC0003DMT400055521; PGSC0003DMG400021560. DR Gramene; PGSC0003DMT400055521; PGSC0003DMT400055521; PGSC0003DMG400021560. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BY34; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 606 AA; 66219 MW; F93E0D8AFB566ACA CRC64; MDPKDKVKEI EKCLDSQLWH ACAGSMVQMP SISSKVFYFP QGHSEHASGN VDFRSSIRIP SYIPCKVSAI KYMADPETDE VFAKIRLIPV GRNEVEFDDD GVVGMNGSDN QDKPSSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPETSS GWNPAGGNCM VPYGGFSSFL REDENKLMRN GNGNGNNGGN LMNKGKVKAE SVVEAANLAA SGQPFEVIYY PRASTPEFCV KSSLVKSALQ IRWCSGMRFK MPFETEDSSR ISWFMGTISS VQVSDPVRWP DSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPTIHLS PFSPPRKKLR LPQHPDFPLD GHLPMPAFSG NHLLGPNSPF GCLPDNTPAG MQGARHAQYG LSLSDLHFNK LHSSLFPVGF PPLDQAAAAP RRPLNIPMIS KPCNNENISC LLTMGNSAHS TKKSDIGKAP QLVLFGQPIL TEQQISLSCS GDTVSTVRTG NSSSDGNADK IGNVSDGSGS ALNQRGLTER SPCDTFQSEP NTEIGH // ID M1BY35_SOLTU Unreviewed; 692 AA. AC M1BY35; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055522, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055522} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400055522}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055522} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055522}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400055522; -. DR EnsemblPlants; PGSC0003DMT400055522; PGSC0003DMT400055522; PGSC0003DMG400021560. DR Gramene; PGSC0003DMT400055522; PGSC0003DMT400055522; PGSC0003DMG400021560. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; M1BY35; -. DR OMA; PEFCVKS; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1BY35; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 604 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 692 AA; 75929 MW; 048A51EB97D9A05D CRC64; MDPKDKVKEI EKCLDSQLWH ACAGSMVQMP SISSKVFYFP QGHSEHASGN VDFRSSIRIP SYIPCKVSAI KYMADPETDE VFAKIRLIPV GRNEVEFDDD GVVGMNGSDN QDKPSSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPETSS GWNPAGGNCM VPYGGFSSFL REDENKLMRN GNGNGNNGGN LMNKGKVKAE SVVEAANLAA SGQPFEVIYY PRASTPEFCV KSSLVKSALQ IRWCSGMRFK MPFETEDSSR ISWFMGTISS VQVSDPVRWP DSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPTIHLS PFSPPRKKLR LPQHPDFPLD GHLPMPAFSG NHLLGPNSPF GCLPDNTPAG MQGARHAQYG LSLSDLHFNK LHSSLFPVGF PPLDQAAAAP RRPLNIPMIS KPCNNENISC LLTMGNSAHS TKKSDIGKAP QLVLFGQPIL TEQQISLSCS GDTVSTVRTG NSSSDGNADK IGNVSDGSGS ALNQRGLTER SPCDTFQSEP NTEIGHCKVF MESEDVGRTL DLSLLGSYEE LCRKLANMFG IDNSEMLNHV LYRDTTGSVK QLGDEPYSDF MKTARRLTIL TDSSSDNVGI RE // ID M1BY60_SOLTU Unreviewed; 379 AA. AC M1BY60; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400055571}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055571, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055571} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400055571}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400055571} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400055571}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400055571; PGSC0003DMT400055571; PGSC0003DMG400021583. DR Gramene; PGSC0003DMT400055571; PGSC0003DMT400055571; PGSC0003DMG400021583. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR InParanoid; M1BY60; -. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 322 363 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 379 AA; 42574 MW; A99D1AEC613BF4D2 CRC64; MLRAAEVQAN LPCQFPSFVK YMLPSHVSGG FWLSFPKKFC DCHLPKHDDI VVLVDENDEE SPTKYLIDKN GLSGGWRGFS IAHNLLEGDV LVFQLIQPSK FKVFIIRENC LTEIDGAITL LNLDSRARPI KSDHDEEMQI CEAKEEKYLE PPILDINQDD NIEEAMLLPN SDNNPVADQC GNDSDNGSEV LEGIRFSESR IEFKDVKDYS GFSILVDGLI IDSEVPALHI RTKYYDLCRT ENSFLHDHLL PGLNVKLAAG MITETVNIAD AIRACTSSTP RDCLETWDST LKGFECLGMN VGFLRARISK LDSLSSESKN VLASKKVELA EAKEEMRILD EKVLKVKEVI KNVESEIEAL TKKEANFEPK FKALATSPW // ID M1C517_SOLTU Unreviewed; 491 AA. AC M1C517; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400059996, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400059996} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400059996}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400059996} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400059996}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400059996; PGSC0003DMT400059996; PGSC0003DMG400023345. DR EnsemblPlants; PGSC0003DMT400059997; PGSC0003DMT400059997; PGSC0003DMG400023345. DR Gramene; PGSC0003DMT400059996; PGSC0003DMT400059996; PGSC0003DMG400023345. DR Gramene; PGSC0003DMT400059997; PGSC0003DMT400059997; PGSC0003DMG400023345. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1C517; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 491 AA; 55746 MW; F8A15A9B76CA4EEF CRC64; MRQEKPSQEL IATDLQGNEW RFKHAYQGQP RRHSLTNGWS TFVTSKKLLA GDLVVFLRDE TGKLHVGIRR LSYQRCSIGA STFSRQSVEG ALAVASHAFA TRSLFSVYHK PCYNKSSQFI MSLSKYFEGG NHGRGVGMIS RMQHEGEDSS HVRRTNDLDQ ISLSQGQQTT NLMLEEDQYM QDSEAVLDCA QSTMTDLEIR QQTTGSHNNV HCFSPVEDNG LQLHTAVARE NNEGSIPNDT VSIQTRDEDL YELFEDFDFP DSINTSLDTI ALDLGSDWFR STLQEQEETI TPSHPNASED HSRRTSSVLE HPTSFQVMSI STNPSQIPYE GPGRGDEQVP WGGYQVARRT LPILSRVVSR YPDSLVNFRV ASSILQSVYL EILAELVYFL NNLTIVNLSK DQFNVARQHI WDLKLSGIEI GWLENRLLHI DEVFIMESLR QRRQALTRRM EETFKQLDGE LGCIDKELHE LSLKVGPNPP MRLHSVLEGL L // ID M1C520_SOLTU Unreviewed; 650 AA. AC M1C520; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400059999, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400059999} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400059999}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400059999} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400059999}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_015163537.1; XM_015308051.1. DR EnsemblPlants; PGSC0003DMT400059999; PGSC0003DMT400059999; PGSC0003DMG400023345. DR GeneID; 102587577; -. DR Gramene; PGSC0003DMT400059999; PGSC0003DMT400059999; PGSC0003DMG400023345. DR KEGG; sot:102587577; -. DR InParanoid; M1C520; -. DR OMA; ENNEGSI; -. DR OrthoDB; EOG0936128W; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1C520; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 650 AA; 74258 MW; DADE1962F4E1A7E8 CRC64; MVDQPWFSQQ KYPNHMSFEG DDGLRREIWK VCSGSSLDVP KAGERVYYFP RLHVEQLEQS SNQELIERLQ LSNLPPKMLC RVLHIRLLVE HETEEVYAEI RLLPNQDQNE PTAPDFSPLD TPRPQFQSFC KCLTQSDIKS NWGLFVPLKD AVKCFPPLDM RQEKPSQELI ATDLQGNEWR FKHAYQGQPR RHSLTNGWST FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQRCSIGAS TFSRQSVEGA LAVASHAFAT RSLFSVYHKP CYNKSSQFIM SLSKYFEGGN HGRGVGMISR MQHEGEDSSH VRRTNDLDQI SLSQGQQTTN LMLEEDQYMQ DSEAVLDCAQ STMTDLEIRQ QTTGSHNNVH CFSPVEDNGL QLHTAVAREN NEGSIPNDTV SIQTRDEDLY ELFEDFDFPD SINTSLDTIA LDLGSDWFRS TLQEQEETIT PSHPNASEDH SRRTSSVLEH PTSFQVMSIS TNPSQIPYEG PGRGDEQVPW GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE ILAELVYFLN NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFIMESLRQ RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNPPM RLHSVLEGLL // ID M1C954_SOLTU Unreviewed; 676 AA. AC M1C954; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400062489, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400062489} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400062489}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400062489} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400062489}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006365732.1; XM_006365670.2. DR STRING; 4113.PGSC0003DMT400062489; -. DR EnsemblPlants; PGSC0003DMT400062489; PGSC0003DMT400062489; PGSC0003DMG400024320. DR GeneID; 102599257; -. DR Gramene; PGSC0003DMT400062489; PGSC0003DMT400062489; PGSC0003DMG400024320. DR KEGG; sot:102599257; -. DR InParanoid; M1C954; -. DR OMA; FEMERLD; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 579 657 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 103 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 676 AA; 75421 MW; C3BE3F09F11FE305 CRC64; MEVVEEKCVD SQFWHACTGS MVQIPPVNSK VFYFPQGHAE HTYTNVDFTL LPRIPAMILC RVDTVKFLAD TETDEVYAKI RLIPVEDFED DSVVEKTEKP TFFAKTLTQS DANNGGGFSA PRYCAETIFP KLDLKADPPV QVVKAKDVHG ETWNFRHIYR GTPRRHLLTS GWSAFVNKKK LVAGDSVVFL KAENDELCVG IRRVKRGGIG GPETQSGWNS TTGSYGGFLT EDENSMIRSC SNENLISYGG RFRDKGKVSP DEIVRDSYLA ASGQPFEIVY YPGASTPEYC VRASSVHAAM SVQWCSGMRF KMAFETEGSS RISWFMGSIS SVQVADPIRW PHSPWRLLQV TWDEPDLLQN VKSVNPWLVE LVSNMPDINL SHFSPPRKRL CLPQELALDR QFPLPSFSGN PLRSSSPFCY PSDNSTAGIQ GARHVQFGVP LLDLHRSEKL QLGVLQPPAS QQVDADSESP IGTSKVQKES NENVSCLLTM GTSSQMEEAD NVKTPRFLLF GQPILTEQQM SSVLSTHAPP QVQAERDSDW AQLKTERISQ GWKCLSESLS STTFLWNKGY HTAELGASTD HCKVFLDSED VGLTLDLSVL GSYAELYKRL ADMFEMERLD MVTRVLYLDA TGASKQIGDE PFSDFIKTAK RLTILKKSGN SATRKWLTDL PILNVV // ID M1CBG6_SOLTU Unreviewed; 137 AA. AC M1CBG6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063931}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400063931, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400063931} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400063931}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400063931} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400063931}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400063931; PGSC0003DMT400063931; PGSC0003DMG403024846. DR Gramene; PGSC0003DMT400063931; PGSC0003DMT400063931; PGSC0003DMG403024846. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CBG6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 137 AA; 15509 MW; 47FF3627243DBC95 CRC64; MYISFGFDAL FLTSVEKRKL EGDQPHYQCM KGSSEFTARI KEYNVRKRSP YMHIPTEFCQ SNALFQNTTM TLTGPSGKSC PVSLRICNGG KTLYACITRG WHDFFSSNKL KVGDVCIFQL DRSKSDSNSI AIDVRVL // ID M1CBG7_SOLTU Unreviewed; 255 AA. AC M1CBG7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063932}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400063932, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400063932} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400063932}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400063932} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400063932}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006356280.1; XM_006356218.2. DR STRING; 4113.PGSC0003DMT400063932; -. DR EnsemblPlants; PGSC0003DMT400063932; PGSC0003DMT400063932; PGSC0003DMG403024846. DR GeneID; 102592826; -. DR Gramene; PGSC0003DMT400063932; PGSC0003DMT400063932; PGSC0003DMG403024846. DR KEGG; sot:102592826; -. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; M1CBG7; -. DR OMA; WNVEINR; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CBG7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 255 AA; 28742 MW; 94DB41465678DF3A CRC64; MQSSSPELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDK SEKGTIIKGK DTWNVEINRS EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGNMSFSVTL LDSTGCDKKL LEKSEVVPSQ EKKKKVKSGQ SGIEKRKLEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCIFQLDR SKSDSNSIAI DVRVL // ID M1CC79_SOLTU Unreviewed; 144 AA. AC M1CC79; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400064353}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400064353, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400064353} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400064353}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400064353} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400064353}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400064353; PGSC0003DMT400064353; PGSC0003DMG400025003. DR Gramene; PGSC0003DMT400064353; PGSC0003DMT400064353; PGSC0003DMG400025003. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CC79; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 144 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 144 AA; 16147 MW; 93F5389765BE5D29 CRC64; MASPSSSTTT FCFQCEDSSN SVTFRNGWRL RSGKFAQLCH RCACGRVVTP LFQKSLSASD ADLALSRLVI PKKCAEAYFP PLSGPHKIPI NILDTDGKEW NFHFRFWPNS RSKMYVLEGL RDYMVSKKWQ AGDVDAIASV YASP // ID M1CFC4_SOLTU Unreviewed; 214 AA. AC M1CFC4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066310}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066310, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066310} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066310}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066310} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066310}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066310; PGSC0003DMT400066310; PGSC0003DMG400025790. DR Gramene; PGSC0003DMT400066310; PGSC0003DMT400066310; PGSC0003DMG400025790. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFC4; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 24307 MW; 6E79B33A6FA9CC7D CRC64; MAMMHNLYGQ IDLATSAKYR AEEVLSRLST KYPSFMKPMI RSNVSGGFWL SLPRLFCQLH MPRHDITVTL VDESQEEYKT KYLAERNGLS GGWRGFSLSH DLVEGDVLVF QLFRFCKLKV YMVRANYLAE VDAALVLLHL DAHHKQIDPG LDYETLNIVD AVKASKLSDP PNGTFSSWNT RPTQLEQLEI RPFSSGYSIE PALTLSGAEM VFRL // ID M1CFC5_SOLTU Unreviewed; 156 AA. AC M1CFC5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066311}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066311, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066311} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066311}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066311} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066311}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066311; PGSC0003DMT400066311; PGSC0003DMG400025790. DR Gramene; PGSC0003DMT400066311; PGSC0003DMT400066311; PGSC0003DMG400025790. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFC5; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 156 AA; 18168 MW; 4C0EEA99FA3F529A CRC64; MKDRSLELKG WHKQVVCKKS KKRGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVR IRKSSF // ID M1CFC6_SOLTU Unreviewed; 295 AA. AC M1CFC6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066312}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066312, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066312} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066312}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066312} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066312}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006346414.1; XM_006346352.2. DR RefSeq; XP_006346415.1; XM_006346353.2. DR RefSeq; XP_015163758.1; XM_015308272.1. DR EnsemblPlants; PGSC0003DMT400066312; PGSC0003DMT400066312; PGSC0003DMG400025790. DR GeneID; 102592894; -. DR Gramene; PGSC0003DMT400066312; PGSC0003DMT400066312; PGSC0003DMG400025790. DR KEGG; sot:102592894; -. DR InParanoid; M1CFC6; -. DR OMA; MPRHDIT; -. DR OrthoDB; EOG093614ZL; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFC6; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33889 MW; 201D46D6619DB4EC CRC64; MKDRSLELKG WHKQVVCKKS KKRGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPVH QRQHNISMKQ VGIKRQRLSS QEGDDYSTEN MLHKHSHSRN MFKNLDLPSK GLDYETLNIV DAVKASKLSD PPNGTFSSWN TRPTQLEQLE IRPFSSGYSI EPALTLSGAE MVFRL // ID M1CFC7_SOLTU Unreviewed; 179 AA. AC M1CFC7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066313}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066313, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066313} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066313}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066313} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066313}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066313; PGSC0003DMT400066313; PGSC0003DMG400025790. DR Gramene; PGSC0003DMT400066313; PGSC0003DMT400066313; PGSC0003DMG400025790. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFC7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 179 AA; 20649 MW; E6C6AA51B0C9C35A CRC64; MKDRSLELKG WHKQVVCKKS KKRGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPG // ID M1CFC9_SOLTU Unreviewed; 270 AA. AC M1CFC9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066315}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066315, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066315} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066315}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066315} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066315}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066315; PGSC0003DMT400066315; PGSC0003DMG400025791. DR Gramene; PGSC0003DMT400066315; PGSC0003DMT400066315; PGSC0003DMG400025791. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFC9; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 31062 MW; 6D0488031FE3338A CRC64; MNIKFDIDDG IKTVQLDRKK MIPKKPRSVK SKAKQVKSNH PRKAESIKRK GSKRTRINDL YDDVEAKYSV MERAEKVLSR LPDEFPSFAK CMLPSNVAHG FWLHLPKSFC NMHLPSSDTT VILVDEWGNE YKTSYLLERN GLSAGWRGFS ISHRLLKGDL LIFRLIEPCK MKVYIVRVNG QEVVDAALCL MNWETLNTST ELDLVRKDNR KRKKAKHLAE PFFVDLSKPK EHVQNDSHCA VDLNVSPSEH RSENNSEDLD SEVLEGMKHS // ID M1CFD0_SOLTU Unreviewed; 277 AA. AC M1CFD0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066316}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066316, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066316} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066316}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066316} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066316}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066316; PGSC0003DMT400066316; PGSC0003DMG400025791. DR Gramene; PGSC0003DMT400066316; PGSC0003DMT400066316; PGSC0003DMG400025791. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFD0; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 277 AA; 31706 MW; CC86C0BD09264757 CRC64; MIPKKPRSVK SKAKQVKSNH PRKAESIKRK GSKRTRINDL YDDVEAKYSV MERAEKVLSR LPDEFPSFAK CMLPSNVAHG FWLHLPKSFC NMHLPSSDTT VILVDEWGNE YKTSYLLERN GLSAGWRGFS ISHRLLKGDL LIFRLIEPCK MKVYIVRVNG QEVVDAALCL MNWETLNTST ELDLVRKDNR KRKKAKHLAE PFFVDLSKPK EHVQNDSHCA VDLNVSPSEH RSENNSEDLD SEVLEGSDVT NRLQSNEICC SETSFLHDNP HKSIACR // ID M1CFD2_SOLTU Unreviewed; 227 AA. AC M1CFD2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066318}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066318, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066318} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066318}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066318} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066318}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066317; PGSC0003DMT400066317; PGSC0003DMG400025791. DR EnsemblPlants; PGSC0003DMT400066318; PGSC0003DMT400066318; PGSC0003DMG400025791. DR Gramene; PGSC0003DMT400066317; PGSC0003DMT400066317; PGSC0003DMG400025791. DR Gramene; PGSC0003DMT400066318; PGSC0003DMT400066318; PGSC0003DMG400025791. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFD2; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 25926 MW; DDA1BF32B17D6D9F CRC64; MERAEKVLSR LPDEFPSFAK CMLPSNVAHG FWLHLPKSFC NMHLPSSDTT VILVDEWGNE YKTSYLLERN GLSAGWRGFS ISHRLLKGDL LIFRLIEPCK MKVYIVRVNG QEVVDAALCL MNWETLNTST ELDLVRKDNR KRKKAKHLAE PFFVDLSKPK EHVQNDSHCA VDLNVSPSEH RSENNSEDLD SEVLEGSDVT NRLQSNEICC SETSFLHDNP HKSIACR // ID M1CFD3_SOLTU Unreviewed; 252 AA. AC M1CFD3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066320}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066320, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066320} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066320}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066320} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066320}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066320; PGSC0003DMT400066320; PGSC0003DMG400025791. DR Gramene; PGSC0003DMT400066320; PGSC0003DMT400066320; PGSC0003DMG400025791. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFD3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 252 AA; 28874 MW; 44E5BF8A6551AA5D CRC64; MEERNFIPVK RRTKSCKKRQ QQVEPHRLKS TSHSSASTST QTDPLSMIKT VQLDRKKMIP KKPRSVKSKA KQVKSNHPRK AESIKRKGSK RTRINDLYDD VEAKYSVMER AEKVLSRLPD EFPSFAKCML PSNVAHGFWL HLPKSFCNMH LPSSDTTVIL VDEWGNEYKT SYLLERNGLS AGWRGFSISH RLLKGDLLIF RLIEPCKMKV YIVRVNGQEV VDAALCLMNW ETLNTSTELG NFVLSACPPL LL // ID M1CFD4_SOLTU Unreviewed; 307 AA. AC M1CFD4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066321}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066321, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066321} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066321}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066321} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066321}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066321; PGSC0003DMT400066321; PGSC0003DMG400025791. DR Gramene; PGSC0003DMT400066321; PGSC0003DMT400066321; PGSC0003DMG400025791. DR InParanoid; M1CFD4; -. DR OMA; SCKKRQQ; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFD4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 307 AA; 35353 MW; 6B019FBAB854F50B CRC64; MEERNFIPVK RRTKSCKKRQ QQVEPHRLKS TSHSSASTST QTDPLSMIKT VQLDRKKMIP KKPRSVKSKA KQVKSNHPRK AESIKRKGSK RTRINDLYDD VEAKYSVMER AEKVLSRLPD EFPSFAKCML PSNVAHGFWL HLPKSFCNMH LPSSDTTVIL VDEWGNEYKT SYLLERNGLS AGWRGFSISH RLLKGDLLIF RLIEPCKMKV YIVRVNGQEV VDAALCLMNW ETLNTSTELD LVRKDNRKRK KAKHLAEPFF VDLSKPKEHV QNDSHCAVDL NVSPSEHRSE NNSEDLDSEV LEGMKHS // ID M1CFD6_SOLTU Unreviewed; 224 AA. AC M1CFD6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066323}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066323, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066323} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066323}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066323} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066323}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006346419.1; XM_006346357.2. DR STRING; 4113.PGSC0003DMT400066323; -. DR EnsemblPlants; PGSC0003DMT400066323; PGSC0003DMT400066323; PGSC0003DMG400025792. DR GeneID; 102594203; -. DR Gramene; PGSC0003DMT400066323; PGSC0003DMT400066323; PGSC0003DMG400025792. DR KEGG; sot:102594203; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR InParanoid; M1CFD6; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 1 35 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 224 AA; 25911 MW; 8302FC8BA85BBBB2 CRC64; MAELKKKLTY EECRLKRIEE NKKRWQELKL TMLAEDVHNA TSPKPSPMKK VKPTVRQEVD RSAVRRSNRV ADKPPPNYKE VLIEPLGRPR SYKRKDLLNR VYAADEDRQY AIGRAEQLQS EFDADFPSFV KPMLQSHVTG GFWLGLPVHF CKTHLPKHDE YVTLVDENGD EFQTKYLALK TGLSGGWRGF ALDHELVDGD ALVFQLVAPT RFKVYIIRVN QAED // ID M1CFK6_SOLTU Unreviewed; 290 AA. AC M1CFK6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066469}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066469, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066469} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066469}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066469} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066469}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066469; PGSC0003DMT400066469; PGSC0003DMG402025831. DR Gramene; PGSC0003DMT400066469; PGSC0003DMT400066469; PGSC0003DMG402025831. DR OrthoDB; EOG09360TDR; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0009512; C:cytochrome b6f complex; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR HAMAP; MF_00396; Cytb6_f_PetM; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012595; PetM_cyt_b6/f_cplx_su7. DR Pfam; PF02362; B3; 1. DR Pfam; PF08041; PetM; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 258 280 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 69 166 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 166 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 3 26 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 290 AA; 32329 MW; 03DBB561178728D0 CRC64; MEEEDEEEEE EDYDDDDDEE EEETEEDEET EEDERTVGGK RDTACKVRDV PDQYGADIFK SGRATQPKNL YFVAKIRVKR RDQLYIPIDV VRDYKLELPS RMIIRDSAGR EFETKLKNWK DGRIWLAGGW RSLCRWNLVE KDDRCICEFM RGKGKRGLYL QVGGQKTMAT MTTFSAATVS SAAIIGTGRN SSQKGTKVKY ISGLNSFEGL KANNHVASLG LPMSTEQAFA KIVSSLKTPS SQANGGALSS TCNAALEIFR IATIIPGLVL VGVAVGFVLL RIEATVEESE // ID M1CFK7_SOLTU Unreviewed; 375 AA. AC M1CFK7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066470}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066470, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066470} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066470}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066470} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066470}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066470; PGSC0003DMT400066470; PGSC0003DMG401025831. DR Gramene; PGSC0003DMT400066470; PGSC0003DMT400066470; PGSC0003DMG401025831. DR eggNOG; ENOG410JQKT; Eukaryota. DR eggNOG; ENOG4111C6S; LUCA. DR InParanoid; M1CFK7; -. DR OrthoDB; EOG0936170P; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFK7; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 13 37 {ECO:0000256|SAM:Coils}. FT COILED 195 218 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 375 AA; 43794 MW; DAECF93CD8BAB15B CRC64; MGKNFVKIGK APRSKHRHAE ETEEEEYEDE EEEEEQNEWA GIVEKNASCS KAGYQRATAR KVRDSHDQFG ADIFKSGHAT RPRNPYFIAK LQAKRRDQLY VPIDVIKGFN FELPSSITIR DSTGREFETK LKNWKDGRIW LIGGWHSLCR WNLVEKDVKC ICEFVKGKGN KVLYLQVQIL HEGSVSNSNT KHMEEEDEEE EEEDYDDDDD EEEEETEEDE ETEEDERTGT FKKNVSHSKV GGKRDTACKV RDVPDQYGAD IFKSGRATQP KNLYFVAKIR VKRRDQLYIP IDVVRDYKLE LPSRMIIRDS AGREFETKLK NWKDGRIWLA GGWRSLCRWN LVEKDDRCIC EFMRGKGKRG LYLQVHVLHE GSVSE // ID M1CFK8_SOLTU Unreviewed; 183 AA. AC M1CFK8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066471}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066471, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066471} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400066471}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400066471} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400066471}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400066471; PGSC0003DMT400066471; PGSC0003DMG401025831. DR Gramene; PGSC0003DMT400066471; PGSC0003DMT400066471; PGSC0003DMG401025831. DR eggNOG; ENOG410JQKT; Eukaryota. DR eggNOG; ENOG4111C6S; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CFK8; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 3 26 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 183 AA; 21588 MW; 50CA31C722E5F8B7 CRC64; MEEEDEEEEE EDYDDDDDEE EEETEEDEET EEDERTGTFK KNVSHSKVGG KRDTACKVRD VPDQYGADIF KSGRATQPKN LYFVAKIRVK RRDQLYIPID VVRDYKLELP SRMIIRDSAG REFETKLKNW KDGRIWLAGG WRSLCRWNLV EKDDRCICEF MRGKGKRGLY LQVHVLHEGS VSE // ID M1CHN8_SOLTU Unreviewed; 254 AA. AC M1CHN8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400067664}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400067664, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400067664} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400067664}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400067664} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400067664}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400067664; PGSC0003DMT400067664; PGSC0003DMG400026314. DR Gramene; PGSC0003DMT400067664; PGSC0003DMT400067664; PGSC0003DMG400026314. DR InParanoid; M1CHN8; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 254 AA; 29069 MW; D5B6B44C291D0BD1 CRC64; MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW PMKVNGHRFE AGWVEFVEQQ GLKLGDILMF RHEGNMEFEV SIFDSTHCDR DYVEYMEEGG GGGGGDHTSE EKFKFKDIMK KPSNMSLLNA QVVTSTSGDD HHPSFSSTVK PYCFTRAFLS NGLMNRKCEM VLKDEAQRCW SVWIGRAGRH FGILRGWTKF RAENGLRVGD AYKFELIKNG EMPIAQFHCK CSFSSNVVMY FCQD // ID M1CLL4_SOLTU Unreviewed; 217 AA. AC M1CLL4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400070032}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400070032, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400070032} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400070032}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400070032} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400070032}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400070032; PGSC0003DMT400070032; PGSC0003DMG400027236. DR EnsemblPlants; PGSC0003DMT400070033; PGSC0003DMT400070033; PGSC0003DMG400027236. DR EnsemblPlants; PGSC0003DMT400070035; PGSC0003DMT400070035; PGSC0003DMG400027236. DR Gramene; PGSC0003DMT400070032; PGSC0003DMT400070032; PGSC0003DMG400027236. DR Gramene; PGSC0003DMT400070033; PGSC0003DMT400070033; PGSC0003DMG400027236. DR Gramene; PGSC0003DMT400070035; PGSC0003DMT400070035; PGSC0003DMG400027236. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CLL4; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 217 AA; 24361 MW; 34A3358F6E1A5213 CRC64; MVDRREEHPA ETAARPEKQP AGMANRQGQG EPKPVDIPEI TPHFFKIILS PHASKLHIPN EFVTEHGANL GDIVLLEVPN GVVWKIKLLN SSGMVWLNEG WNKFKEYYSI ACGYFLLFRY KGNSQFSVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVPP EENGINLTPP GEPPKENRIN LTPPDDPPEE DVIYLPPPGI YTMEELSLSS MPSRPKV // ID M1CLL6_SOLTU Unreviewed; 228 AA. AC M1CLL6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400070034}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400070034, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400070034} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400070034}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400070034} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400070034}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006350211.1; XM_006350149.2. DR EnsemblPlants; PGSC0003DMT400070034; PGSC0003DMT400070034; PGSC0003DMG400027236. DR GeneID; 102584288; -. DR Gramene; PGSC0003DMT400070034; PGSC0003DMT400070034; PGSC0003DMG400027236. DR KEGG; sot:102584288; -. DR InParanoid; M1CLL6; -. DR OMA; NSSGMVW; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CLL6; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 25629 MW; 3D793D389154E8A8 CRC64; MSLPQEEQPV EMVDRREEHP AETAARPEKQ PAGMANRQGQ GEPKPVDIPE ITPHFFKIIL SPHASKLHIP NEFVTEHGAN LGDIVLLEVP NGVVWKIKLL NSSGMVWLNE GWNKFKEYYS IACGYFLLFR YKGNSQFSVF IFDLSASEIE YPPGPNEDMT PENRSVLCVP PEENGINLTP PGEPPKENRI NLTPPDDPPE EDVIYLPPPG IYTMEELSLS SMPSRPKV // ID M1CNT2_SOLTU Unreviewed; 361 AA. AC M1CNT2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400071449, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400071449} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400071449}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400071449} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400071449}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400071449; PGSC0003DMT400071449; PGSC0003DMG400027798. DR Gramene; PGSC0003DMT400071449; PGSC0003DMT400071449; PGSC0003DMG400027798. DR InParanoid; M1CNT2; -. DR OMA; FMRRTAN; -. DR OrthoDB; EOG093614IP; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 40054 MW; C6939BE4746CCF73 CRC64; MQAPTASDRE VDPIVWRAIA GKSVQIPPVG SRVYYFPQGH AEHATFTSPG VLSPGIPAFI LCRVLSVRFL AESDTDEAFA KIFLHPISPS EVDEVTVSEE EEVEDKIVSF VKILTPSDAN NGGGFSVPRF CADSIFPRLN FEAEPPVQNL SIRDIKGGVW EFRHIYRGTP RRHLLTTGWS KFVNSKQLVA GDSAVFMRRT ANDQLYVGVR RAIKRNDNSQ KWTSSFLMRE HINSGGSPDV SWGIRKGRMT MEAVAAVAEM AARGVPFEVS CNPRDDWADF VVKAQAVEMA LNIPWTVGTR VKMAVETEDS SRTACFQGTV SSVILTESGP WRGSPWRMLQ DRQVRVATEL VVGQRTALKQ L // ID M1CQ49_SOLTU Unreviewed; 288 AA. AC M1CQ49; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400072354}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400072354, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400072354} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400072354}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400072354} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400072354}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400072354; -. DR EnsemblPlants; PGSC0003DMT400072354; PGSC0003DMT400072354; PGSC0003DMG400028159. DR Gramene; PGSC0003DMT400072354; PGSC0003DMT400072354; PGSC0003DMG400028159. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; M1CQ49; -. DR OMA; NLECEVD; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CQ49; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 288 AA; 32649 MW; 14B38792C6ABFF81 CRC64; MEESSRNSSS PPKQNSNQLE EIEIPKEHLF EKPLTPSDVG KLNRLVIPKQ NAEKYFPLND SINDSGEKGF LLSFEDELGK LWKFRYSYWN SSQSYVLTKG WSRFVKEKKL DAGDVVLFER HRVDGDRQFI GWRRKNGDAV AAAAATTVAP PGGGGGWGQV HPFPSAGVPY QTDFLHAGRG VMHNQLTTPN GNNTRRQVRL FGVNLECEVD DSSSWSESST PDGSISSNHH QQSQEYYQSQ AGQHYYQYQV HYSNPHATPP ASSYNNNHHY NTDMDHSRDV NQMRYHQG // ID M1CQ50_SOLTU Unreviewed; 189 AA. AC M1CQ50; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400072355}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400072355, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400072355} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400072355}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400072355} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400072355}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400072355; PGSC0003DMT400072355; PGSC0003DMG400028159. DR Gramene; PGSC0003DMT400072355; PGSC0003DMT400072355; PGSC0003DMG400028159. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CQ50; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 189 AA; 21286 MW; 2B99E6CA22BACE73 CRC64; MEESSRNSSS PPKQNSNQLE EIEIPKEHLF EKPLTPSDVG KLNRLVIPKQ NAEKYFPLND SINDSGEKGF LLSFEDELGK LWKFRYSYWN SSQSYVLTKG WSRFVKEKKL DAGDVVLFER HRVDGDRQFI GWRRKNGDAV AAAAATTVAP PGGGGGWGQV HPFPSAGVPY QTDFLHAGCV FFFNTYLSH // ID M1CTA2_SOLTU Unreviewed; 883 AA. AC M1CTA2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400074168, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400074168} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400074168}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400074168} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400074168}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006351990.1; XM_006351928.2. DR EnsemblPlants; PGSC0003DMT400074168; PGSC0003DMT400074168; PGSC0003DMG400028826. DR GeneID; 102598519; -. DR Gramene; PGSC0003DMT400074168; PGSC0003DMT400074168; PGSC0003DMG400028826. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CTA2; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 747 831 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 883 AA; 97900 MW; BD710CFB3F8B1918 CRC64; MKVSTSGFNS QPEEGEKKCL NSELWHACAG PLVSLPHVGT RVVYFPQGHS EQVAASTNKE INGHIPNYPG LPPQLICQLH NVTMDADVET DEVYAQMTLQ PLTPQEQKDV CLLPAELGTL SKQPNNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPVQELIG KDLHGNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNENN QLLLGIRRAN RPQTVLPSSV LSSDSMHIGL LAAAAHATAT NSRFTIFFNP RACPSEFVIP LAKYAKAVYH TRVSVGMRFR MLFETEESSI RRYMGTITGI GDLDPARWPN SHWQSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF SLRLKRPWPP GLPSFPGLSN GDMTMSSQLP WLHGGMGDQG IQSLNFQGFG VTPFVHPRFD ASMLGLQPDI LQAMATLDSS KLANQPLMQF QHIPSGSASS IQNQLLHPSN LQHTFLQGLP ENQLISQAQM LQQQLQCHQS YNAQQQQLQR QQLYHDQQLQ EPHQVHLQRQ DQQQTKAQLC SATQSQLSHL QVLGSTGSQQ TFSDLVGNHI NTSNNRSTMQ SLLSSFSRNG ASTFLNMPET NSLVSPSSSS KRIALESQIP SQAPYIVTQA EVLTVPNTKV SDFSTLFSPN PGRQVLDYQA VAVSQNNALF GVNGMSNLKG NSPENRSLPM PYATSAFTST VGSEYPVTSD MTTSSCVDES GVLQSSENVD QANSLTETFV KVYKSESFGR SLDISKFSSY NELRSELARM FGLEGLLEDP ERSGWQLVFV DRENDVLLLG DDPWHEFVNS VWYIKILSPL EVQQMGKEGL DLPSAGKTQR ITSNGNGNGC DDFMNRNHSC NIMNGIPLGS LDY // ID M1CTA3_SOLTU Unreviewed; 884 AA. AC M1CTA3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400074169, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400074169} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400074169}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400074169} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400074169}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006351989.1; XM_006351927.2. DR STRING; 4113.PGSC0003DMT400074169; -. DR EnsemblPlants; PGSC0003DMT400074169; PGSC0003DMT400074169; PGSC0003DMG400028826. DR GeneID; 102598519; -. DR Gramene; PGSC0003DMT400074169; PGSC0003DMT400074169; PGSC0003DMG400028826. DR KEGG; sot:102598519; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; M1CTA3; -. DR OMA; PELYQAM; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1CTA3; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 748 832 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 884 AA; 97971 MW; 74A43FD5B38BB27E CRC64; MKVSTSGFNS QPEEAGEKKC LNSELWHACA GPLVSLPHVG TRVVYFPQGH SEQVAASTNK EINGHIPNYP GLPPQLICQL HNVTMDADVE TDEVYAQMTL QPLTPQEQKD VCLLPAELGT LSKQPNNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPVQELI GKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWNEN NQLLLGIRRA NRPQTVLPSS VLSSDSMHIG LLAAAAHATA TNSRFTIFFN PRACPSEFVI PLAKYAKAVY HTRVSVGMRF RMLFETEESS IRRYMGTITG IGDLDPARWP NSHWQSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FSLRLKRPWP PGLPSFPGLS NGDMTMSSQL PWLHGGMGDQ GIQSLNFQGF GVTPFVHPRF DASMLGLQPD ILQAMATLDS SKLANQPLMQ FQHIPSGSAS SIQNQLLHPS NLQHTFLQGL PENQLISQAQ MLQQQLQCHQ SYNAQQQQLQ RQQLYHDQQL QEPHQVHLQR QDQQQTKAQL CSATQSQLSH LQVLGSTGSQ QTFSDLVGNH INTSNNRSTM QSLLSSFSRN GASTFLNMPE TNSLVSPSSS SKRIALESQI PSQAPYIVTQ AEVLTVPNTK VSDFSTLFSP NPGRQVLDYQ AVAVSQNNAL FGVNGMSNLK GNSPENRSLP MPYATSAFTS TVGSEYPVTS DMTTSSCVDE SGVLQSSENV DQANSLTETF VKVYKSESFG RSLDISKFSS YNELRSELAR MFGLEGLLED PERSGWQLVF VDRENDVLLL GDDPWHEFVN SVWYIKILSP LEVQQMGKEG LDLPSAGKTQ RITSNGNGNG CDDFMNRNHS CNIMNGIPLG SLDY // ID M1D283_SOLTU Unreviewed; 320 AA. AC M1D283; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400079655}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079655, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079655} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400079655}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079655} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079655}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_015164551.1; XM_015309065.1. DR EnsemblPlants; PGSC0003DMT400079655; PGSC0003DMT400079655; PGSC0003DMG400031023. DR GeneID; 102578642; -. DR Gramene; PGSC0003DMT400079655; PGSC0003DMT400079655; PGSC0003DMG400031023. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1D283; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 65 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 65 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 35449 MW; B470843872BD386F CRC64; MDQEIELEDS TGQRWKVGIS NHNGSLAIRQ GWQTFSSEHD LKLGDFLVFH YIQGQHFVVQ IYGTSGCQKI NFYNGTCTGK ERPRTNSTAT SHDELSTATD INLREKKNST PSVTAVPVSD RAGQLPVTTI FASNIDADTL KSAENGVKGK KTRVDKRELK QMAAKTRCPS KKLNGKEPKI IEKDGQGCPE AEIGNNKAIE SEPADSGDTS FLDAGNFSCL LRVDGRSFLE LPQSWPEVLP SSKKIRKIII YLKGPDNRTR PVIYHEDFGS KVLTGNWASF TQVYGLKLGD ECLFQLSNLS ERMFTVKATH KVDGTQTTLS // ID M1D284_SOLTU Unreviewed; 422 AA. AC M1D284; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400079657}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079657, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079657} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400079657}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079657} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079657}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400079657; PGSC0003DMT400079657; PGSC0003DMG400031024. DR Gramene; PGSC0003DMT400079657; PGSC0003DMT400079657; PGSC0003DMG400031024. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1D284; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 352 414 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 352 414 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 46899 MW; FBA5B049107C3039 CRC64; MRSEDPISRS RVDRFLVSTS LEELAPNVIQ IPLLRRFARL VSHLTDQETY LEDSSGQQWR VGICNHNGSL AIRQGWRTFS SEHGLIMGDF LVFHYIQGQH FVVQIYGTSG CQKINSYNGT HTGKKRPRTN STETSHDELS PETDINLRKK RNSTPSVTAV PESERAGHQP VTTTFASNID AETGEQQVVP QEEGTSDVLQ CENRPHNHTD IISQRESSSV DVVPLEMELL TLKAPLLDVK ITQTEKISGP VNNISLLGQT DENNHHVGLI SSTSLKSAEN GSNGKEPKIT EKDCQGYPEA VIGNNIAIKS EPADSGDTSF PDAGNFSCSL QELPQSWPQV IVGRRKMGKI IIYLKGPDNR RWPVIYHENF GSKILAGNWE LFAAVYGLKP GDECLFQLSN QSKRMFTVHV AHKVDVTQTT LS // ID M1D285_SOLTU Unreviewed; 468 AA. AC M1D285; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400079658}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079658, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079658} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400079658}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079658} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079658}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006348062.1; XM_006348000.2. DR EnsemblPlants; PGSC0003DMT400079658; PGSC0003DMT400079658; PGSC0003DMG400031024. DR GeneID; 102578316; -. DR Gramene; PGSC0003DMT400079658; PGSC0003DMT400079658; PGSC0003DMG400031024. DR KEGG; sot:102578316; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1D285; -. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1D285; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 362 460 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 362 460 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 468 AA; 52361 MW; 8A9EFE71EFD0CA2E CRC64; MVHHNEACEM CTRTCMLIHG QRDPSPIVNS FFKVMIDKRF SKILYFPPRF ARLVSHLTDQ ETYLEDSSGQ QWRVGICNHN GSLAIRQGWR TFSSEHGLIM GDFLVFHYIQ GQHFVVQIYG TSGCQKINSY NGTHTGKKRP RTNSTETSHD ELSPETDINL RKKRNSTPSV TAVPESERAG HQPVTTTFAS NIDAETGEQQ VVPQEEGTSD VLQCENRPHN HTDIISQRES SSVDVVPLEM ELLTLKAPLL DVKITQTEKI SGPVNNISLL GQTDENNHHV GLISSTSLKS AENGSNAKET RVDKLELKEM EAKTRCPSKK LNGKEPKITE KDCQGYPEAV IGNNIAIKSE PADSGDTSFP DAGNFSCSLQ VDGRNFLELP QSWPQVIVGR RKMGKIIIYL KGPDNRRWPV IYHENFGSKI LAGNWELFAA VYGLKPGDEC LFQLSNQSKR MFTVHVAHKV DVTQTTLS // ID M1D286_SOLTU Unreviewed; 350 AA. AC M1D286; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400079659}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079659, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079659} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400079659}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400079659} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400079659}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400079659; PGSC0003DMT400079659; PGSC0003DMG400031024. DR Gramene; PGSC0003DMT400079659; PGSC0003DMT400079659; PGSC0003DMG400031024. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1D286; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39149 MW; 31BEB3313A632786 CRC64; MVHHNEACEM CTRTCMLIHG QRDPSPIVNS FFKVMIDKRF SKILYFPPRF ARLVSHLTDQ ETYLEDSSGQ QWRVGICNHN GSLAIRQGWR TFSSEHGLIM GDFLVFHYIQ GQHFVVQIYG TSGCQKINSY NGTHTGKKRP RTNSTETSHD ELSPETDINL RKKRNSTPSV TAVPESERAG HQPVTTTFAS NIDAETGEQQ VVPQEEGTSD VLQCENRPHN HTDIISQRES SSVDVVPLEM ELLTLKAPLL DVKITQTEKI SGPVNNISLL GQTDENNHHV GLISSTSLKS AENGSNAKET RVDKLELKEM EAKTRCPSKK LNGITFSYLV YNSLISLSHN CSSSHACIHC // ID M1D4H7_SOLTU Unreviewed; 748 AA. AC M1D4H7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400081282, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400081282} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400081282}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400081282} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400081282}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006364312.1; XM_006364250.2. DR RefSeq; XP_006364313.1; XM_006364251.2. DR STRING; 4113.PGSC0003DMT400081282; -. DR EnsemblPlants; PGSC0003DMT400081282; PGSC0003DMT400081282; PGSC0003DMG400031769. DR GeneID; 102582172; -. DR Gramene; PGSC0003DMT400081282; PGSC0003DMT400081282; PGSC0003DMG400031769. DR KEGG; sot:102582172; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR InParanoid; M1D4H7; -. DR KO; K14486; -. DR OMA; IVDYPFC; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1D4H7; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 748 AA; 81684 MW; 124C89BBD46F1D82 CRC64; MMCGLIDLNT VDNDDAGEET AAPVSLDSPA SSSVASGSSD LTSSTTPAVA SVCMELWHAC AGPLISLPKK GSAVVYLPQG HLEHLSEYPP IACNLPPHVF CRVVDVKLQA DAATDEVYAQ VSLVPDNQQI EQKWKDGDID ADTEEEEIEG AGKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFAPLD YRQQRPSQEL VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRTG DGELRLGVRR AAQAKTCSSY LARYSKPLNV SGIEDAVNVI SSRNVFNICY NPRGNSSDFI VPYHKFSKTL AHPFSAGMRF KMRVETEDAA EQRFTGLVVG FSDVDPVRWP GSKWRCLLVR WDDLDVSRHN RVSPWEIEPS GSAPVSSSLV MPSAKRTRVG FPISKADFPI PREGIAVSDF GESSRFQKVL QGQEILRMHA PYGGLDARSP RPAGIRCFPG FPSSGISRMG NSIRPLLGDT DKSHESIGFS ESLRFNKVLQ GQEIFTSPPY GRAQAGIQMQ EKGRTGIFVG IQVPNHGNRW PAPNQDNNTR CKPINPVSAS SPPSALTFQH PSPPASKFQA MFNHKHGKHD LGNQASLDMS ENCCRYLTSG SHTEDISRKE GTQGMSSFGF LKEQKQTGIS YLSLGTQSSF KGNQNLVSTC KTSCRIFGFP LTESKISATR AETPSEAVYS LGLETTFLPS GDGKLQPGPP LVTNVVGTNF TKVNDLYAAR DVLLDIAL // ID M1D4H8_SOLTU Unreviewed; 747 AA. AC M1D4H8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400081283, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400081283} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400081283}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400081283} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400081283}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR RefSeq; XP_006364315.1; XM_006364253.2. DR EnsemblPlants; PGSC0003DMT400081283; PGSC0003DMT400081283; PGSC0003DMG400031769. DR GeneID; 102582172; -. DR Gramene; PGSC0003DMT400081283; PGSC0003DMT400081283; PGSC0003DMG400031769. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR Proteomes; UP000011115; Unassembled WGS sequence. DR ExpressionAtlas; M1D4H8; baseline. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 747 AA; 81556 MW; 05D4324C39AE9483 CRC64; MMCGLIDLNT VDNDDAGEET AAPVSLDSPA SSSVASGSSD LTSSTTPAVA SVCMELWHAC AGPLISLPKK GSAVVYLPQG HLEHLSEYPP IACNLPPHVF CRVVDVKLQA DAATDEVYAQ VSLVPDNQIE QKWKDGDIDA DTEEEEIEGA GKSITPHMFC KTLTASDTST HGGFSVPRRA AEDCFAPLDY RQQRPSQELV AKDLHGIEWK FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRTGD GELRLGVRRA AQAKTCSSYL ARYSKPLNVS GIEDAVNVIS SRNVFNICYN PRGNSSDFIV PYHKFSKTLA HPFSAGMRFK MRVETEDAAE QRFTGLVVGF SDVDPVRWPG SKWRCLLVRW DDLDVSRHNR VSPWEIEPSG SAPVSSSLVM PSAKRTRVGF PISKADFPIP REGIAVSDFG ESSRFQKVLQ GQEILRMHAP YGGLDARSPR PAGIRCFPGF PSSGISRMGN SIRPLLGDTD KSHESIGFSE SLRFNKVLQG QEIFTSPPYG RAQAGIQMQE KGRTGIFVGI QVPNHGNRWP APNQDNNTRC KPINPVSASS PPSALTFQHP SPPASKFQAM FNHKHGKHDL GNQASLDMSE NCCRYLTSGS HTEDISRKEG TQGMSSFGFL KEQKQTGISY LSLGTQSSFK GNQNLVSTCK TSCRIFGFPL TESKISATRA ETPSEAVYSL GLETTFLPSG DGKLQPGPPL VTNVVGTNFT KVNDLYAARD VLLDIAL // ID M1D8Y1_SOLTU Unreviewed; 212 AA. AC M1D8Y1; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400085188}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085188, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085188} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400085188}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085188} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085188}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400085188; PGSC0003DMT400085188; PGSC0003DMG400034759. DR Gramene; PGSC0003DMT400085188; PGSC0003DMT400085188; PGSC0003DMG400034759. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1D8Y1; -. DR OrthoDB; \N; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 24179 MW; 1BDC015CF054905C CRC64; MEAYNDECKK HYLLINGKRV ISFFKVMIAE TFLEVLFFPP KFARSVPHLT DQEIYLEDSC GRQWMATVCN YNGSLAIRQG WDKFSTEHDL KAGEFLLFHY VPDDRHFIVQ IFGTSGCEKI NFGSNIGKGK QNERTYQETT TPLLDLKEAS QSVSSSPTLF LKLKEEKQGF EAPILHSVCI QGLIIKVCGN SQMDFIHPLG PKRISISKVN FT // ID M1D9V3_SOLTU Unreviewed; 128 AA. AC M1D9V3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400085602}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085602, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085602} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400085602}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085602} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085602}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400085602; PGSC0003DMT400085602; PGSC0003DMG400035173. DR Gramene; PGSC0003DMT400085602; PGSC0003DMT400085602; PGSC0003DMG400035173. DR InParanoid; M1D9V3; -. DR OMA; HELYINC; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 128 AA; 15453 MW; A1D318CBF2C812C1 CRC64; DNVEFLYNEL FRKELTPTDV GRNSRLVIPK KYATTHFPQI QDEELIIYDT SRTLWKFKYR YCKRSRSFLF TRGWLNFVKD KCLRAKDMII FNLCESKNGT KVNNCNTFVI DVVKNIEVLP MDHQRRNY // ID M1DA84_SOLTU Unreviewed; 126 AA. AC M1DA84; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400085771}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085771, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085771} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400085771}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085771} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085771}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400085771; PGSC0003DMT400085771; PGSC0003DMG400035342. DR Gramene; PGSC0003DMT400085771; PGSC0003DMT400085771; PGSC0003DMG400035342. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1DA84; -. DR OrthoDB; \N; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 126 AA; 14682 MW; 142799EF94606065 CRC64; MNEVDLCWNG SSKIQELERF CNRSISHPPH CFPPKFARSV SHLTDREIYL EDSCGRRWMA TVCNYNGSLA IQQGWAKFSA EHDVKVGEFF VFHYVPNDQH FIVQIFRISG CEKINFDSYI CKGKQN // ID M1DAC2_SOLTU Unreviewed; 521 AA. AC M1DAC2; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400085817}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085817, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085817} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400085817}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085817} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085817}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400085817; -. DR EnsemblPlants; PGSC0003DMT400085817; PGSC0003DMT400085817; PGSC0003DMG400035388. DR Gramene; PGSC0003DMT400085817; PGSC0003DMT400085817; PGSC0003DMG400035388. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; M1DAC2; -. DR OMA; ELINCKQ; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 293 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 423 518 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 293 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 423 518 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 521 AA; 59287 MW; 15173BC515BA8E5A CRC64; MAASKHESGE VSKAQPKFYK IIVSPQCTSL RIPEDFANRY CKNLAYLEVP SGKVWEVEVV HFEDQICLDK GWLDFVDYHS ISCGHFSMFG YDGCSHFNVT IFDLSATEIE YPPTKNDSDN SIEIDPENHI GHCSFGHASK RKCRDRVEED DISFGNQNNV IEEKESQEEH EQQSEIVPSK NEAEERGEIA INYQTPKLLE VYPESHRGKT KVSDVVERSV ENIGRSFVQA SKRKRQDGGV EEDDDVSVDI QNNVIEEKES QGENEQQSEV ERDEEMALNY QKAKAFKSNN PFIISIMHPS YVSHSFSLSI PKKFAKRYFL NHRNVVLSVT GKGSWSVKCT IGTKNAKFSW KALVLDNKLK TGDVCVFKVI EGTMPVSINV IIFPAVFNTS KHAEVVSDSE DPCSQYISAD YQRAKAFTSE NPFFIRVMQS SYVSGNSLNI PRVIGWEIFS AKRSDLVLQV PSKRSWTLKC NRAKEYAKLT LGWKEFVFDN NIKVGDVCVF EQVNRSNLLF NVYIFPAEEN V // ID M1DBS4_SOLTU Unreviewed; 265 AA. AC M1DBS4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400086449}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400086449, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400086449} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400086449}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400086449} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400086449}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400086449; PGSC0003DMT400086449; PGSC0003DMG400036020. DR Gramene; PGSC0003DMT400086449; PGSC0003DMT400086449; PGSC0003DMG400036020. DR InParanoid; M1DBS4; -. DR OrthoDB; \N; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 130 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 130 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 265 AA; 29778 MW; 2B52CB5526B3CA97 CRC64; MIFILDFTSI GRKVQTDNSV DISSSAQLRA EIFQTTLSSE FPNFLKCMLP SHVTGGFWLS FPKRFCISHL PKHDANVVLV DEDGDEFSTK YLIGKSGLSG GWRGFSIAHN LKSGLSGGWR GFSIAHNLVE NDVVVFQLIE TCKFKSFPKR FCISHLPKHD ANVVLVDEDG DEFSTKYLIG KCGLSGGWRG FSIAHNLVEN DVVVFQLIET CKFKVYILRE NCLSHIDVAV VLMDFIVEAH NEDPNEKMNM CESNDDKYLE PPKES // ID M1DCJ6_SOLTU Unreviewed; 315 AA. AC M1DCJ6; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400086815}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400086815, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400086815} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400086815}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400086815} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400086815}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400086815; PGSC0003DMT400086815; PGSC0003DMG400036386. DR Gramene; PGSC0003DMT400086815; PGSC0003DMT400086815; PGSC0003DMG400036386. DR eggNOG; ENOG410J303; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; M1DCJ6; -. DR OMA; CKRESAS; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 173 200 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 315 AA; 36939 MW; FFF9A3BB3F4186E2 CRC64; MEKGFFKVFN PKTSAKRMKI PTGYTNYKNE KLPRKVFLRD RYGNMWPIRV TKQGRDIYFK YGWEKFIEDN NMEFADFLII DYDWKGIFDF KLLGINGCVK NGAGGKKKGE EMNVEHEKSV ESKEKTWVSD SSNSSSDYDS DEHYMVEEDV VKEDVEMKQE THKRASCSKR RYVEEEEDEK REGEGEEKEA QEEEDEEENE GAGTYTKKVQ HSKVGCQKSN ACKYIPMDVL RDYKLELPPS MTIRDSACRE FETRVSKWTD GRIWLLGGWR NLGRFNLVEK DDRYICEFVR GKCGKGLYLQ VQVLHEGSSS HLDNK // ID M1DES8_SOLTU Unreviewed; 283 AA. AC M1DES8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400087896}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400087896, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400087896} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400087896}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400087896} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400087896}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400087896; PGSC0003DMT400087896; PGSC0003DMG400037467. DR Gramene; PGSC0003DMT400087896; PGSC0003DMT400087896; PGSC0003DMG400037467. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32396 MW; 2277DED3680B740F CRC64; MEDEEVDENN SQVVVIDKYS SHSVSIPNKF AQQHLPPLAS GKSMILEFED FGGNKFMMEV VHSNYGDYYY LRTGWDRFQN QHKLESGDFI YFSKKNDSYL IYSCKTPKPE ELDLQLPNES IERVQVLVKN LCAKDPKCLR LSKKEVEGNL DQNLILQVGE EIILPLHDPI QKKSFTVQLL HADQEEYHIR GREWEEYVAQ HNLFIFDETT IFVNKVILDP TAEVQLVNIS YHYEITYQTR ATNQPQKKPK LLGTTAETSS APASTAVDNS SAPASTTVDN KNS // ID M1DEX7_SOLTU Unreviewed; 250 AA. AC M1DEX7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400087958}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400087958, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400087958} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400087958}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400087958} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400087958}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400087958; PGSC0003DMT400087958; PGSC0003DMG400037529. DR Gramene; PGSC0003DMT400087958; PGSC0003DMT400087958; PGSC0003DMG400037529. DR InParanoid; M1DEX7; -. DR OrthoDB; EOG09360TDR; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 52 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 52 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 123 150 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 250 AA; 29451 MW; AB22733BC776DBD0 CRC64; MWPIGVTKSG KHIYLENGWE KFIEDNIVEL GDFFIFYYDG IRTFDFKLLR RNGCVKKGVG GSKLVVKEEE TDEMNVEHQK SVDPKENTWA RDNKSIFSNE DRDGANMVED KEDEEKECEK TKKVQSKDED KEEEDDKDDE EDEYKEEDKE EKERIGIFNK KAPRSKEYQL ELPSNMTIRD SSGKEFEAKL KIWKDGRIWL VGGWRSLCRL NLLEKNDTCI CEFVRAKHNK GLYLQVYVFH EGEGSHPNKK // ID M1DFK8_SOLTU Unreviewed; 282 AA. AC M1DFK8; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400088263}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400088263, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400088263} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400088263}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400088263} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400088263}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400088263; PGSC0003DMT400088263; PGSC0003DMG400037834. DR Gramene; PGSC0003DMT400088263; PGSC0003DMT400088263; PGSC0003DMG400037834. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR OrthoDB; \N; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 147 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 282 AA; 32013 MW; 9B55B23584EB9B7C CRC64; MGSTIAANQI QTERIRKIRR DGHVPKKPTS TPLHIGSSET DSDDIIRAVF KRKKEAEVER VRAKGDRKSV KKAPVKKESV IKRATVKSKP VNGPGPSVQK LMEEEALTKE ECIAEMEKQK VLNGGVFDPE ILTEFGTRSS ADLLVQVYVL YSRKAIASEF GECFPPKFAR SVSHLIDREV YLEDSCGRRW MTTVCNYNGS FAIRQGWDKF SAEHDLKVGE FLLFHYVPDD RHFIVQIFGT SGCEKINFSS DIGKGKQYER TYQEITTKEE SQSGKLFVHK IF // ID M1DKF3_SOLTU Unreviewed; 132 AA. AC M1DKF3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 12-APR-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400090454}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400090454, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400090454} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400090454}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400090454} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400090454}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400090454; PGSC0003DMT400090454; PGSC0003DMG400040025. DR Gramene; PGSC0003DMT400090454; PGSC0003DMT400090454; PGSC0003DMG400040025. DR InParanoid; M1DKF3; -. DR OrthoDB; \N; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 132 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 132 AA; 14412 MW; 7DB6680C8C0F2BE1 CRC64; MKSRARSPSK VENGDNKKVQ MCIGRKGQTN NSVDISSSAQ LRAEIFQTTL PSEFPHFLKC MLPSHVTGGF CLSFPKRFCV SHLPKHDANV VLVDEDGDEF STKYLIGKNG LSGGGRGFSI AHNLVENGVL VF // ID M1DKU4_SOLTU Unreviewed; 110 AA. AC M1DKU4; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400090637}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400090637, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400090637} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400090637}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400090637} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400090637}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400090637; PGSC0003DMT400090637; PGSC0003DMG400040208. DR Gramene; PGSC0003DMT400090637; PGSC0003DMT400090637; PGSC0003DMG400040208. DR InParanoid; M1DKU4; -. DR OMA; ENHIEMA; -. DR OrthoDB; EOG09360WNZ; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12837 MW; 071981BC6699437E CRC64; MSNFGANPND ELSFYKIVLD PQMEELRIPS SLVKRIKEEA MGEVLLLKGR GGDKCWNIKI REDGNAMFFH GGWKEFVLEN HIEMAELLFF NYDGMNTFTV RIFNKNGWEK // ID M1DLV3_SOLTU Unreviewed; 299 AA. AC M1DLV3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400091092}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400091092, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400091092} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400091092}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400091092} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400091092}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400091092; PGSC0003DMT400091092; PGSC0003DMG400040663. DR Gramene; PGSC0003DMT400091092; PGSC0003DMT400091092; PGSC0003DMG400040663. DR InParanoid; M1DLV3; -. DR OMA; IVIKKTH; -. DR OrthoDB; EOG093616YP; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 65 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 65 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 34957 MW; A063DC566E711EDB CRC64; MLNPVFLQAP YGKAWEVEVE HSQGQIWLVK GWKEFSDYYA ISIRQFLIFG YNARDHFDVT IFDMSTTEIE YPIEDIESDD SMDMLDHFAE NLSHGPLVEK RRRKRQEGEE EDDSRVNLQT NANVIEEEEE DIPINLQTNA NALEEEESQE ISEGCEEHEQ KPKIGTDQEV GEANHRSEEI GSKNNSRYSV VNLTGDTPYF EIVIKKTHTT YMTIPMRFAK RTNIVNMKNM RLVNEEGIEW GVEIEYTERR AIIKRGWTEF RKDNKIASGE TIRFKLIQGR VANVLQVQKI PTPHSLRYY // ID M1DMA0_SOLTU Unreviewed; 170 AA. AC M1DMA0; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400091293}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400091293, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400091293} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400091293}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400091293} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400091293}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400091293; PGSC0003DMT400091293; PGSC0003DMG400040864. DR Gramene; PGSC0003DMT400091293; PGSC0003DMT400091293; PGSC0003DMG400040864. DR InParanoid; M1DMA0; -. DR OMA; HDANIVL; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 170 AA; 19117 MW; 660C6545A2708FF9 CRC64; MCIGRKGQTD NSVDISSSAQ VRAEIFETTL PAEFPHFLKC MLPSHVTGGF CLSFPKRFCV SHLPKHDANI VLVDEDGDEF STKYLIGKSG LSGGWRGFSI AHNLVENDVL VFQLIETCKF KVHILRENCL SPIDVAVVLM DFIVEAHNED QNEKMNMCEA NEDKYLEPHE // ID M1DPJ9_SOLTU Unreviewed; 133 AA. AC M1DPJ9; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400092316}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400092316, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400092316} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400092316}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400092316} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400092316}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400092316; PGSC0003DMT400092316; PGSC0003DMG400041887. DR Gramene; PGSC0003DMT400092316; PGSC0003DMT400092316; PGSC0003DMG400041887. DR InParanoid; M1DPJ9; -. DR OMA; SHIQHNE; -. DR OrthoDB; EOG093619BR; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 133 AA; 15492 MW; D4D87C6F70332F1C CRC64; MFVIPRRYAI KYFSHIQHNE EIEFYDSSRN SWKFRFFYCQ SSKKFSFTKG WHKFVRAKSL SARDTIVFNL YEFKNGTNES CNTFVIDVVK NVEGLPMDLA LNPDAVDVDV ALTPVLLFGK QIGWTKTKSG NEV // ID M1DR54_SOLTU Unreviewed; 142 AA. AC M1DR54; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400093051}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400093051, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400093051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400093051}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400093051} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400093051}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 4113.PGSC0003DMT400093051; -. DR EnsemblPlants; PGSC0003DMT400093051; PGSC0003DMT400093051; PGSC0003DMG400042622. DR Gramene; PGSC0003DMT400093051; PGSC0003DMT400093051; PGSC0003DMG400042622. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; M1DR54; -. DR OMA; NDEYWPL; -. DR OrthoDB; EOG09360Z5S; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 142 AA; 15904 MW; 70BA387C1923973B CRC64; MMESIGSSEI DNDEYWPLSG KPYVDIILTK SAVKPTYSLY LPKKMNKELP SAGVPVVLTC GRKKWNLYYG GARSTYKFIS TGWRKFVDGN NLKEGDGLVF ELSECSTSKI EFRVQILRGD FPAELIPEDV EGTKSENPII LG // ID M1DSP3_SOLTU Unreviewed; 242 AA. AC M1DSP3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400093782}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400093782, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400093782} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400093782}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400093782} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400093782}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400093782; PGSC0003DMT400093782; PGSC0003DMG400043353. DR Gramene; PGSC0003DMT400093782; PGSC0003DMT400093782; PGSC0003DMG400043353. DR InParanoid; M1DSP3; -. DR OMA; FICEGDW; -. DR OrthoDB; EOG093616E9; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 242 AA; 27967 MW; B3E3CB07AA24865A CRC64; MPPIFIKVNK KILSKTCLLK TNVVGMSWET KIVREKSNYF ICEGDWPQFV VHHKLELGDI LIFFLIDKST FHILPYTQKC FKNSCGRGVF QELSSSSEEE HDVGIARKLK KMKMEQKESS EEEEAEGGNE ENAPKTSRFS VINIKNKDPY FEMVTIPKSF AIWTGITKMK KMRLVNGEGN EWKLVDIVHT RQRVYMKRGW AEFRTLNKIA NGQTCRFKLI KGNGCGNNVL QVQKIPKPKC LK // ID M1DTI7_SOLTU Unreviewed; 391 AA. AC M1DTI7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400094151}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400094151, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400094151} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400094151}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400094151} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400094151}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400094151; PGSC0003DMT400094151; PGSC0003DMG400043722. DR Gramene; PGSC0003DMT400094151; PGSC0003DMT400094151; PGSC0003DMG400043722. DR InParanoid; M1DTI7; -. DR OMA; KEDTATH; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 126 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 249 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 126 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 45931 MW; 311FC44248D47B97 CRC64; MEIPPKKPHF FKPILPGFKN GLKIPIGFLK YLKGHDQHEH AILTRGGKKW LVKANGWRLE EGSWKEFVEE LNLKLGDVLV FKHEGDMKFD VSIFDSSHHC DKEYAKYEDE DEDENVTHDK HLNQSYFECT IRQYCLSKGF LWIPKHFAVA NGFIKGNKKY GLIIIDETQT KLWNLMLKSC NTKVYVADGW GKFSADNCLK EGDRIMFEVV TNGETPIWRS RVTSNAETPI SKGFSNKEAA KDMDLSDSHF ICTIRPYCLS KHFLYLPMDF VKSNGLMRRR EMILINEKRR SWSVWLGKTG HHFAIKRGWT QFRNANGIQV GDTYNFELIN NGKIPIVHFH CEYFFYDLII LCMCYTTQCQ NLRLCFVLKI CRQIFWELRM PSQFTRKLNV F // ID M1DU69_SOLTU Unreviewed; 172 AA. AC M1DU69; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400094457}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400094457, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400094457} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400094457}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400094457} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400094457}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400094457; PGSC0003DMT400094457; PGSC0003DMG400044028. DR Gramene; PGSC0003DMT400094457; PGSC0003DMT400094457; PGSC0003DMG400044028. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1DU69; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 172 AA; 19895 MW; 70E727B6C21BAC2F CRC64; MEECKKDRLL TNGKKVVSFF KVMIAETFLE VLFFPPKFAR SVPHLTDREI YLEDSRGRRW MATMCNYNGS LAIRQGWDNF SAEHDLKVGE FLLFHYVPDD CHFIVQIFGT SGCEKINFDS DIGKGKQNER TYQETTTPLL DPKEAFQSGA LVVFYVMSHL GYTLDRDTNV LE // ID M1DWD5_SOLTU Unreviewed; 274 AA. AC M1DWD5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400095470}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400095470, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400095470} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400095470}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400095470} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400095470}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400095470; PGSC0003DMT400095470; PGSC0003DMG400045041. DR Gramene; PGSC0003DMT400095470; PGSC0003DMT400095470; PGSC0003DMG400045041. DR InParanoid; M1DWD5; -. DR OMA; FVVHHQL; -. DR OrthoDB; \N; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 62 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 62 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 31701 MW; 6E96A74538DEBC5F CRC64; MLSKTCLLKT SEAKIVREKP NYFICERDWP QFVVHHQLEA SDILIFSLIE KSTFHVQPYT PKSCRNITHE RQHFYEELSS SSSEEEIGPS KRAKKMEPII VVSDTEEESV DMSSSDDDDP PYSHRATYYK NPKREKVSSD QKDEEAHSGS EAYGLKRNSR CSLVTFNSHD DYYEIVVKKS HTTFMTIPMG FAKRTGIINM KKMRLINDKG KKEWEVEIVH TGPRVIIKNG WAEFRTHNKI ANGETCRFKL IQGHATASVL QVQNVPRPHS LQYF // ID M1DWG3_SOLTU Unreviewed; 187 AA. AC M1DWG3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400095506}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400095506, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400095506} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400095506}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400095506} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400095506}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400095506; PGSC0003DMT400095506; PGSC0003DMG400045077. DR Gramene; PGSC0003DMT400095506; PGSC0003DMT400095506; PGSC0003DMG400045077. DR InParanoid; M1DWG3; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 187 AA; 21177 MW; FFE1C2459A093BD3 CRC64; MCIGRKGQTD NSVDISSSAQ LRAEIFQTTL PSEFPHFLKC MLPSHVTGGF CLSFPKRFCV SPLPKYDANV VLVDEDGDEF STKYLIGKNG LSGGWRGFSI AHNLVENDVL VFQLIESCKF KVHILRENCL SQIDVVVVLM NLIVESHNED QNKKMNMCEA NEDKYLEPHE ERKLSLSCMK ERKMNGD // ID M1DXS3_SOLTU Unreviewed; 336 AA. AC M1DXS3; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400096132}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400096132, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400096132} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400096132}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400096132} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400096132}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400096132; PGSC0003DMT400096132; PGSC0003DMG400045703. DR Gramene; PGSC0003DMT400096132; PGSC0003DMT400096132; PGSC0003DMG400045703. DR eggNOG; ENOG410J303; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR InParanoid; M1DXS3; -. DR OMA; HFPEFIN; -. DR OrthoDB; EOG09360V85; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 173 200 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 336 AA; 39214 MW; BE2B6BDE4B60F19C CRC64; MEKGFFKVFN PEISAKRMKI PTGYTNYKNE KLPRKVSLRD RYGNMWPIRV TKQGRDIYFK YGWEKFIEDN NMEFADFLIF DYDGKGTFDF KLLGINGCVK NGAGGKKKGE EMNVEHEKSV ESKEKTWVSD SSNSFFDYDS DEHYIVEEEV VKEDVEMKQE THKRASCSKR RYVEEEEDEK REGEGEEKEA QEEEDEEENE GAGTYTKKYI PMDVLRDYKL ELPPSMTIRD SAGREFETRV TKWTDGRIWL LGGWRNLARF NLVEKDDRHH PRTVDGLTVR PADQVTDRSS CPWIDAPKAQ LQSQLTVDQH GPSFDPRSVL DLQFSSISGE SSFFED // ID M1DYF5_SOLTU Unreviewed; 168 AA. AC M1DYF5; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400096437}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400096437, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400096437} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400096437}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400096437} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400096437}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400096437; PGSC0003DMT400096437; PGSC0003DMG400046008. DR Gramene; PGSC0003DMT400096437; PGSC0003DMT400096437; PGSC0003DMG400046008. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1DYF5; -. DR OrthoDB; \N; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 19563 MW; 2024466CD02FAEE0 CRC64; MEAYYDEYKK DDLLINGKKV ISFFKVMIVE TFLQVLCFPS KFARLVPYLT DQEICLEDSC GRRWMTTMCN YNGSLAIRQG WAKFSAEHDL KVGEFLLFHY VPDDRHFIVQ IFGTSGCEKI KFNSDIGKGK PNERTYQEIT TKEESQSGKL SVHNNFLGLF CFRCVVLY // ID M1DZJ7_SOLTU Unreviewed; 184 AA. AC M1DZJ7; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400096938}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400096938, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400096938} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400096938}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400096938} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400096938}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400096938; PGSC0003DMT400096938; PGSC0003DMG400046509. DR Gramene; PGSC0003DMT400096938; PGSC0003DMT400096938; PGSC0003DMG400046509. DR InParanoid; M1DZJ7; -. DR OMA; PRVNIKS; -. DR OrthoDB; EOG09361ANX; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 184 AA; 21368 MW; 3A9C9DF0E8F8E019 CRC64; MQRIPEEFAR RCCKNMLNPV YLEVPSGQVW EVEVQHSEGQ IWLAKGWEDF CDYYSISCGH FLMFGYNAHS CFDVTIFDLS ATEIEYPYSL RTFHCHETHH VLKSDLSESD DYVYILEDIP RSQKLNEKVP DMVDHSVENL GDGQSSKRKR DEEDVASPSF TRKGQCEDLI GYDLNSMSIL LHNN // ID M1E058_SOLTU Unreviewed; 168 AA. AC M1E058; DT 03-APR-2013, integrated into UniProtKB/TrEMBL. DT 03-APR-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400097223}; OS Solanum tuberosum (Potato). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum. OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400097223, ECO:0000313|Proteomes:UP000011115}; RN [1] {ECO:0000313|EnsemblPlants:PGSC0003DMT400097223} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. DM1-3 516 R44 RC {ECO:0000313|EnsemblPlants:PGSC0003DMT400097223}; RX PubMed=21743474; DOI=10.1038/nature10158; RG The Potato Genome Sequencing Consortium; RT "Genome sequence and analysis of the tuber crop potato."; RL Nature 475:189-195(2011). RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400097223} RP IDENTIFICATION. RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400097223}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; PGSC0003DMT400097223; PGSC0003DMT400097223; PGSC0003DMG400046794. DR Gramene; PGSC0003DMT400097223; PGSC0003DMT400097223; PGSC0003DMG400046794. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; M1E058; -. DR OMA; QVLCFPP; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000011115; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011115}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011115}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 19493 MW; C1E1D2C1F2126C69 CRC64; MEAYYDECKK DGLLINGKKV ISFFKVMIVE TFLQVLCFPP KFARLVPHLT DQEIYLEDSC GRRWMATMCN YNGSFAIRQG WAKFSAEHDL KVGEFLLFHY VPDDRHFIVQ IFGTSGCEKI KFNSDIGKGK PNERTYQEIT TKEESQSGKL SVHNNFLGLF CFRCVVLY // ID M4C8A6_BRARP Unreviewed; 310 AA. AC M4C8A6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra000434.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra000434.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra000434.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000434.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra000434.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000434.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra000434.1; Bra000434.1-P; Bra000434. DR Gramene; Bra000434.1; Bra000434.1-P; Bra000434. DR InParanoid; M4C8A6; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 34825 MW; 09B53FE81D48393B CRC64; MMTNLSLARE GEEEEEEAGA KKPTEEVERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDSSTNEKGL ILNFEDLTGK SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFLR CVGDTGRDSR LFIDWRRRPK VPDYTTSTSH FPAGAMFPRF YSFQTATTST SYNPYNHQQP RHHHSGYCYP QIPREFGYGY VVRSVDQRAV VADPLVIESV PVMMHGGARV NQAAVGTAGK RLRLFGVDME CGESGGTNST EEESSSSGGS LPRGGASPSS SMFQLRLGNS SEDDHLFKKG KSSLPFNLDQ // ID M4C8L7_BRARP Unreviewed; 459 AA. AC M4C8L7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra000545.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra000545.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra000545.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000545.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra000545.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000545.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra000545.1; Bra000545.1-P; Bra000545. DR Gramene; Bra000545.1; Bra000545.1-P; Bra000545. DR InParanoid; M4C8L7; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 337 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 337 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 459 AA; 50910 MW; E76F22FADE5B4F04 CRC64; MTIVHVAEAK AACATAIACP IPVLEASTRN KPGEEGISPT QRCSLVQDPL PVTHTPTTRI RQTWVSYISR KKHPITTEEV DDGQDNTGNK KVKKNNSQAE ADSSSSDNSC FVAPVTASNL EEDSLCLPPD FTISNGFKRK CRKIVLTDER ERSWALDLRF NKSSDTFCIT RGWRNFCEEN GRKEGSLFKF KLMRNGETPL LSVCPTESIS DGTQGGDENI PQICRDSTLP NPNRFVTLTL TNDSLKSSRL YLPLPFLKEN GMDKPGMVTL LGKDGTRMLA NLLRENSGRM SLGKGLKGFA RANGLNMGES FTLELIWENA TPVLSLLSTE FRSQNRFVTL TLTQDSFKNS RLGLPLPFMR ENGMNEPGTI ALLGKDGTKW MTNLLRESQG RMSLGKGWKD FARGNGLEIG ESFTLESIWE DATPMLSLSS RESKRETVHV SAEPTIGNET KKDENNIEE // ID M4C8N5_BRARP Unreviewed; 960 AA. AC M4C8N5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra000563.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra000563.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra000563.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000563.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra000563.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000563.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PRIDE; M4C8N5; -. DR EnsemblPlants; Bra000563.1; Bra000563.1-P; Bra000563. DR Gramene; Bra000563.1; Bra000563.1-P; Bra000563. DR InParanoid; M4C8N5; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 282 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 561 656 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 720 815 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 857 952 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 282 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 561 656 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 720 815 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 857 952 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 960 AA; 107676 MW; 1F118C8EE128A2B2 CRC64; MMFQVSDVGH RDVETPSSNN GQDNIGSMNK KHPYARQEAG FSSNHGDNQD NDELPRKRNY SEAEKGSSSK HSCIVADATT ASSLHTYTPV FLTQDFTSLG GLKGKCDKKC SPKRIISSMG TRFVTFTLAP VDVRHCRLRL PMQFSRENGI NKPGKIYLLG NDGSKWLANL LQESRGRMTV GDGWKSFVKA NGLKIGESYT LELNWEDTTP VLSLCPTDHH SIGIRAEGEC SEASGNESLP IRPSSGTEVI KYDNRKDESS SWEREKNHLR SRDSSSASQN RFLTLTITPD SLRHGRLRLP LEFMTENSMN RPGDITLLGK DGAKWLASLL LERRGRMCLG KGWKDFAKAN GLKTGDSITL ESIWEDSTPV LRLLHIESSD DRRQQGECSK ARDKESAFTE PSSGNKTRKL ESNREESRIY PLTRLDSSLV NQNRFEISTL SPEIVRHGAH DYQIGEIVVF RDERDMMFQV SDLGPRFSVI QNVLAPSSNS DQENIELPRK KKAKKNNPGT EAYSSPERSC FVAHVTASNL HTDAPHLPQD FTSSNSPTQI VSSYLSSEKQ VATFTLAPVD VRNCRLRLPM QFTRENGINK PGKIYLLGKD GSKWLANLLL ESRGRMTLGD GWKSFVKANG LKTGESFTLK LNWEDTTPVL SLCPPEYSID SREGGECSET IEKEPLPIVL SCGKEINKED ENRKRESRSW ERETNLLIWR DSTVLSQNRC LTLTITPDSL KHGRLRLPLE FMTDNSMNKP GEITLLGKDG VKWLVSLLLE KRGRMSLGKG WKDFAKANGL KTGDSITLES IWENATPVLS LLRVESSNDS EVSKQSGNKT RKEENRSSSW ELEKRRSSSS SEIQNRTVIL TLTPEGVRDC KLQLPSQFMR SNGIMNPGKI TLLGRSGMKW FAYLLSKDGT IALENGWKGF CEANGVMVGE SFVLELIPTQ DADHVFKFYS NYGYHIHNKC // ID M4C8N6_BRARP Unreviewed; 1015 AA. AC M4C8N6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra000564.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra000564.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra000564.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000564.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra000564.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra000564.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra000564.1; Bra000564.1-P; Bra000564. DR Gramene; Bra000564.1; Bra000564.1-P; Bra000564. DR InParanoid; M4C8N6; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 332 428 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 491 584 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 646 741 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 332 428 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 491 584 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 646 741 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 440 471 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1015 AA; 115883 MW; 952BAEB8F2DB248F CRC64; MAKSTTLLSP QFFHTLLPGF QTHLTIPSDF FSNYIKDLET TTAELKSDSS LDITWKVKLT GRILNDGWGD FAVANNLHIG NVVLVRYEGG IVFHVSDLGP CFSQIQHINP PRQNIDEEDD VERERKGDES LIKKKLKPKQ RPVSYSSYSP CHKRFVTFTL PPEYATLCRL TLPNLFVKEN GISKPAEIRV LGKDGTKWPI TLLLDKKGIM SFGKGWKEFV KANGLETGFT LKLMWEDTTP SFSLCCPESA SDRDEKECLE SIKKQSLSID RRIRDKPGKD DNNKEEKRSW ERQKIHLRGR DVGDFEEVPI NKKVKTDSHG TEAAFSSLDN SCFVAFVTDS SLDSDTLYLP RYFTSSNGLT RKCRKIVLID GGGRSWAMDL SFNESSDIFY ISPGWRSFCD KNGLQAGGFF TFKLVGNEET PVLSFCPMES IDSRSQKDCF EAHSTEVSNE EEEIERERNE EETLMDIEEK KSKPEQRPVS YSSYSPCYKR FITFTLPPDY ATLDKLTLPK LFVKENGFNK PGEIYLLGKD GTKWLTRLLL DKKGLMRLGK GWKDFVKANG LESGFTLKLI WEDATPSFSL CCAESTSDKN EEEYLETIMK QSLSIDRRIR DKISKDENDK EEKRSWEREK INMRGRDSTT SRQKQFLTLA ITPTSLRCNR MRLPIPFLRK SCMDKPGVIY LLGKDDTKWM ANLIQEGDGR MKLGKGWTAF AKENEFKAGE SVTLESIWED ETPMIRFLRT ESESSKANKK ESIYMEDTES RTRDSSTEIH ARFVTLTLKH EDVKACMLIL PSQFLKANGI NKLGKITLLD ENEVELSAYL LSREGIVAVE SGWESQSQKK RSTSLSCVLS LSNSTQTYKK TVTTSLPQSS STKMVQSAME KHTLSMPDWS LLPEELLHMI SEMLVRIRLS LSFLPITPRE SEDNMALPYR FQCSVKVELL FIVLNFQNLP KSFVRANGLE TRCGDIVLMN EKVPMDSRLE ISSLSNSSKE EEHCFYVSLP PTENPKKMRA QKLKK // ID M4CB08_BRARP Unreviewed; 270 AA. AC M4CB08; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra001387.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra001387.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra001387.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001387.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra001387.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001387.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra001387.1; Bra001387.1-P; Bra001387. DR Gramene; Bra001387.1; Bra001387.1-P; Bra001387. DR InParanoid; M4CB08; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 43 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 63 160 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 43 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 63 160 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 30875 MW; B3F08DE819677B4F CRC64; MDGRRLTQGW QKFAASHDLR VGDIVIFRHD GDFLLHVSFF GPSCCEIRYN HDDDDDDDDD DSSFVACVTA SNLSTDMVHL PMDFSRYNGL TNRNCEIILL NEESKQWRLL MRHHKASGHV CIRSGWKRFC YENRRRANDF LTFKLVRNGA TPVLQLCSSS SSSTTRPCRF VILTLTPYSL KSSTLCLPVP FVMANGIKNV REIILVDRHG VRRTTSLKPD DKYGRMRLGE GCIKFCIASG VKTGESFRLE LIKEKEEDTV NHLLKFSSKI // ID M4CB32_BRARP Unreviewed; 236 AA. AC M4CB32; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra001411.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra001411.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra001411.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001411.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra001411.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001411.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra001411.1; Bra001411.1-P; Bra001411. DR Gramene; Bra001411.1; Bra001411.1-P; Bra001411. DR InParanoid; M4CB32; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 26840 MW; 3D281441203D27F6 CRC64; MLGNHYSRDI HHNTLSLHPH QNDTASHKES LFEKSLTPSD VGKLNRLVIP KQHAEKYLPL NNGGGEVTSE TTEKGMLLSF EDESGKCWKF RYSYWNSSQS YVLTKGWSKY VKDKHLDAGD VVFFQRHRFD FHRLFIGWRR RGEASSLSAV SQEARVNTTA YWSGLTTPYR QVEASTSSYP NIHQEYSQYG AVAETPTVVA GTSRTVRLFG VNLECHGDVV EPPPCSDGYN GQHIYY // ID M4CBR7_BRARP Unreviewed; 287 AA. AC M4CBR7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra001647.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra001647.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra001647.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001647.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra001647.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001647.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra001647.1-P; -. DR EnsemblPlants; Bra001647.1; Bra001647.1-P; Bra001647. DR Gramene; Bra001647.1; Bra001647.1-P; Bra001647. DR InParanoid; M4CBR7; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 185 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 185 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 33183 MW; E8FD78251733271B CRC64; MEWNRGFGRV KEERKSLSFF KIFHSADLSS ESMRGIPYDF MKNVSKEDFS RKMVIRTKWG RSWEVDISMN PRFYYMEKSG WNQFVTDNAL GANEFVTFTH NGLMCFNVNI YKESGKEIVL THTTTPFSGI KNEEGERSYK DVKKEDESMG GGVGHVEIGE SSRGAALRKK KAEKHKKRKK VKYGVPRFKI TITKSYLRSL PIPTFFEKRY LKSESKVYKI HHSEGDGSWE VLSLVHQAHI VLSRGWVKLA REYPLAIGDR CTFHLVKPTE FVLTSKKAKA IEITISD // ID M4CBR8_BRARP Unreviewed; 299 AA. AC M4CBR8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra001648.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra001648.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra001648.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001648.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra001648.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001648.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra001648.1-P; -. DR EnsemblPlants; Bra001648.1; Bra001648.1-P; Bra001648. DR Gramene; Bra001648.1; Bra001648.1-P; Bra001648. DR InParanoid; M4CBR8; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 34780 MW; CFF9471C87C8B3CA CRC64; MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT PRKPHTTTPF SGIKKEEDVK KEDESMGVEV EIEVEKKKRA VEVGESSRGA ALKKKKAEKP KPSKKKKKMK RNKVKNGVPE FKITITNSYL KFLAIPKKFE EAYIPDESKV YMIHHSEGKG SWEVLCLVRE TRTIFSSGWC RLAREYPLAA GDRCTFHLVK PDEFVLTTKK AREEITVIE // ID M4CBW0_BRARP Unreviewed; 187 AA. AC M4CBW0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra001690.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra001690.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra001690.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001690.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra001690.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001690.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra001690.1; Bra001690.1-P; Bra001690. DR Gramene; Bra001690.1; Bra001690.1-P; Bra001690. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 187 AA; 21872 MW; A7984005A9C024C9 CRC64; MLPERKMQEC LNKSSFSKSL SPGQNWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW QLWLRPDKKG LFMIKEDWDE FVNDNFLGPD DTLVFTHQDT MYFQHVGHPV IRQYGLEFGP HDSSMYFILP DGNKVDGLTK YYNGLPNFLG WADVCQQYNL KIGDTVVCEF ELSGRVVAAV RVHFVNE // ID M4CBZ9_BRARP Unreviewed; 577 AA. AC M4CBZ9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra001729.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra001729.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra001729.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001729.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra001729.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra001729.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the iron/ascorbate-dependent oxidoreductase CC family. {ECO:0000256|SAAS:SAAS00631094}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra001729.1-P; -. DR EnsemblPlants; Bra001729.1; Bra001729.1-P; Bra001729. DR Gramene; Bra001729.1; Bra001729.1-P; Bra001729. DR InParanoid; M4CBZ9; -. DR OrthoDB; EOG09360G7B; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 2.60.120.330; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR026992; DIOX_N. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR027443; IPNS-like. DR InterPro; IPR005123; Oxoglu/Fe-dep_dioxygenase. DR Pfam; PF03171; 2OG-FeII_Oxy; 1. DR Pfam; PF02362; B3; 2. DR Pfam; PF14226; DIOX_N; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS51471; FE2OG_OXY; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Iron {ECO:0000256|SAAS:SAAS00631088}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Oxidoreductase {ECO:0000256|SAAS:SAAS00631086}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 198 336 Fe2OG dioxygenase. FT {ECO:0000259|PROSITE:PS51471}. FT DOMAIN 270 348 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 480 574 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 270 348 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 480 574 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 577 AA; 66079 MW; 01A4A571EA081B22 CRC64; MGVLDEAFIQ APEHRPKTHL KHSDDHILSK EIPTIDLSSL QDPNCDKTAL ATEIAEACMR WGFFQVINHG LSLDLMRRVE KTVAEFFSLT LEEKRRVKRD EVNPMGYHDG EHTKNVRDWK EIFDFFLQDS TTVPATTEPE DTELRKLTNP WPQNPSDFRE VCQEYAREVE KLAFKLLELI SISLGLPGDR LTGYFKDQTS FLRFNHYPPC PNPELALGVG RHADAGVITV LAQDSVGGLQ VSRRSDGQWF SVKPNPDAFI INIGNCMQRV PDKFVSRFKD ELSVAVALTV PDGHVWRVGL RKADNNNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVCIYNLPQS EINYHSTGLM DSASHNNHFK RPRLFEDLED EDAETLHTTA SAIQSFFTGP VKPEEATPTQ TSKVPKKRGR KKKNADHPEE VNSSAPRDDD PESRSKFYES ASARKRTVNA EERERAVNAA KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA GRAKFSQGWY EFTVENNLGE GDVCVFELLR TRDFVLKVTA YRVNEYV // ID M4CD51_BRARP Unreviewed; 314 AA. AC M4CD51; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra002132.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra002132.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra002132.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002132.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra002132.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002132.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra002132.1; Bra002132.1-P; Bra002132. DR Gramene; Bra002132.1; Bra002132.1-P; Bra002132. DR InParanoid; M4CD51; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000011750; Chromosome A10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 222 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 222 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 36125 MW; 69E928212C0087E6 CRC64; MATNSCIGML MDESDNPGFF KVLRKEDLSS QTMILFLLYV QKREIPQDFL KSISAKEFSF KMVLKLPWGS SWRINLSKYQ SFFYYMEKDG WDQFLSDNGL GADELLTFTH KGNMCFNVSI YQINCLEMLR PNRSATIASS SSRNKREEVS NGKEEERESL SASNYPVSET AESTVGGRLK QKRQLINLGK KQVKKAEKAN KCKKRKMDTE SDDSEDGTSS LAPEFTLTIK KSYVLFLGVP KRFGEMHMPK EETVFKIHDR KGKKSWEVTY VVSKIQSRFS RGWPRLVKDF GLEIGDFCTF ELIKPTEMIL TVSK // ID M4CDP6_BRARP Unreviewed; 1439 AA. AC M4CDP6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra002327.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra002327.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002327.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra002327.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002327.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra002327.1-P; -. DR EnsemblPlants; Bra002327.1; Bra002327.1-P; Bra002327. DR Gramene; Bra002327.1; Bra002327.1-P; Bra002327. DR InParanoid; M4CDP6; -. DR Proteomes; UP000011750; Chromosome A10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 2. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1312 1405 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1439 AA; 158541 MW; 5D00FE79C1F14B68 CRC64; MKAPSSNGVS PNPMEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMTLQ PVNKYDRDAL LASDMGLKIN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIFRGQPKRH LLTTGWSVFV STKRLFAGDS VLFVRDGKGQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDGTDMESA LKRAMPWLDN GLEMKDPSST IFPGLSLVQW MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDQSK LVSFQTPPGG ISSSNLQFNK PNLQGAMSQL PQPPTTLSQQ QQLQQLLHSY LNHQQSQPQQ HKGQLLLGIR RANRQQPALS SSVISSDSMH IGVLAAAAHA NANNSPFTIF YNPRAAPAEF VVPLAKYTKA MYAQVSLGMR FRMIFETEEC GVRRYMGTVT GISDLDPVRW KNSQWRNLQI GWDESAAGDR PSRVSVWDIE PVLTPFYICP PPFFRPRFAG QPGMPDDGTD MESALKRAMP WLDNGLEMKD PSSTIFPGLS LVQWMSMQQQ NGGQVPSSAG FFPSMVSPTA AMHNSLGGAD DQSKLVSFQT PPGGISSSNL QFNKPNLQGA MSQLPQPPTT LSQQQQLQQL LHSSLNHQQS QPQQQPQSHQ QQQQQPQSLH QQQQQQSLLL QQQQQQQQSL QQHHQQQLQQ HHQQPLQQQT QQQQLQQQQQ QLRAQQLQSH THPQPQQSPP HPQPQSHPQQ LQPHKLQQFQ LPQNQLYNGQ PAVQQHQSQQ ASMHHLQSQV VSGSIASSVI APPSSSLNQS FQQQQQQSTQ LQHTHRHIGA STSQSSVIET SKSSSNLMSI PPQDTQFSRQ MEQQQPPGSS SLPSQLLHQQ LQSQQFPQLP SPSQVQQFPS SCTNTGLPSL QPPQTLVSRP QDKQNPPVGG GAKAYSGITD GGDAPSSSTS PSTNNCQISS STFLNRSQSG PAILIPDPAV DVSGSLVQDL YSKSDMRLKH ELVSQQKPKA SLTDHQLEAS ASGTSYGLDG GENNRQQNFL SPNFGLDGDS RNSLFGGAAN VENGFVPDTL LSRGYDSQKD LQNMLSNYGG VPNVIGTEMS TSAVRTQSFG IPNVPAISND IAVNDAGVLG GGLWPTQTQR MRTYTKVQKR GSVGRSIDVN RYRGYDELRH DLARMFGIEG QLEDPLTSDW KLVYVDHEND ILLVGDDPWE EFVNCVQSIK ILSSAEVQQM SLDGNFAGLP ATNQACSGGD NGNGWRGQYD DNSATSFNR // ID M4CE48_BRARP Unreviewed; 758 AA. AC M4CE48; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra002479.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra002479.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002479.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra002479.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002479.1-P}; RG EnsemblPlants; RL Submitted (FEB-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra002479.1-P; -. DR EnsemblPlants; Bra002479.1; Bra002479.1-P; Bra002479. DR Gramene; Bra002479.1; Bra002479.1-P; Bra002479. DR InParanoid; M4CE48; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000011750; Chromosome A10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 637 719 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 758 AA; 83796 MW; BDB7D15F0E73290B CRC64; MEFDLNTEFA EVEEEENDKG KRLGVSPSSS SSCSSGSSSS SSTTASASSI YSELWHACAG PLTSLPKKGN VVVYFPQGHL EQGAMVSYSS PLDIPKLDLS PQIFCRVANV HLLANKETDE VYTQVTLLPL QELSVLNGEG KEVRELGGDE EKNGSSSVKK TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FAPLDYKQQR PSQELIAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KSLVSGDAVL FLRDENGELR LGIRRSARPR NGLPDSIIQK YSSSSILSLV ANAVSNKSMF HVFYSPRATH SEFVIPYEKY ITSIKNPICI GTRFRMRFEM DDSPERRCAG VVTGVCDMDP YRWPNSKWRC LLVRWDESFM SDHQERVSPW EIDPSGSLPP LSIQSSPRPK RPWAGLLGTT TPQGNPITER GGFLDFEESV RPSKVLQGQE NIGSATSSSP LQGFDVMNRR ILDFAGMQQS HANPLLLSSR VKDRFGEFVD STSLDLDRFP RVLQGQEICS LRSFPQIAGL SPGKASLGYN GAFAYQANKT SFYPLASQGI RSSHIPYQSA GDKSLSHPSS RKFDAQGEGG GLPKIDMMGA EKGREVNMNA STTGCKLFGF SLPVGTPASN QQSSSKRICT KVHKQGSLVG RAIDLSRLNG YNVLLTEFER LFNMEGLLRD PEKGWRILYT DSENDMMVVG DDPWHDFCSV VLKIHLYTKE EVENGNDDNR SCLEQAALMM EASKSSSVSQ PDSSPTGH // ID M4CE78_BRARP Unreviewed; 218 AA. AC M4CE78; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra002509.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra002509.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra002509.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002509.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra002509.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra002509.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra002509.1; Bra002509.1-P; Bra002509. DR Gramene; Bra002509.1; Bra002509.1-P; Bra002509. DR InParanoid; M4CE78; -. DR OrthoDB; EOG09360MYO; -. DR Proteomes; UP000011750; Chromosome A10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 218 AA; 24618 MW; F4897433CB96AFFC CRC64; MKKGDSSDDR LPKFFKVYLP NDSGDDLEIP VSFNSCLPSS VPKSVTVTNI NGHVWKLKLK KLSGDPEKFS MVDGWKRIVK DEDLKGGEFL AFEFDGSRLF NFCVYGQATQ LLDDPDSPSF TVILNPKKKS QLLIPSHIMK DYNLHFTERI TIVDPLVPKF GTLERKIKLQ DNGCLFVKGF GSVFRRNNVK TTDTIICEVK KNGNDVAHIL KVHIVRGL // ID M4CFZ8_BRARP Unreviewed; 283 AA. AC M4CFZ8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra003130.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra003130.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra003130.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra003130.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra003130.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra003130.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra003130.1; Bra003130.1-P; Bra003130. DR Gramene; Bra003130.1; Bra003130.1-P; Bra003130. DR InParanoid; M4CFZ8; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 31894 MW; FCF0FC3F2146B137 CRC64; MSESEEDVDL PRFFKVFLSE TASESMAIPM SFIEHLEDPL PQTAKLQGIG GGVWTVSFKK IRDCAYFTSG WSKFAEDHEL KHGEFLTFVY DGSHTFEVSV FGRSGCKEIR AEVETVELSD ANSDKEEEDS SVVADSNEEE EEGDDDSSFI AGEDDEVSQS LSHVDSDDTV SNAEVVAGFS NLEVESNPCF TTTLKNRIYE LLIPANVVKE HGLTFCDRIK YIDGEGIMHG AKGKWSDDRI CFKGWDRICR RNRLKERDTV HCEMLHIRNK VHTIKITVTR GRG // ID M4CGZ9_BRARP Unreviewed; 286 AA. AC M4CGZ9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra003482.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra003482.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra003482.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra003482.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra003482.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra003482.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra003482.1; Bra003482.1-P; Bra003482. DR Gramene; Bra003482.1; Bra003482.1-P; Bra003482. DR InParanoid; M4CGZ9; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 286 AA; 32322 MW; 10C6DD8113A31E6C CRC64; MNQEEENPVE KASSMEREHM FEKVVTPSDV GKLNRLVIPK QHAERYFPLD NNSDSSKGLL LNFEDRTGNS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRD PGNKDKLFID WRRRPKIPDH HHQFAGAMFP RFYSFSHPQN LYHRYQQDLG IGYYVSSMER NDPTAVIESV PLIMQRRAAH VAAIPSSRGE KRLRLFGVDM ECGGGGGSVN STEEESSSSG GGGGVSMASV GSLLQLRLVS SDDESLVAME AASVDEDHHL FTKKGKSSLS FDLDRK // ID M4CHI2_BRARP Unreviewed; 546 AA. AC M4CHI2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra003665.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra003665.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra003665.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra003665.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra003665.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra003665.1-P; -. DR EnsemblPlants; Bra003665.1; Bra003665.1-P; Bra003665. DR Gramene; Bra003665.1; Bra003665.1-P; Bra003665. DR InParanoid; M4CHI2; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 546 AA; 59808 MW; 503343445B4FEEC8 CRC64; MSPPPSATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSFSTA APVPCVVSAV ELLADPITDE VFAHLALQPI SPEHFSPSNF SGFGSDDDDD NNSNSNKNKV VTFAKILTPS DANNGGGFSV PRYCADSVFP PLDFHADPPV QKLFITDIHG VVWDFRHIYR GTPRRHLLTT GWSKFVNGKK LIAGDSVVFM RKSVDEMFIG VRRAPISNHG DEYYGGGKKG FRRIGMGKLT AEAVSEAVNK AVQGYPFEVV YYPTAGWSDF VVRAEDVEVS MAGYWSPGTR VKMAMETEDS SRVTWFQGVV SSTFQETGLW KQLQITWDEP EILQNLKRVN PWQVEVVANS SHLLAIYPPA KRLKPSSSAS GFLSGEGEML YSGRGQQAVD PSPYLFSYTT FPAGMQGARH YEFGSFNSIG FIGENTPQLC TNNFFSPLPG LRKVSTEMVN YGSPLSDDLS PNSNTTNVSS GNELVGNRGH AVRVSSIQLF GQIINVQELT ESGLAEGLYE EDGSKESSDN EVVNETQLSL TYAQGM // ID M4CJW7_BRARP Unreviewed; 297 AA. AC M4CJW7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra004501.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra004501.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra004501.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004501.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra004501.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004501.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra004501.1; Bra004501.1-P; Bra004501. DR Gramene; Bra004501.1; Bra004501.1-P; Bra004501. DR InParanoid; M4CJW7; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 3 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 297 AA; 33822 MW; 32A5DFAF06206160 CRC64; MMMTNLSLSR EGEEEEEEEQ EEAKKPMEEV EREHMFDKVV TPSDVGKLNR LVIPKQYAER YFPLDSSTNE KGLLLNFEDL AGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRCVGDSGR DSRLFIDWRR RPKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP RHHHHSGYNY PQIPREFGYG YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ // ID M4CK85_BRARP Unreviewed; 249 AA. AC M4CK85; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra004619.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra004619.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra004619.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004619.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra004619.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra004619.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra004619.1; Bra004619.1-P; Bra004619. DR Gramene; Bra004619.1; Bra004619.1-P; Bra004619. DR InParanoid; M4CK85; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 28442 MW; B651B9A34D9FADA8 CRC64; MEIPREPHFF KLLLPGFQSG VAIPLDFYTK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EIQYTHPHIV KEDADGDDAP TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GSIASTSRN // ID M4CM64_BRARP Unreviewed; 248 AA. AC M4CM64; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra005301.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra005301.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra005301.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005301.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra005301.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005301.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra005301.1-P; -. DR EnsemblPlants; Bra005301.1; Bra005301.1-P; Bra005301. DR Gramene; Bra005301.1; Bra005301.1-P; Bra005301. DR InParanoid; M4CM64; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28737 MW; 1677F81180E93B2B CRC64; MSINQYSSDF NYHSLMWQQQ QHRHHHHQND VAEEKEALFE KPLTPSDVGK LNRLVIPKQH AERYFPLAAA AADAMEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKQLD AGDVILFHRH RVDGGRFFIG WRRRGNSSSS SDSYRHLQSN ASLQYYPHAG VQAVESQRGN SKTLRLFGVN MECQLDSDLP DPSTPDGSTI CPTSHDQFHL YPQQHYPPPY YMDISFTGDV HQTRSPQG // ID M4CNU8_BRARP Unreviewed; 267 AA. AC M4CNU8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra005886.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra005886.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra005886.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005886.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra005886.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005886.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra005886.1-P; -. DR EnsemblPlants; Bra005886.1; Bra005886.1-P; Bra005886. DR Gramene; Bra005886.1; Bra005886.1-P; Bra005886. DR InParanoid; M4CNU8; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 156 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 156 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30349 MW; F487FEB137829F71 CRC64; MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA AAAECPRQDS YYDQNMYNYY TPHSSAS // ID M4CRZ7_BRARP Unreviewed; 265 AA. AC M4CRZ7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra006989.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra006989.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra006989.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra006989.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra006989.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra006989.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra006989.1; Bra006989.1-P; Bra006989. DR Gramene; Bra006989.1; Bra006989.1-P; Bra006989. DR InParanoid; M4CRZ7; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 265 AA; 29896 MW; 6499069E81BCA9A4 CRC64; MAENEDDVVL PRFFKVFLSE TASESMAIPM SFNEHLEDPL PQKAKLQGTG GGVWTVTFTT IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGHHTFEVSV FGHGRCKETR AVVETVDLSD SGEEEEEEDS SVEDDGEVEK VSQSIYPVDS NQTVSDDAVV AWLSSMEVTG NPCFTTNLKQ RTYELLIPAN VVREHALTFG DNIKYIDAEG VMKGVRGKWA EDRVCFKGWD SICRRNRLKE RDTVNCEMLH IRKKVHSVKI TVTCG // ID M4CTT8_BRARP Unreviewed; 1055 AA. AC M4CTT8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra007632.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra007632.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007632.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra007632.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007632.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00071, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra007632.1-P; -. DR EnsemblPlants; Bra007632.1; Bra007632.1-P; Bra007632. DR Gramene; Bra007632.1; Bra007632.1-P; Bra007632. DR InParanoid; M4CTT8; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR007789; DUF688. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR003851; Znf_Dof. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF05097; DUF688; 1. DR Pfam; PF02701; zf-Dof; 1. DR ProDom; PD007478; Znf_Dof; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. DR PROSITE; PS01361; ZF_DOF_1; 1. DR PROSITE; PS50884; ZF_DOF_2; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00071, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00071}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00071, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00071}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00071}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 455 553 PB1. {ECO:0000259|PROSITE:PS51745}. FT DOMAIN 804 858 Dof-type. {ECO:0000259|PROSITE:PS50884}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1055 AA; 118826 MW; 422386C339603E05 CRC64; MANVDGDDSR SSFPSSYQDQ LYTELWKACA GPLVEVPLVG ERVFYFPQGH MEQLVASTNQ GIESEKIPDF KLPPKILCQV LSVMLKAEHD TDEVYAQITL KPEEDQSEPT SLDPPIVEPT KQMFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMTQ AIPTQELVTR DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV SSKRLVAGDA FVFLRGENGD LRVGVRRLAR HQNTMPASVI SSQSMHLGVL ATASHAVNTQ TMFLVFYKPR ISQFIVSVNK YMEAMKHGFS LGTRFRMRFE GEESPERIFT GTIVGIGDLS SQWPASTWRS LQVQWDEPTT VQRPDKVSPW EIEPFLPSSP ASTPSQQSQP KSKRSKPIES SSLSPGQASF LGVQAEPPPP PASSCYRLFG FDLTSNPPAP IPPDKQPMDT SEAAKCQDPI TPSSVNEPKK QQTSRTRTKV QMQGIAVGRA VDLTLLKSYD ELIKELEEMF EIQGQLLPRD KWIVVFTDDE GDMMLAGDDP WNEFCKMAKK IFIYSSDENL LPSSSWNDHK HQQERCLLWV LKMMKREEEE MIITSKLQLV LAAKSRKQQY TSSPVINHHV SLSLLSSPDD LSHSRASVPF AWEEEPGKPK QHTLLRVPPK YPKRLDLPPR LLLPREGTET PLACDHPRYL AALKRWFRLR KDRADDDNDV VGQCSLVVSS ENENDKKITR TRSRLHCLYD VARCYLWFMD ATKWTQGFQE MINVKPMDQM ISNTNNNTSQ QQQPTFITTT TRPNATAANG GSGGNNNNTA ATMETRKARP QEKVNCPRCN PTNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG GSSRKNKRSS TPLPSHSNPK LPDLNPPILF SSQIPNKSSK DLNLLSFPVM QDHHHGMSQF LHMPKIENNN TSSSIYASSS PVSALELLRS NGVSSRGMNT FLPGQMMDSN SVIYSSLGFP TMVDYKQSNN NLSFSIDHHQ GIGNNTINSN QRTEDNNHTD DMNGASRILF PFSDMKELSS TTQDKSHGNN TYWSGMFTNT GGSSW // ID M4CTV2_BRARP Unreviewed; 292 AA. AC M4CTV2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra007646.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra007646.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra007646.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007646.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra007646.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007646.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra007646.1; Bra007646.1-P; Bra007646. DR Gramene; Bra007646.1; Bra007646.1-P; Bra007646. DR InParanoid; M4CTV2; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 126 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 126 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 32955 MW; 1E9F0467F14E74D2 CRC64; MNQENKKPLE EASTSMEREN MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DNSSTNNKGL LLDFEDRTGS SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR DPCNKDKLYI DWRRRPKIPD HHQFAGAMFP RFYSFPHPQM PTSFESSHNL YHHRFQRDLG IGYYPTAVIE SVPVIMQRRE AQVANMASSR GEKRLRLFGV DVECGGGGGG SVNSTEEESS SSGGSMSRGG VSMAGVGSLL QLRLVSSDDE SLVAMEGATV DEDHHLFTTK KGKSSLSFDL DI // ID M4CUE0_BRARP Unreviewed; 717 AA. AC M4CUE0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra007835.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra007835.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra007835.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007835.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra007835.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007835.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra007835.1-P; -. DR PRIDE; M4CUE0; -. DR EnsemblPlants; Bra007835.1; Bra007835.1-P; Bra007835. DR Gramene; Bra007835.1; Bra007835.1-P; Bra007835. DR InParanoid; M4CUE0; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 375 471 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 496 593 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 628 717 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 375 471 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 496 593 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 628 717 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 717 AA; 81466 MW; 95A1C6C5EC535F3E CRC64; MTATVTTTER EGPLAELTTL DIPVAFFLKH LDKRNKGKTA KLRSDTSETT WNVKLDGRRF SDGWEYFAVA HDLRVGDIVV FRHEGELAFH VTALGPSCCE IQYGEDSQEE DKSGELCDAM EEISRKKKRP KTEIDFSKDQ SCFVITVTPS NLRRDTVYLP KAFAVVNCLM KKFEIVLVNE ERESWKLNLR QDSYLGRFYM SNGWRSFCVA NGKKPEDMFT FKMVQNETTP VLKLLPWNNE DLHNPASNGL KSKFKIDLMN EKGESWTIDL RHEPYSGRFL IRSGWRSFCA ANGKKPGDMF NFKLIRNVET PVLKLFPLNL PKLEPSEDTR QGLEATEREF LGVETNRDDS RQEAIRKGKW LEANEITIKE ENISTTENRF VTLTLTTSKL DLPKEFTSSN LLEKECRKIV LRDRWERSWA MDLAFKKSSD TFYIRQGWRS FCDENGKKAG SFFVFKLVGN RETPLLSLCS TGSTSNRNNK ESCVEHSTTP PIKSRLMTLT IEHASFIKGS LHLPLRFMKK HGLDKPRLIT LLGKDGTKWV ANLRRESSGG RMRLGKGWKD FALANGLKVG DSFTFELVGK NNTPPMLSLI RTESTSDTRQ PSSGNKTREG KQTIEERRDS SSAIKNQVVT LTLTPDDVRA CQLILPSQFM KANGIYKLGK ITLLGENGTR WLAFLLSKDG LLALGCGWKD FCEANGVKTG ESFTLECICE ANDTTHV // ID M4CUE1_BRARP Unreviewed; 1063 AA. AC M4CUE1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra007836.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra007836.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra007836.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007836.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra007836.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007836.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra007836.1; Bra007836.1-P; Bra007836. DR Gramene; Bra007836.1; Bra007836.1-P; Bra007836. DR InParanoid; M4CUE1; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 8. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 7. DR SMART; SM01019; B3; 8. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 8. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 416 511 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 543 638 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 645 741 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 785 881 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 942 1058 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 416 511 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 543 638 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 645 741 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 785 881 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 942 1058 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1063 AA; 120264 MW; 876251CCF2F71B1F CRC64; MAKSTLLHPQ FFHTLVPGCG FHTHLIIPLD FFSKYIEGRS VDNTAHLKSG SSDRTWQVKM AGPILSDGWR EFAVAHSLQA GHLILVRYEG DMVFHVTDCR EIPSNNNKHS HPRIDDDDVP KKKKKRAKTN SNETEADSSS LDNSCFVATV TAFNLLIDTL YLPQHFTSSN GLTRESHKIV LLDGEGKSWT LDMRFNESSD TFYMTRGWRS FCEENGQEAG GFFTFKLVGN GETTVLSFRP TESISSTMQR DSSQEEDTEW ESDEDEPLMQ TENKKKCNPK RRAVPYSSYS PCHKRFLTFT LPPDCFRIER LSLPKQFLRE NGINKPGEIC LLDKDGMKWP TSLLRDKKGI MSLGKGWKEF VKSNGLASGF TLKLIWEDTT PAFSLCCPES TSDKEQQEYF KHIKKQSLYI DPSNNGDNSS KDSSPSSHNP LRLPKQFVME SNMNKPGVIY LLGKDDTKWT TKLVKERDGR MKLGSGWTVF AEANGFKTGE SVTLESIWED GTPMIRFLRT GSNSSETKKN ESVSTEVTEP KTSGSSSEIH DRFVTLTLLP EDVKAGVLII PSQLLEANGV NKLGKITILG ENKMELSGYL LSRGGTVALE NGWGEFCEAN GVKLGESFTL EFIKKPDKTT HVEGKRSRNL ENMVNQHFFQ PLLPGFHSHL TIPVAFCSKH VEGRKNEHMT TAKLRSDVSD DITWKVKIED GRKLTDGWKE FALAHDLRVG DIVIFRQEKD MAFHVTMFGP SCCEIQYGSR LNKNKLNLSK IQNKKKVKKK NKKRYIKSSS LDPSCFVNNV RPSSLRDNRL TLPKRFVREN GLETRCGEIV LMNEKGRSWT LNLSRKDSCG TMYITGGWKS FCNASGLRTG SLFTFKLIKR GDSLVLLKSP SSTKPAEEDC LEAYEREPDS EEKSNQDKKP RLLWKASTSS PSQKKPRSLW KASTSSPSQN LFLTLTLKIS DVKNSRLFIP VNFTRLHGIN KETKMAMLDK NGVKWSTSLR SETSGGDRIR LVGGWKEFFK ANCVDRIRLV GGWKEFFKAN CVEIGESIIV KLIWEGDKSC VLEFYSKVKQ ETK // ID M4CUE5_BRARP Unreviewed; 856 AA. AC M4CUE5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra007840.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra007840.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra007840.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007840.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra007840.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra007840.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra007840.1-P; -. DR EnsemblPlants; Bra007840.1; Bra007840.1-P; Bra007840. DR Gramene; Bra007840.1; Bra007840.1-P; Bra007840. DR InParanoid; M4CUE5; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 5. DR Gene3D; 4.10.60.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000504; RRM_dom. DR InterPro; IPR001878; Znf_CCHC. DR Pfam; PF02362; B3; 4. DR Pfam; PF00076; RRM_1; 1. DR Pfam; PF00098; zf-CCHC; 1. DR SMART; SM01019; B3; 5. DR SMART; SM00360; RRM; 1. DR SMART; SM00343; ZnF_C2HC; 1. DR SUPFAM; SSF101936; SSF101936; 5. DR SUPFAM; SSF54928; SSF54928; 1. DR SUPFAM; SSF57756; SSF57756; 1. DR PROSITE; PS50863; B3; 5. DR PROSITE; PS50102; RRM; 1. DR PROSITE; PS50158; ZF_CCHC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047}; KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}. FT DOMAIN 8 75 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 124 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 441 536 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 562 660 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 632 713 RRM (RNA recognition motif). FT {ECO:0000259|PROSITE:PS50102}. FT DOMAIN 748 764 CCHC-type. {ECO:0000259|PROSITE:PS50158}. FT DNA_BIND 8 75 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 124 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 441 536 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 562 660 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 856 AA; 95878 MW; C6224143BA20BF73 CRC64; MAKPRLLRPQ FFHALVPGFH THLMIPEDFF SKYIEEGTSM AAELISDASD KKWRVKMTGR RLGDGWREFA TSPSLIIFGQ SCCEIQDIWP ACNNIELPRN KKVKMKSPEA EAEPLSSSSS DNSCFVALVT ASSLRTDKLY LPQHVTSSNG LTRKCCKIVL VDGGERSWTL DLSFNKSSDT FCMSRGWRNF CEENGQEPGG FFMFKLVGNG ETPVLSLGLT DSNNDTRDCS QASERESLST EFSSKDEYIQ GEDSEDDCSS MESMMETGKK KCSPKRRVTS YSSYYKRYVT FTLPHGYATH NHTLSLPALF VRENGINKPG EVHLLGKDGT KWPTSLLVNI RGSMSLGKGW KEFVKANGVE SGFTLKFMWE DTTPVFSLCS ADSTSEREQE EYFKGIKKQS LFIDPSNIDN SSKDENNKEE NMSWEGQKRG RDSTPLSLKQ FVTLTITPCC FITCRLVVPA QFARENSLNK LRMIYLLGRD GRKWLTKIHR DKKGRMSLGK GWKDFVEANN FKSGDSFAME LIWKDGTRML RLSGAESSSS KAYVSTEAGS SSDSSSAIQN RSVRLTLTPE EVRACKLYLP SEFMKANGIN RLGKITLLGE NKMEWSAYLL TRDGTVALGM GWDEFCKANG MSRVYVGNLD PRVTERELED EFRVYGVIKS VWVARRPPGY AFLDFEDSRD ARDAIRDLDG TKYESFLNYH SAEFDILVML GKNGWRVEQS HNRGGGGGRG GGGGRGDGGR GRGGSDLKCY ECGESGHFAR ECRSRGGGGG GGSRRGRSPS PRGRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRAREEV PYTNGNGLKD VRRSRS // ID M4CWF5_BRARP Unreviewed; 338 AA. AC M4CWF5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra008552.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra008552.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra008552.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra008552.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra008552.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra008552.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra008552.1; Bra008552.1-P; Bra008552. DR Gramene; Bra008552.1; Bra008552.1-P; Bra008552. DR InParanoid; M4CWF5; -. DR OrthoDB; EOG09360IMA; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38454 MW; 603EED839C58E032 CRC64; MSTRASTHQE PAENGASGSD NNNNNFNSAM REPMFQKVLT PSDVGKLNRL VIPKQHAENY FPLEDNQTGT LLDFQDKNGK MWRFRYSYWK SSQSYVMTKG WSRFVKEKKL NNGDTVSFHR GYVPDDNEPE QRRNILFIDW RNRPDTNLLH NINHHHYPIL GPPPYPTASY YPVTEYSMPH YGRFPSLYHN QFLGYGYGPY GKTVTGGRYY AGSPLDHHHR WNLGRSEPFF YDSCPVFPTT RLTSSLAMLP SSPPSQPPQE GTAKKLRLFG FDVEESSSSG EARAEMGVAG HSSSSPVVIR DNESSWRSPR GEMGGLSSSV VNLSDDEDYK RKGKSLEF // ID M4CY74_BRARP Unreviewed; 239 AA. AC M4CY74; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra009171.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra009171.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra009171.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra009171.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra009171.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra009171.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra009171.1; Bra009171.1-P; Bra009171. DR Gramene; Bra009171.1; Bra009171.1-P; Bra009171. DR InParanoid; M4CY74; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011750; Chromosome A10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 104 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 239 AA; 26478 MW; FD32FCEF0D0226BC CRC64; MSVNHYSTDH HHHHNTLFWQ QLHTTDATET TTATWLNQDQ KESLFEKTLT PSDVGKLNRL VIPKQHAEKY FPLNAISNNA DASTEKGMLL SFEDELGKSW RFRRGQGSSS AVANPTSYSS SMVAASPYLQ VHASSNYSNP PSHSEYSHYG AAVATASETH SIPSSSAVGS SRTVRLFGVN LECQRDEDDG DDSVAATTAT ECPDGYYGQN MYYYYTPHPH NMNIAFTGDT MKQLGDRRG // ID M4D044_BRARP Unreviewed; 269 AA. AC M4D044; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra009842.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra009842.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra009842.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra009842.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra009842.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra009842.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra009842.1; Bra009842.1-P; Bra009842. DR Gramene; Bra009842.1; Bra009842.1-P; Bra009842. DR InParanoid; M4D044; -. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 269 AA; 30154 MW; B86B21C8D79E248C CRC64; MSGKSVYNLL QDNVSKPRFC KSLSSGETWS SKSVRIIPEE FVRSAPGAFE HRVVFSVRWG NSWQLWLQRD KNGLFMEEED WDEFVSDNFL GPNDVLLFTH ADTMFIEVQI YKQASYHLKE ITSAPLQADP QAEVVTPMPQ TSPPAPAPAS TSGARQAGAH VNNPEQYLSN PSNPFFVKTL GKKIDVLYVS HLVTEKYGLQ FGPHNSTMFY LLPNEKIEAN TKIYGGCACF NGWAAICRKY KLKQGDAVVC ELERSGAVVT AVRLHFPNE // ID M4D176_BRARP Unreviewed; 807 AA. AC M4D176; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra010225.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra010225.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra010225.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010225.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra010225.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010225.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra010225.1; Bra010225.1-P; Bra010225. DR Gramene; Bra010225.1; Bra010225.1-P; Bra010225. DR InParanoid; M4D176; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 154 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 474 568 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 674 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 707 803 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 474 568 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 578 674 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 707 803 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 807 AA; 92024 MW; 49036277C33A940D CRC64; MVNPPLQSPT NPHFFQPLLP GFDTHLTIPF AFFSKHIQGK TMKKTVKLRS YTSDRTWEVK IDGRRLTRGW NDFAKAHDLR IGDIIIFKHE GDMAFSVTPF GPSCCEFQYT QSHIIKKEAD IDDDDEDDNE RQYKIRNGLK PKTEPMSSYS FDYCFVSEVT ASNLKLDTLY LPVGARSSSA LNKRCHEMIL VNKEGNSWTA SLKFRESGGM YYIRRGWRRF CLDNRRKVGD LFVFNLVGDG KTTPMMCVCP EEECSELVSK HLSRGRRSRK TKKRSKWVAS SSSRRNRFLT ITLTRYNFIS SKFILPIAFT NINGLNKYKE IILMDKHGVK RLTKLVQDGP HNNRRGLGKG WKLFCEANDV FKIGESFVLE LVWEDTVPVL KFCSKNVPVA FFSKHVQGRN GDKTARLRSD ASDTTWEVGE LVFHVTALGS SCCEVEYTTL DDGDDNKETV LASDIKPMKK RAKKNPRKKD SCSCFLANVT VSSLHEDKLY VPVSFVRSNG LSNTYCKIVL LNEKGRSWKL SLVHDKSGSY LRQGWRSFCR ANGINGGRYT FKLVRNSETP VIRLYQAEHR HEDNTHSYLV GSLTPSSLRN DTLYLSRRFV NSNGLKGKCC EMILKNDNGG TWCLVLRRNE TNETTVISRG WRSFCHANGL KVRDPFKFKL VGTREKPVLQ FCPSESNRNT RHVDCSEGDV HSLSKKEASS SPCQNPFVTL TVTQYSIKSN KLRLPLRFTR VNGINKAGKI TLMGQDGVNW MVHLTNENKC GKLRLGRGWK GFCEAHGVKI GESFVLELIR EKDATPVLKF CNKVNCV // ID M4D179_BRARP Unreviewed; 499 AA. AC M4D179; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra010228.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra010228.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra010228.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010228.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra010228.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010228.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra010228.1-P; -. DR EnsemblPlants; Bra010228.1; Bra010228.1-P; Bra010228. DR Gramene; Bra010228.1; Bra010228.1-P; Bra010228. DR InParanoid; M4D179; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 155 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 155 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 499 AA; 56260 MW; 0B262F9426E91FAE CRC64; MTIPPTFSLF HHRFITGDKP VLTVDDEFLR KHTKVLLISD SSDKIWKVKL DGSRLAGGGW EEFAKAHSFR DGDLLVFRHD GDEIFHVSVS PRSDSCDISH HASPSLVDTD DVETDDDYSE SDDGEDEYDD DDDGGEDDAG NIMVNKNTKA GFSCILRARV TPYSLIKDRL DLSKDFTVVS FNEHNKPCEI DLVNEKGRKW TLRLSKNSTS GVFYIRQGWV NFCSANGLSQ GDICKFKLSE NGERPVLRLC PSSNSHEEEE ECLEADAVKT SSIRGCSKEK RKGKKKNSPS QFLTVKLTPN RLQTGQLYIS SVFVNESGIK KSGEITLMNK DGRKWPSYLQ MTGQCGSEWF YLRHGWREMC KANGVKVNDS FVLELIWEDD NPVFKFCSKA ENKGNGNGRL RKKRACETSI VETERRKRGR PRVSNTNSSN LQRTRQESCS VSDQVASVKL SILDTLNTVR QFRADIEARE KNLEASSLEV DALGERILGI SQILNNNLV // ID M4D2S3_BRARP Unreviewed; 832 AA. AC M4D2S3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra010776.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra010776.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010776.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra010776.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra010776.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra010776.1-P; -. DR EnsemblPlants; Bra010776.1; Bra010776.1-P; Bra010776. DR Gramene; Bra010776.1; Bra010776.1-P; Bra010776. DR InParanoid; M4D2S3; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 832 AA; 91734 MW; 58D6D94507F095E7 CRC64; MRLSSAGFNP HPHPHEVTGE KRVLNSELWH ACAGPLVSLP PLGSRVVYFP QGHSEQVAAS TNKEVDAHTP NYPSLQPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNAQE QKDSYLAAEL GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LMARDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RAHRPQTVMP SSVLSSDSMH LGLLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGICDLDPAR WANSHWRSVK VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPSGLPSFHG LKEDDMGMGM GMSSPLMWDR GLQSMNFQGM GVNPWMQPRL DASGLLGMQN DAYQAMAAAA LQDMRGIDPA KAAASLLQFQ SPSGFSMQPP SLVQPQMLQQ QLSQQQQQVV DNHNLSASSA AMSQSNTSLL QSMTPLCHQQ SFSDTNGGNN PITQLHTLLS NFPQDESSQL LNLTRTNSAM TSSGWPSKRP AIDSSFQHST AVNNNQSVME QLGQSHTSNV SPNAVSLPPF PSGQEENHSD PHSHLLFGVN IDSSSLLIPN GMSNLRSIGI EGGDSTTLPF TSSTFNNEFS GTMTTPSSCI EEPGFLQPSE NQQSNTFVKV YKSGSFGRSL DITKFSSYNE LRSELARMFG LEGQLEDPVR SGWQLVFVGR EEFVSSVWCI KILSPQEVQQ MGKRGLELLN SAPSSDNVDK VPSNGNCDDF GNRSDPRSLG NGIASVGGSF NY // ID M4D3E8_BRARP Unreviewed; 359 AA. AC M4D3E8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011002.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011002.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011002.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011002.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011002.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011002.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra011002.1; Bra011002.1-P; Bra011002. DR Gramene; Bra011002.1; Bra011002.1-P; Bra011002. DR InParanoid; M4D3E8; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 191 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 191 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 40279 MW; 3FB30711CF6EB552 CRC64; MDYSCLDDNT SNTSETLSMS KKTPSPPLPL PPAMRLYRMG SGGSSVVLDL ENGVETESSR KLPSSRSKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AASYDIAARR FRGRDAVTNF KSPASDAESA FLEAHSKAEV VDMLRKHTYA DELRQSERKF LDGDGNGRKR CEFSKTTVTN ENDGVSREVL FEKTVTPSDV GKLNRLVIPK QHAEKHFPLP VTVTPSPTKG VLINLEDRTG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LRAGDVVCFE RSSGPDRQLY IDWKVRSGIE KITPVQNVVR LFGVNIFNAT TTNANTNDVV GESGSKKRFR EVDLFALGCS KKQAIINVL // ID M4D3N2_BRARP Unreviewed; 302 AA. AC M4D3N2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011086.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011086.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011086.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011086.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011086.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011086.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra011086.1; Bra011086.1-P; Bra011086. DR Gramene; Bra011086.1; Bra011086.1-P; Bra011086. DR InParanoid; M4D3N2; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 302 AA; 34169 MW; 505956AA3BFB530F CRC64; MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRDEVY FGQGWAKFVE DNGLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDKE DTNTSSEPEI AQTVPNATNQ GKKRVVVQDS DDSFISEDSD SLSDSSYSPP NDDTLLDVTP KVTNSRKKAS TIQNPEVYLD DPNNVCFETT VKKRIYDLSV PSQTVRDYCL KFQDYVYYID NHENGMLEAR VATWQDYRVS IKKWERICER NGLKKGDRLL CELFRKEGLV YAVKIHVVTT TS // ID M4D3Q6_BRARP Unreviewed; 340 AA. AC M4D3Q6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011110.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011110.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011110.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011110.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011110.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011110.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra011110.1; Bra011110.1-P; Bra011110. DR Gramene; Bra011110.1; Bra011110.1-P; Bra011110. DR InParanoid; M4D3Q6; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38199 MW; 02BD0EEF9C616B6A CRC64; MKPSLVIGVW KASVMVIPAS YYDELPLVLP KTALLQGSDG GCFWKVAMVK RRDEVYFGQG WAKFVEDNGL RDGDVLTFVY DGSRSFTVDI YGGSRACKEV RAVAQVISVD DDDDKEDTNT SSEPEMAQTV PNARNQEDST IIEPEVAQRV PRTRNKGKKR VVVQDSDDSF ISEDSDSLSD SSYSPPNDDT LLDVTPKVTN SRKKGELRSV NSNVGSTSNS SGSVSRKRQS TIKNPEVYLD DPNNVCFEII IKNRIYELNV PKQIVKDYCL KFQAYVCYID NHGKLEARAA TWQDQRVTIK KWERICKRNG LKKGDRLLCE IFRKEGLVYA VKIHVVATTS // ID M4D481_BRARP Unreviewed; 987 AA. AC M4D481; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011285.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011285.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011285.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011285.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011285.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011285.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra011285.1; Bra011285.1-P; Bra011285. DR Gramene; Bra011285.1; Bra011285.1-P; Bra011285. DR InParanoid; M4D481; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 182 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 318 419 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 533 591 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 642 739 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 781 878 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 182 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 318 419 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 533 591 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 642 739 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 781 878 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 987 AA; 111624 MW; 1F1FA19BA40188C5 CRC64; MVVPPPKPSL FQLTFLTGDK PLLTLDDDEF LRNHTKVLLI SEASDKIWEV KLDGNRLAGG WEEFAAVSNF SHGDVLVFRH NGEEIFHVAV SSESDDDESG ETDDRESDDD ESGETDDRES DESHDPDDSE YDESNDPDDS EYDESNDTDD SESDDSEDND EGDSSLVNKS EKPEADTSSD CFLRARVTPY SLTKDRLDLS RDFKFMSFDE NKKPFEIYLA NEKGRKWTLR LSRNISSGAF YITRGWSNFC AANGLIRGDF CYFKLSESGE RPVLLLCSHE SGNVHEDKEE EEECPEADAV KICSVGGCSN EKSTPSRFLT RKFTPSRFKT GQLYISMFSS GVLRESGIKK SGEMTLLDND GRKWPSYLHK TGQPGGEWCY IREGWREMCE ANGVEVNDSF VLELIFEDAN PIFKLHSKIK NKGKGNIVTS KKRALHARTA EKTPGVEIDG ERGSKRGRTR GSQPESCSVS DQVANVRQSI QDTLDTIRHF RAELETREKN LEASLLEVDD LAVCLFLLLL QTLDTEFLRN HTKVLLTSDA SDKTWKVKLD GNRLAGGWEE FAAVNSFSDG DVLAFRHNGD EIFHVAVSSE SDDDTDDSES DESDDVDDVE DEDNNEDNDE GDILVEKNKK PEADSSSGYS CFLRARVTPY SLNKDRLDLS KDFKFMLFDE HKKPCEIYLA NEKGRKWTLI LSRNISSGAF NIRRGWANFC SANGLSQGDI CNFKLSESGE RPVLLLCSHE SGNGHEDKEE EEEEEESPEA DAVKICSVGG CSKEKNTTSR LLTSEFTPNR FKTGQLTISS VFLRESGIKT SMEITLLNKD GRKWSSYLQM SGQRGREMFY MRKGWREMCD ANGVEVNDSF VLELICEDTT PIFKFHSKLN LELKLLLEML KMFLELRFRL KTRKKEILWK RLQKMMPVNA FSGSAPPVAK YLREKRKKGR PNTDNDLQVG QTVSGEVKGP IDGGYIVDVK VKDSDTKFKD VVFLNRK // ID M4D482_BRARP Unreviewed; 429 AA. AC M4D482; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011286.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011286.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011286.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011286.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011286.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011286.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra011286.1; Bra011286.1-P; Bra011286. DR Gramene; Bra011286.1; Bra011286.1-P; Bra011286. DR InParanoid; M4D482; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 115 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 242 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 115 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 242 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 402 426 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 429 AA; 47835 MW; 76E90A51F774C141 CRC64; MATSPKSNAP FFVISLAGHN SSPIIPNAFF ATHIEGKNEL TKLKLTSDAC DTTWQVKLNG RRFADGWEDF SNAHCLRNDD VLLFREDGEM IFHVTPSGRN LRTRIKAESS STENSCILGV TSSNLRLNRV ALTKSFTKAN GLHKSWCEIN VINQSGKSWV MGLRHNKGTG QDYMRGGWRS FCRANKLKTG SFYRFELLRT GTSPALKLCS DNTSQRKCSK AKVSTNLNRE GGERSSMNRS KFMTVTLKPY MLKSRQLHFQ NSFARENGIK KGGKVNLVDK DGGRWPSCVA SGYVNGGFYL AKGWVGCCKA SGINTGDTFT LQFVREKGKT PMLQFVSKAK TKINSGTRFQ KKARVSVEGE PSHRTHASHK STVGTNNVEC KQPLETISHQ VRQGIVNVLA DVRRFRSELE IKKQNLEAVL EEFDALGMI // ID M4D483_BRARP Unreviewed; 211 AA. AC M4D483; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011287.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011287.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011287.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011287.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011287.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011287.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra011287.1; Bra011287.1-P; Bra011287. DR Gramene; Bra011287.1; Bra011287.1-P; Bra011287. DR InParanoid; M4D483; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 211 AA; 23789 MW; CFDF88D7F0E34D2B CRC64; MADPPSSPKS NAPFFVVSLA SHNSNPLIPE AFFAANNELT KLKLTSDACD RTWQVKLNGR RFTEGWEDFS NAHCLRDDDV LIFRDAGQMI FHLCRPNTST ILHKKRDVPE TEGDEIETED CPETAQMTQN RTVAIDFKPD MLRSGQLEKE ASVDGNQTTS RRQSRMIQAS RAEEEMETRV QKKARVSGEG GSSRRKQIKC WSSKLAAHES T // ID M4D484_BRARP Unreviewed; 532 AA. AC M4D484; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011288.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011288.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011288.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011288.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011288.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011288.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra011288.1-P; -. DR EnsemblPlants; Bra011288.1; Bra011288.1-P; Bra011288. DR Gramene; Bra011288.1; Bra011288.1-P; Bra011288. DR InParanoid; M4D484; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 177 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 308 404 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 177 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 308 404 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 532 AA; 59863 MW; C1B5B22E0FBBF694 CRC64; MVDPVMVSSN NKPIFFIDLS GQNSIPTIPD SFISNHVKGK TQSTKLKLTS DVSDRSWEVE LDGQRFARGW KQFSVHHGVR NDDVLSFRHD GDMVFHVTPF GRSFSHQIQF ISSTSEDENK DDEHNIFDDD VYDEEEEHAD AGNDDDDDGD STSEEELFPS SKKKAITETE TSLEDSYLVT HVTSSNLGRN QMGISNKFAR PNGLKDRQCE IDLLNEEGKS WTLELRHNKT TGQSYMCRGW TSFCQGNGIK AGSACRFKLV KNGTKPVLQL CPNTSTILHK KRDVPETEGD EIEYEDCLET PQMNQNRTVA IEFKPHMLRT GQLRLPTLFA RDNGINEAGE ITIVNKDGVE WKLHLVSVKG RGQFYIRGFK DCSRANGIKK VGDSFTLDVV RGGTSPILKI CSKEATFDGK QTTNRRPSRM IQAPRAEEEM ETRVQKKARV SAEGGSSRRT RASNKLSVGP ANLQHKKPLE PCSISDQVSK VRQSIVHTLT DVRQFRSELE IKEQNLETSL LEIDALGEKI LGISKFFNVN QV // ID M4D485_BRARP Unreviewed; 245 AA. AC M4D485; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011289.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra011289.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra011289.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011289.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra011289.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra011289.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra011289.1; Bra011289.1-P; Bra011289. DR Gramene; Bra011289.1; Bra011289.1-P; Bra011289. DR InParanoid; M4D485; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 109 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 109 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 27854 MW; 22B948F73C437B37 CRC64; MQGVPLDFAR RNGLNKGRRV IALRNQEGKT WESKLKSTRS GQVFICRNWR SFCTASKLKI GDSFQFKLLQ NTETPVFQLC SLSKVKPKKE TLSESEEDDV VDKTETPRYV KITTTASSLE IGKQHLPVHF TRGNKLNKPG KIVLVDKDKV EWSMKLNQDS RSGTMYIMGG TAWKSFCAAN GVVVGESLTL ELIRRGMILL LKFCSKMEQP PFKTKARKHK RARVQRLTRE SRSEDDVSSQ EGIVK // ID M4D6L2_BRARP Unreviewed; 327 AA. AC M4D6L2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra012121.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra012121.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra012121.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012121.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra012121.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012121.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra012121.1-P; -. DR EnsemblPlants; Bra012121.1; Bra012121.1-P; Bra012121. DR Gramene; Bra012121.1; Bra012121.1-P; Bra012121. DR InParanoid; M4D6L2; -. DR OrthoDB; EOG09360IKT; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 327 AA; 37707 MW; 08E568962BC6FFB4 CRC64; MVETSEKTPS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKKVVLVDEI GRLWDVETKI GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR FRVSVEKEPV LVKPVGISIK PEPWEDCGKR VMQNRKRVSV REEASVFGEI EPVHQRNTRK KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRKIAV GSLRLLEIPT TFLKANGIEL EEGQDIELCD ENGKKWPLKI EKHGRGCIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT CSQILVRIFR GTLLTTATKS GYHVLPM // ID M4D7I5_BRARP Unreviewed; 691 AA. AC M4D7I5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra012445.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra012445.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra012445.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012445.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra012445.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012445.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra012445.1; Bra012445.1-P; Bra012445. DR Gramene; Bra012445.1; Bra012445.1-P; Bra012445. DR InParanoid; M4D7I5; -. DR OrthoDB; EOG09360KHU; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 153 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 299 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 420 517 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 630 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 299 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 420 517 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 534 630 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 77471 MW; 2AAE3B33602BDD6C CRC64; MVDQSLLPAS SSRLPHSPPC LVQNIPVAFF STHIKGRNDH IKIAKLRTDA SDKTWKVKMD GSKFTDGWED FAVAHDLRVG DITVFRHEGE MVFHVTALGP SFCEIQYTSS HNINDDTHDQ TNNIVTGNSS REKRKRVKKN PKPVPQASLH SSCYVGSVSA SSLKHNKLYL GREFVTSNGL NKGCSEIVLK NEGGGRWTLP LKHYKSINHT YLGPGWTTFC QVNGIKAEDA FMFKLVRTGE KPVLCLCPEE SSHRDKTPVE CLEDSDDVNP LSSSSKSKES KEESLGDKRA SSSYSEDRFL TLTLTQKAVK RYQLTIPVAF FLKHVQGRND HIKIAKLTTA ASDKTWTVKM DGFKLTHGWE DFAVAHDLRV GDMIVFRHEG ELAFHVTIMG PSCCEIQYTH NINHNHTNNI IESSSSDNSL FVAKVSASNL RLDRLYLPMS FARTNGLDKM SGEQIILLNG EGRSWSLKLK HDKSDMHTFV RPGWRRFCAE NGMSHGHYTL KLIRNSGPPV IKLCGQVHNR PKPVPVVSSL HHSCFVGSVT SNSLKTDKLY LGKKFVIENG LDRGCSEMVL KNEWGGRWSL ALRFYESAYQ TYLGPGWRTF CQVNEIKVGD SFKFKLVGTG DNPVLLLCTR KMPLECPGEN SGSDTSSGDD SSEPQESEEE SLGDKNISQE CVKMEKNEEF VEMQNTKRRS L // ID M4D7P0_BRARP Unreviewed; 283 AA. AC M4D7P0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra012500.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra012500.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra012500.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012500.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra012500.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012500.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra012500.1; Bra012500.1-P; Bra012500. DR Gramene; Bra012500.1; Bra012500.1-P; Bra012500. DR InParanoid; M4D7P0; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 101 154 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 183 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 101 154 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 183 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32735 MW; 77BA1E137142A214 CRC64; MVLEYSSNHK SHHHHHHRDS MKEFQVSYVT EELMQVFEHA DLRRKKSEKM GRREAAKEKK DVDKEAEEFI KFEHSKFSSS SPDSVSKATK KICPTIPHRK RDPVDQTWEV IQEGRRLTGG WKDFTTAHDL RIGDIVIFKH EGDMVFHVTP FGPNCCEIQY THPHIIKEEA DADDAPSFSF DYCFQAEVTA SNLKEDKLYL PEGATTCTAL NKQCQEIILV NKEGNPWTVS LRFSEADGMY YIRRGWRKFC RANRCAIGDL FVFNVVGDGK TTPLMCVCPE REE // ID M4D7T5_BRARP Unreviewed; 249 AA. AC M4D7T5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra012545.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra012545.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra012545.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012545.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra012545.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012545.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra012545.1; Bra012545.1-P; Bra012545. DR Gramene; Bra012545.1; Bra012545.1-P; Bra012545. DR InParanoid; M4D7T5; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 28414 MW; 324E598DD4A17B44 CRC64; METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDK IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GSIASTSRN // ID M4D7T7_BRARP Unreviewed; 328 AA. AC M4D7T7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra012547.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra012547.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra012547.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012547.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra012547.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra012547.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra012547.1-P; -. DR EnsemblPlants; Bra012547.1; Bra012547.1-P; Bra012547. DR Gramene; Bra012547.1; Bra012547.1-P; Bra012547. DR InParanoid; M4D7T7; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.90.1110.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR007642; RNA_pol_Rpb2_2. DR Pfam; PF02362; B3; 2. DR Pfam; PF04561; RNA_pol_Rpb2_2; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 328 AA; 37555 MW; CE23D17E96A37673 CRC64; MLTMEICERR YAKDILRKEM LPHEGVGESC ESHKAYVFGY IINRLLRCAL GRKPEDDRDH YGNKRLDLAG PLLGGLFRMM ETPREPHFFK PLLPGFHSGV AIPLDFYSKH IQGAEINKPW KLRSDASDQI WEVIREGRTL TKGWKEFTEA HDLRIGDIVI FKHEGDMVFH VTPFGPSCCD IQYTHPHIVK EEADADDAPT FSYDYCFLAE VTPTNQKDDK MFLPVEAMRC GALNQQCKEV KLVNKEGKSW TARFGFSESD GAYYISRGWR KFCRDNRCTN GDLFVFNVVG DGTTTPLLCV CPERKECTEL LRTKDHILDG SIASTSRN // ID M4D9T8_BRARP Unreviewed; 717 AA. AC M4D9T8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra013248.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra013248.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra013248.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra013248.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra013248.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra013248.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra013248.1-P; -. DR EnsemblPlants; Bra013248.1; Bra013248.1-P; Bra013248. DR Gramene; Bra013248.1; Bra013248.1-P; Bra013248. DR InParanoid; M4D9T8; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 569 671 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 569 671 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 717 AA; 78890 MW; 36D046BE178AB844 CRC64; MKTLHVAANG GDLAEGCGIL AGDADEAVLM DGMGEVGREI WSLDDHGGDG HGHREDDDII VHHDPSMFYG DLPTLPDFPC MSSSSSSSTS PAPLNAIVSS ASSSSAASSS TSSAASWAIL KSDGEDPTPN QNQYASGNCD VESSAALQST ASMEIQLDNT QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFNQD EDTQNLNLMD QTLEREDKIV VPMLENNNNN NSGGDMQVMN PSLEQEDDLA AVFLEWLKNN KETVSADDLR KVKIKKATIE SAAKRLGGGK EAMKQLLKLI LEWVQTNHLQ RRRTTNNNNN LSYQQDPFQN PNLIPPSDQT CFSPSTWVPP PTQPPPPQQP AFVSDPGYGY MPAPNYPPQE YLPLLESPPT WPPPQSGPMP LQQFTMPNPQ YTPFQDPGGG FTGYNMNPYQ YPYLPSSGQM RDQGLLRLCS SATKEARKKR MARQRRFLSH HHRHNNNNNQ QNQTQIGEVC GAVDPQLNHV PTTATGGTWM YWPNVPAMPP PVSSSQLPAM ETQLPTMDRA GSSSVMPRQQ VVPDRRQGWK PEKNLRFLLQ KVLKQSDVGN LGRIVLPKKE AETHLPELEA RDGISLAMED IGTSRVWNLR YRFWPNNKSR MYLLENTGDF VKTNGLQEGD FIVIYSDVKC GKYLIRGVKV RQPAGQKPEA PSSSAAVTKR QSKSQRSINN NSPSANIVAS PTSQAVK // ID M4DAM5_BRARP Unreviewed; 699 AA. AC M4DAM5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra013535.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra013535.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra013535.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra013535.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra013535.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra013535.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra013535.1-P; -. DR EnsemblPlants; Bra013535.1; Bra013535.1-P; Bra013535. DR Gramene; Bra013535.1; Bra013535.1-P; Bra013535. DR InParanoid; M4DAM5; -. DR OrthoDB; EOG0936054P; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 418 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 317 418 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 78082 MW; 4DC7E9A0F7CECED6 CRC64; MTPSSYSARF CFNRECPDFN RECYRPGWRL RNGDFADLCN RCATAYEQGR FCDIFHQRAS GWRCCESCGK RIHCGCVVSA PAFTLLDAGG IECLTCARKK VSVSPIADKF QDLSIDWNSS TRSYRPPNLS GPSILQSDLH NRGDCYEFNQ PTSKDKATAY STEKHRGMND LMGRLMSVNS NNHTNSILYN QKAGPNCKVP TCPNVNAYPP LISLKEGPLG AQRAFPVTTP VETNGHLGLG GRYLWHKDNS SPLSHLHNDV NRGADSPLES KNWNFGIHLD TPGKYQVVPR YSPKIPYKNQ VLQNLSNESV SVVTPLFEKI LSVSDAGRVG RMVLPKKCAE AFLPQISQTD GVPLTVHDST GKEWTFQFRF WVNNNSRMYF LEGITPCIQS MQLQAGDTVI FSRVDPEKKL IMGFRKASVA QSSVQETELN NNRESCTNGD AEPIDIHPPN GKKKSSMTTT RSKRQKVEKG ELSEVKLTWE EAQGFILPPP NLTPSIITIE GIEFEEYEDA PIIGKPNTGF GSTCSANGRL LAEQDDEEAK DEAEGLLMSP KSSSKHPRHR NGCTCIVCLQ SPSGSSPKHG RRCSCTVCDT VRRRRETLLQ RKKKQQQIEV ENKTHKELES PNSDEERHQS ANNSGTTSKD HEPSKAQIDL NFQPEKDEES PPPRSKTTTK DKSLHHDEAS FKPPRSSSSA HNKLHVESF // ID M4DB88_BRARP Unreviewed; 602 AA. AC M4DB88; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra013748.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra013748.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra013748.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra013748.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra013748.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra013748.1-P; -. DR EnsemblPlants; Bra013748.1; Bra013748.1-P; Bra013748. DR Gramene; Bra013748.1; Bra013748.1-P; Bra013748. DR InParanoid; M4DB88; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 490 590 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 106 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 602 AA; 68280 MW; E12394A2394C3457 CRC64; MYEELWKLSA GPLVDVPQAE ERVYYFPQGH MEQLEASTQQ DLNTMKPLFD LPPKILCRVM NVRLQAEKDT DEVYAQIMLM PEGTVDEPMS PDPSPPELQK PKFHSFTKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYKWKFKH IFRGQPRRHL LTTGWSTFVT SKKLVAGDTF VFLRGENGEL RVGVRRANRQ QSSMPSSVIS SHSMHLGVLA TACHATQTRS MFTVYYKPRT SQFIISVNKY LEAMNSKFSV GMRFKMRFEG DDSPERRFSG TVVGVQDCSP HWKDSKWRSL IVNWDEPASF TRPDKVSPWE MEPFAASENV PQSVNKRARH VNEISALGVP SSNFWSSALT QSHEFAQSCI TSQRNPPQNS DWPVSPYSTL NGQMVFPVEQ KKPETTTASC RLFGIDLMSS SLPAHEEKTA PMRPINITKP TLDSNADPKS EISKLSEEKK QEPAQASPKE VQSKQINSSR SRTKVQMQGV PVGRAVDLTL INGYVELIDD LEKLFDIEGE LKSRNQWEIV FTDDEGDMML VGDDPWPEFC NMVKRIFIWS KEEVKKMTPG NQLRILLTEV DTTISKTENY SN // ID M4DCH7_BRARP Unreviewed; 212 AA. AC M4DCH7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra014191.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra014191.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra014191.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014191.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra014191.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014191.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra014191.1-P; -. DR EnsemblPlants; Bra014191.1; Bra014191.1-P; Bra014191. DR Gramene; Bra014191.1; Bra014191.1-P; Bra014191. DR InParanoid; M4DCH7; -. DR OrthoDB; EOG09360SPH; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 122 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 212 AA; 23846 MW; 68D9DD94A54B3475 CRC64; MNTTRRASAR ITSAASQRRQ KPEPEPAVKK FIKVILPSTI KEKMMKIPAR FVRLGPKLTD TVTIQTPVGF KRSIGIKRTG NEVWVDNGCS EFAEAHSISE GHFLYFCSEG NSSFRVMIFD VSASEIDYPM DKVHVIESDD DEVMEVMDTD DGEGFTRVDS SDNDSSDEEA IDLEKLLKKK PRVNVKFETI NIGNVSRLKL KSCGFFSFFS CV // ID M4DCH8_BRARP Unreviewed; 213 AA. AC M4DCH8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra014192.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra014192.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra014192.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014192.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra014192.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014192.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra014192.1-P; -. DR EnsemblPlants; Bra014192.1; Bra014192.1-P; Bra014192. DR Gramene; Bra014192.1; Bra014192.1-P; Bra014192. DR InParanoid; M4DCH8; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 213 AA; 24381 MW; 5F84A4874FE79648 CRC64; MDSTHSEFNK RARLFEDHQN KDAKVIHPMI PESTTPLDKG YDASTTTQNL FNESKPEVAT PKVLKKRGRK KKNPNPEEVN SSTPRGDDSE NRSKFYESAS ARMRTVTAEE RERAITAAKA YEPTNPFFRV VLRPSYLYRG CIMYLPSGFA EKYLSGISGF IKIQLGEKQW PVRCLYKAGR AKFSQGWYEF TLENNIGEGD VCVFELLSTR DLF // ID M4DCR5_BRARP Unreviewed; 339 AA. AC M4DCR5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra014282.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra014282.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra014282.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014282.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra014282.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014282.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra014282.1-P; -. DR EnsemblPlants; Bra014282.1; Bra014282.1-P; Bra014282. DR Gramene; Bra014282.1; Bra014282.1-P; Bra014282. DR InParanoid; M4DCR5; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 339 AA; 39190 MW; DEEBE5ACBCCC0301 CRC64; MVILHEISNE AKTTTEASGS SNSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW GAQIYADHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG KLNRLVIPKK YAVKHLPFIS DDQEEGEAVE DVEVVFYDST MRQWKFRYCY WRSSQSFVFT RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH NRSEGEMKTE NFFNSKLEDE ETKQEEKKGG FMLFGVRIQ // ID M4DD47_BRARP Unreviewed; 320 AA. AC M4DD47; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra014415.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra014415.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra014415.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014415.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra014415.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra014415.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra014415.1; Bra014415.1-P; Bra014415. DR Gramene; Bra014415.1; Bra014415.1-P; Bra014415. DR InParanoid; M4DD47; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36493 MW; D2F0DCCEB9EC54B0 CRC64; MERKSNDLER SENIDSQNKK MNLEEERPVQ EASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGAMFPR FYSYPYPQIQ ASYERHNLYH RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHVATM ASSRGEKRLR LFGVDMECVR GGRGGGGSVN STEEESSTSG GSISRGGVSM AGVGSPLQLR LVSSDGDDQS LVARGAARVD EDHHLFTKKG KSSLSFDLDK // ID M4DFV1_BRARP Unreviewed; 431 AA. AC M4DFV1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra015374.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra015374.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra015374.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra015374.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra015374.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra015374.1; Bra015374.1-P; Bra015374. DR Gramene; Bra015374.1; Bra015374.1-P; Bra015374. DR OrthoDB; EOG09360BHX; -. DR Proteomes; UP000011750; Chromosome A10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF50249; SSF50249; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 129 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 431 AA; 47917 MW; D93C2AB58955261A CRC64; MKSSSESSVS GVSSAEPEVT VDEPMSPDPS PPESQRPKVH SFSKVLTASD TSTHGGFSVL RKHATECLSP LDMTQQTPTQ ELVAEDVHAY QWKFKHIFRG WSTFVTAKRL VARDTFVFLR TSQFIISLNK YLEAMSNKFA VGIRFKMRFE GEDSPERRFS GTVVGVKDCS THWKDSNWRC LEVRWDEPAS ISRPDKVSPW EIEAFVTSEN VPHSVMPKNK RPRHFSEVSA LDVGKTASNL WGSALAQSHE LAQSCITSQR NSPQQCALTL SSLSSSRVFL DLDVQPTRDY LTWLGSNSDV TNRVNPDNVT KAETVSWFEC TTTIDDVVHG SAWYYISCGG CKTKVTKGPT MLMCKKCVKV EVAGVSEYLT KLSVYDNNDH GFFVLLGDAG REWTGKPASA LVESYFEANE SVGVDHIVPV PQALIYTIGQ T // ID M4DIR8_BRARP Unreviewed; 319 AA. AC M4DIR8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra016395.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra016395.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016395.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra016395.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016395.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra016395.1; Bra016395.1-P; Bra016395. DR Gramene; Bra016395.1; Bra016395.1-P; Bra016395. DR InParanoid; M4DIR8; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 181 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 181 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 319 AA; 36160 MW; D558AEC993E27AA8 CRC64; MSRKPSDFEM VTGSPALGSA YYIPQGHAQY CNTSEDTVSV CRYMPPYLCN VAYKNCFGDN TTDELFTTVC LSPCTTHQNN FTDHSPHGFF RLSKLLEPPN LTEMCFPAAL VPPRSDILRL SDVERKEWQM KLVFDVETGE YTVGEEWASF VRAKDLRAGD TVVFVSVLGS AITLFATSRA HSQSKVRHSI NLDAFSKAIG GLMQSKPVEL TYSPMDPHSD FLVSPRVYRD SLLVVWMRGM RVKKVREYDD DHHVGTITST TFGNSDVHGV MRSLWRCHTV VWDAPYGFDR IHFSPWELTP SQEQPQPQPQ PPRTLHLFP // ID M4DJ15_BRARP Unreviewed; 836 AA. AC M4DJ15; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra016492.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra016492.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016492.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra016492.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016492.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra016492.1-P; -. DR EnsemblPlants; Bra016492.1; Bra016492.1-P; Bra016492. DR Gramene; Bra016492.1; Bra016492.1-P; Bra016492. DR InParanoid; M4DJ15; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 730 814 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 836 AA; 92824 MW; E60F6B303461CEF0 CRC64; MKTNGLVNGG TTTSTTSQST LLEEMKLLKD QSGTRKPVIN SMLWHACAGP LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVLPV PDLGLLRGSK HPSEYFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFFNPRA CPAEFVIPLP KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGENDWGSLI KRPLPYATFP NMASEQLMKM MMRPHNNQNA VTSFMPEMQQ NVLMGHGGLL GDVKMQQPMV MNQVVQVQPD NNNPSVSNTS GQEQNLSQSM NAPTNLENSS GRVNHGNEEL SEKPSALSPL QADPSPEQIY PPQQSDPTNG FSFLETEEMT SQVSSFQSLA GSYKQPLMLS SNESSPIVLP DSTNSFQDMW DNQLNGLKFD QFSPLMQQED LYGCQNMCMS NSTNSNILDP PPLSNTVLDD FCAIKETEFH SLVGNNNSFA QDVQSQITSA SFADSQAFSR QDNSGGTGGT SSSNVDFDDT SLLQQNSKGS WQKLATPRVR TYTKVQKTGS VGRSIDVTSF RDYEELKTAI ECMFGLEGLL TRPKTSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIRIL SPTEVQQMSE EGMKLLNSAC INDLKT // ID M4DJ39_BRARP Unreviewed; 1010 AA. AC M4DJ39; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra016517.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra016517.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016517.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra016517.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016517.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra016517.1-P; -. DR PRIDE; M4DJ39; -. DR EnsemblPlants; Bra016517.1; Bra016517.1-P; Bra016517. DR Gramene; Bra016517.1; Bra016517.1-P; Bra016517. DR InParanoid; M4DJ39; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 882 975 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1010 AA; 111356 MW; 1F35278E9833470D CRC64; MKAPSNGFHP SSAEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGWSVFVS TKRLIAGDSV LFVRDEKSQL TLGLRLANRQ TPTLSSSVIS SDSMHIGILA AAAHANANNS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS VWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNTLSA GAAATTQLPS AYNLPKNFAL NDPSKLLNFQ SPNLSPVNSQ FNKPNMVSSH ISQQMQVQPA MVKSQQQVQI SHQQLQQGVY NAGSVNNGVS VVSCQNQSTG FSQSQLQQQS MLSNGSAKMN HQSIVGNKSS SQMTSQELQF QQQMELHNSS QLLRTQQEQS SMHSLQQTPQ QLQMQQQSST PSPSQQLQLQ LLQKLQQQQQ STPPVSSSLQ PQLSAALQQT QSHQLQQLLS SQNQQPFSAP TFMQPPQVQV SHHQQQGHMN NKPLITAGGS HSGHTDGEVP TCSTSPSANN TRHDNVSPTN FLSRSQQQGQ AASVPAPDPV QSRNNQGMVN LRSAADQINV STAGTTYCPD AVGTAQQQQT FPLQSFGNCQ QRNNLAFAGN LEAVTTPDAL YSQKEFQNLV PNYGNAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNDSGIMNG GGLWPNQAQR MRTYTKVQKR GSVGRSIDVT RYSGYDELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATNQVCSETD SGNAWKVHYE DTSAAASFNR // ID M4DJU4_BRARP Unreviewed; 251 AA. AC M4DJU4; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra016772.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra016772.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra016772.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016772.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra016772.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016772.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra016772.1; Bra016772.1-P; Bra016772. DR Gramene; Bra016772.1; Bra016772.1-P; Bra016772. DR InParanoid; M4DJU4; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 28600 MW; 83AA1E628E46CBCF CRC64; MVQPQEPHFF QPLLPGFQTH LTIPIVFFSK HIQGKTNGNT WTLTSDAMDQ TWQVIQEERR LTRGWKEFAE AHDLRIGDIV IFKLKGSMVF HVTPFGPSCC DIQYTYPNSM EEAHDHQNNR TGARFSYSWD YCFKAEVTDS NVREDKLNLP VGATGCNALN KECKKAKLVN IEGKAWNVSM RFNESGGFYY IKGWRKFCAE NKCHIGDSFV FNVVGDGNTL PLMCVCSPSK ECLKSAGFMF YKIKMESNGS T // ID M4DL81_BRARP Unreviewed; 245 AA. AC M4DL81; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra017262.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra017262.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra017262.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017262.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra017262.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017262.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra017262.1-P; -. DR EnsemblPlants; Bra017262.1; Bra017262.1-P; Bra017262. DR Gramene; Bra017262.1; Bra017262.1-P; Bra017262. DR InParanoid; M4DL81; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 245 AA; 28403 MW; 561B5E189433291A CRC64; MSINQYSSEF YYHSLMWQQQ QQHHHQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE RYFPLAAAAV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG DVVLFHRHRA DGGRFFIGWR RRGDSSSSSD SYRNLQSNSS LQYYPHAGAQ AVENQRGNSK TLRLFGVNME CQIDSDWSEP STPDGFTTCP TNHDQFPIYP EHFPPPYYMD VSFTGDVHQT SSQQG // ID M4DMB6_BRARP Unreviewed; 186 AA. AC M4DMB6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra017648.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra017648.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra017648.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017648.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra017648.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017648.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra017648.1; Bra017648.1-P; Bra017648. DR Gramene; Bra017648.1; Bra017648.1-P; Bra017648. DR InParanoid; M4DMB6; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 186 AA; 20561 MW; 22D3816505B181CC CRC64; MAEDDTPPRF FKVFISHHSS DSMLIPISYT HELPRILPKT AILQGTGGCF WKVEMKRKRD EVYFGKGWTK FVTDNSLNDG DFLTFVYNGA NVFEVSIYGL GGCKEMRAVT EVEEVKEDSV VSLSSTDSDT SSESVVANTI SKNKGKSQVV EDEDESEEAE AETCSESTVA KTTTGSRNKG LTLFIN // ID M4DMB7_BRARP Unreviewed; 132 AA. AC M4DMB7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra017649.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra017649.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra017649.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017649.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra017649.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017649.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra017649.1; Bra017649.1-P; Bra017649. DR Gramene; Bra017649.1; Bra017649.1-P; Bra017649. DR InParanoid; M4DMB7; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 47 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 47 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 132 AA; 14433 MW; 03AC42587667B607 CRC64; MKRKRDEVYF GKGWTKFVTD NSLNDGDFLT FVYNGANVFE VSIYGLGGCK EMRAVTEVEE VKEDSVVSLS STDSDTSSES VVANTISKNK GKSQVVEDED ESEEAEAETC SESTVAKTTT GSRNKGLTLF IN // ID M4DMB8_BRARP Unreviewed; 352 AA. AC M4DMB8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra017651.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra017651.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra017651.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017651.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra017651.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017651.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra017651.1-P; -. DR EnsemblPlants; Bra017651.1; Bra017651.1-P; Bra017651. DR Gramene; Bra017651.1; Bra017651.1-P; Bra017651. DR InParanoid; M4DMB8; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 40035 MW; 28753FA05390EED8 CRC64; MAEDDTPPRF FKVFISHHSS DSMLIPISYT HELPRILPKT AILQGTGGCF WKVEMKRKRD EVYFGKGWTK FVTDNSLNDG DFLTFVYNGA NVFEVSIYGL GGCKEMRAVT EVEEVKEDSV VSLSSTDSDT SSESVVANTI SKNKGKSQVV EDEDESEEAE AETCSESTVA KTTTGSRNKG KKKEKVVESS NEDSDSDYTE ANEDSDSDDT EVSGDLYAFS ESSNTVAQPK KKRERVTIKK IKDPEKYLVD PKNVFFETNV KNRPYELLVS AQLVKDYDLK FKKLVYYTDY HKDGKLQAKT TKWKDNRVCI KKWNRICKRN KLKKGDGILC ELKRKEGFVY AVIIHIVREK DL // ID M4DMF9_BRARP Unreviewed; 257 AA. AC M4DMF9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra017692.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra017692.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra017692.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017692.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra017692.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra017692.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra017692.1; Bra017692.1-P; Bra017692. DR Gramene; Bra017692.1; Bra017692.1-P; Bra017692. DR InParanoid; M4DMF9; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 86 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 219 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 86 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 219 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 28644 MW; 42EBAF7A22FA81AD CRC64; MFGDHDYQAI PKSFNAHLQD PLPQTAKLQG IGGGVWTVSF KKIRGVAYFT SGWSKFAEDH ELKHGEFLTF VYDGSHTFEV SVFGRSECKE IRAVVETVNL SDANSDEEEE EDSSVVAADS NEGDDPSFHA GEDDEVSQSI NPVDSDDTVS VAEGFPNLEV ESNPCFTTTL KKRIYDVLIP AAVVKEHGLT FCDRIKYIDG EGILDGAILN CSYYGISFKG WGRICRRNRL KENDTVHCEM LHIRKKVHSI KITITRG // ID M4DP72_BRARP Unreviewed; 790 AA. AC M4DP72; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra018313.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra018313.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra018313.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018313.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra018313.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018313.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra018313.1-P; -. DR EnsemblPlants; Bra018313.1; Bra018313.1-P; Bra018313. DR Gramene; Bra018313.1; Bra018313.1-P; Bra018313. DR InParanoid; M4DP72; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 294 395 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 592 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 294 395 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 790 AA; 85947 MW; 79CA4DC1291EE2C5 CRC64; MGSKVCMNAS CGSTSSVEWK KGWPLRSGAL ADLCFRCGSA YETSRFCETF HMEQSGWREC YLCNKRLHCG CIASKLVVEF MDYGGVGCST CTNSHSKRGE NPGVFSRLPM NMQQTNGESG MSIDGVVRSE ANLFSQPLVS GDDKREEFTP HRGFGNLMKQ DNNVTTTGYT HESSSSSPAQ PSLNMALATL PYSPSFATPV VDGNKLMGAG GGGVASSQSR LFQCSASSIL QKPSKSVLGT PPPGTSKSAQ ARIGRPPVEG RGKGHLLPRY WPKYTDKELQ QISGNLNLNI VPLFEKTLSA SDAGRIGRLV LPKACAEAYF PPISQSEGIP LKVQDVRGKE WTFQFRFWPN NNSRMYVLEG VTPCIQSMRL QAGDTVTFSR VDPGGKLIMG ARKATYTVDM QGCGFANGAS NEDTSSSGVT ENLTSINAPS CPSQMLEGLP EHLGSPHGGN GVKKSEINGG DDQSRGKEKK RTRTLGAKNK RLLLHSEESM ELRVTWEEAQ ELLRPSANAK PTVVVIEEHE FEEFEEPPVF GKRTIVVTSR PSGEQERWGS CDDCSKWRRL PVDALLPAKW TCSDNVWDSS RCSCSAPEES LKELENVLRA GKEYKKRRIG VSQTARNEQE PSGLDALASA AVLGDALDES EVATTTRHPR HRVGCSCIVC IQPPSGKGRH KPTCGCTVCS TVKRRFKTLM MRRKKKQLEC DGTAAVDEEN KEGVEPEKNE GEKEGRIDLN SDPYNREDAE AVAVEKREES KKSEGGVSWG VSQGGGVLGE TEVGGGEAEK TTSEEQKVTS // ID M4DPI9_BRARP Unreviewed; 291 AA. AC M4DPI9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra018430.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra018430.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra018430.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018430.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra018430.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018430.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra018430.1; Bra018430.1-P; Bra018430. DR Gramene; Bra018430.1; Bra018430.1-P; Bra018430. DR InParanoid; M4DPI9; -. DR OrthoDB; EOG09360YHN; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 190 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 190 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 33470 MW; E12CDFCB5BDFD163 CRC64; MMFPKEREIG SSSGLGQGEV NVEKLSFFKI FQGEDLSSES MRAFPYDFIR NVPQNDYSSN MVIRTQWGVS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTG LMCFNVNIYE ENGKELVRPR TMASLSGIKK EVGESSKKDV KKAEETGGVR VKSKRFEEGK TSKKKKKKKM KKSNNDEDTV PVFNITITTS YLKFLPIPRY FADVHIPNKS KMVVTIHHSN GNCSWEVVCL VRKARAIFSG GWARLVREYP LSVGDFCTFK FIKPTEFHLD VSKKVEEIMS D // ID M4DPT9_BRARP Unreviewed; 441 AA. AC M4DPT9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra018530.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra018530.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra018530.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018530.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra018530.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018530.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra018530.1; Bra018530.1-P; Bra018530. DR Gramene; Bra018530.1; Bra018530.1-P; Bra018530. DR InParanoid; M4DPT9; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 441 AA; 49944 MW; 3F3C3CF5BC8B6441 CRC64; MASTDSLPRF FKVFISHFSS DSMLIPISYY DELPRHLPKT VILQGTGGCL WKVAMRLKQE EEEVYLEQGW PKFVKDNALV DGDFMTFVYN GDNIFEVSIY GLDGCKQARA MAEEEEGEDS ICALSSDDTE DTNAESESAN TVQRSNDKGK AKVEADDEEE EEEEDSVYSL SNSKDTDTGT SSEFEMANTI LRSKTKGKSK EEVIKEESDG KEDSDHSLNS EVKETDTGSE SKIPKNKGKK KKEVVESSDS DYAEEFGRLD LDLEEDSTSS DSSYAPDSDE DTATHVKRKV VTKGSQGKSK VIKDVSEVGD TSCAVERVPK TREKVKAIIE NPEVYLDDPT NIHFETGVKN RKYELLVHAQ LVKDYCLRFK DYIYYLDPKG KLEAKTAKWK DQRVCIKKWV KICDRNKLKK QDRVVCELLR NKDLVYAVKI HIIRGKHLVS V // ID M4DQR1_BRARP Unreviewed; 340 AA. AC M4DQR1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra018854.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra018854.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra018854.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018854.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra018854.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018854.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra018854.1; Bra018854.1-P; Bra018854. DR Gramene; Bra018854.1; Bra018854.1-P; Bra018854. DR InParanoid; M4DQR1; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 108 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 108 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 39371 MW; 5C6B56F854FCC5B6 CRC64; MFLVSSAIPM DVAKSETLNT NDSYLPVKKR MRLNEPPTTD KALVSASDKT KYKGVVQHQN GHWGAQIYVD HKRIWLGTFK SAAEAAMSYD SASIKLRAFD ANSQRNFPWS DLTVHEPVFQ KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ IASKQNRRDE ESNKCFSCTQ LFQKELTASD VGKLNRLVIP KKYAVKYLPF ISEREEGEIV EDVEVVFYDR EMRPWKFRYC YWTSSQSFVF TRGWIGFVKE KRLKEKDLIT FYTCDVPTLE GQSKKFLMID VRYFSDNNSA VTDEEVNKTV HNNSFDDVMK PEINSKLGGE EEAKPEENKG GFMLFGVRIQ // ID M4DQS5_BRARP Unreviewed; 338 AA. AC M4DQS5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra018868.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra018868.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra018868.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018868.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra018868.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018868.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra018868.1; Bra018868.1-P; Bra018868. DR Gramene; Bra018868.1; Bra018868.1-P; Bra018868. DR InParanoid; M4DQS5; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 102 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 102 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38712 MW; 68727C3674547813 CRC64; MNTEDAKTES PTVSSGCFLP LKKRMKLHNN PPNNALEVVV SGSAKYKGVV QLPNGHWGAQ IYTDHKRIWL GTFRSAAVAA AAYDSASIKI RSYDANMHRN FPWSEYTVHE PAFQNEHTTE AVLSMIKDGT YQRKYREFLK KVQSKIVGGY NMVGSKQDQE SKKGFSCTEL FRKELTPSDV GKLNRLVIPK KYAVRYLPLL RDDQKEREEG EIVEDVEVVF YDRGMRQWKF RYCYWRSSQS FVFTSGWNGF VKEKSLKEKD AIVFYTCDVP TLEGQRKKFL MIDVHCSSDE GSAVCDEEVN ETGGVKTENF SNSKLEEEEE TKSVENKGGF MLFGVRIQ // ID M4DQS6_BRARP Unreviewed; 334 AA. AC M4DQS6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra018869.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra018869.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra018869.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018869.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra018869.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018869.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra018869.1; Bra018869.1-P; Bra018869. DR Gramene; Bra018869.1; Bra018869.1-P; Bra018869. DR InParanoid; M4DQS6; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 105 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 281 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 105 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 281 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 38697 MW; 7227F9C066406730 CRC64; MDVSKSKASN TSDSYLPPKK RMRLSEPPTE AALVSAAIKK GSFSDNIKYK GVVQQPNSRW GAQIYVDHKR IWLGTFSSAV KAAMAFDSAS IKLRSFDTNS ERNFPWSDLT VQEPVFQNGY TREAVLNMIK DGSYQREFID FLKNRSQAVV GLKQNRRDEE PNKCFSSRQL FQKELTASDV GRLNRLVIPK KYAVKYLPFI SEREEGEIID DVEVVFYDRE MRPWKFRYCY WTSSQSFVFT RGWIGFVREK RLKEKDVITF YTCDVPTLEG QSRKFSMIDI HRFSDNDSVV TDEEVNKTVH DVSDDVMKPE KFFNSKLGEG ENRGGFMLFG VRIQ // ID M4DQV1_BRARP Unreviewed; 338 AA. AC M4DQV1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra018894.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra018894.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra018894.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018894.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra018894.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra018894.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra018894.1; Bra018894.1-P; Bra018894. DR Gramene; Bra018894.1; Bra018894.1-P; Bra018894. DR InParanoid; M4DQV1; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 101 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 176 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 101 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 176 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38494 MW; 91E26C4D2B0D8F22 CRC64; MNSLNEAKTM TETSGSSNSV LCLANPMEQP HVSTTTRSVL SNTKYKGVVQ QPNGHWGAQI YSEHRRIWLG TFKSAAEAAA SYDSASIKLR GIDANSYRNF PWCEITTHEP AFQANYTTEA VLNMIKDCSY QHKFMEYLRR RSQLVDFANI NIVAAASKQS RGGRGVQEPF SCTPLFSKEL TPSDVGKLNR LVIPKKHAVK HLPFISDGQK EREEGEIGGA LDDVEVVFYD RAMRQWKFRY CYWRSSQSFV FTRGWNGFVR EKRLKEKDAI VFYHCDVPTN VMTLQGQNNS FLMIDVDYFT DKGPVAPKEV DKMVHNTSEE EMKTETKGGF MLFGVRIQ // ID M4DRW2_BRARP Unreviewed; 623 AA. AC M4DRW2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra019255.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra019255.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra019255.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra019255.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra019255.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra019255.1-P; -. DR EnsemblPlants; Bra019255.1; Bra019255.1-P; Bra019255. DR Gramene; Bra019255.1; Bra019255.1-P; Bra019255. DR InParanoid; M4DRW2; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 507 599 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 623 AA; 70257 MW; BCF9276D7DFF58D5 CRC64; MYGELWKLCA GPVVDVPQAA ERVFYFPQGH MEQLEASTQQ DLNAVKPTKP LFDLPPKILC RVMDVRLQAE KDTDEVYAQI MLMPEGTVDE PMSPDPSPPE SQRPKVHSFS KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELV AEDVHGYQWK FKHIFRGQPR RHLLTTGWST FVTAKRLVAG DTFVFLRGEN GELRVGVRRA NRQQTNMPSS VISSHSMHLG VLATACHATQ TRSMFTVYYK PRTSQFIISL NKYLEAMSNK FSVGIRFKMR FEGEDSPERR LSGTVGGGKD CSTHWKDSNW RCLEVHWDEP ASISRPDKVS PWEIEPFVTS ENVPHSVMPK NKRPRHYSEV SALGKTASNL WSSALTQSHE FAQSCITSQR NSPQQCYRDA TEDAKNSDWS ASPYSATLNN QMVFPVEQKK PETTASYRLF GIDLLSSSIP ATEEKTAPTL PINITKPTPD SNSDPKSEVS KLSEEKKQEP AQASSKEVQS KEISSTRSRT KVQMQGVPVG RAVDLTVLNG YSELIDDLEK LFDIEGELKS RNQWEIVFTD DEGDMMLVGD DPWPEFCNMV KRIFIWSKEE VKKMTPGNQL RKLLTEVDTT LTTTISKTEN HSN // ID M4DTH8_BRARP Unreviewed; 341 AA. AC M4DTH8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra019821.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra019821.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra019821.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra019821.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra019821.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra019821.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra019821.1-P; -. DR EnsemblPlants; Bra019821.1; Bra019821.1-P; Bra019821. DR Gramene; Bra019821.1; Bra019821.1-P; Bra019821. DR InParanoid; M4DTH8; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 185 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 185 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38088 MW; FC18CDD50A429841 CRC64; MEVSSVDEST TSTGSICETP AMTSAKSSVN LHRMGSGSSV VLDSENGVEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VYRFRGRDAV TNFKEARLDD GEVEFLSSHS KAEIVDMLRK HTYSEELEQS KRRRNGNGNT ARTLTSSLNG DGVSTTEFRS AEALFEKAVT PSDVGKLNRL VIPKHHAEKH FPLPSSNVSV KGVLLNFEDV TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLLAGDVVS FSRSEGQDQQ LYIGWKSRSG PDVETGRVLR LFGVNISPES SRTEVVGSKR VNDTEMLSLV CSKKQRIFHA S // ID M4DV74_BRARP Unreviewed; 290 AA. AC M4DV74; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra020417.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra020417.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra020417.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020417.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra020417.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020417.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra020417.1-P; -. DR EnsemblPlants; Bra020417.1; Bra020417.1-P; Bra020417. DR Gramene; Bra020417.1; Bra020417.1-P; Bra020417. DR InParanoid; M4DV74; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 32862 MW; 42858BB2317505A1 CRC64; MVFTPYPDFL IIFNSKDVSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWTVKWAISQ EEEISFGDGW SKFIAENDPI DGDFLQFSYD GSRSFLVSIF RNGLPVKPTA PVTIQDISDD DEDKTAGDGD EKKEEEDYDQ NMIISLSLGS SDEDYDADKT VSEVNKADGT LKRGSSSQRI RAQSIGDPEM YLDDPKNPCF IATSSSCRRM LVIAMQVIKD YDLKFDGTIK FIDGFGELEG KIGNWKDRVV VYSWQEIYNR NHAKPGDVII CEILREGGVV RSIKAHFVKK // ID M4DVF7_BRARP Unreviewed; 271 AA. AC M4DVF7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra020501.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra020501.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra020501.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020501.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra020501.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020501.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra020501.1; Bra020501.1-P; Bra020501. DR Gramene; Bra020501.1; Bra020501.1-P; Bra020501. DR InParanoid; M4DVF7; -. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 31144 MW; 0FFAC2F77B34AC79 CRC64; MTLNGVLDLL QENVKKPRFC KSLPLGENWK SKSMRIIPEE FVRSAHGAFE HRLVFSVSWG NSWQVWLQRD KNGLFMEEED WDEFVDDNLL CPNDILLFTH EDTMFTEVRI YKKDYRFFKQ VITAPLPPQV LNPKPNAPSS APPGFAPFAS ASASRARQSS SPVQNPEQYL VNPQNPYFVK TLSKKIDVLY VNQEVIQRYG LKFGPHLSPV HYLLPGEKHE AVIKIYRNAP CFNRWAAICK KYNKKEGDSV VCELERSGGV VTAVRVHFVD E // ID M4DVR9_BRARP Unreviewed; 209 AA. AC M4DVR9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra020613.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra020613.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra020613.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020613.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra020613.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020613.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra020613.1; Bra020613.1-P; Bra020613. DR Gramene; Bra020613.1; Bra020613.1-P; Bra020613. DR InParanoid; M4DVR9; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 58 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 87 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 58 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 87 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 209 AA; 23494 MW; 4CE0AB161C6EA399 CRC64; MAISGFVSLN VRKGFAICGT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTATNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GSIASTSRN // ID M4DWH9_BRARP Unreviewed; 1304 AA. AC M4DWH9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000256|RuleBase:RU363031}; DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU363031}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra020873.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra020873.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020873.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra020873.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020873.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription CC of DNA into RNA using the four ribonucleoside triphosphates as CC substrates. {ECO:0000256|RuleBase:RU363031}. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). {ECO:0000256|RuleBase:RU363031}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326}. CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family. CC {ECO:0000256|RuleBase:RU363031}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra020873.1-P; -. DR EnsemblPlants; Bra020873.1; Bra020873.1-P; Bra020873. DR Gramene; Bra020873.1; Bra020873.1-P; Bra020873. DR InParanoid; M4DWH9; -. DR OrthoDB; EOG093600IR; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00653; RNA_pol_B_RPB2; 1. DR Gene3D; 2.40.270.10; -; 1. DR Gene3D; 3.90.1110.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR015712; DNA-dir_RNA_pol_su2. DR InterPro; IPR007120; DNA-dir_RNA_pol_su2_6. DR InterPro; IPR007121; RNA_pol_bsu_CS. DR InterPro; IPR007644; RNA_pol_bsu_protrusion. DR InterPro; IPR007642; RNA_pol_Rpb2_2. DR InterPro; IPR007645; RNA_pol_Rpb2_3. DR InterPro; IPR007646; RNA_pol_Rpb2_4. DR InterPro; IPR007647; RNA_pol_Rpb2_5. DR InterPro; IPR007641; RNA_pol_Rpb2_7. DR PANTHER; PTHR20856; PTHR20856; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF04563; RNA_pol_Rpb2_1; 1. DR Pfam; PF04561; RNA_pol_Rpb2_2; 1. DR Pfam; PF04565; RNA_pol_Rpb2_3; 1. DR Pfam; PF04566; RNA_pol_Rpb2_4; 1. DR Pfam; PF04567; RNA_pol_Rpb2_5; 1. DR Pfam; PF00562; RNA_pol_Rpb2_6; 1. DR Pfam; PF04560; RNA_pol_Rpb2_7; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS01166; RNA_POL_BETA; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326}; KW DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU363031}; KW Nucleotidyltransferase {ECO:0000256|RuleBase:RU363031}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU363031}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326}; KW Transferase {ECO:0000256|RuleBase:RU363031}. FT DOMAIN 410 502 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 410 502 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1304 AA; 147007 MW; 4A1493348B5C1B9A CRC64; MENTQDQPYI DHDEEITPED AWTVISAYFE EKGLVRQQLD SFDQFIQNTM QEIVDESSDI EIRSASQHNP GHQSDFAETI YNISFGQIYL SKPMMTESDG EMATLFPKAA RLRNLTYSAP LCVDVSKRVT KKGHDGVEVT ETQDFTQVFI GKVPIMLRST YCTLNGNSEK DLTELGECPF DQGGYFIING SEKVLIAQEK MSSNHVYVFK KRQPNKYLYV AEVRSMAEDQ NKPPSTMFVR MLSGSKGGSS GQFIRCTLPY IKKEIPIIIV FRALGFVADK DILERICYEF GDTQMMELLR PSLEEAFVIQ SQQVALDYIG KRGAPVGTPK EKRIKYAKDI LRKEMLPHEG VGESCESHKA YVFGYIINRL LRCALGRKPE DDRDHYGNKR LDLAGPLLGG LFRMMETPRE PHFFKPLLPG FQSGVAIPLD FYSKHIQGAE INKPWKLRSD ASDQIWEVIR EGRTLTKGWK EFTEAHDLRI GDIVIFKHEG DMVFHVTPFG PSCCDIQYTH PHIVKEEADA DDAPTFSYDY CFLAEVTPTN QKDDKMCVDN GKEVNLLFAI NAKTITSGLK YALATGNWGQ ANATGTRAGV SQVLNRLTYA STLSHLRRLN SPIGREGKLS KPRQLHNSQW GMMCPAETPE GQACGLVKNL ALMVYVTVGS AASPILAILS DLGTENLEES SPSVIPKATK IFVNGEWVGI HRDPDMLVKT LRLLRRSNGI NTEVSVVRDI RLKELRIYTD YGRCSRPLFI VDNQRLLIKK NDIYALQQRV SAEEDGWHQL LANGYIEYID TEEEETTMIS MTINDLVHSR LCPDEAYSDT YTHCEIHPSL ILGVCASIIP FPDHNQSPRN TYQSAMGKQA MGIYVTNYQF RMDTLAYVLY YPQKPLVTTR AMEHLHFRQL PAGINAIVAI SCYSGYNQED SVIMNQSSID RGFFRSLFFR SYRDEEKKMG TLIKEDFGRP DRGNTLGMRH GSYEKLDDDG LAPPGTRVSG EDVIIGKTTP ISQDEAQGQT SRYTRRDHSL SLRHSESGMV DQVLLTTNAD GLKFVKVRVR SVRIPQIGDK FSSRHGQKGT VGMTYTQDDM PWTIEGVTPD IIVNPHAIPS RMTIGQLIEC IMGKVAAQMG KEGDATPFTD VTVDNISKAL HECGYQMRGF ERMYNGHTGR PLPAMIFIGP TYYQRLKHMV DDKIHSRGRG PVQILTRQPA EGRSRDGGLR FGEMERDCMI AHGAASFLKE RLFDQSDAYR VHVCETCGLI AIANLKNNTF ECRGCKNTTD IVQVHIPYAC KLLFQELMSM AIAPRMLTKD VKSA // ID M4DWI0_BRARP Unreviewed; 309 AA. AC M4DWI0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra020874.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra020874.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra020874.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020874.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra020874.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra020874.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra020874.1; Bra020874.1-P; Bra020874. DR Gramene; Bra020874.1; Bra020874.1-P; Bra020874. DR InParanoid; M4DWI0; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 35450 MW; 595213BF10169A00 CRC64; MLTMEICERR YAKDILRKEM LPHEGVGESC ESHKAYVFGV SKSIEGFRLI DVNRHARFIR METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GSIASTSRN // ID M4DXM4_BRARP Unreviewed; 214 AA. AC M4DXM4; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra021270.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra021270.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra021270.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021270.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra021270.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021270.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra021270.1; Bra021270.1-P; Bra021270. DR Gramene; Bra021270.1; Bra021270.1-P; Bra021270. DR InParanoid; M4DXM4; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 143 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 143 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 24112 MW; 4CE4DD324601C584 CRC64; MANPHEPHFF KPLLPGFHSG VTIPLAFFSK HIEGKTNQKT WKLRSDASDQ TWEVIQEGRT LEGRILTGGW KNFTTAHDLQ IGDLVIFKHE GDMVFHVTPF GPSCCEIQYT HPHIIKEEAD AGDADDNEIR GTGAMSSFSF DYCFLAEVTA SNLKADKLYL PKRATSSTAL NKQCQEMILV NKEGNSWTAN LRFSESGGMY YITRGWGKFC RDNK // ID M4DXN8_BRARP Unreviewed; 283 AA. AC M4DXN8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra021284.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra021284.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra021284.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021284.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra021284.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021284.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra021284.1; Bra021284.1-P; Bra021284. DR Gramene; Bra021284.1; Bra021284.1-P; Bra021284. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 246 282 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 246 282 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 32648 MW; 2604942300A4E446 CRC64; MQFILTNPNL QNRSSFQETM LPESENRENL SSPSFIKSLS LGQNWKSKSM RIFPEEFVRS AGEAFVHRVV LCVLWNNSWQ CWLQQDKNGL FMVEEDWDEF VDDNLLDTDD ILLFTHQDTM YFQVRIFKKD GKEITSVPLE GEPETQPFHQ ETTPAYASAN GGTSSRARKG YAHVENPKRY LLNPRNPYFE KTLTKTNTVL YVNTWVIEEY DLEFSPPNTH MHFLLPDGET LDGYTKDYGG SHSFLGWAAV CERCNLRTGD TVVCELELSG RVVVAVRVHL LDE // ID M4DYN9_BRARP Unreviewed; 774 AA. AC M4DYN9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra021635.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra021635.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra021635.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021635.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra021635.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021635.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra021635.1; Bra021635.1-P; Bra021635. DR Gramene; Bra021635.1; Bra021635.1-P; Bra021635. DR InParanoid; M4DYN9; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 286 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 530 580 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 286 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 682 705 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 774 AA; 84752 MW; 6C45AEC208FA02A7 CRC64; MCMNASCGST STVEWKKGWP LRSGALADLC FRCGSAYETS LFCETFHLDQ SGWRECYLCN KRLHCGCIAS KLVVEFMDFG GVGCTTCTNC HQPNLNNRGE NPGLFSRLPM NRQHTNGESG MNVGKADLFS QPLVQGDDKR EEFMPHRGFS NLMKPDNATT TGYRHDANGT HESSPTPSQP PSLNMPMAAL PYSLNFATAT KKLMDAASQS HTVQSSASGI LQTPSKSVPG TPSGPGTSKS AQARIGRPPN EGRGRSHLLP RYWPKYTDKE LQQISGNLNL NIVPLFEKTL SASDAGRIGR LVLPKACAEA YFPPISQSEG IPLKIQDVRG KEWTFQFRFW PNNNSRMYVL EGVTPCIQSM MLQAGDTVTF SRVDPGGKLI MGFRKAAHTG VIQGCGLTNG TSNEDTSSSG VTETPTSVNA SSCPAQTPEE LKGLPEHLNS NHGGSSLKKS EVNGVKDKKR TRTVGAKHKR MLWRSEEAME VRITWEETQE LIRPSPSEKP TVVVIEEHEF EEFNEPPVFG KRTIVTSRPS GEQERWGSCD DCSKWRRLPV DALLPAKWTC SDNVWDESRC SCSAPEESLK ELENVLRMSK EYKKRRSGVS QTVRTEEELT GLDALASAAA LGDTLGEEEE PATTTRHPRH RVGCSCIVCI QPPSGKGRHN SSCLCTVCST VKRRFKTLMM RRKKKQLERE EIEAAVAAAA DQENKEDGKT GRIDLNSDPC NRGDVEAVGV EEKDESEKGE AGGCLGVAQA DDVVGVTELE GEGEKIGEES KGSS // ID M4DZJ6_BRARP Unreviewed; 292 AA. AC M4DZJ6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra021943.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra021943.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra021943.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021943.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra021943.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra021943.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra021943.1-P; -. DR EnsemblPlants; Bra021943.1; Bra021943.1-P; Bra021943. DR Gramene; Bra021943.1; Bra021943.1-P; Bra021943. DR InParanoid; M4DZJ6; -. DR OrthoDB; EOG09360JYT; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 189 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 189 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 33248 MW; 2817F1229003F2F3 CRC64; MDMNNWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEIVR PPTMASSSGI KQEQGASMEG VEFEATDKKA EESKKKIKIK NVVNSVEIGE SSRGVKKVKR GRVRVKNGVP EFEITIKRSG LGHVTIPNLF KKQIPNEQTM FTIHSKGSGG GSWEVWCLVR EAQATFSRGW SKLAREYPLE IGDKCTLQLI KPNECVLTIT NKAKEEEITV ID // ID M4E092_BRARP Unreviewed; 278 AA. AC M4E092; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra022189.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra022189.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra022189.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022189.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra022189.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022189.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra022189.1; Bra022189.1-P; Bra022189. DR Gramene; Bra022189.1; Bra022189.1-P; Bra022189. DR InParanoid; M4E092; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 74 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 177 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 74 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 177 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 32226 MW; 19F13E9B06C6D98C CRC64; MQNLSKEDFS YKMVIRAEWG SSWEVDVSKN PRFYYVEKSG WNQFVSDNAL GDNEFITFTH KGSMSFNVNI YGKNGKEIVT PRKPLTATPL SGVKKEEGER SYKDVKKEEE TCESMDGVEV EETTKKAYKT SKKKKKKKSK KVVTHVEVGE SSRGRKKKAE KLKTLKKKKI KTVKKGVPEF EITIRKSYLK FLLLPRVFEE EHIPGESMEY TIHHSEMKCS WNVLCLVREN RTVFSSGWSR LAREFPLKVG DRCTFKLIKP TEFVLITKKS RKEITVIG // ID M4E0G6_BRARP Unreviewed; 390 AA. AC M4E0G6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra022263.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra022263.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra022263.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022263.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra022263.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022263.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra022263.1; Bra022263.1-P; Bra022263. DR Gramene; Bra022263.1; Bra022263.1-P; Bra022263. DR OrthoDB; EOG09360KTU; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 226 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 354 390 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 226 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 354 390 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 390 AA; 44187 MW; 94FC55DC61457226 CRC64; MKRKKLPEGE EIHQTQSKKS SFSKSLSPGQ NWKSKSMRII PEEILRSNPE AFEHRVVFTA PWNNSWQLWL QGDKNCLFMI KEDWNEFVDD NLLASDDTLR FTHQGTMYFQ VRIFKKDGKE ILSAPLEVEP PHNSHQEPTT VSASGGGRQS FAHVGNPERY LLNPNNPYFE KTLTKTNTAL YVSSPVVKKY ELEFGPRNSS MHFLLPDGNK LEGFNKIYSG LHAFLGWANV CQKYNLKQGD TVVCEFELSG RVVIAVRVHF ATASNSASGR QTSRGRESFD HVESPERYLF NPNNPYFEKT LTKTNSVLYV SPPVIKKYGL EFGPHSSSID FLLPDGSKME GFTKSYGGLY GFLGWAAVCQ KYNLKPGDSV VCEFELSRGV VSAVRVHFVN // ID M4E0J0_BRARP Unreviewed; 347 AA. AC M4E0J0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra022287.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra022287.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra022287.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022287.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra022287.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022287.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra022287.1; Bra022287.1-P; Bra022287. DR Gramene; Bra022287.1; Bra022287.1-P; Bra022287. DR InParanoid; M4E0J0; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 230 328 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 86 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 328 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 38773 MW; 2F196D389004B0ED CRC64; MNPLNQHSQS YGYMGLLQRQ QSGALHENSP YESFHSEASD FPQFSSQQGE APTPPSDTPV ERGKRHRWSP ADDKLLISAS MANPHEPHFF KPLLPGFHSG VTIPLGFFSQ YIEGKTNQKT WKLRSDASDQ TWEVIQEGRR LTGGWKDFTT AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EIQYTHPHII KEEADADDVA DDGAVDADDN ENHHKISGSG AMSSSSFDYC FMAEVTASNL KADKLSLPVA ATTCTALNKQ CQETILVNKE GNSWTVSLRF SESGGMYYIT RGWRKFCLDN RCEVGDIFVF NVVGDGKTTP LMCVCPERKE CSELLSKHLS RKSGRRL // ID M4E0S7_BRARP Unreviewed; 214 AA. AC M4E0S7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra022374.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra022374.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra022374.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022374.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra022374.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022374.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra022374.1-P; -. DR EnsemblPlants; Bra022374.1; Bra022374.1-P; Bra022374. DR Gramene; Bra022374.1; Bra022374.1-P; Bra022374. DR InParanoid; M4E0S7; -. DR OrthoDB; EOG093617ZF; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 24381 MW; AE7228892E4E36FF CRC64; MVTTRQKKAG VTTASHRRPP SEPDSSVKKF WNVVLPSTMK RNMMMIPPKF VNLQGSTLSE FVTVETPVGF RRSIKLKRIG EEIWLHGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFH VSACEIDYPL DEVHISDSDS DSDDDVMDVT DEGFHGTQAT RRNDQSVNGG GTEHNRTKRS RDDEFDKILN DLDGIKLLEE EEDGKRVFRG QQFF // ID M4E0S9_BRARP Unreviewed; 368 AA. AC M4E0S9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra022376.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra022376.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra022376.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022376.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra022376.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022376.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra022376.1-P; -. DR EnsemblPlants; Bra022376.1; Bra022376.1-P; Bra022376. DR Gramene; Bra022376.1; Bra022376.1-P; Bra022376. DR InParanoid; M4E0S9; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 197 218 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 366 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 366 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 41939 MW; 06C570900E4903A5 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSNF KDELSVAVAL TVPDGHVWRV GLRKSDNNKI YFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSSAL MDTAHTHLKR ARLFEDLEDE DAAEVVYPSS SVYPSSQQHP EVTVAAIKGY ASPAIQSFFA GPPVKAEEAT PTPKVTKKRG RKKKNAVPGK AFFLSCFILG LIVMIGVIHP EEVNSSAPRD DDPESRSKFY ESASARKRTV TAEERERAIN AAKTFEPTNP FFRVVLRPSY LYRGCIMYLP SGFAEKYLSG ISGFIKVQLG EKQWPVRCLY KAGRAKFSQG WYEFTLENNL GEGDVCVFEL LRTRDFVLKV TAYRVNSI // ID M4E201_BRARP Unreviewed; 783 AA. AC M4E201; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra022801.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra022801.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra022801.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022801.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra022801.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022801.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra022801.1-P; -. DR EnsemblPlants; Bra022801.1; Bra022801.1-P; Bra022801. DR Gramene; Bra022801.1; Bra022801.1-P; Bra022801. DR InParanoid; M4E201; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 588 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 290 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 690 713 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 783 AA; 85848 MW; C31C201D5C8373D7 CRC64; MFEVKTGSKV CMNASCGSTS TVEWKKGWPL RSGSLADLCF RCGSAYETSL FCETFHLEQS GWRDCYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNCH QLNLNKRGEN PVVFSRLAMN SPHTNGESGI SIRSEADLFS QPLVNGDDKR EEFMAHRGFA NFMKPDNNTN NNNAGEMHEP SQPSLNVALA TLPYSPSFAN PVGGNKLMAA ASQSHSHIGQ CSASSILQKP SKSVPGTPPG TSKSAQARIG RPPVEGRGKG HLLPRYWPKY TDKELQQISG NLNLNIVPLF EKTLSASDAG RIGRLVLPKA CAEAYFPPIS QSEGIPLKIQ DVRGKEWTFQ FRFWPNNNSR MYVLEGVTPC IQSMMLQAGD TVTFSRVDPG GKLIMGARKA AYTVDMQGCG LTNGTSNEDT SSSGVTENPT SINASSQIPE ELKGVPEHLS SPYGVGSSLK KSEMNGGRIC DDPSRVKDKK RTRTIGAKNK RLLLRSEELR VTWEESQELL RPSPNAKPTV VVVEDHEFEE FDEPPVFGKR TILTSKPSGE QERWASCDDC TKWRRLPIDA LLPAKWTCSD NVWDVSRCSC SAPEESLKDL ENVLRAGKEY KKRRIQAAKT EEEPSGLDAL ASAASAAVLG DALGGDSEVA TTTRHPRHRV GCYCIVCIQP PSGKGRHKPT CGCTVCSTVK RRFKTLMMRR KKKQLERDEI TAAAEAYEEH NNKEAAERGD TDENNGEKEG RIDLNSDPYN REDVEAEKED TKGRECSGVA DEVLGLTELG GEAASCEELK AAT // ID M4E255_BRARP Unreviewed; 365 AA. AC M4E255; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra022855.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra022855.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra022855.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022855.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra022855.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra022855.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra022855.1; Bra022855.1-P; Bra022855. DR Gramene; Bra022855.1; Bra022855.1-P; Bra022855. DR InParanoid; M4E255; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 14 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 44 60 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 37 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 41278 MW; 16A7101BDB95A8FA CRC64; MAKKHFFQPL LPGFHSHLVL CLSLSLSLLL YLSCLFLRNE LRDGFVFCML LQTIPVAFFS KHIQGRNDQK TTAKLTSDAA SEKTWEVKTE DGRRLTDGWK EFALAHDLRV GDILIFRQEK DMTFHVTLFG PSCCEIQYDS CLDDKNNIGK INSKKNNPKR EAECSSSSDP SCFLANVMPS TLRYDSLNLP MSFVRANGLE TRCGDIVLMN EKGRSWTLSL KQRLCGRSYI ARGWRSFFSA NGLKAGDFFT FKLIKRGGTL VLLHKSPSHR EPKENEGSEA DDEIESLSTE SDSDEESNQD EKSLIKRRIS IWKASSSPSQ NSSVTLTLKP YNVIKCVLTG ESVKLKLIWE EDTSCVLKFC SKVKP // ID M4E4E9_BRARP Unreviewed; 223 AA. AC M4E4E9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra023652.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra023652.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra023652.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023652.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra023652.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023652.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra023652.1; Bra023652.1-P; Bra023652. DR Gramene; Bra023652.1; Bra023652.1-P; Bra023652. DR InParanoid; M4E4E9; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009567; P:double fertilization forming a zygote and endosperm; IEA:EnsemblPlants. DR GO; GO:0009553; P:embryo sac development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 223 AA; 25479 MW; D10B75B82C687764 CRC64; MVRNGGFGQI MEEGDSPGFF KILRREDLSS QLIRMIPHDI IRSISDDSSS FKMVLKVPWG SLWTVKISKN PSFHYMEDDG WNQFVNDNAL GENEYLTFTH EGNMRFNVNI YGPDGTEMLR PRESATIASS SGMNKREQRE GVYKHVKEEI VSSSESSYYS LKNAQGKKQE LNLGKKKAEE SKKPKKSMKK KKKVDSDLEE GTSSLVPEFS ITIRKSHLVF LVR // ID M4E4N0_BRARP Unreviewed; 209 AA. AC M4E4N0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra023733.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra023733.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra023733.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023733.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra023733.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023733.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra023733.1; Bra023733.1-P; Bra023733. DR Gramene; Bra023733.1; Bra023733.1-P; Bra023733. DR InParanoid; M4E4N0; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 209 AA; 23494 MW; E7FFEC4E39EB9425 CRC64; MGQDYSYTQP SSSDEFDMTS LLQAEADLYA DEGRTGEISS FSFDYYFLAE VTASNLEEDK LYLPVGATSS TPLHKQCQET ILVNKEGNSG NVSLRYSESS GKYYITRGWR KFCLDNRCEI GDLFVFNVVV DGKTTPLMCV CPERKECFEI LKFCLDNRCE IGDLFVFNVV VDGKTTPLMC VCPERKECFE ILSKYLSRKS GESSLGGDS // ID M4E5B4_BRARP Unreviewed; 770 AA. AC M4E5B4; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra023968.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra023968.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra023968.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023968.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra023968.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023968.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra023968.1-P; -. DR EnsemblPlants; Bra023968.1; Bra023968.1-P; Bra023968. DR Gramene; Bra023968.1; Bra023968.1-P; Bra023968. DR InParanoid; M4E5B4; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0016743; F:carboxyl- or carbamoyltransferase activity; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.1370; -; 1. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 283 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 512 562 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 283 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 770 AA; 85217 MW; E95C3AA82ECCD026 CRC64; MESTKVCMNA QCGSTSTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM EVVDNGGVTC ISCAKKSGLF SMNVESNGRE FPTFASAEHV SSVLERTNLK HLLHFQRISP TQPFLQMKQE ESLLPARLEA LRHNTEKKES AQPNLSISLG PTLMTSPFHD VDDRSKTTTP IFQLASRSRQ LLPKPANSAP TTAPPMEPNG SLVSQIHVAR PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ YPHLSNSKII PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT EPEGKLVMGY RKATNSTASQ MFKGSSEPNL NMFSNNLSSG CGDINWSKLD KPEDMSKDGL MLQPSLISAR KRVRNIGTKS KRLLIDSVDV LELRLTWEEA QELLRPPQSA KPSICTVEDH DFEEYDEPPV FGKRTVFVSR QTGEQEQWVQ CDACAKWRRL PVDTLLPPKW LCSDNLLDPG RSSCSAPDEL TPREQDTLLR LSKEFKRRRL ASSNQEEASA LDTLANAAIT TTGEQGETEV AATTKHPRHR AGCSCIVCSQ PPSGKGKHKP SCTCTVCEAV KRRFKTLMMR KRNRGEAGQA SQQAQSDQCR EETEAESIPA VELPAAGGNI DLNSDPASRV SMMSLLQAAT FPLEVYLKQK GVPNTAADQQ SSDIVSTENG SSSAAQEHDR DTSGAPEPMN // ID M4E5D4_BRARP Unreviewed; 377 AA. AC M4E5D4; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra023988.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra023988.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra023988.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023988.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra023988.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023988.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra023988.1; Bra023988.1-P; Bra023988. DR Gramene; Bra023988.1; Bra023988.1-P; Bra023988. DR InParanoid; M4E5D4; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 148 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 377 AA; 43263 MW; 325DB17B745070EA CRC64; MNCLNSMANP PLESPTNPHF FQPLLPGFHT HLTIPVAFFS KHIEGKNKQK TAKLRSDASD KTWEVTLDGR RLTRGWKDFA TAHDLRIGDV IIFKHEGDMV FNVTPFGPSC CEIQYEQSHL IKEEEIDNND DDNENHCRTK SSFSFDYCFV EQVTASNLRL DTLDLPVEAA SSNALNKRCH EMIVVNKEGN SWTVSLKFRE SSGSYYIRGG WRRFCRDNRR KIGDLMVFNL VGDGKTSPMI CICPEEECSE LVRKTKRRSK WVASSSSRRN RFVTISLTRY NFRSSKLILP ATFMKINGIK KQNEIILMDK HGVRWVTKLV KDGSKYGKRG LGKGWKDFCE ANDVLKIGEP FLLELVWEDT LPVLKFCSKV KVETICD // ID M4E5D6_BRARP Unreviewed; 357 AA. AC M4E5D6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra023990.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra023990.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra023990.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023990.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra023990.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023990.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra023990.1-P; -. DR EnsemblPlants; Bra023990.1; Bra023990.1-P; Bra023990. DR Gramene; Bra023990.1; Bra023990.1-P; Bra023990. DR InParanoid; M4E5D6; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 312 336 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 357 AA; 40727 MW; C44B95BB3DE6561E CRC64; MVNASLLSPA PPHFFQPLLS GSKSHLNIPV KFFSEHIEGK HEGKTVMLRS DASEKTWKVK MEGQRLTQGW KEFVEEHVLR VGDFVVFRLE RDMLFNVTAL GSSNCEIQYT PSGSRRQEEE EESVETEKEI KKNLTRFVTL TPTSSSFETG KQHLPASFTR GNGLIKPGKI IMVDKKGDEW VMELKVGKTN VSIMYMYIMS RNGWRIFCGV NGVRAGESLT LELIRGGESP MLKFCSKMEQ TPFEAEARAH KRAKWCQEIR EKTAEEGEPS HRARASNKTN ANKKNLQNKQ SCSVSDQLTE VKHSVVSTIT SIRRFREELK TKEQELEGSL QEINNLVPCW HTERKMQRNQ TTSSSNN // ID M4E5D7_BRARP Unreviewed; 485 AA. AC M4E5D7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra023991.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra023991.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra023991.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023991.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra023991.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra023991.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra023991.1; Bra023991.1-P; Bra023991. DR Gramene; Bra023991.1; Bra023991.1-P; Bra023991. DR InParanoid; M4E5D7; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 99 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 218 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 99 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 218 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 485 AA; 54091 MW; 68A24B05B194727C CRC64; MVDPVMASST KKPIFIVDLS GQNSNPTIPD SFVSNHLKGN VQSTKLMKLT SDASVRTWEV ELDGQRFGRG WKHFSDHHYK TLSKKRARTE TESSSENTYL VAHATPSSLS RNQMYLPSKF ARANGLNNRQ CEIDLRNEHG KSWTLDLTHH KSTGQAFVRS GWTSFCKANG IKAESFRRFK LVQTGTKPVL QLCPNTEGGD EIESEDCSEP SSMNQNKIVA LELKPYMLKS GRVRVPALFG RANGINEAGK ITIVNKDGVE WKLHLGDMKG RELFYIRGLR DCFVANGIKK VGDSFTLEAI RGGTNAILKI CSKEASFDGY KTPQPRMIQA SQDEEKKETK VQKKSRVSAV GPSHRTRASN RSSVGPSNLQ PKQPPQPCSI SDQVAKVKQC VVDALTDVRQ FRSELEVKER NLEAALLEID VLGSSNAAAL IARWRRQLQK ENPLTPLTSP VPEQGDLSVI HQLAKLRHRI VDTLTSVRPF RSELD // ID M4E5Q5_BRARP Unreviewed; 694 AA. AC M4E5Q5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra024109.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra024109.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024109.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra024109.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024109.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra024109.1-P; -. DR EnsemblPlants; Bra024109.1; Bra024109.1-P; Bra024109. DR Gramene; Bra024109.1; Bra024109.1-P; Bra024109. DR InParanoid; M4E5Q5; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 157 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 686 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 157 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 77318 MW; 72819AC92EE0AB9D CRC64; MRSITCKTKS DRLKKTFRDQ ISDPLVYLCD EIALVTCKYY WMDINGDARI ITFVRNDKCN GSDEKRIRER FRSTAMACMC WRHGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLRLIP LKDDDHDYGD GQEGNGFETN SEKTPSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYNA EPPVQNILAK DVHGDVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFMRAESGD LCVGIRRAKR GGIGNGPEYS PGWNPIGGSC GYSSLLREDE SNSLRRSNCS LADRKGKVAA ESVIEAATLA INGRGFEVVY YPRASTSEFC VKALDARAAM RIPWCSGMRF KMAFETEDSS RISWFMGTVS AVSVSDPIRW PNSPWRLLQV AWDEPDLLQN VKRVNPWLVE LVSNVHPTPL TSFSPPRKKM RLPQHPDYNN LINSIPVPSF PSNPLIRSNP LSSVLDNVPV GLQGARHNAH QYYGLSSSDL HHYYLNRPPP PPQPSALPLS QPLGLRNIDS RNEKGFCFLT MGTTPCNDDT ESKKSHIVLF GKLILPEEQI SEKGSTDTAN TSGGSKLSSS EEGSPCSNKA HDAAGLETGH CKVFMESDDV GRTLDLSVLG SYEELSRKLS DMFGIQKAEM LSSVLYRDAS GAIKYAGNEP FSEFLKTARR LTIVTEQGSE SVVV // ID M4E6I7_BRARP Unreviewed; 315 AA. AC M4E6I7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra024391.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra024391.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra024391.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024391.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra024391.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024391.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra024391.1; Bra024391.1-P; Bra024391. DR Gramene; Bra024391.1; Bra024391.1-P; Bra024391. DR InParanoid; M4E6I7; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 315 AA; 36067 MW; 317C7661D48648FF CRC64; METPREPHFF KPLLPGFHSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV SSQYLKDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID EECCDRHHLF VSIINRSSHY NRSTSELSQS TEKLRCNCGV HDSIATLVVV LFSRVPKEKC CPKRCDLSLL FITVS // ID M4E7E0_BRARP Unreviewed; 468 AA. AC M4E7E0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra024695.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra024695.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra024695.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024695.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra024695.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024695.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra024695.1; Bra024695.1-P; Bra024695. DR Gramene; Bra024695.1; Bra024695.1-P; Bra024695. DR InParanoid; M4E7E0; -. DR OrthoDB; EOG09360KHU; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 157 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 266 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 157 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 266 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 468 AA; 52695 MW; 74B50D7E13C9408C CRC64; MADDQSLHSP ITPHFFQPLL PGFHTHLNIP VAFFSRHVQG NNDHIKTAKL RTDASAKTWL VKINGLKLTD GWEDFAVAHD LRIGDIIIFR YEGEMVFHVT AFGPSCCDIQ YTSESSHNIN DDSQDQTNNT GNSSGEKRKR VKKTPRTKEE SSSDHSHFMA HVSPSSLRFD RLYVPISFAR SNGLDNMSGK EIVLLNQEGR SWNLNITYTK ASVQTLVGPG WRRFCAENGM NKGHHYTFKL VGKSAPPVIR LSLSEPAPES SLHHSNYVGS VSSNSLRKDK LYIQRKFVNA NGLKGLSEIV LKNEWGGSWN LGLRYYESLD HTYLGPGWKT FCQVNRIKTG DSFMFKVVET GDKPVLLLCT TNRGKTPLDC PEDSGDINSL SSDTGSRESQ ESEEESLEDD DSSSEESFEM VKRENSSRCR ASSSYSQDRF VKLTLTPRAL KTYKLMLPLD FTRVNGINKP GKRMERVL // ID M4E7E1_BRARP Unreviewed; 530 AA. AC M4E7E1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra024696.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra024696.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra024696.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024696.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra024696.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024696.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra024696.1; Bra024696.1-P; Bra024696. DR Gramene; Bra024696.1; Bra024696.1-P; Bra024696. DR InParanoid; M4E7E1; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 157 255 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 270 366 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 432 529 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 157 255 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 270 366 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 432 529 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 59646 MW; 6AFCB2F0816EA5A9 CRC64; MAHQSLHSPT NPHFFQPLLP GFHTYLNIPV AFFSKHVEGS NDHIKTAKLR TDASAKTWLV EMDGLKLTDG WEDFAVAHDL RIGDIIIFRH EGKMVFHVTA FGPSLCEFQY TSASSHNIND VSDDDHTNKT GNSSGEKRKR VKKNPRTKEE SSSDHSHFVA HVTPSSLSCD RLYVPKGFAM SNGLDNMSGK EIVLLNEEGK SWNLNITYNE SGMHTFVRPG WRRFCAENGI SQGHHCTFEL VRKSAPPVLR LSRAEHDPKP APESSLHHSY YVGSASSNSL RIDKLYLQMK FVTANGMKKG FSEIILKNEW GGRWSVRLRQ YASSNRTYLG PGWKTFCQVN GIKAGDPFMF KLVETGDKPV LLLCSSNRGE TPLECSDDVN SLSSDTSSGE ESQESEEESL EDDSRSKDCV EMEKRKSSLR CKCSSSYSKH RFVRLTLTQN ALKTSVQHLP LGFTRVNGIN RSRKIMLLGK DGVKKWVVDL LKNKSTGAMR IRKGWRELCD AHGVKVGESF LLELIRDEEA IPVLKFCTKL // ID M4E7E2_BRARP Unreviewed; 543 AA. AC M4E7E2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra024697.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra024697.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra024697.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024697.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra024697.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024697.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra024697.1; Bra024697.1-P; Bra024697. DR Gramene; Bra024697.1; Bra024697.1-P; Bra024697. DR InParanoid; M4E7E2; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 164 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 308 371 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 444 542 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 164 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 308 371 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 444 542 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 543 AA; 61133 MW; A9ABCFACEB7DA48F CRC64; MKCSRMAYDQ SLHSPNNPHF FQPLLPGFHT YLNIPVAFFL KHVQGSNDHI KTAKLTTDAS AKTWLVKVDG VRLTDGWEDF AVGHDLRIGD ITIFRHEGEM VFHVTAFGPS CCDIQYTSES SHNINDDSQD QTNNAVTGNS SGEKRKRVKK NPRTKEDSSS DHSQFVAHVS PSSLSSDRLY IPTGFARSNG LDNMSGKEII VLLNEEGRSW SLDMTCNKVG MQTFVRPGWR RFCAENGMKK GHHYTFKLVR RSAPLIIRLS HAEHEPEPAT ESSLNHSYYV GSVSPNSLST DKLRHFVTAN GLEKGLSEIT LKNEWGGSWI LGFRHYEPQN HTYLGPGWKT FCQVNGIKAE DSFMFKLVET GDKPVLLLCT SNRGKTPLEC SEDRDDVNSL SSDTSSEDDS KEESQESDKE SIEDADRSQQ CIVMEKENNS LRCICSSPYS KHRFVRLSFT QSALKTSVLY LPLAFTRMNC INKPIKIMLL GKDGVKKQVV DLLKNKSTGA MRFGKGWREF CDAHGVKVGE SFQLELFRED EEAIPVLKFC TTT // ID M4E7I0_BRARP Unreviewed; 372 AA. AC M4E7I0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra024735.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra024735.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra024735.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024735.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra024735.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024735.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra024735.1-P; -. DR EnsemblPlants; Bra024735.1; Bra024735.1-P; Bra024735. DR Gramene; Bra024735.1; Bra024735.1-P; Bra024735. DR InParanoid; M4E7I0; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 196 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 196 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 41070 MW; 713A3EB4B7886C28 CRC64; MDNSCIDDST SNTSGSLSTS TLSAKKKLSP PPPPPATMRL YRMGSGGSSV VLDSENGVET ESRKLPSSKF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE EEAAASYDIA ARRFRGRDAV TNFKSPALDG TDAESAFLEA HSKAEIVDML RKHTYADELQ QSKRKFLDGN GKRCGSGTAA MSKGNDGVSR AREVLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLPAMTTA TVVTAMTPSP TKGVLINLED RTGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV CFERSTGPDR QLYIDWKVQS GKEEITPVQS VVRLFGVNIF NETTNAKPND VAVECGGKKR SREVDLFALG CSKKQTMMIN AL // ID M4E8Q3_BRARP Unreviewed; 829 AA. AC M4E8Q3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Methionine aminopeptidase {ECO:0000256|RuleBase:RU003653}; DE EC=3.4.11.18 {ECO:0000256|RuleBase:RU003653}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra025159.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra025159.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025159.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra025159.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025159.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- FUNCTION: Removes the N-terminal methionine from nascent proteins. CC The N-terminal methionine is often cleaved when the second residue CC in the primary sequence is small and uncharged (Met-Ala-, Cys, CC Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. CC -!- CATALYTIC ACTIVITY: Release of N-terminal amino acids, CC preferentially methionine, from peptides and arylamides. CC {ECO:0000256|HAMAP-Rule:MF_03174, ECO:0000256|RuleBase:RU003653}. CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Note=Binds 2 divalent metal cations per subunit. Has a high- CC affinity and a low affinity metal-binding site. The true nature of CC the physiological cofactor is under debate. The enzyme is active CC with cobalt, zinc, manganese or divalent iron ions. Most likely, CC methionine aminopeptidases function as mononuclear Fe(2+)- CC metalloproteases under physiological conditions, and the CC catalytically relevant metal-binding site has been assigned to the CC histidine-containing high-affinity site. {ECO:0000256|HAMAP- CC Rule:MF_03174, ECO:0000256|RuleBase:RU003653}; CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- SIMILARITY: Belongs to the peptidase M24A family. Methionine CC aminopeptidase type 1 subfamily. {ECO:0000256|HAMAP- CC Rule:MF_03174}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra025159.1-P; -. DR EnsemblPlants; Bra025159.1; Bra025159.1-P; Bra025159. DR Gramene; Bra025159.1; Bra025159.1-P; Bra025159. DR OrthoDB; EOG09360EGZ; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070006; F:metalloaminopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0070084; P:protein initiator methionine removal; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd01086; MetAP1; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR HAMAP; MF_01974; MetAP_1; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000994; Pept_M24. DR InterPro; IPR001714; Pept_M24_MAP. DR InterPro; IPR002467; Pept_M24A_MAP1. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00557; Peptidase_M24; 1. DR PRINTS; PR00599; MAPEPTIDASE. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR SUPFAM; SSF55920; SSF55920; 1. DR TIGRFAMs; TIGR00500; met_pdase_I; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Aminopeptidase {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Protease {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 205 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 205 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT METAL 511 511 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 522 522 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 522 522 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 585 585 Divalent metal cation 2; catalytic; via FT tele nitrogen. {ECO:0000256|HAMAP- FT Rule:MF_03174}. FT METAL 619 619 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 650 650 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 650 650 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT BINDING 494 494 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_03174}. FT BINDING 592 592 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_03174}. SQ SEQUENCE 829 AA; 92891 MW; D41AB4C6502913F3 CRC64; MDAASSVDES STSTDSVHTP AKIPPATARK SPSPASLYRM GSGSSVVLDS ENGVEAESRK LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA RAYDVAAHRF RGRDAVTNFK ADTTLGNGDE VEFLNAHSKA EIVDMLRKHT YKEELEQRKR NLHGKGNTKE TAFAAVRVAT GFKTAETLFE KAVTPRDVSV RGTLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNGQDQQ LYIGWKSKSE SDQDTGRVVV RLFGVDITSL KSQSDVVMKE ETEMLSLRCN KKQRLNVPAK MSFGISQSHS LFNGGQLPPP IYFAGAPANL SSLLLSVKKK KSSFSPRISR IQELQNTLQV KRNAPLVCGR VSPRLHVPDH IPKAPYLESS EPPKISSEHQ FPDSNGIVKM KAACELAARV LNYAGTLVKP FVTTDEIDKA VHKMVIESGA YPSPLGYGGF PKSVCTSVNE CMFHGVPDSR QLQDGDIINI DVAVYLDGYH GDTSKTFLCG DVDESLIQLV KVTEECLEKG ISVCRDGASF NEIGKIISEH AAEKHGYNME RFIGHGVGTV LHSEPLIYLH KNYDFEIGYM IEGQTFTLEP ILTIGTTEFV TWPDKWTILT ADGGPAAQFE HTILITESGA DVATRRTLVG QAFRVDEEES RATSCFFSFS PFSEKLGFHR ERRLIVRRRF PRVQCSTSTT SSSLHQRRDL KSNYGFVLWM DPEEDRRHSK KQHEHINMLS FVADSEYGIP KRCPCGGRLI NEVRGEEDYD TLPGKRFFTC RNYEVKSPLF IIISSIFMFY IVSCISDDS // ID M4E8X3_BRARP Unreviewed; 272 AA. AC M4E8X3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra025229.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra025229.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra025229.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025229.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra025229.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025229.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra025229.1-P; -. DR EnsemblPlants; Bra025229.1; Bra025229.1-P; Bra025229. DR Gramene; Bra025229.1; Bra025229.1-P; Bra025229. DR InParanoid; M4E8X3; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 155 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 272 AA; 30810 MW; BDB1E384BF9A5122 CRC64; MGEAGYAHDV ETKVSALMAS VDHLPMFGSE SGHDNGYLSA SVPLLGVNWK KRRMPRQRRS SSSFNLLYFP TLPPSSHVPT HLPAREGIPL EMEDLDGLHV WTFKYRFWPN NNSRMYVLEN TGDFVSTHCV QPGDFIMFYQ YLDSCNYVIQ AKKAYEEEEE EDITNVEEDD VYTNLTRIEN TVLNDLPLPD YNQHYNNNNN EKCSYVYPAF DDVTATTTNA PFVYDTTALS SNDTPLDYLG GPATTTSTNS YYSELGPFEG FGSVENISLD DF // ID M4E945_BRARP Unreviewed; 110 AA. AC M4E945; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra025301.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra025301.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra025301.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025301.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra025301.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025301.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra025301.1; Bra025301.1-P; Bra025301. DR Gramene; Bra025301.1; Bra025301.1-P; Bra025301. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 59 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 53 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12754 MW; CDA3E6F43531DEFD CRC64; MEESQQEPQE GGKSSYVQWS PQENNTLINL LLDCITAVHG FGFLVSLLSL AQVLPIAFTK LNKIRMAKRM SLLDKHGVKW SIKLWFEKER KRMRLVGGWK EFYDANDVKI // ID M4E9L8_BRARP Unreviewed; 207 AA. AC M4E9L8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra025474.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra025474.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra025474.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025474.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra025474.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025474.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra025474.1; Bra025474.1-P; Bra025474. DR Gramene; Bra025474.1; Bra025474.1-P; Bra025474. DR InParanoid; M4E9L8; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 90 188 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 90 188 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 207 AA; 23094 MW; 69458542CA4E5E8D CRC64; MANPHEPHFF KPLVPGFHSG ITIPLGFFSQ HIEGKTNQKT WKLRSDASDQ TWEVIQEGRR LTGGWKDFTT AHDLRIGGSG AMSSSSFDYC FMAEVTASNL KADKLSLPVA ATTCTALNKQ CQETILVNKE GNSWTVSLRF SESGGMYYIT RGWRKFCLDN KCEVGDIFVF NVVGDGKTTP LMCVCPEKKE CSELLSKHLS RKSGRRL // ID M4EAQ8_BRARP Unreviewed; 250 AA. AC M4EAQ8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra025867.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra025867.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra025867.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025867.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra025867.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra025867.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra025867.1; Bra025867.1-P; Bra025867. DR Gramene; Bra025867.1; Bra025867.1-P; Bra025867. DR InParanoid; M4EAQ8; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 250 AA; 28651 MW; 93FD98E91F689252 CRC64; MGNPQEPHFL KPLLPGFHNG VTIPLSFFSQ HIQGKTNGKK WKLRSDASDQ TWKVIQEGRR LTEGWKDFTT AHDLRIGDIL IFKHEGDMVF HVTPFGLSCC EIQFTHPHSI KEEADVDDTH SFSFDYCFLA EVTASNIHED KLYLPVEATT CTALNKQCKE IILVNKEGNS WTGSLRYSEA DDMYYIRKGW KKFCEENNCN IGDLFVFNVV RDRNTTPLMC VCPERKECAE LLIKHLSRMN GDIASSSRVI // ID M4EB75_BRARP Unreviewed; 80 AA. AC M4EB75; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra026034.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra026034.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra026034.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra026034.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra026034.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra026034.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra026034.1-P; -. DR EnsemblPlants; Bra026034.1; Bra026034.1-P; Bra026034. DR Gramene; Bra026034.1; Bra026034.1-P; Bra026034. DR InParanoid; M4EB75; -. DR OrthoDB; EOG09360V85; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 47 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 47 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 80 AA; 9233 MW; D045A540BA9937E9 CRC64; MKKRGETVFL TVGWENFVKD NELEDGKMME FIYDCDRTFY VVIFGHGGVS ELRVFPQAVV DVGDYATGEE EEEEEKNKSN // ID M4ECJ9_BRARP Unreviewed; 326 AA. AC M4ECJ9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra026509.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra026509.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra026509.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra026509.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra026509.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra026509.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra026509.1-P; -. DR EnsemblPlants; Bra026509.1; Bra026509.1-P; Bra026509. DR Gramene; Bra026509.1; Bra026509.1-P; Bra026509. DR InParanoid; M4ECJ9; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 193 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 193 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 326 AA; 36579 MW; A40C3257C0DCD2D7 CRC64; MEAVSSVDES STSTVSIHTS AKIIPPPTTA KLSSPASLYR MGSGSSVVLD SENGVEAESR KLPSSKFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA ARVYDVAAHR FRGPDAVTNF KLDATFRNGD GEEVEFLNAH SKYEIVDMLR KHTYKEELEQ RKRKRNGGNG DTKETAFANV TVVTGFKTAE CLFEKTVTPS DVGKLNRLVI PKHQAEKHFP LPLTGDDSVR GTLLNFEDVN GKVWRFRYSY WNSSQSYVLT RGWSRFVKEK RLCAGDLISF KRSNGQDQEL YIGWKSKAGL EQDTGRVVVR LFGVDIASIK SRKTMS // ID M4EDQ7_BRARP Unreviewed; 340 AA. AC M4EDQ7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra026917.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra026917.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra026917.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra026917.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra026917.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra026917.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra026917.1; Bra026917.1-P; Bra026917. DR Gramene; Bra026917.1; Bra026917.1-P; Bra026917. DR InParanoid; M4EDQ7; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 59 114 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 59 114 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38064 MW; 236D4542715C0F14 CRC64; MEVSSVDEST TSTCSIYETP AITPAKTSVN LHRMGSGSSV VLDAENGAEA ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VHRFRGRDAV TNFKDARLDD GEVEFLNTHS KSEIVDMLRK HTYSEELEQS KRRRNGSGNA VRSTTQNDGV STTEFRSAVS LFEKAVTPSD VGKLNRLVIP KHHAEKYFPL PPSSNVSVKG VLLNFEDVAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LRAGDVVSFS RSDGQDQQLY IGWKSRSGSD VETGRVLRLF GVNISPAGSR NDVVGNKRVV NDTEMLSLVC SKKQRIFHAL // ID M4EEZ8_BRARP Unreviewed; 227 AA. AC M4EEZ8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra027360.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra027360.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra027360.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra027360.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra027360.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra027360.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra027360.1; Bra027360.1-P; Bra027360. DR Gramene; Bra027360.1; Bra027360.1-P; Bra027360. DR InParanoid; M4EEZ8; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 63 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 111 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 63 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 111 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 25885 MW; 3E19A683EE446C3F CRC64; MNQKIWKLRS DTSDKTWEVI QEGRRLTGGW KDFTTAHDLR IVDIFILKDE GDMVFHVTPF GPSCCDIQYT HPHIIKEEAD ADDAADDADD NEHHHKIRGT WAMSSFSFDY CFLAEVTASN LKEDKLHLPV GATSSTALNK QCQEMILVNK EGNSWTVSLQ FSESGGMYYI GRGWRKFCLD NRCDIGDLFV FNLIEDGKTT PLMCVCSESK ECSELLSKHL SRKKKEC // ID M4EKH6_BRARP Unreviewed; 243 AA. AC M4EKH6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra029293.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra029293.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra029293.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra029293.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra029293.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra029293.1; Bra029293.1-P; Bra029293. DR Gramene; Bra029293.1; Bra029293.1-P; Bra029293. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 129 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 129 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 243 AA; 27754 MW; CA55648F658B41B3 CRC64; MVIGQDENAV EKEAPPPPPP RFQVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHSNEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRTSPSE FIVPFDQYME SVKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPTR WAKSKWRSLK VRWDETSSIP RPERVSPWKI EPALAPPALS PVPMTRPKRP RSNMAPSSPD SSMHIKEGKV FNC // ID M4EL71_BRARP Unreviewed; 544 AA. AC M4EL71; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra029538.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra029538.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra029538.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra029538.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra029538.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra029538.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra029538.1-P; -. DR EnsemblPlants; Bra029538.1; Bra029538.1-P; Bra029538. DR Gramene; Bra029538.1; Bra029538.1-P; Bra029538. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 544 AA; 61473 MW; 984E7BF60D7D3466 CRC64; MVSQIEGVYS LRSDEEITAL SVEEEGGGSK EMTVPISGDR TQIDKATALL KEAMDQAWKE PTFQLCTRRK KKEELSSRFA KITPSLYSFE KGRQQLPDTF TKVNKLEPGE IILLAKDGVT YTMMLKLKKN GGSRCYLHIK SPTWEKFCLA NEVRAEETFI LELTEKRELK FFSKYDNETE RTGSLNEKEP NLVQQVLTSQ RHQTSEFRSD CPEEEHEREH SGCSDVLPRV IEEEECVALT PYPTVSDETS PEPTRPAETG DVQYSLGREA AQYPRYPHSR TDITTQPGVL EAEESYTTPF ACQIQQLHFL ESSGNTSTAS QDSSKGRTRA KYLKERFVST PTSAGQGAVS DQDECSLPSP LVGTNQADLS SANTEGQNIA AETGFVESSA GVAAPGQSAT QPVPPVFSDP FPRKLEMLQR QSDIRKNYVE AKSLLKAEFQ RRSAELNEQF KRKHDDVEAE YTAKNSDHTS SLRMFSNLQL ELDKSQRQSE IEKNYEEENS LLTAELKRRR AEVYEEFKRK HDDIEAEYTS SYPSSAHCPM PQPR // ID M4EM72_BRARP Unreviewed; 364 AA. AC M4EM72; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra029892.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra029892.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra029892.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra029892.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra029892.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra029892.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra029892.1; Bra029892.1-P; Bra029892. DR Gramene; Bra029892.1; Bra029892.1-P; Bra029892. DR InParanoid; M4EM72; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 146 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 260 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 146 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 260 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 364 AA; 41454 MW; FE3EAC6505D380C1 CRC64; MANASASSPM NPHFFQPLLP GFQSYLNIPM AFYSKHIKGT TDEGNANAGD KAVVKLRSDA SDLTWEVKMD GRRLTQGWQE FTTSHDLRVG DIVIFRHDGD LLFHVTTFGP SCCEIQYDDV FHKSSDSDLA MNQETREAVS PSDKSCFVAR VTPTNLRKDS LFLPRGFSRS NGLTNRECEI ILLNEYEKPW TASLIYYKTT GDVYIRTGWR RFCRENRKRV NGLLTFKLVQ AGTKPVLQLC SSMHNRDCLR TSSSRSQERF LTLTLTPYSL TKSKLCLPGK FVWLNGIENA RKITLVDRYG VKRTTSLRPD NNYGAMRMGK EWREFCEANG VKAGESFTLE LIKEEEEEEE DTAATHLLKF CTKA // ID M4EMR7_BRARP Unreviewed; 344 AA. AC M4EMR7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra030087.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra030087.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra030087.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030087.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra030087.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030087.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra030087.1-P; -. DR EnsemblPlants; Bra030087.1; Bra030087.1-P; Bra030087. DR Gramene; Bra030087.1; Bra030087.1-P; Bra030087. DR InParanoid; M4EMR7; -. DR OrthoDB; EOG09360FID; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 261 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 344 AA; 39402 MW; 930D59A36908D705 CRC64; MDNFLPFSSS NANSVQELSM DLNKNRSHFS MAQPQHLLPP YSYVACPALD QTGTMNHQPL HSSDAFPQIP VVQTGGEFGY LVCKPGVRQE RGGFLDPHST KMARINRKKA MLRSRNNSNP NSSSNELVDS RRQVALTMKN NAEIAARKDF YRFSSFDNKK LRVLLVKHLK NSDVGSLGRI VLPKREAEGN LPELSEKEGM VLEMRDVDSV QSWYWSNNKS RMYVLENTGE FVKKNGVLMG DYLTIYEDES KNLYFSIRKH PHKQNDGRED ESMEVIEMNF YEDIMFDYIP NDEDDSIAML LGNLNEHYPY PNDLMDLTVN LDQHQQATSS SPPADHMSSN DFLW // ID M4ENB7_BRARP Unreviewed; 514 AA. AC M4ENB7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra030287.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra030287.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra030287.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030287.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra030287.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030287.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra030287.1; Bra030287.1-P; Bra030287. DR Gramene; Bra030287.1; Bra030287.1-P; Bra030287. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.160.20.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR012334; Pectin_lyas_fold. DR InterPro; IPR011050; Pectin_lyase_fold/virulence. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF51126; SSF51126; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 317 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 392 490 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 317 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 392 490 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 514 AA; 57189 MW; 553E39E4B4935CF2 CRC64; MASSSSSSSS SIDFSTAILI RVDQSGKGDF NKIQEAIESI PPNLNNSQLY FIWVKPGVYS DRFGKKQTLN TAHARFVDKT DNVIRGVPAA PTVVTGNGQD ISAHPDKHVL DGNANTIINI IQNISEYSTP PSSPQNIQVG NKTPSIEGVA KPGFATPDPA TDCGAMSAHS ENHSRHTDNI IPLEDVNTVP PHFIETPSFS LGLTQEEHIR SAEPLTRQKV ADLTTLSDIN VGDNIAYPQS LRNSKRQKTL PPALVHDYLC GPHIDSRLHR PRESVFVCYE RREIERKINV LSRKLSVNVS YSSYVGLRAE INKPWKLRSD ASDQIWEVIR EGRTLTKGWK EFTEAHDLRI GDIVIFKHEG DMVFHVTPFG PSCCEILWSD ADDAPTFSYD YCFLAEVTPT NQKDDKMFLP VEAMRCGALN QQCKEVKLVN KEGKSWTARF GFSESDGAYY ISRGWRKFCH DNRCTNGALL VFNVVGDGTT TPLLCVCPER KECTDLLINH FSRIDGSIAS TSRN // ID M4ENT8_BRARP Unreviewed; 316 AA. AC M4ENT8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra030458.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra030458.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra030458.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030458.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra030458.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030458.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra030458.1-P; -. DR EnsemblPlants; Bra030458.1; Bra030458.1-P; Bra030458. DR Gramene; Bra030458.1; Bra030458.1-P; Bra030458. DR InParanoid; M4ENT8; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 69 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 143 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 69 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 143 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 36228 MW; 8FCCBE4B435F08D5 CRC64; MKPTVSPTAT TKYKGVVQQQ NGHWGAQIYA DHKRIWLGTF KSAAEAAAAY DSASIKLRSF DANSHRNFPW SEITIHEPDF QKSHTTEAVL NMIRESSYQQ KFSDYLIVRS QMVAIANINI VGSKQRRGGG EESTKCFSCT ELFHKELTPS DVGKLNRLVI PKKHAVKHLP FISERDEGET GGAVEDVEVV FYDRAMRQWK FRYCYWKSSQ SFVFTRGWNG FVKEKNLKEK DVIVFYTCDV PSNFKTLEGQ SNKFLMIDVD YFTDKGSVEP KEVNEMVHNV SEREMKTENF FGTKVEEETK SEVSKGGFML FGVRIQ // ID M4ENV6_BRARP Unreviewed; 325 AA. AC M4ENV6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra030476.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra030476.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra030476.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030476.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra030476.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030476.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra030476.1; Bra030476.1-P; Bra030476. DR Gramene; Bra030476.1; Bra030476.1-P; Bra030476. DR InParanoid; M4ENV6; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 107 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 179 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 107 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 179 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 37461 MW; 541749F8238D3AB5 CRC64; MGICNQMTET STSSNPLLPL KKRKRPVDDT TDNVLAVATK KVALLGNSKY KGVVEHHRNG HWGAQIYIDH KRIWLGTFKS SVEAAMAYDS ASIKLRSFDA TCHRNFPLNT STVHEPNFQK GYTTEAVLEM IKDGSYQQKF KDYLSLPFHN VASINLVGSE RVQGDQDSTK YRLTCTELFR KGLTPSDVGK LNRLVIPKRH AVKYLPFINE REEGEIVEDV EVVFFDKTMR QWKFRYCYWT SSQSFVFTSG WKRFVKEKNL KERDVIVFYR CDLVGQSKNF LMIHVQYSSE GEVKTENFVN SKLKEEETKS VDNKGGFMLF GVKIQ // ID M4ENX7_BRARP Unreviewed; 354 AA. AC M4ENX7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra030497.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra030497.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra030497.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030497.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra030497.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra030497.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra030497.1-P; -. DR EnsemblPlants; Bra030497.1; Bra030497.1-P; Bra030497. DR Gramene; Bra030497.1; Bra030497.1-P; Bra030497. DR InParanoid; M4ENX7; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 39946 MW; E03CE6317F6FFD78 CRC64; MDLSLAPATN SDQEQDRDQE LNSNIGASSS SGTGNDSNFP MMMTIPQPEK EHMFDKVVTP SDVGKLNRLV IPKQHAERYF PLDSSNNQNG TLLNFQDRNG KMWRFRYSYW NSSQSYVITK GWSRFVKEKK LDAGDIVSFQ RGIGDESKRL KLYIDWRHRP NMMSVAQTHN QFGNFGFNFN FPTTSQCFNR FHPLPEYNTV PIHRSLNHQR SYYYNNHGQE FVGYVYGNLA GRCYYTGGSP FDQRSIVGSE PLVIESVPVV PGRLTPVILP PLPPPSMAGK RLRLFGVNME CGNNDNNQQE ESWVLPRGEM GASSSSSALR LNLSSDHDDE DDNGDGDGDG GDQFAKKGKS SRFL // ID M4EQW3_BRARP Unreviewed; 1227 AA. AC M4EQW3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra031186.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra031186.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra031186.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra031186.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra031186.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: The coatomer is a cytosolic protein complex that binds CC to dilysine motifs and reversibly associates with Golgi non- CC clathrin-coated vesicles, which further mediate biosynthetic CC protein transport from the ER, via the Golgi up to the trans Golgi CC network. {ECO:0000256|PIRNR:PIRNR003354}. CC -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, CC beta, beta', gamma, delta, epsilon and zeta subunits. CC {ECO:0000256|PIRNR:PIRNR003354}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|PIRNR:PIRNR003354}. CC Golgi apparatus membrane {ECO:0000256|PIRNR:PIRNR003354}; CC Peripheral membrane protein {ECO:0000256|PIRNR:PIRNR003354}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR ProteinModelPortal; M4EQW3; -. DR STRING; 3711.Bra031186.1-P; -. DR EnsemblPlants; Bra031186.1; Bra031186.1-P; Bra031186. DR Gramene; Bra031186.1; Bra031186.1-P; Bra031186. DR InParanoid; M4EQW3; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0030126; C:COPI vesicle coat; IEA:UniProtKB-UniRule. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0006886; P:intracellular protein transport; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0016192; P:vesicle-mediated transport; IEA:InterPro. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.120.10.30; -; 2. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016391; Coatomer_asu. DR InterPro; IPR010714; Coatomer_asu_C. DR InterPro; IPR006692; Coatomer_WD-assoc_reg. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR020472; G-protein_beta_WD-40_rep. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR InterPro; IPR001680; WD40_repeat. DR InterPro; IPR019775; WD40_repeat_CS. DR InterPro; IPR017986; WD40_repeat_dom. DR Pfam; PF02362; B3; 2. DR Pfam; PF04053; Coatomer_WDAD; 2. DR Pfam; PF06957; COPI_C; 2. DR Pfam; PF00400; WD40; 5. DR PIRSF; PIRSF003354; Coatomer_alpha_subunit; 3. DR PRINTS; PR00320; GPROTEINBRPT. DR SMART; SM01019; B3; 2. DR SMART; SM00320; WD40; 7. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF50978; SSF50978; 5. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS00678; WD_REPEATS_1; 1. DR PROSITE; PS50082; WD_REPEATS_2; 6. DR PROSITE; PS50294; WD_REPEATS_REGION; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW Cytoplasm {ECO:0000256|PIRNR:PIRNR003354}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW ER-Golgi transport {ECO:0000256|PIRNR:PIRNR003354}; KW Golgi apparatus {ECO:0000256|PIRNR:PIRNR003354}; KW Membrane {ECO:0000256|PIRNR:PIRNR003354}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Protein transport {ECO:0000256|PIRNR:PIRNR003354}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Repeat {ECO:0000256|SAAS:SAAS00780417}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transport {ECO:0000256|PIRNR:PIRNR003354}; KW WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221, KW ECO:0000256|SAAS:SAAS00775705}. FT DOMAIN 5 241 WD_REPEATS_REGION. FT {ECO:0000259|PROSITE:PS50294}. FT REPEAT 5 46 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 47 88 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 89 130 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 131 164 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT REPEAT 200 241 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT DOMAIN 227 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 305 403 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 428 510 WD_REPEATS_REGION. FT {ECO:0000259|PROSITE:PS50294}. FT REPEAT 428 469 WD. {ECO:0000256|PROSITE- FT ProRule:PRU00221}. FT DNA_BIND 227 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 305 403 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1227 AA; 137608 MW; 3EBE3AF06CF8D53F CRC64; MLTKFETSSN QVRGLSFHPK RPWILSSLHT GVIQLWDYRM TTLIDTFEEH EGPVRGVHFH ISQPLFVSGG DDYKIKVWNY KTHKCLFTLL GHLDYIRTVQ FHHECPWIVS ASDDQTIRIW NWQSRTCVSV LAGHNHYVMC ASFHPKEDLL VSASLDQTVR VWDIAPLRNK KKTPLADDDD IMGFTQMNSD LFDATVKYVL EGHDRGVNWA AFHPTLPLIV SGADDRKVKL WRTNEGRTLT KGWKEFTEAH DLRIGDIVIF KHEGDMVFHV TPFGPSCCDI QYTHPHIVKE EADADDAPTF SYDYCFLAEV TPTNQKDDKM FLPVEAMRCG ALNQQCKEVK LVNKEGKSWT ARFGFSESDG AYYISRGWRK FCRDNRCTNG DLFVFNVVGD GTTTPLLCVC PERKECTELL IKHFSRIDET KAWEVDTLRG HSSNVSSVMF HAKHDVIVSN SEDKTIRVWD ATKRTEIKTF RRENDRFWIL AAHPETNLLA AGHDSGLIVF KLERERPAFA LSGDSLLYAK DGFLRRYEYS TQKDSQVIPI QRPRTVSHSP TENAALISSD LDGGSYELYI IRSGVVQRDA KRVSGGGSAV FIARNRFAVL DKSTGQEEVL VVKNLKNEVV KKIPLPIPTY AIFYAGTGTL LCRCEGKVVM FDLTQRLVLG EVHTPSVRHV VWSNDMESVA LLSKHTIILA SKKELVIQCT LHETTTRVKS GAWDDDNGVF IYTTLNHVKY CLPNGDSGVI RTLDVPIYYH QVNATEYMFK LALMRKRFDH VARMIKSSRI SGQAMVAYLQ QKGFPEVALH FVEEEGHERV RFNLAIESGN MSVAVASATK INEKDYWFRL GVEALRQGGN SSIVEFAYQQ TRSIERLSFL YLITGNLEKL SKLMKKKDVM GQFQNALYLG DVKERVKILE KGGLLPLAYI TASVHGLKDI AERLSIALGD DVPSLPQGKT HSLLMPPIPV VCGGDWPLLR VMKGIFEGGL ESGNDDVEEG DWGDALDMVD VEEDGEGSGW GGLELLDTPF MTPSQGMDVS QIWSQESPLA AEQAAAGSFD TAMSLLHRQL GIKNFAPLKS MLLDLFSGSH SYLPAFSSSP VLTSLTANLQ PPHLRLALLS AMGVCYKARN LATAYNFAKR LLETNPTESQ AKTARQIVQA AERNMTDATE LNYDFRNPFV ICGSTYVPIY RGQENVSCPY CTARFVPSQE GNICGICDLA VIGADASGLL CSPSQVR // ID M4ER79_BRARP Unreviewed; 216 AA. AC M4ER79; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra031302.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra031302.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra031302.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra031302.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra031302.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra031302.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra031302.1; Bra031302.1-P; Bra031302. DR Gramene; Bra031302.1; Bra031302.1-P; Bra031302. DR InParanoid; M4ER79; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 192 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 192 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 216 AA; 23973 MW; D82A3DF06745430B CRC64; MGQNYSYAQP SSSDEYDLTS LLEAEAALYA EEAESSYNIG EPVQCPPQPF QYLCGGHTNA EEMRAFETQL SLLKDQVQGS RRTGAMSSFS FDYCFVAEVT AFNLKEDKLY LPVGATSSTA LHKQCKETIL VNKEGNSWNV SLRFSESGGK YYITRGWRKF CLDNRCEIGD LFAFNVVGDG KTTPLMCVCP ERKECSEILS KYLSRTSGES SLGGHS // ID M4ERY8_BRARP Unreviewed; 240 AA. AC M4ERY8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra031565.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra031565.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra031565.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra031565.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra031565.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra031565.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra031565.1; Bra031565.1-P; Bra031565. DR Gramene; Bra031565.1; Bra031565.1-P; Bra031565. DR InParanoid; M4ERY8; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 118 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 118 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 240 AA; 27381 MW; 08D0C97EE8567F91 CRC64; METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EILWSDADDA PTFSYDYCFL AEVTPTNQKD DKMFLPVEAM RCGALNQQCK EVKLVNKEGK SWTARFGFSE SDGAYYISRG WRKFCRDNRC TNGDLFVFNV VGDGTTTPLL CVCPERKECT ELLIKHFSRI DGSIASTSRN // ID M4ETE3_BRARP Unreviewed; 295 AA. AC M4ETE3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032074.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032074.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032074.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032074.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032074.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032074.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra032074.1; Bra032074.1-P; Bra032074. DR Gramene; Bra032074.1; Bra032074.1-P; Bra032074. DR InParanoid; M4ETE3; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33877 MW; 5C77A991AFA19B51 CRC64; MSVTQGKLLK KILGVETNRN DTSQSKEAIK KRTRSKATIK EENITTSQNR FVTLTATPTC RLNLPLEFTK GNGINKARKI TMRDRFGIKW STVLLMNKNE RRTMSLGRNW KGFCEFNDVK MGESFVLELV WENTVPRPRF VPGKHGNKLH VDPKTNVFLY QLVGTWGQLL FPKPWKEFRL WYDEHKSKDM KPFLDGMVTN GCIVSSATKN LDFIHLVKEL VERKGKMIKT VETMSIAENN NANSVNQSLG DGKPVVYWSP EVDSNIIRTK LEELKLWLID DDLSCKAVIC HSSLR // ID M4ETE4_BRARP Unreviewed; 1157 AA. AC M4ETE4; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032075.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032075.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032075.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032075.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032075.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032075.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra032075.1; Bra032075.1-P; Bra032075. DR Gramene; Bra032075.1; Bra032075.1-P; Bra032075. DR InParanoid; M4ETE4; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 9. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 9. DR SMART; SM01019; B3; 9. DR SUPFAM; SSF101936; SSF101936; 9. DR PROSITE; PS50863; B3; 9. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 148 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 282 378 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 430 527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 531 628 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 649 743 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 782 879 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 906 1003 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1055 1152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 282 378 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 430 527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 531 628 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 649 743 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 782 879 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 906 1003 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1055 1152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1157 AA; 131091 MW; A62E1335254CABEF CRC64; MNNSEKEVKT EDDSSSSDHP CPLALVTASN VRKPTQYLSV PFMRANGMTK PGMITLVGKD GEKWKVNLKE EASGSALCLG TGWKEFAKAN GLKTGEYFTL ESAWKNEIPM LSLVNTESAS DRKERGESSK AMEKESTDTS SVVQNRVVVT LALETKDVKA CTLTIPVAFL KHIEGTNEHH KAKLRSDASK ITWEVKIEDG RRLTNGWKEF ALAHDLRIGD ILIFRQEKDL AFHVTLLGPS GCEIQYESCS EEKNNIGNIP KKKKVKKNPR KETESTSLDP SCFVAYVSPA TLRHDKLNLP RSFVRANGLE KRCGDIVLMN EKCKSWTLAL KQELCGNTYI RRGWRSFCTA NGLKTGSLYS FKLIKRGRSP VLRLSSTESE LEEESSEGDE VESLSTEPES DEGTTTNLEN IQRKKNLNGD AESSSLDHAC YVANVTPSSL QDDRLTLPKS FVKANGLETR CGEIVLINEK GISWKLNLKP KRSCGTMYIT RGWRSFCRVN GLRAGSFFTF KLIQRRGTLV LRLSSQFENK FVTLTLNPSN LTSYPLFLPL HFTKRHGINE KTKMTLLDKN GVKWFTNLRS EKTSDRVRLV GGWQDFFEAN CVEIGESIVL KLIWEGDKSC VLKFWSNVSL SSGLSSRDSE LLKFMRMPNK RFFKPLVPGF HSHLTIPVAF FLKYIEGRNE HKNTARLRSD ASKITWEVKI EDGQKLTDGW KEFAIAHDLH IGDILIFRQE KDMAFHVTLL GPSGCEFQYE SCSEEENNLG RNIPKKMNSK REAESSSLDP SCFLATIWPS SLRYDTLNLP RSFVRSNGLE TRCGGEIVLM NEKGKSWTSA LKQKLSGSTY IRRGWRRFCS ANVLKTGGVY TFKLIHSGRT PVLRLFFTES EPESEERNFE KIQRKKAETS SQDPSCFVAN ITRATLRYDT LGLPMKFSRE NGLDTRCGEI VLMNDKGRTW KLTLKRKKSC GTMYITQGWR SFCSANGLRA GSFFTFKLIK RGGTLVLRLS PKEREDEEDC SPKANEVESL STESESDEES SQNEKQIKKH RSTRKASSSL SQNLFVTLTL KPYDVKKYRL YLPVRFSRSH GINEEAKMTL LDKNGVKWST DLRSEETSDR IRLVGGWQEF FKANCVKPGE SIIVKLIWEG DKSCVLKFCS KVKHETK // ID M4ETE5_BRARP Unreviewed; 246 AA. AC M4ETE5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032076.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032076.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032076.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032076.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032076.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032076.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR PRIDE; M4ETE5; -. DR EnsemblPlants; Bra032076.1; Bra032076.1-P; Bra032076. DR Gramene; Bra032076.1; Bra032076.1-P; Bra032076. DR InParanoid; M4ETE5; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 148 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 26673 MW; D74824FC811729E9 CRC64; MNISETKVKT EVDSSSSDHP CPLALVTASN VRKDTQYLSV PFMRANGMTK PGLITLVGKD GAKWKVNLYE EKSGSSLCLG KGWKDFAKAN GLKTGEYFTL ESAWKNEIPM LSLVNTESAS DGKERGESSK AMEKERSTDT SSIVQNRVVT LALETKDVKA CTLHLPSEFV TAVGIKKLGE ITLLGRDGMK WCGCLLSRDG TVAVGVGWRN FCEANGVKLG DSFSLVFINE EEDTGPVFKF SPNSGN // ID M4ETE6_BRARP Unreviewed; 496 AA. AC M4ETE6; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032077.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032077.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032077.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032077.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032077.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032077.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra032077.1; Bra032077.1-P; Bra032077. DR Gramene; Bra032077.1; Bra032077.1-P; Bra032077. DR InParanoid; M4ETE6; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 121 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 398 496 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 121 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 398 496 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 496 AA; 56734 MW; EF864F9EC84D46B3 CRC64; MLLQTIPVAF FLKYIEGTNE HHTAKLRSDA SMITWEVKIE DGKKLTEGWK EFALAHDLRI GDILIFRQEK DMAFHVTLLG PSGCEIQYES CSEEENNLGK IPKKMNSKRE AESSSSLDPS CFKTNIWPSS LRYDTLNLPK SFVRANGLET SCGGEIVLMN EKGRPWTLVL KQKLSGTTYI RRGWRRFCIA NRLKTGGVYT FKLIQSGRTP VLLLSSKESE SESESEERNF EKIQRKKAES SSLDPSCFVA NISRATLRYD TLGLPMKFSR ENGLEARCGE IVLMNEKGRS WKLNLKRKIS CGTMYITQGW RSFCSANGLR AGSSSTFKLI KRGGTLALRL SSKETEEEEE EDCSLKAIEV ESLSTEPESD EESSQDDEKI KKHRSTWKAS SSQSQNRFVT LTLRPFNLEK YSLFLPLRFT RWHGINEETK MRLLDKNGVK WSTDLRSEKT NIDKIRLVGG WQEFFKANCV KTGESIMLKL IWEGDKRCVL KFFSKV // ID M4ETE7_BRARP Unreviewed; 373 AA. AC M4ETE7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032078.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032078.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032078.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032078.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032078.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032078.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra032078.1; Bra032078.1-P; Bra032078. DR Gramene; Bra032078.1; Bra032078.1-P; Bra032078. DR InParanoid; M4ETE7; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 139 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 139 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 373 AA; 42711 MW; A57AA3F06E598AD8 CRC64; MANQHFFKPL LPGFYSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL TDGWKEFALA HDLRVGDIVI FRQEKDMAFH VTLFGPSCCE IQYGACLDDK NKLVKIQSKK EVKKNNKREA ESCTLDPSSY VVNVTPSSLR YDMLYIPKIF ARANGLETRS GEIVLMNEKG TSWTLNLKQK SSCGTMYITR GWRRFCRVNG HRAGSFFTFK LIQRGGTLVL RKSPSSTESE DSSEGDEIEP LSTESKSFKK TSSMWKASSS PFQNLFVTLT LKPYEVEKST LYLPVQFTRR HSINEETRMT LLDKNGVKWS TDLRSEKRSD KIRLVGGWKE FFKANCVEMG ESIIVKLIWD GDTSCVLKFC SKV // ID M4ETE8_BRARP Unreviewed; 236 AA. AC M4ETE8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032079.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032079.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032079.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032079.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032079.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032079.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra032079.1; Bra032079.1-P; Bra032079. DR Gramene; Bra032079.1; Bra032079.1-P; Bra032079. DR InParanoid; M4ETE8; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 141 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 236 AA; 26989 MW; 74CCC3E226BBA8BB CRC64; MEGRNDHKNT AKLRSEASEM TWKVNIEDGR RLTEGWKEFA LAHDLRVGDI VIFRQERDMS FHVTLLGPSC CEIQYGSCID QDNNLGTPLK KNPKREKAES SCFVANVTPS NLRYDRLESD EDSNHISSQE RIEREDKKGG FVTLTVKPSD FKNSRLYLPM AFTKDNGINA ETKLALLDKN GVKWSTDLRS ECNGKRIRMI GGWKKFFKAN FLKIGEPIMF KLIWDGNTSC VLKLCS // ID M4EU04_BRARP Unreviewed; 220 AA. AC M4EU04; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032286.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032286.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032286.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032286.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032286.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032286.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra032286.1; Bra032286.1-P; Bra032286. DR Gramene; Bra032286.1; Bra032286.1-P; Bra032286. DR InParanoid; M4EU04; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005886; C:plasma membrane; IEA:EnsemblPlants. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0034613; P:cellular protein localization; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009409; P:response to cold; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 220 AA; 25273 MW; B79AA4C75071DDA2 CRC64; MDSAQNEFNK RARLFEDRQK EETRVTHPLI PKSNAPLNEG YEGSTTTQSL FTDSKPEVAT PKVPKKRGRK KKNPNPEEIN SSTPENSSKF YKSASDRKRT VTAEERERAI SAAKTYEPTN PFFRVVLRPS YLYRGCIMYL PSGFAEKYLS GIAGFIKLQL GEKQWPVRCL YKAGRAKFSQ GWYEFTLENN IGEGDVCVFE LLRTRDFVLK VTAFRVTQYV // ID M4EVQ7_BRARP Unreviewed; 354 AA. AC M4EVQ7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032890.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032890.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032890.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032890.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032890.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032890.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra032890.1-P; -. DR EnsemblPlants; Bra032890.1; Bra032890.1-P; Bra032890. DR Gramene; Bra032890.1; Bra032890.1-P; Bra032890. DR InParanoid; M4EVQ7; -. DR OrthoDB; EOG09360FID; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 258 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 354 AA; 40392 MW; C6E55313888BF862 CRC64; MDNFLPFSSS NANFVQELSM DLNNNRSRLS TFPTYDHHHQ AQPRSLQPYS YVACPVDQTA AMNPQIPVTQ TGSEFGSLVC NPGFGQARGG FLDPHTAKMA RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY PSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVD MRDADSMQNW FWSNNKSRMY VLENTGQFVT EKRVEIGDFL TIYEDESKNL YFSIRKHADK PNEGREDESM EANDMNFYED IAFDFIPKDE DEDSIAMLIG NLNDHYPNPN NRMDLPIDLH QHHQATSLPP ADYMTNPQYG GSSNDLMSFN DFVW // ID M4EVX0_BRARP Unreviewed; 308 AA. AC M4EVX0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra032953.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra032953.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra032953.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032953.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra032953.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra032953.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra032953.1-P; -. DR EnsemblPlants; Bra032953.1; Bra032953.1-P; Bra032953. DR Gramene; Bra032953.1; Bra032953.1-P; Bra032953. DR InParanoid; M4EVX0; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 197 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 197 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34841 MW; D3D915825FF63223 CRC64; MMMDEAHDVE TKASALIAGV HHRPGFGSGS GHVHGLSASV PLLGVNWKRR RMPRQRRSSS SLNLLSFPTL PPSSSHVPTP LPARKIDTRR LRFLFQKELK NSDVSSLRRM ILPKKAAEAH LPALESKEGI PIKMEDLDGL HVWTFKYRYW PNNNSRMYVL ENTGDFVNAH GLQQGDFIMV YQNLYPNNYV IQARKASEEE NLTSFEEDDV YTDLTKIENT VVNDLLIQDY NHHYNSDNGK CSYYYPIIDD VTATATTASF VYDTTALTSN DTPLDFLGGL TMRTNNYYSK VGSFEGFGSV ENISLDDF // ID M4EWV9_BRARP Unreviewed; 344 AA. AC M4EWV9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra033294.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra033294.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra033294.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra033294.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra033294.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra033294.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra033294.1; Bra033294.1-P; Bra033294. DR Gramene; Bra033294.1; Bra033294.1-P; Bra033294. DR InParanoid; M4EWV9; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 158 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 158 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 344 AA; 38879 MW; 3C7228B163D19101 CRC64; MDLSLAPTSS DQEQDKDQEL ASNIGASSSS GTANNTNFPM MMIPPPEKEH MFDKVVTPSA VGKPNRLVIP KQHAERYFPL DSTNNQNGTL LNFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG IGDESQRSKL YIDWRHRPDM SLVQTHQFGN YGFNFNFPTT SQYSNRFHPL PEYNSVPIHR SLNIGNHQRS YYNNQRQEFV GYGFGNLAYY TGSPLDQRSI VGSEPLVIES VPVVPGRLPP VMMLPPPLPP PPSTAGKRLR LFGVNMECGN DYDQHEESLL VPRGEMGASS SSALRFNLSN DHDDGDDDQF AKKGKSSFSL DFSP // ID M4F0I2_BRARP Unreviewed; 108 AA. AC M4F0I2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra034577.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra034577.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra034577.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034577.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra034577.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034577.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra034577.1; Bra034577.1-P; Bra034577. DR Gramene; Bra034577.1; Bra034577.1-P; Bra034577. DR InParanoid; M4F0I2; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 108 AA; 12564 MW; 927DF81CFA6C3F89 CRC64; MSPLCFVLRI LWKMANPHEP HFFKPLLPGF HDGVTIPLSF FSQHIQGKTN GKKWKLRSDA SDQTWEVIQE GRRLTGGWKD FTTAHDLQIG DILVFKHERD MVFKTCII // ID M4F155_BRARP Unreviewed; 249 AA. AC M4F155; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra034801.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra034801.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra034801.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034801.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra034801.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034801.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra034801.1; Bra034801.1-P; Bra034801. DR Gramene; Bra034801.1; Bra034801.1-P; Bra034801. DR InParanoid; M4F155; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 28407 MW; 525C1AC25663A2A0 CRC64; METPREPHFF KPLLPGFHSG VAIPLDFYSK HIQGAEINKP WKLRADASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GSIASTSRN // ID M4F182_BRARP Unreviewed; 258 AA. AC M4F182; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra034828.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra034828.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra034828.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034828.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra034828.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034828.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra034828.1; Bra034828.1-P; Bra034828. DR Gramene; Bra034828.1; Bra034828.1-P; Bra034828. DR InParanoid; M4F182; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 258 AA; 28938 MW; 73AC6E133C3D644D CRC64; MSVNHYSNTL SSHNHHNEHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGGD VTAESTEKGV LLSFEDESGK SWKFRYSYWN SSQSYVLTKG WSRYVKDKHL NAGDVVLFQR HRFDIHRLFI GWRRRGEASS SSAVSAVTQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI HQEYSHYGPV AETPTVAAGS SKTVRLFGVN LECHSDVVEP PPCPDAYNGQ HIYYYSTPHP MNISFAGEAM EQVGDGRG // ID M4F1C3_BRARP Unreviewed; 323 AA. AC M4F1C3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra034869.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra034869.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra034869.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034869.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra034869.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra034869.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra034869.1; Bra034869.1-P; Bra034869. DR Gramene; Bra034869.1; Bra034869.1-P; Bra034869. DR InParanoid; M4F1C3; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A05. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 76 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 110 206 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 224 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 76 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 110 206 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 224 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 36837 MW; D319B7149F1874C1 CRC64; MTFFSKHIRG TTNEDNAVVT LTSDASDKTW EVKMDGRRLT RGWQNFANGH GLRVGDIVIF RRDGDLLFHV TSFGPSCCQI LYDDVIQVFS DSEKYHQDTR EEGSPSDNSC FVARVTASNL SRDMLFLPRG FSRSNGLTNR KCEIILLNED GKPWKVFMSY HKTHGRVYIR TGWRRFCRQN RRRSNDLLTF KLVETGTKPV LQLCSSVYNR DCLRDSSSTS QDRFLTLTLT PYSLRKSKLC LPAAFLKSNG ITNARKIILV DRYGIKRTTS LKPDNNNGAM RMGKGWRELC KANGVKAGES FTLELIKEEG ETATHLLKFC TKV // ID M4F232_BRARP Unreviewed; 261 AA. AC M4F232; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra035129.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra035129.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra035129.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035129.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra035129.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035129.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra035129.1-P; -. DR EnsemblPlants; Bra035129.1; Bra035129.1-P; Bra035129. DR Gramene; Bra035129.1; Bra035129.1-P; Bra035129. DR InParanoid; M4F232; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 29805 MW; 3B3EC8387D055A7C CRC64; MVESEYEQIR LKRVEENKKR MIELNLNKLS QSLRLSSPSP KPSPAKARTP RTPVDSSEVR RSSRAKNPPP SYKEFGLEPL DRPRRSYQRR DLLNRVYASD DARVYAIERA EALQSSLEPE FPSFIKPMLQ SHVTGGFWLG LPRQFCHTHL PKYDEMITLV DENEDESVTK YLADKNGLSG GWRGFAIDHQ LVDGDAVVFH LINPTTFKVY IIRVNDESSN GLGGSNGKEL VIKSNKNQEE KKVSEVHPLS NSGKRKRRGR M // ID M4F2M5_BRARP Unreviewed; 225 AA. AC M4F2M5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra035324.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra035324.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra035324.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035324.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra035324.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035324.1-P}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra035324.1-P; -. DR EnsemblPlants; Bra035324.1; Bra035324.1-P; Bra035324. DR Gramene; Bra035324.1; Bra035324.1-P; Bra035324. DR InParanoid; M4F2M5; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000011750; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 225 AA; 25407 MW; 761050AFFE3BF517 CRC64; MVVAKQSPYE EFRLRRVEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV RRSSRISNAS SSSPVYKEAS CCSTSASTQK GRDLSNRVYV SEEIREEAFS KAEKLQADLR NRFPSFVKSM LQSHVSGGFW LGLPVHFCRS ELQKQDGVIT LIDEEGEEFE TVYLAKRTGL SGGWLGFAVS HNLVYGDALV FELVRPTVFK VYITRVKSSG ESPKM // ID M4F4E9_BRARP Unreviewed; 119 AA. AC M4F4E9; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra035949.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra035949.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra035949.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035949.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra035949.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035949.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra035949.1; Bra035949.1-P; Bra035949. DR Gramene; Bra035949.1; Bra035949.1-P; Bra035949. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13347 MW; 8512CB7E3B19331E CRC64; MRIEVSCGVH GLEFIGPTMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GSIASTSRN // ID M4F4F0_BRARP Unreviewed; 240 AA. AC M4F4F0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra035950.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra035950.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra035950.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035950.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra035950.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035950.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra035950.1; Bra035950.1-P; Bra035950. DR Gramene; Bra035950.1; Bra035950.1-P; Bra035950. DR InParanoid; M4F4F0; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 118 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 118 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 240 AA; 27390 MW; 67FA66041FF9033E CRC64; METPREPHFF KPLLPGFHSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EILWSDADDA PTFSYDYCFL AEVTPTNQKD DKMFLPVEAM RCGALNQQCK EVKLVNKEGK SWTARFGFSE SDGAYYISRG WRKFCRDNRC TNGDLFVFNV VGDGTTTPLL CVCPERKECT ELLIKHFSRI DGSIASTSRN // ID M4F4G2_BRARP Unreviewed; 224 AA. AC M4F4G2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra035962.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra035962.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra035962.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035962.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra035962.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra035962.1-P}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra035962.1; Bra035962.1-P; Bra035962. DR Gramene; Bra035962.1; Bra035962.1-P; Bra035962. DR InParanoid; M4F4G2; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 25381 MW; D854F3E1D7F36B53 CRC64; MANPHEPHFF KPLLPGFHSG ITIPLAFFSK HIEGKTNQKT WKLRSDASDQ TWEVIQEGRT RTGGWKYFTT AHDLQIGDLV IFKHKRDMVF HVIPFGPSCC EIQFTHPHII KEEADAGDAD DIEIRGTGAM SSFSFDYCFL AEVTASNLKA DKLYLPKRAT SSTALNKQCQ EMILVNKEGN SWTASLRFSE SGGMYYITRG WRKFCRDNKC DIGDLFVFNL VGDG // ID M4F4R2_BRARP Unreviewed; 271 AA. AC M4F4R2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra036063.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra036063.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra036063.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036063.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra036063.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036063.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra036063.1; Bra036063.1-P; Bra036063. DR Gramene; Bra036063.1; Bra036063.1-P; Bra036063. DR InParanoid; M4F4R2; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 31115 MW; 623A03C1024F3560 CRC64; METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTATNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GKSSHLTCLC CLYLQCYYFA SALTCVLFFY R // ID M4F4R3_BRARP Unreviewed; 249 AA. AC M4F4R3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra036066.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra036066.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra036066.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036066.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra036066.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036066.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra036066.1; Bra036066.1-P; Bra036066. DR Gramene; Bra036066.1; Bra036066.1-P; Bra036066. DR InParanoid; M4F4R3; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 28388 MW; C6C1613736F5BCD2 CRC64; METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTATNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID GSIASTSRN // ID M4F4R4_BRARP Unreviewed; 162 AA. AC M4F4R4; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra036068.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra036068.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra036068.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036068.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra036068.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036068.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra036068.1; Bra036068.1-P; Bra036068. DR Gramene; Bra036068.1; Bra036068.1-P; Bra036068. DR InParanoid; M4F4R4; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 162 AA; 18303 MW; 7E4618F67A49AFD4 CRC64; MVFHVTPFGP SCCDIQYTHP HIVKEEADAD DAPTFSYDYC FLAEVTATNQ KDDKMFLPVE AMRCGALNQQ CKEVKLVNKE GKSWTARFGF SESDGAYYIS RGWRKFCRDN RCTNGDLFVF NVVGDGTTTP LLCVCPERKE CTELLIKHFS RIDGSIASTS RN // ID M4F5X7_BRARP Unreviewed; 312 AA. AC M4F5X7; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra036483.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra036483.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra036483.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036483.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra036483.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036483.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra036483.1; Bra036483.1-P; Bra036483. DR Gramene; Bra036483.1; Bra036483.1-P; Bra036483. DR InParanoid; M4F5X7; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 72 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 295 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 72 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 295 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 35273 MW; AAF4430380C8DC23 CRC64; MVPIPYLKSP NQTRFPLIFG KPFPLSTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH DHQNNRTGAR FSYSWDYCFK AEVTDSNVRE DKLNLPVGAT GCNALNKECK KAKLVNIEGK AWNVSMRFNE SGGFYYIKGW RKFCAENKCH IGDSFVFNVV GDGNTLPLMC VCSPSKECLK SAGDIASSSR VN // ID M4F5X8_BRARP Unreviewed; 246 AA. AC M4F5X8; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra036486.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra036486.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra036486.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036486.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra036486.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra036486.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra036486.1; Bra036486.1-P; Bra036486. DR Gramene; Bra036486.1; Bra036486.1-P; Bra036486. DR InParanoid; M4F5X8; -. DR Proteomes; UP000011750; Chromosome A07. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 132 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 132 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 27865 MW; 6F058890B418271A CRC64; MVQPQEPHFF QPLLPGFQTH LTIPIVFFSK HIQGKTNGNT WTLTSDAMDQ TWQVIQEERR LTRGWKEFAE AHDLRIGDIV IFKLKGSMVF HVTPFGPSCC DIQYTYPNSM EEAHDHQNNR TGARFSYSWD YCFKAEVTDS NVREDKLNLP VGATGCNALN KECKKAKLVN IEGKAWNVSM RFNESGGFYY IKGWRKFCAE NKCHIGDSFV FNVVGDGNTL PLMCVCSPSK ECLKSAGDIA SSSRVN // ID M4F7F0_BRARP Unreviewed; 651 AA. AC M4F7F0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037010.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037010.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037010.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037010.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037010.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037010.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra037010.1; Bra037010.1-P; Bra037010. DR Gramene; Bra037010.1; Bra037010.1-P; Bra037010. DR InParanoid; M4F7F0; -. DR OrthoDB; EOG09360OOH; -. DR Proteomes; UP000011750; Chromosome A03. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR005692; Tic22. DR InterPro; IPR007378; Tic22-like. DR PANTHER; PTHR33926; PTHR33926; 1. DR Pfam; PF02362; B3; 2. DR Pfam; PF04278; Tic22; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR TIGRFAMs; TIGR00995; 3a0901s06TIC22; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 290 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 545 643 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 290 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 545 643 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 651 AA; 73614 MW; C7EED9B7075BB327 CRC64; MEPSLKPNPF LSFSSFLHTH CNRFASDLSA RFEDTKRFAE SLTTRRFTPP PFASVSQYPK PSAGTSTATL NPSHVAKALA GTSVFTVSNT NNEFVLISDP AGDKSIGLLC FRQEDAEAFL AQARLRRREL KANAKVVPIN LDQVYLLKVE GISFRFLPDP IQIKNAMELK SSASKNGFDG VPVFQSELLV VRKKNKRYCP VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMERS EKNSGWEDII FIPPGRSYAQ HMQEKKKKME ENCEDCMRWE EQLYWNHFQT VHFSQLLLPG FHNRLAIPKK FSTYCKRKLA KIVTLKSPSG TKYNVGLEED DEKTLAFRCG WDKFVKDHSL HESDLLVFKF NGSSEFEVLI FDGDTLCEKP TSYFVRKCGH AAEKTSRVTD FTATSSRSPK RYISIADDVE TTVKISPVGN ELDDLIDIDT MLPQTGTDQE EHSNSDIDTD SGQLPVISPT SKGPISEGKY PIGVFKKMRG QISINDPDRK ADVEMIPGGS RKRIGEINKK KALSLAKRAV STKGFLVVMK RSHVVSKCFL YVPVQWSARN MSREPQDVVM QVGERKWHLK FKYYGSKGRG GVSVGWKKFV RDNNLCEGDV CVFEPAKPEA KPFHLDVYIF RAAEAESSNN G // ID M4F7S1_BRARP Unreviewed; 301 AA. AC M4F7S1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037132.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037132.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037132.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037132.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037132.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037132.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra037132.1-P; -. DR EnsemblPlants; Bra037132.1; Bra037132.1-P; Bra037132. DR Gramene; Bra037132.1; Bra037132.1-P; Bra037132. DR InParanoid; M4F7S1; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 301 AA; 34726 MW; 048281419A679500 CRC64; MVERSEKGKD MEFFKVCLPE FSSRKLVIPP AFVNILEKPL PNQVVLLDEI GRLWNVETKT EEGVGDVVFK KGWEKFANDH SLEFGDFLVF SYDAVSRFSV KIFDKNGCKK YLVAVTTADR SRVAVEKEPV LVKPVDDIST KRCGKSRKRV PVKEEPSGNR VKDPCEMGCV PENKKHKGFE EPNYKPKNPH FVRNITLCFR QMEIPTSFLK WNGIEMEEDF ELCDENGKKW PMKVVIHDRG QRFSPGLWLS FCRSHKLSTS NKCLFEFIVR SDGTCNQVLV RIFRGRMLTT VTINGYQVLV M // ID M4F820_BRARP Unreviewed; 248 AA. AC M4F820; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037231.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037231.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037231.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037231.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037231.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037231.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra037231.1; Bra037231.1-P; Bra037231. DR Gramene; Bra037231.1; Bra037231.1-P; Bra037231. DR InParanoid; M4F820; -. DR OrthoDB; EOG09361FRO; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 128 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 128 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28131 MW; 51DAE67AB6A9312C CRC64; MGNPQEPHFL KPLLPGFHNG VTIPLSFFSQ HIQGKTNGKK WKLRSDASDQ TWEVIQEGRR LTGGWKDFTT AHDLRIGDIL VFKHEGDMVF HVTPFGPSCC EIQFTHPHSI KEEADVDDTH SFSFDYCFLA EVTASNINED KLYLLVEATT CTALNKQLKE IILVNKEGNS WTASLRYSEA DDMFYIRKGW REFCEENICT IGDLFVFNVV GDGNTTPLMC VCPERKECSE LLIKHLSIMN GDLLLAHG // ID M4F8K5_BRARP Unreviewed; 310 AA. AC M4F8K5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037417.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037417.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037417.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037417.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037417.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037417.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra037417.1; Bra037417.1-P; Bra037417. DR Gramene; Bra037417.1; Bra037417.1-P; Bra037417. DR OrthoDB; EOG09360IMA; -. DR Proteomes; UP000011750; Chromosome A09. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 35687 MW; E9A5F73A5CB1FA5B CRC64; MASGSGSNSN DFNMAMGEHM FDKVLTTSDV GKLNRLVIPK QHAENYFPLE EIENGTMLEF QDRNGKMWKF RYLYWSSSQS YVMTKGWVRF VKDKNLESGD TISFHRSYVP DDTEPGKRIK KLYVDWRHRA DRNLVHNINH HHHYPLLMPP TYPTAGYYPL SGYSMPHYQR LPPFYHNQFQ ERDFSGYGYG GPYYARSPLD HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS ARLPPYPPPH QPPQEGTAKK LRLFGVDVEE SSSSGEARGE MAVAGYSSSS PVVIRDEESS SAMQLSEDEE YKRKGKSIDF // ID M4F8U1_BRARP Unreviewed; 163 AA. AC M4F8U1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037503.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037503.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037503.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037503.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037503.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037503.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra037503.1; Bra037503.1-P; Bra037503. DR Gramene; Bra037503.1; Bra037503.1-P; Bra037503. DR InParanoid; M4F8U1; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 163 AA; 18688 MW; B8E44525C1E493C6 CRC64; METPREPHFF KPLLPGFHSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTPTNQKDD KMVALLLPHE IRWLFCGLSS LSS // ID M4F8U2_BRARP Unreviewed; 146 AA. AC M4F8U2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037504.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037504.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037504.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037504.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037504.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037504.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra037504.1; Bra037504.1-P; Bra037504. DR Gramene; Bra037504.1; Bra037504.1-P; Bra037504. DR InParanoid; M4F8U2; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 146 AA; 16792 MW; 1FA6A70D956BBFDB CRC64; METPREPHFF KPLLPGFHSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP TFSYDYCFLA EVTPTNQKDD KMVSKI // ID M4F8U5_BRARP Unreviewed; 197 AA. AC M4F8U5; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037507.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037507.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037507.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037507.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037507.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037507.1-P}; RG EnsemblPlants; RL Submitted (JUL-2014) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra037507.1; Bra037507.1-P; Bra037507. DR Gramene; Bra037507.1; Bra037507.1-P; Bra037507. DR InParanoid; M4F8U5; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000011750; Chromosome A06. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 167 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 167 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 197 AA; 21983 MW; 6E76CC7C36CC5FE7 CRC64; MDGRVFGLVT RKTLVILDRS RKKKRIPTKK GDCSLDKAKA NPRRQTVIPA AKDGDLSPSA EQGKSHPSDM ANPHEPHFFK PLLPGCHSGV TISLAFFLKH IEGKTNQKTW KLRSDASDQT WEVIQEGRTL TGGWKDFTTA HDLRIGDLVI FKHEGDMVFH VTPFGPSCCE IQYTHPHIIK EEADAGDADD NEISKSQ // ID M4F8Y2_BRARP Unreviewed; 342 AA. AC M4F8Y2; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037544.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037544.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037544.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037544.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037544.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037544.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra037544.1-P; -. DR EnsemblPlants; Bra037544.1; Bra037544.1-P; Bra037544. DR Gramene; Bra037544.1; Bra037544.1-P; Bra037544. DR InParanoid; M4F8Y2; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000011750; Chromosome A01. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 339 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 339 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 342 AA; 39559 MW; 005DB8744E8F7924 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSTGL MDSAHNHFKR ARLFEDLEDE DVEVVHPSSL YPLQHPETTG HANKGHTSSA IQSFFAEPVK AEETTPTPKV PKKRGRKKKN ADPEEINSSA PRDDDPENRS KFYESASARK RTVTAEERER AINAAKTFEP TNPFFRVVLR PSYLYRGCIM YLPSGFAEKY LSGISGFIKV QLGEKQWPVR CLYKAGRAKF SQGWYEFTLE NDLGEGDVCV FELLRTRDFV LKVTAFRVNE YV // ID M4F9A0_BRARP Unreviewed; 257 AA. AC M4F9A0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra037663.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra037663.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra037663.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037663.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra037663.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra037663.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra037663.1; Bra037663.1-P; Bra037663. DR Gramene; Bra037663.1; Bra037663.1-P; Bra037663. DR InParanoid; M4F9A0; -. DR OrthoDB; EOG09360N6X; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 163 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 163 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 28864 MW; 64650A0115EBBD64 CRC64; MARNIAFGRI QEDVNKTSFF KILADEDLSS ESMRLIPNEF WRSSECKILP PKVTLKVAWG SSWPVNLSPF MGCYLMERKG WEEFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCVEILK PLNTSSSNVK NEEMSCVDPV IAESNKRKVD SNVYGASSSS SSAATFSLTI KKSHLTLLSI PVTFAKEHMP KVRTKFVIHD PKGKPWEVVY VPSNGSKLFS SGWRFLANGY GLAVGDLCTF RLVRPKEMVL EVLHASP // ID M4FB80_BRARP Unreviewed; 350 AA. AC M4FB80; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra038346.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra038346.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra038346.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra038346.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra038346.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra038346.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra038346.1-P; -. DR EnsemblPlants; Bra038346.1; Bra038346.1-P; Bra038346. DR Gramene; Bra038346.1; Bra038346.1-P; Bra038346. DR InParanoid; M4FB80; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000011750; Chromosome A02. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 189 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 189 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39060 MW; 56BF4707D1D7FCA4 CRC64; MVFSCIDESS STSESFSPAT ATATATATKF SAPPLPPLRL NRMRSGGSNV VLDSKNGVDI DSRKLSSSKY KGVVPQPNGR WGAQIYVKHQ RVWLGTFCDE EEAAHSYDIA ARKFRGRDAV VNFKTFLASE DDNGELCFLE AHSKAEIVDM LRKHTYADEL AQSNKRSGAN TNTNTTQSHT VSRTREVLFE KVVTPSDVGK LNRLVIPKQH AEKYFPLPSL SVTKGVLINF EDVTGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVTFERSTGS DRQLYIDWKI RSGPSKNPVQ VVVRLFGVDI FNVTSAKPSN VVDACGGKRS RDVDMFALRC SKKHAIINAL // ID M4FCX3_BRARP Unreviewed; 108 AA. AC M4FCX3; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra038943.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra038943.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra038943.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra038943.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra038943.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra038943.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra038943.1; Bra038943.1-P; Bra038943. DR Gramene; Bra038943.1; Bra038943.1-P; Bra038943. DR Proteomes; UP000011750; Chromosome A08. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 108 AA; 12282 MW; E82C8F8072F9511E CRC64; MSSFSFDYWF LAEVTASNLK EDKFYLPVGA TSSTALHKQC QETILVNKEG DSWNVSLRFS ESGGKYYITR GWRKFCLDNR CEIGNLFAFN VVGDGKTTPL MCVCPERK // ID M4FHA0_BRARP Unreviewed; 293 AA. AC M4FHA0; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 10-MAY-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra040478.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra040478.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra040478.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra040478.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra040478.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra040478.1-P}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; Bra040478.1; Bra040478.1-P; Bra040478. DR Gramene; Bra040478.1; Bra040478.1-P; Bra040478. DR InParanoid; M4FHA0; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000011750; Chromosome A04. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 32991 MW; 939816B2348706BA CRC64; MMTNLSLARE GEAQVKKPIE EVEREHMFDK VVTPSDVGKL NRLVIPKQHA ERYFPLDSSS NEKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRCVGDS RLFIDWRRRP KVPDYPTSTA HFAAGAMFPR FYSFPTATTS TCYDLYNHQP PRHHHIGYGY PQIPREFGYG YFVRSVDQRA VVADPLVIES VPVMMRGGAR VSQEVVGTAG KRLRLFGVDM EEESSSSGGS LPRAGGGGAS SSSSLFQLRL GSSCEDDHFS KKGKSSLPFD LDQ // ID M4FIU4_BRARP Unreviewed; 264 AA. AC M4FIU4; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra041023.1-P}; OS Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica OS pekinensis). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; OC Brassica. OX NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra041023.1-P, ECO:0000313|Proteomes:UP000011750}; RN [1] {ECO:0000313|EnsemblPlants:Bra041023.1-P, ECO:0000313|Proteomes:UP000011750} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra041023.1-P, RC ECO:0000313|Proteomes:UP000011750}; RX PubMed=21873998; DOI=10.1038/ng.919; RG Brassica rapa Genome Sequencing Project Consortium; RA Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H., RA Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X., RA Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B., RA Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B., RA Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C., RA Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F., RA Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H., RA Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H., RA Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J., RA Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J., RA Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M., RA Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R., RA Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S., RA Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X., RA Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y., RA Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.; RT "The genome of the mesopolyploid crop species Brassica rapa."; RL Nat. Genet. 43:1035-1039(2011). RN [2] {ECO:0000313|EnsemblPlants:Bra041023.1-P} RP IDENTIFICATION. RC STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra041023.1-P}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR STRING; 3711.Bra041023.1-P; -. DR EnsemblPlants; Bra041023.1; Bra041023.1-P; Bra041023. DR Gramene; Bra041023.1; Bra041023.1-P; Bra041023. DR InParanoid; M4FIU4; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000011750; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000011750}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000011750}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 264 AA; 30058 MW; 134298DE23A0E112 CRC64; MSGNHYSRDI HHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST SSYPNIHQEY SHYGAVAEIP TVVTGSSRTV RLFGVNLECH GDVVETPPCP DGYNGQHFYY YSTPDPMNIS FAGEAMEQVG DGRR // ID M5VH34_PRUPE Unreviewed; 232 AA. AC M5VH34; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ00384.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa020124mg {ECO:0000313|EMBL:EMJ00384.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ00384.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ00384.1; -; Genomic_DNA. DR RefSeq; XP_007199185.1; XM_007199123.1. DR EnsemblPlants; EMJ00384; EMJ00384; PRUPE_ppa020124mg. DR Gramene; EMJ00384; EMJ00384; PRUPE_ppa020124mg. DR KEGG; pper:PRUPE_ppa020124mg; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 232 232 {ECO:0000313|EMBL:EMJ00384.1}. SQ SEQUENCE 232 AA; 26685 MW; 5470005EA789BB2D CRC64; KIPMKFVMKH GEHLLTPVHL KLPSGVEWEI EFRRCNNDGV WFKTRKRYRG RITKPEIEET DYEEEDDDNS VKILDGFQPC PRKAREKSPL PCPQPHKKMR ICKQGLRLLQ IRNEKAIAFE SASPSFTVVM HPSYLQKGLL TVPVGFGKRH LMKQPAGNAI LKVLDGGTWS VKFTYSKPKA QFQQGWRAFV RGNNSSDDYD LFINVDYGLF ISDLEQSEAL VLSEFSNIIS EV // ID M5VHW8_PRUPE Unreviewed; 366 AA. AC M5VHW8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ00371.1}; GN ORFNames=PRUPE_ppa021390mg {ECO:0000313|EMBL:EMJ00371.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ00371.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ00371.1; -; Genomic_DNA. DR RefSeq; XP_007199172.1; XM_007199110.1. DR EnsemblPlants; EMJ00371; EMJ00371; PRUPE_ppa021390mg. DR GeneID; 18768368; -. DR Gramene; EMJ00371; EMJ00371; PRUPE_ppa021390mg. DR KEGG; pper:PRUPE_ppa021390mg; -. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 47 138 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 47 138 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41090 MW; CE24B5F250148AB5 CRC64; MSQSHKRKRV ITRVKVESLY DSSQAQSSVM ERAKKVEASL DPKFPVLLKV MMPSHVTGGF CLSIPKKFSC QHLPKQDTMI ILEDEDGKEF ETKYLVEKGG LSGGWRGFSI AHKLLQGDIV IFHVVAPFKI KVYIVRSNGL DEVDCVHGLM RLDACTKQIN AGQIIPYETE KSGPVSDQSE NDSEDLGFEF MDGLRLAESD VTFKEVKCME NFTVVVNGLV INSEFSNYIL TKYYELCCSQ NAFLHEHLLE GLNCKLIAGV ISETVNIADA IRACKITTTE GDFSTWSKTL KAFEDLGMNS GFLRVRLDRL ASLASESKRL KEARLEKDHP EEEMTSLDAN PLEVKETINM TSILELTFQE VAKAPW // ID M5VIZ9_PRUPE Unreviewed; 391 AA. AC M5VIZ9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ01054.1}; GN ORFNames=PRUPE_ppa006275mg {ECO:0000313|EMBL:EMJ01054.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ01054.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ01054.1; -; Genomic_DNA. DR RefSeq; XP_007199855.1; XM_007199793.1. DR EnsemblPlants; EMJ01054; EMJ01054; PRUPE_ppa006275mg. DR GeneID; 18767414; -. DR Gramene; EMJ01054; EMJ01054; PRUPE_ppa006275mg. DR KEGG; pper:PRUPE_ppa006275mg; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 274 369 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 274 369 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44604 MW; 3BD80DD1444A8149 CRC64; MKNMIRPCFH KLILSSTLQA KQLMIPENFV KKFRDDLSTV ATLSVPDGNV WRVGIKKADN KFWFHDGWQE FIERYSIRVG YFLTFRYEGH SSFTVHIFNL TTAEINYQPN ALSSTGVSVY RHQVFEEMED DDSVEILGSS PKSIVTDSLR DKLFGDCANQ LIPGKDYNPP ALQNLFNGSK PKNCTNWPDT GNPHPSKGSG LQAGEDIRSM KKTMRKKRKL DPTVQDSSSQ HEKEVEIRFR FYESASARKR TVTAEERERA INAAKTFEPV NPFCRVVLRP SYLYRGCIMY LPSCFAEKNL NGVSGFIKLQ SSDGRQWPVR CLYRGGRAKL SQGWYEFTLE NNLGEGDVCV FELLKMKEVV LKVTVFCVVE AAGFVNQPPQ QNASQAKMIR N // ID M5VKU1_PRUPE Unreviewed; 359 AA. AC M5VKU1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ01456.1}; GN ORFNames=PRUPE_ppa015021mg {ECO:0000313|EMBL:EMJ01456.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ01456.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ01456.1; -; Genomic_DNA. DR RefSeq; XP_007200257.1; XM_007200195.1. DR EnsemblPlants; EMJ01456; EMJ01456; PRUPE_ppa015021mg. DR Gramene; EMJ01456; EMJ01456; PRUPE_ppa015021mg. DR KEGG; pper:PRUPE_ppa015021mg; -. DR OMA; MITETIN; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 295 343 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 359 AA; 40367 MW; 1B7316A2D6053D1D CRC64; MMPESHKRKR ATVESIYDTS QAQSSVLERA QEVEVSLDPK FPSLLKVMLP SHVTGGFWLG LPKKFCCEHL PKQDIMIALE DENGEVFETK YLADKVGLSG GWRGFSIAHK LLEGDVIVFH LVTPSKFKVY IVRSNGLDEL DGALGLMRLD ACKKMDTDHS ESESEDDVGF EVLDGLRLSE SVVTFEEVKC MDDFNVLVNG LIINSEFSKY ILNKYYELCC SQNSFLHEHL LDGLNCKLVA GVISETVNIA DAIRACNITT PEGNFSTWDQ TLKAFQGLGM NIGFLLARLD QLVSLASKSK RFKEARLEKD QAEEEMRCLE AKLFEVKEAV NRLESEIEML NTSSENPELV FQEVAKSSW // ID M5VMB0_PRUPE Unreviewed; 204 AA. AC M5VMB0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ02337.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa016432mg {ECO:0000313|EMBL:EMJ02337.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ02337.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ02337.1; -; Genomic_DNA. DR RefSeq; XP_007201138.1; XM_007201076.1. DR EnsemblPlants; EMJ02337; EMJ02337; PRUPE_ppa016432mg. DR Gramene; EMJ02337; EMJ02337; PRUPE_ppa016432mg. DR KEGG; pper:PRUPE_ppa016432mg; -. DR OMA; SGANWEV; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 128 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 128 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 204 204 {ECO:0000313|EMBL:EMJ02337.1}. SQ SEQUENCE 204 AA; 23780 MW; D507DF482D24AD11 CRC64; RVPKTFLDKC GEHLSDQIHL KLPCGSEWKI KLRRCNGEVW LGKGWPEFSE FYSLKKGNSL LFRYEGNSKF NVLIFDESGT EMDYPITITL IEETDEEKSR TNPHSSSRPS SSSSSKRVHV EAANEFVSSH PFFKVTLRKH LGMNIPASFR KHFTTVENQI VRLWVGDRSW TVKLIFHRNN DQLSAGWRAF LKENLLKKRR CLHL // ID M5VPC6_PRUPE Unreviewed; 161 AA. AC M5VPC6; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ03117.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa026741m2g {ECO:0000313|EMBL:EMJ03117.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ03117.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ03117.1; -; Genomic_DNA. DR RefSeq; XP_007201918.1; XM_007201856.1. DR EnsemblPlants; EMJ03117; EMJ03117; PRUPE_ppa026741m2g. DR Gramene; EMJ03117; EMJ03117; PRUPE_ppa026741m2g. DR KEGG; pper:PRUPEppa026741m2g; -. DR OMA; HDANIVL; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 161 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 77 161 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 161 161 {ECO:0000313|EMBL:EMJ03117.1}. SQ SEQUENCE 161 AA; 18159 MW; D7658CA82F08E17B CRC64; MAVLQNQKHS YSSDTPLPSK VQSPCFSLRP SLNLFTNSRK LKRATVESLY DTSQAQSSVL QRAKEVEASL DPKFPTLLKV MLPSHVTGCF WLGLPKKFCC DHLLKQDTMI VLEDENGEEF ETKYLAEKVG LSGGWRGFSM SHKLLEEDIV ILHVVTPSKF K // ID M5VPK1_PRUPE Unreviewed; 669 AA. AC M5VPK1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa022314mg {ECO:0000313|EMBL:EMJ02866.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ02866.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ02866.1; -; Genomic_DNA. DR RefSeq; XP_007201667.1; XM_007201605.1. DR EnsemblPlants; EMJ02866; EMJ02866; PRUPE_ppa022314mg. DR Gramene; EMJ02866; EMJ02866; PRUPE_ppa022314mg. DR KEGG; pper:PRUPE_ppa022314mg; -. DR KO; K14486; -. DR OMA; QCKNCCS; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 571 653 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 669 669 {ECO:0000313|EMBL:EMJ02866.1}. SQ SEQUENCE 669 AA; 74849 MW; 14228C73124DC401 CRC64; RERERERERE RERERLKEVK EGDTLTPLGG RGEKDDSYTR LWHACAGPNV YVPGPGEKVF YFPQGHMEQV EAYANEDGKM EMPIYNLPSK ILCNVVCVLL KAEVHTDEVF AQITLLPLTE QEQLSLDEEN NQPVPQSTST RSFSKTLTPS DTSTHGGFSV PKRQADECLP PLDMSQQPPV QELVARDLQG FEWHFRHIFR GQPKRHLLTS GWSTFVTAKR LVAGDACIFV RGENGELRVG IRRANKNQDN ASTALISGHS MQHGILASAF HANSTGTLFT VYYRPWTSPA AFIIPYDRYM KSAKNDHSIG MRFRTCFEGD ECAEKRLAGT IIGIEDNDCI RWPSSEWRCL KVQWDASSDT NLHPERLSPW NIMPLQPNKR AHVPDLISPG DPPAHEPGTQ KPPLLPQFIP PSNPDWTHTE LGLDNNPLHD PLYQCPGSAI APSLTNRWPP IFNFGVWDSV AFRRSMSVPN IKSSGSQDSR AFKPRSEIEA PLVQPNSRGT TMLFGVNIVT SHPELPSPQV VTSSELFSPC SITPISQSSV SETVQISETS KIVSGVLSAK QCKKCCSVTN RSCIKVLKYG APVGRSVDLA RFDGYGELIS ELDQMFDFKG SLIDGSSGWQ VTYMDDEGDM MLIGDYLWHE FQSMVQKLFI CPKEEIDRLN PGSPNATSL // ID M5VQI5_PRUPE Unreviewed; 303 AA. AC M5VQI5; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ03557.1}; GN ORFNames=PRUPE_ppa009186mg {ECO:0000313|EMBL:EMJ03557.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ03557.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ03557.1; -; Genomic_DNA. DR RefSeq; XP_007202358.1; XM_007202296.1. DR EnsemblPlants; EMJ03557; EMJ03557; PRUPE_ppa009186mg. DR GeneID; 18770785; -. DR Gramene; EMJ03557; EMJ03557; PRUPE_ppa009186mg. DR KEGG; pper:PRUPE_ppa009186mg; -. DR OMA; ERDANYH; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 180 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 34765 MW; 0B7DDE3E20396582 CRC64; MGRKPTKPSP KIPSFFKVLV GEFSQRLSIP PAFMYHVNGR LSPKCTLRDP SGDCWTVGLE VRGDRFFFHE GWQRFVKDHS LEIANVLVFD YDGKSKFDVT LYDPIGSEKE LEPAKKRRGN RARVKEEIIE LDTEEPDKDS EEDARMSNIR KRKSFKSGKR IARTDGGNET SNAPIVFRSK HLCFIRAMRK NRYRMNFPKE LAVAKGLIRK KSVRVEDPHG ISWDVKLRLD EKEHNGGRLL MTKGWSECCY ANNISLGDTL VFELVNAMHG GMKMHIFRGN SYVVLDASCV KYQGYVVENL ALQ // ID M5VS90_PRUPE Unreviewed; 357 AA. AC M5VS90; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04184.1}; GN ORFNames=PRUPE_ppa018806mg {ECO:0000313|EMBL:EMJ04184.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04184.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04184.1; -; Genomic_DNA. DR RefSeq; XP_007202985.1; XM_007202923.1. DR EnsemblPlants; EMJ04184; EMJ04184; PRUPE_ppa018806mg. DR GeneID; 18771487; -. DR Gramene; EMJ04184; EMJ04184; PRUPE_ppa018806mg. DR KEGG; pper:PRUPE_ppa018806mg; -. DR OMA; NTECLER; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 262 357 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 262 357 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 357 AA; 40607 MW; F7E0D35D1CC27706 CRC64; MASLHDTPTS SAPIPHFFKI ILDDTSKNIR IKIPMKFVMK YGEHLSSPVH LKLPNGAEWE IELRRCNNGG VWFDKGWPEF SKFCSLDYGN WLVFGYEGNS NFHVLIFDRT STEVEYAITK PEMEETDYEE EDDNSVEILD GFPPCPRKAR EKSPLPCPQP HKKMRTCGKA ECNINFRPTK TQTSLRNKAS DSSRSEMKKE DESDDDSVET LDAFPSCPKT RDKSPLAPSE VKDRVGRMHA STTCGKSIAL QRAIAFESVS PSFTVVMQPS YIPYGPLTLP IRFARSFVKL RKQTATLQVR ERSWPVNLIG WTKESSAKLS GGWPAFATEN CLRRGDVCTF ELIERNDIVL KVHIFRN // ID M5VSG9_PRUPE Unreviewed; 241 AA. AC M5VSG9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04307.1}; GN ORFNames=PRUPE_ppa023842mg {ECO:0000313|EMBL:EMJ04307.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04307.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04307.1; -; Genomic_DNA. DR RefSeq; XP_007203108.1; XM_007203046.1. DR EnsemblPlants; EMJ04307; EMJ04307; PRUPE_ppa023842mg. DR Gramene; EMJ04307; EMJ04307; PRUPE_ppa023842mg. DR KEGG; pper:PRUPE_ppa023842mg; -. DR OMA; DVEYNIM; -. DR OrthoDB; EOG09360NZK; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 223 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 241 AA; 27775 MW; EA52A7C9DCB920B6 CRC64; MTNGTEGAYL LLFLKHTILN PETARDLEHM KRKILSGIEL NSPSRSKRKA LRIQEPEAPR ARESTNGAAR GRSSPRELQF QQQERGGLFY GNYAPPDLPP IPSLQNLIQD CSKPFEKQLT RSDVKEDQCR LSMNKEDVEY NIMPLLRNGD NFNEGIDVTT YDMAGTEYPM VFKIWATKIH VLTGGWKTFC NDLGLVENQD FVTLWVFRHV DNGGLCFAIH SRRLPVFKPI KKRRPIRQKY H // ID M5VSN9_PRUPE Unreviewed; 258 AA. AC M5VSN9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04382.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa025156mg {ECO:0000313|EMBL:EMJ04382.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04382.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04382.1; -; Genomic_DNA. DR RefSeq; XP_007203183.1; XM_007203121.1. DR EnsemblPlants; EMJ04382; EMJ04382; PRUPE_ppa025156mg. DR Gramene; EMJ04382; EMJ04382; PRUPE_ppa025156mg. DR KEGG; pper:PRUPE_ppa025156mg; -. DR OMA; TENCLME; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 163 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 163 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 258 258 {ECO:0000313|EMBL:EMJ04382.1}. SQ SEQUENCE 258 AA; 29756 MW; EA40E2EC1C733E1D CRC64; KIPMKFLMRY GENLSSPVHL KLPSGVEMEI ELRRSNDGWV WFDKGWPEFS KLCSLDYGNS LVFGYEGNSN FSVFIFDKTA TEIEYPKPEM EETDSDFEEE EDDDDESGHA RGEIKRENDM PTKKDFGGSS STRIFLGRTH PLTKSEKALA LQRANAFESE YPYFLVAIQP VYIHRGYLHV PVTFARSFVK KRKQTVTLQV RERSWPVNLI GHTKESGAKL SGGWCEFVTE NCLMEGDVCI FELIERNDIV LKVHIFRC // ID M5VSV0_PRUPE Unreviewed; 1027 AA. AC M5VSV0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa000708mg {ECO:0000313|EMBL:EMJ04419.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04419.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04419.1; -; Genomic_DNA. DR RefSeq; XP_007203220.1; XM_007203158.1. DR EnsemblPlants; EMJ04419; EMJ04419; PRUPE_ppa000708mg. DR Gramene; EMJ04419; EMJ04419; PRUPE_ppa000708mg. DR KEGG; pper:PRUPE_ppa000708mg; -. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 900 993 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1027 AA; 113845 MW; 218133BB700CFA68 CRC64; MKAPSNGFLA TSGEGEQKRI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPNYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQSR QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMAKD LHDSAWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVMS SDSMHIGILA AAAHAAANNS PFTIFFNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDM DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKSAPNSI FPGLSLVQWM NMQQNNQFSA AQSGYFPSMV PPTGLQNNLS TDDPSKLLSF QAPVLSAPGV QLNKSAPQNQ IPGQNSHQPV MFSQLQQQQL QTGNTQSQQT VHSSSKNSFQ FTTGSQDSQL QQQQLEPQPS LLQRQQQSAQ LQQSSLQLLH SSMSQKVQQQ PQVQQSSQQG ISEQQLQLQL LQKLQQQQQQ QQQQLLSPSS PLLQPQLLQQ QLAHQQNQQL QQLPVSQHHQ QQLSGNSFSA DKLLNNNFSA PSLMQSQHIS SVQPQSQHKP LTAIRSHSGL TEGDGPSCST SPSTNNCQMS PSNFLNRNQQ GTAMLLGDSV AEPASNLVQE LQSKSDIRIK HEFPSSKGPD QIKYKGTITD QLEASSSGTS YCLDASTIQQ NYALPTFCLD SDVQSHPRNS LPFSANIEGL APDTLLSRGY DSQKDLQNLL SNYGGTPRDI ETELSTAAIS SQSFGAANLP FKPGCSSDVA INEAGVLSNG LWANQAQRMR TYTKVQKRGS VGRCIDVTRY KGYDELRHDL ARMFGIEGQL EDPHRTDWKL VYVDHENDIL LVGDDPWEEF VGCVQSIKIL SSVEVQQMSL DGDLGNVPVP NQACSGSDSG NAWRAPYDDN SAASFNR // ID M5VSV7_PRUPE Unreviewed; 375 AA. AC M5VSV7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04452.1}; GN ORFNames=PRUPE_ppa019539mg {ECO:0000313|EMBL:EMJ04452.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04452.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04452.1; -; Genomic_DNA. DR RefSeq; XP_007203253.1; XM_007203191.1. DR EnsemblPlants; EMJ04452; EMJ04452; PRUPE_ppa019539mg. DR GeneID; 18770844; -. DR Gramene; EMJ04452; EMJ04452; PRUPE_ppa019539mg. DR KEGG; pper:PRUPE_ppa019539mg; -. DR OMA; AESDHAN; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 108 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 375 AA; 41977 MW; FD3A29ED2B33B50B CRC64; MSINHFSSDH PETQWWPNTA HQQQQDPSRP HFLPQFYQDT HHHNYQAWLN SQEQPTPMSP TPPTPTTLNF NLNQNDAESD HANQLQHHLL LQSSPPLDDH DEENEPMFEK PLTPSDVGKL NRLVIPKQHA EKYFPLGGGD SGLLLSFEDE SGKSWRFRYS YWNSSQSYVL TKGWSRYVKE KRLDAGDVVL FERRRSHTDR LFIGWRRRSA AATPSAHDSG PGATQVNGGA GESSGSGSAG GWTRMFYSAP HHNSSDGGSS YPAHQYHNHS AAPYPPDCLH AAGSGVQNMS QTTSSVGSSK ILRLFGVNLE CQQQADHESE PSTPDGSSSL SMSSSQGPTP HHHLYPRAAY DYAADQRVRV LPKTTFINYP NHYYC // ID M5VSZ7_PRUPE Unreviewed; 441 AA. AC M5VSZ7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04482.1}; GN ORFNames=PRUPE_ppa025633mg {ECO:0000313|EMBL:EMJ04482.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04482.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04482.1; -; Genomic_DNA. DR RefSeq; XP_007203283.1; XM_007203221.1. DR EnsemblPlants; EMJ04482; EMJ04482; PRUPE_ppa025633mg. DR Gramene; EMJ04482; EMJ04482; PRUPE_ppa025633mg. DR KEGG; pper:PRUPE_ppa025633mg; -. DR OMA; HGVAKPP; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 276 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 441 AA; 50100 MW; AE3A14C166DA2255 CRC64; MASLHDPPTF SASIPHFFKI ILEDSSKIRI KIPMRFLMKY GENLSSPVHL KLPNGAEMEI ELRRCNNGGV WFDKGWPEFS KFCSLDYGSW LVFGYEGNSN FHVLIFDRTA TEIEYPKPEM EETDSEEEEE EQDDADDGSV EILDVSEEEE QQDDADDGSV EILDVSEEEE QQDDADDESV ENLDVFPPCP RKAREKSPLP CPQPHKKMRT RSSGMMLEES LSNKASYCSK SEMKREKSPL VPSEVKDGVG RMHISTTSGK AIALQRAIAF KSVNPSFRVV MQPWYVKQSF LPMPSGFAKR HLIEHPAGNV FLRVSDGRTW SVKFKYEKSV ARFQYGWLGF VRDNNLEADD VCVFSLIEDV KLSFDVVFFR TTEEAANCLL SPDDLPTKKD LGGLSSSQIF LKRTTDVLGR KYPLTKSEKA LALQRANYAS EGNGKRRFTL F // ID M5VTE4_PRUPE Unreviewed; 237 AA. AC M5VTE4; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04637.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa021764mg {ECO:0000313|EMBL:EMJ04637.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04637.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04637.1; -; Genomic_DNA. DR RefSeq; XP_007203438.1; XM_007203376.1. DR EnsemblPlants; EMJ04637; EMJ04637; PRUPE_ppa021764mg. DR Gramene; EMJ04637; EMJ04637; PRUPE_ppa021764mg. DR KEGG; pper:PRUPE_ppa021764mg; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 237 237 {ECO:0000313|EMBL:EMJ04637.1}. SQ SEQUENCE 237 AA; 27048 MW; F371DDCFE544229B CRC64; MACPTFSPTT PHFFKIILDN SSRDRKLGIL EKFVMEYVDG LSNPVYLKLP SGSEWKIELR RWDGEVWLVK GWPGFSKFYS LDLGHWLVFG YEGNSKFRVC IFDGNSDENS VEMFDFPPCQ RKTREKSTLS CPWPHKKCRR VQVVKQKSTP TYKMGRHDFL TKKGGGGTSG NRTGKATALD RANALKSQNP SSFIWLPSKF HKLHPINHSC EVILQVLNGR TWSVDLNCGK GRTTFGH // ID M5VTE8_PRUPE Unreviewed; 370 AA. AC M5VTE8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04642.1}; GN ORFNames=PRUPE_ppa021899mg {ECO:0000313|EMBL:EMJ04642.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04642.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04642.1; -; Genomic_DNA. DR RefSeq; XP_007203443.1; XM_007203381.1. DR EnsemblPlants; EMJ04642; EMJ04642; PRUPE_ppa021899mg. DR GeneID; 18770505; -. DR Gramene; EMJ04642; EMJ04642; PRUPE_ppa021899mg. DR KEGG; pper:PRUPE_ppa021899mg; -. DR KO; K09287; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 98 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 171 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 98 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 171 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 370 AA; 41766 MW; 747A35DF1C9740B0 CRC64; MEEGMSSTVS NSGMKMNTVG GVSDSSLAAN DSTDGACKRV SKKFKGVVEQ PNGHWGAQIY ANHERVWLGT FNSEIDAAMG YDSAALKLRG RDCHRNFPWT ETTFEEQHFQ NQYATEVVLI MIKDGSYQTK FSEFRRSRSG IESVGADVQF GSLARVQSSN GKGELLEDFL FQKELTPSDV GKLNRLVIPS KYACTYFPTV SEAIRGKVES CSSQLTFYDR MMRSWTFRFC FWKSSKSFVF TKGWSRFVRT HDLQAKDTIR FLQCQYKQSG DGNYKEQPHS FCMIQVKKDG GRSNDVSCLV ENNANSYQYD GVRNDGGMMD SDYKFKVEAV SPNIHEDEDG ILLADEKKCF RLFGVEISDV DVLSSHSIIV // ID M5VU92_PRUPE Unreviewed; 80 AA. AC M5VU92; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04641.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa021867mg {ECO:0000313|EMBL:EMJ04641.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04641.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04641.1; -; Genomic_DNA. DR RefSeq; XP_007203442.1; XM_007203380.1. DR EnsemblPlants; EMJ04641; EMJ04641; PRUPE_ppa021867mg. DR Gramene; EMJ04641; EMJ04641; PRUPE_ppa021867mg. DR KEGG; pper:PRUPE_ppa021867mg; -. DR OMA; REYFNDM; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EMJ04641.1}. SQ SEQUENCE 80 AA; 9229 MW; 6FB7FEE5B67EEEFA CRC64; HVPVTFAWSF VKNRKQTVTL QVRERSWAVN LIGHTKQSGA ELSGGWREFV TENGLMEGDV CIFELIERND IVLKVHIFRC // ID M5VUS9_PRUPE Unreviewed; 257 AA. AC M5VUS9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ05142.1}; GN ORFNames=PRUPE_ppa017836mg {ECO:0000313|EMBL:EMJ05142.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ05142.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ05142.1; -; Genomic_DNA. DR RefSeq; XP_007203943.1; XM_007203881.1. DR EnsemblPlants; EMJ05142; EMJ05142; PRUPE_ppa017836mg. DR Gramene; EMJ05142; EMJ05142; PRUPE_ppa017836mg. DR KEGG; pper:PRUPE_ppa017836mg; -. DR OMA; RRDREIW; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 147 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 147 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 29659 MW; D383E9CAC0FCE761 CRC64; MGSSSRHGKG LAFPVDSRSF FKIVLSKDVL KFPESVVTKY GDCLGDTVFL KVPNSEVWPI ELTKRNGQVW LQQGWSNFAD FYSLAFGYVL LFSYEGNHSH FQVRIFMRSP LETDYFGSSV KEEDNLNGEM DYSNSPESPA SLMNAPSFFK IVLGRTLQDG KLEIPIIAVH TYRDYMADTA YFEVPDGSIW PIEWTRRDRE IWLGRGWPEF AKLDNHGWQA FVRDNQLEEG DACVFELIEK APKIKLRVRI FRDKDQV // ID M5VV45_PRUPE Unreviewed; 218 AA. AC M5VV45; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ05262.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppb012714mg {ECO:0000313|EMBL:EMJ05262.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ05262.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ05262.1; -; Genomic_DNA. DR RefSeq; XP_007204063.1; XM_007204001.1. DR EnsemblPlants; EMJ05262; EMJ05262; PRUPE_ppb012714mg. DR GeneID; 18770084; -. DR Gramene; EMJ05262; EMJ05262; PRUPE_ppb012714mg. DR KEGG; pper:PRUPE_ppb012714mg; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EMJ05262.1}. FT NON_TER 218 218 {ECO:0000313|EMBL:EMJ05262.1}. SQ SEQUENCE 218 AA; 24863 MW; D7ADF7D5D8800425 CRC64; QKAKKEDNTF LRRGRKIGMA RKSSAVRRKP SFFKALVGNF SNQLQIPPAF LVHFDGGKVP QKSHLRTSAG TWPVNVKKAD DKFFFQKGWK KFVHDNDLKL CEFLVFGCAG DLGFYVDIYG RNGGKREFVT AERDRPHEEG HGNVFHRKSP RHHGKQNLPS IDPIKYEATD TESETSMHPL ATTSTGKTIA LQRDNSFNSE KPFFKVALWN SYMDRGVM // ID M5VW80_PRUPE Unreviewed; 247 AA. AC M5VW80; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ05674.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa022219mg {ECO:0000313|EMBL:EMJ05674.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ05674.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ05674.1; -; Genomic_DNA. DR RefSeq; XP_007204475.1; XM_007204413.1. DR EnsemblPlants; EMJ05674; EMJ05674; PRUPE_ppa022219mg. DR Gramene; EMJ05674; EMJ05674; PRUPE_ppa022219mg. DR KEGG; pper:PRUPE_ppa022219mg; -. DR OMA; ANKHILA; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 247 247 {ECO:0000313|EMBL:EMJ05674.1}. SQ SEQUENCE 247 AA; 28103 MW; 3113770A94578AC5 CRC64; MSSRSRREGK GPAFQLSTPF PSFLKIVVQQ ALQDGKLKIP KMLVMEYGDL MADKIFLEVP DGAVWPVKLT RPCNGEIWLQ KGWPEFAKFY SLKHGCLLFF NYGGEHSHFR VRIFMRNTLE MNYFSSSTDD EAEGNSNPSS ETEGQGNKHD REKRTHGKVH FCLKPISVPF ANKHILARDV SSDVTLQISN DERSWAVKCI ITGAFVKDSH LEEGDACVFE LMSNMCIILS FKFLVKILLI HRIKGND // ID M5VX51_PRUPE Unreviewed; 236 AA. AC M5VX51; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ05979.1}; GN ORFNames=PRUPE_ppa015816mg {ECO:0000313|EMBL:EMJ05979.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ05979.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ05979.1; -; Genomic_DNA. DR RefSeq; XP_007204780.1; XM_007204718.1. DR EnsemblPlants; EMJ05979; EMJ05979; PRUPE_ppa015816mg. DR Gramene; EMJ05979; EMJ05979; PRUPE_ppa015816mg. DR KEGG; pper:PRUPE_ppa015816mg; -. DR OMA; DEICFAI; -. DR OrthoDB; EOG09360NZK; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 224 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 236 AA; 26896 MW; 0654F62A25C33867 CRC64; MTSSTEEGAY LLLHLKHTIL NPETARNLDH MKSKILSGIK LKSPSGSKRK ALRIQEPEAP QAREATNGAA RRRSLPRELQ FQQQERRGLF YGNYTPPDLP PIPSLQNLIQ DCSKPFEKQL ARSDVKDNQC RLSMNKEDVE NNIMPLLRNG ENLNEGINVT TYDMTGNEYP MVFKIWATKV HVLTGGWKTF CNDLGLVENQ DFVTLWIFRH VDKGGLCFAI HSRRLPSVIV SFSQNM // ID M5VXH6_PRUPE Unreviewed; 803 AA. AC M5VXH6; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa001557mg {ECO:0000313|EMBL:EMJ06142.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ06142.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639090; EMJ06142.1; -; Genomic_DNA. DR RefSeq; XP_007204943.1; XM_007204881.1. DR EnsemblPlants; EMJ06142; EMJ06142; PRUPE_ppa001557mg. DR GeneID; 18772269; -. DR Gramene; EMJ06142; EMJ06142; PRUPE_ppa001557mg. DR KEGG; pper:PRUPE_ppa001557mg; -. DR OMA; QSHANPV; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 167 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 675 759 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 167 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 803 AA; 88793 MW; 9AE70A9B272E81F7 CRC64; MEIDLNHAVT EVEKSAYCNG DCDKVGGGCV YCLSSSTSSS SSNSSSAPVA SSIYLELWHA CAGPLISLPK KGNAVVYFPQ GHLEQVASSS PFSSMEMPTF DLQPQIFCKV VNVQLLANKE NDEVYTHVTL LPQPELVGTN LDGKELQELG VDEGDGGSPT KSTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVEWRFR HIYRGQPRRH LLTTGWSIFI SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNGLPDSIV GNQNSYPSVL SLLANAISTK SMFHVFYSPR ASHAEFVIPY QKYVRSIANP VTTGTRFKMR FDRDDSPERR CSGVVTGISD LDPYGWPNSK WRCLMVRWDE DIGNDHQERV SLWEIDPSVS LPPLSIQSSP RLMKKLRTSL QTTPPNNSIT AGGGGFMDFE ESVKSSKVLQ GQENIGFISP LYGCDTVNRP QDFEMQAPAH PSLALNATQK ATIGELMRAR HSTYTGFAES DRFPKVLQGQ EICPLRSLTG KANFTLGDWE SNLGCTSYNI YQAPKPNFFS LASESLPNIY FPYGDIRRAG QDPVMCSNAT NLPRENMKIN PYSMQMGVAR NEVGRPNKPS EHKPQESSSA PPTLVQNPRN PNDEDFNGTV TGCKLFGFSL TGENPTPNSQ SSSKRSCTKV HKQGSLVGRA IDLSKLNGYG DLLSELERLF SMEGLLRDSD KGWRILYTDS ENDVMVVGDD PWHEFCNVVS KIHIYTQEEV EKMTIGMISD DTQSCLEQAP VMLEMSKSSS VSQPDSSPTV IRV // ID M5VY82_PRUPE Unreviewed; 270 AA. AC M5VY82; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ06046.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa026462mg {ECO:0000313|EMBL:EMJ06046.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ06046.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ06046.1; -; Genomic_DNA. DR RefSeq; XP_007204847.1; XM_007204785.1. DR EnsemblPlants; EMJ06046; EMJ06046; PRUPE_ppa026462mg. DR Gramene; EMJ06046; EMJ06046; PRUPE_ppa026462mg. DR KEGG; pper:PRUPE_ppa026462mg; -. DR OMA; PKFAREN; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 73 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 214 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 73 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 270 270 {ECO:0000313|EMBL:EMJ06046.1}. SQ SEQUENCE 270 AA; 30566 MW; 45B25A0E9DC7E4F3 CRC64; MKYGDDLSNP VSLELPSGSG SAWKVDLRRL DGEVWFDKGW ADFSEFYSLD RGHWLVFGYQ GNSKFHVCIF DRTCTEVDYP LRKQKMEETD DTDDDFHEES SDDSVEEQPD DSTCPRKTRK KSSLPCPRPQ KKNRTSSRGS GSTSSTRRFE KRTPGCLGSI GPLPKSGKGK VDFPASGFAI ALQRDDAFKS EHPFFKVAMR TSYIHHRNMT NNYVFLRVSG ARTWSVKLCQ YAGRAKFQGG LPKFARENSL VKGDVCIFVL VNSIKPLFDV // ID M5W157_PRUPE Unreviewed; 330 AA. AC M5W157; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ00520.1}; GN ORFNames=PRUPE_ppa023470mg {ECO:0000313|EMBL:EMJ00520.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ00520.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ00520.1; -; Genomic_DNA. DR RefSeq; XP_007199321.1; XM_007199259.1. DR EnsemblPlants; EMJ00520; EMJ00520; PRUPE_ppa023470mg. DR Gramene; EMJ00520; EMJ00520; PRUPE_ppa023470mg. DR KEGG; pper:PRUPE_ppa023470mg; -. DR OMA; FNEHEKS; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 37713 MW; 4E90B537ADE31F1B CRC64; MFDNFNEHEK SSASTQVEEI QAILGAEYPI VIKSMIHSNV SSWNCLTLPK QFCHLHLPLH NTTLTLEVES GEKYRIIFLA GKRILSAGWK KFCTAHKLRV GDLLVLRLVR PLKFKENHPK PLSSDVCQGN IRKTSLMLDT KPELIDNQTE EDNEEFGSKF PGGIRYPVPA ADFEDVISIE NFTILVNGVT IDSWLSKQLR TNYYDLCCSR GSFLHDHLLK SINSKLAAEI ITETTNIANA IRARKLSASH TDYEMWEKTL NAFELLGMDV GFLNAQLERL LSPSFRSEEA VELKRIEAKM MVSFDAKIEA LQEIYERLEF IFQEEVDAPW // ID M5W2F1_PRUPE Unreviewed; 327 AA. AC M5W2F1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ03423.1}; GN ORFNames=PRUPE_ppa008558mg {ECO:0000313|EMBL:EMJ03423.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ03423.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ03423.1; -; Genomic_DNA. DR RefSeq; XP_007202224.1; XM_007202162.1. DR EnsemblPlants; EMJ03423; EMJ03423; PRUPE_ppa008558mg. DR GeneID; 18770781; -. DR Gramene; EMJ03423; EMJ03423; PRUPE_ppa008558mg. DR KEGG; pper:PRUPE_ppa008558mg; -. DR OMA; FWMGLPV; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 59 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 59 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 284 311 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 327 AA; 36842 MW; 57D829140A6E6AE2 CRC64; MTLEDEGGRQ CQLKYIAYKT GLSAGWRQFA ASHNLIEGDV LVFQLVEPTK FKVYIIRSND LTEVDGGLGL LNLDSHTKRK DADKDNAETG TEACNDATRK RAHSPPSEAQ KKKKIGLQPV EQSEDDSEEV DSEVLEESKS PDTALQFEDI QSFENFSILV NGLLVESELP EDVRRKYYKL CCSQNAFLHE NFVEGMNHKL VVGAISETVN IADAIRACKL TTTRDDFVSW DKYLKAFELL GMNVGFLRDR LCRLANLSND SGAAVEARMY KEAKIERSQA GIGIRNIEVK LEELRDMCDE FGAAIESLRS KAEVYTRKFH EEVTAPW // ID M5W2M9_PRUPE Unreviewed; 303 AA. AC M5W2M9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ07987.1}; GN ORFNames=PRUPE_ppa026651mg {ECO:0000313|EMBL:EMJ07987.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ07987.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639090; EMJ07987.1; -; Genomic_DNA. DR RefSeq; XP_007206788.1; XM_007206726.1. DR EnsemblPlants; EMJ07987; EMJ07987; PRUPE_ppa026651mg. DR Gramene; EMJ07987; EMJ07987; PRUPE_ppa026651mg. DR KEGG; pper:PRUPE_ppa026651mg; -. DR KO; K09287; -. DR OMA; GEVNQES; -. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 104 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 173 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 104 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 173 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 35225 MW; 538E131AA5F1D0E8 CRC64; MEEDAASSMI SRVQRNVALE TSGSNDNDFG LLHPNKRARL DNDVSFAKFK GVVPQQNGHW GAQIYANHQR IWLGTFKSEK EAAMAYDSAA IKLRNGKDLH RNFPWTNFTI QEPDFQNHYT TDAIIKMIRD GSYPSKFDAF IRSQKQSQTE EMGKGNNSIR VHGDGKILSR QLFQKELTPS DVGKLNRLVI PKKYAVEYFP CICENVEENG VDDIELVFYD KLMRVWKFRY CYWKSSQSFV FTRGWNRFVK ENNLKANDVI TFYTCENDDQ LREEDRESAT FWLIDVMHIE GRQSTSLECN FSS // ID M5W2Q1_PRUPE Unreviewed; 420 AA. AC M5W2Q1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ01055.1}; GN ORFNames=PRUPE_ppa006275mg {ECO:0000313|EMBL:EMJ01055.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ01055.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ01055.1; -; Genomic_DNA. DR RefSeq; XP_007199856.1; XM_007199794.1. DR EnsemblPlants; EMJ01055; EMJ01055; PRUPE_ppa006275mg. DR GeneID; 18767414; -. DR Gramene; EMJ01055; EMJ01055; PRUPE_ppa006275mg. DR OMA; CILQFDE; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 303 398 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 303 398 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 420 AA; 47836 MW; 9566FF6F24496EC4 CRC64; MKNMIRPCFH KLILSSTLQA KQLMIPENFV KKFRDDLSTV ATLSVPDGNV WRVGIKKADN KFWFHDGWQE FIERYSIRVG YFLTFRYEGH SSFTVHIFNL TTAEINYQPN ALSSTGVSVY RHQVFEEMED DDSVEILGSS PKSIVTDSLR DKLFGDCANQ LIPGKDYNPP ALQNLFNGSK PKNCTNWPDT GNPHPSKGSG LQAGNQSSRE IGVQFNVTEL KKTVDEVKLR SSGEDIRSMK KTMRKKRKLD PTVQDSSSQH EKEVEIRFRF YESASARKRT VTAEERERAI NAAKTFEPVN PFCRVVLRPS YLYRGCIMYL PSCFAEKNLN GVSGFIKLQS SDGRQWPVRC LYRGGRAKLS QGWYEFTLEN NLGEGDVCVF ELLKMKEVVL KVTVFCVVEA AGFVNQPPQQ NASQAKMIRN // ID M5W3U9_PRUPE Unreviewed; 138 AA. AC M5W3U9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ03933.1}; GN ORFNames=PRUPE_ppa013132mg {ECO:0000313|EMBL:EMJ03933.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ03933.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ03933.1; -; Genomic_DNA. DR RefSeq; XP_007202734.1; XM_007202672.1. DR EnsemblPlants; EMJ03933; EMJ03933; PRUPE_ppa013132mg. DR Gramene; EMJ03933; EMJ03933; PRUPE_ppa013132mg. DR KEGG; pper:PRUPE_ppa013132mg; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 138 AA; 15537 MW; 8ECBB89401F6581A CRC64; MWLPSKFYKL SPSIKHSCEV ILQVSNGRTW SVGLSKGRPR FRRGWMDVVR DNHLEVGDLC LFVLISSKST PLFDLVIFRS GEGAKCTNDG EQIVPTKEET DNEDGDSSDD SSNDSSDDSV EIMDKFPPPR KTRVVKRS // ID M5W5F2_PRUPE Unreviewed; 152 AA. AC M5W5F2; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04483.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa025646mg {ECO:0000313|EMBL:EMJ04483.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04483.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04483.1; -; Genomic_DNA. DR RefSeq; XP_007203284.1; XM_007203222.1. DR EnsemblPlants; EMJ04483; EMJ04483; PRUPE_ppa025646mg. DR Gramene; EMJ04483; EMJ04483; PRUPE_ppa025646mg. DR KEGG; pper:PRUPE_ppa025646mg; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 152 152 {ECO:0000313|EMBL:EMJ04483.1}. SQ SEQUENCE 152 AA; 17646 MW; 4AA07A565E41858B CRC64; MVMARRNPSF FSIKLIQSHL WTSAGTWAVN VKKVNDKFFL QKGWKKFVHD HDLKLCEFLV FDYAGNLGFY VDIYGRDGCK KKRSPRHHGK QNLPSIDPIK YEAIDTESET SMHPLATSTG ETIPLQRNNS FNSEKPFFKI AIQNSYIRRG YI // ID M5W5L1_PRUPE Unreviewed; 277 AA. AC M5W5L1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ02075.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppb013756mg {ECO:0000313|EMBL:EMJ02075.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ02075.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ02075.1; -; Genomic_DNA. DR RefSeq; XP_007200876.1; XM_007200814.1. DR EnsemblPlants; EMJ02075; EMJ02075; PRUPE_ppb013756mg. DR GeneID; 18767003; -. DR Gramene; EMJ02075; EMJ02075; PRUPE_ppb013756mg. DR KEGG; pper:PRUPE_ppb013756mg; -. DR OrthoDB; EOG09360LIQ; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EMJ02075.1}. FT NON_TER 277 277 {ECO:0000313|EMBL:EMJ02075.1}. SQ SEQUENCE 277 AA; 31539 MW; 96B9023872917274 CRC64; PQFSSLSIFL VSQSSQSAAV ISQQNPKKHR ASLSAQTEEK MVRKISKNEE KKHSFFKLLA GFNTDSVRIP QKFLKHMLKD LSERAILKLK DSSDSSWTVT VNKRREGAVY FKNGWEEFIK DNSLGTDNEM LQIFYEGKMH FSIRIFAKNG IERTEELSSS EEEEEDSEDN TSEDLEADFT KIGSLHNSTF AKNTTKRPRG RPRKYPVSSS KPCPSKSCKV ESGEELSSSE SIELNEIKEE EEDSEDSTSD DLDGVEPEAF KSNFPYYKGI VRQTKCQ // ID M5W5U1_PRUPE Unreviewed; 793 AA. AC M5W5U1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ02155.1}; GN ORFNames=PRUPE_ppa001608mg {ECO:0000313|EMBL:EMJ02155.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ02155.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639104; EMJ02155.1; -; Genomic_DNA. DR RefSeq; XP_007200956.1; XM_007200894.1. DR EnsemblPlants; EMJ02155; EMJ02155; PRUPE_ppa001608mg. DR GeneID; 18767963; -. DR Gramene; EMJ02155; EMJ02155; PRUPE_ppa001608mg. DR KEGG; pper:PRUPE_ppa001608mg; -. DR OMA; EIWLDDH; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 647 749 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 647 749 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 793 AA; 88252 MW; 85670628BA1CCD35 CRC64; MKGKQVQVHH HQDLHAGDLH HHHMKDANIP ISDGFGGGGA MEELEDQEDN LGVDPSEMWL DDNDQETALL ADVNDPSIFY NDHFPPLPDF PCMSSSSSSS STPAPVKSAT SSSTSSSVSS SSSAASWAIL RSDAEEDGER RHHHNSYNHL HQYSQGDDQA VDAHALSSTA SMEISQPSDL SREGGAMDCM GAMETFGYMD LFESNEFFDP SSIFQSDSLL MEQFQQDDDH QQLLAPHQLQ DPNEATAIIP QQQQEQEVAV RDEENNKEDD QNENKEPDDM AMVFLEWLRS NRETVSAEDL RSVKIKKSTI ECAARRLGGG KEAMKQLLKL VLEWVQTNHL QKRRSNSLTT KDADIVAQDP FQNPNPNTSP RVLESNPSCS FTQTPWMAPP PHAAYDQAGG ILVPTPPPAA YPSMMGYIAP DQYVNGPGPY QPSPEYHHMI DSGQPTWPSS PFGMGTAHYG SFPDNNIHLA PPPQHHPQAF AGYGSQYQPY QYFPLNGEHQ LMRLGSSATK EARKKRMARQ RRLVSHHRHG HQQQQHLNAQ MPDHLLHQQH TRLVGNAADL NCTNTVPLQA NPGNWFYWPT ATAAPSQSPA MMPSITQEAA PPPPLQQMDR PASTQAQNYN QGRSSAAQER QERRQGWKSE KNLKFLLQKV LKQSDVGSLG RIVLPKKEAE THLPELEARD GISIPMEDIG TSHVWNMRYR YWPNNKSRMY LLENTGDFVR ANGLQEGDFI VIYSDVKCNK YMIRGVKVRH AGAKSEGNKR PGKSQRNQHA STPAGTNGSS PSSASASATH KKQ // ID M5W677_PRUPE Unreviewed; 703 AA. AC M5W677; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002195mg {ECO:0000313|EMBL:EMJ09252.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ09252.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639090; EMJ09252.1; -; Genomic_DNA. DR RefSeq; XP_007208053.1; XM_007207991.1. DR EnsemblPlants; EMJ09252; EMJ09252; PRUPE_ppa002195mg. DR GeneID; 18775508; -. DR Gramene; EMJ09252; EMJ09252; PRUPE_ppa002195mg. DR KEGG; pper:PRUPE_ppa002195mg; -. DR OMA; PEFCVKS; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 615 697 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 77227 MW; 5AB26D93ADDD1639 CRC64; MITFMDSKEK LKEGEKCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACGPVDFRNF PRVPPYIFCR VSAIKFMADP ETDEVYAKIR LVPLSASEAG YEDDGIGGLN GSETPDKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPTG GNCTMPYGGY SAFLREDENK LMRNGNGNGS NSNGSLMGKG KVGPESVFEA ATLASNGQPF EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH GHYGLSLSDM HLNKLQTGLF PAGFTPLDHA ATATKFSNNT MTQKPTMSEN VSCLLTMAHS TQTSKKPDDV KPPQLVLFGQ PILTEQQISL SCSGDTVSPV LTGNSSSDGN AEKTANLSDN SGSALHQQSL QERSSCEGFQ WYKDTRQETE PSLETGHCKV FMESEDVGRT LDLSVFGSYD ELNRKLADMF GIENSETLNH VLYRDATGAV KHIGDEPFSC SDFMRTARRL TILMDSGSNN VGM // ID M5W7Q4_PRUPE Unreviewed; 263 AA. AC M5W7Q4; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ09346.1}; GN ORFNames=PRUPE_ppa023805mg {ECO:0000313|EMBL:EMJ09346.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ09346.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639090; EMJ09346.1; -; Genomic_DNA. DR RefSeq; XP_007208147.1; XM_007208085.1. DR EnsemblPlants; EMJ09346; EMJ09346; PRUPE_ppa023805mg. DR Gramene; EMJ09346; EMJ09346; PRUPE_ppa023805mg. DR KEGG; pper:PRUPE_ppa023805mg; -. DR OMA; HESANKF; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 263 AA; 30131 MW; 607F8B8BA26CE003 CRC64; MSASRRQKID HEWPAFSATT PLFLKMILDD TSRDTKLRIP KSFVKKYEKH LSNPVHLKLP SGSEWEVEVT TCDGEVWLDR GWPEFSKFYS LEQGGSLVFK YDVNSKFQVC ILDAKTNEDD ENNSVEILED YDDENDNSAE IFGDYQPCPK TRQKSGPLSC PLPRKKTRLS THSSPEISSS SSKRHVPLSF SKHFIKLEKQ TAKLLVRKKS CCVSLIAHSV NTFPFSVGWA AFARENCLRA RDVCIFELVD KNDISLKVHM FRC // ID M5W8A7_PRUPE Unreviewed; 875 AA. AC M5W8A7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ09561.1}; GN ORFNames=PRUPE_ppa001234mg {ECO:0000313|EMBL:EMJ09561.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ09561.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639090; EMJ09561.1; -; Genomic_DNA. DR RefSeq; XP_007208362.1; XM_007208300.1. DR EnsemblPlants; EMJ09561; EMJ09561; PRUPE_ppa001234mg. DR GeneID; 18772013; -. DR Gramene; EMJ09561; EMJ09561; PRUPE_ppa001234mg. DR KEGG; pper:PRUPE_ppa001234mg; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 326 427 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 591 641 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 326 427 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 875 AA; 96286 MW; C89D26DF4FC4DB25 CRC64; MEPRTCVNSA CGTSSSIEWK KGWALRSGGF ANLCPKCWSA YEQSIFCDIF HSKESGWREC ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPI LSDEKPDGLG ISKISELQPT AQDNQLDGTN VEKLKLIQLG NNKDCNGFRN LLQFQNNDAN GLLQKMKHAD TPPPVGEIGG TCLSNFNLAS NGSSEAPKAE VFKANLGIND IYDSLPQTNL SMSLGAPLGK ANPVPAAIFD EREHSKTSSP LLPGARSRNL FPKPPKLALG AGLEENSTIA SHARVARPPA EGRGRNQLLP RYWPRITDQE LQQISGDSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKASNSV AMQDTHLTAI HNGAHSSETF FSGVFENLPV ISGYPGLLQS LKGSMDPHLN ALSKHLTTAS GDISWHKSEK QEGRTREGML LPSLLVPERK RTRNIGSKSK RLLIDSQDAL ELKLTWEEAQ DLLRPPPAAK PSTIMIEDLE FEEYEEPPVF GKRSIFIVRS TGEHEQWAQC DSCSKWRRLP VDVLLPSKWT CADNAWDQSR RSCSAPDELA PRELESFLRL SKEFKKRRTV ADNRPTQEHE SSGLDALANA AILGDNAADP GTASVATTTK HPRHRPGCSC IVCIQPPSGK GKHKPNCTCN VCNTVKRRFK TLMINKKKRQ SEREAEIAYR NQHAWGPRDE AEVDSTSRHV SSHVDPSDNE ARSANESDSK SQSKVAETGK GILDLNCHPG REGELQAGPD HATSSTSHVP PQATNESEDQ HNENQCQEQE SGGEERPDQG QDDPL // ID M5W8T9_PRUPE Unreviewed; 478 AA. AC M5W8T9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ03225.1}; GN ORFNames=PRUPE_ppa005086mg {ECO:0000313|EMBL:EMJ03225.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ03225.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ03225.1; -; Genomic_DNA. DR RefSeq; XP_007202026.1; XM_007201964.1. DR EnsemblPlants; EMJ03225; EMJ03225; PRUPE_ppa005086mg. DR Gramene; EMJ03225; EMJ03225; PRUPE_ppa005086mg. DR KEGG; pper:PRUPE_ppa005086mg; -. DR OMA; DKERRIC; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 323 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 392 478 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 323 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 392 478 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 478 AA; 54472 MW; 4E7B3C5B394AA148 CRC64; MTSLRREIDN PTKRFSSTTP YFFMMIPKGA SRGIKLRIPN KFLMKCGDDL SNPVFLNVPS GSKWKMELRR WDGDAWFDKG WSEFFEFYSL DNCHSLVFRY EGNSKFNVCI FDQSFKQIDY ALKMPKMKET NSDDSGDVTE ILDKSLPRPR KSREKSPLQC LRPHKKARTS SRGKVDFYAK RHGGGKSITA RFPKRTEPIL GSPHPSTTSE KAIALQRAKA FKSDNPFFMV SMGSTNIDGY HMRLPAKFSK EHINWTHDNI VLHVPNGRTW PVKLGQDARG RVIYLSGWTT FVRDNNLEVG DVCVFELIND VKPLFDVVLF CATKAANCTL SPADDDSGYD SGDDSGDESD DNSIEILDDF PPVPRKTREK PPHISLERAV ERANSFASKY PFFKIAMHAT YIHGHHMNLS SSFVKENLNQ TSTYAILRVS DGRTWSVKLD QYGDARTRFQ GGWMDFVREN SLVIGDVCVF VLPDRSTN // ID M5W9U8_PRUPE Unreviewed; 299 AA. AC M5W9U8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ03570.1}; GN ORFNames=PRUPE_ppa009270mg {ECO:0000313|EMBL:EMJ03570.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ03570.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ03570.1; -; Genomic_DNA. DR RefSeq; XP_007202371.1; XM_007202309.1. DR EnsemblPlants; EMJ03570; EMJ03570; PRUPE_ppa009270mg. DR Gramene; EMJ03570; EMJ03570; PRUPE_ppa009270mg. DR KEGG; pper:PRUPE_ppa009270mg; -. DR OMA; RSWRVVI; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 86 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 86 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 299 AA; 34240 MW; 3051CE6B87DC4F31 CRC64; MARRRRKPSF FKALVHDFSS QLVPRRSLLR TPAGTWNVNV EKVNDGFFFQ KGWKEFVHDH GLKLCEFLIF RYAGNSKFDV DVYGRNGCAK EFVMAVSKND RSLEEEHDNT IHGTQNVDGQ GFGSADGTTT SQATCAIKNE VIDVDSDTSM DVDEPDTQED QLNEDSEIGL PRELGSTEHF YSRTQMENPS EALEAAKKFS SKHPFFRAIM RQAYVDKGRL VIPKSFQTSC IGKKKYVRLQ DSMRRWIVKC ISRRNSSRLS AGWYQFVRDR ALKVGDVCVF ELIDRNDAVM KVSIFRCNS // ID M5WBU9_PRUPE Unreviewed; 534 AA. AC M5WBU9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04250.1}; GN ORFNames=PRUPE_ppa022948mg {ECO:0000313|EMBL:EMJ04250.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04250.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04250.1; -; Genomic_DNA. DR RefSeq; XP_007203051.1; XM_007202989.1. DR EnsemblPlants; EMJ04250; EMJ04250; PRUPE_ppa022948mg. DR Gramene; EMJ04250; EMJ04250; PRUPE_ppa022948mg. DR KEGG; pper:PRUPE_ppa022948mg; -. DR OMA; CKDELEC; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 271 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 439 531 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 271 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 439 531 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 534 AA; 61552 MW; D7588B8ED2E9F4DF CRC64; MTFLRREIHN WPKCYATNPH FFVMVPKGTC RESKLSIPKK FLRKYGDDLS NPVLLKLPNG SKWNIELRRW EGEAWFDKGW PEFSEFYSLE HCHSLVFRYE GNSKFHICIF DKSFVEIEYP LTMPDRKETD ADDDSSDESD DHSDDASLEI LDKFPPCPRK SKEKSSLPCP RPHKKKRTSS SGNVDYPAKR HDRGTSSTPR FLKQTQVVRG RMHPLTTSGK ALALQRAKAY KSDKPSFIVP MHHSYIGRHP MWLTSDFSIF MGHLSKNSAN VILWDLGGRA WVVEFIAKPR AKFQSGWHEF VCGNNLNIND VCVFVLIDDT RLVFEVVIFR AVEAANCTLL PDVDGEETDE DDDSVDSLDE LPPCSKTRKI SPIAPQPHKK NRTCSTSKAK NIEHVCGSSK TRKFVIRRPE VPRMMHPVAA SGKDRALLRA NAYKSKYPSF TAAIHPTNIC GCYLALPAKF VKEHLNQAHD KVILRVSDER TWHVNLCKYG RAFRLQRWMR FVRENHLEVD DVCVFELINN IKPLFNIYFE KASM // ID M5WCL1_PRUPE Unreviewed; 652 AA. AC M5WCL1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002617mg {ECO:0000313|EMBL:EMJ11492.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ11492.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639086; EMJ11492.1; -; Genomic_DNA. DR RefSeq; XP_007210293.1; XM_007210231.1. DR EnsemblPlants; EMJ11492; EMJ11492; PRUPE_ppa002617mg. DR Gramene; EMJ11492; EMJ11492; PRUPE_ppa002617mg. DR KEGG; pper:PRUPE_ppa002617mg; -. DR KO; K14486; -. DR OMA; EDISSHW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 544 625 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 652 AA; 72240 MW; 1DE08DE4D6460E8F CRC64; MANREGGDLY PELWKACAGP LVEVPRSNER VFYFPQGHME QLEASSPTNK ELNQEIPQFN LPSKILCRVL NINLLAEQET DEVYAQITLL PDTNQAEPTS PDPSLPEPQR STVHSFCKIL TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVARD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA TATHAVATQT LFVVYYKPRT SQFIIGVNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG TIIGLEDISS HWSHSKWRSL KVHWDESASV PRPDRVSPWE IEPFVASIPA SVPQPSAVKN KRPRPAAEIP ALDATMSPPS VATEGKRSEN HALWHHQQAD VISNNNSISR TQTDGGWLSQ TGGSKLMFQD AMDDTKIFSG CPLKNDSTCD HVENGKKTET ATSCRIFGIE FINHSASSPS MEKTPLQPIN ASTGITEGRV SNSLAAESDQ KSDVSKASKE NKPGQLQVSS KETQTKQSCS TSTRSRTKVQ MQGMAVGRAV DLTILEGYDQ LIDELEEMFD IKGQIHSGNM WQIVFTDNEG DMMLMGDDPW AEFCDMVKRI FICSSQDVKK ISAGCKLPLS SLEVEGTVTS SD // ID M5WCL7_PRUPE Unreviewed; 187 AA. AC M5WCL7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ04515.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa019889mg {ECO:0000313|EMBL:EMJ04515.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ04515.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ04515.1; -; Genomic_DNA. DR RefSeq; XP_007203316.1; XM_007203254.1. DR EnsemblPlants; EMJ04515; EMJ04515; PRUPE_ppa019889mg. DR Gramene; EMJ04515; EMJ04515; PRUPE_ppa019889mg. DR KEGG; pper:PRUPE_ppa019889mg; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 64 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 94 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 64 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 94 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 187 187 {ECO:0000313|EMBL:EMJ04515.1}. SQ SEQUENCE 187 AA; 21833 MW; AA10B9B11B105E60 CRC64; HLKLPSGAEM EIELRRSKDG WVWFDKGWPE FSKLCSLDYG ENDMPTKKDF GGSSSNQIFV KRTPDVLGRT HPLTKSEKAL ALQRANAFKS EYPYFLVAIP PVYIHRGYLH LPSKFARRHL VKQPARNIIL KILDGRTWLV EFKYETSIAR FQRGWLAFAR DNNLKVGDMC VFVLIDCNER LFEVFFF // ID M5WG19_PRUPE Unreviewed; 247 AA. AC M5WG19; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ05725.1}; GN ORFNames=PRUPE_ppa017776mg {ECO:0000313|EMBL:EMJ05725.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ05725.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639097; EMJ05725.1; -; Genomic_DNA. DR RefSeq; XP_007204526.1; XM_007204464.1. DR EnsemblPlants; EMJ05725; EMJ05725; PRUPE_ppa017776mg. DR GeneID; 18771780; -. DR Gramene; EMJ05725; EMJ05725; PRUPE_ppa017776mg. DR KEGG; pper:PRUPE_ppa017776mg; -. DR OMA; VENHIKP; -. DR OrthoDB; EOG09360EQS; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 247 AA; 28249 MW; 45E6F9F532CA4B4B CRC64; MTCLINRKTE DPGYEDKEMK DSIKGAHDLL YLKHTILDYK TARKLEHMKS KILSGIELNS PSGSKQKALR IQESEATNGA AQGRRELQFQ QEGGGGLFYG HYAPPDLPPI TSLRKLIQDC CKPFEKQLTP SDVSKTPRLC LNKEYVENHI KPVLRDGENP NEGIDVTTYD MEGKEYPMKF TTWGTDLYVL SKGWKTFCHD VGLVETQDFL TLCVFRHAKN GGLCFAIHSR RLPLFKSIKK RRQRKQN // ID M5WG56_PRUPE Unreviewed; 226 AA. AC M5WG56; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ12266.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa018223mg {ECO:0000313|EMBL:EMJ12266.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ12266.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639086; EMJ12266.1; -; Genomic_DNA. DR RefSeq; XP_007211067.1; XM_007211005.1. DR EnsemblPlants; EMJ12266; EMJ12266; PRUPE_ppa018223mg. DR Gramene; EMJ12266; EMJ12266; PRUPE_ppa018223mg. DR KEGG; pper:PRUPE_ppa018223mg; -. DR KO; K09287; -. DR OMA; KWGARIS; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 65 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 127 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 65 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 127 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 226 226 {ECO:0000313|EMBL:EMJ12266.1}. SQ SEQUENCE 226 AA; 26671 MW; 6688F3332C25B1BC CRC64; MVLQRGPSSR FKGVSLLKSG NWGARISYMY KPYWLGAYQM EEEAAIAYDR AAVKLQRGDT QLNFHWSKYS AEESIFQSQY STEEILSMLK DKTYSSKLMN FLSRHSSGLG TRTTTFMNEQ GISYHFLFQK ELTHRDVTNK CFLIPREFSF QYLPPPEGII NAGEDEARYV KLTFYDKHGR SWTFGYSYWQ STRNFMFTNG WGHFIRMNNL NQKDLVMFYK CEYEGE // ID M5WJ89_PRUPE Unreviewed; 876 AA. AC M5WJ89; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ09298.1}; GN ORFNames=PRUPE_ppa001229mg {ECO:0000313|EMBL:EMJ09298.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ09298.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639090; EMJ09298.1; -; Genomic_DNA. DR RefSeq; XP_007208099.1; XM_007208037.1. DR EnsemblPlants; EMJ09298; EMJ09298; PRUPE_ppa001229mg. DR Gramene; EMJ09298; EMJ09298; PRUPE_ppa001229mg. DR KEGG; pper:PRUPE_ppa001229mg; -. DR OMA; MHSEDAL; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 332 433 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 624 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 332 433 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 876 AA; 96478 MW; 99A9C6EE0F989CA2 CRC64; MGSKICMNVL CGTTNTHEWK KGWPLRSGGF AHLCFKCGAA YEKLVFCDKF HAGESGWRDC SLCRKPLHCG CIVSKSLYEC LDYGGVGCIS CAKSSQPRVI QNDDVLNGFG GLKISNYSDR QSTVVQNGAF SNTVDEGKLL QLCKIMEANE SNLLPQPQRG DINVSLVQKK QEEVINHKGE VGLGFSSTTQ PSIGSLTFSK SDNGRTMIED MNKSSSQPSL SMTLGSPSAT PSFSKTPSSF QQGLVDGREQ SKTPSSFQQG QKSRPILPKP LKPGVAMSSE TNKGGFPNVR VARPPAEGRG KNQLLPRYWP RITDQELQKL SGDLNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGLPIK IQDVKGNEWL FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRID PGGRLVMGFR KASKSLDMQN PATGSGHPGL FQTNTGSKDP HLHALSEHLH LTDGDMSLHK NDYHGHRTSE DLLQQPVSNS DKKRARNIGP KSKRLLMHSE DVLELRLTWE EAQDLLRPPP SVKPSIVTIE DHEFEEYDEP PVFGKRSLFT ASSSERQEQW AQCDDCSKWR RLPADVLLPP KWTCSENSWD TSRRSCSAPE EMSQKDFDSL LRASKDLKKR RIIENCTETQ VHEPSGLDAL ASAAILGDNV VDSGEQSVGA TTRHPRHRPG CTCIVCIQPP SGKGKHKPTC TCNVCLTVRR RFKTLMMRKK KRQSEREAEN AQKDNNNHKD ESEINGTSTE VGLHMNHSSE NGGCQSRIEA DVAESSTAGQ IDLNCEPNPY VQASGLTLLR LADAVSQPLN NYRKESCLAN MMCEPQAGIG SSLLTQATDE SERRLSNEGC LSAVAAWDCE GRGDAD // ID M5WJC8_PRUPE Unreviewed; 110 AA. AC M5WJC8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ13834.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa017988mg {ECO:0000313|EMBL:EMJ13834.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ13834.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ13834.1; -; Genomic_DNA. DR RefSeq; XP_007212635.1; XM_007212573.1. DR EnsemblPlants; EMJ13834; EMJ13834; PRUPE_ppa017988mg. DR GeneID; 18781071; -. DR Gramene; EMJ13834; EMJ13834; PRUPE_ppa017988mg. DR KEGG; pper:PRUPE_ppa017988mg; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 110 110 {ECO:0000313|EMBL:EMJ13834.1}. SQ SEQUENCE 110 AA; 12425 MW; 7710238DB6196699 CRC64; MSGKRPANDS VEETSTGSIL FKSENSCFIK ILTKILYPVT IPKELAIAEG LVRKKTVKLH DPAGRSWIVK LRVHRSPYLR FEMTKGWAKC CRANQISQGD TIVFEFVKPS // ID M5WJX8_PRUPE Unreviewed; 719 AA. AC M5WJX8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002082mg {ECO:0000313|EMBL:EMJ09538.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ09538.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639090; EMJ09538.1; -; Genomic_DNA. DR RefSeq; XP_007208339.1; XM_007208277.1. DR EnsemblPlants; EMJ09538; EMJ09538; PRUPE_ppa002082mg. DR Gramene; EMJ09538; EMJ09538; PRUPE_ppa002082mg. DR KEGG; pper:PRUPE_ppa002082mg; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 607 687 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 719 AA; 79327 MW; F18A70123955E0D6 CRC64; MEYSERSLDP QLWHACAGGM VHMPPVNSKV FYFPQGHAEH AQAHVDFSSA SLRIPSLILC RVASIKFMAD PETDEVFAKI KLNPIENNEP YASDEDSMEA DGSENQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHSE IWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGLDGA GGPELASGWN NSHGGGSGAC VLPYGGFSVF LREEENKMVR NGGGNLSPNG NLRGKGRVRP ESVVEAATMA ANGQAFEVVY YPRASTPEFC VKASAVRAAM RVQWCSGMRF KMAFETEDSS RISWFMGTIA SVQVSDPIRW PNSPWRLLQV TWDEPDLLQN VKCVSPWLIE LVSNFPMIHM SPFSPPRKKL RLPQPDFTLD GQLTLPSFSG NPLGPSSPLC CLPDNTPAGI QGARHAQFRI SLSDLHVNNK LQSGLFQSSF QRFDQNSRIS SGIRAGHTSS NENLSCLLTM GNSSQNSEKS DNVKKHQFLL FGQPILTEQQ ISRSCSSDAV SQLLTGKDSK DGNQDRTKFL SDGSKSAHGM QVSLEKSSNA GFPWNKDFQG SDFDLETGHC KVFMESEDVG RTLDLSVLGS YEELYRRLAN MFGIEKPQML SHVLYRDVTG AVKQTGVEPF SDFMKKAKRL TILTHPTDES IGRTWIRGMQ NAENGLSATN KTGPLSIFA // ID M5WK34_PRUPE Unreviewed; 242 AA. AC M5WK34; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ13641.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa017199mg {ECO:0000313|EMBL:EMJ13641.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ13641.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ13641.1; -; Genomic_DNA. DR RefSeq; XP_007212442.1; XM_007212380.1. DR EnsemblPlants; EMJ13641; EMJ13641; PRUPE_ppa017199mg. DR Gramene; EMJ13641; EMJ13641; PRUPE_ppa017199mg. DR KEGG; pper:PRUPE_ppa017199mg; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 58 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 58 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 67 94 {ECO:0000256|SAM:Coils}. FT NON_TER 242 242 {ECO:0000313|EMBL:EMJ13641.1}. SQ SEQUENCE 242 AA; 27457 MW; E33F6C7197F60AFB CRC64; MNYVNGRLPP TCTLRGPSGE CWTGWQGFVK DHSLEIANFL VFDYGGKSKF DVTMYDPIGT EKELEPAEKR RGNRAQLEEE IIELETEEPD EESEEDARIS NIRKCKSGKR IATDGGKEKS NAHVAFRSKH PCFIGTMTKN HYRLKTFSWT KKCLIQVSEH FLSCSYLQNI PKALAVAKGL IRKKSVEVED PNGISWDVKV RLHGKEHRGG RLFMTKGLSK CFHANNISLG DTLVFELFNT KS // ID M5WL61_PRUPE Unreviewed; 887 AA. AC M5WL61; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa001179mg {ECO:0000313|EMBL:EMJ14001.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ14001.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ14001.1; -; Genomic_DNA. DR RefSeq; XP_007212802.1; XM_007212740.1. DR EnsemblPlants; EMJ14001; EMJ14001; PRUPE_ppa001179mg. DR Gramene; EMJ14001; EMJ14001; PRUPE_ppa001179mg. DR KEGG; pper:PRUPE_ppa001179mg; -. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 755 839 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 887 AA; 98270 MW; 75A850FD3EFC5224 CRC64; MRLSSAGFSP QSQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDG YLPAGLGNPN KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPS PSEFVIPLTK YIKAVYHTCI SVGMRFRMLF ETEESSVRRY MGTITGISDL DPRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPPGLPS FHGIRDDDLG MNSQLMWLRG DNGDRGIQSL NFPGIGVTPY MQPRLDASMI GLQTDMYQAM AAAALQEMRA VDPSRPLPTS LLQFQQPQSL PSRSTALMHP HMVHESQSQQ AFLQSVQENH RQSQPQTQTQ SHLLQQQLQH QNSFSNQQQL VDHQQIPSAV PAMTHFSSAS QSQSPSLQVA TSLCQQQSFS DSNGNPATST ILSPLHSLMG SFPQDEPSHL LNLPRTNQLI SSGAWPSKRA AIEPLLSSGV SQCVLPHVEQ LGPPQTTISQ NSISLPPFPG RECSIDQEGS TDPQSHLLFG VNIESSSLLM QNGMSNLRGV GSDSDSTTMH FPPNYLSTTG TDFSLNPAVT PSSCIDESGF LQSPENVGHG NPLNNNFVKV YKSGSFGRSL DITKFSSYHE LRGELARMFG LEGELEDPVR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSPHEV QQMGKRGLDL LKSVPTQRLS NNSCDDYGSR QDSRNLSGIT SVGSLEY // ID M5WMI0_PRUPE Unreviewed; 578 AA. AC M5WMI0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002065m1g {ECO:0000313|EMBL:EMJ14992.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ14992.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ14992.1; -; Genomic_DNA. DR RefSeq; XP_007213793.1; XM_007213731.1. DR EnsemblPlants; EMJ14992; EMJ14992; PRUPE_ppa002065m1g. DR Gramene; EMJ14992; EMJ14992; PRUPE_ppa002065m1g. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 63680 MW; 965FFDFE3DD87090 CRC64; MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYNQQRPSQ ELVAKDLHGL EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGI RRAAQVKGSA TYPTLCSQQL NYNTITDVVN AISMKNAFNI FYNPRASSSE FIIPSRKFLR SLDHSFSPGM RFKMRFETED AAERRYTGLI TGISELDPVR WPGSKWRCLV VRWDDIDTSK HGRVSPWEIE PSGSVSSSHS LMAAGLKRAR SGLSAAKTEF PVPNGIGASD FGESLRFQKV LQGQEILGFD THFGGLGGQN QHPSEPRRGF HGSSGSGIAA GGNGLRKSLA HSEITSTGIG FGESFRFHKV LQGQEIFPSP PYGRASTNNE AHEYGGPGIY DGFQVPSFRN GWPAMMQSNN AHVRPSASSV QVSSPSSVLM FQQAMNPGPE FNSVYNGHNQ EEQRVIKRTP YVSESDGGKQ ASSSFCERSF SREDHGGMNS YNQHGISNHP VISQSTFSGS QDAVSPYKGS CRLFGFSLSE EKRVPDRESN STSTASTLNP GVQFHSKPAL MTSAVGITCT KEWAFDWRGE RMESCLQG // ID M5WN87_PRUPE Unreviewed; 138 AA. AC M5WN87; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ15169.1}; GN ORFNames=PRUPE_ppa013141mg {ECO:0000313|EMBL:EMJ15169.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ15169.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ15169.1; -; Genomic_DNA. DR RefSeq; XP_007213970.1; XM_007213908.1. DR EnsemblPlants; EMJ15169; EMJ15169; PRUPE_ppa013141mg. DR GeneID; 18781071; -. DR Gramene; EMJ15169; EMJ15169; PRUPE_ppa013141mg. DR KEGG; pper:PRUPE_ppa013141mg; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 138 AA; 15665 MW; 094806662F1D1B65 CRC64; MSGKKPTTDY VEETTSESIS FKSDHRCFME TMKRHYRYCM MIPKKLAIAE GLNSARNVTL RDPNGRLWLV KLVIRPKSSC KRVEFTTGWG ECCQANQISV GDTMVFEFVK QSAIKLHIFG EVNGKRCPVV LDAPNGEN // ID M5WP11_PRUPE Unreviewed; 124 AA. AC M5WP11; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ14981.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppb019942m2g {ECO:0000313|EMBL:EMJ14981.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ14981.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ14981.1; -; Genomic_DNA. DR RefSeq; XP_007213782.1; XM_007213720.1. DR EnsemblPlants; EMJ14981; EMJ14981; PRUPE_ppb019942m2g. DR Gramene; EMJ14981; EMJ14981; PRUPE_ppb019942m2g. DR KEGG; pper:PRUPEppb019942m2g; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EMJ14981.1}. SQ SEQUENCE 124 AA; 13865 MW; 3E3C00AEC0128806 CRC64; LSPSIKHSCE VILQVSNGRT WSVGLSKGRP RFRRGWMDVV RDNHLEVGDL CLFVLIFRKS TPLFDLVIFR SGEGAKCTND GEQIVPTKEE TDNEDGDSSD DSSNDSSDDS VEIMDKFSPP RKNC // ID M5WP21_PRUPE Unreviewed; 722 AA. AC M5WP21; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002065m1g {ECO:0000313|EMBL:EMJ14991.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ14991.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ14991.1; -; Genomic_DNA. DR RefSeq; XP_007213792.1; XM_007213730.1. DR EnsemblPlants; EMJ14991; EMJ14991; PRUPE_ppa002065m1g. DR GeneID; 18778626; -. DR Gramene; EMJ14991; EMJ14991; PRUPE_ppa002065m1g. DR KEGG; pper:PRUPEppa002065m1g; -. DR KO; K14486; -. DR OMA; IVDYPFC; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 722 AA; 78848 MW; DF93037492932D95 CRC64; MGGLIDLNSA TEDEETPSSG SSSTSSASDA SASASASVCL ELWHACAGPL ISLPKKGSVV VYLPQGHLEQ VSDFPASAYN LPPHLFCRVV DVKLHAETGT DDVYAQVSLV PESEEIEHKL REGETDAYGE EEDVEAIGKS TTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYNQQ RPSQELVAKD LHGLEWRFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGDDGEL RLGIRRAAQV KGSATYPTLC SQQLNYNTIT DVVNAISMKN AFNIFYNPRA SSSEFIIPSR KFLRSLDHSF SPGMRFKMRF ETEDAAERRY TGLITGISEL DPVRWPGSKW RCLVVRWDDI DTSKHGRVSP WEIEPSGSVS SSHSLMAAGL KRARSGLSAA KTEFPVPNGI GASDFGESLR FQKVLQGQEI LGFDTHFGGL GGQNQHPSEP RRGFHGSSGS GIAAGGNGLR KSLAHSEITS TGIGFGESFR FHKVLQGQEI FPSPPYGRAS TNNEAHEYGG PGIYDGFQVP SFRNGWPAMM QSNNAHVRPS ASSVQVSSPS SVLMFQQAMN PGPEFNSVYN GHNQEEQRVI KRTPYVSESD GGKQASSSFC ERSFSREDHG GMNSYNQHGI SNHPVISQST FSGSQDAVSP YKGSCRLFGF SLSEEKRVPD RESNSTSTAS TLNPGVQFHS KPALMTSAVG ITCTKEWAFD WRGERMESCL QG // ID M5WPA8_PRUPE Unreviewed; 160 AA. AC M5WPA8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ15539.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppb025337mg {ECO:0000313|EMBL:EMJ15539.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ15539.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ15539.1; -; Genomic_DNA. DR RefSeq; XP_007214340.1; XM_007214278.1. DR EnsemblPlants; EMJ15539; EMJ15539; PRUPE_ppb025337mg. DR Gramene; EMJ15539; EMJ15539; PRUPE_ppb025337mg. DR KEGG; pper:PRUPE_ppb025337mg; -. DR OMA; ESSCEEQ; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 160 160 {ECO:0000313|EMBL:EMJ15539.1}. SQ SEQUENCE 160 AA; 18272 MW; 41CBDFE5B1C692E3 CRC64; MARKLMKRSV KKKSFFKILL GDFSKHLRIP PAFIKNFNGG SLGKCSLRGP SGKGRAVELE ERENGLFFSK GWQGFVKDHH LEVGNFLVFR YDGESKFKVT IYDRSACEKD VEVAERGIGS SDSIESKGNQ VRVKEEIIDL ETENYNEDYE NKTSIANRRN // ID M5WR80_PRUPE Unreviewed; 177 AA. AC M5WR80; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ15726.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa015343mg {ECO:0000313|EMBL:EMJ15726.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ15726.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ15726.1; -; Genomic_DNA. DR RefSeq; XP_007214527.1; XM_007214465.1. DR EnsemblPlants; EMJ15726; EMJ15726; PRUPE_ppa015343mg. DR Gramene; EMJ15726; EMJ15726; PRUPE_ppa015343mg. DR KEGG; pper:PRUPE_ppa015343mg; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 177 177 {ECO:0000313|EMBL:EMJ15726.1}. SQ SEQUENCE 177 AA; 19892 MW; 58025DAB09093A14 CRC64; MRIPPKFVKN FNVRPLHKCA LSGPTGIRWA VELEERENGL FFQDGWQGFV KDHHLEDGDF LVFKYDGESK FKVTIYDRTA CEKNVKVAER SGCPVSLANK GKAQSIPKEV AVTEDLLSKK SMMIQDPTGR SWPVKLRVRG KTVVTGTRLY PGTPAIFEFV KPSLAQIHIF RVGGNSV // ID M5WWQ7_PRUPE Unreviewed; 486 AA. AC M5WWQ7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ11230.1}; GN ORFNames=PRUPE_ppa019131mg {ECO:0000313|EMBL:EMJ11230.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ11230.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639086; EMJ11230.1; -; Genomic_DNA. DR RefSeq; XP_007210031.1; XM_007209969.1. DR EnsemblPlants; EMJ11230; EMJ11230; PRUPE_ppa019131mg. DR GeneID; 18776633; -. DR Gramene; EMJ11230; EMJ11230; PRUPE_ppa019131mg. DR KEGG; pper:PRUPE_ppa019131mg; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 104 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 104 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 486 AA; 54503 MW; 87E95ECF0400862B CRC64; MNFGSAARDG GFSTEDENIM VTGKLPFSYA SSPSSSTSSA QYNKTTSIAT LVPSAHYNRA GYDDGPDTKL ELMDSSPRDR DNNEEDDGSR REENPIAIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSTNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ RGLGELGKDR LFIDWRRRPD APDPIHHNHH HPHQLHPHHH HYQPNFAIAH HQQQQQQHFS WNHHQRSVPW SPLLMRPPPG GGLVPRDHLQ HLSQQINYSM NMHHPYRNTG TSSTAGGGSG GSSYGYGNVV SSSGPIYYLR SASSTAPHEY EGSGLGLQQQ LQQQQQQQQQ QQVQLLGRVH EPNMVLESVP VVHGKAAAKR LRLFGVNMDC PISESDHECD ILSSSSSQYH HATMASPSHQ LSPSSQPPLQ LRLFDGTPLH STTTTTTSAS TTTDFLSIRG KHQASSPFSM SLDFDV // ID M5WXD7_PRUPE Unreviewed; 878 AA. AC M5WXD7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ14003.1}; GN ORFNames=PRUPE_ppa001220mg {ECO:0000313|EMBL:EMJ14003.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ14003.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ14003.1; -; Genomic_DNA. DR RefSeq; XP_007212804.1; XM_007212742.1. DR EnsemblPlants; EMJ14003; EMJ14003; PRUPE_ppa001220mg. DR Gramene; EMJ14003; EMJ14003; PRUPE_ppa001220mg. DR KEGG; pper:PRUPE_ppa001220mg; -. DR OMA; CASAYEQ; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 327 428 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 555 605 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 327 428 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 709 730 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 878 AA; 96617 MW; 749B516CFA82A190 CRC64; MSSSSSKVCY NSECKELKSE HPRKGWRLRT GEYAELCDRC YLAYEEGRFC ETFHMNAAGW RCCESCGKRV HCGCIVSSHA FTLLDPGGVE CMTCARKNFV LTPNPAWPTS MFFHSPLSER LKDLSVKNWT HLAGSGPVPW RQAPSLFNSS IPSSELHTRV PYEVDVSTGI NKLNASERIF VSSMEKKKVE DFSERLMKVN LTMGTQESLE NGKPGMDSFM AHKLQSASLK EDPSTPQFGP YGSVSETNAQ VGVTGTNLRP TLPLAKQFNG NLQNGVESSA DTQIRNARPR ADARGRNQLL PRYWPRFTDQ ELQQISGDKN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLKVQDSK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT FSRLEPEGKL VMGFRKASTA PPSDQENETN KASNGVSALA DAELADPSSW SKVDKSGYIA KEALGSKSLI SRKRKNSTLG SKSKRLRIEN EDLIELKLTW EEAQGLLRAP ANHIPTVVVI EGFEFEEYED APILGMPTIY ATGSAGEKIQ WAQCEDCFKW RKLPVNALLP SKWTCSDNSW DPERSSCSAA QDLTTEQLED LLPSHSTVTS KKMKAAKQDP DNIEALEGLD TLANLAILGE GESLPASAQA TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCLTVK RRFRTLMMRR EKKQSEKEAE STRKKQQQQQ LVVIDKVDDD TPICCNAGSS SPNQKKEVLE LSDDDLNRTK SSTPPFKGQI DLNIQPEREE ELSPGSDSGS MMKLLQDATE RYLKQQRLSS SGGSENSSGN RSQQVGGEAG GGEPLSNGVT LGSSNHDGGN DCPATLSIKA SASMTATG // ID M5WXK1_PRUPE Unreviewed; 166 AA. AC M5WXK1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ14078.1}; GN ORFNames=PRUPE_ppa021660mg {ECO:0000313|EMBL:EMJ14078.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ14078.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ14078.1; -; Genomic_DNA. DR RefSeq; XP_007212879.1; XM_007212817.1. DR EnsemblPlants; EMJ14078; EMJ14078; PRUPE_ppa021660mg. DR Gramene; EMJ14078; EMJ14078; PRUPE_ppa021660mg. DR KEGG; pper:PRUPE_ppa021660mg; -. DR OMA; YNKESKS; -. DR OrthoDB; EOG09360MM8; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 166 AA; 19133 MW; A297D2B1F12BBBC3 CRC64; MATKLSKPSL QKQSFFKVLL GDFYQHLRLP PVFIEKLDGE SLPKCDLRGP NGKLWTVELE EIRENGFFFH DGWQGFVRDH CLEIGNFLVF DYDGDSKFDV TIYEPTGCEK DVEAAKRRNG NPVSSVKDEI VDIETENYNK ESKSKTINAE RTSRKFYSIL NLLLNS // ID M5WXX6_PRUPE Unreviewed; 507 AA. AC M5WXX6; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ11675.1}; GN ORFNames=PRUPE_ppa025897mg {ECO:0000313|EMBL:EMJ11675.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ11675.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639086; EMJ11675.1; -; Genomic_DNA. DR RefSeq; XP_007210476.1; XM_007210414.1. DR EnsemblPlants; EMJ11675; EMJ11675; PRUPE_ppa025897mg. DR Gramene; EMJ11675; EMJ11675; PRUPE_ppa025897mg. DR KEGG; pper:PRUPE_ppa025897mg; -. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 408 507 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 408 507 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 507 AA; 55771 MW; C3F6C1FB98DB274F CRC64; MDGKVACVEC TQKCLLDHGN KKKASPDVAS FFKVMIGDRF SKLLFLPPKF APTVSALVNQ KAVLEDSLGL QWEVIISRIN GSLSLKQGWN AFSLDHDLKI GEFLIFNYIT SSHFIVKIYD KSGCEKLNFP EAINQKKRTR DNRKDVGDKQ EEDRTYIFDL SDFEMLKKNS GTGGSHEVTA MDETCTDHDD SLLRLRNGAG PVDKNPVAKG AVTTAIPMDE TCSDHDDSLL RLINEAGSVD KSPVAKEAVT AAIPSDASKF DGSQINNSSE TKVQNTASPS HEGLCICKTS WHLFPKAALK PEENENISNI SNTAINKCLT ADGSGKTQLK SLSGNEVVIS GKEHDFIDDS CQSANKKISE ISESFGESVK VVNPVCSKIS NMIRTGNDCA VPVVKSEPVD PVITWPISSS FSCQVKAGSQ SFLELPMRLP IRMTYRGRPQ TDRRVVYLRD PVMRLWPVLY IERNYFKTLA SGWEAFSKAN NIQPGDECVI GIENGVEGIC SVQIISK // ID M5WYY7_PRUPE Unreviewed; 919 AA. AC M5WYY7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa001069mg {ECO:0000313|EMBL:EMJ18889.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ18889.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639030; EMJ18889.1; -; Genomic_DNA. DR RefSeq; XP_007217690.1; XM_007217628.1. DR EnsemblPlants; EMJ18889; EMJ18889; PRUPE_ppa001069mg. DR GeneID; 18783128; -. DR Gramene; EMJ18889; EMJ18889; PRUPE_ppa001069mg. DR KEGG; pper:PRUPE_ppa001069mg; -. DR OMA; YMSRQDL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 783 867 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 919 AA; 101273 MW; 70CD179260945F58 CRC64; MRLSSSSSAS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVITLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWTNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSPFPLRLKR PWPSGIPSFH GLKDGDMGIN APLMWLQGGV GDQGIQSLNF QGFGVTPWMQ PRLDASMAGL QPEVYQAMAA AALQEMRTVD SSKCASQSLL PFQQSSNVSN GPAAVLQRQV LPQSQSQNTY LQSFQENQAP AQTQVLQQQL QRYHPYSDQR QQQQLQQHQQ QQQLHQQHQQ QLQQSHHLHQ LSVQQQIPNV MSALSNFASA TQSQSASLQA IPSQSQQQSF PDPVGNPISS SDVPPIHSIL GSLSQDGASH LLDLSGSNSV ISSSLLPKQI AGEQQLSSGA AQCVLPQVEQ LGTPQSNISE LTALPPFPGR EYSAFQGGTD PQSNLLFGVN IDSSSLMLHN GIPTLRNIGN GNDSLSMPFG ASSYTSATGN DFPLNSDMTT SSCVDESGFL QSSENVDQVN PTRNFVKVHK SGSFGRSLDI SKFSSYDELR SELARMFGLE GQLEDPQRSG WQLVFGDREN DVLLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGLNCAA SVPSNKLSNG GNTTCDDYVS RQDVRNSTNG IASLGSLDY // ID M5WZ56_PRUPE Unreviewed; 839 AA. AC M5WZ56; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa001392mg {ECO:0000313|EMBL:EMJ12100.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ12100.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639086; EMJ12100.1; -; Genomic_DNA. DR RefSeq; XP_007210901.1; XM_007210839.1. DR EnsemblPlants; EMJ12100; EMJ12100; PRUPE_ppa001392mg. DR GeneID; 18776450; -. DR Gramene; EMJ12100; EMJ12100; PRUPE_ppa001392mg. DR KEGG; pper:PRUPE_ppa001392mg; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IEA:EnsemblPlants. DR GO; GO:0010047; P:fruit dehiscence; IEA:EnsemblPlants. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0008285; P:negative regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0048481; P:plant ovule development; IEA:EnsemblPlants. DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants. DR GO; GO:1903288; P:positive regulation of potassium ion import; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 262 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 720 804 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 160 262 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 839 AA; 93456 MW; 477623AEBFF23CF2 CRC64; MTSSEVSIKD NCGNQRGDSF SSGFSDHNDV RNNLEGQNSH PTVSAAGRDA ETALYTELWH ACAGPLVTVP RERERVFYFP QGHIEQVEAS TNQVADQQMP VYNLPSKILC RVIHVQLKAE PDTDEVFAQV TLLPEPSQDE NTVEKEPPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPQLD MSRQPPTQEL VAKDLHANEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGSAPS SVISSHSMHL GVLATAWHAI LTGTMFTVYY KPRTSPAEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADTKRWR DSKWRSLKVR WDETSSIPRP DRVSPWKIEP ALAPPALNPL PMPRPKRPRS NMVPSSPDSI LTREGSSKVT ADPAMPGGFS RVLQGQEFST LRGNFVDSES DTAEKSLAWT PSVDDEKIDV VSASRRHGSE NWMPSGRHEP TYTDLLSGFG TNVDSSRGIC PPFVDQAVGN SMRKHSLDQE GKFNLQSWSM LPSSLSLSLD SNLKGPPIGN MAYQAQGNAR YGGFSDYSVL NGHRVDHPQG NWLMPPPPSH FENPANAREA MPQHASLQKQ EAVKPKDGNY KLFGIPLIAP EAALSHRNAM IGSPHHNQVH TFESDQKSDK SRGSKSVENP LAVGEPDKLL QTSQQHVRDG QGKPQGGSTR SCTKVHKQGI ALGRSVDLTK FNNYEELIAA LDQLFEFDGE LMAPKKNWLI VYTDDEGDMM LVGDDPWQEF CGIVRKIFIY TREEVQKMNP GTLNSHGEEN LSLVAEGADA REGKSQLLP // ID M5X0W7_PRUPE Unreviewed; 641 AA. AC M5X0W7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002710mg {ECO:0000313|EMBL:EMJ19121.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ19121.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638974; EMJ19121.1; -; Genomic_DNA. DR RefSeq; XP_007217922.1; XM_007217860.1. DR EnsemblPlants; EMJ19121; EMJ19121; PRUPE_ppa002710mg. DR Gramene; EMJ19121; EMJ19121; PRUPE_ppa002710mg. DR KEGG; pper:PRUPE_ppa002710mg; -. DR OMA; IIAKDMH; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:EnsemblPlants. DR GO; GO:0007389; P:pattern specification process; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048829; P:root cap development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 100 202 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 100 202 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 641 AA; 71825 MW; 7EC524BEEE286335 CRC64; MDSVRDPMNN NSKNWLDSKF WHACAGGMVQ MPHINSKVFY FPQGHAECAH GKVDFGNCRI PPLILSRISA ITYMADHETD EDEFVENNGT VENPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LAKDVHGEIW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA GDSIVFFRAE SGDLCVGIRR AKRGIGGGPE YPSGWNPAAE NSGSHYPGYS GFPRENGNHL MERNSSGEWR GKIRAEYVIE AATLAASGQP FEVVYYPRAS TPEFCVKATS VRAAMQIQWC SGMRFKMPFE TEDSSRISWF MGTISYVRVA DPSRWPESPW RLLQVSWDEP DLLQNVKRVS PWLVELVSSI PAIHLSPFSP PRKKLRLQHN PDYSLFSQFP MPSVCSNFLN SSNPLCSVSD KISAGIQGAR QAQFELSSSD VFFNKLHSGM FPVGFQKLGH FAPSGIPEGN FMHVAESNEN ISSCLTKGIP SQSLKGNGEI KTPHIFLFGQ LILTEQQMSK SSSGNLENSS DEGSPWNRDH QKSNVSLETS YCKVFIESGD VGTLDLSVLG SYKELYGKLA DMFGLKNSEM LRNVLYRDVE GAIKHTEDEP FRYFCAYLLL LKSCALFFSF SAFQDVYEQY S // ID M5X1G4_PRUPE Unreviewed; 148 AA. AC M5X1G4; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ19759.1}; GN ORFNames=PRUPE_ppa012926mg {ECO:0000313|EMBL:EMJ19759.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ19759.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638974; EMJ19759.1; -; Genomic_DNA. DR RefSeq; XP_007218560.1; XM_007218498.1. DR EnsemblPlants; EMJ19759; EMJ19759; PRUPE_ppa012926mg. DR GeneID; 18786370; -. DR Gramene; EMJ19759; EMJ19759; PRUPE_ppa012926mg. DR KEGG; pper:PRUPE_ppa012926mg; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360Z5S; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 16633 MW; D8296D2E82FDFFB6 CRC64; MKGEPRMGDL LTSNPVIELE GDEFWPLSGK PFFDVVLTKT NIKRLYQLVV PGKFSATLPS CSIPTVLIFR GKNWEMIYHG SSSHKRLDNW RAFAVDNNLK VGDACVFEQL ECSSTRLVFR VQILRGDISS EFLDKLGGDN VDAPIVLE // ID M5X2H0_PRUPE Unreviewed; 128 AA. AC M5X2H0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ15728.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa015369mg {ECO:0000313|EMBL:EMJ15728.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ15728.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ15728.1; -; Genomic_DNA. DR RefSeq; XP_007214529.1; XM_007214467.1. DR EnsemblPlants; EMJ15728; EMJ15728; PRUPE_ppa015369mg. DR Gramene; EMJ15728; EMJ15728; PRUPE_ppa015369mg. DR KEGG; pper:PRUPE_ppa015369mg; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 128 128 {ECO:0000313|EMBL:EMJ15728.1}. SQ SEQUENCE 128 AA; 14528 MW; 6EDB1C18B99A34B9 CRC64; KYVMCGKRPA NDCVEETSTR SILFESENSC FVKTLTKKLY SVTIPKELAI AEGLVRKKTV KLQDPAGRSW IVKLRVHKSP YLRFDMTKGW AKCCRANQIS QGDTIVFEFV KPSGEIKHRT LGMTNVTN // ID M5X2H2_PRUPE Unreviewed; 206 AA. AC M5X2H2; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ13265.1}; GN ORFNames=PRUPE_ppa011554mg {ECO:0000313|EMBL:EMJ13265.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ13265.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ13265.1; -; Genomic_DNA. DR RefSeq; XP_007212066.1; XM_007212004.1. DR EnsemblPlants; EMJ13265; EMJ13265; PRUPE_ppa011554mg. DR Gramene; EMJ13265; EMJ13265; PRUPE_ppa011554mg. DR KEGG; pper:PRUPE_ppa011554mg; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 206 AA; 23101 MW; 2172345C5D2A362D CRC64; MAEACKQVKI YDRSACEKNV EVAERRSGSP VSLVNKGNQA QVKNEIVELD TEDCENKTID SDRRSCKYPI SEKRPVSFCV QETSTGSILF KSENPCFLVC SRKQHLLYRV TIPNKLAVAE GLRGRDAVIL QDPTGRSWLV ELRVECVNRL DMAIGWTECR KANQISPGDS IIFELVEQGV MQFHIFRGAV RGNRLSVITA APNVKN // ID M5X471_PRUPE Unreviewed; 68 AA. AC M5X471; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ13875.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa018424mg {ECO:0000313|EMBL:EMJ13875.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ13875.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ13875.1; -; Genomic_DNA. DR RefSeq; XP_007212676.1; XM_007212614.1. DR EnsemblPlants; EMJ13875; EMJ13875; PRUPE_ppa018424mg. DR Gramene; EMJ13875; EMJ13875; PRUPE_ppa018424mg. DR KEGG; pper:PRUPE_ppa018424mg; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 68 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 68 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EMJ13875.1}. SQ SEQUENCE 68 AA; 7610 MW; 5A644AE086B8D363 CRC64; HISPVFIKNF NGGSLRKCSL RGPSGKGRAV ELEERENGLF FSKGLQGFVK DHHLEVGNFL VFRYDGES // ID M5X5J5_PRUPE Unreviewed; 220 AA. AC M5X5J5; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ14350.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa025002mg {ECO:0000313|EMBL:EMJ14350.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ14350.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ14350.1; -; Genomic_DNA. DR RefSeq; XP_007213151.1; XM_007213089.1. DR EnsemblPlants; EMJ14350; EMJ14350; PRUPE_ppa025002mg. DR GeneID; 18780702; -. DR Gramene; EMJ14350; EMJ14350; PRUPE_ppa025002mg. DR KEGG; pper:PRUPE_ppa025002mg; -. DR OMA; SEMEVHI; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 109 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 109 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 220 220 {ECO:0000313|EMBL:EMJ14350.1}. SQ SEQUENCE 220 AA; 24761 MW; B6AD6582452A6FD6 CRC64; MVHYNGPSHC KCALRGPTGK WWTVGLEERE DGFYFREGWR RFLTDHSLKV GYFLVFDHQG GPKFDVTIYH PMGCDMRRSI GNSDKPGKRP ATAAAVEETS TGSIVFRSEH PCFIRILGKN QYRMNIPKEL AVAEGLIGKE KVMLKDPNGR SWNVKLRLDN KEHHGGRLLM TQGLVACWQA NNISLGDTIV FELVKRSEME VHIFRTGAGG NMPSVVLDAS // ID M5X838_PRUPE Unreviewed; 198 AA. AC M5X838; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ15250.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa017456mg {ECO:0000313|EMBL:EMJ15250.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ15250.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639078; EMJ15250.1; -; Genomic_DNA. DR RefSeq; XP_007214051.1; XM_007213989.1. DR EnsemblPlants; EMJ15250; EMJ15250; PRUPE_ppa017456mg. DR Gramene; EMJ15250; EMJ15250; PRUPE_ppa017456mg. DR KEGG; pper:PRUPE_ppa017456mg; -. DR OMA; IRWTVEL; -. DR OrthoDB; EOG09361F8P; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 105 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 105 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 198 198 {ECO:0000313|EMBL:EMJ15250.1}. SQ SEQUENCE 198 AA; 22133 MW; 12D465C8D06C02AA CRC64; RIPPKFVKNF NVRPLHKCAL SGPSGIRWTV ELEERENGLF FQDGWQGFVK DHHLEDGDFL VFKYDGESKF KVTIYDRTAC EKNVKVAERS GCPVSLANKG KAQTIPKEVA VTEGLVSKKS MMIQDSTGRS WPVKLRVRGK LSSCRVYMST GLLNFCNANQ IIPGDTAIFE FVKPSLAQIH IFRVGGNSVV LAEPDVKD // ID M5X861_PRUPE Unreviewed; 149 AA. AC M5X861; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ22139.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa025386mg {ECO:0000313|EMBL:EMJ22139.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ22139.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638974; EMJ22139.1; -; Genomic_DNA. DR RefSeq; XP_007220940.1; XM_007220878.1. DR EnsemblPlants; EMJ22139; EMJ22139; PRUPE_ppa025386mg. DR GeneID; 18785669; -. DR Gramene; EMJ22139; EMJ22139; PRUPE_ppa025386mg. DR KEGG; pper:PRUPE_ppa025386mg; -. DR OMA; NDEYWPL; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 149 149 {ECO:0000313|EMBL:EMJ22139.1}. SQ SEQUENCE 149 AA; 16722 MW; B483EEDF26A92263 CRC64; DEMGEPQMED LSTSNPVIEL EGDEFWPLSG KPFFDVVLTK TSIKPMCQLV VPGKFSATLP SCSIPTVLTF RGKNWEMTYH GSSNYKRLDN WKAFAIDNNL KVGDACVFEQ LECSSTRLVF RVQILRGDIP SEFLDKLDGD NVDAPIVLE // ID M5XAI5_PRUPE Unreviewed; 222 AA. AC M5XAI5; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ22964.1}; GN ORFNames=PRUPE_ppb024440mg {ECO:0000313|EMBL:EMJ22964.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ22964.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ22964.1; -; Genomic_DNA. DR RefSeq; XP_007221765.1; XM_007221703.1. DR EnsemblPlants; EMJ22964; EMJ22964; PRUPE_ppb024440mg. DR GeneID; 18788293; -. DR Gramene; EMJ22964; EMJ22964; PRUPE_ppb024440mg. DR KEGG; pper:PRUPE_ppb024440mg; -. DR OMA; MPAPVYK; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 222 AA; 25353 MW; 60BF8D7C8CCECAD3 CRC64; MVAANLSYEE SRRQRMEENK KRMEALNLPQ LAQALKAPSF PKPSPMKRAK PRTVEKQMVV VRRSSRVANL PTPVYKEIAV DPLRMPRRHS TSKHRDFSNR VYASDEARAE ATERAEELES GLGSDHPTFV KPMLQSHVTG GFWLGLPIHF CNKNLPKRDE SVILVDEDGD EYQIVYLANK RGLSGGWRGF AIAHELVDGD ALVFQLIRPK TFKVYIIRVE RT // ID M5XC02_PRUPE Unreviewed; 385 AA. AC M5XC02; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ22961.1}; GN ORFNames=PRUPE_ppb024283mg {ECO:0000313|EMBL:EMJ22961.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ22961.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ22961.1; -; Genomic_DNA. DR RefSeq; XP_007221762.1; XM_007221700.1. DR EnsemblPlants; EMJ22961; EMJ22961; PRUPE_ppb024283mg. DR Gramene; EMJ22961; EMJ22961; PRUPE_ppb024283mg. DR KEGG; pper:PRUPE_ppb024283mg; -. DR OMA; IKENERH; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 385 AA; 43331 MW; B416ACBAB0C10BD7 CRC64; MAKSKLSYEE SRRQRLEENK KRMEALNLPQ LAQALKTTSS PKPSPMKRTK PRTVEKQMVV VVVDRVMIPR KSYSSRHRDL SNRVYASDEA RAEAMERAEN LESGLGSDHP IFVKTMLPSH VSGGFWLGLQ VQFCKEHLPK GDEVMTLIDE DGNEYPTIYL ARKTGLSGGW KGFAVAHDLV DGDALVFQLI RRTVFKVELA RPRTFEKHLV QVRRSTRVSN HSSPVYKELA EGFVEPNKRF CSDEARAAAL HEAQELVSGL GSDNPTIVKT IVPSYISGGF FLCLKRQFCM ENLSKGDEVM TLVDVDGNEY LTRYLAQRFG LSAGWKEFAF AHDLVEGDAL VFQLIRPTAF KVYIVRVKRS EGSSAGSAWV KRSLGIGIRL AYVLQ // ID M5XC50_PRUPE Unreviewed; 567 AA. AC M5XC50; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ23016.1}; GN ORFNames=PRUPE_ppa003541mg {ECO:0000313|EMBL:EMJ23016.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ23016.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ23016.1; -; Genomic_DNA. DR RefSeq; XP_007221817.1; XM_007221755.1. DR EnsemblPlants; EMJ23016; EMJ23016; PRUPE_ppa003541mg. DR GeneID; 18790606; -. DR Gramene; EMJ23016; EMJ23016; PRUPE_ppa003541mg. DR KEGG; pper:PRUPE_ppa003541mg; -. DR OMA; MAGGNTH; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 455 551 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 455 551 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 567 AA; 63256 MW; 71C17A74F79AB217 CRC64; MAEEAQKETS NARRPHFFAF YSADLSSERL KIPERFMIHM EGRTSGLVSL FGPSGNAWNV DLIQKNGDLF FHHGWPAFVR DHFVECGDFL IFRYDGELCF TVLIFDQSAC EKEAAFHSEC GQDSSNFEKY MGRKRGREEA ASSGKLVDGV AKKMRDSSSE EGCGHEGVMC EEATCSKEIK RAEKPGLDIV LCKANASIQN MCGKGDGLNV NGRVCVQMSS AHEIAQSFSS SNPYFVRIMK SFNISGSYTL NIPCKFSVAH LPNCKVKLVL HNWKGESWTV NSVPSTRVHT SHTLCGGWMA FVRYNDIKLG DICIFELVRE CEFRVHVQSG ETSSWLSAEL ALPSIKTFKS LSKIMTGNSP KVHSKSIRKI EKADKIAPKK FQEAAFTNDA RKYGSTSKSL TKVSLSQSKA ASKKLVNHRK KVVEDELNPG SSLRMRLTLD EERAARSFAS CFPSFVKIMK KFNICGSYTL KIPYQFSTEH LPNYKTEIVL RNSKGECWTV NSVPDSKGRV VHTFCGGWMA FVRGNDVNIG DICIFELVGK REMQVHISGV GKKGFDHQDG EATSNAV // ID M5XCS3_PRUPE Unreviewed; 272 AA. AC M5XCS3; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ23917.1}; GN ORFNames=PRUPE_ppa009916mg {ECO:0000313|EMBL:EMJ23917.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ23917.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ23917.1; -; Genomic_DNA. DR RefSeq; XP_007222718.1; XM_007222656.1. DR EnsemblPlants; EMJ23917; EMJ23917; PRUPE_ppa009916mg. DR GeneID; 18793196; -. DR Gramene; EMJ23917; EMJ23917; PRUPE_ppa009916mg. DR KEGG; pper:PRUPE_ppa009916mg; -. DR OMA; GESHEAN; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 179 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 179 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 31145 MW; A7F4FA1B0D036A12 CRC64; MNKHGEHLSD QIHFKLPGGL ESEIKLKRCA GEFWFEKGWP EFSKFCSLDF GSCLVFRYEG KSKFHVLIFD ESGIEIEYPT MPQIEETDEE EDDDMSTKEI LEIEDDDKSV ESLDIETDES LEILVIDEDD DDVKSVESLE SFPLPQEKNR RKPRSSSKPS SSSSSSLRAA VKAANKFVSS HPFFKITLGP SRKAHVPASF RKHFTPVKNQ TARLLVGARL WPVTLIFHPQ NYRFSAGWGA FEKANWLKEG DICIFELMDK KNLALEVNIF RC // ID M5XF16_PRUPE Unreviewed; 315 AA. AC M5XF16; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ17675.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa026046mg {ECO:0000313|EMBL:EMJ17675.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ17675.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639030; EMJ17675.1; -; Genomic_DNA. DR RefSeq; XP_007216476.1; XM_007216414.1. DR EnsemblPlants; EMJ17675; EMJ17675; PRUPE_ppa026046mg. DR GeneID; 18781762; -. DR Gramene; EMJ17675; EMJ17675; PRUPE_ppa026046mg. DR KEGG; pper:PRUPE_ppa026046mg; -. DR KO; K09287; -. DR OMA; NTNIATF; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR017392; AP2/ERF-transcript_factor. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PIRSF; PIRSF038123; PTI6; 2. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 77 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 153 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 77 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 153 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EMJ17675.1}. SQ SEQUENCE 315 AA; 36448 MW; CF3E3E4F73DD526A CRC64; SMDVLNESTS EAANSNKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF NAEEEAAKAY DIASIKFRGL ETITNFNQNQ LKPYMDGDHE TLFLQSHSKA EIVDMLRKHS YTNELEMYKL KLFNAGDDDA ARKRIKCHVN LMEGYDHQRE WLFEKVATPS DVGRLNRMVI PKQHAEKHFP LHLSEELCKG VLLNFEDREG KVWRLRYCYW SSSQSYVLTK GWTRFVKEKK LKAGDVVRFE RSRGEEKKMF IDCRPRNVEV SGLGDMASRV EVEEPLSRVQ EDDGVVRLFG VNIVETCSCI VDNNMCWRLG ARISS // ID M5XFF4_PRUPE Unreviewed; 408 AA. AC M5XFF4; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ17800.1}; GN ORFNames=PRUPE_ppa026804mg {ECO:0000313|EMBL:EMJ17800.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ17800.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639030; EMJ17800.1; -; Genomic_DNA. DR RefSeq; XP_007216601.1; XM_007216539.1. DR EnsemblPlants; EMJ17800; EMJ17800; PRUPE_ppa026804mg. DR Gramene; EMJ17800; EMJ17800; PRUPE_ppa026804mg. DR KEGG; pper:PRUPE_ppa026804mg; -. DR OMA; CDGKVWL; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 408 AA; 46837 MW; B697E7A6F19E2D34 CRC64; MASLHRKIHN RPTFSTNTPH FLKIISKDTC RQSKLRIPNK FLMKYGDDLS NPIFLKLPSG SEWKIELRKW EDKAWLDKGW PKFSKFYSLD YSHSLVFGYE GKSKFCVRIF DRNFTEIAYP LTTPDLKDTD EVDDSESEYD DDFSDDSESE SDFSDDSVEI LDKFLPRSRK SSSSDVDGEQ TMSEMEETDE DYDSVELLDY FPPCLKTRKK SPIAPQPRKK NRTCSISTAE NNIRSVGGSS RSQKFLKRRP QVSRMMNPVT ESGTDRALQR AKAFRSEYPS STVVLHPSYI SAGYLHIGAK FIKEHLLKRS HKNAILRVSD GRTWPVSLGQ QGKGILRFQT GWRKFVQDNQ LEIGDVCVFV LTNAIKRLID VVLFRATEAA KAALLNTCVI LPSFCFRGRP QTPDDQFK // ID M5XFQ4_PRUPE Unreviewed; 432 AA. AC M5XFQ4; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ20338.1}; GN ORFNames=PRUPE_ppa015999mg {ECO:0000313|EMBL:EMJ20338.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ20338.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638974; EMJ20338.1; -; Genomic_DNA. DR RefSeq; XP_007219139.1; XM_007219077.1. DR EnsemblPlants; EMJ20338; EMJ20338; PRUPE_ppa015999mg. DR GeneID; 18787113; -. DR Gramene; EMJ20338; EMJ20338; PRUPE_ppa015999mg. DR KEGG; pper:PRUPE_ppa015999mg; -. DR OMA; ESHNPEM; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 432 AA; 49531 MW; D0A367B2044EB5A1 CRC64; MEFMQRDQKG YSDKEDQDQE DQEEEDIISS KFSSSSHNYN NSNYGSSPKY KATFVPPPLP HHHHQYQQQK PWAVHNHGSP EAINFMDLSL NHEQAAADGA NNNNNWPPNS EREHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSTAND KGLLLNFQDR TGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FERGVGDSGK DSLYIDWRRR PPPPPPPPHH HHHGQYGNCN DRCGGGEGRL YSLLQRPPPS MMSMPLRHHD YFHPSNNVHH PYHHHHHQIM NHQYLQHQIH HQLQVERDQV VHHHHQYPMV IDSVPFVQHG KMSSSGASAG ASTGKRLRLF GVNMECSPNI EEDQTDEHQY QILPSTAIPY NHLPSSSLSA PLELRLPNTI GANQIPLPNT GAADQYLSKK GKSTSLSFYL DS // ID M5XG75_PRUPE Unreviewed; 316 AA. AC M5XG75; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ18060.1}; GN ORFNames=PRUPE_ppa021307mg {ECO:0000313|EMBL:EMJ18060.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ18060.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB639030; EMJ18060.1; -; Genomic_DNA. DR RefSeq; XP_007216861.1; XM_007216799.1. DR EnsemblPlants; EMJ18060; EMJ18060; PRUPE_ppa021307mg. DR Gramene; EMJ18060; EMJ18060; PRUPE_ppa021307mg. DR KEGG; pper:PRUPE_ppa021307mg; -. DR OMA; VHRKKRM; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010373; P:negative regulation of gibberellin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0010116; P:positive regulation of abscisic acid biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0008284; P:positive regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0010262; P:somatic embryogenesis; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 35338 MW; 958BA81F0B9B81CD CRC64; MDQAAAGLIH HEKTEACGLR AGVEADLGLV TAKGDKTSFH GSDRSCSIHD HDDLVHAVTS FGVHRKKRMT RQRRSSIINL HHLTFASSTT TSHVLPSLQP PSSLPPARVI DPTRLRFLFQ KELKNSDVSS LRRMILPKKA AEAHLPALES KEGIPISMDD IDGLHVWSFK YSRFWPNNNS RMYVLENTGE FVNAHGLQLG DFIMVYQDNQ NQNYVIQAKK ASDQDHVYGD ISTMNNGVND LFLDESEANK SSSFYMPTMA MDEDTTAGMS FVYDTTTFSN DSLLDFFGGS MTNYSRNGPL HESFGSVENL SLDDYY // ID M5XIP3_PRUPE Unreviewed; 88 AA. AC M5XIP3; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ25396.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa017317mg {ECO:0000313|EMBL:EMJ25396.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ25396.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ25396.1; -; Genomic_DNA. DR RefSeq; XP_007224197.1; XM_007224135.1. DR EnsemblPlants; EMJ25396; EMJ25396; PRUPE_ppa017317mg. DR Gramene; EMJ25396; EMJ25396; PRUPE_ppa017317mg. DR KEGG; pper:PRUPE_ppa017317mg; -. DR OMA; EASYNTD; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EMJ25396.1}. SQ SEQUENCE 88 AA; 10374 MW; 039A8F669D3585B6 CRC64; YKLLQLIPPA FIKNFNRRRL GKCTMRGPSG KCWAVELEQR QDGLFFHKGW PGFVKDHFIE LEDFLIFCYD GGSEFDVTIY DKTCCEKM // ID M5XJV3_PRUPE Unreviewed; 678 AA. AC M5XJV3; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 33. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002394mg {ECO:0000313|EMBL:EMJ26352.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ26352.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ26352.1; -; Genomic_DNA. DR RefSeq; XP_007225153.1; XM_007225091.1. DR EnsemblPlants; EMJ26352; EMJ26352; PRUPE_ppa002394mg. DR GeneID; 18791598; -. DR Gramene; EMJ26352; EMJ26352; PRUPE_ppa002394mg. DR KEGG; pper:PRUPE_ppa002394mg; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 554 647 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 678 AA; 75515 MW; 86249756F3F3312E CRC64; MTFSASNHPQ GSSRIGTSGD ALYKELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASMH QGSEQQMPSF NLPSKILCKV VNVQLRAEPE TDEVYAQVTL LPEADQSEVT SPDPPLPETP RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAA DLHGNEWHFR HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGENGE LRVGVRRLMR QPSNMPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFLVSV NKYLEAHSHK LSVGMRFKMR FEGEEVPERR FSGTIVGVCD NTSPGWANSE WRSLKVQWDE PSSILRPDRV SPWELEPLVA TTPLNSQPAL RNKRARPPVL PSPSPDLSAL GEWKSQVESP SAFSYSDPQR GRDIYPSPKY NSASKVNSLC FTGNNSLAAV SGNSMFWSNR VDGVTESFSP VTNKDCGERR QGTGNGCRLF GIQLLENSNV EESSPVVMVS GKLGDIRPIS SFDAESDQHS EPSNVNRSDL PSGSCDAEKS CLRSPQESQS RQIRSCTKVH MQGIAVGRAV DLTRFERYKD LLKKLEEMFD IEGELCGSTK KWQVVYTDDE DDMMMVGDDP WHEFCSMVRK IFIYTIEEVK RLSPKIKLTL NEEVKPGKPD SEAAVNTEDQ SSIVGPAY // ID M5XL24_PRUPE Unreviewed; 1139 AA. AC M5XL24; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa000479mg {ECO:0000313|EMBL:EMJ26624.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ26624.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ26624.1; -; Genomic_DNA. DR RefSeq; XP_007225425.1; XM_007225363.1. DR EnsemblPlants; EMJ26624; EMJ26624; PRUPE_ppa000479mg. DR GeneID; 18788345; -. DR Gramene; EMJ26624; EMJ26624; PRUPE_ppa000479mg. DR KEGG; pper:PRUPE_ppa000479mg; -. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1026 1110 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 577 604 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1139 AA; 126163 MW; 85AE95916F1AB0A4 CRC64; MKPPANGAGA AAANGPSNSC EGGENVKIIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKDALL RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ LSLGMRFRMM FETEESGTRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERRNRV SMWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEESSDLDN LFKRTMPWLG DDMCMKDPQV LPGLSLVQWM NMQQNSSAGN SIQPNYMHSF PGSALQNLAG ADLSRQLGMS GPQIPQLSNL QFNAQRLPQQ AQQLDQLQKL PSTMNPLASM IQRQQQLGDI TQQPRQNSFN QSLPSSQVQS QLLQPQTLVQ TNSILQQQSS SQNHLQRNLP QNLQQHQQQQ QQQLHQQQQQ HQQQQQQHQQ QQQHQQQIAG QNQQQFQSQL PDQINQQLQH LSDNQLQLQL LQKLQQQQQS LLTQQAQQQP AQLIQLQDQQ RQLLDVSQSF SRPLTPTQMQ EMPQMAPTSH PHSRTMPQQL TKNNNSQTNV RFSQPPQQPK LQQQQPVMVP EMSGHMGLHP TPTTNQLSTA VSNVMTGGAG AGQSGITDEV PSCSNSPSTN NCPSLIQPLM NNRAHRNSFV GEDMAQSATT ILSPSAIETM PSNGNLLKDF QLKSDVKPSV NIASNQSQGI LTAQTYLNSA AVQTDYLDTS SSTTSVGLSQ NDVNLQQNNA PLSFNPQSML FREASQEGEV QADHRNNVSY GSNIDGQLGI PLNPDPMLAK GTVALGKDFS NNLSSGGMIG NYENAKDAQQ ELSSSMVSQS FGVPDMAFNS IDSTINDSGF LDTGPWAPAP QFQRMRTYTK VYKRGAVGRS IDIARYSGYG ELKQDLARRF GIEGQLEDRG RVGWKLVYVD HESDVLLVGD DPWEEFVNCV RCIKILSPQE VQQMSLDGDF GGNAVLLNQA CSSSDGGNA // ID M5XM27_PRUPE Unreviewed; 953 AA. AC M5XM27; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa000946mg {ECO:0000313|EMBL:EMJ26551.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ26551.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ26551.1; -; Genomic_DNA. DR RefSeq; XP_007225352.1; XM_007225290.1. DR EnsemblPlants; EMJ26551; EMJ26551; PRUPE_ppa000946mg. DR Gramene; EMJ26551; EMJ26551; PRUPE_ppa000946mg. DR KEGG; pper:PRUPE_ppa000946mg; -. DR KO; K14486; -. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 838 922 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 953 AA; 104131 MW; EDA1775C5013F51A CRC64; MGSVEEKIKA GGLLSGAQSS ILDEMKLLKE LQDHSGSRKA INSELWHACA GPLVCLPQVG SLSYYFPQGH SEQVAVSTKR TATSQIPNYP NLPSQLLCQV QNVTLHADKE TDEIYAQMSL KPVNSEKDVF PVPDFGLKPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDFTM QPPSQELVVR DLHDNSWTFR HIYRGQPKRH LLTTGWSLFV GAKRLRAGDS VLFIRDEKSQ LMIGVRRANR QQTTLPSSVL SADSMHIGVL AAAAHAAANR SPFTIFYNPR ACPSEFVIPL ATYQKAIYGT QLSVGMRFGM MFETEESGKR RYMGTIVSTS DLDPLRWPGS KWRNLQVEWD EPGCCDKQNR VSSWEIETPE NIFIFPSLTS SLKRPSHTGF LGAETEWGNL IKRPFIRVPE IGNGNSFPYS ISNLCSEQLV NMLLKPQLVN HAGTLAALQQ QSPANGDLIA DMKAMQAKLI QKNPGVFSEG TSLQSQNPPQ SSLDQSATID VNTTSHAILP GKLNNLTKFG SQAPVGNSTD KTKLETDFSA DQLSQLNSTG LGIEDKLAAG FVSPYNLVNQ LTFANQNQSA AQLQTSPRPM QPPLESLLYH SQQTDMPNSD FNSTNGSLPF LDNDECIFYQ SYQPFAGTLR SQGPLSVFGL QDSSAVLTEA NNSSLTSIGQ EMWDNSLNNC RLLPQVDQLT SSHQGPGSLN CISNSSSLRD LSDESNNQSG IYGCPNVDVG SGVSAVIDPS VSSTILDEFS TLKNADFHNP SDCLLGNLSS SQDLQSQITS ASLGDSQAFS RQDLADNSGG TSSSNIDLDE SSLLQNNGSW HQVVPPVRTY TKVQKTGSVG RSIDVTSFKN YEELCSAIEC MFGLEGLLND PRGSGWKLVY VDYENDVLLV GDDPWEEFVG CVRCIRILSP TEVQQMSEEG MKLLNSAAMQ GINGTMSEGS ETR // ID M5XNJ0_PRUPE Unreviewed; 118 AA. AC M5XNJ0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ27066.1}; GN ORFNames=PRUPE_ppa013524mg {ECO:0000313|EMBL:EMJ27066.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ27066.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ27066.1; -; Genomic_DNA. DR RefSeq; XP_007225867.1; XM_007225805.1. DR EnsemblPlants; EMJ27066; EMJ27066; PRUPE_ppa013524mg. DR Gramene; EMJ27066; EMJ27066; PRUPE_ppa013524mg. DR KEGG; pper:PRUPE_ppa013524mg; -. DR OMA; EGAHELE; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 108 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 118 AA; 13966 MW; 13A342295EAE888B CRC64; MEGAHELEKE LTETDVRHKL VVPVRWLDEM PPFERGCHEV QFGVLDDKGF HFPLCCSIRN GGYRKPVLQA EGWLRFVNYK GLKIGDKIIF RPQIDHFRET KFQVRAQRQN IHGHWVDI // ID M5XS24_PRUPE Unreviewed; 698 AA. AC M5XS24; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 32. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa002230mg {ECO:0000313|EMBL:EMJ21825.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ21825.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638974; EMJ21825.1; -; Genomic_DNA. DR RefSeq; XP_007220626.1; XM_007220564.1. DR EnsemblPlants; EMJ21825; EMJ21825; PRUPE_ppa002230mg. DR Gramene; EMJ21825; EMJ21825; PRUPE_ppa002230mg. DR KEGG; pper:PRUPE_ppa002230mg; -. DR KO; K14486; -. DR OMA; ISVNKYM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 77559 MW; D9DCB1656248C82C CRC64; MAHLECDSSI SRAETGFGGG DLYTELWKLC AGPLVDVPRP GERVFYFPQG HMEQLEASTN QELNQQIPLF NLPSKILCRV VHIHLLAEQE TDEVYAQITL HPEADQSEPT SPDPCIPEPS KPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMIQ ATPTQELNAK DLHGYEWKFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSHMPSSVI SSQSMHLGVL ATASHALMTR TLFVVYYKPR TSQFIIGLNK YLEAINNKFS VGMRFKMRFE GEESPERRFT GTIVGVGDLS SQWSESKWRS LKIQWDEHAA VQRPERVSFW EIEPFVASAP IHLVQPVVKS KRPRPVEISS SEITTNSPAS AFWYHGSTQT VELNQLGGVP EVQSSGSQVV WPLRQKESNS SSYSSSRVYS EGIWPSSPHV NVSLSLFPDS KEGNKNVTTG SVLSSVASPV SSKASSKPSN TPIPGQVGKE KKSDSSDLWL FGYNLTNNSK TASPPESEPV CKAMSCGGKG PTTAAAFEVY QDLDVSKLSK EQKQVISEAS PGETQGKQGL TLSTRTRTKV QMQGVAVGRA VDLTSLKGYD NLIDELEKMF EIKGELRPQN KWAVVFTDDE NDMMLMGDDQ WLDFCKLVKK IFIYSSDEVQ KMNRCKLQNS SLDCEGTVSV DSEHRCET // ID M5XUX6_PRUPE Unreviewed; 118 AA. AC M5XUX6; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ22915.1}; GN ORFNames=PRUPE_ppb014811mg {ECO:0000313|EMBL:EMJ22915.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ22915.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ22915.1; -; Genomic_DNA. DR RefSeq; XP_007221716.1; XM_007221654.1. DR EnsemblPlants; EMJ22915; EMJ22915; PRUPE_ppb014811mg. DR Gramene; EMJ22915; EMJ22915; PRUPE_ppb014811mg. DR KEGG; pper:PRUPE_ppb014811mg; -. DR OMA; EQGSHEF; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 107 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 118 AA; 13758 MW; A79A82C093B177C9 CRC64; MAARYEKCLT ETDVGSRFAL PISWLSVLPP IEQGSHEFHL QVTDGFGFFW EFCCSIRRVG RYRKPVFQSE GWLKFVNHKG LKVGDKIVLD SEANDFRGTQ FRIRAQKLNK ECDQWLDV // ID M5XWR9_PRUPE Unreviewed; 218 AA. AC M5XWR9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ26153.1}; GN ORFNames=PRUPE_ppa021314mg {ECO:0000313|EMBL:EMJ26153.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ26153.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ26153.1; -; Genomic_DNA. DR RefSeq; XP_007224954.1; XM_007224892.1. DR EnsemblPlants; EMJ26153; EMJ26153; PRUPE_ppa021314mg. DR Gramene; EMJ26153; EMJ26153; PRUPE_ppa021314mg. DR KEGG; pper:PRUPE_ppa021314mg; -. DR OMA; KSIAVTE; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 133 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 133 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 218 AA; 24720 MW; 1B43C35665B8EFC6 CRC64; MDKKLKCPLE RPSFRVFLVG DDFSQHLRIP PAFIKNFNGR RLGKCTMRGP TGKCWAVELE QRRDGLFFHK GWPGFVKDHF IESEDFLIFD YDGGSEFDVT IYDKTCCEKD LIPKSIAVTE GLMSSEGILI KETIMLQDRT GRSWLVQLDV TSDGRLVMKR GWTTCRETNQ ISHGDTIIFE FVKQGVILLH IFRGRGEGGS SSVVVLSGVL PRKSSQNP // ID M5XYJ1_PRUPE Unreviewed; 600 AA. AC M5XYJ1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PRUPE_ppa003136mg {ECO:0000313|EMBL:EMJ26888.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ26888.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ26888.1; -; Genomic_DNA. DR RefSeq; XP_007225689.1; XM_007225627.1. DR EnsemblPlants; EMJ26888; EMJ26888; PRUPE_ppa003136mg. DR GeneID; 18788918; -. DR Gramene; EMJ26888; EMJ26888; PRUPE_ppa003136mg. DR KEGG; pper:PRUPE_ppa003136mg; -. DR OMA; IDPKIWR; -. DR OrthoDB; EOG09360FAD; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 66198 MW; 7C720A6BF66527AF CRC64; MPPTPHPPPH HHPHSHSHSP HRPIDPKIWR ACAGNSVQIP ILHSRVYYFP QGHLEQSSSS APLLLSPLVL SKPLILCRIS AVHFLADPTT DEVFAKLLLL PIPNHEPTNR HEPPNDDVFD DADETDKVVS FAKILTPSDA NNGGGFSVPR FCADSIFPAL NYQAEPPVQT LSVTDLHGIV WDFRHIYRGT PRRHLLTTGW SKFVNHKMLV AGDSVVFMRN SRGEMFVGVR RAVRSTVSSD CASRWSSPIG GGATTTMRLK TEDQEGSGRK VMSAEAVVGA AEMAAAGRPF EVVYYPKAGW SDFVVKAEVV EKALNVFWSA GMRVKMSVET EDSSRMTWFQ GTLSSVSIPD NGPWQRSPWR MLQVTWDEPE VLQNAKRVSP WQVDYVASTP SIHTAFPPAK RFRAPMSPGL LTNAEEEFFF PVPGAPNSTM GQSNASLLNY NTFPAGMQGA RQDLYCVSNL SHLLSENTPQ MCPYNSFGNN VVPKLKRVST ELNIGSSQSD ELSLDSQSSV HSFGTELDGN RYCNSTKVGR SSFQLFGKII HMNQPVEGGF DDVGCTEDNG NKGYNATEGV NNQLDLSYSK LLERLDVQYQ RASAVEACSL // ID M5Y2Y0_PRUPE Unreviewed; 421 AA. AC M5Y2Y0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ28668.1}; GN ORFNames=PRUPE_ppa006243mg {ECO:0000313|EMBL:EMJ28668.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ28668.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ28668.1; -; Genomic_DNA. DR RefSeq; XP_007227469.1; XM_007227407.1. DR EnsemblPlants; EMJ28668; EMJ28668; PRUPE_ppa006243mg. DR GeneID; 18788511; -. DR Gramene; EMJ28668; EMJ28668; PRUPE_ppa006243mg. DR KEGG; pper:PRUPE_ppa006243mg; -. DR KO; K09287; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 136 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 219 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 136 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 219 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 421 AA; 45813 MW; 3621E493140148E9 CRC64; MDGMSLSSTE ESTTSDSISI SPNNHLLPTT IAVSPIAKSS PHADSLCRLG SGASSVILDS EISSGGGGGI EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAAKAYD VAAQRFRGRD AVTNFKPSPT GTGTDDDDES DDVEAAFLNT HSKSEIVDML RKHTYNDELE QSKRNNYGFL DANGKRARAH GPLGPFGSDR VPKAREQLFE KAVTPSDVGK LNRLVIPKQH AEKHFPLQSG NNFNNHTSTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNNSGVGSNP VPVQQVQMVR LFGVNIFKIP GSGGGAVVDA ATAAIGGGSC NNNINNVGKR MREMELLELE FSKKPRIIGA L // ID M5Y6L7_PRUPE Unreviewed; 118 AA. AC M5Y6L7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ27590.1}; GN ORFNames=PRUPE_ppa023244mg {ECO:0000313|EMBL:EMJ27590.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ27590.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ27590.1; -; Genomic_DNA. DR RefSeq; XP_007226391.1; XM_007226329.1. DR EnsemblPlants; EMJ27590; EMJ27590; PRUPE_ppa023244mg. DR Gramene; EMJ27590; EMJ27590; PRUPE_ppa023244mg. DR KEGG; pper:PRUPE_ppa023244mg; -. DR OMA; KMEANVA; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 95 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 118 AA; 13703 MW; 518DF115CB8E4156 CRC64; MAHLELEKYL TETDIEGRLA VPSEWLKILP PFEKGSFEVQ FEVTDGVGFY WQFCCSIRKE RYPKPVLQSA GWLKFVNAKD LQAGDKVVLD TRADDFRGTK IRIRAQKDLD RNGHWVDV // ID M5Y9R9_PRUPE Unreviewed; 279 AA. AC M5Y9R9; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMJ28840.1}; DE Flags: Fragment; GN ORFNames=PRUPE_ppa018953mg {ECO:0000313|EMBL:EMJ28840.1}; OS Prunus persica (Peach) (Amygdalus persica). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; OC Amygdaleae; Prunus. OX NCBI_TaxID=3760 {ECO:0000313|EMBL:EMJ28840.1, ECO:0000313|Proteomes:UP000006882}; RN [1] {ECO:0000313|Proteomes:UP000006882} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882}; RX PubMed=23525075; DOI=10.1038/ng.2586; RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F., RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A., RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V., RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., RA Dondini L., Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., RA Aramini V., Copetti D., Gonzalez S., Horner D.S., Falchi R., Lucas S., RA Mica E., Maldonado J., Lazzari B., Bielenberg D., Pirona R., RA Miculan M., Barakat A., Testolin R., Stella A., Tartarini S., RA Tonutti P., Arus P., Orellana A., Wells C., Main D., Vizzotto G., RA Silva H., Salamini F., Schmutz J., Morgante M., Rokhsar D.S.; RT "The high-quality draft genome of peach (Prunus persica) identifies RT unique patterns of genetic diversity, domestication and genome RT evolution."; RL Nat. Genet. 45:487-494(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB638913; EMJ28840.1; -; Genomic_DNA. DR RefSeq; XP_007227641.1; XM_007227579.1. DR EnsemblPlants; EMJ28840; EMJ28840; PRUPE_ppa018953mg. DR Gramene; EMJ28840; EMJ28840; PRUPE_ppa018953mg. DR KEGG; pper:PRUPE_ppa018953mg; -. DR Proteomes; UP000006882; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006882}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006882}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 113 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT NON_TER 279 279 {ECO:0000313|EMBL:EMJ28840.1}. SQ SEQUENCE 279 AA; 32155 MW; D9C205E6B12B188D CRC64; IFNPELIGLL FEKKLQNSDV SSTGRIVIPK REAEVHFPVL EGRDGLWMHL DDMDFMHVWT FKFRYWANNT SRMYLLDNTR SLIEIHNLGV GDSLFLFKDD WRRSYVLRAK RDAMREITYP ITQTTLILNP RPPFDHSQVV FGVMDANSSN LLDAIGAVEM SDVPTVVDRL QTTEMEEDNV NVNMDMADAM SFPTFGHQTT EADENIDVDA IAFPSLDEDI DRFFIRPPLC SSDFGTHYTY DHPVDEFFSV GVEQMEPFYG HPGRSPSIEF ESINFSIFD // ID M7Y6G1_TRIUA Unreviewed; 872 AA. AC M7Y6G1; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_28948 {ECO:0000313|EMBL:EMS45463.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS45463.1}; RN [1] {ECO:0000313|EMBL:EMS45463.1, ECO:0000313|EnsemblPlants:TRIUR3_28948-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_28948-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_28948-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD286348; EMS45463.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_28948-T1; TRIUR3_28948-P1; TRIUR3_28948. DR Gramene; TRIUR3_28948-T1; TRIUR3_28948-P1; TRIUR3_28948. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 169 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 728 812 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 67 169 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 872 AA; 96537 MW; 19D59E17E858D3DD CRC64; MESQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGNAS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELVAK DLHGNEWKFR HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR SQTVMPSSVL SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TYPMYSSPFP MRLKRPWPTG LPSLYGTGGK EDDLTSSLMW LRDGANPGFQ SFNFGGLGMS PWMQPMMDSS LLGLQPDMYQ AMSAAAFQNT TKQVSPTLLQ FQQPQNIAGR SALLSSQILQ QVQPQFQEMH HQNINDSAIQ GHNQSEYLQQ QLQRCQSFNG QKSPPPQQQE SHHQHQQQQS QCMQTPQHQQ MQEQKHSPDF QCVPNGLSVF SQLSSTNQSP PSTLQTVSAF SQQQNLQDRN ISSLSPSNVP SMHDTLRPFP SEAGSNLQGV PRTTPVPVSD PWSSKRVAME SVIPSSSHVN SPHIQHLDSA PSNIPQSSSL APLPGRECLV DQDGNSDNQN HLLFGVNIDS QSLLMQGGIP SLQEDNGCIA SLQDDNDSST IPYSTCNFLS PSQNDFPLNE ALASSGCLDE SGYASFSENS DHVNQPTAAF VKVYKSGAFG RLLDITKFSS YHELRSEVGR LFGLDGQLED PARSGWQLVF VDREDDILLV GDDPWQEFVN SVSCIKILTP QEVQQMGKQG IDLLSSAPAR RLGNSCDNYA GRQESRSLST VIASNVASTV NPLHAFIGGQ AS // ID M7YDV6_TRIUA Unreviewed; 976 AA. AC M7YDV6; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 32. DE SubName: Full=Arginyl-tRNA synthetase {ECO:0000313|EMBL:EMS48478.1}; GN ORFNames=TRIUR3_19080 {ECO:0000313|EMBL:EMS48478.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS48478.1}; RN [1] {ECO:0000313|EMBL:EMS48478.1, ECO:0000313|EnsemblPlants:TRIUR3_19080-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_19080-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_19080-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|RuleBase:RU363038}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD250813; EMS48478.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_19080-T1; TRIUR3_19080-P1; TRIUR3_19080. DR Gramene; TRIUR3_19080-T1; TRIUR3_19080-P1; TRIUR3_19080. DR OMA; RFLQIPC; -. DR OrthoDB; EOG09360567; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0004814; F:arginine-tRNA ligase activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006420; P:arginyl-tRNA aminoacylation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 2.40.330.10; -; 2. DR Gene3D; 3.30.1360.70; -; 1. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR001278; Arg-tRNA-ligase. DR InterPro; IPR005148; Arg-tRNA-synth_N. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR008909; DALR_anticod-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd. DR PANTHER; PTHR11956; PTHR11956; 1. DR Pfam; PF03485; Arg_tRNA_synt_N; 1. DR Pfam; PF02362; B3; 2. DR Pfam; PF05746; DALR_1; 1. DR Pfam; PF00750; tRNA-synt_1d; 1. DR PRINTS; PR01038; TRNASYNTHARG. DR SMART; SM01016; Arg_tRNA_synt_N; 1. DR SMART; SM01019; B3; 2. DR SMART; SM00836; DALR_1; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF55190; SSF55190; 1. DR TIGRFAMs; TIGR00456; argS; 1. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|RuleBase:RU363038, KW ECO:0000313|EMBL:EMS48478.1}; KW ATP-binding {ECO:0000256|RuleBase:RU363038}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Ligase {ECO:0000256|RuleBase:RU363038, ECO:0000313|EMBL:EMS48478.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363038}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Protein biosynthesis {ECO:0000256|RuleBase:RU363038}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 628 722 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 854 955 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 628 722 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 854 955 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 976 AA; 109761 MW; 88B78E55814067D7 CRC64; MGGEAAFTSS STPHSQPQET EAIQCRVESV KRHLSRLVVK SLCAVAADFD VEPMLEVSKS GFSDYQCNNA MSLFPRIRES ATNLGNPNAV GQAIADNLPP SRIVESTSVV GPGYVNIVLS SDWIAQEMHV GHIRSTIIGD TLARIFEFAN IEVLRCNHVG DWGTQFGMLI QFLFEKFPNG EEAANQAIGD LQSFYRDAKK KFDEDPDFKG RAQQAVVRLQ RGEDRYLAAW KSICQISRNE FDLVYKRLNV ELEEKGESFY NPYIPRVLEE LTGKGLITES KGARVIEGRK PPLIVVKRDG GFNYASTDLA ALWYRLNVEM AEWIIYVTDV GQQQHFHSVF SAARMAGWLP DQKEEKYPKA SHVGFGFVLG ADGSRFRTRS SDGAVRLVDL LDEAKSQSLA QLIKRLTENG QIAKWTDEEL DKTSEAIGYG AVKYADLKNN RLTDYKFSYE QMLSDKGNTA VYLQYAHARI CSIIQKSNKD VEELKMTEFI TLGHPDERSL GLHLIQFAEV VEQICDDLSP HRLCDYLYTL SERFSQFYTN CQTCQCFMIS REYHDRFLQI PCQPKAACVH ICIGGPESSS LNHHFLLELL CQVHMAGLAS QVKRYCDCYK RYAGHLDGKM RCFRGRMTAN FRHGMGSRSA VNPVIPYKFI DHFGGNISRT IELESRNGSM YTIEVSKLMN ETVLRQHGWE AFVDAHGVEE NDSLLFRHIE KSRFEVLVLD SDDCEKVLPS AGIKVASCNV QESCSMDYID ISSSSGDDTT RSPGSQRFAA CERGDSSHPR KTALKNDSSS EEDSGEDTDA AEEHSEHELS FELDDIRQTP CAGRAYVLSR CGHLSGAQEE RVTRFLQDVR AETPVFVAIM KMSTQNRTIV IPKLFAEEHF PRESQNLTLQ RPGKSKKWHP WFSIRKDRCG HVLTGSRWVG FLRDNGVQEG DLCVFQPVQG TGTRSKFTVH LLHESLGASG STGPKKRVGC CYGRPA // ID M7YE86_TRIUA Unreviewed; 1068 AA. AC M7YE86; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_19224 {ECO:0000313|EMBL:EMS48643.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS48643.1}; RN [1] {ECO:0000313|EMBL:EMS48643.1, ECO:0000313|EnsemblPlants:TRIUR3_19224-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_19224-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_19224-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD250406; EMS48643.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_19224-T1; TRIUR3_19224-P1; TRIUR3_19224. DR Gramene; TRIUR3_19224-T1; TRIUR3_19224-P1; TRIUR3_19224. DR OMA; CKINTEN; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 935 1019 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1068 AA; 119373 MW; 2DB24D87476E64EE CRC64; MAQSPASSAV AASAPCEVLA MYDWEDNSAY VYRKQLDLFL ENPCPKYLVA ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RASPTEFVIP FAKYQKAMYS NQISLGMRFR MMCETEELGT RRYMGTITGI SDLDPVRWKN SQWRSLQVGW DESAAGERRN RVSIWEIEPL AAPFFICPQP FFGVKRPRQL DDESLEMESL MKRAMPWLGE EVCIKDPQTQ SATMPGLSLV QWMNMNRQQS SSLASTAMQS EYLRSASNPA MQNIGAADLA RQLYMQNHLL QQNSMQFNPP KLHQQMKPIN DLSNAALPLN QLSAIRNHQD QKQDQQRQQQ SSIQAIPLSQ AQAQTNIVQA QVILQNQMQQ QQQQKQPPPS PTQNQHGASG QHLLQSHQLQ DQNLQMQQQQ LLLHQQLQQQ QQLNKLPGQL ANLASQQTQL SDQELHLQLL QKLQQQSLMS QSAVTLSRLP IIQEQQNFLV DMQQQLSNSH SLAQQQVMPQ QDCRTSSLQT TQLPPPIQQE QQQQQQQKPS QKQVAPTYVS EAAFAQISST SVIPKTGNAM IVPGAAQSAV TEEIPSCSTS PSTANGNHLA QPTIGRNDHC KTSTEKVPHS IAQMSILTPI EAVSVTPVTT KELPKLNNGV KSSAITSKLP NIVSGLQNFM NNALPTDNLE TASSATSLWP SQTDGLLHQG FATSNFNQHQ MFKDELPDVE IQGVDPSNSA LFGMNNDGPL GFPMETEGLL ENALDSVKYQ NHFSTDDENN YQMQKDARQE ISTSMVSQSF GQSDMAFNSI DSAINDGALM NRSSWPPAAP PQRMRTFTKV YKRGAVGRSI DIGRFSGYGE LNQALARMFG IEGQLEDRQR IGWKLVYTDH EDDVLLLGDD PWEEFVNCVK CIRILSPQEV QKMSLDGDLG SNVLPNQACS SSDGGNTWKP RYEQNSGNPS IGPYDQFE // ID M7YG27_TRIUA Unreviewed; 1072 AA. AC M7YG27; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_10132 {ECO:0000313|EMBL:EMS45696.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS45696.1}; RN [1] {ECO:0000313|EMBL:EMS45696.1, ECO:0000313|EnsemblPlants:TRIUR3_10132-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_10132-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_10132-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD283315; EMS45696.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_10132-T1; TRIUR3_10132-P1; TRIUR3_10132. DR Gramene; TRIUR3_10132-T1; TRIUR3_10132-P1; TRIUR3_10132. DR OMA; GSKQPTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 277 379 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 938 1022 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 277 379 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1072 AA; 117672 MW; D4D75C862514E0B8 CRC64; MPGVPLHVLA PASVAPRRGP AGAGRPRFMF FSFSMDAFFL KHVWLVGMEN NTSFVSKLDE AAAEDGGASL GAEGEVGRCC WERGAALSSQ LLRVPAASRR SWVFLASVAS LDGEKALHVR DAAVPPGKRW YISSHGPLIN SAVQFSTCTP VCISSGLRIV ECADREQRCL NSELWHACAG PLVSLPAVGS RVIYFPQGHS EQVAASTNKE VDAQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPEEQKEP FLPIELGAAS KQPTNYFCKT LTASDTSTHG GFSVPRRSAE KVFPPLDFSL QPPCQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNDNNQ LLLGIRHANR PQTIMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKSVYHT RVSVGMRFRM LFETEESSVR RYMGTITTIS DLDSVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPTAFP LRLKRPWASG LPSMHGMFNG RLINVTRIAV YVVLLLYNST KCPFNQVLFC IICAGVKNDD FARYSSLMWL GDGDRGAQSL NFQGVGASPW LQPRMDSPLL GLKPDTYQQM AAAALEEIRT GDPSKQSSAL LQFQQTQNPN GGLNSVYANH VLQQMQYQAQ QSSLQTVQHG HSQYSGNPGF LQSQFQQLHL HNPPAPPQQG HQVIQQSHQE MQQQLSSGCH RISDVDSSMP GSESASQSQS SFYQQNLLEG NNDPSLHLHN GFRNFSSQDS SNLVSLPRTD QLMAPEGWPS KRLAVEPLGH IESRSVQPKH ENVNHQSNMS HFAGTLAPQS ARDSSSVQAY GANVDNQFLS SSFAFQDGMA GARGGSSSGT VSMAIPLLRY SGEDLPPADT LATSSCLGES GTFNSLDNMC GVNPSQDGTF VKVYKSGSPG RSLDITRFSS YYELRSELEH LFGLEGQLED PVRSGWQLVF VDRENDILLV GDDPWQEFVN SVGCIKILSQ QEVQQMVRGG EGLLSSAPGA RMAQGNVCDG YSGGHDLQNL TGNMASVPPL DY // ID M7YIC6_TRIUA Unreviewed; 569 AA. AC M7YIC6; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_14814 {ECO:0000313|EMBL:EMS50168.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS50168.1}; RN [1] {ECO:0000313|EMBL:EMS50168.1, ECO:0000313|EnsemblPlants:TRIUR3_14814-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_14814-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_14814-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD234201; EMS50168.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_14814-T1; TRIUR3_14814-P1; TRIUR3_14814. DR Gramene; TRIUR3_14814-T1; TRIUR3_14814-P1; TRIUR3_14814. DR OMA; ARMGSHE; -. DR OrthoDB; EOG0936082M; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 173 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 569 AA; 62576 MW; A99B2213FD688A17 CRC64; MESRAGVGLT PTRARMGSHE SQMTRRVAAR PHGMQRRLSA RVARATGESG RGGDRRATAR GARLSRWPRR AAELKAEEGG SPWDVTGPLL CGFFHVNNDF GGRLGFRVSR GGMCFHTLFN LADAATDEVY ARLALVADAE MFRQNVRESA SEEGEDGMAG GDGEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA PLDYKQVRPS QELVAKDLHG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL RGDDGELRLG VRRAVQLRNE ALFKAVNSNE SKLHTLSAVA SSLENRSIFH VCFDPRSGAS EFIVPYWRFS KSLNHSFSIG MRFKDSNESD DANERSTGLI SGISEVDPIR WPGSKWRCLQ VRWDDGNHCN HQRRVSPWEI ERVGGSISVT DCLSASSSKR AKLYFPQGNL DAPVTDGNGY PDSVETGSFH RVLQGQELLM GSRAHGAARS QSPDVAKFRT PDHQRFSANA RSYIPQQSPV EFPYHSSGFG ESLRFPEKVL GGAGEGDAKE GDADDVVAEC ADPRVLDLFG RGHPAPGALH AIVAAPLGM // ID M7YPU3_TRIUA Unreviewed; 685 AA. AC M7YPU3; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_24520 {ECO:0000313|EMBL:EMS48991.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS48991.1}; RN [1] {ECO:0000313|EMBL:EMS48991.1, ECO:0000313|EnsemblPlants:TRIUR3_24520-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_24520-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_24520-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD248390; EMS48991.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_24520-T1; TRIUR3_24520-P1; TRIUR3_24520. DR Gramene; TRIUR3_24520-T1; TRIUR3_24520-P1; TRIUR3_24520. DR OMA; READPMW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 211 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 211 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 685 AA; 75667 MW; 57E8D6623A41A7F8 CRC64; MIGIDLNTVE DEEEGGPSAE PPRGTVRARA RGLLLVLYGV HNVFEVLTER ACSLQADPAT DEVYAQVSLV VDNEEAKRRM RQGESEEACD GDGEDTGAAK RRARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY NLQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGED GVLQLGVRRA AQLKNVSPFP ALFNQDSSLR SLGNVAHAVA MKSIFHIYYN PRLCESEFIV PYWKFMRSFS QPFSVGMRFK MKYENEDASE RRSTGMITGS RESDLKSHGS KWKCLVVRWD DDVECRRPNR VSPWEIELAG SVSGSHLSSP HSKRLKPCLP QVNPDMLLPS RLGCGSVSSD FAESARFHKV LQGQELLGSK AHDGTVNSAS EASQASEARN FQYSDDRNCS INMCNIPGVP GLGARTPPEN HGFSYHCSGF GESQRFQKVL QGQEVFRPYE GGTLSDAVIR GSSFCQPDGN YTSGATYKWL MSQGCDYRGP VTPAMPQASS PLSVLMFPQT SSKIHGFEYV CRSLDKDDNI RHVTINATQD MGRTSHTLPL WPRLVSGKAV ASCAGTKKLP SIGSAEHEPN DKDVHTNGCK IFGISLTQKV RVCDEVECSS ANCDFQLQPL KPQMSKSRGN SCATVHEQRP AVGMVVDLSA VDTMI // ID M7YSA5_TRIUA Unreviewed; 1008 AA. AC M7YSA5; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 38. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_12386 {ECO:0000313|EMBL:EMS49956.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS49956.1}; RN [1] {ECO:0000313|EMBL:EMS49956.1, ECO:0000313|EnsemblPlants:TRIUR3_12386-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_12386-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_12386-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD236927; EMS49956.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_12386-T1; TRIUR3_12386-P1; TRIUR3_12386. DR Gramene; TRIUR3_12386-T1; TRIUR3_12386-P1; TRIUR3_12386. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 180 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 904 988 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 180 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1008 AA; 111568 MW; 1D86118DC260B7FE CRC64; MAAASQEKQQ QLPTFGGRRR QEGDQLGALA RLRRPARLPA AAREPRLLLP PRPQRAGASQ SFFSTNSPAL FIWFRSLDSI HGMLKFFLIW QVAATTKKTP NSRIPNYPSL PSQLLCQVHN ITMHVGAHGS SSGSGVIGAD KDTDEVYAQM TLQPVNSETD VFPIPSLGSY AKSKHPAEYF CKNLTASDTS THGGFSVPRR AAEKLFPQLD YSMQPPNQEL IVRDLHDNMW TFRHIYRGQP KRHLLTTGWS LFVGAKRLKA GDSVLFIRFP LGEFVRIKRP FLTKVTGFRD EKSQLLVGVR RATNQQTALS SSVLSTDSMH IGVLAAAAHA ASSGSSFTIY YNPRTSPSPF VVPVARYNKA NYIQQSVGMR MAMMFETEES SKRRYTGTIV GVSDSDPMRW PNSKWRNLQI EWDEHGYGER PERVSIWDIE TPENTIVFPS ASLNSKRQCL PGYGVPGLDI ASVNMSPFQR APGNPYGNLQ HMPAVGSELA MMMFLNQSGQ NIGTPLSCHQ SSYSSIIQNV KQNYMPPSTF GHPIGSIKPE SMPSNEVQQQ QQLHAPKMQR GDSESCEVHP ATDSVSASEL HVAGREPRNT DKYPSQSISE QNGKGEPRVK PRRSKKGSSR KTISENSELS SAPSRICDDQ LHVSEAELIS CDTKNVNCGN NEGSSGALTH GDFAGQLQCQ QVEQNELVSP PKLESSISPD GGKSVNSFPN QASFSQFFDG LDWMVQPPYY QDSNGIQSVS ASENIFSPSA NMASTINTDT LETFQNSCLS DCFPNSIQDF VGSPDLHSLT FLSPEMQNLD VRHDGSNVPS TSNSYVQMSF SEDDSGNHME SMQRGMNNIS SCSQPQTTEG FNLGMYSKLP SLKESQVLSL PEIHNSSRGT SSCSMDAAEY SIDRNAKPMK PPVRTYTKVQ KLGSVGRSID VTRYRDYREL RSAIASMFGL QGKLEHPASS DWKLVYVDYE NDVLLVGDDP WEEFINCVRC IRILSPSEVQ QMSENGMQVL NDCIQADQ // ID M7YTG8_TRIUA Unreviewed; 956 AA. AC M7YTG8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_33045 {ECO:0000313|EMBL:EMS50406.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS50406.1}; RN [1] {ECO:0000313|EMBL:EMS50406.1, ECO:0000313|EnsemblPlants:TRIUR3_33045-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_33045-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_33045-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD231865; EMS50406.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_33045-T1; TRIUR3_33045-P1; TRIUR3_33045. DR Gramene; TRIUR3_33045-T1; TRIUR3_33045-P1; TRIUR3_33045. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 92 194 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 888 956 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 92 194 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 956 AA; 106945 MW; 88478AA3A0892D1E CRC64; MPPVGSLVVY FPQGHSEQVA ASMHKEVDII PNYPSLPSKL ICKLLSLTLH ADSETDEVYA QMTLQPVNKY DRDAMLASEL GLKQNKQPVE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELMAKDLHDI PWKFRHIFRG QPKRHLLTTG WSVFVSTKRL LAGDSVLFIR DEKSQLLLGI RRATRPQPAL SSSVLSSDSM HIGILAAAAH AAANSSPFTI FYNPRASPSE FVIPLAKYNK ALYTQVSLGM RFRMLFETED SGVRRYMGTI TGIGDLDPVR WKNSHWRNLQ VGWDESTASE RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGMPDDEG EVDSAFKRAM PWLGDDFALK DVQSQLFPGL SLVQWMAMQQ NPQMLPAGAP AVQAPYLNSS AMAMQDGTGT GNDDLMRRFN MQSQNISLPN SQVGSKMDHA AMAQHQQQSH QLQQQQQQQQ EHLQRQQSLP QQQQEHLQRQ QSQPQQQLKT AASMPSMEQH KLREQQPQGG QAVSQAQMLS QIFQPSSSQL QQLGLPKSPT QRPGFPGLPT ASSLQQPALG QAPQVQQAAE YQQALLQSQQ QQLQQLSQPE MQLQLLQKIQ QQNMLSQLNP QHQSQLMQQL SQKNQEYLQQ QILQHQLSGS DAMVQFKQSH QTPSNNITGS LTPQQLARSH SALAESEDPS SSTAPSANRL SPMNSLSRTH QGSRNLTDMT TSPHIDNLLQ EIQSKPDNRN KNDLQSSKET IPVPNRYPVS DQLDASSATS FCLDESPREG FSFPPVCLDS NAQVDPRDNF LIAENVDSLM PDALLSRGMG SGKDICNLPS GQRDHREVDN ELSSAAFSSQ SFGVPDISFK PGCSGDIAVN DGGMPSQGLW NNQTQRMRTF TKVQKRGSVG RSIDITRYTN YDELRHDLAC MFGIQGQLED PYRMDWKLVY VDHENDILLV GDDPWE // ID M7YTR3_TRIUA Unreviewed; 257 AA. AC M7YTR3; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_03736 {ECO:0000313|EMBL:EMS50937.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS50937.1}; RN [1] {ECO:0000313|EMBL:EMS50937.1, ECO:0000313|EnsemblPlants:TRIUR3_03736-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_03736-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_03736-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD225934; EMS50937.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_03736-T1; TRIUR3_03736-P1; TRIUR3_03736. DR Gramene; TRIUR3_03736-T1; TRIUR3_03736-P1; TRIUR3_03736. DR OMA; ECELLFP; -. DR OrthoDB; EOG093615LS; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 93 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 93 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 28018 MW; FDF3EC17311E0E35 CRC64; MPQADWARSY LHVPKECELL FPPLQAGGDK QDLLLHDISG NSWNMEHAHR GTMRSLSRYW KNLVREKGVN VRDIIVFVRC PDGRILVDLR RATPVNRDWG GQEVAQASQL AIQGSAFTVT YYPGRGVESF VVPRAVVDAA AERDWEVDMP VRLLPKDEVV HVQQQGSASG VIARGTIGAV VPGATTWRSL QVDWDGSTSS APAATAVNKW QVEPEGSRDA KRRRLSDTVP PVASTAQGGI KLFGRTLVPE GGSGSTS // ID M7YWY8_TRIUA Unreviewed; 857 AA. AC M7YWY8; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_32597 {ECO:0000313|EMBL:EMS51666.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS51666.1}; RN [1] {ECO:0000313|EMBL:EMS51666.1, ECO:0000313|EnsemblPlants:TRIUR3_32597-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_32597-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_32597-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD217432; EMS51666.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_32597-T1; TRIUR3_32597-P1; TRIUR3_32597. DR Gramene; TRIUR3_32597-T1; TRIUR3_32597-P1; TRIUR3_32597. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 718 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 857 AA; 94679 MW; 0539EA8F35C0B178 CRC64; MRLSSPAGAV LPAQAPPSPE VAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPDFTMQPPA QELFAKDLHG NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNDNNQLLLG IRRATRPQTV MPSSVLSSDS MHIGLLAAAA HAASTNSRFT IFYNPRASPC EFVIPLAKYV KAVYHTRISV GMRFRMLFET EESSVRRYMG TITGISDLDD VRWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPTPFPLRLK RPWPTGLPSL HGGKDDDLTS SLMWLRDSAN PGFQSLNFGG AGMNPWMQPR LDASLLGLQP DIYQTMAAAA FQDPTKMSPT MLQFQQPQNM VGRATPLLQS QILQQMQPQF QQQSYLQNMN GTTIQGQAQS EFLQQQLQRC QSFNEQKPQL LQQQESNQQQ SQGMQVPQHQ HMQQQKNMAN YQSAYSQLSP GPQSSPTALQ TALPFSQSQS FSDTNMSSLS PSGAPAMHNT LGPFSSETAS HRSMSRPTAV PVPDSWSSKR VAVESLIPSR PQSTTHMEQL SSTPPSIPQS SALAPLPGRG CLVDQDGSSD PQNHLLFGVN IDSHSLLMQG GLHDENDSTA IPYSTSNFLS PSQHDFSLDQ TLNSSGCLDE SGYVPCSHTP DQVNQPPATF VKVYKSGTYG RSLDITKFSN YHELRRELGR LFGLEGQLED PMRSGWQLVF VDREEDVLLV GDDPWQEFVN SVSCIKILSP QEVQQMGKQG LELLSSAPGK RLGGGGGGSS CDDYASRQES RSLSTGIASV GSVEVEF // ID M7YXA7_TRIUA Unreviewed; 666 AA. AC M7YXA7; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_28704 {ECO:0000313|EMBL:EMS55418.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS55418.1}; RN [1] {ECO:0000313|EMBL:EMS55418.1, ECO:0000313|EnsemblPlants:TRIUR3_28704-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_28704-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_28704-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD170690; EMS55418.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_28704-T1; TRIUR3_28704-P1; TRIUR3_28704. DR Gramene; TRIUR3_28704-T1; TRIUR3_28704-P1; TRIUR3_28704. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 85 187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 562 642 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 85 187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 666 AA; 73186 MW; DDAF9C65C915980E CRC64; MAQPGERSLL LQEPTDSALL AEQIKMFQVP YKILCKVVNV ELKAEAETDE GYAQITLQPE SDQDNLPLIC DPILPETPRP VVHTFCKILT PSDTSTHGGF SVLRRHANEC LPPLDMAMPT PTQEIISKDL HGSEWRFKHI YRGQPRRHLL TTGWSTFVTS KKLMAGDAFV YLRSETGEQR VGVRRLVQKQ STMPASVISS QSMHLGVLAS ASHARKTNSI FVVYYRPRLS QSQYIVSVNK YLQASKTGFT VGMRFRMNFE AEDVPVKKFF GTIVGDGDLS PQWSGSEWKS LKVQWDDSVA ICNGPERVSP WEIDSSDASS PAISALLQSS AKNKRPRETN ENFDLPSQEP TQEFWLSGMT QQHERTYVGS SDPNRISGYH QILWPSSEPA GYGAMSSSSV CQTPLGLGDG WPKDFNPSSQ GVSPTLSEIT QKLNRVASSE GRTPPPWATA LCGGYRAEEP TSKLSCNPTL PLPEQVAPYL PKVAEKAKEP GVVRLFGVNL MENTNNAAAP TAGNASAGAG ETSARVAGSV EGSGQLSAFS KVTKVANESP REIQSQQSNV GRNRVKVQMH GNAVGRAVDL ASLDGYEGLT SELEQMFEIK DIKQNFKVAF TDNEGDTMKV GDDPWMEFCR MVRKIVIYPI EDDKNMDPRQ TSVLAAAPDP DPKANL // ID M7Z5Z0_TRIUA Unreviewed; 316 AA. AC M7Z5Z0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 12-APR-2017, entry version 31. DE SubName: Full=B3 domain-containing protein VP1 {ECO:0000313|EMBL:EMS47815.1}; GN ORFNames=TRIUR3_22986 {ECO:0000313|EMBL:EMS47815.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS47815.1}; RN [1] {ECO:0000313|EMBL:EMS47815.1, ECO:0000313|EnsemblPlants:TRIUR3_22986-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_22986-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_22986-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD255541; EMS47815.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_22986-T1; TRIUR3_22986-P1; TRIUR3_22986. DR Gramene; TRIUR3_22986-T1; TRIUR3_22986-P1; TRIUR3_22986. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 177 261 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 316 AA; 34682 MW; 7531F9C0D2954E09 CRC64; MGGGGTGSAA DDLPRFFMEW LKNNRDCISA EDLRSIRLRR STIEAAAARL GGGRQGTMQL LKLILTWVQN HHLQKKRPRV GAMDQEALPA GGQLPSPGAN PGHEFPAETG CEDAGGGAGG RRQEPAVPAA EGAQAERRRN PRPHRAPQMY LSMDVPVFLL ADRSVATKTR LFFHGWFQKE AETHLPELKT GDGISIPIED IGTSQVWSMR YRFWPNNKSR MYLLENTGDF VRSNELQEGD FIVLYSDVKS GKYLIRGVKV RAQQDLAKHK NASPEKGGAS DVKAGGEDGG CKEKPPHGVR RSRQEAASMN QMAVSI // ID M7ZI10_TRIUA Unreviewed; 675 AA. AC M7ZI10; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_33948 {ECO:0000313|EMBL:EMS52010.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS52010.1}; RN [1] {ECO:0000313|EMBL:EMS52010.1, ECO:0000313|EnsemblPlants:TRIUR3_33948-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_33948-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_33948-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD212440; EMS52010.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_33948-T1; TRIUR3_33948-P1; TRIUR3_33948. DR Gramene; TRIUR3_33948-T1; TRIUR3_33948-P1; TRIUR3_33948. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 675 AA; 74456 MW; 36F2242AEA21E5A6 CRC64; MPRMGGVVVY LPQGHLDHLG DAPAPSPAAV PPHVFCRVVD VTLHADASTA AAVPPHVFCR VVDVTLHADA STDEVYAQLS LLPENEEVVR RMREATEDGS GGEDGETVKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGTEWK FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA IRLKNGSAFP ALYSQCSNLG TLANVAHAVA TKSMFQIFYN PRLSQSEFIV PYWKFTKSFS QPFSVGSRFK MRYESEDAAE RRYTGIITGT GDADPMWRGS KWKCLLVRWD DDGEFRRPNR VSPWEIELTS SASGSHLAAP TSKRMKPYLP HANPEFTVPH GGGRPDFAES AQLRKVLQGQ ELLGYRTHDG TAVATSQPCE ARNLQYIDER GCSNNGSNNV LGGVPSHGVR TPLGIPYHCS GFGESQRFQK VLQGQEVFRP YRGSLVDARM RSGGFHQQDG PYASALLDKW RTQQQHAFGF GSSAPVLPSQ PSLSPPSVLM FQQADPKVSR FEFGQGHLDK NMDDPYARFV SAEAIGRGEQ TLSLRPHLGS EVIDTRVAVE NKGVAPTNSC KIFGISLAEK VRARDEMGCD DGGANYPSST QPLKQQVPKS LGNSCATVHE QRPVVGRAID VQQWI // ID M7ZI54_TRIUA Unreviewed; 788 AA. AC M7ZI54; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 34. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_17755 {ECO:0000313|EMBL:EMS47784.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS47784.1}; RN [1] {ECO:0000313|EMBL:EMS47784.1, ECO:0000313|EnsemblPlants:TRIUR3_17755-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_17755-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_17755-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD255702; EMS47784.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_17755-T1; TRIUR3_17755-P1; TRIUR3_17755. DR Gramene; TRIUR3_17755-T1; TRIUR3_17755-P1; TRIUR3_17755. DR OMA; STMAAIH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 683 776 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 788 AA; 88516 MW; 76E06235535388DB CRC64; MAPPQAPSAG DPLYDELWHA CAGPLVTVPR VGDLVFYFPQ GHIEQVEASM NQVAGNQMRL YDLPSKLLCR VINVELKAEA DTDEVYAQVM LMPEPEQNEM AVDKSTSTTG ATPPRPAVRS FCKTLTASDT STHGGFSVLR RHADECLPPL DMTQSPPTQE LVAKDLHGMD WRFRHIFRAM IIVLTECKST GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGESGELRVG VRRAMRQLSN VPSSVISSHS MHLGVLATAW HAINTKSMFT VYYKPRTSPS EFIIPYDQYM ESVKNNYSIG MRFRMRFEGE EAPEQRFTGT IVGSENLDQL WPESNWRSLK VRWDEPSTIP RPDRVSPWKI EPASSPPVNP LPLSRVKRPR PNVPPVSPES SVLTKEVAAK IDMDSAQAQQ RNQNNMVLQG QEHMTLRTNN LTASNESDAT VQKPMMWSPS PNIGKNHASA FQQRPSMDNW MQLGRCDASS GAQSFGDSQG FFMQTFDEAP NRHGSFKNQF QDHSSARHFS DPYTKMQTEA NEFHFWNSQS TVYGNPRDQS QGFRFEEHPS NWLRQQQQFS PVEQPRVIRP HASIAPVDLE KTREGSGFKI FGFKVDTTSA PSNHLSSTMA AIHEPVLQTQ ASASLTQLQH AHADCIPELS VSTAGTTENE KSIQQAPHSS KDVQSKSHGA STRSCTKVHK QGVALGRSVD LSKFGDYDEL TAELDRMFEF DGELMSSNKD WQIVYTDPEG DMMLVGDDPW EEFCNIVRKI FIYTKEEVQK MNSKSSTPRK EEGCVKPI // ID M7ZPU6_TRIUA Unreviewed; 583 AA. AC M7ZPU6; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_35254 {ECO:0000313|EMBL:EMS65273.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS65273.1}; RN [1] {ECO:0000313|EMBL:EMS65273.1, ECO:0000313|EnsemblPlants:TRIUR3_35254-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_35254-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_35254-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD045736; EMS65273.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_35254-T1; TRIUR3_35254-P1; TRIUR3_35254. DR Gramene; TRIUR3_35254-T1; TRIUR3_35254-P1; TRIUR3_35254. DR OMA; GHERRPP; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 159 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 159 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 583 AA; 63549 MW; BA4953D8CDD4D1C6 CRC64; MHARTHADPA TDEVYARLAM VAEGEVFEKN MGGGRFEGED DMEDGDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ VRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE LRLGVRRAIQ LKNEALLKSF NSNSSKIHTL SAVANSLKHR SVFHICYNPR AAASEFIVPY WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR SGIITGINEV DPIRWTGSKW KSLQVRWEDG TDCNSQNRLS PWDIEIVGGS VSIAQSLSAS SSKRTKLCPQ GNVDVPTLYG NGRPDSVGAD KLPRVLQGQE LMGSGTHRVT CPPQPGGATE FRRSDGTGFL ADTRSCMLSG PASRLPPQSP YFAYQPVGFG ESVGFPEVLQ GQEVCQTVPL FQGMVSDTCS AKGGYGLYNY MCTSSAMNRG FSSAAQGYPL SLSTPPPAEV ASPSSTVAAP QLWLASKNNE EAAIGSQPNP LGTRKASGDG AAKLGSDGRK VARTSCMLFG FSLTEKMLPT EEDCAKEGNH EVDCQNPRML DLFGYNRATP GALHALCAAP LGI // ID M8AD15_TRIUA Unreviewed; 766 AA. AC M8AD15; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 35. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_02890 {ECO:0000313|EMBL:EMS58454.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS58454.1}; RN [1] {ECO:0000313|EMBL:EMS58454.1, ECO:0000313|EnsemblPlants:TRIUR3_02890-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_02890-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_02890-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD132721; EMS58454.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_02890-T1; TRIUR3_02890-P1; TRIUR3_02890. DR Gramene; TRIUR3_02890-T1; TRIUR3_02890-P1; TRIUR3_02890. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 636 729 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 73 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 766 AA; 85791 MW; 5DA47F927EEBB442 CRC64; MNQVAANQMR LYDLPSKLLC RVLNVELKAE ADTDEVYAQV MLMPEPEQSE ATTDKSSPAT GGATPARPAV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT QELVAKDLHG MEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGESGELRVG VRRAMRQLSN IASSVISSHS MHLGVLATAW HAINTKTMFT VYYKPRTSRS EFIIPYDKYM ESVKNIYSIG TRFKMRFEGE EAPEQRFTGT IVGSDNLDQL WPESSWRSLK VRWDESSTIP RPDRVSPWEI EPASSPPVNP LPLSRPKRSR PNVPPASPES SVRTKEGATR ADMDCAQAQR NQNNTALPGQ EQRSNKLTDI NDFDATVQKP MMWSPPPPPN IGKNNSLTFQ QRPSVHNSIQ LGRRETDFKD ASSGAQPFGD SLGFFMQTTF DEAPNRLSSF KNQFQDHSYA RQYADPYLFM HQQPSLTVES SRKMHTENNE LHFWNGPSTA HGNSRDQAQD FRFTEHQSNW LSPQFSRAEQ PRVIRPHASI APIELEKTTE GSDFKIFGFK VDTASAGFNH LNSPMAGTHE PVLQTQPSVS LDHLQTDCSP EVSLSIAGTT ENEKNTQQCP QSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFVDY DELTAELDKM FEFDGELMSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV RKICIYTKEE VQKMNSKPSG PRKEEGSLDG DGASEKAHLP ASSDLNSSQL GCVKAD // ID M8APQ0_TRIUA Unreviewed; 1104 AA. AC M8APQ0; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 05-JUL-2017, entry version 36. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRIUR3_25750 {ECO:0000313|EMBL:EMS62979.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS62979.1}; RN [1] {ECO:0000313|EMBL:EMS62979.1, ECO:0000313|EnsemblPlants:TRIUR3_25750-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_25750-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_25750-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD075139; EMS62979.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_25750-T1; TRIUR3_25750-P1; TRIUR3_25750. DR Gramene; TRIUR3_25750-T1; TRIUR3_25750-P1; TRIUR3_25750. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 184 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 970 1054 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 184 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1104 AA; 123970 MW; A7868C6B879CA555 CRC64; MGFRYVFSGL SAGEKKAPAI NSDLWHACAG PLVQLPPAGS LVVYFPQGHS EQLVGWLLPA LWFALFATDF KLVAKVVGED WGLPAPLFYG LLVAASMQKD VDAHVPNYPN LPSKLICLLH NITLHADLET DEVYAQMTLQ PVTSVYANRV ICILFGLDYD QYGKEALQLS ELALKQARPQ NEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQEIQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF VRDERQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKAVYGNQLS LGMRFRMMFE TEELGTRRYM GTITGINDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SITNPSMQNI GSGDLSRQLC LQNQLLQQNN MQFNTPKLPQ QMQPNNELSK AALPLNQNGA SIKPEEQTQD TSNFQRQQQS MNYTLPLSQA QTSLAQAQVL IQSQMQQQQQ QQQQQPHISQ NQLPAASQPL LSHQQQQHHH QQHQHQQQEQ QHQQQQQQKF LQQQQLLLQQ QQLQQHQHQL QQQQQQQLGK MPAQLPNLSN QQLQLSDQQL QLQLLQKLQQ QQQSLLSQPG VTLAQLPLIQ EQQKLLMDMQ QQLSSSHSLS QQQMMPQQST KIPSQAASLP PPMQPDTTHQ KLPQKQALPA DTLEAAIPTT TSHKFSSANG SPLRMPGATH SVVTEEIPSC STSPSTANGN HLLQPVPGRD QYSSMINTEK APHSTAPMSV PSSLDAVTGA QRMTKELPKL NSNYENHIST DIDNNYRIPK DAQQEISSSM VSQSFGASDM AFNSIDSGIN DGAFLNKSSW PPAPPVKRMR TFTKVYKRGA VGRSIDISQY AGYEELKHAL ARMFSIEGQL EERQRIGWKL VYRDHEDDIL LLGDDPWEEF VNCVKCIRIL SPQEVQQMSL DGDLGSSVVP NQACSSSEGG GNAWRARCDQ NSGNPSTGSY DQFE // ID M8B592_TRIUA Unreviewed; 256 AA. AC M8B592; DT 29-MAY-2013, integrated into UniProtKB/TrEMBL. DT 29-MAY-2013, sequence version 1. DT 07-JUN-2017, entry version 31. DE SubName: Full=B3 domain-containing protein IDEF1 {ECO:0000313|EMBL:EMS68809.1}; GN ORFNames=TRIUR3_27457 {ECO:0000313|EMBL:EMS68809.1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EMBL:EMS68809.1}; RN [1] {ECO:0000313|EMBL:EMS68809.1, ECO:0000313|EnsemblPlants:TRIUR3_27457-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_27457-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_27457-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KD001752; EMS68809.1; -; Genomic_DNA. DR EnsemblPlants; TRIUR3_27457-T1; TRIUR3_27457-P1; TRIUR3_27457. DR Gramene; TRIUR3_27457-T1; TRIUR3_27457-P1; TRIUR3_27457. DR OMA; NICANMT; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 150 249 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 256 AA; 28433 MW; E1E4F07CAE6DFDD6 CRC64; MYISPAGPGP DASTHNAVRQ PPTPRGFADW SASTSAFTSL AVQSTPSTAT ANAYHYSLSP CYAFWTHYML NKNAYSYYPA PNQEHTHPFS LDNNQAKDPG SISSFGIESF NTTSLAPNMS AHMPPMEGPL PTKEPEAPEK FNSGEYQVIL RKELTKSDVA NVGRIVLPKK DAEASLPPLC ERDPVILQMD DMVLPITWKF KYRFWPNNKS RMYILDSTSE FVKTHGLQAG DALIIYKNPV PGKYIVRGEK AIQQTN // ID REM15_ARATH Reviewed; 528 AA. AC O23076; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 07-JUN-2017, entry version 115. DE RecName: Full=Putative B3 domain-containing protein REM15; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 15; GN Name=REM15.15; OrderedLocusNames=At4g00260; ORFNames=F5I10.15; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAB62834.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=AAF02792.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB80784.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF013293; AAB62834.1; ALT_SEQ; Genomic_DNA. DR EMBL; AF195115; AAF02792.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161471; CAB80784.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE81847.1; -; Genomic_DNA. DR PIR; T01545; T01545. DR RefSeq; NP_567162.2; NM_116247.2. DR UniGene; At.54056; -. DR ProteinModelPortal; O23076; -. DR STRING; 3702.AT4G00260.1; -. DR PaxDb; O23076; -. DR PRIDE; O23076; -. DR EnsemblPlants; AT4G00260.1; AT4G00260.1; AT4G00260. DR GeneID; 828225; -. DR Gramene; AT4G00260.1; AT4G00260.1; AT4G00260. DR KEGG; ath:AT4G00260; -. DR Araport; AT4G00260; -. DR TAIR; locus:2126016; AT4G00260. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; O23076; -. DR OMA; RRCKMIL; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; O23076; -. DR PRO; PR:O23076; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; O23076; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 528 Putative B3 domain-containing protein FT REM15. FT /FTId=PRO_0000375109. FT DNA_BIND 3 95 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 135 231 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 279 376 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 425 522 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 528 AA; 60035 MW; 6BAEE4405D1B8126 CRC64; MAHQHFFKPL LPGFHASLTI PVAFFLKYIE GRYEQKTAKL RSDASKRTWE VKIDGQRLTD GWKEFAVSHD LRIGDIVVFR QESDLAFHVT LLGPSCCGIQ YGSCSVEKNN LGDEKKKVKE NPNGEAESSS RDPSCFVANV APSSLRYDLM RFPRGFVRDN GVVGSGEIVL MNEKGRSWNF NLRQKPSNGT VYVRGGWVSF CDANGLKAGD NYTFKLIKRA GTLVLRLLPN EPKEEANEVS LPEEPESDAE RNLEKIQRKE KVKKNVTREA ESSSQDPSCF VANVSPSSLR YDTLYLPKRF MRENGVDKRC GEMILINEKG KSWTLDLKVK KSSGTSLIKR GWRSFCSANG LRAGSIITLK LIKKRATLVL RLIPNEPEEA NEVVSLSTEQ ESDEESIHDE KISRRKSLLS ENRFVTLTLT PYTIQSSLLN ENLLCESMFQ RLPVPFTRMN GINEETKMTL LDKHGVKWLT TLRFEDDKRK RLRMVGGWQG FIQANDVKAN ESIMLELIWE EETSCVLKFC SKVKLEIK // ID ARFC_ARATH Reviewed; 608 AA. AC O23661; O23670; O81087; Q33DU9; DT 13-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 2. DT 05-JUL-2017, entry version 124. DE RecName: Full=Auxin response factor 3; DE AltName: Full=Protein ETTIN; GN Name=ARF3; Synonyms=ETT; OrderedLocusNames=At2g33860; GN ORFNames=T1B8.30; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RX PubMed=9188533; DOI=10.1126/science.276.5320.1865; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "ARF1, a transcription factor that binds to auxin response elements."; RL Science 276:1865-1868(1997). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], CHARACTERIZATION, AND TISSUE RP SPECIFICITY. RC STRAIN=cv. Wassilewskija; RX PubMed=9409666; RA Sessions A., Nemhauser J.L., McCall A., Roe J.L., Feldmann K.A., RA Zambryski P.C.; RT "ETTIN patterns the Arabidopsis floral meristem and reproductive RT organs."; RL Development 124:4481-4491(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] OF 10-109. RC STRAIN=cv. Columbia; RX PubMed=16227452; DOI=10.1105/tpc.105.036533; RA Nishimura T., Wada T., Yamamoto K.T., Okada K.; RT "The Arabidopsis STV1 protein, responsible for translation RT reinitiation, is required for auxin-mediated gynoecium patterning."; RL Plant Cell 17:2940-2953(2005). RN [7] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [8] RP FUNCTION. RX PubMed=10952886; RA Nemhauser J.L., Feldman L.J., Zambryski P.C.; RT "Auxin and ETTIN in Arabidopsis gynoecium morphogenesis."; RL Development 127:3877-3888(2000). RN [9] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [10] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [11] RP INDUCTION. RX PubMed=19956801; DOI=10.1371/journal.pbio.1000251; RA Ng K.H., Yu H., Ito T.; RT "AGAMOUS controls GIANT KILLER, a multifunctional chromatin modifier RT in reproductive organ patterning and differentiation."; RL PLoS Biol. 7:E1000251-E1000251(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. Involved in the CC establishment or elaboration of tissue patterning during gynoecial CC development. {ECO:0000269|PubMed:10952886, CC ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:9409666}. CC -!- DEVELOPMENTAL STAGE: Detected during gynoecium development. CC -!- INDUCTION: Negatively regulated by AHL21/GIK. CC {ECO:0000269|PubMed:19956801}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U89296; AAB62404.1; -; mRNA. DR EMBL; AF007788; AAC23589.1; -; Genomic_DNA. DR EMBL; U78721; AAC69148.1; -; Genomic_DNA. DR EMBL; CP002685; AEC08900.1; -; Genomic_DNA. DR EMBL; AF336917; AAG53998.1; -; mRNA. DR EMBL; AF360313; AAK26023.1; -; mRNA. DR EMBL; AY056365; AAL07251.1; -; mRNA. DR EMBL; AB199791; BAE48151.1; -; mRNA. DR PIR; E84750; E84750. DR PIR; T03278; T03278. DR RefSeq; NP_180942.1; NM_128946.4. DR UniGene; At.10360; -. DR ProteinModelPortal; O23661; -. DR SMR; O23661; -. DR BioGrid; 3303; 8. DR IntAct; O23661; 1. DR STRING; 3702.AT2G33860.1; -. DR iPTMnet; O23661; -. DR PaxDb; O23661; -. DR EnsemblPlants; AT2G33860.1; AT2G33860.1; AT2G33860. DR GeneID; 817956; -. DR Gramene; AT2G33860.1; AT2G33860.1; AT2G33860. DR KEGG; ath:AT2G33860; -. DR Araport; AT2G33860; -. DR TAIR; locus:2057609; AT2G33860. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; O23661; -. DR KO; K14486; -. DR OMA; VRLEDHH; -. DR OrthoDB; EOG09360774; -. DR PhylomeDB; O23661; -. DR PRO; PR:O23661; -. DR Proteomes; UP000006548; Chromosome 2. DR Genevisible; O23661; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; ISS:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0010158; P:abaxial cell fate specification; IGI:TAIR. DR GO; GO:0009850; P:auxin metabolic process; TAS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010582; P:floral meristem determinacy; IMP:TAIR. DR GO; GO:0009733; P:response to auxin; ISS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0010050; P:vegetative phase change; IMP:TAIR. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW Auxin signaling pathway; Complete proteome; Developmental protein; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 608 Auxin response factor 3. FT /FTId=PRO_0000111507. FT DNA_BIND 159 261 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 23 46 Ser-rich. FT CONFLICT 411 411 F -> I (in Ref. 2; AAC23589). FT {ECO:0000305}. FT CONFLICT 530 530 L -> F (in Ref. 1; AAB62404). FT {ECO:0000305}. SQ SEQUENCE 608 AA; 66606 MW; 4BE93292324D354B CRC64; MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR DMLLDIAL // ID VAL3_ARATH Reviewed; 713 AA. AC O65420; F4JJK2; Q9SVT6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 25-JAN-2012, sequence version 3. DT 07-JUN-2017, entry version 93. DE RecName: Full=B3 domain-containing transcription factor VAL3; DE AltName: Full=Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 2; DE AltName: Full=Protein VP1/ABI3-LIKE 3; GN Name=VAL3; Synonyms=HSL2; OrderedLocusNames=At4g21550; GN ORFNames=F18E5.170; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP FUNCTION, AND DISRUPTION PHENOTYPE. RX PubMed=17158584; DOI=10.1104/pp.106.092320; RA Suzuki M., Wang H.H.-Y., McCarty D.R.; RT "Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant RT embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes."; RL Plant Physiol. 143:902-911(2007). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: May be involved in plant development. CC {ECO:0000269|PubMed:17158584}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- DISRUPTION PHENOTYPE: Variegated leaves. CC {ECO:0000269|PubMed:17158584}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA18719.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB36799.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB81262.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL022603; CAA18719.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL035527; CAB36799.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161555; CAB81262.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE84468.1; -; Genomic_DNA. DR PIR; H85245; H85245. DR PIR; T05163; T05163. DR RefSeq; NP_001320023.1; NM_001341497.1. DR UniGene; At.32619; -. DR ProteinModelPortal; O65420; -. DR SMR; O65420; -. DR STRING; 3702.AT4G21550.1; -. DR iPTMnet; O65420; -. DR PaxDb; O65420; -. DR GeneID; 828240; -. DR Araport; AT4G21550; -. DR TAIR; locus:2119652; AT4G21550. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR InParanoid; O65420; -. DR OMA; CASAYEQ; -. DR OrthoDB; EOG0936054P; -. DR PRO; PR:O65420; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; O65420; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0048366; P:leaf development; IMP:UniProtKB. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 713 B3 domain-containing transcription factor FT VAL3. FT /FTId=PRO_0000375119. FT DNA_BIND 328 427 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 713 AA; 79758 MW; 1F22A0240DE3A3A3 CRC64; MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGKFCDV FHQRASGWRC CESCGKRIHC GCIASASAYT LMDAGGIECL ACARKKFALG PNFSPSPSFL FQSPISEKFK DLSINWSSST RSNQISYQPP SCLDPSVLQF DFRNRGGNNE FSQPASKERV TACTMEKKRG MNDMIGKLMS ENSKHYRVSP FPNVNVYHPL ISLKEGPCGT QLAFPVPITT PIEKTGHSRL DGSNLWHTRN SSPLSRLHND LNGGADSPFE SKSRNVMAHL ETPGKYQVVP RFWPKVSYKN QVLQNQSKES ESVVTPLFEK ILSATDTGKR LVLPKKYAEA FLPQLSHTKG VPLTVQDPMG KEWRFQFRFW PSSKGRIYVL EGVTPFIQTL QLQAGDTVIF SRLDPERKLI LGFRKASITQ SSDQADPADM HSPFEVKKSA YITKETPGVE CSSGKKKSSM MITRSKRQKV EKGDDNLLKL TWEEAQGFLL PPPNLTPSRV VIEDYEFEEY EEAPIIGKPT DVAGSTCTEV EGLLISPTTT KHPRHRDGCT CIICIQSPSG IGPKHDRCCS CAVCDTNKRR RRSLLLRREK KQMEKEDNAR KLLEQLNSDN GLHQSANNSE NHERHASPLK VQLDLNFKPE KDEESLPGSN KTTKSETLPH DDTVKSSFTS PSSSSAHSQN NKEDEGKLKT TTEIADTTTT SSM // ID REM9_ARATH Reviewed; 461 AA. AC O81778; Q8RYC9; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1998, sequence version 1. DT 05-JUL-2017, entry version 113. DE RecName: Full=B3 domain-containing protein REM9; DE AltName: Full=Auxin response factor 23; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 9; GN Name=REM9; Synonyms=ARF23; OrderedLocusNames=At4g31690; GN ORFNames=F28M20.120; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RA Ciarbelli A.R., Carabelli M., Ruzza V., Sessa G., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the putative Arabidopsis ARF23."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAD29662.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AJ441294; CAD29662.1; ALT_SEQ; mRNA. DR EMBL; AL031004; CAA19754.1; -; Genomic_DNA. DR EMBL; AL161579; CAB79887.1; -; Genomic_DNA. DR EMBL; CP002687; AEE85945.1; -; Genomic_DNA. DR PIR; T05101; T05101. DR RefSeq; NP_001320107.1; NM_001342105.1. DR UniGene; At.31723; -. DR ProteinModelPortal; O81778; -. DR STRING; 3702.AT4G31690.1; -. DR PaxDb; O81778; -. DR GeneID; 829297; -. DR KEGG; ath:AT4G31690; -. DR Araport; AT4G31690; -. DR TAIR; locus:2124839; AT4G31690. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; O81778; -. DR OMA; SERTWEV; -. DR OrthoDB; EOG093607I9; -. DR PhylomeDB; O81778; -. DR PRO; PR:O81778; -. DR Proteomes; UP000006548; Chromosome 4. DR GO; GO:0009941; C:chloroplast envelope; IDA:TAIR. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0009409; P:response to cold; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 461 B3 domain-containing protein REM9. FT /FTId=PRO_0000375103. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 244 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 230 332 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 461 AA; 51457 MW; EAFA0495BB93374F CRC64; MANASPLSPT NQHFFQPLLP GFQSNLKIPV NYFSEHIEGK HEGKTVTLRT DASERTWEVK MEGHRLTEGW KEFVEAHDLR IGDFVVFRHE GDMVFHVTAL GPSCCEIQYP QSSRHEEGEE SGENEISEKE GEENVQKESD KSSSDLNCFS QSVTHSNISR DAVSVPRDFV KRSGFSKGRH EIVLMNEEGK SWESEVKSYM SGAVYLVGGW TTFCTENKLD VGDSCTFKLL QKAKTPVFQL CSRTKHLPLS FTKVNGLINP GKIILVDKDR AEWSMMLKVD SRGAVYIIGG NDWKSFCAAN EVGAGESLAL ELIQGGVLLN QITTCFQMEQ PSFKAEDGRH KRARVQNRSQ ETDKGAETSR ASTMGPKLEI TEKGEPSRAS TMRPKVEIRE KIAETGEPSR ASNKSSGIEG NLQHTKPCSV KTDQLAKVKE SVVDTLTSIG RFQAELETMK RKLEDSLQEL N // ID REM6_ARATH Reviewed; 493 AA. AC O81782; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1998, sequence version 1. DT 07-JUN-2017, entry version 90. DE RecName: Full=B3 domain-containing protein REM6; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 6; GN Name=REM6; OrderedLocusNames=At4g31650; ORFNames=F28M20.160; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL031004; CAA19758.1; -; Genomic_DNA. DR EMBL; AL161579; CAB79883.1; -; Genomic_DNA. DR EMBL; CP002687; AEE85941.1; -; Genomic_DNA. DR PIR; T05105; T05105. DR RefSeq; NP_194893.1; NM_119314.1. DR UniGene; At.54568; -. DR ProteinModelPortal; O81782; -. DR PaxDb; O81782; -. DR EnsemblPlants; AT4G31650.1; AT4G31650.1; AT4G31650. DR GeneID; 829293; -. DR Gramene; AT4G31650.1; AT4G31650.1; AT4G31650. DR KEGG; ath:AT4G31650; -. DR Araport; AT4G31650; -. DR TAIR; locus:2124889; AT4G31650. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; O81782; -. DR OMA; PWESEVI; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; O81782; -. DR PRO; PR:O81782; -. DR Proteomes; UP000006548; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 493 B3 domain-containing protein REM6. FT /FTId=PRO_0000375100. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 131 226 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 281 378 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 391 490 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 493 AA; 56231 MW; 0F13F7890EFEA920 CRC64; MNNPTLFSPK SPHFFQPLLP GFKSHINIPV KFFSKYIKGK HEGKTVKLRS DSSKRTWKVK IEGHTLTDGW KEFVEAHDLR ISDFVIFKHK GDMFFDVTAL GSSCWESSRK EKEIEENIET EPDQFSSDLT CFSQSVTTSN LMRDSVGVPR DFAKRYGFNI GRHEIVLMNE EGKPWESEVI SYKSGKVIVA GGWKSLCTES KLEVGDSCTF KLLHNAKMPV FRLCSKLPKA GAEARPLKRA RVQRWSQESR SKHDVREKIA EEGEPSRRNR TSNKSTGDQG KLQQTQSCFI FDHVAKSLPR NFVRSDGLIK GSNKIVLMNE GARTWTLILK FRDSRRSFYS RGGWRSFCRE NGLKPGDSVT FKLESSNTKT PLLLFSIAES KSASTKDRTR FLTLTVTPSS IRSSRLYLSK KFISVNKMER AGGKKITLLD KNGEEWPVTL LMDKRYTRMV LGSGLREFCN AIGVKAYESV VLELVWEETT TLPMFKFCSK IKT // ID NGA4_ARATH Reviewed; 333 AA. AC O82595; C3VMM5; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 31-MAY-2011, sequence version 2. DT 12-APR-2017, entry version 95. DE RecName: Full=B3 domain-containing transcription factor NGA4; DE AltName: Full=Protein NGATHA 4; GN Name=NGA4; OrderedLocusNames=At4g01500; ORFNames=F11O4.9; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Landsberg erecta; RA Alvarez J.P., Goldshmidt A., Efroni I., Bowman J.L., Eshed Y.; RT "The NGATHA distal organ development genes are essential for style RT specification in Arabidopsis."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-333. RC STRAIN=cv. Columbia; RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-333. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [6] RP FUNCTION. RX PubMed=16603651; DOI=10.1105/tpc.105.040725; RA Alvarez J.P., Pekker I., Goldshmidt A., Blum E., Amsellem Z., RA Eshed Y.; RT "Endogenous and synthetic microRNAs stimulate simultaneous, efficient, RT and localized regulation of multiple targets in diverse species."; RL Plant Cell 18:1134-1151(2006). RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Regulates lateral organ growth. Functionally redundant CC with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAC62776.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; CC Sequence=ACP18974.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; CC Sequence=CAB77720.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; FJ873734; ACP18974.1; ALT_INIT; mRNA. DR EMBL; AF096370; AAC62776.1; ALT_INIT; Genomic_DNA. DR EMBL; AL161492; CAB77720.1; ALT_INIT; Genomic_DNA. DR EMBL; CP002687; AEE82033.1; -; Genomic_DNA. DR EMBL; BT029520; ABL66776.1; -; mRNA. DR EMBL; AB493670; BAH30508.1; -; mRNA. DR PIR; T01944; T01944. DR RefSeq; NP_192059.4; NM_116380.6. DR UniGene; At.34418; -. DR ProteinModelPortal; O82595; -. DR SMR; O82595; -. DR BioGrid; 12049; 2. DR STRING; 3702.AT4G01500.1; -. DR PaxDb; O82595; -. DR EnsemblPlants; AT4G01500.1; AT4G01500.1; AT4G01500. DR GeneID; 826750; -. DR Gramene; AT4G01500.1; AT4G01500.1; AT4G01500. DR KEGG; ath:AT4G01500; -. DR Araport; AT4G01500; -. DR TAIR; locus:2117007; AT4G01500. DR eggNOG; ENOG410JVZX; Eukaryota. DR eggNOG; ENOG41105EB; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; O82595; -. DR OMA; WNLGRSE; -. DR OrthoDB; EOG09360IMA; -. DR PRO; PR:O82595; -. DR Proteomes; UP000006548; Chromosome 4. DR ExpressionAtlas; O82595; baseline and differential. DR Genevisible; O82595; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009908; P:flower development; IMP:TAIR. DR GO; GO:0048366; P:leaf development; IMP:TAIR. DR GO; GO:1901371; P:regulation of leaf morphogenesis; IGI:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 333 B3 domain-containing transcription factor FT NGA4. FT /FTId=PRO_0000375094. FT DNA_BIND 36 145 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 333 AA; 38512 MW; 196E05E4D2A3C123 CRC64; MNISTMNLDQ ELAEIRASSS DHTNYFYSSE RREHMFDKVL TPSDVGKLNR LVIPKQHAEN FFPLEDNQNG TVLDFQDKNG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL // ID NGA1_ARATH Reviewed; 310 AA. AC O82799; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1998, sequence version 1. DT 07-JUN-2017, entry version 98. DE RecName: Full=B3 domain-containing transcription factor NGA1; DE AltName: Full=Protein NGATHA 1; GN Name=NGA1; OrderedLocusNames=At2g46870; ORFNames=F19D11.25; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=11910074; DOI=10.1126/science.1071006; RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., RA Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., RA Shibata K., Shinagawa A., Shinozaki K.; RT "Functional annotation of a full-length Arabidopsis cDNA collection."; RL Science 296:141-145(2002). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP FUNCTION. RX PubMed=16603651; DOI=10.1105/tpc.105.040725; RA Alvarez J.P., Pekker I., Goldshmidt A., Blum E., Amsellem Z., RA Eshed Y.; RT "Endogenous and synthetic microRNAs stimulate simultaneous, efficient, RT and localized regulation of multiple targets in diverse species."; RL Plant Cell 18:1134-1151(2006). RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [7] RP INTERACTION WITH BRX. RX PubMed=19465596; DOI=10.1242/dev.035444; RA Scacchi E., Osmont K.S., Beuchat J., Salinas P., Navarrete-Gomez M., RA Trigueros M., Ferrandiz C., Hardtke C.S.; RT "Dynamic, auxin-responsive plasma membrane-to-nucleus movement of RT Arabidopsis BRX."; RL Development 136:2059-2067(2009). CC -!- FUNCTION: Regulates lateral organ growth. Functionally redundant CC with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. CC -!- SUBUNIT: Interacts with BRX. {ECO:0000269|PubMed:19465596}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC004411; AAC34233.1; -; Genomic_DNA. DR EMBL; AC005310; AAM15018.1; -; Genomic_DNA. DR EMBL; CP002685; AEC10765.1; -; Genomic_DNA. DR EMBL; AK118045; BAC42676.1; -; mRNA. DR EMBL; BT008534; AAP40361.1; -; mRNA. DR PIR; T02200; T02200. DR RefSeq; NP_566089.1; NM_130254.4. DR UniGene; At.36441; -. DR ProteinModelPortal; O82799; -. DR SMR; O82799; -. DR BioGrid; 4635; 3. DR IntAct; O82799; 3. DR STRING; 3702.AT2G46870.1; -. DR PaxDb; O82799; -. DR EnsemblPlants; AT2G46870.1; AT2G46870.1; AT2G46870. DR GeneID; 819300; -. DR Gramene; AT2G46870.1; AT2G46870.1; AT2G46870. DR KEGG; ath:AT2G46870; -. DR Araport; AT2G46870; -. DR TAIR; locus:2041404; AT2G46870. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; O82799; -. DR OMA; YNLYNHQ; -. DR OrthoDB; EOG09360JAF; -. DR PhylomeDB; O82799; -. DR PRO; PR:O82799; -. DR Proteomes; UP000006548; Chromosome 2. DR Genevisible; O82799; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009908; P:flower development; IMP:TAIR. DR GO; GO:0048366; P:leaf development; IMP:TAIR. DR GO; GO:1901371; P:regulation of leaf morphogenesis; IGI:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 310 B3 domain-containing transcription factor FT NGA1. FT /FTId=PRO_0000375091. FT DNA_BIND 35 141 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 310 AA; 34890 MW; 2E667FC0B3798653 CRC64; MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG KSSLSFDLDQ // ID REM11_ARATH Reviewed; 286 AA. AC P0CAP3; Q9SJ97; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 1. DT 07-JUN-2017, entry version 50. DE RecName: Full=B3 domain-containing protein REM11; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 11; GN Name=REM11; OrderedLocusNames=At2g24681; ORFNames=F25P17.2; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD23881.1; Type=Erroneous gene model prediction; Note=The predicted gene At2g24680 has been split into 2 genes: At2g24680 and At2g24681.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006954; AAD23881.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC07614.1; -; Genomic_DNA. DR PIR; F84639; F84639. DR RefSeq; NP_001189596.1; NM_001202667.1. DR UniGene; At.75547; -. DR ProteinModelPortal; P0CAP3; -. DR STRING; 3702.AT2G24681.1; -. DR PaxDb; P0CAP3; -. DR EnsemblPlants; AT2G24681.1; AT2G24681.1; AT2G24681. DR GeneID; 10723044; -. DR Gramene; AT2G24681.1; AT2G24681.1; AT2G24681. DR KEGG; ath:AT2G24681; -. DR Araport; AT2G24681; -. DR TAIR; locus:6530298183; AT2G24681. DR OMA; EDTGPIF; -. DR OrthoDB; EOG09360BFM; -. DR PRO; PR:P0CAP3; -. DR Proteomes; UP000006548; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 286 B3 domain-containing protein REM11. FT /FTId=PRO_0000375105. FT DNA_BIND 1 70 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 119 219 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 286 AA; 32039 MW; 1E0CF5F75EE54851 CRC64; MAWNLAIITL VGKDGTKLEA TLRRENRGLM CLGNGWKDLS ISNGLKSGKS FTLELILENG TPMLSLVSTQ STSHKSQKRE CSKHSEKESI SAVPSKGKKN RKARSNREER RDSSSAIQNR FVTFTPEDIR DCILILPSQF IKANGINNLG EITLLGQNRM KWFAYLLSMS KDGSLALGSG WKGICEANGV NTGEAFTLEY IDEQETAHGR AQVCFYGVFP GKSVRSFASL RSKWNDLFYD FLREQNLRVN PIIGVAICLC KHHYCNYNSC SLFKPRPKLS QKNLNS // ID REM12_ARATH Reviewed; 446 AA. AC P0CAP4; Q9SJ97; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 1. DT 05-JUL-2017, entry version 51. DE RecName: Full=B3 domain-containing protein REM12; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 12; GN Name=REM12; OrderedLocusNames=At2g24680; ORFNames=F25P17.2; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14993207; DOI=10.1101/gr.1515604; RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., RA Caboche M., Weissenbach J., Salanoubat M.; RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a RT combined approach to evaluate and improve Arabidopsis genome RT annotation."; RL Genome Res. 14:406-413(2004). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=1; CC Comment=A number of isoforms are produced. According to EST CC sequences.; CC Name=1; CC IsoId=P0CAP4-1; Sequence=Displayed; CC -!- SEQUENCE CAUTION: CC Sequence=AAD23881.1; Type=Erroneous gene model prediction; Note=The predicted gene At2g24680 has been split into 2 genes: At2g24680 and At2g24681.; Evidence={ECO:0000305}; CC Sequence=BX819661; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006954; AAD23881.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC07612.1; -; Genomic_DNA. DR EMBL; BX819661; -; NOT_ANNOTATED_CDS; mRNA. DR PIR; F84639; F84639. DR RefSeq; NP_180044.2; NM_128029.2. [P0CAP4-1] DR UniGene; At.50094; -. DR ProteinModelPortal; P0CAP4; -. DR STRING; 3702.AT2G24680.2; -. DR PaxDb; P0CAP4; -. DR EnsemblPlants; AT2G24680.1; AT2G24680.1; AT2G24680. [P0CAP4-1] DR GeneID; 817004; -. DR Gramene; AT2G24680.1; AT2G24680.1; AT2G24680. [P0CAP4-1] DR KEGG; ath:AT2G24680; -. DR Araport; AT2G24680; -. DR HOGENOM; HOG000154088; -. DR InParanoid; P0CAP4; -. DR PhylomeDB; P0CAP4; -. DR PRO; PR:P0CAP4; -. DR Proteomes; UP000006548; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Repeat; Transcription; Transcription regulation. FT CHAIN 1 446 B3 domain-containing protein REM12. FT /FTId=PRO_0000375106. FT DNA_BIND 56 153 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 193 289 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 341 435 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 446 AA; 50208 MW; 8537222E003F3968 CRC64; MVLNSSDLGP SRCDIRDLPA PSSTNDQGKT ELARKKKVKR SNTEIEADAS SSDNSCFVAL VTASNLRKDA LYLPQDLTSS VGLERKYREI VVTDERERRS WALDLRFNKS SDTFYISRGW RSFCDENGKK PGGVFVFKLV GNRETPVLSF CSTESINDGT QGHKNNKYNC MELKSKKKRM RCRDSTSPSQ NRFMTLTLTH DNLIKSRRYL PLSFTRDNGL DKPGMIFLLG KTGRKWEANL LREASGRIVL TGKGWKEFAM ANGLKSGELF TLEAILEKGT PMLSLVNTQS TNYRSQQGEC SRDSEKESSI CAEPSRGNKK WKATNNRKER RDSSSAIQNR YVTLTLTPED VRACTLILPS QFMKANGINK LGKKTLLGQN RKKWFAYLLS KSGFVALGSG WKGFCEANGV KTGESFNLEY IDEQDTTPVF KFCSNSVEYV KFTSLP // ID REM13_ARATH Reviewed; 1045 AA. AC P0CAP5; F4IPS4; Q9SJA0; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 16-NOV-2011, sequence version 2. DT 05-JUL-2017, entry version 53. DE RecName: Full=B3 domain-containing protein REM13; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 13; GN Name=REM13; OrderedLocusNames=At2g24650; ORFNames=F25P17.5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD23895.1; Type=Erroneous gene model prediction; Note=The predicted gene At2g24650 has been split into 2 genes: At2g24645 and At2g24650.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006954; AAD23895.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC07610.1; -; Genomic_DNA. DR PIR; C84639; C84639. DR RefSeq; NP_180041.5; NM_128026.6. DR UniGene; At.39126; -. DR UniGene; At.75301; -. DR ProteinModelPortal; P0CAP5; -. DR SMR; P0CAP5; -. DR STRING; 3702.AT2G24650.1; -. DR PaxDb; P0CAP5; -. DR EnsemblPlants; AT2G24650.1; AT2G24650.1; AT2G24650. DR GeneID; 817001; -. DR Gramene; AT2G24650.1; AT2G24650.1; AT2G24650. DR KEGG; ath:AT2G24650; -. DR Araport; AT2G24650; -. DR TAIR; locus:2046668; AT2G24650. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; P0CAP5; -. DR OMA; RNFCDEN; -. DR OrthoDB; EOG09360BFM; -. DR PRO; PR:P0CAP5; -. DR Proteomes; UP000006548; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 7. DR Gene3D; 2.40.330.10; -; 8. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 7. DR SMART; SM01019; B3; 7. DR SUPFAM; SSF101936; SSF101936; 7. DR PROSITE; PS50863; B3; 7. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 1045 B3 domain-containing protein REM13. FT /FTId=PRO_0000375107. FT DNA_BIND 7 96 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 157 253 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 305 398 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 474 570 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 643 738 TF-B3 5. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 815 910 TF-B3 6. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 940 1035 TF-B3 7. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 148 152 Poly-Ser. SQ SEQUENCE 1045 AA; 117805 MW; D42D654A2053CB08 CRC64; MANSRIYPQF FHTLVPSFHT HLMIPEDFFS EYIEGRSVAE LKLDFSDKSW EVKLSDRRIT DGWEEFVVAN DFRIGDVVAF RYVGNLVFHV SNLGPNYYEI EHNDGESLLR KRLHQVDFSS NNGDVCDSEE LPKEKKAKTN SEEADAVSSS SSADKSCFMA IITALDLTTD TLYLPLHFTS ANGLTRKNRE IILTDGGERS RVLDLRFDES SGTFYISRGW RNFCDENGQK AGGFFLFKLV GKGETLVLSF CPTESINGEE NITREDSKDE CSSLDSLMNI VEKKKYIPKP RGSPYSSYSP SHKQFVTFTL PPDYARIGKL SLSAPFVREN GINKPGEICL LDKHGRKWLT SLLLDSKGTM SLGKGWKEFV KANSLETGFT LKLIWEETTP VLSLCSPESN SDREQEEISK AIEKHSLFID PSNRDKISNN DKEENMSWER KKDHLKSRDS TLSSQKQFVT ITITPSSDRL VSLSNDSCLV VVSLLYFDMR LPKVFTRENG INKPGRITLL GKDGIKQQTN LLFDKANGAM SLGHGWKDFV KDNGLKTGDS FTLKLIWEDQ TPVLSLCPAD CSIDREAGGG RSETNQKKSL PIEPSTCKKI RKDVNIKDDN SKEKNDKEES KSVDGERKYL RGTYLTPSSQ KHFVTLTITP SSIKKDRLIL SPQFARKNNI DKPGMIYLLD TDGTKWLISL QRDKKGTMSL GKGWKEFAEA NDFKLGESFT MELVWEDTTP MLSLLRTEFR SSKANEKESI SSEHKTRESS PTIKNRIVTP ALTPEDVKAC KLILPSQFMK KIRTVDKERN HLKGRDLNPS CQKQFVTFTI TPTCVGKNRL ILSAQFAREN NINQPGTIYL LDTDGRKWLT TVKRDKKGTM SLGKGWKEFA DTKDLKSGDS FTMELIWEDT NPVLSLLRTK FSSSKSNKEE SIFLEPKSRD SSSPTIVNRF VTLALTPEDV TACKLILPSQ FMKANGINNK LGKITLLGEN GVEWPGYMLS LDGTLALGNG WEGFCEANGV KLGQTFTLEF VNEQDTTTTP VLKFSSVETI YKNVN // ID REM10_ARATH Reviewed; 555 AA. AC P0DH85; Q9SHV3; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 21-SEP-2011, sequence version 1. DT 07-JUN-2017, entry version 37. DE RecName: Full=B3 domain-containing protein REM10; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 10; GN Name=REM10; OrderedLocusNames=At2g24700; ORFNames=F27A10.1; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14993207; DOI=10.1101/gr.1515604; RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., RA Caboche M., Weissenbach J., Salanoubat M.; RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a RT combined approach to evaluate and improve Arabidopsis genome RT annotation."; RL Genome Res. 14:406-413(2004). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD26893.1; Type=Erroneous gene model prediction; Note=The predicted gene At2g24700 has been split into 2 genes: At2g24696 and At2g24700.; Evidence={ECO:0000305}; CC Sequence=BX819051; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007266; AAD26893.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC07620.1; -; Genomic_DNA. DR EMBL; BX819051; -; NOT_ANNOTATED_CDS; mRNA. DR PIR; H84639; H84639. DR RefSeq; NP_180046.2; NM_128031.4. DR UniGene; At.50095; -. DR ProteinModelPortal; P0DH85; -. DR SMR; P0DH85; -. DR STRING; 3702.AT2G24700.1; -. DR iPTMnet; P0DH85; -. DR PaxDb; P0DH85; -. DR EnsemblPlants; AT2G24700.1; AT2G24700.1; AT2G24700. DR GeneID; 817006; -. DR Gramene; AT2G24700.1; AT2G24700.1; AT2G24700. DR KEGG; ath:AT2G24700; -. DR Araport; AT2G24700; -. DR TAIR; locus:2047241; AT2G24700. DR eggNOG; ENOG410JT8H; Eukaryota. DR eggNOG; ENOG4110837; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; P0DH85; -. DR OMA; GRFLTIR; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; P0DH85; -. DR PRO; PR:P0DH85; -. DR Proteomes; UP000006548; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 555 B3 domain-containing protein REM10. FT /FTId=PRO_0000375104. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 247 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 276 372 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 460 554 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 63258 MW; 70CBF382DD7AAB5F CRC64; MANPLLYSPI NPQFFQPLLP GFTNHLDIPV AFFLKYLVGT NVGKTAELRS DASEMTWKVK IDGRRLSNGW EDFTIAHDLR VGDIVVFRQE GELVFHVTAL GPSCCEIQYG EDTLEEDKIE KLCGTENVSS KKKSLKREAE SAPDNSLDSC FVATVTGSNL KRDTLYIPKE FALSNGLMNK YQIVLMNEEG ESWKIDLRRE AYNYGRFYMR RGWRSFCIAN GKKPGDVFAF KLVKNEETPM IQLFPMTIED LDKLQSLPRH KIRKTEAAPS SPDLSSFVAT VTASNLSRDR LYLPKTFIMS NGLLKKFQMC LMNEEGESWT IDVKHEAHTG RFLTIRGWRR FCVANGKKPG DLLKFKLVHN EETPVLQLLP LNSEDLHKLN PSNDTRHGQS LKVTKKEFLG MEATENEFLG EEVYCNDSFK ASEKDTLPFA EPINEDIRQG QCSQTIKQEY VSTEEKNSTS QNRFVTLTLT HSSKLNLPFE FMKRNGIKKA GKITMVDRYD AKWRTSLLMD KIGTMSLGRG SKGFCEVNGV EMNESFILEL IWEDTVPLLK FCSKV // ID VIV1_MAIZE Reviewed; 691 AA. AC P26307; DT 01-MAY-1992, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1992, sequence version 1. DT 15-MAR-2017, entry version 95. DE RecName: Full=Regulatory protein viviparous-1; GN Name=VP1; OS Zea mays (Maize). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; OC Zea. OX NCBI_TaxID=4577; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Wisconsin 22; RX PubMed=1889090; DOI=10.1016/0092-8674(91)90436-3; RA McCarty D.R., Hattori T., Carson C.B., Vasil V., Lazar M., Vasil I.K.; RT "The Viviparous-1 developmental gene of maize encodes a novel RT transcriptional activator."; RL Cell 66:895-905(1991). CC -!- FUNCTION: Transcriptional activator specifically required for CC expression of the maturation program in the seed development. CC Probably potentiates the response to the seed-specific hormone CC abscisic acid (ABA). May bind to DNA indirectly. CC -!- SUBCELLULAR LOCATION: Cytoplasm. Nucleus. CC -!- TISSUE SPECIFICITY: Seed. CC -!- DEVELOPMENTAL STAGE: Between 10 and 30 days after pollination. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; M60214; AAA33506.1; -; mRNA. DR PIR; A40024; A40024. DR RefSeq; NP_001105540.1; NM_001112070.1. DR UniGene; Zm.24; -. DR SMR; P26307; -. DR STRING; 4577.GRMZM2G133398_P03; -. DR PaxDb; P26307; -. DR PRIDE; P26307; -. DR GeneID; 542523; -. DR KEGG; zma:542523; -. DR MaizeGDB; 65585; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR HOGENOM; HOG000238595; -. DR Proteomes; UP000007305; Unplaced. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0007275; P:multicellular organism development; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Abscisic acid signaling pathway; Activator; Complete proteome; KW Cytoplasm; Developmental protein; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 691 Regulatory protein viviparous-1. FT /FTId=PRO_0000111528. FT DNA_BIND 517 619 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT REGION 1 121 Transcriptional activation. FT COMPBIAS 1 170 Asp/Glu/Pro/Ser/Thr-rich (PEST region). SQ SEQUENCE 691 AA; 73329 MW; 6B8AB5F8EDF775C3 CRC64; MEASSGSSPP HSQENPPEHG GDMGGAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS STFSSNSSSN SSSAYTNTAG RAGGEPSEPA SAGEGFDALD DIDQLLDFAS LSMPWDSEPF PGVSMMLENA MSAPPQPVGD GMSEEKAVPE GTTGGEEACM DASEGEELPR FFMEWLTSNR ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLQR KRPRDVMEEE AGLHVQLPSP VANPPGYEFP AGGQDMAAGG GTSWMPHQQA FTPPAAYGGD AVYPSAAGQQ YSFHQGPSTS SVVVNSQPFS PPPVGDMHGA NMAWPQQYVP FPPPGASTGS YPMPQPFSPG FGGQYAGAGA GHLSVAPQRM AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSLGQIQT SVHLQEPSPR STHSGPVTPS AGGWGFWSPS SQQQVQNPLS KSNSSRAPPS SLEAAAAAPQ TKPAPAGARQ DDIHHRLAAA SDKRQGAKAD KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE VHLPELKTRD GISIPMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGEFVR SNELQEGDFI VIYSDVKSGK YLIRGVKVRP PPAQEQGSGS SGGGKHRPLC PAGPERAAAA GAPEDAVVDG VSGACKGRSP EGVRRVRQQG AGAMSQMAVS I // ID VIV_ORYSJ Reviewed; 727 AA. AC P37398; A0A0P0VBZ7; B7EMQ0; Q0JGQ2; Q5N7W1; Q5N7W2; DT 01-OCT-1994, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 3. DT 05-JUL-2017, entry version 111. DE RecName: Full=B3 domain-containing protein VP1; DE Short=OsVP1; DE AltName: Full=Protein viviparous homolog; GN Name=VP1; OrderedLocusNames=Os01g0911700, LOC_Os01g68370; GN ORFNames=P0470A12.15-1, P0470A12.15-2; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=8193305; DOI=10.1007/BF00029862; RA Hattori T., Terada T., Hamasuna S.; RT "Sequence and functional analyses of the rice gene homologous to the RT maize Vp1."; RL Plant Mol. Biol. 24:805-810(1994). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [7] RP TISSUE SPECIFICITY. RX PubMed=8673344; DOI=10.1093/oxfordjournals.pcp.a028953; RA Nakagawa H., Ohkura E., Ohmiya K., Hattori T.; RT "The seed-specific transcription factor VP1 (OSVP1) is expressed in RT rice suspension-cultured cells."; RL Plant Cell Physiol. 37:355-362(1996). RN [8] RP INTERACTION WITH RAD23. RX PubMed=9225866; DOI=10.1023/A:1005870227632; RA Schultz T.F., Quatrano R.S.; RT "Characterization and expression of a rice RAD23 gene."; RL Plant Mol. Biol. 34:557-562(1997). RN [9] RP INTERACTION WITH TRAB1. RX PubMed=10611387; DOI=10.1073/pnas.96.26.15348; RA Hobo T., Kowyama Y., Hattori T.; RT "A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid- RT induced transcription."; RL Proc. Natl. Acad. Sci. U.S.A. 96:15348-15353(1999). RN [10] RP SUBCELLULAR LOCATION, AND DEVELOPMENTAL STAGE. RX PubMed=11917085; DOI=10.1093/pcp/pcf040; RA Miyoshi K., Kagaya Y., Ogawa Y., Nagato Y., Hattori T.; RT "Temporal and spatial expression pattern of the OSVP1 and OSEM genes RT during seed development in rice."; RL Plant Cell Physiol. 43:307-313(2002). CC -!- FUNCTION: Probable transcription factor that may participate in CC abscisic acid-regulated gene expression during seed development. CC May be required for seed maturation and dormancy induction. CC -!- SUBUNIT: Interacts with RAD23 and (via N-terminus) with TRAB1. CC {ECO:0000269|PubMed:10611387, ECO:0000269|PubMed:9225866}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:11917085}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=P37398-1; Sequence=Displayed; CC Name=2; CC IsoId=P37398-2; Sequence=VSP_019584; CC Note=No experimental confirmation available.; CC -!- DEVELOPMENTAL STAGE: Expressed in the whole embryo from 2 to 4 CC days after pollination (DAP). At 6 DAP, expressed in the regions CC where the shoot and radicle are developing, and in the aleurone CC layers and the outermost cell layers of the endosperm. Later, in CC the embryo development, expressed in vascular tissue, coleoptile, CC leaf, shoot meristem, radicle, scutellum and epiblast. In mature CC embryo (20 DAP), expression levels decrease. CC {ECO:0000269|PubMed:11917085}. CC -!- SEQUENCE CAUTION: CC Sequence=BAA04066.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; D16640; BAA04066.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP003436; BAD82432.1; -; Genomic_DNA. DR EMBL; AP003436; BAD82433.1; -; Genomic_DNA. DR EMBL; AP008207; BAF07076.2; -; Genomic_DNA. DR EMBL; AP014957; BAS75841.1; -; Genomic_DNA. DR EMBL; AP014957; BAS75842.1; -; Genomic_DNA. DR EMBL; AK073805; BAG93647.1; -; mRNA. DR EMBL; AK105441; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015629318.1; XM_015773832.1. [P37398-1] DR UniGene; Os.7360; -. DR ProteinModelPortal; P37398; -. DR SMR; P37398; -. DR STRING; 39947.LOC_Os01g68370.1; -. DR iPTMnet; P37398; -. DR PaxDb; P37398; -. DR EnsemblPlants; OS01T0911700-02; OS01T0911700-02; OS01G0911700. [P37398-1] DR GeneID; 4324314; -. DR Gramene; OS01T0911700-02; OS01T0911700-02; OS01G0911700. [P37398-1] DR KEGG; osa:4324314; -. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR HOGENOM; HOG000238595; -. DR InParanoid; P37398; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000059680; Chromosome 1. DR ExpressionAtlas; P37398; baseline and differential. DR Genevisible; P37398; OS. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEP:Gramene. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW Abscisic acid signaling pathway; Activator; Alternative splicing; KW Complete proteome; Developmental protein; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 727 B3 domain-containing protein VP1. FT /FTId=PRO_0000111529. FT DNA_BIND 537 638 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 20 30 Poly-Gly. FT COMPBIAS 71 80 Poly-Ser. FT COMPBIAS 683 691 Poly-Ala. FT VAR_SEQ 9 31 Missing (in isoform 2). FT {ECO:0000303|PubMed:12869764}. FT /FTId=VSP_019584. SQ SEQUENCE 727 AA; 75802 MW; 563C2FD5D8FF8160 CRC64; MDASAGSSAP HSHGNPGKQG GGGGGGGGRG KAPAAEIRGE AARDDVFFAD DTFPLLPDFP CLSSPSSSTF SSSSSSNSSS AFTTAAGGGC GGEPSEPASA ADGFGELADI DQLLDLASLS VPWEAEQPLF PDDVGMMIED AMSGQPHQAD DCTGDGDTKA VMEAAGGGDD AGDACMEGSD APDDLPAFFM EWLTSNREYI SADDLRSIRL RRSTIEAAAA RLGGGRQGTM QLLKLILTWV QNHHLQKKRP RTAIDDGAAS SDPQLPSPGA NPGYEFPSGG QEMGSAAATS WMPYQAFTPP AAYGGDAMYP GAAGPFPFQQ SCSKSSVVVS SQPFSPPTAA AAGDMHASGG GNMAWPQQFA PFPVSSTSSY TMPSVVPPPF TAGFPGQYSG GHAMCSPRLA GVEPSSTKEA RKKRMARQRR LSCLQQQRSQ QLNLSQIHIS GHPQEPSPRA AHSAPVTPSS AGCRSWGIWP PAAQIIQNPL SNKPNPPPAT SKQPKPSPEK PKPKPQAAAT AGAESLQRST ASEKRQAKTD KNLRFLLQKV LKQSDVGSLG RIVLPKEAEV HLPELKTRDG VSIPMEDIGT SQVWNMRYRF WPNNKSRMYL LENTGDFVRS NELQEGDFIV IYSDIKSGKY LIRGVKVRRA AQEQGNSSGA VGKHKHGSPE KPGVSSNTKA AGAEDGTGGD DSAEAAAAAA AGKADGGGCK GKSPHGVRRS RQEAAAAASM SQMAVSI // ID RAV2_ARATH Reviewed; 352 AA. AC P82280; O23110; Q8LDM7; DT 21-AUG-2007, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-2000, sequence version 1. DT 07-JUN-2017, entry version 116. DE RecName: Full=AP2/ERF and B3 domain-containing transcription repressor RAV2; DE AltName: Full=Ethylene-responsive transcription factor RAV2; DE AltName: Full=Protein RELATED TO ABI3/VP1 2; DE AltName: Full=Protein RELATED TO APETALA2 8; DE AltName: Full=Protein TEMPRANILLO 2; GN Name=RAV2; Synonyms=RAP2-8, TEM2; OrderedLocusNames=At1g68840; GN ORFNames=F14K14.5, T6L1.3; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; TISSUE=Seedling; RX PubMed=9862967; DOI=10.1093/nar/27.2.470; RA Kagaya Y., Ohmiya K., Hattori T.; RT "RAV1, a novel DNA-binding protein, binds to bipartite recognition RT sequence through two distinct DNA-binding domains uniquely found in RT higher plants."; RL Nucleic Acids Res. 27:470-478(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., RA Feldmann K.A.; RT "Full-length cDNA from Arabidopsis thaliana."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] OF 19-352. RX PubMed=9192694; DOI=10.1073/pnas.94.13.7076; RA Okamuro J.K., Caster B., Villarroel R., Van Montagu M., Jofuku K.D.; RT "The AP2 domain of APETALA2 defines a large new family of DNA binding RT proteins in Arabidopsis."; RL Proc. Natl. Acad. Sci. U.S.A. 94:7076-7081(1997). RN [7] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=16407444; DOI=10.1104/pp.105.073783; RA Nakano T., Suzuki K., Fujimura T., Shinshi H.; RT "Genome-wide analysis of the ERF gene family in Arabidopsis and RT rice."; RL Plant Physiol. 140:411-432(2006). RN [8] RP FUNCTION. RX PubMed=18718758; DOI=10.1016/j.cub.2008.07.075; RA Castillejo C., Pelaz S.; RT "The balance between CONSTANS and TEMPRANILLO activities determines FT RT expression to trigger flowering."; RL Curr. Biol. 18:1338-1343(2008). RN [9] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to CC the GCC-box pathogenesis-related promoter element. May be involved CC in the regulation of gene expression by stress factors and by CC components of stress signal transduction pathways (By similarity). CC Transcriptional repressor of flowering time on long day plants. CC Acts directly on FT expression by binding 5'-CAACA-3' and 5'- CC CACCTG-3 sequences (Probable). Functionally redundant with TEM1. CC {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. CC RAV subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB013887; BAA34251.1; -; mRNA. DR EMBL; AC011665; AAG51586.1; -; Genomic_DNA. DR EMBL; AC011914; AAG52035.1; -; Genomic_DNA. DR EMBL; CP002684; AEE34847.1; -; Genomic_DNA. DR EMBL; CP002684; AEE34848.1; -; Genomic_DNA. DR EMBL; AF360312; AAK26022.1; -; mRNA. DR EMBL; AY056361; AAL07247.1; -; mRNA. DR EMBL; AY085908; AAM63120.1; -; mRNA. DR EMBL; AF003101; AAC49774.1; -; mRNA. DR PIR; T51330; T51330. DR RefSeq; NP_001185352.1; NM_001198423.1. DR RefSeq; NP_564947.1; NM_105558.3. DR UniGene; At.25344; -. DR ProteinModelPortal; P82280; -. DR SMR; P82280; -. DR BioGrid; 28437; 1. DR DIP; DIP-59694N; -. DR STRING; 3702.AT1G68840.1; -. DR iPTMnet; P82280; -. DR PaxDb; P82280; -. DR EnsemblPlants; AT1G68840.1; AT1G68840.1; AT1G68840. DR EnsemblPlants; AT1G68840.2; AT1G68840.2; AT1G68840. DR GeneID; 843216; -. DR Gramene; AT1G68840.1; AT1G68840.1; AT1G68840. DR Gramene; AT1G68840.2; AT1G68840.2; AT1G68840. DR KEGG; ath:AT1G68840; -. DR Araport; AT1G68840; -. DR TAIR; locus:2012438; AT1G68840. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR InParanoid; P82280; -. DR KO; K09287; -. DR OMA; RCSKKQA; -. DR OrthoDB; EOG09360IAF; -. DR PhylomeDB; P82280; -. DR PRO; PR:P82280; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; P82280; baseline and differential. DR Genevisible; P82280; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Activator; Complete proteome; DNA-binding; Ethylene signaling pathway; KW Nucleus; Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 352 AP2/ERF and B3 domain-containing FT transcription repressor RAV2. FT /FTId=PRO_0000297937. FT DNA_BIND 64 119 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 188 291 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 184 184 R -> C (in Ref. 6; AAC49774). FT {ECO:0000305}. FT CONFLICT 344 344 K -> N (in Ref. 5; AAM63120). FT {ECO:0000305}. SQ SEQUENCE 352 AA; 39493 MW; D130DA8DA99ACC75 CRC64; MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL // ID ARFG_ARATH Reviewed; 1164 AA. AC P93022; O24411; P93023; Q0WWZ8; Q5IRX8; Q8RXZ7; Q9LCZ5; Q9SBK4; AC Q9SYQ6; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 143. DE RecName: Full=Auxin response factor 7; DE AltName: Full=Auxin-responsive protein IAA21/IAA23/IAA25; DE AltName: Full=Protein BIPOSTO; DE AltName: Full=Protein NON-PHOTOTROPIC HYPOCOTYL 4; DE AltName: Full=Protein TRANSPORT INHIBITOR RESPONSE 5; GN Name=ARF7; Synonyms=BIP, IAA21, IAA23, IAA25, NPH4, TIR5; GN OrderedLocusNames=At5g20730; ORFNames=T1M15.130; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND TRANSCRIPTIONAL ACTIVATOR. RC STRAIN=cv. Columbia; RX PubMed=10318972; DOI=10.1073/pnas.96.10.5844; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Activation and repression of transcription by auxin-response RT factors."; RL Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [3] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). RC STRAIN=cv. Columbia; RA Hardtke C.S., Berleth T.; RT "A novel transcription factor, closely related to the Arabidopsis MP RT protein, interacts genetically with C-terminal domains of the MP RT product."; RL Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10810148; DOI=10.1105/tpc.12.5.757; RA Harper R.M., Stowe-Evans E.L., Luesse D.R., Muto H., Tatematsu K., RA Watahiki M.K., Yamamoto K.T., Liscum E.; RT "The NPH4 locus encodes the auxin response factor ARF7, a conditional RT regulator of differential growth in aerial Arabidopsis tissue."; RL Plant Cell 12:757-770(2000). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130714; DOI=10.1038/35048507; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., RA Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., RA Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., RA van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., RA Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., RA Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., RA Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., RA Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [6] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 120-1164 (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [8] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 551-966. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [9] RP NUCLEOTIDE SEQUENCE [MRNA] OF 560-1164 (ISOFORMS 1 AND 3). RC STRAIN=cv. Columbia; RX PubMed=9342315; DOI=10.1073/pnas.94.22.11786; RA Kim J., Harter K., Theologis A.; RT "Protein-protein interactions among the Aux/IAA proteins."; RL Proc. Natl. Acad. Sci. U.S.A. 94:11786-11791(1997). RN [10] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [11] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [12] RP INTERACTION WITH IAA19. RX PubMed=14729917; DOI=10.1105/tpc.018630; RA Tatematsu K., Kumagai S., Muto H., Sato A., Watahiki M.K., RA Harper R.M., Liscum E., Yamamoto K.T.; RT "MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions RT together with the transcriptional activator NPH4/ARF7 to regulate RT differential growth responses of hypocotyl and formation of lateral RT roots in Arabidopsis thaliana."; RL Plant Cell 16:379-393(2004). RN [13] RP FUNCTION, AND INTERACTION WITH IAA12. RX PubMed=14973283; DOI=10.1242/dev.00925; RA Hardtke C.S., Ckurshumova W., Vidaurre D.P., Singh S.A., Stamatiou G., RA Tiwari S.B., Hagen G., Guilfoyle T.J., Berleth T.; RT "Overlapping and non-redundant functions of the Arabidopsis auxin RT response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4."; RL Development 131:1089-1100(2004). RN [14] RP FUNCTION. RX PubMed=16461383; DOI=10.1104/pp.105.070987; RA Li J., Dai X., Zhao Y.; RT "A role for auxin response factor 19 in auxin and ethylene signaling RT in Arabidopsis."; RL Plant Physiol. 140:899-908(2006). RN [15] RP FUNCTION. RX PubMed=16371470; DOI=10.1073/pnas.0507127103; RA Esmon C.A., Tinsley A.G., Ljung K., Sandberg G., Hearne L.B., RA Liscum E.; RT "A gradient of auxin and auxin-dependent transcription precedes tropic RT growth responses."; RL Proc. Natl. Acad. Sci. U.S.A. 103:236-241(2006). RN [16] RP FUNCTION, SUBUNIT, AND INTERACTION WITH ARF5. RX PubMed=17259263; DOI=10.1105/tpc.106.047761; RA Okushima Y., Fukaki H., Onoda M., Theologis A., Tasaka M.; RT "ARF7 and ARF19 regulate lateral root formation via direct activation RT of LBD/ASL genes in Arabidopsis."; RL Plant Cell 19:118-130(2007). RN [17] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [18] RP INTERACTION. RX PubMed=21734647; DOI=10.1038/msb.2011.39; RA Vernoux T., Brunoud G., Farcot E., Morin V., Van den Daele H., RA Legrand J., Oliva M., Das P., Larrieu A., Wells D., Guedon Y., RA Armitage L., Picard F., Guyomarc'h S., Cellier C., Parry G., RA Koumproglou R., Doonan J.H., Estelle M., Godin C., Kepinski S., RA Bennett M., De Veylder L., Traas J.; RT "The auxin signalling network translates dynamic input into robust RT patterning at the shoot apex."; RL Mol. Syst. Biol. 7:508-508(2011). RN [19] RP X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 1036-1126, MUTAGENESIS OF RP LYS-1041; ASP-1091 AND ASP-1095, INTERACTION WITH IAA17, AND DOMAIN. RX PubMed=24706860; DOI=10.1073/pnas.1400074111; RA Korasick D.A., Westfall C.S., Lee S.G., Nanao M.H., Dumas R., RA Hagen G., Guilfoyle T.J., Jez J.M., Strader L.C.; RT "Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the RT control of auxin response repression."; RL Proc. Natl. Acad. Sci. U.S.A. 111:5427-5432(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Act as a CC transcriptional activator of several tropic stimulus-induced (TSI) CC genes, including SAUR50. Formation of heterodimers with Aux/IAA CC proteins may alter their ability to modulate early auxin response CC genes expression. Required for differential growth responses of CC aerial tissues. Involved in ethylene responses. Regulates lateral CC root formation through direct regulation of LBD16 and/or LBD29. CC Functionally redundant with ARF19. Mediates embryo axis formation CC and vascular tissues differentiation. Functionally redundant with CC ARF5. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, CC ECO:0000269|PubMed:16371470, ECO:0000269|PubMed:16461383, CC ECO:0000269|PubMed:17259263}. CC -!- SUBUNIT: Homodimers and heterodimers (PubMed:10476078, CC PubMed:21734647). Interacts with the auxin-responsive proteins CC IAA1 and IAA12 (BODENLOS)(PubMed:14973283, PubMed:21734647). CC Interacts (via PB1 domain) with IAA17 (via PB1 domain) CC (PubMed:24706860, PubMed:21734647). Interacts with IAA19 CC (PubMed:14729917, PubMed:21734647). Interacts with ARF5 CC (PubMed:17259263, PubMed:21734647). {ECO:0000269|PubMed:10476078, CC ECO:0000269|PubMed:14729917, ECO:0000269|PubMed:14973283, CC ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:21734647, CC ECO:0000269|PubMed:24706860}. CC -!- INTERACTION: CC Q9SN12:F3A4.140; NbExp=3; IntAct=EBI-632284, EBI-2324225; CC P49677:IAA1; NbExp=3; IntAct=EBI-632284, EBI-630505; CC O24409:IAA19; NbExp=3; IntAct=EBI-632284, EBI-632257; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; CC IsoId=P93022-1; Sequence=Displayed; CC Name=2; CC IsoId=P93022-2; Sequence=VSP_010090; CC Note=May be due to a competing donor splice site. No CC experimental confirmation available.; CC Name=3; CC IsoId=P93022-3; Sequence=VSP_010091; CC Note=Incomplete sequence. May be due to exon skipping. No CC experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078}. CC -!- DOMAIN: The PB1 domain provides both positive and negative CC electrostatic interfaces for directional protein interaction. CC {ECO:0000269|PubMed:24706860}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAB92474.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF042195; AAD02218.1; -; mRNA. DR EMBL; AY008392; AAG35177.1; -; Genomic_DNA. DR EMBL; AY669789; AAT67073.1; -; mRNA. DR EMBL; AF022368; AAD04807.1; -; mRNA. DR EMBL; AF186466; AAF71831.1; -; Genomic_DNA. DR EMBL; AF296832; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CP002688; AED92884.1; -; Genomic_DNA. DR EMBL; CP002688; AED92885.1; -; Genomic_DNA. DR EMBL; AY080595; AAL85006.1; -; mRNA. DR EMBL; U49077; AAB84358.1; -; mRNA. DR EMBL; U79555; AAB92474.1; ALT_FRAME; mRNA. DR EMBL; U79556; AAB92475.1; -; mRNA. DR EMBL; AK226185; BAE98350.1; -; mRNA. DR RefSeq; NP_851046.1; NM_180715.1. [P93022-2] DR RefSeq; NP_851047.1; NM_180716.3. [P93022-1] DR UniGene; At.10493; -. DR UniGene; At.49045; -. DR UniGene; At.59645; -. DR PDB; 4NJ6; X-ray; 2.40 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1036-1126. DR PDB; 4NJ7; X-ray; 3.00 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1036-1126. DR PDBsum; 4NJ6; -. DR PDBsum; 4NJ7; -. DR ProteinModelPortal; P93022; -. DR SMR; P93022; -. DR BioGrid; 17471; 35. DR DIP; DIP-34948N; -. DR IntAct; P93022; 24. DR STRING; 3702.AT5G20730.1; -. DR PaxDb; P93022; -. DR EnsemblPlants; AT5G20730.2; AT5G20730.2; AT5G20730. [P93022-1] DR GeneID; 832196; -. DR Gramene; AT5G20730.2; AT5G20730.2; AT5G20730. [P93022-1] DR KEGG; ath:AT5G20730; -. DR Araport; AT5G20730; -. DR TAIR; locus:2180469; AT5G20730. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR InParanoid; P93022; -. DR KO; K14486; -. DR OMA; CMEGDVQ; -. DR PRO; PR:P93022; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; P93022; baseline and differential. DR Genevisible; P93022; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009785; P:blue light signaling pathway; IMP:TAIR. DR GO; GO:0009630; P:gravitropism; TAS:TAIR. DR GO; GO:0048527; P:lateral root development; IGI:TAIR. DR GO; GO:0010311; P:lateral root formation; IGI:TAIR. DR GO; GO:0048366; P:leaf development; IGI:TAIR. DR GO; GO:0009638; P:phototropism; IMP:TAIR. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:TAIR. DR GO; GO:0009733; P:response to auxin; IMP:TAIR. DR GO; GO:0009723; P:response to ethylene; IGI:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW 3D-structure; Activator; Alternative splicing; KW Auxin signaling pathway; Complete proteome; Developmental protein; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 1164 Auxin response factor 7. FT /FTId=PRO_0000111511. FT DOMAIN 1037 1130 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 127 229 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 479 820 Gln-rich. FT VAR_SEQ 270 270 R -> RW (in isoform 2). FT {ECO:0000303|Ref.3}. FT /FTId=VSP_010090. FT VAR_SEQ 1144 1158 Missing (in isoform 3). FT {ECO:0000303|PubMed:9342315}. FT /FTId=VSP_010091. FT MUTAGEN 1041 1041 K->A: Loss of oligomerization. FT {ECO:0000269|PubMed:24706860}. FT MUTAGEN 1091 1091 D->A: Loss of oligomerization; when FT associated with A-1095. Loss of FT oligomerization; when associated with A- FT 1041 and A-1095. FT {ECO:0000269|PubMed:24706860}. FT MUTAGEN 1095 1095 D->A: Loss of oligomerization; when FT associated with A-1091. Loss of FT oligomerization; when associated with A- FT 1041 and A-1091. FT {ECO:0000269|PubMed:24706860}. FT CONFLICT 108 108 D -> N (in Ref. 3; AAD04807). FT {ECO:0000305}. FT CONFLICT 205 205 L -> F (in Ref. 3; AAD04807). FT {ECO:0000305}. FT CONFLICT 327 327 K -> E (in Ref. 3; AAD04807). FT {ECO:0000305}. FT CONFLICT 470 470 H -> D (in Ref. 3; AAD04807). FT {ECO:0000305}. FT CONFLICT 626 626 S -> A (in Ref. 1; AAD02218). FT {ECO:0000305}. FT CONFLICT 637 637 Q -> H (in Ref. 1; AAD02218). FT {ECO:0000305}. FT CONFLICT 800 800 N -> I (in Ref. 3; AAD04807). FT {ECO:0000305}. FT CONFLICT 839 853 Missing (in Ref. 9; AAB92475). FT {ECO:0000305}. FT CONFLICT 920 920 T -> N (in Ref. 9; AAB92475). FT {ECO:0000305}. FT CONFLICT 1038 1052 Missing (in Ref. 9; AAB92475). FT {ECO:0000305}. FT STRAND 1040 1044 {ECO:0000244|PDB:4NJ6}. FT STRAND 1049 1052 {ECO:0000244|PDB:4NJ6}. FT HELIX 1054 1056 {ECO:0000244|PDB:4NJ6}. FT STRAND 1057 1059 {ECO:0000244|PDB:4NJ6}. FT HELIX 1060 1070 {ECO:0000244|PDB:4NJ6}. FT TURN 1074 1078 {ECO:0000244|PDB:4NJ6}. FT TURN 1080 1082 {ECO:0000244|PDB:4NJ6}. FT STRAND 1084 1091 {ECO:0000244|PDB:4NJ6}. FT TURN 1092 1094 {ECO:0000244|PDB:4NJ6}. FT STRAND 1095 1098 {ECO:0000244|PDB:4NJ6}. FT HELIX 1104 1110 {ECO:0000244|PDB:4NJ6}. FT STRAND 1113 1117 {ECO:0000244|PDB:4NJ6}. FT HELIX 1119 1123 {ECO:0000244|PDB:4NJ6}. SQ SEQUENCE 1164 AA; 128886 MW; 6A2858510130F5B1 CRC64; MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR // ID ARFE_ARATH Reviewed; 902 AA. AC P93024; A5YYU1; A5YYU8; A5YYW1; A5YYW2; O64965; Q33DU8; Q9FXI3; DT 27-MAY-2002, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 3. DT 05-JUL-2017, entry version 147. DE RecName: Full=Auxin response factor 5; DE AltName: Full=Auxin-responsive protein IAA24; DE AltName: Full=Transcription factor MONOPTEROS; GN Name=ARF5; Synonyms=IAA24, MP; OrderedLocusNames=At1g19850; GN ORFNames=F6F9.10; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], AND VARIANT ILE-796. RC STRAIN=cv. Columbia; RX PubMed=9482737; DOI=10.1093/emboj/17.5.1405; RA Hardtke C.S., Berleth T.; RT "The Arabidopsis gene MONOPTEROS encodes a transcription factor RT mediating embryo axis formation and vascular development."; RL EMBO J. 17:1405-1411(1998). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NUCLEOTIDE SEQUENCE [MRNA] OF 1-75. RC STRAIN=cv. Columbia; RX PubMed=16227452; DOI=10.1105/tpc.105.036533; RA Nishimura T., Wada T., Yamamoto K.T., Okada K.; RT "The Arabidopsis STV1 protein, responsible for translation RT reinitiation, is required for auxin-mediated gynoecium patterning."; RL Plant Cell 17:2940-2953(2005). RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] OF 13-902. RC STRAIN=cv. Columbia; RX PubMed=9342315; DOI=10.1073/pnas.94.22.11786; RA Kim J., Harter K., Theologis A.; RT "Protein-protein interactions among the Aux/IAA proteins."; RL Proc. Natl. Acad. Sci. U.S.A. 94:11786-11791(1997). RN [7] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 422-690, AND VARIANTS PHE-439; RP THR-526 AND GLY-539--542-SER DEL. RC STRAIN=cv. Ag-0, cv. An-1, cv. Br-0, cv. C24, cv. Ct-1, cv. Cvi-1, RC cv. Edi-0, cv. Ga-0, cv. Kas-1, cv. Kin-0, cv. Landsberg erecta, RC cv. Ll-0, cv. Lz-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, RC cv. Se-0, cv. Sorbo, cv. Tsu-1, cv. Van-0, cv. Wa-1, and RC cv. Wassilewskija; RX PubMed=17435248; DOI=10.1534/genetics.107.071928; RA Ehrenreich I.M., Stafford P.A., Purugganan M.D.; RT "The genetic architecture of shoot branching in Arabidopsis thaliana: RT a comparative assessment of candidate gene associations vs. RT quantitative trait locus mapping."; RL Genetics 176:1223-1236(2007). RN [8] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [9] RP TRANSCRIPTIONAL ACTIVATOR. RX PubMed=10318972; DOI=10.1073/pnas.96.10.5844; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Activation and repression of transcription by auxin-response RT factors."; RL Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999). RN [10] RP INTERACTION WITH BODENLOS. RX PubMed=12101120; DOI=10.1101/gad.229402; RA Hamann T., Benkova E., Baeurle I., Kientz M., Juergens G.; RT "The Arabidopsis BODENLOS gene encodes an auxin response protein RT inhibiting MONOPTEROS-mediated embryo patterning."; RL Genes Dev. 16:1610-1615(2002). RN [11] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [12] RP FUNCTION, SUBUNIT, AND INTERACTION WITH ARF7. RX PubMed=14973283; DOI=10.1242/dev.00925; RA Hardtke C.S., Ckurshumova W., Vidaurre D.P., Singh S.A., Stamatiou G., RA Tiwari S.B., Hagen G., Guilfoyle T.J., Berleth T.; RT "Overlapping and non-redundant functions of the Arabidopsis auxin RT response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4."; RL Development 131:1089-1100(2004). RN [13] RP FUNCTION. RX PubMed=17553903; DOI=10.1242/dev.006759; RA Vidaurre D.P., Ploense S., Krogan N.T., Berleth T.; RT "AMP1 and MP antagonistically regulate embryo and meristem development RT in Arabidopsis."; RL Development 134:2561-2567(2007). RN [14] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [15] RP INTERACTION WITH BRX. RX PubMed=19465596; DOI=10.1242/dev.035444; RA Scacchi E., Osmont K.S., Beuchat J., Salinas P., Navarrete-Gomez M., RA Trigueros M., Ferrandiz C., Hardtke C.S.; RT "Dynamic, auxin-responsive plasma membrane-to-nucleus movement of RT Arabidopsis BRX."; RL Development 136:2059-2067(2009). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Seems to CC act as transcriptional activator. Formation of heterodimers with CC Aux/IAA proteins may alter their ability to modulate early auxin CC response genes expression. Mediates embryo axis formation and CC vascular tissues differentiation. Functionally redundant with CC ARF7. May be necessary to counteract AMP1 activity. CC {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, CC ECO:0000269|PubMed:17553903}. CC -!- SUBUNIT: Homodimers and heterodimers. Interacts with BRX and the CC auxin-responsive proteins IAA1, IAA12 (BODENLOS), IAA17 and ARF7. CC {ECO:0000269|PubMed:12101120, ECO:0000269|PubMed:14973283, CC ECO:0000269|PubMed:19465596}. CC -!- INTERACTION: CC Self; NbExp=5; IntAct=EBI-629519, EBI-629519; CC P49677:IAA1; NbExp=4; IntAct=EBI-629519, EBI-630505; CC Q38830:IAA12; NbExp=4; IntAct=EBI-629519, EBI-617608; CC Q38831:IAA13; NbExp=3; IntAct=EBI-629519, EBI-1554143; CC Q38832:IAA14; NbExp=3; IntAct=EBI-629519, EBI-2295562; CC O24409:IAA19; NbExp=4; IntAct=EBI-629519, EBI-632257; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- TISSUE SPECIFICITY: Expressed in the whole plant with a lower CC expression in leaves. Detected in embryo axis, provascular CC tissues, procambium and some differentiated vascular regions of CC mature organs. {ECO:0000269|PubMed:10476078}. CC -!- DEVELOPMENTAL STAGE: In early embryo and during organ development. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- MISCELLANEOUS: Absence of the protein probably causes early CC embryonic lethality. Premature stop codons are associated with CC vascular defects. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAG12546.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF037228; AAC39410.1; -; Genomic_DNA. DR EMBL; AF037229; AAC60794.1; -; mRNA. DR EMBL; AC007797; AAG12546.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE29906.1; -; Genomic_DNA. DR EMBL; AF334716; AAG50094.1; -; mRNA. DR EMBL; BT002050; AAN72061.1; -; mRNA. DR EMBL; BT008805; AAP68244.1; -; mRNA. DR EMBL; AB199792; BAE48152.1; -; mRNA. DR EMBL; U79557; AAB92476.1; -; mRNA. DR EMBL; EF598523; ABR09007.1; -; Genomic_DNA. DR EMBL; EF598524; ABR09008.1; -; Genomic_DNA. DR EMBL; EF598525; ABR09009.1; -; Genomic_DNA. DR EMBL; EF598526; ABR09010.1; -; Genomic_DNA. DR EMBL; EF598527; ABR09011.1; -; Genomic_DNA. DR EMBL; EF598528; ABR09012.1; -; Genomic_DNA. DR EMBL; EF598529; ABR09013.1; -; Genomic_DNA. DR EMBL; EF598530; ABR09014.1; -; Genomic_DNA. DR EMBL; EF598531; ABR09015.1; -; Genomic_DNA. DR EMBL; EF598532; ABR09016.1; -; Genomic_DNA. DR EMBL; EF598533; ABR09017.1; -; Genomic_DNA. DR EMBL; EF598534; ABR09018.1; -; Genomic_DNA. DR EMBL; EF598535; ABR09019.1; -; Genomic_DNA. DR EMBL; EF598536; ABR09020.1; -; Genomic_DNA. DR EMBL; EF598537; ABR09021.1; -; Genomic_DNA. DR EMBL; EF598538; ABR09022.1; -; Genomic_DNA. DR EMBL; EF598539; ABR09023.1; -; Genomic_DNA. DR EMBL; EF598540; ABR09024.1; -; Genomic_DNA. DR EMBL; EF598541; ABR09025.1; -; Genomic_DNA. DR EMBL; EF598542; ABR09026.1; -; Genomic_DNA. DR EMBL; EF598543; ABR09027.1; -; Genomic_DNA. DR EMBL; EF598544; ABR09028.1; -; Genomic_DNA. DR EMBL; EF598545; ABR09029.1; -; Genomic_DNA. DR EMBL; EF598546; ABR09030.1; -; Genomic_DNA. DR PIR; G86331; G86331. DR PIR; T51807; T51807. DR RefSeq; NP_173414.1; NM_101840.3. DR UniGene; At.10494; -. DR UniGene; At.41731; -. DR PDB; 4CHK; X-ray; 2.85 A; A/B/C/D/E/F/G/H=779-902. DR PDB; 4LDU; X-ray; 2.15 A; A=1-390. DR PDBsum; 4CHK; -. DR PDBsum; 4LDU; -. DR ProteinModelPortal; P93024; -. DR SMR; P93024; -. DR BioGrid; 23812; 35. DR IntAct; P93024; 35. DR STRING; 3702.AT1G19850.1; -. DR iPTMnet; P93024; -. DR PaxDb; P93024; -. DR EnsemblPlants; AT1G19850.1; AT1G19850.1; AT1G19850. DR GeneID; 838573; -. DR Gramene; AT1G19850.1; AT1G19850.1; AT1G19850. DR KEGG; ath:AT1G19850; -. DR Araport; AT1G19850; -. DR TAIR; locus:2035454; AT1G19850. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; P93024; -. DR KO; K14486; -. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR PhylomeDB; P93024; -. DR PRO; PR:P93024; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; P93024; baseline and differential. DR Genevisible; P93024; AT. DR GO; GO:0016020; C:membrane; IDA:TAIR. DR GO; GO:0005634; C:nucleus; ISS:TAIR. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IDA:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IGI:TAIR. DR GO; GO:0009908; P:flower development; IGI:TAIR. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IGI:TAIR. DR GO; GO:0009942; P:longitudinal axis specification; IMP:TAIR. DR GO; GO:0048507; P:meristem development; IGI:TAIR. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEP:TAIR. DR GO; GO:0009733; P:response to auxin; IEP:TAIR. DR GO; GO:0048364; P:root development; IGI:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0010051; P:xylem and phloem pattern formation; IMP:TAIR. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW 3D-structure; Activator; Auxin signaling pathway; Complete proteome; KW Developmental protein; DNA-binding; Nucleus; Polymorphism; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 902 Auxin response factor 5. FT /FTId=PRO_0000111509. FT DOMAIN 793 877 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 158 260 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 23 28 Poly-Thr. FT COMPBIAS 282 289 Poly-Ala. FT COMPBIAS 445 499 Met-rich. FT COMPBIAS 471 675 Gln-rich. FT VARIANT 439 439 Y -> F (in strain; cv. Ag-0). FT {ECO:0000269|PubMed:17435248}. FT VARIANT 526 526 M -> T (in strain: cv. Cvi-1). FT {ECO:0000269|PubMed:17435248}. FT VARIANT 539 542 Missing (in strain: cv. Kas-1). FT VARIANT 796 796 T -> I. {ECO:0000269|PubMed:9482737}. FT HELIX 53 60 {ECO:0000244|PDB:4LDU}. FT STRAND 72 75 {ECO:0000244|PDB:4LDU}. FT HELIX 77 88 {ECO:0000244|PDB:4LDU}. FT STRAND 104 117 {ECO:0000244|PDB:4LDU}. FT TURN 119 121 {ECO:0000244|PDB:4LDU}. FT STRAND 124 132 {ECO:0000244|PDB:4LDU}. FT HELIX 136 138 {ECO:0000244|PDB:4LDU}. FT HELIX 142 145 {ECO:0000244|PDB:4LDU}. FT STRAND 155 161 {ECO:0000244|PDB:4LDU}. FT TURN 165 167 {ECO:0000244|PDB:4LDU}. FT TURN 169 171 {ECO:0000244|PDB:4LDU}. FT STRAND 173 175 {ECO:0000244|PDB:4LDU}. FT HELIX 177 183 {ECO:0000244|PDB:4LDU}. FT STRAND 191 193 {ECO:0000244|PDB:4LDU}. FT STRAND 195 201 {ECO:0000244|PDB:4LDU}. FT STRAND 207 215 {ECO:0000244|PDB:4LDU}. FT TURN 216 219 {ECO:0000244|PDB:4LDU}. FT STRAND 220 223 {ECO:0000244|PDB:4LDU}. FT HELIX 227 234 {ECO:0000244|PDB:4LDU}. FT STRAND 241 246 {ECO:0000244|PDB:4LDU}. FT STRAND 252 257 {ECO:0000244|PDB:4LDU}. FT STRAND 269 271 {ECO:0000244|PDB:4LDU}. FT HELIX 273 290 {ECO:0000244|PDB:4LDU}. FT STRAND 294 298 {ECO:0000244|PDB:4LDU}. FT TURN 300 302 {ECO:0000244|PDB:4LDU}. FT STRAND 308 310 {ECO:0000244|PDB:4LDU}. FT HELIX 311 317 {ECO:0000244|PDB:4LDU}. FT TURN 318 320 {ECO:0000244|PDB:4LDU}. FT STRAND 328 334 {ECO:0000244|PDB:4LDU}. FT STRAND 340 350 {ECO:0000244|PDB:4LDU}. FT TURN 355 357 {ECO:0000244|PDB:4LDU}. FT STRAND 366 371 {ECO:0000244|PDB:4LDU}. FT TURN 374 376 {ECO:0000244|PDB:4LDU}. FT STRAND 380 382 {ECO:0000244|PDB:4LDU}. FT HELIX 384 386 {ECO:0000244|PDB:4LDU}. FT STRAND 795 800 {ECO:0000244|PDB:4CHK}. FT STRAND 805 808 {ECO:0000244|PDB:4CHK}. FT HELIX 810 812 {ECO:0000244|PDB:4CHK}. FT HELIX 816 827 {ECO:0000244|PDB:4CHK}. FT TURN 830 832 {ECO:0000244|PDB:4CHK}. FT TURN 836 838 {ECO:0000244|PDB:4CHK}. FT STRAND 842 847 {ECO:0000244|PDB:4CHK}. FT STRAND 852 854 {ECO:0000244|PDB:4CHK}. FT HELIX 860 866 {ECO:0000244|PDB:4CHK}. FT STRAND 867 873 {ECO:0000244|PDB:4CHK}. FT HELIX 875 889 {ECO:0000244|PDB:4CHK}. SQ SEQUENCE 902 AA; 99650 MW; D20D348369757F09 CRC64; MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS VS // ID ABI3_ARATH Reviewed; 720 AA. AC Q01593; A6N2M3; A6N2N0; A6N2P3; O23625; Q1EQV9; Q56ZT2; Q570G9; DT 01-OCT-1994, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-1994, sequence version 1. DT 05-JUL-2017, entry version 133. DE RecName: Full=B3 domain-containing transcription factor ABI3; DE AltName: Full=Protein ABSCISIC ACID-INSENSITIVE 3; GN Name=ABI3; OrderedLocusNames=At3g24650; ORFNames=MSD24.2; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA]. RC STRAIN=cv. Columbia; TISSUE=Fruit; RX PubMed=1359917; DOI=10.1105/tpc.4.10.1251; RA Giraudat J., Hauge B.M., Valon C., Smalle J., Parcy F., Goodman H.M.; RT "Isolation of the Arabidopsis ABI3 gene by positional cloning."; RL Plant Cell 4:1251-1261(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10907853; DOI=10.1093/dnares/7.3.217; RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. RT Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC RT and BAC clones."; RL DNA Res. 7:217-221(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 2-719. RC STRAIN=cv. Wassilewskija; RX PubMed=16816409; DOI=10.1093/pcp/pcj078; RA Tamura N., Yoshida T., Tanaka A., Sasaki R., Bando A., Toh S., RA Lepiniec L., Kawakami N.; RT "Isolation and characterization of high temperature-resistant RT germination mutants of Arabidopsis thaliana."; RL Plant Cell Physiol. 47:1081-1094(2006). RN [6] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 48-302, AND VARIANTS LEU-225; RP GLU-231 AND THR-248. RC STRAIN=cv. An-1, cv. Br-0, cv. Ct-1, cv. Cvi-1, cv. Edi-0, cv. Ga-0, RC cv. Kas-1, cv. Kin-0, cv. Landsberg erecta, cv. Ll-0, cv. Lz-0, RC cv. Ms-0, cv. Mt-0, cv. Nok-3, cv. Oy-0, cv. Se-0, cv. Sorbo, RC cv. Tsu-1, cv. Van-0, cv. Wa-1, and cv. Wassilewskija; RX PubMed=17435248; DOI=10.1534/genetics.107.071928; RA Ehrenreich I.M., Stafford P.A., Purugganan M.D.; RT "The genetic architecture of shoot branching in Arabidopsis thaliana: RT a comparative assessment of candidate gene associations vs. RT quantitative trait locus mapping."; RL Genetics 176:1223-1236(2007). RN [7] RP INTERACTION WITH APRR1; AIP2; AIP3 AND AIP4. RX PubMed=10743655; DOI=10.1046/j.1365-313x.2000.00663.x; RA Kurup S., Jones H.D., Holdsworth M.J.; RT "Interactions of the developmental regulator ABI3 with proteins RT identified from developing Arabidopsis seeds."; RL Plant J. 21:143-155(2000). RN [8] RP INTERACTION WITH ABI5. RX PubMed=11489176; DOI=10.1046/j.1365-313x.2001.01069.x; RA Nakamura S., Lynch T.J., Finkelstein R.R.; RT "Physical interactions between ABA response loci of Arabidopsis."; RL Plant J. 26:627-635(2001). RN [9] RP INTERACTION WITH BZIP10 AND BZIP25, AND DEVELOPMENTAL STAGE. RC STRAIN=cv. Columbia; RX PubMed=12657652; DOI=10.1074/jbc.M210538200; RA Lara P., Onate-Sanchez L., Abraham Z., Ferrandiz C., Diaz I., RA Carbonero P., Vicente-Carbajosa J.; RT "Synergistic activation of seed storage protein gene expression in RT Arabidopsis by ABI3 and two bZIPs related to OPAQUE2."; RL J. Biol. Chem. 278:21003-21011(2003). RN [10] RP INTERACTION WITH AIP2, SUBCELLULAR LOCATION, AND UBIQUITINATION. RX PubMed=15998807; DOI=10.1101/gad.1318705; RA Zhang X., Garreton V., Chua N.H.; RT "The AIP2 E3 ligase acts as a novel negative regulator of ABA RT signaling by promoting ABI3 degradation."; RL Genes Dev. 19:1532-1543(2005). RN [11] RP INTERACTION WITH SPK1 AND SCAR3. RX PubMed=17267444; DOI=10.1242/dev.02792; RA Uhrig J.F., Mutondo M., Zimmermann I., Deeks M.J., Machesky L.M., RA Thomas P., Uhrig S., Rambke C., Hussey P.J., Huelskamp M.; RT "The role of Arabidopsis SCAR genes in ARP2-ARP3-dependent cell RT morphogenesis."; RL Development 134:967-977(2007). RN [12] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [13] RP FUNCTION, AND INTERACTION WITH BZIP10; BZIP25 AND BZIP53. RX PubMed=19531597; DOI=10.1105/tpc.108.062968; RA Alonso R., Onate-Sanchez L., Weltmeier F., Ehlert A., Diaz I., RA Dietrich K., Vicente-Carbajosa J., Droege-Laser W.; RT "A pivotal role of the basic leucine zipper transcription factor RT bZIP53 in the regulation of Arabidopsis seed maturation gene RT expression based on heterodimerization and protein complex RT formation."; RL Plant Cell 21:1747-1761(2009). RN [14] RP ALTERNATIVE SPLICING, AND TISSUE SPECIFICITY. RX PubMed=20525852; DOI=10.1105/tpc.110.074674; RA Sugliani M., Brambilla V., Clerkx E.J., Koornneef M., Soppe W.J.; RT "The conserved splicing factor SUA controls alternative splicing of RT the developmental regulator ABI3 in Arabidopsis."; RL Plant Cell 22:1936-1946(2010). RN [15] RP INDUCTION BY EMF1 AND EMF2. RX PubMed=19783648; DOI=10.1104/pp.109.143495; RA Kim S.Y., Zhu T., Sung Z.R.; RT "Epigenetic regulation of gene programs by EMF1 and EMF2 in RT Arabidopsis."; RL Plant Physiol. 152:516-528(2010). RN [16] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=24043799; DOI=10.1073/pnas.1308114110; RA Delmas F., Sankaranarayanan S., Deb S., Widdup E., Bournonville C., RA Bollier N., Northey J.G., McCourt P., Samuel M.A.; RT "ABI3 controls embryo degreening through Mendel's I locus."; RL Proc. Natl. Acad. Sci. U.S.A. 110:E3888-E3894(2013). CC -!- FUNCTION: Participates in abscisic acid-regulated gene expression CC during seed development. Regulates the transcription of SGR1 and CC SGR2 that are involved in leaf and embryo degreening. CC {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. CC -!- SUBUNIT: Interacts (via C-terminus) with SPK1, SCAR3, ABI5, APRR1, CC AIP2, AIP3 and AIP4. Binds to BZIP10 and BZIP25 and forms CC complexes made of ABI3, BZIP53 and BZIP25 or BZIP10. CC {ECO:0000269|PubMed:10743655, ECO:0000269|PubMed:11489176, CC ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:15998807, CC ECO:0000269|PubMed:17267444, ECO:0000269|PubMed:19531597}. CC -!- INTERACTION: CC Q8RXD3:AIP2; NbExp=3; IntAct=EBI-1578892, EBI-2312425; CC Q9M4B5:AIP3; NbExp=2; IntAct=EBI-1578892, EBI-2130809; CC -!- SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Predominantly found CC in the nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Comment=A number of isoforms are produced. Splicing is regulated CC by SUA. {ECO:0000269|PubMed:20525852}; CC Name=1; Synonyms=ABI3-alpha; CC IsoId=Q01593-1; Sequence=Displayed; CC Name=2; Synonyms=ABI3-beta; CC IsoId=Q01593-2; Sequence=VSP_058192, VSP_058193; CC Note=Due to a cryptic intron removal. CC {ECO:0000269|PubMed:20525852}; CC -!- TISSUE SPECIFICITY: Isoform 2 accumulates only at the end of seed CC maturation. {ECO:0000269|PubMed:20525852}. CC -!- DEVELOPMENTAL STAGE: Expressed in the embryos, endosperm, and CC outer teguments of the seed throughout seed development. CC {ECO:0000269|PubMed:12657652}. CC -!- INDUCTION: Repressed by silencing mediated by polycomb group (PcG) CC protein complex containing EMF1 and EMF2. CC {ECO:0000269|PubMed:19783648}. CC -!- PTM: Ubiquitinated by AIP2. Ubiquitination probably leads to its CC subsequent degradation, thus negatively regulating ABA signaling. CC {ECO:0000269|PubMed:15998807}. CC -!- MISCELLANEOUS: The truncated abi3-6 mutant lacking the DNA-binding CC domain is unable to localize to the nucleus and is an embryo stay- CC green mutant. {ECO:0000305|PubMed:24043799}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB01214.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; X68141; CAA48241.1; -; mRNA. DR EMBL; AJ002473; CAA05484.1; -; Genomic_DNA. DR EMBL; AP000740; BAB01214.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE76933.1; -; Genomic_DNA. DR EMBL; AK220739; BAD93896.1; -; mRNA. DR EMBL; AK220879; BAD94272.1; -; mRNA. DR EMBL; AB253328; BAE96106.1; -; Genomic_DNA. DR EMBL; EF597723; ABR21503.1; -; Genomic_DNA. DR EMBL; EF597724; ABR21504.1; -; Genomic_DNA. DR EMBL; EF597725; ABR21505.1; -; Genomic_DNA. DR EMBL; EF597726; ABR21506.1; -; Genomic_DNA. DR EMBL; EF597727; ABR21507.1; -; Genomic_DNA. DR EMBL; EF597728; ABR21508.1; -; Genomic_DNA. DR EMBL; EF597729; ABR21509.1; -; Genomic_DNA. DR EMBL; EF597730; ABR21510.1; -; Genomic_DNA. DR EMBL; EF597731; ABR21511.1; -; Genomic_DNA. DR EMBL; EF597732; ABR21512.1; -; Genomic_DNA. DR EMBL; EF597733; ABR21513.1; -; Genomic_DNA. DR EMBL; EF597734; ABR21514.1; -; Genomic_DNA. DR EMBL; EF597735; ABR21515.1; -; Genomic_DNA. DR EMBL; EF597736; ABR21516.1; -; Genomic_DNA. DR EMBL; EF597737; ABR21517.1; -; Genomic_DNA. DR EMBL; EF597738; ABR21518.1; -; Genomic_DNA. DR EMBL; EF597739; ABR21519.1; -; Genomic_DNA. DR EMBL; EF597740; ABR21520.1; -; Genomic_DNA. DR EMBL; EF597741; ABR21521.1; -; Genomic_DNA. DR EMBL; EF597743; ABR21523.1; -; Genomic_DNA. DR EMBL; EF597744; ABR21524.1; -; Genomic_DNA. DR PIR; JQ1676; JQ1676. DR RefSeq; NP_189108.1; NM_113376.4. [Q01593-1] DR UniGene; At.19959; -. DR ProteinModelPortal; Q01593; -. DR SMR; Q01593; -. DR BioGrid; 7392; 18. DR IntAct; Q01593; 8. DR STRING; 3702.AT3G24650.1; -. DR PaxDb; Q01593; -. DR EnsemblPlants; AT3G24650.1; AT3G24650.1; AT3G24650. [Q01593-1] DR GeneID; 822061; -. DR Gramene; AT3G24650.1; AT3G24650.1; AT3G24650. [Q01593-1] DR KEGG; ath:AT3G24650; -. DR Araport; AT3G24650; -. DR TAIR; locus:2093166; AT3G24650. DR eggNOG; ENOG410IJ7Z; Eukaryota. DR eggNOG; ENOG4111P6C; LUCA. DR InParanoid; Q01593; -. DR OMA; EIWLDDH; -. DR OrthoDB; EOG0936067A; -. DR PhylomeDB; Q01593; -. DR PRO; PR:Q01593; -. DR Proteomes; UP000006548; Chromosome 3. DR Genevisible; Q01593; AT. DR GO; GO:0005829; C:cytosol; IDA:UniProtKB. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0003677; F:DNA binding; IDA:TAIR. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEP:TAIR. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IDA:TAIR. DR GO; GO:0009657; P:plastid organization; IMP:TAIR. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR. DR GO; GO:0009737; P:response to abscisic acid; IMP:TAIR. DR GO; GO:0009733; P:response to auxin; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW Abscisic acid signaling pathway; Activator; Alternative splicing; KW Complete proteome; Cytoplasm; Developmental protein; DNA-binding; KW Nucleus; Reference proteome; Transcription; Transcription regulation; KW Ubl conjugation. FT CHAIN 1 720 B3 domain-containing transcription factor FT ABI3. FT /FTId=PRO_0000111504. FT DNA_BIND 572 674 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 415 429 YNQFGDPTGFNGYNM -> TNERSEITPFVFLSN (in FT isoform 2). FT {ECO:0000269|PubMed:20525852}. FT /FTId=VSP_058192. FT VAR_SEQ 430 720 Missing (in isoform 2). FT {ECO:0000269|PubMed:20525852}. FT /FTId=VSP_058193. FT VARIANT 225 225 M -> L (in strain: cv. An-1, cv. Br-0, FT cv. Ct-1, cv. Cvi-1, cv. Edi-0, cv. Ga-0, FT cv. Kas-1, cv. Kin-0, cv. Landsberg FT erecta, cv. Ll-0, cv. Lz-0, cv. Ms-0, cv. FT Mt-0, cv. Nok-3, cv. Oy-0, cv. Se-0, cv. FT Sorbo, cv. Tsu-1, cv. Van-0, cv. Wa-1 and FT cv. Wassilewskija). FT {ECO:0000269|PubMed:17435248}. FT VARIANT 231 231 G -> E (in strain: cv. Kas-1 and cv. FT Sorbo). {ECO:0000269|PubMed:17435248}. FT VARIANT 248 248 A -> T (in strain: cv. Cvi-1). FT {ECO:0000269|PubMed:17435248}. FT CONFLICT 100 100 S -> P (in Ref. 4; BAD93896/BAD94272). FT {ECO:0000305}. FT CONFLICT 344 344 D -> V (in Ref. 4; BAD94272). FT {ECO:0000305}. FT CONFLICT 486 486 Missing (in Ref. 1; CAA05484). FT {ECO:0000305}. FT CONFLICT 556 556 P -> L (in Ref. 5; BAE96106). FT {ECO:0000305}. SQ SEQUENCE 720 AA; 79500 MW; D6A0F740D733060F CRC64; MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI NNNSPSANVV VASPTSQTVK // ID ARFJ_ORYSI Reviewed; 699 AA. AC Q01I35; A2XVL0; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-SEP-2007, sequence version 2. DT 05-JUL-2017, entry version 61. DE RecName: Full=Auxin response factor 10; GN Name=ARF10; ORFNames=OsI_016103, OSIGBa0145G11.4; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Guang-Lu-Ai No.4; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [3] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAH67605.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CR855217; CAH67605.1; ALT_INIT; Genomic_DNA. DR EMBL; CM000129; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR ProteinModelPortal; Q01I35; -. DR SMR; Q01I35; -. DR EnsemblPlants; BGIOSGA016767-TA; BGIOSGA016767-PA; BGIOSGA016767. DR Gramene; BGIOSGA016767-TA; BGIOSGA016767-PA; BGIOSGA016767. DR eggNOG; ENOG410JQUD; Eukaryota. DR eggNOG; ENOG410XYC6; LUCA. DR HOGENOM; HOG000241141; -. DR OMA; DEPFCAF; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 699 Auxin response factor 10. FT /FTId=PRO_0000299264. FT DOMAIN 613 693 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 125 227 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 431 437 Poly-His. SQ SEQUENCE 699 AA; 75737 MW; 937A7D491A14D9A5 CRC64; MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL SSIPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRNPPYA ELPLEGQIFT GPVFPPNPMA HDHHHHHGFP FLPFPDSSAQ PAGIQGARHA QFASPFPEFH IGNLQPNLML YAGIRLPPAD RAAPAPRPPR IIISTDLTIG SPGKPDDAAC SPSSGGKKID DTKPRGFLLF GQAILTEEQI KNGNSDGRPA SPNWDAEKAP NTSEGSDSGV TQGSPTKNTT PSWSLPYFGG NNISRASEYE LNPGQCKVFV ESETVGRSLD LSALSSFEEL YACLSDMFSI GSDELRSHLV YRSPAGEVKH AGDEPFCAFV KSARKLRILT DAGSDNLGD // ID ARFK_ORYSI Reviewed; 955 AA. AC Q01K26; A2XYM8; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-SEP-2007, sequence version 2. DT 05-JUL-2017, entry version 63. DE RecName: Full=Auxin response factor 11; DE AltName: Full=OsARF5; DE AltName: Full=OsMP; DE AltName: Full=Protein MONOPTEROS-like; GN Name=ARF11; Synonyms=ARF5, MP; ORFNames=OsI_017171, OSIGBa0099L20.10; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Guang-Lu-Ai No.4; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [3] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAH66895.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=EAY95938.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CR855152; CAH66895.1; ALT_SEQ; Genomic_DNA. DR EMBL; CM000129; EAY95938.1; ALT_SEQ; Genomic_DNA. DR ProteinModelPortal; Q01K26; -. DR SMR; Q01K26; -. DR STRING; 39946.BGIOSGA014158-PA; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR HOGENOM; HOG000241141; -. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 955 Auxin response factor 11. FT /FTId=PRO_0000299266. FT DOMAIN 852 936 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 143 245 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105224 MW; A8436A93FAC13A2A CRC64; MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRATRQQTM LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVIPVARYN KATYMQPSVG MRFAMMFETE ESSKRRYTGT VVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVSVP GMEIGSANMS SFPRAQGNPY GSLQHIPAVG SELAIMLLNQ SGQTLGSPLS FHQSSYSSII QNVKQNYIPP LTVSTSACLT KQESLPSDDA QHQFHMANMQ NGDLEGSEVQ PVIDSISESK LNATSRDPRN TDSYTSRSTS EQNSKGEPRG KTRRSKKGLP HKTVSEKSDL SSAPSWICDN QQVGLESKLV GCDEQVNCGN IEDSSGALTQ GNFVGQPHGH QVEQKGVLSP PKVESSKSPD GGKSVNSFPN QGCFSQFIDG LDWMTQPSYY QDSNVIQPAG VSENIFSSSA DIPPSMIADT METFQASCLS DCLPNSIQEF ISSPDLNSLT FLSPDMQNLE VQLQHDGSNL PSTSNSFVQM SFSEESASQS ANLSGLHMES THRSINTTSC SQPMSTGGFD AGMYSKLPRL KESQILSLPE IHTNSMGTSA CSMDATEYSL DRSAKPMKPP VRTYTKVQKQ GSVGRSIDVT GFRNYHELRS AIACMFGLQG KLEHPGSSEW KLVYVDYEND VLLVGDDPWE EFINCVRCIR ILSPSEVQQM SENGMHVLND CIQAA // ID Y7633_ORYSJ Reviewed; 955 AA. AC Q0D5G4; A0A0P0X7R8; Q8H349; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 2. DT 10-MAY-2017, entry version 77. DE RecName: Full=B3 domain-containing protein Os07g0563300; GN OrderedLocusNames=Os07g0563300, LOC_Os07g37610; GN ORFNames=OJ1720_F04.105; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAC20873.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAF21909.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005296; BAC20873.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP008213; BAF21909.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014963; BAT02153.1; -; Genomic_DNA. DR RefSeq; XP_015647112.1; XM_015791626.1. DR UniGene; Os.46019; -. DR SMR; Q0D5G4; -. DR STRING; 39947.LOC_Os07g37610.1; -. DR PaxDb; Q0D5G4; -. DR GeneID; 4343608; -. DR KEGG; osa:4343608; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; Q0D5G4; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000059680; Chromosome 7. DR ExpressionAtlas; Q0D5G4; baseline and differential. DR Genevisible; Q0D5G4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013087; Znf_C2H2_type. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Metal-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation; Zinc; KW Zinc-finger. FT CHAIN 1 955 B3 domain-containing protein FT Os07g0563300. FT /FTId=PRO_0000376975. FT DNA_BIND 453 554 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 708 758 CW-type. {ECO:0000255|PROSITE- FT ProRule:PRU00454}. FT COMPBIAS 4 80 Pro-rich. FT COMPBIAS 382 386 Poly-Gln. SQ SEQUENCE 955 AA; 105720 MW; 972BA396191D7803 CRC64; MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT PQHQQQQQGP PGHAPPQQRP RICFNAHCKD PKSDGPRRRG WRLRNGDFAE LCDRCYHSFE HGGFCETFHL EVAGWRNCES CGKRLHCGCI VSVHAFVHLD AGGVECVMCA RKSHAAMAPS QIWSSSMHMA QNVADRKDNF VKSWRPPAGQ FSSQWRQNNM WSMSTMQSDL QQRLAFEFDR PSGSEKLLPG RTFIHAHEKK FDDMHDRSTT PAGMNQIMRE RYANGHTQHT TLDPTYAYTL YHREGTNPNL HDHSHHAGEN DHLTARKGVT SDPCSSVSTT FKLDSHHPSI LKDDPSAVPA GLSSNFSSAN GPKDHIRIGP TQQQQQMASS SLQKQFYSHS VIDNDFQAQL RNGRPRMDAK ARSQLLPRYW PRITDQELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP AISQAEGLPL KVQDATGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKATNLSAEQ DQPTKPANGV LPPPEANNKV VVPDSSPNAA VPRPIKVNTE SKSSSPVEQA TACKIDKGAL PQKEGPGTSS SSPLPVKRKA TSVGPKIKRF HMDSEESMEL KITWEEAQEL LRPPPKAPSI VVVDGHEFEE YEEPPILGRR TYFVTDQSGE NHQWAQCEDC SKWRKLPVDA LLPSKWTCSD NKWDSERSSC DSAQEINMEE LGEMIPIKPG AAKKTKGKVD TDNIDVSDGL DTLANLAILG EGESLPSQPT TRHPRHRPGC SCIVCIQPPS GKGPKHKQTC TCNVCMTVRR RFRTLMMRRE KRQQSEKDSG VPRKREPGQS SEPVPQSGSG AHPTSTSSPH QRADTNGEGP EDMSIDNKRT SSPVKNQIDL NSQPEREDEQ SPKSDATRLL RDNPT // ID ARFS_ORYSJ Reviewed; 1161 AA. AC Q0D9R7; Q5Z826; Q8S979; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-SEP-2007, sequence version 2. DT 05-JUL-2017, entry version 72. DE RecName: Full=Auxin response factor 19; DE AltName: Full=OsARF7a; GN Name=ARF19; Synonyms=ARF7A; GN OrderedLocusNames=Os06g0702600, LOC_Os06g48950; GN ORFNames=OJ1215_E11.1, P0596H10.43; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [5] RP NUCLEOTIDE SEQUENCE [MRNA] OF 39-1161 (ISOFORM 1). RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q0D9R7-1; Sequence=Displayed; CC Note=No experimental confirmation available.; CC Name=2; CC IsoId=Q0D9R7-2; Sequence=VSP_039448; CC Note=No experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003726; BAD53792.1; -; Genomic_DNA. DR EMBL; AP004324; BAD54030.1; -; Genomic_DNA. DR EMBL; AP008212; BAF20406.2; -; Genomic_DNA. DR EMBL; AP014962; BAS99363.1; -; Genomic_DNA. DR EMBL; AK103312; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AB071296; BAB85916.1; -; mRNA. DR RefSeq; XP_015643493.1; XM_015788007.1. [Q0D9R7-1] DR UniGene; Os.22271; -. DR ProteinModelPortal; Q0D9R7; -. DR SMR; Q0D9R7; -. DR STRING; 39947.LOC_Os06g48950.1; -. DR PaxDb; Q0D9R7; -. DR GeneID; 4341978; -. DR KEGG; osa:4341978; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q0D9R7; -. DR Proteomes; UP000059680; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 1161 Auxin response factor 19. FT /FTId=PRO_0000299278. FT DOMAIN 1027 1111 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 154 256 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 488 742 Gln-rich. FT VAR_SEQ 721 890 Missing (in isoform 2). FT {ECO:0000303|PubMed:12869764}. FT /FTId=VSP_039448. FT CONFLICT 241 241 V -> I (in Ref. 4; AK103312). FT {ECO:0000305}. SQ SEQUENCE 1161 AA; 128283 MW; DEF1C16AB919CF41 CRC64; MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLSQQQ MMPQQSTKVP SQNTPLPLPV QQEPQQKLLQ KQAMLADTSE AAVPPTTSVN VISTTGSPLM TTGATHSVLT EEIPSCSTSP STANGNHLLQ PILGRNKHCS MINTEKVPQS AAPMSVPSSL EAVTATPRMM KDSPKLNHNV KQSVVASKLA NAGTGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHQN FPMSNFNQPQ MFKDAPPDAE IHAANTSNNA LFGINGDGPL GFPIGLGTDD FLSNGIDAAK YENHISTEID NSYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSTINDGG FLNRSSWPPA APLKRMRTFT KVYKRGAVGR SIDMSQFSGY DELKHALARM FSIEGQLEER QRIGWKLVYK DHEDDILLLG DDPWEEFVGC VKCIRILSPQ EVQQMSLEGC DLGNNIPPNQ ACSSSDGGNA WRARCDQNSG NPSNGSYEQF E // ID ARFN_ORYSJ Reviewed; 687 AA. AC Q0DGS1; Q68Y40; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-SEP-2007, sequence version 2. DT 05-JUL-2017, entry version 66. DE RecName: Full=Auxin response factor 14; GN Name=ARF14; OrderedLocusNames=Os05g0515400, LOC_Os05g43920; GN ORFNames=P0022D06.14; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y; RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., RA Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.; RT "A fine physical map of the rice chromosome 5."; RL Mol. Genet. Genomics 274:337-345(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- INDUCTION: Down-regulated by auxin under light condition. CC {ECO:0000269|PubMed:17408882}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAU03112.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAF17952.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC132485; AAU03112.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP008211; BAF17952.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014961; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; XP_015637659.1; XM_015782173.1. DR UniGene; Os.50772; -. DR ProteinModelPortal; Q0DGS1; -. DR SMR; Q0DGS1; -. DR STRING; 39947.LOC_Os05g43920.1; -. DR PaxDb; Q0DGS1; -. DR PRIDE; Q0DGS1; -. DR GeneID; 4339313; -. DR KEGG; osa:4339313; -. DR eggNOG; ENOG410JSIU; Eukaryota. DR eggNOG; ENOG41108RS; LUCA. DR InParanoid; Q0DGS1; -. DR OrthoDB; EOG093604LS; -. DR Proteomes; UP000059680; Chromosome 5. DR Genevisible; Q0DGS1; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 687 Auxin response factor 14. FT /FTId=PRO_0000299271. FT DNA_BIND 133 235 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 687 AA; 74097 MW; 8B146A24A11BFDC7 CRC64; MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AADGGGGEVP PAGAAAVPPH VACRVVGVEL RADAATDEVY ARLALVAEGE MLQRNFREGG GEDGAGEMEG CDAEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKTVRPS QELIAVDLHG TQWKFRHIYR GQPRRHLLTI GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG VRRAVQLRNE ALFEPVNSSD SKLRILSSVA SSLENKSVFH ICFNPRSGAS EFIVPYWRLL KSLNHPFSIG MRFRVCYESE DANERSAGLI SGISEVDPIR WPGSRWKCLL VRWDDSTDSS HQNRVSPWEI ERVGGSVSVT HSLSSGSKRT KLHFPQGSLD TPFLNGNGHP DSMGTENFHR VLQGQEFRGS RSHGVVCSES PGVPNFQSPD NRRFSADMRG YMMPASGPPQ RNTEFTYQPI GFSESLGFPE VLQGQEMSQV VPLFRGATFG ARTQNDRVVS ANSVHRSAAQ SGLLASTLGH PISQFTLSSS KVSSPSSVLM FNQATAPNHE TVSGTNNKGM HVSQFASQEM LSETVTWPGT QRQTPSEITS NQFALARIPA PPSGAESGLP KRDAGRSSCR LFGFSLTGNM LGEDGEGLDD GAIEAGCENP PVLELFGHSH STPGALHALC AAAPLGM // ID Y2641_ORYSJ Reviewed; 190 AA. AC Q0DXB1; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 2. DT 15-MAR-2017, entry version 57. DE RecName: Full=B3 domain-containing protein Os02g0764100; GN OrderedLocusNames=Os02g0764100, LOC_Os02g52620; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF10127.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP008208; BAF10127.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014958; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR SMR; Q0DXB1; -. DR InParanoid; Q0DXB1; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q0DXB1; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 190 B3 domain-containing protein FT Os02g0764100. FT /FTId=PRO_0000376948. FT DNA_BIND 17 121 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 190 AA; 21047 MW; 52B92A473CE3998A CRC64; MGARAQPTPS WAREPLFEKA VTPSDVGKLN RLLVPKQHAE KHFPLRRTSS DASGVLLNFE DGEGKVWRFR YSCWNSSQSY VLTKGWSRFV REKGLRAGDT IVFSGSAYGP DKLLFIDCKK NNTAAATGDE KPITSGEATR VVRLFGMDIT GGGGDCRKRE RAVEMGQEAF LMKRQCVVHQ RTPALGALLL // ID ARFL_ORYSJ Reviewed; 818 AA. AC Q0J951; B9FD89; Q7XPI3; Q8S977; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 03-OCT-2006, sequence version 1. DT 05-JUL-2017, entry version 82. DE RecName: Full=Auxin response factor 12; DE AltName: Full=OsARF8; GN Name=ARF12; Synonyms=ARF8; GN OrderedLocusNames=Os04g0671900, LOC_Os04g57610; GN ORFNames=OsJ_16583 {ECO:0000312|EMBL:EEE61886.1}, OSJNBb0004A17.6; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [7] RP NUCLEOTIDE SEQUENCE [MRNA] OF 24-818. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [8] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAE03604.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL606652; CAE03604.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP008210; BAF16136.1; -; Genomic_DNA. DR EMBL; AP014960; BAS91572.1; -; Genomic_DNA. DR EMBL; CM000141; EEE61886.1; -; Genomic_DNA. DR EMBL; AK071455; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AB071298; BAB85918.1; -; mRNA. DR RefSeq; XP_015636874.1; XM_015781388.1. DR UniGene; Os.80192; -. DR ProteinModelPortal; Q0J951; -. DR SMR; Q0J951; -. DR STRING; 39947.LOC_Os04g57610.1; -. DR PaxDb; Q0J951; -. DR PRIDE; Q0J951; -. DR EnsemblPlants; OS04T0671900-01; OS04T0671900-01; OS04G0671900. DR GeneID; 4337363; -. DR Gramene; OS04T0671900-01; OS04T0671900-01; OS04G0671900. DR KEGG; osa:4337363; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q0J951; -. DR OMA; WLEKKCL; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000059680; Chromosome 4. DR ExpressionAtlas; Q0J951; baseline and differential. DR Genevisible; Q0J951; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 818 Auxin response factor 12. FT /FTId=PRO_0000299269. FT DOMAIN 719 803 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 135 237 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 607 613 Poly-Gln. FT CONFLICT 461 461 F -> L (in Ref. 6; AK071455). FT {ECO:0000305}. SQ SEQUENCE 818 AA; 90901 MW; 4C949AEFB2B9FC40 CRC64; MSSSSAASIG PPQPPPPPAP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAASTNKEVE GHIPNYPNLP AQLICQLHDV TMHADVETDE VYAQMTLQPL NPQEQNDAYL PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI HDIEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLSK YIKAVFHTRI SVGMRFRMLF ETEESSVRRY MGTITEVSDA DPVRWPSSYW RSVKVGWDES TAGERPPRVS LWEIEPLTTF PMYPSLFPLR VKHPWYSGVA SLHDDSNALM WLRGVAGEGG FQSLNFQSPG IGSWGQQRLH PSLLSSDHDQ YQAVVAAAAA SQSGGYLKQQ FLHLQQPMQS PQEHCNLNPL LQQQILQQAS QQQIINPDAQ NIQTMLSPSA IQQQLQQLQQ MQQVQNDQKQ KIQPDQSYQV PTSAVLPSPT SLPSHLREKF GFSDPNANSS SFITSSSSDN MLDSSFLQGS SKAVDLSRFN QPVASEQQQQ QQQAWKQKFM GSQSVSFGGS VLHNSPTSKD GSVENKIGRD VQNQSLFSPQ VDSSSLLYNM VPNLTSNVSD GNLSTIPSGS TYLQNAMYGC LDDSSGLLQN TGENDPATRT FVKVYKSGSV GRSLDITRFS NYAELREELG QMFGIKGQLD DPDRSGWQLV FVDRENDVLL LGDDPWESFV NSVWYIKILS PEDVHKMGKQ GNDPRYLS // ID ARFI_ORYSJ Reviewed; 673 AA. AC Q0JCZ4; A0A0P0WAR6; Q7XN92; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 03-OCT-2006, sequence version 1. DT 05-JUL-2017, entry version 79. DE RecName: Full=Auxin response factor 9; GN Name=ARF9; OrderedLocusNames=Os04g0442000, LOC_Os04g36054; GN ORFNames=OSJNBa0064D20.11; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAE04227.2; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL662973; CAE04227.2; ALT_INIT; Genomic_DNA. DR EMBL; AP008210; BAF14793.1; -; Genomic_DNA. DR EMBL; AP014960; BAS89354.1; -; Genomic_DNA. DR EMBL; AK064925; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015636800.1; XM_015781314.1. DR UniGene; Os.17070; -. DR ProteinModelPortal; Q0JCZ4; -. DR SMR; Q0JCZ4; -. DR STRING; 39947.LOC_Os04g36054.1; -. DR PaxDb; Q0JCZ4; -. DR EnsemblPlants; OS04T0442000-01; OS04T0442000-01; OS04G0442000. DR GeneID; 4335934; -. DR Gramene; OS04T0442000-01; OS04T0442000-01; OS04G0442000. DR KEGG; osa:4335934; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q0JCZ4; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q0JCZ4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 673 Auxin response factor 9. FT /FTId=PRO_0000299263. FT DOMAIN 547 639 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 152 152 L -> F (in Ref. 5; AK064925). FT {ECO:0000305}. SQ SEQUENCE 673 AA; 74748 MW; 44D5A41A286954C3 CRC64; MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFGLWKPPS EAAQTLSFSE PQRAREIFPS IPASIFSASS HVEFNSKNEP SILSNQFYWS MRDSKTDSFS ASTNKTRVER KQEPTTMGCR LFGIEISSAV EEALPAATVS GVGYDQTVLS VDVDSDQISQ PSNGNKSDAP GTSSERSPLE SQSRQVRSCT KVIMQGMAVG RAVDLTKLNG YGDLRSKLEE MFDIQGDLCP TLKRWQVVYT DDEDDMMLVG DDPWDEFCSM VKRIYIYSYE EAKLLAPKSK LPVIGDTIKL SSMNSSHESV DLDNHASVTN RDC // ID ARFB_ORYSJ Reviewed; 718 AA. AC Q0JKI9; Q8S984; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 03-OCT-2006, sequence version 1. DT 05-JUL-2017, entry version 72. DE RecName: Full=Auxin response factor 2; DE AltName: Full=ETTIN-like protein 2; DE AltName: Full=OsETTIN2; GN Name=ARF2; OrderedLocusNames=Os01g0670800, LOC_Os01g48060; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- INDUCTION: By auxin under dark condition. CC {ECO:0000269|PubMed:17408882}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB071291; BAB85911.1; -; mRNA. DR EMBL; AP008207; BAF05739.1; -; Genomic_DNA. DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; XP_015647511.1; XM_015792025.1. DR UniGene; Os.6367; -. DR ProteinModelPortal; Q0JKI9; -. DR SMR; Q0JKI9; -. DR STRING; 39947.LOC_Os01g48060.1; -. DR PaxDb; Q0JKI9; -. DR PRIDE; Q0JKI9; -. DR GeneID; 4325895; -. DR KEGG; osa:4325895; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q0JKI9; -. DR KO; K14486; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q0JKI9; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 718 Auxin response factor 2. FT /FTId=PRO_0000299255. FT DNA_BIND 147 249 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 718 AA; 78684 MW; 99B1309E31684D5A CRC64; MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY LPQGHLEHLG AAPGSGPGAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM REGEDGAACD GEGEDAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL QRPFQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE LRLGVRRAAQ LKNASPFPAL HNQISNTSSL SEVAHAVAVK SIFHIYYNPR LSQSEFIIPY WKFMRSFSQP FSVGMRFKLR YESEDASERR RTGIIIGSRE ADPMWHGSKW KCLVVKWDDD VECRRPNGVS PWEIELSGSV SGSHLSTPHS KRLKSCFPQV NPDIVLPNGS VSSDFAESAR FHKVLQGQEL LGLKTRDGTV NTASQATEAR NFQYTDERSC SINMSNNILG VPRLGVKTPS GNPGFSYHCS GFGESQRFQE VLQGQEVFRP YRGGTLSDAC IRGSGFRQPD GNHAPGAAFK WLAPQGCDHH GITTSVLPQA SSPSSVLMFP QTSSKMPGLE YIYGCLDRNE NSRHFKIGPT QDMTRTDQTL RLWPHLISGK VLDECTRNEK LHSPVSGAEH ESNNKCLNTN GCKIFGISLT EKAQAGDEVD CGNASYHSRL QSLKPQMPKS LGSSCATVHE QRPVVGRVVD ISAVNTMI // ID Y1341_ORYSJ Reviewed; 495 AA. AC Q0JP99; A0A0P0V028; Q5NAW9; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 03-OCT-2006, sequence version 1. DT 15-MAR-2017, entry version 65. DE RecName: Full=B3 domain-containing protein Os01g0234100; GN OrderedLocusNames=Os01g0234100, LOC_Os01g13300; ORFNames=P0702F03.19; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAD81380.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP002481; BAD81380.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP008207; BAF04429.1; -; Genomic_DNA. DR EMBL; AP014957; BAS71203.1; -; Genomic_DNA. DR EMBL; AK106332; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015623792.1; XM_015768306.1. DR UniGene; Os.54636; -. DR SMR; Q0JP99; -. DR PaxDb; Q0JP99; -. DR PRIDE; Q0JP99; -. DR EnsemblPlants; OS01T0234100-01; OS01T0234100-01; OS01G0234100. DR GeneID; 4324291; -. DR Gramene; OS01T0234100-01; OS01T0234100-01; OS01G0234100. DR KEGG; osa:4324291; -. DR eggNOG; ENOG410IHVK; Eukaryota. DR eggNOG; ENOG410YD7W; LUCA. DR InParanoid; Q0JP99; -. DR OMA; KIATAPW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q0JP99; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 495 B3 domain-containing protein FT Os01g0234100. FT /FTId=PRO_0000376944. FT DNA_BIND 152 243 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 453 453 K -> E (in Ref. 5; AK106332). FT {ECO:0000305}. SQ SEQUENCE 495 AA; 55530 MW; 23E0B6BB0C4E86CE CRC64; MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRAIIIDCDE DDTDDVMEVV PLKMLMPKEV ENEQRTVPGI PQTCNTQNTS NGRTNTTEVP VKGQNKCASY LPKKSSVQAF CGSAMKRAQE IQTKLPAEHP SFVKHMLHSH VVSGFWLGLP AGFCNKYLPK HDTDIVLEDE NGNNHNTNYL GGKQGLSAGW RGFAINHDIK VGDVVVFELV STTKFKVHII RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA HDDTQNLVHE AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA QKSFLHRHLL RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM NVAFLLKRVD DILGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV RNHDIALRKI ATAPW // ID Y3222_ORYSJ Reviewed; 378 AA. AC Q10GM3; A0A0P0W086; Q851V0; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 22-AUG-2006, sequence version 1. DT 07-JUN-2017, entry version 72. DE RecName: Full=B3 domain-containing protein Os03g0622200; GN OrderedLocusNames=Os03g0622200, LOC_Os03g42430; GN ORFNames=OsJ_11768, OSJNBb0111B07.22; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAO34502.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: Os03g0622100 and Os03g0622200.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC097280; AAO34502.1; ALT_SEQ; Genomic_DNA. DR EMBL; DP000009; ABF97678.1; -; Genomic_DNA. DR EMBL; AP008209; BAF12596.1; -; Genomic_DNA. DR EMBL; AP014959; BAS85315.1; -; Genomic_DNA. DR EMBL; CM000140; EEE59516.1; -; Genomic_DNA. DR EMBL; AK108660; BAG98481.1; -; mRNA. DR RefSeq; XP_015628568.1; XM_015773082.1. DR UniGene; Os.55723; -. DR SMR; Q10GM3; -. DR PaxDb; Q10GM3; -. DR PRIDE; Q10GM3; -. DR EnsemblPlants; OS03T0622200-01; OS03T0622200-01; OS03G0622200. DR GeneID; 4333474; -. DR Gramene; OS03T0622200-01; OS03T0622200-01; OS03G0622200. DR KEGG; osa:4333474; -. DR eggNOG; ENOG410JU89; Eukaryota. DR eggNOG; ENOG4110744; LUCA. DR OMA; MHASHVR; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q10GM3; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 378 B3 domain-containing protein FT Os03g0622200. FT /FTId=PRO_0000378052. FT DNA_BIND 29 124 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 256 370 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 42360 MW; 5F7C3BD0E67A3500 CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE EVNLRSPSGE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLFRYS GVSSSFDVLI FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRNGRRTPP IVDGDNGHRH HLEMTLHRNS CRSIPRACKR SLFSDETEAK ENDGEDEDVV AAAEGGRYGE YYFSRHGRVA EYNLREEDRE EISRVPVPVQ PGNPVFVQVI HSSHVRSSKY CIVGVSPEFA GKYLGAVERE VVLERASRGG EWHVPFVHRQ NTRGFYGAGW RQFAGDNRLV AHDVCLFELT MVDAAASGGG NRRRRWSRRP TMTVHVLRRV RGRFVLLR // ID Y3221_ORYSJ Reviewed; 382 AA. AC Q10GM4; A0A0P0W095; Q851V0; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 22-AUG-2006, sequence version 1. DT 15-MAR-2017, entry version 66. DE RecName: Full=B3 domain-containing protein Os03g0622100; GN OrderedLocusNames=Os03g0622100, LOC_Os03g42420; GN ORFNames=OSJNBb0111B07.22; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAO34502.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: Os03g0622100 and Os03g0622200.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC097280; AAO34502.1; ALT_SEQ; Genomic_DNA. DR EMBL; DP000009; ABF97677.1; -; Genomic_DNA. DR EMBL; AP008209; BAF12595.1; -; Genomic_DNA. DR EMBL; AP014959; BAS85314.1; -; Genomic_DNA. DR EMBL; AK063506; BAG88742.1; -; mRNA. DR RefSeq; XP_015630283.1; XM_015774797.1. DR UniGene; Os.51715; -. DR SMR; Q10GM4; -. DR PaxDb; Q10GM4; -. DR EnsemblPlants; OS03T0622100-01; OS03T0622100-01; OS03G0622100. DR GeneID; 4333473; -. DR Gramene; OS03T0622100-01; OS03T0622100-01; OS03G0622100. DR KEGG; osa:4333473; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000244154; -. DR InParanoid; Q10GM4; -. DR OMA; HKNSSRC; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q10GM4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 382 B3 domain-containing protein FT Os03g0622100. FT /FTId=PRO_0000378051. FT DNA_BIND 29 123 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 261 363 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 382 AA; 42969 MW; 764CF0776382636F CRC64; MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE VVNLKSPSGK TWSIGVAYSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS ACKRGLFSDE IEQDHREEKK EGDDEDEDED EDEDVDKDGE DRYYFCRHGG RVTEYNLSKG DKEEISRVPV PVEPGNPVLV KVIHASHLLS SRYSTVGVSP EFAGRYLGPA MAREVVMERG GGGGGGDQWH VRFVRRESSR GFHGTGWRRF ARDNGLLAHD VCLFELRLVD GAGAGDRLRR RPRPTMAVHV LRRVRGRFVL IR // ID Y3198_ORYSJ Reviewed; 253 AA. AC Q10GP0; Q6AV20; Q851X1; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 22-AUG-2006, sequence version 1. DT 12-APR-2017, entry version 58. DE RecName: Full=Putative B3 domain-containing protein Os03g0619850; GN OrderedLocusNames=Os03g0619850, LOC_Os03g42250; GN ORFNames=OSJNBa0063J18.22, OSJNBb0111B07.1; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAT77045.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC097280; AAO34484.1; -; Genomic_DNA. DR EMBL; AC107206; AAT77045.1; ALT_SEQ; Genomic_DNA. DR EMBL; DP000009; ABF97661.1; -; Genomic_DNA. DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PaxDb; Q10GP0; -. DR InParanoid; Q10GP0; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q10GP0; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 253 Putative B3 domain-containing protein FT Os03g0619850. FT /FTId=PRO_0000378048. FT DNA_BIND 26 119 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 253 AA; 28133 MW; 322033D7D61A25FC CRC64; MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTTDSMHS MIIPDRFVNH FGGKIPGTIK LESPNGILYV VEVTECMNKT VLQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG SENVSLKSNR NGVSDESQES EDSEGPAGPP YILSWKSKSR LSSLQKKIIK EKVRSIQSEV PIYVAIMNKS NIGLTSSPCQ LELGARYAAA VHLPDRRQAV VLQRGAAMGH RDADQERQMH HQAVPDQWLE QDS // ID Y3123_ORYSJ Reviewed; 270 AA. AC Q10Q26; A0A0P0VUT0; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 22-AUG-2006, sequence version 1. DT 07-JUN-2017, entry version 67. DE RecName: Full=B3 domain-containing protein Os03g0212300; GN OrderedLocusNames=Os03g0212300, LOC_Os03g11370; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DP000009; ABF94608.1; -; Genomic_DNA. DR EMBL; AP008209; BAF11268.1; -; Genomic_DNA. DR EMBL; AP014959; BAS82927.1; -; Genomic_DNA. DR EMBL; AK070861; BAG92179.1; -; mRNA. DR RefSeq; XP_015628624.1; XM_015773138.1. DR UniGene; Os.7036; -. DR SMR; Q10Q26; -. DR PaxDb; Q10Q26; -. DR EnsemblPlants; OS03T0212300-01; OS03T0212300-01; OS03G0212300. DR GeneID; 4332037; -. DR Gramene; OS03T0212300-01; OS03T0212300-01; OS03G0212300. DR KEGG; osa:4332037; -. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; Q10Q26; -. DR OMA; WNVEINR; -. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q10Q26; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 270 B3 domain-containing protein FT Os03g0212300. FT /FTId=PRO_0000378045. FT DNA_BIND 13 110 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 265 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 125 134 Poly-Ser. FT COMPBIAS 136 145 Poly-Ala. SQ SEQUENCE 270 AA; 30746 MW; A342D908EE119231 CRC64; MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRRHH DAAESGSSSS SDSSDAAAAV ATAAAEGVGD VALSQFAVTL RQCNLEDKQA QYLNVPMEFQ EAHEYARREK VVLRMRGEAW TVRLKHSRRE RGQRTAFRYG WHRFCVDNGL AVGDTCFFRV LREGDLRRGG AADDHVLKVA VRKADGTTLE // ID Y3845_ORYSJ Reviewed; 237 AA. AC Q10QS9; A0A0P0VTZ5; Q94HG5; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 22-AUG-2006, sequence version 1. DT 05-JUL-2017, entry version 68. DE RecName: Full=B3 domain-containing protein Os03g0184500; GN OrderedLocusNames=Os03g0184500, LOC_Os03g08620; GN ORFNames=OsJ_09687, OSJNBa0032G08.2; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC079633; AAK92622.1; -; Genomic_DNA. DR EMBL; DP000009; ABF94348.1; -; Genomic_DNA. DR EMBL; AP008209; BAF11104.1; -; Genomic_DNA. DR EMBL; AP014959; BAS82662.1; -; Genomic_DNA. DR EMBL; CM000140; EAZ25847.1; -; Genomic_DNA. DR EMBL; AK122017; BAH00755.1; -; mRNA. DR RefSeq; XP_015633231.1; XM_015777745.1. DR UniGene; Os.9079; -. DR SMR; Q10QS9; -. DR PaxDb; Q10QS9; -. DR PRIDE; Q10QS9; -. DR EnsemblPlants; OS03T0184500-01; OS03T0184500-01; OS03G0184500. DR GeneID; 4331858; -. DR Gramene; OS03T0184500-01; OS03T0184500-01; OS03G0184500. DR KEGG; osa:4331858; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; Q10QS9; -. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q10QS9; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 237 B3 domain-containing protein FT Os03g0184500. FT /FTId=PRO_0000378054. FT DNA_BIND 137 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 237 AA; 26569 MW; C72DB584F9E94066 CRC64; MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK // ID Y3918_ARATH Reviewed; 277 AA. AC Q1G3M3; Q9LJL1; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 27-JUN-2006, sequence version 1. DT 12-APR-2017, entry version 65. DE RecName: Full=B3 domain-containing protein At3g19184; GN OrderedLocusNames=At3g19184; ORFNames=MVI11; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10907853; DOI=10.1093/dnares/7.3.217; RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. RT Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC RT and BAC clones."; RL DNA Res. 7:217-221(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x; RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.; RT "Simultaneous high-throughput recombinational cloning of open reading RT frames in closed and open configurations."; RL Plant Biotechnol. J. 4:317-324(2006). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB02959.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP000419; BAB02959.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE76205.1; -; Genomic_DNA. DR EMBL; DQ487561; ABF59230.1; -; mRNA. DR EMBL; AB493621; BAH30459.1; -; mRNA. DR RefSeq; NP_001030726.2; NM_001035649.4. DR UniGene; At.63238; -. DR ProteinModelPortal; Q1G3M3; -. DR SMR; Q1G3M3; -. DR STRING; 3702.AT3G19184.1; -. DR PaxDb; Q1G3M3; -. DR EnsemblPlants; AT3G19184.1; AT3G19184.1; AT3G19184. DR GeneID; 3768753; -. DR Gramene; AT3G19184.1; AT3G19184.1; AT3G19184. DR KEGG; ath:AT3G19184; -. DR Araport; AT3G19184; -. DR TAIR; locus:1009023252; AT3G19184. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; Q1G3M3; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR PhylomeDB; Q1G3M3; -. DR PRO; PR:Q1G3M3; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q1G3M3; baseline and differential. DR Genevisible; Q1G3M3; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 277 B3 domain-containing protein At3g19184. FT /FTId=PRO_0000375144. FT DNA_BIND 130 221 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 38 45 Poly-Ser. SQ SEQUENCE 277 AA; 31647 MW; 893D14B463AE4F2D CRC64; MVESELSYEQ IRLNRVEENK KRMGELNLNK LAQSLRVSSS SSSSSKPSPA KPRTMRIPVD FSEVRRSSRA KGPPPSYKEF GLEPLERRPR RSSRRRDLLN RVYASDDARM YAFDRAEKLQ SSLDSEYASF TKPMLQSHVT GGFWLGLPLP FCKAHMPKRD VIMTLVDEEE EESQAKYLAQ KNGLSGGWRG FAIDHQLVDG DAVVFHLIAR TTFKVYIIRV NDDANNDSDG NEVNDDDSDG NEEDRDNDNE SNEKQKETVS EGRQLRSSGK RKRRGRK // ID Y5547_ARATH Reviewed; 280 AA. AC Q1PDT6; A0MFH8; Q8LC00; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 16-MAY-2006, sequence version 1. DT 05-JUL-2017, entry version 67. DE RecName: Full=B3 domain-containing protein At5g25470; GN OrderedLocusNames=At5g25470; ORFNames=T14C9.20; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130714; DOI=10.1038/35048507; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., RA Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., RA Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., RA van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., RA Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., RA Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., RA Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., RA Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x; RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.; RT "Simultaneous high-throughput recombinational cloning of open reading RT frames in closed and open configurations."; RL Plant Biotechnol. J. 4:317-324(2006). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., RA Feldmann K.A.; RT "Full-length cDNA from Arabidopsis thaliana."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAM63943.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=ABK28711.1; Type=Erroneous termination; Positions=281; Note=Translated as stop.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CP002688; AED93447.1; -; Genomic_DNA. DR EMBL; CP002688; AED93448.1; -; Genomic_DNA. DR EMBL; CP002688; ANM70434.1; -; Genomic_DNA. DR EMBL; DQ446982; ABE66179.1; -; mRNA. DR EMBL; DQ653304; ABK28711.1; ALT_SEQ; mRNA. DR EMBL; AY086898; AAM63943.1; ALT_INIT; mRNA. DR RefSeq; NP_001318648.1; NM_001343929.1. DR RefSeq; NP_568472.1; NM_122457.5. DR RefSeq; NP_851074.1; NM_180743.4. DR UniGene; At.19291; -. DR UniGene; At.23562; -. DR ProteinModelPortal; Q1PDT6; -. DR SMR; Q1PDT6; -. DR STRING; 3702.AT5G25470.1; -. DR PaxDb; Q1PDT6; -. DR EnsemblPlants; AT5G25470.1; AT5G25470.1; AT5G25470. DR EnsemblPlants; AT5G25470.2; AT5G25470.2; AT5G25470. DR EnsemblPlants; AT5G25470.3; AT5G25470.3; AT5G25470. DR GeneID; 832621; -. DR Gramene; AT5G25470.1; AT5G25470.1; AT5G25470. DR Gramene; AT5G25470.2; AT5G25470.2; AT5G25470. DR Gramene; AT5G25470.3; AT5G25470.3; AT5G25470. DR KEGG; ath:AT5G25470; -. DR Araport; AT5G25470; -. DR TAIR; locus:2179464; AT5G25470. DR eggNOG; ENOG410JT0G; Eukaryota. DR eggNOG; ENOG41108B0; LUCA. DR HOGENOM; HOG000155371; -. DR InParanoid; Q1PDT6; -. DR OMA; VHETQSK; -. DR OrthoDB; EOG09360KTU; -. DR PhylomeDB; Q1PDT6; -. DR PRO; PR:Q1PDT6; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q1PDT6; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 280 B3 domain-containing protein At5g25470. FT /FTId=PRO_0000375156. FT DNA_BIND 20 114 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 183 276 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 6 6 A -> F (in Ref. 4; AAM63943). FT {ECO:0000305}. SQ SEQUENCE 280 AA; 32023 MW; C625336D3FE59861 CRC64; MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE HRVVFSVRWG NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH DDKMFLEVQI FKNDGNEIID APPEVEPETE PFHPTTPKNS HKETTTASAS ASASEFSDNW RETHGCADIK NPELYLLNPK NPYFVKTLTK GNDVLYVPKT VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF NGWVDLCRKY NLKTGDSMVC ELERSGELVT AVRVHFINKT // ID Y3622_ARATH Reviewed; 174 AA. AC Q1PES7; A0MEU6; Q9M8J6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 16-MAY-2006, sequence version 1. DT 05-JUL-2017, entry version 61. DE RecName: Full=B3 domain-containing protein At3g06220; GN OrderedLocusNames=At3g06220; ORFNames=F28L1.16; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130713; DOI=10.1038/35048706; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x; RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.; RT "Simultaneous high-throughput recombinational cloning of open reading RT frames in closed and open configurations."; RL Plant Biotechnol. J. 4:317-324(2006). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF30315.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=ABK28546.1; Type=Erroneous termination; Positions=175; Note=Translated as stop.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC018907; AAF30315.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE74362.1; -; Genomic_DNA. DR EMBL; DQ446640; ABE65921.1; -; mRNA. DR EMBL; DQ653069; ABK28546.1; ALT_SEQ; mRNA. DR EMBL; AB493604; BAH30442.1; -; mRNA. DR RefSeq; NP_187273.2; NM_111497.3. DR UniGene; At.53201; -. DR ProteinModelPortal; Q1PES7; -. DR SMR; Q1PES7; -. DR STRING; 3702.AT3G06220.1; -. DR PaxDb; Q1PES7; -. DR EnsemblPlants; AT3G06220.1; AT3G06220.1; AT3G06220. DR GeneID; 819796; -. DR Gramene; AT3G06220.1; AT3G06220.1; AT3G06220. DR KEGG; ath:AT3G06220; -. DR Araport; AT3G06220; -. DR TAIR; locus:2082480; AT3G06220. DR HOGENOM; HOG000155280; -. DR InParanoid; Q1PES7; -. DR OMA; VTPMPVE; -. DR OrthoDB; EOG09360YM3; -. DR PhylomeDB; Q1PES7; -. DR PRO; PR:Q1PES7; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q1PES7; baseline and differential. DR Genevisible; Q1PES7; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 174 B3 domain-containing protein At3g06220. FT /FTId=PRO_0000375141. FT DNA_BIND 8 101 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 174 AA; 19411 MW; A2A7E69057CB97C1 CRC64; MASGDVLPRF YTVFLSCVSS NSLLIPRSYY EHLPRRLPKT AILTGTGGRV WKVAMMSKRE QVYLARGWEN FVADNELKDG EFLTFVFDGY KSYEVSIYGR GSCKETRAVV HVEEISDESE SDNDSLGSLV DVTPMPAEEN SDDTEGDNDS CDSVVDVTPM PVEEISDASD SDYY // ID LEC2_ARATH Reviewed; 363 AA. AC Q1PFR7; A0ME96; Q93VR5; Q9FZA3; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 16-MAY-2006, sequence version 1. DT 07-JUN-2017, entry version 73. DE RecName: Full=B3 domain-containing transcription factor LEC2; DE AltName: Full=Protein LEAFY COTYLEDON 2; GN Name=LEC2; OrderedLocusNames=At1g28300; ORFNames=F3H9.5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], FUNCTION, AND DEVELOPMENTAL RP STAGE. RX PubMed=11573014; DOI=10.1073/pnas.201413498; RA Stone S.L., Kwong L.W., Yee K.M., Pelletier J., Lepiniec L., RA Fischer R.L., Goldberg R.B., Harada J.J.; RT "LEAFY COTYLEDON2 encodes a B3 domain transcription factor that RT induces embryo development."; RL Proc. Natl. Acad. Sci. U.S.A. 98:11806-11811(2001). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=15208423; DOI=10.1104/pp.104.042176; RA Gong W., Shen Y.-P., Ma L.-G., Pan Y., Du Y.-L., Wang D.-H., RA Yang J.-Y., Hu L.-D., Liu X.-F., Dong C.-X., Ma L., Chen Y.-H., RA Yang X.-Y., Gao Y., Zhu D., Tan X., Mu J.-Y., Zhang D.-B., Liu Y.-L., RA Dinesh-Kumar S.P., Li Y., Wang X.-P., Gu H.-Y., Qu L.-J., Bai S.-N., RA Lu Y.-T., Li J.-Y., Zhao J.-D., Zuo J., Huang H., Deng X.-W., RA Zhu Y.-X.; RT "Genome-wide ORFeome cloning and analysis of Arabidopsis transcription RT factor genes."; RL Plant Physiol. 135:773-782(2004). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x; RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.; RT "Simultaneous high-throughput recombinational cloning of open reading RT frames in closed and open configurations."; RL Plant Biotechnol. J. 4:317-324(2006). RN [6] RP DISRUPTION PHENOTYPE. RX PubMed=12244265; DOI=10.1105/tpc.6.8.1049; RA Meinke D.W., Franzmann L.H., Nickle T.C., Yeung E.C.; RT "Leafy cotyledon mutants of Arabidopsis."; RL Plant Cell 6:1049-1064(1994). RN [7] RP FUNCTION. RX PubMed=16492731; DOI=10.1073/pnas.0511331103; RA Braybrook S.A., Stone S.L., Park S., Bui A.Q., Le B.H., Fischer R.L., RA Goldberg R.B., Harada J.J.; RT "Genes directly regulated by LEAFY COTYLEDON2 provide insight into the RT control of embryo maturation and somatic embryogenesis."; RL Proc. Natl. Acad. Sci. U.S.A. 103:3468-3473(2006). RN [8] RP FUNCTION. RX PubMed=18287041; DOI=10.1073/pnas.0712364105; RA Stone S.L., Braybrook S.A., Paula S.L., Kwong L.W., Meuser J., RA Pelletier J., Hsieh T.-F., Fischer R.L., Goldberg R.B., Harada J.J.; RT "Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin RT activity: implications for somatic embryogenesis."; RL Proc. Natl. Acad. Sci. U.S.A. 105:3151-3156(2008). RN [9] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Transcription regulator that plays a central role in CC embryo development. Required for the maintenance of suspensor CC morphology, specification of cotyledon identity, progression CC through the maturation phase and suppression of premature CC germination. Ectopic expression is sufficient to promote somatic CC embryogenesis. {ECO:0000269|PubMed:11573014, CC ECO:0000269|PubMed:16492731, ECO:0000269|PubMed:18287041}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- DEVELOPMENTAL STAGE: Expressed during embryo development. CC {ECO:0000269|PubMed:11573014}. CC -!- DISRUPTION PHENOTYPE: Pigmented seeds. Distorted seedlings with CC elongated hypocotyl and curled cotyledons. Presence of trichomes CC and accumulation of anthocyanins on cotyledons. Unusual pattern of CC storage product accumulation in seedlings. CC {ECO:0000269|PubMed:12244265}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF98425.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=ABK28418.1; Type=Erroneous termination; Positions=364; Note=Translated as stop.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF400123; AAL12004.1; -; mRNA. DR EMBL; AF400124; AAL12005.1; -; Genomic_DNA. DR EMBL; AC021044; AAF98425.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE30945.1; -; Genomic_DNA. DR EMBL; AJ630496; CAG25869.1; -; mRNA. DR EMBL; AY568668; AAS79558.1; -; mRNA. DR EMBL; DQ446296; ABE65660.1; -; mRNA. DR EMBL; DQ652865; ABK28418.1; ALT_SEQ; mRNA. DR PIR; C86409; C86409. DR RefSeq; NP_564304.1; NM_102595.2. DR UniGene; At.26290; -. DR ProteinModelPortal; Q1PFR7; -. DR SMR; Q1PFR7; -. DR STRING; 3702.AT1G28300.1; -. DR PaxDb; Q1PFR7; -. DR EnsemblPlants; AT1G28300.1; AT1G28300.1; AT1G28300. DR GeneID; 839724; -. DR Gramene; AT1G28300.1; AT1G28300.1; AT1G28300. DR KEGG; ath:AT1G28300; -. DR Araport; AT1G28300; -. DR TAIR; locus:2032170; AT1G28300. DR eggNOG; ENOG410JDJ2; Eukaryota. DR eggNOG; ENOG41116MG; LUCA. DR HOGENOM; HOG000113311; -. DR InParanoid; Q1PFR7; -. DR OMA; RERNHYE; -. DR OrthoDB; EOG09360FID; -. DR PhylomeDB; Q1PFR7; -. DR PRO; PR:Q1PFR7; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q1PFR7; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR. DR GO; GO:0010601; P:positive regulation of auxin biosynthetic process; IMP:TAIR. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR. DR GO; GO:0010431; P:seed maturation; IMP:TAIR. DR GO; GO:0010344; P:seed oilbody biogenesis; IMP:TAIR. DR GO; GO:0010262; P:somatic embryogenesis; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 363 B3 domain-containing transcription factor FT LEC2. FT /FTId=PRO_0000375090. FT DNA_BIND 171 272 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 339 341 SMP -> MT (in Ref. 1; AAL12004/AAL12005 FT and 4; AAS79558/CAG25869). {ECO:0000305}. SQ SEQUENCE 363 AA; 41708 MW; 5CF6D8ABE53CD45A CRC64; MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW // ID ARFL_ORYSI Reviewed; 816 AA. AC Q258Y5; A2XYU3; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 18-APR-2006, sequence version 1. DT 05-JUL-2017, entry version 57. DE RecName: Full=Auxin response factor 12; DE AltName: Full=OsARF8; GN Name=ARF12; Synonyms=ARF8; ORFNames=H0624F09.13, OsI_017236; OS Oryza sativa subsp. indica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39946; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Guang-Lu-Ai No.4; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. 93-11; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [3] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL732356; CAH67705.1; -; Genomic_DNA. DR EMBL; CM000129; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR ProteinModelPortal; Q258Y5; -. DR SMR; Q258Y5; -. DR STRING; 39946.BGIOSGA014119-PA; -. DR PRIDE; Q258Y5; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR Proteomes; UP000007015; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 816 Auxin response factor 12. FT /FTId=PRO_0000299268. FT DOMAIN 717 801 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 135 237 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 816 AA; 90645 MW; 3E5683AC4FCD313B CRC64; MSSSSAASIG PPQPPPPPAP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAASTNKEVE GHIPNYPNLP AQLICQLHDV TMHADVETDE VYAQMTLQPL NPQEQNDAYL PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI HDIEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLSK YIKAVFHTRI SVGMRFRMLF ETEESSVRRY MGTITEVSDA DPVRWPSSYW RSVKVGWDES TAGERPPRVS LWEIEPLTTF PMYPSLFPLR VKHPWYSGVA SLHDDSNALM WLRGVAGEGG FQSLNFQSPG IGSWGQQRLH PSLLSSDHDQ YQAVVAAAAA SQSGGYLKQQ FLHLQQPMQS PQEHCNLNPL LQQQILQQAS QQQIINPDAQ NIQTMLSPSA IQQQLQQLQQ MQQVQNDQKQ KIQPDQSYQV PTSAVLPSPT SLPSHLREKF GFSDPNANSS SFITSSSSDN MLDSSFLQGS SKAVDLSRFN QPVASEQQQQ QAWKQKFMGS QSVSFGGSVL HNSPTSKDGS VENKIGRDVQ NQSLFSPQVD SSSLLYNMVP NLTSNVSDGN LSTIPSGSTY LQNAMYGCLD DSSGLLQNTG ENDPATRTFV KVYKSGSVGR SLDITRFSNY AELREELGQM FGIKGQLDDP DRSGWQLVFV DRENDVLLLG DDPWESFVNS VWYIKILSPE DVHKMGKQGN DPRYLS // ID Q2HSV9_MEDTR Unreviewed; 810 AA. AC Q2HSV9; A0A0C3V7V1; G7IKR5; DT 21-MAR-2006, integrated into UniProtKB/TrEMBL. DT 21-MAR-2006, sequence version 1. DT 05-JUL-2017, entry version 77. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_2g093740 {ECO:0000313|EMBL:AES67442.2}; GN ORFNames=MtrDRAFT_AC150891g17v2 {ECO:0000313|EMBL:ABD33064.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880; RN [1] {ECO:0000313|EMBL:ABD33064.1} RP NUCLEOTIDE SEQUENCE. RA Town C.D.; RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ABD33064.1} RP NUCLEOTIDE SEQUENCE. RG The International Medicago Genome Annotation Group; RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AES67442.2, ECO:0000313|EnsemblPlants:AES67442, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES67442.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES67442, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [4] {ECO:0000313|EMBL:AES67442.2} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [5] {ECO:0000313|EnsemblPlants:AES67442} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES67442}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC150891; ABD33064.1; -; Genomic_DNA. DR EMBL; CM001218; AES67442.2; -; Genomic_DNA. DR RefSeq; XP_003597191.2; XM_003597143.2. DR ProteinModelPortal; Q2HSV9; -. DR EnsemblPlants; AES67442; AES67442; MTR_2g093740. DR GeneID; 11416074; -. DR Gramene; AES67442; AES67442; MTR_2g093740. DR KEGG; mtr:MTR_2g093740; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000002051; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 168 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 682 766 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 168 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 810 AA; 90085 MW; 6CAD3BB2913B4488 CRC64; MEIDLNDSIT EVKKNVCSNG KCEKSVCCVC TLSSSSSPTC SSSSSTSAIV SSSYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQVASLS LFSSLEIPTY GLQPQILCRV VNVQLLANKE NDEVYTQVAL LPQAELAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVGWKF RHIYRGQPRR HLLTTGWSIF VSQKNLVSGD AVLFLRGENG ELRLGIRRAA RPRNGLPESI IGNQSCSPSF LSSVANAISA KSMFHVFYSP RASHADFVVP YQKYAKSIRN PVTIGTRFKM KFEMDESPER RCSSGIVTGM SDLDPYKWPK SKWRCLMVRW DEDIGANHQD RVSPWEIDPS TSLPPLNIQS SRRLKKLRTG LHVESPSHFI TAGDSGFMDF DESIRSSKVL QGQEKTSFMS LYYGCDTVTK QKEFDINSLR HTNLASNGAR KITSSEFTRI QPSSYADFTE MNRFPRVLQA QEIYPLRSLT GKVDLNLNSW GKTNVSYTKY NLHNATKLNF HSLGSEVLQN SSFPYGDIHK VGQGSSMLCS KPTNFQLGNV SFNTPSSQIG ALRNEVGLSS FKIRNEQKLQ NDISAATSLD ANIRISNDEN FKEMVNPCKL FGFSLSAAAE TTSQNLQNSA KRSCTKVHKQ GSLVGRAIDL SRLSSYNDLV SELERLFGME GLLRDPDKGW RILYTDSEND IMVVGDDPWH EFCDMVSKIH IYTQEEVEKM TIGMMNDDNQ SCLEQTPLIM EASKSSSVGQ PDSSTTVVRI // ID Q2HUJ5_MEDTR Unreviewed; 314 AA. AC Q2HUJ5; DT 21-MAR-2006, integrated into UniProtKB/TrEMBL. DT 21-MAR-2006, sequence version 1. DT 07-JUN-2017, entry version 66. DE SubName: Full=B3 domain transcription factor {ECO:0000313|EMBL:AES80688.1}; DE SubName: Full=Transcriptional factor B3 {ECO:0000313|EMBL:ABD32571.1}; GN OrderedLocusNames=MTR_7g083700 {ECO:0000313|EMBL:AES80688.1}; GN ORFNames=MtrDRAFT_AC149131g24v2 {ECO:0000313|EMBL:ABD32571.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880; RN [1] {ECO:0000313|EMBL:ABD32571.1} RP NUCLEOTIDE SEQUENCE. RA Town C.D.; RL Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ABD32571.1} RP NUCLEOTIDE SEQUENCE. RG The International Medicago Genome Annotation Group; RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AES80688.1, ECO:0000313|EnsemblPlants:AES80688, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES80688.1}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES80688, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [4] {ECO:0000313|EMBL:AES80688.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [5] {ECO:0000313|EnsemblPlants:AES80688} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES80688}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC149131; ABD32571.1; -; Genomic_DNA. DR EMBL; CM001223; AES80688.1; -; Genomic_DNA. DR RefSeq; XP_003624470.1; XM_003624422.1. DR ProteinModelPortal; Q2HUJ5; -. DR EnsemblPlants; AES80688; AES80688; MTR_7g083700. DR GeneID; 11427060; -. DR Gramene; AES80688; AES80688; MTR_7g083700. DR KEGG; mtr:MTR_7g083700; -. DR OMA; VHRKKRM; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010373; P:negative regulation of gibberellin biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0010116; P:positive regulation of abscisic acid biosynthetic process; IEA:EnsemblPlants. DR GO; GO:0008284; P:positive regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0010262; P:somatic embryogenesis; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 35493 MW; 6F0C5CC6A6975A0C CRC64; MMMDEGEGKK KVVVQKTEAC GFMAGVEDEL GFVNVKGDNN NGSGQRIHHD HGFVAAAFGT VHRKKRMARQ RRSSSSTITI HLKNLPSSTT TTTTTTTSHV PISPIPPLFH SLPPAREIDH RRLRFLFQKE LKNSDVSSLR RMVLPKKAAE AFLPVLESKE GILLSMDDLD GLHVWSFKYR FWPNNNSRMY VLENTGDFVS THGLRFGDSI MVYQDNQNHN YVIQAKKACD QDEYMEEAND TINHIFVDDY EVNKSCFDVA YPAMNDTSMS FIYDTTISND SPLDFLGGSM TNYSRIGSVE TFGSVENLSL DDFY // ID Q2HV56_MEDTR Unreviewed; 648 AA. AC Q2HV56; A0A0C3WE01; G7L2T9; DT 21-MAR-2006, integrated into UniProtKB/TrEMBL. DT 21-MAR-2006, sequence version 1. DT 05-JUL-2017, entry version 69. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN OrderedLocusNames=MTR_7g101280 {ECO:0000313|EMBL:AES81853.2}; GN ORFNames=MTR_0041s0110 {ECO:0000313|EMBL:KEH17131.1}, GN MtrDRAFT_AC148995g9v2 {ECO:0000313|EMBL:ABD32795.1}; OS Medicago truncatula (Barrel medic) (Medicago tribuloides). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Trifolieae; Medicago. OX NCBI_TaxID=3880; RN [1] {ECO:0000313|EMBL:ABD32795.1} RP NUCLEOTIDE SEQUENCE. RA Town C.D.; RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:ABD32795.1} RP NUCLEOTIDE SEQUENCE. RG The International Medicago Genome Annotation Group; RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:AES81853.2, ECO:0000313|EnsemblPlants:AES81853, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:AES81853.2}, and RC cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES81853, RC ECO:0000313|Proteomes:UP000002051}; RX PubMed=22089132; DOI=10.1038/nature10625; RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., RA Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., RA Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., RA Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., RA Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., RA Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., RA Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., RA Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., RA Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., RA Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., RA Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., RA Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., RA Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., RA Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., RA Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., RA Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.; RT "The Medicago genome provides insight into the evolution of rhizobial RT symbioses."; RL Nature 480:520-524(2011). RN [4] {ECO:0000313|EMBL:AES81853.2, ECO:0000313|Proteomes:UP000002051} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A17 {ECO:0000313|EMBL:KEH17131.1}, and RC cv. Jemalong A17 {ECO:0000313|Proteomes:UP000002051}; RX PubMed=24767513; DOI=10.1186/1471-2164-15-312; RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S., RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F., RA Schwartz D.C., Town C.D.; RT "An improved genome release (version Mt4.0) for the model legume RT Medicago truncatula."; RL BMC Genomics 15:312-312(2014). RN [5] {ECO:0000313|EnsemblPlants:AES81853} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES81853}; RG EnsemblPlants; RL Submitted (APR-2015) to UniProtKB. RN [6] {ECO:0000313|EnsemblPlants:KEH17131} RP IDENTIFICATION. RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH17131}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC148995; ABD32795.1; -; Genomic_DNA. DR EMBL; CM001223; AES81853.2; -; Genomic_DNA. DR EMBL; KL402766; KEH17131.1; -; Genomic_DNA. DR RefSeq; XP_003625635.2; XM_003625587.2. DR RefSeq; XP_013443106.1; XM_013587652.1. DR ProteinModelPortal; Q2HV56; -. DR EnsemblPlants; AES81853; AES81853; MTR_7g101280. DR EnsemblPlants; KEH17131; KEH17131; MTR_0041s0110. DR GeneID; 11441970; -. DR GeneID; 25479915; -. DR Gramene; AES81853; AES81853; MTR_7g101280. DR Gramene; KEH17131; KEH17131; MTR_0041s0110. DR KEGG; mtr:MTR_0041s0110; -. DR KEGG; mtr:MTR_7g101280; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000002051; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000002051}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000002051}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 648 AA; 72449 MW; BE433EC93E5E3F26 CRC64; MKEKRKGCSP TEMNMESKKK LKNVNKSVDP QLWHAVAGGM VQMPEVNSQV FYFPQGHAEH ACEPVNFSSY SKIPSFIPCR VEAIRYMANH ETDEVYAKLR LVPMNINQVS FDNDGVAGIN VSETKDKHQS FAKTLTQSDA NNGGGFSCPR YCAETLFPRL DYSANPPLQD IFPKDVHGEK WHFRHVYRGT PKRHLLTTGW SPFVSDKKLA SGDSIVFLRS ENGDLHVGIR RAKRRNNVGV DPLSGWKSGS GIGICAAPPY GGFPSFSGEE DNKLRRNGKG NGLLISDGMM GRGKVKALEV IEAVRLGTNM QPFDVVYYPR SGTPEFFVKT SLIGMALQIR WCPGMRFKMA IETEDSSRIS WFIGTVASVQ AADPSWSDSM WRLLEVTWDE PELLKNVKRV NPWQVEIVSN MPSIPLSPFI PPRKKLRLPQ LPDFPIDGQF PMPTFPNNLL SPNIPIFYLP ETSPAGMQGA RHGHFGVTLP DFHNLPLGLF QPSFQQPFNN IATMPMTVPN NPALQKPNTS ENVSCSHSIS TSAQSSEKPD HAKPHQLVLF GQTIQVDAGN ENSEKKMSNH LSDLHLQGLS SRSSDARFEW NAENQHEETL AGETLEMKHS DFIRKARRLT ILMDSTSGAT TEDQQEKKEN HQFNCRAG // ID Q2LAI9_SOLLC Unreviewed; 811 AA. AC Q2LAI9; DT 21-FEB-2006, integrated into UniProtKB/TrEMBL. DT 21-FEB-2006, sequence version 1. DT 05-JUL-2017, entry version 82. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF4 {ECO:0000313|EMBL:ABC69715.1}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081; RN [1] {ECO:0000313|EMBL:ABC69715.1} RP NUCLEOTIDE SEQUENCE. RA Sabban M.; RL Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EnsemblPlants:Solyc11g069190.1.1} RP IDENTIFICATION. RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc11g069190.1.1}; RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DQ340259; ABC69715.1; -; mRNA. DR RefSeq; NP_001233771.1; NM_001246842.1. DR UniGene; Les.15997; -. DR STRING; 4081.Solyc11g069190.1.1; -. DR EnsemblPlants; Solyc11g069190.1.1; Solyc11g069190.1.1; Solyc11g069190.1. DR GeneID; 778241; -. DR Gramene; Solyc11g069190.1.1; Solyc11g069190.1.1; Solyc11g069190.1. DR KEGG; sly:778241; -. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR OMA; QSHANPV; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000004994; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000004994}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000004994}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 176 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 683 767 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 176 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 811 AA; 90331 MW; 3A116DA8987D0F27 CRC64; MEIDLNHALV SEVEKNVCCN EECDKGGGGG CVNCSLYTST TSSCSSNVSS SSSLALTSIY KELWHACAGP LTSLPKKGNV VVYFPQGHME EAVSAFPFSP VKIDLPTFGL QPQIFCRVED VQLLANKEND EVYTQLTLLP LPESMAISLE GKEHEDSGTD EEGNGVNPGK SASHMFCKTL TASDTTTHGG FSVPRRAAED CFPPLDYKEQ RPSQELIAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGEGGNL RLGIRRAARP RNGLPESIIK SQYSGPDVLS SVATALSAKS TFHVFYSPRA SHADFVVPYQ KYVKAINSRI PVGTRFKMKF DLDDSPERRY SGVVTGISDM DPFRWPNSKW RCLMVRWDED IMSNHQERVS PWEIDSSVSL PPLSIQSSPR LKKLRTSQQA PSVLDSHFAG GSALLDFEES IRSSKVLQGQ ENLGLISPPY GCDKPVRPLD FELQRVARHN LMPNGVENII VGDFVKTQPP TTYTGFLESN RFPKVLQGQE ICSLRSLTGK GDVNFGAWGK PEFGCNVFGT YQRPRANFYP LASEGARNVF LPYNAMYRAG QDPVVPSYST NFQRENPTLN QNSIQNVVRR EEVGMPKFVN EQRPPEMSKV SIPENHFKNE NDDSFNAQAP CKLFGFSLTK EPSTPSSQSS GKRSCTKVHK QGSLVGRAID LSRLNGYDDL LVELERLFNM EDLLRDPNKG WRILYTDSEN DMMVVGDDPW HEFCEVVSKI HIYTQEEVEK MTIEGISDDT QSCLEEAPAI MDVSKSSSVG QPDSSPTVIR I // ID ARF2A_SOLLC Reviewed; 846 AA. AC Q2LAJ3; DT 05-JUL-2017, integrated into UniProtKB/Swiss-Prot. DT 21-FEB-2006, sequence version 1. DT 05-JUL-2017, entry version 80. DE RecName: Full=Auxin response factor 2A {ECO:0000303|PubMed:26716451, ECO:0000303|PubMed:26959229}; DE Short=SlARF2A {ECO:0000303|PubMed:26716451}; GN Name=ARF2A {ECO:0000303|PubMed:26716451, ECO:0000303|PubMed:26959229}; GN Synonyms=ARF2 {ECO:0000303|PubMed:21735233, GN ECO:0000312|EMBL:ABC69711.1}; GN OrderedLocusNames=Solyc03g118290 {ECO:0000305|PubMed:26716451}; OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; OC Solaneae; Solanum; Lycopersicon. OX NCBI_TaxID=4081 {ECO:0000312|EMBL:ABC69711.1}; RN [1] {ECO:0000312|EMBL:ABC69711.1} RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. M82 {ECO:0000312|EMBL:ABC69711.1}; RA Mah S.A., Swanson W.J., Moy G.W., Vacquier V.D.; RL Submitted (JAN-2017) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Heinz 1706 {ECO:0000312|EMBL:CM001066}; RG Tomato Genome Sequencing Consortium; RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases. RN [3] RP TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND PHYLOGENETIC ANALYSIS. RX PubMed=21735233; DOI=10.1007/s00299-011-1113-z; RA Wu J., Wang F., Cheng L., Kong F., Peng Z., Liu S., Yu X., Lu G.; RT "Identification, isolation and expression analysis of auxin response RT factor (ARF) genes in Solanum lycopersicum."; RL Plant Cell Rep. 30:2059-2073(2011). RN [4] RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION, AND RP DISRUPTION PHENOTYPE. RX PubMed=26716451; DOI=10.1371/journal.pgen.1005649; RA Hao Y., Hu G., Breitel D., Liu M., Mila I., Frasse P., Fu Y., RA Aharoni A., Bouzayen M., Zouine M.; RT "Auxin response factor SlARF2 is an essential component of the RT regulatory mechanism controlling fruit ripening in tomato."; RL PLoS Genet. 11:E1005649-E1005649(2015). RN [5] RP FUNCTION, SUBUNIT, INTERACTION WITH ASR1, SUBCELLULAR LOCATION, RP DEVELOPMENTAL STAGE, INDUCTION, AND DISRUPTION PHENOTYPE. RX PubMed=26959229; DOI=10.1371/journal.pgen.1005903; RA Breitel D.A., Chappell-Maor L., Meir S., Panizel I., Puig C.P., RA Hao Y., Yifhar T., Yasuor H., Zouine M., Bouzayen M., RA Granell Richart A., Rogachev I., Aharoni A.; RT "AUXIN RESPONSE FACTOR 2 intersects hormonal signals in the regulation RT of tomato fruit ripening."; RL PLoS Genet. 12:E1005903-E1005903(2016). RN [6] RP FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, INDUCTION, AND RP DISRUPTION PHENOTYPE. RX PubMed=27645097; DOI=10.1038/srep33728; RA Xu T., Liu X., Wang R., Dong X., Guan X., Wang Y., Jiang Y., Shi Z., RA Qi M., Li T.; RT "SlARF2a plays a negative role in mediating axillary shoot RT formation."; RL Sci. Rep. 6:33728-33728(2016). RN [7] RP FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, INDUCTION, AND RP PHYLOGENETIC ANALYSIS. RX PubMed=28167023; DOI=10.1016/j.plantsci.2016.12.008; RA Ren Z., Liu R., Gu W., Dong X.; RT "The Solanum lycopersicum auxin response factor SlARF2 participates in RT regulating lateral root formation and flower organ senescence."; RL Plant Sci. 256:103-111(2017). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs) (By CC similarity). Could act as transcriptional activator or repressor CC (PubMed:26959229, PubMed:26716451, PubMed:27645097, CC PubMed:28167023). Involved in the control of fruit ripening CC process (PubMed:26959229, PubMed:26716451, PubMed:28167023). CC Regulates expression of a number of ripening regulators, CC transcription factors, and ethylene biosynthesis and signaling CC components (PubMed:26959229, PubMed:26716451). May act as a CC transcriptional repressor of auxin-responsive genes CC (PubMed:26716451). Regulates vegetative growth, lateral root CC formation and flower organ senescence, possibly partially by CC regulating gene expression of auxin and ethylene response factor CC (ERF) genes (PubMed:28167023). Plays a negative role in axillary CC shoot meristem formation (PubMed:27645097). CC {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, CC ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, CC ECO:0000269|PubMed:28167023}. CC -!- SUBUNIT: Homodimers and heterodimers. Interacts with ASR1. CC {ECO:0000269|PubMed:26959229}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000255|RuleBase:RU004561, CC ECO:0000255|SAAS:SAAS00552270, ECO:0000269|PubMed:26716451, CC ECO:0000269|PubMed:26959229}. CC -!- TISSUE SPECIFICITY: Expressed in root, leaf and flower CC (PubMed:26716451, PubMed:27645097, PubMed:28167023, CC PubMed:21735233). Expressed in flower buds about three days before CC opening including ovary, petal and sepal with the highest in CC stamen (PubMed:21735233). Expressed in stem (PubMed:26716451, CC PubMed:28167023, PubMed:21735233). Expressed in fruit CC (PubMed:26716451, PubMed:27645097, PubMed:28167023). Expressed in CC seeds (PubMed:27645097). {ECO:0000269|PubMed:21735233, CC ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:27645097, CC ECO:0000269|PubMed:28167023}. CC -!- DEVELOPMENTAL STAGE: Expression increases at the orange (Or) and CC red (R) fruit stages. Expression is increased with ethylene at CC mature green (MG) stage, but only after six days post-treatment. CC Expression is increased three days post-treatment with plant CC hormone abscisic acid (ABA) at the Or stage, but not at the MG or CC breaker (Br) stages. No change in expression level up to six days CC post-treatment with ABA at the MG fruit stage (PubMed:26959229). CC Expressed during floral development (PubMed:21735233, CC PubMed:28167023, PubMed:27645097). During bud-anthesis stages CC flowers exhibit dynamic expression pattern in sepal, stamen, ovary CC and petal (PubMed:28167023). Expressed during ovary development CC with the highest expression on the third day after the flower CC fully opened (PubMed:21735233). During seed germination, expressed CC in the cotyledon. Expressed strongly in the pollen grain. CC Expressed in the developing fruits, in which mainly expressed in CC the vascular tissues and seeds. During growth, strongly expressed CC in leaf, where mainly expressed in the trichome and in the root CC tip and lateral root formation sites. Expressed in the vascular CC tissue and the epicycle of the root. Also expressed in branch CC (PubMed:27645097). {ECO:0000269|PubMed:21735233, CC ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, CC ECO:0000269|PubMed:28167023}. CC -!- INDUCTION: By tomato fruit ripening. Expression in tomato fruits CC is up-regulated by exogenous application of ethylene and down- CC regulated by inhibition of ethylene receptors with 1- CC methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up- CC regulated by plant hormone abscisic acid (ABA) in tomato fruits CC (PubMed:26959229). Expression is not up-regulated by plant hormone CC auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin CC and gibberellic acid (GA), and down-regulated by ethylene in CC seedlings (PubMed:28167023). Down-regulated during decapitation- CC induced axillary shoot development and by excision of immature CC leaves. Down-regulation is inhibited by the application of auxin CC on the cut surface (PubMed:27645097). CC {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, CC ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. CC -!- DISRUPTION PHENOTYPE: Simultaneous RNAi-mediated silencing of both CC ARF2A and ARF2B results in severe defects in tomato fruit ripening CC process (PubMed:26959229, PubMed:26716451). Plants form triple CC cotyledons and have enhanced root branching. Tomatoes have reduced CC pigment accumulation, enhanced fruit firmness, low climacteric CC ethylene production and inability to ripen upon exogenous CC application of ethylene (PubMed:26716451). The fruits are either CC parthenocarpic or contain only a few seeds, and the time from CC anthesis to breaker (Br) developmental stage is significantly CC extended compared to wild type fruit (PubMed:26959229). Altered CC expression of ethylene biosynthesis, signaling and ethylene CC response factor (ERF) genes and genes involved in the carotenoid CC pathway and ripening-related cell wall metabolism. Up-regulates CC auxin-responsive genes (PubMed:26716451). Down-regulated CC expression levels of ripening regulators, including RIN, AP2a, CC NOR, TAGL1, ETR3, ERF1 and CNR at the red (R) fruit stage. CC Expression levels of hormones such as abscisates, cytokinins and CC salicyclic acid are altered, and levels of carotenoids phytoene, CC phytofluene and lycopene are reduced in red fruits. Gibberellic CC acid (GA) and auxin expression levels are unchanged. Compounds CC normally reduced upon ripening show higher levels than wild type CC fruit as a result of simultaneous silencing of ARF2A and ARF2B CC (PubMed:26959229). RNAi-mediated silencing of ARF2A results in CC increased frequency of polycotyledons and significantly increased CC lateral organ development. Lateral shoot emergence occurs at the CC first leaf node compared to eighth leaf node in wild type. An CC unusual meristem appears in the mature leaf and lateral shoot CC development appears below the position of the cotyledon nodes. CC Unusual lateral branches also appear in the stem, which is located CC far from the leaf node. Epiderm is split along the axis at the CC site of the unusual meristem. Abnormally enlarged interfascicular CC cambia and phloem. Altered auxin distribution, and expression of CC auxin transporter PIN genes and ectopic axillary shoot-related CC transcriptional factors (PubMed:27645097). CC {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, CC ECO:0000269|PubMed:27645097}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000255|RuleBase:RU004561, ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DQ340255; ABC69711.1; -; mRNA. DR EMBL; CM001066; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; NP_001233765.1; NM_001246836.2. DR UniGene; Les.20300; -. DR STRING; 4081.Solyc03g118290.2.1; -. DR EnsemblPlants; Solyc03g118290.2.1; Solyc03g118290.2.1; Solyc03g118290.2. DR GeneID; 778240; -. DR Gramene; Solyc03g118290.2.1; Solyc03g118290.2.1; Solyc03g118290.2. DR KEGG; sly:778240; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR OMA; HESAYTD; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000004994; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Auxin signaling pathway; Complete proteome; Developmental protein; KW DNA-binding; Fruit ripening; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 846 Auxin response factor 2A. FT /FTId=PRO_0000441018. FT DOMAIN 720 804 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 146 248 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 846 AA; 94014 MW; D432F0CC4D7B5793 CRC64; MAASEVSIQG YSEPSDGSRP VSETGRSSSG VGIVDADTAL YTELWRSCAG PLVTVPREGE LVYYFPQGHI EQVEASTNQV ADQQMPLYNL PSKILCRVVN VLLKAEPDTD EVYAQVTLMP EPNQDENAVK KEPMRPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSRQ PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTKT MFTVYYKPRT SPAEFIVPYD HYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPQRWLESKW RCLKVRWDEN SSIPRPDRVS PWKIEPALSP PALNVPPVAR PKRPRSSILP TSPDSSVLTR EGSSRATADH SQASGFPRVL QGQELSTFRG GFAEINETDL SEKPMIWQTS VNDEKNDIHS ASKRYLPDKW LPLGRPESSL TDLLSGFGSS HGFCLPSADQ AAFGARLVKQ QTQDQEKDFS LLGKPWSLLS SGLSLNLMDS GSKAPGIGGD TPYQMRGDAR YSGYGEFSVL PGHRVANQQG SWIMPQPVSP YMQLSSHSRE MMHKPSVVKQ PEAVKPKEGN YKLFGIPLTS NVCTDAVMMR KSSLIDPASD MNIGIHPHQS LATDSDQRSE QSKGSKVDDG VAANDHDKQF HTFHLAARDK DGKGHSSSTR SCTKVHKQGT ALGRSVDLAK FNNYDELIAE LDQLFDFNGE LKARSKSWLV VYTDDEGDMM LVGDDPWQEF CGMVRKIFIY TKEEVQRMNP GTLNSKGEDT SSVAEGSDAK EVKNLQLPSE SGQAES // ID ARFY_ORYSJ Reviewed; 899 AA. AC Q2QM84; A0A0P0YD34; Q8S980; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 24-JAN-2006, sequence version 1. DT 05-JUL-2017, entry version 84. DE RecName: Full=Auxin response factor 25; DE AltName: Full=OsARF6b; GN Name=ARF25; Synonyms=ARF6B; GN OrderedLocusNames=Os12g0613700, LOC_Os12g41950; ORFNames=OsJ_035418; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [7] RP NUCLEOTIDE SEQUENCE [MRNA] OF 20-899. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [8] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DP000011; ABA99400.1; -; Genomic_DNA. DR EMBL; AP008218; BAF30285.1; -; Genomic_DNA. DR EMBL; AP014968; BAT18068.1; -; Genomic_DNA. DR EMBL; CM000149; EAZ21209.1; -; Genomic_DNA. DR EMBL; AK121703; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AB071295; BAB85915.1; -; mRNA. DR RefSeq; XP_015619766.1; XM_015764280.1. DR UniGene; Os.22272; -. DR ProteinModelPortal; Q2QM84; -. DR SMR; Q2QM84; -. DR STRING; 39947.LOC_Os12g41950.1; -. DR PaxDb; Q2QM84; -. DR PRIDE; Q2QM84; -. DR EnsemblPlants; OS12T0613700-01; OS12T0613700-01; OS12G0613700. DR GeneID; 4352783; -. DR Gramene; OS12T0613700-01; OS12T0613700-01; OS12G0613700. DR KEGG; osa:4352783; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q2QM84; -. DR OMA; GSKQPTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000059680; Chromosome 12. DR ExpressionAtlas; Q2QM84; baseline and differential. DR Genevisible; Q2QM84; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 899 Auxin response factor 25. FT /FTId=PRO_0000299285. FT DOMAIN 766 850 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 132 234 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 493 561 Gln-rich. FT CONFLICT 168 168 P -> S (in Ref. 6; AK121703). FT {ECO:0000305}. FT CONFLICT 774 774 S -> L (in Ref. 6; AK121703). FT {ECO:0000305}. SQ SEQUENCE 899 AA; 99862 MW; 18B0C9281D9D9EB3 CRC64; MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRYG DPSKQHPATL QYQQTHNLNS GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE LQQQQRQHVL QEQSSQEMQQ QLPSSDHHVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG NSDPPLHLHN NFHNFSNQEA SNLLILPRSS QLMASDGWPS KRLTLESAVH PEAPSMHPKI EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASVAPLDY // ID Y1223_ORYSJ Reviewed; 358 AA. AC Q2QMT2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 2. DT 05-JUL-2017, entry version 72. DE RecName: Full=B3 domain-containing protein Os12g0592300; GN OrderedLocusNames=Os12g0592300, LOC_Os12g40120; ORFNames=OsJ_36713; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=ABA99159.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAF30191.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=EAZ21070.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DP000011; ABA99159.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP008218; BAF30191.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014968; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000149; EAZ21070.1; ALT_SEQ; Genomic_DNA. DR RefSeq; XP_015619600.1; XM_015764114.1. DR SMR; Q2QMT2; -. DR PaxDb; Q2QMT2; -. DR GeneID; 4352681; -. DR KEGG; osa:4352681; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; Q2QMT2; -. DR OrthoDB; EOG09360G07; -. DR Proteomes; UP000059680; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 358 B3 domain-containing protein FT Os12g0592300. FT /FTId=PRO_0000376994. FT DNA_BIND 25 122 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 350 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 41098 MW; 22AF14E42B0637D4 CRC64; MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL KAPSGETWRV SVEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT KTNPRKEPED PNSSRSHVKH EMIEEEKSDD DDEHADYEHA DYYYSRFANY LTGEEREEIF SLVSLQPGNP VFVTVLQAPQ IHRKGLLIVP SGFAADHLDS RSQEILLMRP NKKEKWYVKY YHASTTRGFN CQRWIKFIRE NRLREGYICI FELMKGARRV TMTVHVIGKV DDRFVLLG // ID Y1209_ORYSJ Reviewed; 334 AA. AC Q2QMT5; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 24-JAN-2006, sequence version 1. DT 05-JUL-2017, entry version 59. DE RecName: Full=B3 domain-containing protein LOC_Os12g40090; GN OrderedLocusNames=Os12g0591500, LOC_Os12g40090; ORFNames=OsJ_36712; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DP000011; ABA99156.1; -; Genomic_DNA. DR EMBL; AP008218; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AP014968; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000149; EAZ21069.1; -; Genomic_DNA. DR SMR; Q2QMT5; -. DR PaxDb; Q2QMT5; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR InParanoid; Q2QMT5; -. DR Proteomes; UP000059680; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 334 B3 domain-containing protein FT LOC_Os12g40090. FT /FTId=PRO_0000376992. FT DNA_BIND 5 102 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 326 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 37960 MW; 6A709FAE737D71AB CRC64; MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL KSPSGETWRV GVAKVADELI LKSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD ASGCEKVSCF FTGKKNSYMC KNFNSIGGQV AGQYLSSDSE DTSTPSVLIG SPHKASTSKK LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL QPGNPVFVVV LQTAHVRRRN ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN TTRGFNCHRW IKFIRENRLR EGNVCIFELM KGARRPTMTV HVIGKADNRF VLLG // ID Y1208_ORYSJ Reviewed; 490 AA. AC Q2QMT6; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 24-JAN-2006, sequence version 1. DT 15-MAR-2017, entry version 63. DE RecName: Full=B3 domain-containing protein LOC_Os12g40080; GN OrderedLocusNames=Os12g0591400, LOC_Os12g40080; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DP000011; ABA99155.1; -; Genomic_DNA. DR EMBL; AP008218; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AP014968; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR SMR; Q2QMT6; -. DR PaxDb; Q2QMT6; -. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR HOGENOM; HOG000085118; -. DR InParanoid; Q2QMT6; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000059680; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 490 B3 domain-containing protein FT LOC_Os12g40080. FT /FTId=PRO_0000376991. FT DNA_BIND 24 117 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 331 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 389 487 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 490 AA; 55900 MW; 396EBF273F32C070 CRC64; MEKSHRVCKN CVANHYWLHM DNHGKSFIKV MITDFKNGVT IPAKFARNFG GQMSGTVKLE TRNGKTYEVQ VAKELNNLVL RSGWERFASA YELEKGDILV FIYSGNSHFK VWIYDPSACE KGLPCIITEQ LPRVQQRSIS HNNHTQLKRN AKSAKLYVDS SGHSKETSEI NPANSPSWKP TERVPSSEEL DEPVDLANVQ KATKSFYSLP RMCNMTSAQK AEVDALEKRI KPQIPFYITV MDKASATDGL LAISKDYAVS YLLDKNETIK LCHSGRSMTW DISLDIDTDD QYALSTGWLD FIRNNHLQEG DICVFEASKN KRGVALIFHP LKQSHHPKPP GCVPSTKFPR HGVSKPNYIV SRFTTLSGQL KIKVEAKVQA IQSEIPIFVA VMRESFIRGR SRYMCFSAKY AAKYLPREKN KIMRLRLPNK SYKYKAVFKI NNKVHKLGGG WGKFVDDNKI KLGDICLFQL MKNKKKLMMM VHIIRKSEFC // ID Y1214_ORYSJ Reviewed; 661 AA. AC Q2QMT7; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 24-JAN-2006, sequence version 1. DT 12-APR-2017, entry version 59. DE RecName: Full=B3 domain-containing protein Os12g0591400; GN OrderedLocusNames=Os12g0591300, LOC_Os12g40070; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DP000011; ABA99154.1; -; Genomic_DNA. DR EMBL; AP008218; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AP014968; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR SMR; Q2QMT7; -. DR PaxDb; Q2QMT7; -. DR eggNOG; ENOG410JGKH; Eukaryota. DR eggNOG; ENOG410ZNRS; LUCA. DR HOGENOM; HOG000085118; -. DR InParanoid; Q2QMT7; -. DR Proteomes; UP000059680; Chromosome 12. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 661 B3 domain-containing protein FT Os12g0591400. FT /FTId=PRO_0000376993. FT DNA_BIND 2 95 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 290 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 437 535 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 562 658 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 75285 MW; 821D3FC2E3B3F6C6 CRC64; MGDQKRSFIN VMIGDFVAVP TKFANFIRGQ ISEVVKLEVP NGKTYDVQVA KEHNELVLRS GWGAFARDYE LKQCDILVFA YSGSSRFKVR IFNPSGCEKE LSCVMMNNTP CGHEGSMSYH DNHLQSPSES SSFFNISLPP HSPFQELSGV DSTSLLVSDP PNMQQFCLRC SWTNPKRLAK PSLAIASLSH QHLAFDKTRC MFILKIENDT LKTILKMFAK NVQGLISGVA KLEVPDGKTY DVEISKEHNE LVFRSGWEVF AIAYELEQGD ILAFGYSGNS HFKVQIFNPS NCEKELSCVV MNRSISDDNH RQSPRRERMN KPSTTCMDCI TNHYWLHMDD RERYFFKVMM SVSDIKDELA IPKKFAANVR GKIPEQVRLE VSDDVPSSED IKDPMSSGGL QKSKKSCYVL PMLYNMTSAQ ESEVLALEKK IQPQIPLYIT AMDKTSVASG SLVFCKDYAV RYLLDQNRTI KLCQSGGSKT WDISLDMDTD DLYALSTGWL DFFRCNLLQE GDICVFEASK SKRGVALTFH PFKESHCPKS SEYTLSTKSP TRRVPKRDYF ATNLTNLTDQ QERKCFSVKY ASKYLPHKDQ NMRLRLPETK YKCKAALHID TSTNLHKLLK GWGKFVNDNK LEIHDICLFQ LMKNKKKLTM TVHIIRKGEC S // ID ARFX_ORYSJ Reviewed; 841 AA. AC Q2QQX6; A0A0P0YA23; B7ED01; Q2QQX7; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 24-JAN-2006, sequence version 1. DT 05-JUL-2017, entry version 76. DE RecName: Full=Auxin response factor 24; GN Name=ARF24; OrderedLocusNames=Os12g0479400, LOC_Os12g29520; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q2QQX6-1; Sequence=Displayed; CC Name=2; CC IsoId=Q2QQX6-2; Sequence=VSP_027596; CC Note=May be due to competing acceptor splice site. No CC experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AK065254; Type=Frameshift; Positions=702; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DP000011; ABA98246.1; -; Genomic_DNA. DR EMBL; DP000011; ABA98247.1; -; Genomic_DNA. DR EMBL; AP008218; BAF29784.1; -; Genomic_DNA. DR EMBL; AP014968; BAT17132.1; -; Genomic_DNA. DR EMBL; AP014968; BAT17133.1; -; Genomic_DNA. DR EMBL; AK065254; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AK067061; BAG90248.1; -; mRNA. DR RefSeq; XP_015620411.1; XM_015764925.1. [Q2QQX6-1] DR RefSeq; XP_015620412.1; XM_015764926.1. [Q2QQX6-1] DR RefSeq; XP_015620413.1; XM_015764927.1. [Q2QQX6-2] DR UniGene; Os.18308; -. DR ProteinModelPortal; Q2QQX6; -. DR SMR; Q2QQX6; -. DR STRING; 39947.LOC_Os12g29520.1; -. DR PaxDb; Q2QQX6; -. DR PRIDE; Q2QQX6; -. DR EnsemblPlants; OS12T0479400-02; OS12T0479400-02; OS12G0479400. [Q2QQX6-1] DR GeneID; 4352211; -. DR Gramene; OS12T0479400-02; OS12T0479400-02; OS12G0479400. [Q2QQX6-1] DR KEGG; osa:4352211; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q2QQX6; -. DR OMA; FTCYDEL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000059680; Chromosome 12. DR ExpressionAtlas; Q2QQX6; baseline and differential. DR Genevisible; Q2QQX6; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 841 Auxin response factor 24. FT /FTId=PRO_0000299284. FT DOMAIN 713 797 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 148 250 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 17 25 Poly-Gly. FT VAR_SEQ 114 114 Missing (in isoform 2). FT {ECO:0000303|PubMed:12869764}. FT /FTId=VSP_027596. SQ SEQUENCE 841 AA; 92307 MW; 8BE980CE69F69E85 CRC64; MAAAATAAAS PVEGLTGGGG GGGGGVDGLF VELWRACAGP LVTVPAVGER VFYLPQGHIE QVEASTNQVA EQQGAPLYNL PWKIPCKVMN VELKAEPDTD EVYAQLTLLP EKQQDGNGSG NGNVSKDKVE EEEVVPPAAT ERPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QHPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG ELRVGVRRAM RQQANIPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPSEFVVP RDLYKESLKR NHSIGMRFKM TFEGEEAAEQ RFTGTIVGVG DSDPSGWADS KWRSLKVRWD EAASVPRPDR VSPWQIEPAN SPSPVNPLPA PRTKRARPNV LASSPDLSAV NKEVASKVMA NSQQNGLPRA FHSQENMNLR SRFGDSNELN TSQKLTMWSS GSNQEKNNVS VQRELGSQSW MQMRRPDGSS EILSGFQPLK DTRNPLSSFP SQISGNRSNT WNTINVHYPD QNANHNMYPG TWSLMPPNTG FGVNQQNYLM TPDITLPQRS LNAKFGGNGA FTSLRAHGID QRSSGWLGHI EPSSHIDDAS SSLIKPQPLV IDHNVQKAKG SSCMLFGISL DSPAKPELLI SPPSVAFDGK LQQDALEEDE CSDPSKTVKP LDGAQHDSAR EKHQSCPDGT KNIQSKQQNG SSRSCKKVHK QGIALGRSID LTKFTCYDEL IAELDQMFDF NGELNSSSKN WMVVYTDNEG DMMLVGDDPW NEFCNMVHKI FIYTREEVQK MNPGALNSRS EDSRSTSVER GLVGEGLQGG LSTPSLNSEN C // ID ARFW_ORYSJ Reviewed; 853 AA. AC Q2R3F5; Q0ISG4; Q8GST0; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-JUL-2006, sequence version 2. DT 05-JUL-2017, entry version 76. DE RecName: Full=Auxin response factor 23; DE AltName: Full=OsARF1; GN Name=ARF23; Synonyms=ARF1; GN OrderedLocusNames=Os11g0523800, LOC_Os11g32110; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), SUBCELLULAR LOCATION, AND RP INDUCTION. RX PubMed=12369618; DOI=10.1023/A:1019818110761; RA Waller F., Furuya M., Nick P.; RT "OsARF1, an auxin response factor from rice, is auxin-regulated and RT classifies as a primary auxin responsive gene."; RL Plant Mol. Biol. 50:415-425(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [6] RP INTERACTION WITH CRL1. RX PubMed=15829602; DOI=10.1105/tpc.105.030981; RA Inukai Y., Sakamoto T., Ueguchi-Tanaka M., Shibata Y., Gomi K., RA Umemura I., Hasegawa Y., Ashikari M., Kitano H., Matsuoka M.; RT "Crown rootless1, which is essential for crown root formation in rice, RT is a target of an AUXIN RESPONSE FACTOR in auxin signaling."; RL Plant Cell 17:1387-1396(2005). RN [7] RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers (By similarity). Interacts CC with CRL1. {ECO:0000250, ECO:0000269|PubMed:15829602}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:12369618}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; CC IsoId=Q2R3F5-1; Sequence=Displayed; CC Name=2; CC IsoId=Q2R3F5-2; Sequence=VSP_027595; CC Note=Derived from EST data. May be due to competing acceptor CC splice site. No experimental confirmation available.; CC Name=3; CC IsoId=Q2R3F5-3; Sequence=VSP_027594; CC Note=No experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- INDUCTION: By auxin under light or dark conditions and gravitropic CC stimulation of coleptile. {ECO:0000269|PubMed:12369618, CC ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AJ306306; CAC83756.1; -; mRNA. DR EMBL; DP000010; ABA93992.2; -; Genomic_DNA. DR EMBL; AP008217; BAF28351.1; -; Genomic_DNA. DR EMBL; AP014967; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; XP_015617186.1; XM_015761700.1. [Q2R3F5-1] DR RefSeq; XP_015617187.1; XM_015761701.1. [Q2R3F5-1] DR RefSeq; XP_015617188.1; XM_015761702.1. [Q2R3F5-2] DR UniGene; Os.10817; -. DR ProteinModelPortal; Q2R3F5; -. DR SMR; Q2R3F5; -. DR STRING; 39947.LOC_Os11g32110.1; -. DR PaxDb; Q2R3F5; -. DR GeneID; 4350610; -. DR KEGG; osa:4350610; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; Q2R3F5; -. DR Proteomes; UP000059680; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 853 Auxin response factor 23. FT /FTId=PRO_0000299283. FT DOMAIN 725 809 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 149 251 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 7 34 Gly-rich. FT VAR_SEQ 10 26 Missing (in isoform 3). FT {ECO:0000303|PubMed:12369618}. FT /FTId=VSP_027594. FT VAR_SEQ 23 23 Missing (in isoform 2). {ECO:0000305}. FT /FTId=VSP_027595. FT CONFLICT 510 510 C -> W (in Ref. 1; CAC83756). FT {ECO:0000305}. SQ SEQUENCE 853 AA; 93984 MW; 76A0E22C5E86BFA5 CRC64; MATAEVGGGG GEGDAAAAAV ARAGGGGGGG GGGGEDALFT ELWSACAGPL VTVPRVGEKV FYFPQGHIEQ VEASTNQVGE QRMQLYNLPW KILCEVMNVE LKAEPDTDEV YAQLTLLPES KQQEDNGSTE EEVPSAPAAG HVRPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGEN GELRVGVRRA MRQQTNVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV PYDRYMESLK QNYSIGMRFK MRFEGEEAPE QRFTGTIVGM GDSDPAGWPE SKWRSLKVRW DEASSIPRPE RVSPWQIEPA VSPPPVNPLP VPRTKRLRPN ATALPADSSA IAKEAATKVV VESEPNGTQR TFQTQENATP KSGFGNSSEL ESAQKSIMRP SGFDREKNNT PIQWKLGSDG RMQMSKPESY SEMLSGFQPP KDVQIPQGFC SLPEQITAGH SNFWHTVNAQ YQDQQSNHNM FPSSWSFMPP NTRLGLNKQN YSMIQEAGVL SQRPGNTKFG NGVYAALPGR GTEQYSGGWF GHMMPNSHMD DTQPRLIKPK PLVVAHGDVQ KAKGASCKLF GIHLDSPAKS EPLKSPSSVV YDGTPQTPGA TEWRRPDVTE VEKCSDPSKA MKPLDTPQPD SVPEKPSSQQ ASRNMSCKSQ GVSTRSCKKV HKQGIALGRS VDLTKFNGYE ELIAELDDMF DFNGELKGPK KEWMVVYTDN EGDMMLVGDD PWIEFCDMVH KIFIYTREEV QRMNPGTLNS RSEDSHANSM ERGSVGREMR GCLSTSSLNS ENC // ID Y1176_ORYSJ Reviewed; 406 AA. AC Q2R9D2; A0A0P0XZV8; Q53LR2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 11-JUL-2006, sequence version 1. DT 07-JUN-2017, entry version 72. DE RecName: Full=B3 domain-containing protein Os11g0197600; GN OrderedLocusNames=Os11g0197600, LOC_Os11g09160; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAX96729.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC139170; AAX96729.1; ALT_SEQ; Genomic_DNA. DR EMBL; DP000010; ABA91888.2; -; Genomic_DNA. DR EMBL; AP008217; BAF27794.1; -; Genomic_DNA. DR EMBL; AP014967; BAT13054.1; -; Genomic_DNA. DR EMBL; AK067571; BAG90478.1; -; mRNA. DR EMBL; AK101941; BAG95305.1; -; mRNA. DR RefSeq; XP_015615373.1; XM_015759887.1. DR UniGene; Os.52508; -. DR SMR; Q2R9D2; -. DR STRING; 39947.LOC_Os11g09160.1; -. DR PaxDb; Q2R9D2; -. DR PRIDE; Q2R9D2; -. DR EnsemblPlants; OS11T0197600-01; OS11T0197600-01; OS11G0197600. DR GeneID; 4349997; -. DR Gramene; OS11T0197600-01; OS11T0197600-01; OS11G0197600. DR KEGG; osa:4349997; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR InParanoid; Q2R9D2; -. DR OMA; CVFELVQ; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000059680; Chromosome 11. DR Genevisible; Q2R9D2; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 406 B3 domain-containing protein FT Os11g0197600. FT /FTId=PRO_0000376990. FT DNA_BIND 30 123 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 393 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 406 AA; 45776 MW; B87C0EECC8EFC9B8 CRC64; MVVREKQGGR MGKGKGKGKE KECDINCFGR SFFRVLLTLQ SLERMKIPSS FNQCLQNQPT GMVSLVDRSG NKWSAELTSD SEGFFFVHGW KEFVRDNSIQ CGQFLVFTYD KRSQFSVTVF EPSGIDKIST FSAHPSKNVI IKTESDEGGM VTAAITTEKM APALKENNGI TGKRTRDVDY LMEDRVVVFK KSSEANVCES SRRKRAGASA GKSKVTSTSH NSTRGSSCSS DEDNSSSKSP NPPFLMRFLS GEVSRRGRCV SKGQRQLTVI SQRRPVTEAE KDHALQRARE FKSKNPFAVQ IMMESYVYVG FFMNIPCEFV RECLPHTNKR ITLWDPQGKA WEVNYVYYSD RSVGSFSGGW GKFAVGNNLE KFDVCVFELV QKDNIKVHIY RVVPEITPHK LRSDPK // ID REM2_ARATH Reviewed; 487 AA. AC Q3E9T2; C0SVL0; Q9SB78; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUL-2008, sequence version 2. DT 05-JUL-2017, entry version 88. DE RecName: Full=B3 domain-containing protein REM2; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 2; GN Name=REM2; OrderedLocusNames=At4g31615; ORFNames=F28M20.2; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q3E9T2-1; Sequence=Displayed; CC Name=2; CC IsoId=Q3E9T2-2; Sequence=VSP_037987; CC Note=May be due to an intron retention. No experimental CC confirmation available.; CC -!- SEQUENCE CAUTION: CC Sequence=CAA19761.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g31620 has been split into 2 genes: At4g31615 and At4g31620.; Evidence={ECO:0000305}; CC Sequence=CAB79880.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g31620 has been split into 2 genes: At4g31615 and At4g31620.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL031004; CAA19761.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161579; CAB79880.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE85937.1; -; Genomic_DNA. DR EMBL; AB493713; BAH30551.1; -; mRNA. DR PIR; T05108; T05108. DR RefSeq; NP_680753.2; NM_148387.3. [Q3E9T2-1] DR UniGene; At.31732; -. DR ProteinModelPortal; Q3E9T2; -. DR SMR; Q3E9T2; -. DR STRING; 3702.AT4G31615.1; -. DR iPTMnet; Q3E9T2; -. DR PaxDb; Q3E9T2; -. DR EnsemblPlants; AT4G31615.1; AT4G31615.1; AT4G31615. [Q3E9T2-1] DR GeneID; 829289; -. DR Gramene; AT4G31615.1; AT4G31615.1; AT4G31615. [Q3E9T2-1] DR KEGG; ath:AT4G31615; -. DR Araport; AT4G31615; -. DR TAIR; locus:504955488; AT4G31615. DR eggNOG; ENOG410JX38; Eukaryota. DR eggNOG; ENOG41104C4; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; Q3E9T2; -. DR OMA; ERCCEID; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; Q3E9T2; -. DR PRO; PR:Q3E9T2; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q3E9T2; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Repeat; Transcription; Transcription regulation. FT CHAIN 1 487 B3 domain-containing protein REM2. FT /FTId=PRO_0000375096. FT DNA_BIND 11 104 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 247 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 274 371 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 477 487 EKVSEINKILK -> MI (in isoform 2). FT {ECO:0000303|Ref.3}. FT /FTId=VSP_037987. SQ SEQUENCE 487 AA; 55036 MW; 4608E0C71C51FBF4 CRC64; MDDPAISSPT NKHFFVIVLH GHKSSPMIPA EFFSTYVEGK NHQSTKLKLT SDAFDRTWEV KLNGRRFAGG WENFSTVHSL QDDDVVIFRE IGDMTFHVTA SGRSFCKLQY ISSDEDRADE DDAWNVYSDS KNIVSKKKPR TEAESSSKNY YLVAHVTPSN LSRDRLYLIK AFARSNGLNE RCCEIDLMNK HGKSWTLGLR YSTVNDQASI SGGWRDFCLV NGLEAGSFYR FKLVQNGERP LLRLCYDTIP EEDCYKGNRK VNLSESASMK QGKFLTMTFK PYMLKSGQLR LSRPFAIENE IKEAEDITLV DKNGGNWPSY VASGDGQGGK YYLAKGWRSF CAANRLKTGE TFTLEFVRGE GTTPMLKFCS KSKDKIEQVP FDEGGETQEE TETRVKKRAR VSAERGSSRR NQASNKPNAD PQNLQPGQPH CSISDQVQKV KQIIVDTLTG IKRIRSELER KGQKLEASIL EIDALGEKVS EINKILK // ID Q45EZ4_SOYBN Unreviewed; 351 AA. AC Q45EZ4; DT 13-SEP-2005, integrated into UniProtKB/TrEMBL. DT 13-SEP-2005, sequence version 1. DT 05-JUL-2017, entry version 88. DE SubName: Full=RAV-like DNA-binding protein {ECO:0000313|EMBL:AAZ66389.1}; GN Name=RAV {ECO:0000313|EMBL:AAZ66389.1}; GN Synonyms=LOC732601 {ECO:0000313|EnsemblPlants:GLYMA10G34760.1}; GN ORFNames=GLYMA_10G204400 {ECO:0000313|EMBL:KRH34761.1}; OS Glycine max (Soybean) (Glycine hispida). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Glycine; Soja. OX NCBI_TaxID=3847; RN [1] {ECO:0000313|EnsemblPlants:GLYMA10G34760.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G34760.1}; RX PubMed=16247559; DOI=10.1007/s11103-005-8882-0; RA Saski C., Lee S.-B., Daniell H., Wood T.C., Tomkins J., Kim H.-G., RA Jansen R.K.; RT "Complete chloroplast genome sequence of Glycine max and comparative RT analyses with other legume genomes."; RL Plant Mol. Biol. 59:309-322(2005). RN [2] {ECO:0000313|EMBL:AAZ66389.1} RP NUCLEOTIDE SEQUENCE. RA Zhao L., Li W.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:KRH34761.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH34761.1}; RX PubMed=20075913; DOI=10.1038/nature08670; RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., RA May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., RA Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., RA Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., RA Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., RA Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., RA Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., RA Jackson S.A.; RT "Genome sequence of the palaeopolyploid soybean."; RL Nature 463:178-183(2010). RN [4] {ECO:0000313|EnsemblPlants:GLYMA10G34760.1} RP IDENTIFICATION. RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:GLYMA10G34760.1}; RG EnsemblPlants; RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EMBL:KRH34761.1} RP NUCLEOTIDE SEQUENCE. RC TISSUE=Callus {ECO:0000313|EMBL:KRH34761.1}; RA Hoefler B.C., Straight P.D.; RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; DQ147914; AAZ66389.1; -; mRNA. DR EMBL; CM000843; KRH34761.1; -; Genomic_DNA. DR RefSeq; NP_001237600.1; NM_001250671.1. DR UniGene; Gma.26849; -. DR EnsemblPlants; GLYMA10G34760.1; GLYMA10G34760.1; GLYMA10G34760. DR GeneID; 732601; -. DR Gramene; GLYMA10G34760.1; GLYMA10G34760.1; GLYMA10G34760. DR KEGG; gmx:732601; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR KO; K09287; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000008827; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome {ECO:0000313|Proteomes:UP000008827}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608, ECO:0000313|EMBL:AAZ66389.1}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000008827}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 53 108 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 286 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 53 108 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 286 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 38379 MW; D51AB450F6E29BA7 CRC64; MDGGCVTDET TTSSDSLSVP PPSRVGSVAS AVVDPDGCCV SGEAESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDIAALRFRG PDAVTNFKPP AASDDAESEF LNSHSKFEIV DMLRKHTYDD ELQQSTRGGR RRLDADTASS GVFDAKAREQ LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL SGSGDESSPC VAGASAAKGM LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDAVQFFK STGPDRQLYI DCKARSGEVN NNAGGLFVPI GPVVEPVQMV RLFGVNLLKL PVPGSDGVGK RKEMELFAFE CCKKLKVIGA L // ID Y1160_ORYSJ Reviewed; 279 AA. AC Q53QI0; A0A0P0XYX5; Q53NE4; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 24-MAY-2005, sequence version 1. DT 05-JUL-2017, entry version 69. DE RecName: Full=B3 domain-containing protein Os11g0156000; GN OrderedLocusNames=Os11g0156000, LOC_Os11g05740; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16188032; DOI=10.1186/1741-7007-3-20; RG The rice chromosomes 11 and 12 sequencing consortia; RT "The sequence of rice chromosomes 11 and 12, rich in disease RT resistance genes and recent gene duplications."; RL BMC Biol. 3:20-20(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAX92717.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=AAX92951.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC112209; AAX92717.1; ALT_SEQ; Genomic_DNA. DR EMBL; AC112209; AAX92718.1; -; Genomic_DNA. DR EMBL; AC134048; AAX92951.1; ALT_SEQ; Genomic_DNA. DR EMBL; DP000010; ABA91538.2; -; Genomic_DNA. DR EMBL; AP008217; BAF27637.1; -; Genomic_DNA. DR EMBL; AP014967; BAT12756.1; -; Genomic_DNA. DR EMBL; AK070487; BAG91982.1; -; mRNA. DR RefSeq; XP_015615108.1; XM_015759622.1. DR UniGene; Os.53019; -. DR PaxDb; Q53QI0; -. DR EnsemblPlants; OS11T0156000-01; OS11T0156000-01; OS11G0156000. DR GeneID; 4349821; -. DR Gramene; OS11T0156000-01; OS11T0156000-01; OS11G0156000. DR KEGG; osa:4349821; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR InParanoid; Q53QI0; -. DR OMA; QHAGESQ; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000059680; Chromosome 11. DR ExpressionAtlas; Q53QI0; baseline and differential. DR Genevisible; Q53QI0; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 279 B3 domain-containing protein FT Os11g0156000. FT /FTId=PRO_0000376989. FT DNA_BIND 38 144 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 30969 MW; 9CCE1BA9FE0184D5 CRC64; MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD VVHFERVRGS FGVGDRLFIG CRRRGDAAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS TSGGGSYPTS PANSYAYRRA ADHDHGDMHH ADESPRDTDS PSFSAGSAPS RRLRLFGVNL DCGPEPEADT TAAATMYGYM HQQSSYAAMS AVPSYWGNS // ID Y2621_ARATH Reviewed; 291 AA. AC Q5BPT7; Q84RE7; Q84RE8; Q9XIG9; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 12-APR-2005, sequence version 1. DT 05-JUL-2017, entry version 74. DE RecName: Full=B3 domain-containing protein At2g16210; GN OrderedLocusNames=At2g16210; ORFNames=F7H1.23; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC STRAIN=cv. Columbia; RX PubMed=12481096; DOI=10.1104/pp.010207; RA Xiao Y.-L., Malik M., Whitelaw C.A., Town C.D.; RT "Cloning and sequencing of cDNAs for hypothetical genes from RT chromosome 2 of Arabidopsis."; RL Plant Physiol. 130:2118-2128(2002). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W., RA Redman J.C., Wu H.C., Utterback T., Town C.D.; RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q5BPT7-1; Sequence=Displayed; CC Name=2; CC IsoId=Q5BPT7-2; Sequence=VSP_037332, VSP_037333; CC Note=May be due to an intron retention. No experimental CC confirmation available.; CC -!- SEQUENCE CAUTION: CC Sequence=AAD26962.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007134; AAD26962.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC06473.1; -; Genomic_DNA. DR EMBL; CP002685; AEC06474.1; -; Genomic_DNA. DR EMBL; AY247810; AAO89204.1; -; mRNA. DR EMBL; AY247811; AAO89205.1; -; mRNA. DR EMBL; AY924741; AAX23816.1; -; mRNA. DR PIR; H84537; H84537. DR RefSeq; NP_179217.2; NM_127178.3. [Q5BPT7-1] DR RefSeq; NP_973471.1; NM_201742.1. [Q5BPT7-2] DR UniGene; At.40304; -. DR ProteinModelPortal; Q5BPT7; -. DR STRING; 3702.AT2G16210.1; -. DR iPTMnet; Q5BPT7; -. DR PaxDb; Q5BPT7; -. DR EnsemblPlants; AT2G16210.1; AT2G16210.1; AT2G16210. [Q5BPT7-1] DR GeneID; 816118; -. DR Gramene; AT2G16210.1; AT2G16210.1; AT2G16210. [Q5BPT7-1] DR KEGG; ath:AT2G16210; -. DR Araport; AT2G16210; -. DR TAIR; locus:2052991; AT2G16210. DR HOGENOM; HOG000131629; -. DR InParanoid; Q5BPT7; -. DR OMA; VKEYPLA; -. DR OrthoDB; EOG09360LIQ; -. DR PhylomeDB; Q5BPT7; -. DR PRO; PR:Q5BPT7; -. DR Proteomes; UP000006548; Chromosome 2. DR ExpressionAtlas; Q5BPT7; baseline and differential. DR Genevisible; Q5BPT7; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Repeat; Transcription; Transcription regulation. FT CHAIN 1 291 B3 domain-containing protein At2g16210. FT /FTId=PRO_0000375135. FT DNA_BIND 19 114 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 200 291 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 216 217 RI -> VR (in isoform 2). FT {ECO:0000303|PubMed:12481096}. FT /FTId=VSP_037332. FT VAR_SEQ 218 291 Missing (in isoform 2). FT {ECO:0000303|PubMed:12481096}. FT /FTId=VSP_037333. SQ SEQUENCE 291 AA; 33217 MW; 2789159E08087357 CRC64; MATNAGYLRC KEERKNESFF KVVQSINVSS ENKRALPHDF SRSFTDKELS RKMKIRAQWG NSWEVGISKN PRFYFMEKSG WEKFVRDNAL GNSELLTFTH KGKMHFTVNI FKLDGKEMMQ PPQSRSFFAS SSRIKTEQEE NDIKEEVVVS SNRGQTTAAE SKGRKLNLGK RAAKESQSSK RTEKVVRARS DYAGASSSTA AAFTILFKQG YLVFLRIPNS VSKDQVPDEK TVFKIHHPNG KKSWNVVYLE RFGAFSGGWR RVVKEYPLAV GDTCKFTFIK PKELLLVVSK P // ID VAL2_ARATH Reviewed; 780 AA. AC Q5CCK4; O49390; Q0WSC1; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 12-APR-2005, sequence version 1. DT 05-JUL-2017, entry version 90. DE RecName: Full=B3 domain-containing transcription repressor VAL2; DE AltName: Full=Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 1; DE AltName: Full=Protein VP1/ABI3-LIKE 2; GN Name=VAL2; Synonyms=HSL1; OrderedLocusNames=At4g32010; GN ORFNames=F10N7.180; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=15894743; DOI=10.1104/pp.104.057752; RA Tsukagoshi H., Saijo T., Shibata D., Morikami A., Nakamura K.; RT "Analysis of a sugar response mutant of Arabidopsis identified a novel RT B3 domain protein that functions as an active transcriptional RT repressor."; RL Plant Physiol. 138:675-685(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [5] RP FUNCTION. RX PubMed=17158584; DOI=10.1104/pp.106.092320; RA Suzuki M., Wang H.H.-Y., McCarty D.R.; RT "Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant RT embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes."; RL Plant Physiol. 143:902-911(2007). RN [6] RP FUNCTION. RX PubMed=17267611; DOI=10.1073/pnas.0607940104; RA Tsukagoshi H., Morikami A., Nakamura K.; RT "Two B3 domain transcriptional repressors prevent sugar-inducible RT expression of seed maturation genes in Arabidopsis seedlings."; RL Proc. Natl. Acad. Sci. U.S.A. 104:2543-2547(2007). RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Transcriptional repressor of gene expression involved in CC embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the CC sugar-inducible genes involved in the seed maturation program in CC seedlings. Plays an essential role in regulating the transition CC from seed maturation to seedling growth. Functionally redundant CC with VAL1/HSI2. {ECO:0000269|PubMed:17158584, CC ECO:0000269|PubMed:17267611}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q5CCK4-1; Sequence=Displayed; CC Name=2; CC IsoId=Q5CCK4-2; Sequence=VSP_037329; CC Note=May be due to a competing donor splice site. No CC experimental confirmation available.; CC -!- SEQUENCE CAUTION: CC Sequence=CAA16588.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB79919.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB206554; BAD90971.1; -; mRNA. DR EMBL; AL021636; CAA16588.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161580; CAB79919.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE85993.1; -; Genomic_DNA. DR EMBL; CP002687; ANM67961.1; -; Genomic_DNA. DR EMBL; AK228013; BAE99977.1; -; mRNA. DR PIR; T04644; T04644. DR RefSeq; NP_001329752.1; NM_001342124.1. [Q5CCK4-2] DR RefSeq; NP_194929.2; NM_119353.4. [Q5CCK4-1] DR UniGene; At.1885; -. DR ProteinModelPortal; Q5CCK4; -. DR SMR; Q5CCK4; -. DR BioGrid; 14618; 1. DR STRING; 3702.AT4G32010.1; -. DR PaxDb; Q5CCK4; -. DR EnsemblPlants; AT4G32010.1; AT4G32010.1; AT4G32010. [Q5CCK4-1] DR GeneID; 829332; -. DR Gramene; AT4G32010.1; AT4G32010.1; AT4G32010. [Q5CCK4-1] DR KEGG; ath:AT4G32010; -. DR Araport; AT4G32010; -. DR TAIR; locus:2116592; AT4G32010. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; Q5CCK4; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR PhylomeDB; Q5CCK4; -. DR PRO; PR:Q5CCK4; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q5CCK4; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Metal-binding; KW Nucleus; Reference proteome; Repressor; Transcription; KW Transcription regulation; Zinc; Zinc-finger. FT CHAIN 1 780 B3 domain-containing transcription FT repressor VAL2. FT /FTId=PRO_0000375118. FT DNA_BIND 286 387 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 515 565 CW-type. {ECO:0000255|PROSITE- FT ProRule:PRU00454}. FT VAR_SEQ 273 277 QYPHL -> H (in isoform 2). FT {ECO:0000303|Ref.4}. FT /FTId=VSP_037329. SQ SEQUENCE 780 AA; 86012 MW; 6CA5BC9A178E2B72 CRC64; MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGQYPHLSNS KIIPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISLPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNST ATQMFKGSSE PNLNMFSNSL NPGCGDINWS KLEKSEDMAK DNLFLQSSLT SARKRVRNIG TKSKRLLIDS VDVLELKITW EEAQELLRPP QSTKPSIFTL ENQDFEEYDE PPVFGKRTLF VSRQTGEQEQ WVQCDACGKW RQLPVDILLP PKWSCSDNLL DPGRSSCSAP DELSPREQDT LVRQSKEFKR RRLASSNEKL NQSQDASALN SLGNAGITTT GEQGEITVAA TTKHPRHRAG CSCIVCSQPP SGKGKHKPSC TCTVCEAVKR RFRTLMLRKR NKGEAGQASQ QAQSQSECRD ETEVESIPAV ELAAGENIDL NSDPGASRVS MMRLLQAAAF PLEAYLKQKA ISNTAGEQQS SDMVSTEHGS SSAAQETEKD TTNGAHDPVN // ID ARFD_ORYSJ Reviewed; 808 AA. AC Q5JK20; A0A0P0VCI4; Q8S982; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 15-FEB-2005, sequence version 1. DT 05-JUL-2017, entry version 80. DE RecName: Full=Auxin response factor 4; DE AltName: Full=OsARF2; GN Name=ARF4; Synonyms=ARF2; GN OrderedLocusNames=Os01g0927600, LOC_Os01g70270; GN ORFNames=OSJNBa0093F16.35; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] OF 18-808. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [7] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AK072309; Type=Erroneous termination; Positions=574; Note=Translated as Ser.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004332; BAD88200.1; -; Genomic_DNA. DR EMBL; AP008207; BAF07184.1; -; Genomic_DNA. DR EMBL; AP014957; BAS76004.1; -; Genomic_DNA. DR EMBL; AK072309; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AB071293; BAB85913.1; -; mRNA. DR RefSeq; XP_015650953.1; XM_015795467.1. DR UniGene; Os.26144; -. DR ProteinModelPortal; Q5JK20; -. DR SMR; Q5JK20; -. DR STRING; 39947.LOC_Os01g70270.1; -. DR PaxDb; Q5JK20; -. DR PRIDE; Q5JK20; -. DR EnsemblPlants; OS01T0927600-01; OS01T0927600-01; OS01G0927600. DR GeneID; 4326957; -. DR Gramene; OS01T0927600-01; OS01T0927600-01; OS01G0927600. DR KEGG; osa:4326957; -. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; Q5JK20; -. DR OMA; EQNSSSW; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q5JK20; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 808 Auxin response factor 4. FT /FTId=PRO_0000299257. FT DOMAIN 692 785 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 129 231 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 342 387 Pro-rich. SQ SEQUENCE 808 AA; 90855 MW; 8891BD0691F05BBB CRC64; MPPAAMAPPP PPQGSSTGDP LYDELWHACA GPLVTVPRVG DLVFYFPQGH IEQVEASMNQ VADSQMRLYD LPSKLLCRVL NVELKAEQDT DEVYAQVMLM PEPEQNEMAV EKTTPTSGPV QARPPVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHSMDWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSVGMRFR MRFEGEEAPE QRFTGTIIGS ENLDPVWPES SWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNAP PASPESPILT KEAATKVDTD PAQAQRSQNS TVLQGQEQMT LRSNLTESND SDVTAHKPMM WSPSPNAAKA HPLTFQQRPP MDNWMQLGRR ETDFKDVRSG SQSFGDSPGF FMQNFDEAPN RLTSFKNQFQ DQGSARHFSD PYYYVSPQPS LTVESSTQMH TDSKELHFWN GQSTVYGNSR DRPQNFRFEQ NSSSWLNQSF ARPEQPRVIR PHASIAPVEL EKTEGSGFKI FGFKVDTTNA PNNHLSSPMA ATHEPMLQTP SSLNQLQPVQ TDCIPEVSVS TAGTATENEK SGQQAQQSSK DVQSKTQVAS TRSCTKVHKQ GVALGRSVDL SKFSNYDELK AELDKMFEFD GELVSSNKNW QIVYTDNEGD MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSNAPRKD DSSENEKGHL PMPNKSDN // ID ARFC_ORYSJ Reviewed; 731 AA. AC Q5JMM1; A0A0P0V894; B7EKN0; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 15-FEB-2005, sequence version 1. DT 05-JUL-2017, entry version 74. DE RecName: Full=Auxin response factor 3; GN Name=ARF3; OrderedLocusNames=Os01g0753500, LOC_Os01g54990; GN ORFNames=P0435B05.36, P0503C12.8; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003249; BAD87193.1; -; Genomic_DNA. DR EMBL; AP003268; BAD87282.1; -; Genomic_DNA. DR EMBL; AP008207; BAF06188.1; -; Genomic_DNA. DR EMBL; AP014957; BAS74386.1; -; Genomic_DNA. DR EMBL; AK072330; BAG92927.1; -; mRNA. DR RefSeq; XP_015634503.1; XM_015779017.1. DR UniGene; Os.34249; -. DR ProteinModelPortal; Q5JMM1; -. DR SMR; Q5JMM1; -. DR STRING; 39947.LOC_Os01g54990.1; -. DR PaxDb; Q5JMM1; -. DR PRIDE; Q5JMM1; -. DR EnsemblPlants; OS01T0753500-01; OS01T0753500-01; OS01G0753500. DR GeneID; 4327014; -. DR Gramene; OS01T0753500-01; OS01T0753500-01; OS01G0753500. DR KEGG; osa:4327014; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q5JMM1; -. DR OMA; RTHRVTC; -. DR OrthoDB; EOG093606WB; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q5JMM1; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 731 Auxin response factor 3. FT /FTId=PRO_0000299256. FT DNA_BIND 191 293 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 731 AA; 79584 MW; FD1B7ED4971C36D7 CRC64; MASSASSSSS PSSRPPLMAL PSFYRPPWPS ERGGEQRATD CWAGSPAAGG GRARATAMGI DLNNTASGGE EDAPAPGPVC RDLWHACAGP VVSLPRRGSA VVYLPQGHLS AAGAGGGIRG EVAVALPPHV ACRVVDVELC ADAATDEVYA RLALRAEGEV FERNLHGGGI EREDDMEDGD EERKSRMLHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DHKQLRPSQE LVAKDLHGAK WRFRHIYRGQ PRRHLLTTGW SSFVNKKKLV SGDAVLFLRG DDGELRLGVR RATQLKNEAI FKAFSSESSK MRTLSAVADS LKHGSVFHIC YNPRATASEY VVPYWKFVKS FNHPVCIGMR FKFHFESEDV NERRSGMIAG VSEVDPIRWP GSKWRSLLVR WEDATDCNSQ NRVSPWEIEI VGGSISVAHS LSASSSKRTK LCPQGNLDVP ALYGNGRPDS VETEKFPRVL QGQELMGSRT HRATCSPQSI DITKSKSFDA WRFLTDTRSC MLGSSTSRLP VQYSGYTHQS VSFGESIGFP EVLQGQEISQ TVPPFQGMLP DACSAKSRYE LKNYVCTPAT MNGLSSANEG YCLSLSTVPP SPPSSLMLYQ TGVPQLELAS KNNDKSGNDS QPALRQHKLL SETSWDQFKI GKASTPGNAT KPGNGGREVD RTSCRLFGFS LTEKIIPTDK DGEKEVSYET DCQNPRMLDL FGYNCSTPGA LHALCAAPLG I // ID Y1237_ORYSJ Reviewed; 719 AA. AC Q5JNA1; A0A0P0V7M2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 15-FEB-2005, sequence version 1. DT 07-JUN-2017, entry version 69. DE RecName: Full=B3 domain-containing protein Os03g0120900; GN OrderedLocusNames=Os01g0723700, LOC_Os01g52540; ORFNames=P0022F10.18; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RG The rice full-length cDNA consortium; RT "Oryza sativa full length cDNA."; RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF06023.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003229; BAD87058.1; -; Genomic_DNA. DR EMBL; AP008207; BAF06023.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014957; BAS74112.1; -; Genomic_DNA. DR EMBL; AK243092; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015614209.1; XM_015758723.1. DR UniGene; Os.79254; -. DR ProteinModelPortal; Q5JNA1; -. DR SMR; Q5JNA1; -. DR PaxDb; Q5JNA1; -. DR EnsemblPlants; OS01T0723700-01; OS01T0723700-01; OS01G0723700. DR GeneID; 4324719; -. DR Gramene; OS01T0723700-01; OS01T0723700-01; OS01G0723700. DR KEGG; osa:4324719; -. DR eggNOG; ENOG410JVSD; Eukaryota. DR eggNOG; ENOG41105MW; LUCA. DR InParanoid; Q5JNA1; -. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q5JNA1; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 719 B3 domain-containing protein FT Os03g0120900. FT /FTId=PRO_0000378043. FT DNA_BIND 7 110 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 719 AA; 82661 MW; 18450CF9DE741ADE CRC64; MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYYSS PILESRKCSL EEPKLSNQPL QCDLTTEKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER SEERQPSPDS MIDQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETIY TSLELDYKKA TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH // ID Y5814_ORYSJ Reviewed; 279 AA. AC Q5KQI4; A0A0N7KKZ4; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 15-FEB-2005, sequence version 1. DT 05-JUL-2017, entry version 69. DE RecName: Full=B3 domain-containing protein Os05g0481400; GN OrderedLocusNames=Os05g0481400, LOC_Os05g40280; GN ORFNames=OSJNBa0095J22.6; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y; RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., RA Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.; RT "A fine physical map of the rice chromosome 5."; RL Mol. Genet. Genomics 274:337-345(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC137619; AAW56868.1; -; Genomic_DNA. DR EMBL; AP008211; BAF17774.1; -; Genomic_DNA. DR EMBL; AP014961; BAS94585.1; -; Genomic_DNA. DR EMBL; AK068705; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015639491.1; XM_015784005.1. DR UniGene; Os.87692; -. DR ProteinModelPortal; Q5KQI4; -. DR SMR; Q5KQI4; -. DR PaxDb; Q5KQI4; -. DR PRIDE; Q5KQI4; -. DR EnsemblPlants; OS05T0481400-01; OS05T0481400-01; OS05G0481400. DR GeneID; 4339125; -. DR Gramene; OS05T0481400-01; OS05T0481400-01; OS05G0481400. DR KEGG; osa:4339125; -. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; Q5KQI4; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000059680; Chromosome 5. DR Genevisible; Q5KQI4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 279 B3 domain-containing protein FT Os05g0481400. FT /FTId=PRO_0000376969. FT DNA_BIND 139 230 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 157 157 P -> R (in Ref. 5; AK068705). FT {ECO:0000305}. SQ SEQUENCE 279 AA; 31650 MW; 5E74223F0602E5FB CRC64; MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK FEVGATEVRR SSRARNSVSY KENFDELNSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA DEEAIGDKDT STEDAAEQDD SPNAEPLKGT KRRKLRGRR // ID Y1054_ORYSJ Reviewed; 673 AA. AC Q5N6V0; A0A0P0VBT1; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-FEB-2005, sequence version 1. DT 07-JUN-2017, entry version 84. DE RecName: Full=B3 domain-containing protein Os01g0905400; GN OrderedLocusNames=Os01g0905400, LOC_Os01g67830; GN ORFNames=OsJ_04461, OSJNOa108M02.5; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP006839; BAD82806.1; -; Genomic_DNA. DR EMBL; AP008207; BAF07042.1; -; Genomic_DNA. DR EMBL; AP014957; BAS75787.1; -; Genomic_DNA. DR EMBL; CM000138; EAZ14539.1; -; Genomic_DNA. DR EMBL; AK063530; BAG88754.1; -; mRNA. DR RefSeq; XP_015645658.1; XM_015790172.1. DR UniGene; Os.51723; -. DR ProteinModelPortal; Q5N6V0; -. DR SMR; Q5N6V0; -. DR STRING; 39947.LOC_Os01g67830.1; -. DR PaxDb; Q5N6V0; -. DR PRIDE; Q5N6V0; -. DR EnsemblPlants; OS01T0905400-01; OS01T0905400-01; OS01G0905400. DR GeneID; 4325025; -. DR Gramene; OS01T0905400-01; OS01T0905400-01; OS01G0905400. DR KEGG; osa:4325025; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; Q5N6V0; -. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q5N6V0; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 673 B3 domain-containing protein FT Os01g0905400. FT /FTId=PRO_0000378041. FT DNA_BIND 79 172 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 576 671 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 75403 MW; 618EFA268B16EA7F CRC64; MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC IDSGSEQRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVSNGR TPGDCFGVPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IGQGNTYPDI DAAPDDCKKD KDVLHSECNK VAQKAHSSVK QDITKDGPRQ IAAEIMSSDP KTCELTYVRK NSVQPGISSV SQWNNSKGQE SGGTKSCVVL AVAANSKKFC ITIPPPDQTW LELPRRLPVL PRTKKQARKI LILKDPSMRL WPVLYQCTPK FNGFIAGWAD ISRENNLREG DTCEFELCSN SELSFQVLVP NLQ // ID ARFA_ORYSJ Reviewed; 699 AA. AC Q5NB85; B7ETA0; Q8S975; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 01-FEB-2005, sequence version 1. DT 05-JUL-2017, entry version 77. DE RecName: Full=Auxin response factor 1; DE AltName: Full=OsARF16; GN Name=ARF1; Synonyms=ARF16; GN OrderedLocusNames=Os01g0236300, LOC_Os01g13520; ORFNames=P0708G02.26; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] OF 5-699. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [7] RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- INDUCTION: By auxin under light or dark conditions. CC {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP001539; BAD81271.1; -; Genomic_DNA. DR EMBL; AP008207; BAF04442.1; -; Genomic_DNA. DR EMBL; AP014957; BAS71229.1; -; Genomic_DNA. DR EMBL; AK102521; BAG95597.1; -; mRNA. DR EMBL; AB071300; BAB85920.1; -; mRNA. DR RefSeq; XP_015622434.1; XM_015766948.1. DR UniGene; Os.22269; -. DR ProteinModelPortal; Q5NB85; -. DR SMR; Q5NB85; -. DR STRING; 39947.LOC_Os01g13520.1; -. DR PaxDb; Q5NB85; -. DR EnsemblPlants; OS01T0236300-01; OS01T0236300-01; OS01G0236300. DR EnsemblPlants; OS01T0236300-02; OS01T0236300-02; OS01G0236300. DR GeneID; 4327785; -. DR Gramene; OS01T0236300-01; OS01T0236300-01; OS01G0236300. DR Gramene; OS01T0236300-02; OS01T0236300-02; OS01G0236300. DR KEGG; osa:4327785; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q5NB85; -. DR OMA; KMSFEGE; -. DR OrthoDB; EOG093603CW; -. DR Proteomes; UP000059680; Chromosome 1. DR ExpressionAtlas; Q5NB85; baseline and differential. DR Genevisible; Q5NB85; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 699 Auxin response factor 1. FT /FTId=PRO_0000299254. FT DOMAIN 595 684 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 122 224 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 699 AA; 77502 MW; E15605439208D679 CRC64; MSSQGAGGGV GDPELFAELW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ ENLPTLPDPP LPEQPRPVVH SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG QPRRHLLTTG WSTFVTSKKL ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PASVISSQSM HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RFKMSFEGED VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE KTGIGSSEPN CISGHQVVWP GEHPGYGAVS SSVCQNPLVL ESWLKDFNSS NKGVSPTLSE ISQKIFQVTS NEARIATWPA RSAYQAEEPT SKLSSNTAAC GYRTEEVAPN ASKVVEGKKE PAMFRLFGVD LMKCTSISTT TDDKSSVGAG EASAKGTGSH EDSGQLSAFS KVTKEHIAAD ESPQEIQSHQ NYTARTRIKV QMHGNAVGRA VDLANLDGYE QLMNELEEMF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE FCQMVRKIVL YPIEDEKKIE PHPKLLSSAN PEQDQKTGF // ID Y2531_ARATH Reviewed; 288 AA. AC Q5PNU4; O82163; Q8H0U7; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 04-JAN-2005, sequence version 1. DT 05-JUL-2017, entry version 74. DE RecName: Full=B3 domain-containing protein At2g35310; GN OrderedLocusNames=At2g35310; ORFNames=T4C15.2; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAC61807.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC004667; AAC61807.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC09092.1; -; Genomic_DNA. DR EMBL; BT002032; AAN72043.1; -; mRNA. DR EMBL; BT020353; AAV85708.1; -; mRNA. DR EMBL; BT021085; AAX12855.1; -; mRNA. DR PIR; A84767; A84767. DR RefSeq; NP_181074.2; NM_129083.4. DR UniGene; At.37682; -. DR ProteinModelPortal; Q5PNU4; -. DR STRING; 3702.AT2G35310.1; -. DR PaxDb; Q5PNU4; -. DR PRIDE; Q5PNU4; -. DR EnsemblPlants; AT2G35310.1; AT2G35310.1; AT2G35310. DR GeneID; 818098; -. DR Gramene; AT2G35310.1; AT2G35310.1; AT2G35310. DR KEGG; ath:AT2G35310; -. DR Araport; AT2G35310; -. DR TAIR; locus:2063434; AT2G35310. DR HOGENOM; HOG000131629; -. DR InParanoid; Q5PNU4; -. DR OMA; RWGSSWE; -. DR OrthoDB; EOG093615KU; -. DR PhylomeDB; Q5PNU4; -. DR PRO; PR:Q5PNU4; -. DR Proteomes; UP000006548; Chromosome 2. DR ExpressionAtlas; Q5PNU4; baseline and differential. DR Genevisible; Q5PNU4; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 288 B3 domain-containing protein At2g35310. FT /FTId=PRO_0000375133. FT DNA_BIND 19 114 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 196 288 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 118 118 M -> V (in Ref. 3; AAN72043). FT {ECO:0000305}. SQ SEQUENCE 288 AA; 33214 MW; 36CCA0AE3A5601B2 CRC64; MARNSDNDMC KEERKRESFF KVLQRVDISS ENMRALPYDF VRSFSNNELS RKMKIKARWG SSWEVEICKN PRFYFMEKSG WEKFVSDNAL GASEFLTFTH KGNMRFTVNI FMQDGKEMLQ PPQSMSFMAS SRPPKREQGI PSLATTIAAE SNGGGNYKRK LNFEKKKAEE SHNSKRTDKV FSVQRESAGA SSSSVAEFSM FIKKSYLIYM WFPKSVQSIH MPKQRTIFKI HHPNMKKSWN VVYVVSGTKS SFSAGWKGLA QEYPLAVGDT CKFSFIKQHE LILFVSKP // ID Y6078_ORYSJ Reviewed; 199 AA. AC Q5VS55; Q0DF88; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 2. DT 05-JUL-2017, entry version 62. DE RecName: Full=B3 domain-containing protein Os06g0107800; GN OrderedLocusNames=Os06g0107800, LOC_Os06g01860; GN ORFNames=P0514G12.9, P0644B06.53; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF18485.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP000616; BAD67682.1; -; Genomic_DNA. DR EMBL; AP001129; BAD67720.1; -; Genomic_DNA. DR EMBL; AP008212; BAF18485.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; XP_015642534.1; XM_015787048.1. DR UniGene; Os.36672; -. DR SMR; Q5VS55; -. DR STRING; 39947.LOC_Os06g01860.1; -. DR PaxDb; Q5VS55; -. DR GeneID; 4339875; -. DR KEGG; osa:4339875; -. DR eggNOG; ENOG410JVF6; Eukaryota. DR eggNOG; ENOG41105YT; LUCA. DR InParanoid; Q5VS55; -. DR OrthoDB; EOG09360P1C; -. DR Proteomes; UP000059680; Chromosome 6. DR Genevisible; Q5VS55; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 199 B3 domain-containing protein FT Os06g0107800. FT /FTId=PRO_0000376970. FT DNA_BIND 37 141 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 16 30 Poly-Gly. SQ SEQUENCE 199 AA; 21586 MW; D418CE50AC24ED49 CRC64; MATIVAWESR NLQLQGGGGG HGGGGGGGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE KYFPLGPAAR TSPAGTVLCF EDARGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL FGVDLQLRAD ASPALDLQL // ID ARFR_ORYSJ Reviewed; 700 AA. AC Q653H7; A0A0P0X0E7; B7EQA3; Q8S976; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 25-OCT-2004, sequence version 1. DT 05-JUL-2017, entry version 81. DE RecName: Full=Auxin response factor 18; DE AltName: Full=OsARF10; GN Name=ARF18; Synonyms=ARF10; GN OrderedLocusNames=Os06g0685700, LOC_Os06g47150; GN ORFNames=P0009H10.43, P0623A10.1; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB071299; BAB85919.1; -; mRNA. DR EMBL; AP003766; BAD45570.1; -; Genomic_DNA. DR EMBL; AP005395; BAD46040.1; -; Genomic_DNA. DR EMBL; AP008212; BAF20313.1; -; Genomic_DNA. DR EMBL; AP014962; BAS99192.1; -; Genomic_DNA. DR EMBL; AK100322; BAG94550.1; -; mRNA. DR RefSeq; XP_015644137.1; XM_015788651.1. DR RefSeq; XP_015644138.1; XM_015788652.1. DR UniGene; Os.22735; -. DR ProteinModelPortal; Q653H7; -. DR SMR; Q653H7; -. DR STRING; 39947.LOC_Os06g47150.1; -. DR PaxDb; Q653H7; -. DR PRIDE; Q653H7; -. DR EnsemblPlants; OS06T0685700-01; OS06T0685700-01; OS06G0685700. DR GeneID; 4341882; -. DR Gramene; OS06T0685700-01; OS06T0685700-01; OS06G0685700. DR KEGG; osa:4341882; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q653H7; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000059680; Chromosome 6. DR Genevisible; Q653H7; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 700 Auxin response factor 18. FT /FTId=PRO_0000299277. FT DOMAIN 614 697 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 128 230 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 241 250 Poly-Pro. FT CONFLICT 487 487 L -> F (in Ref. 1; BAB85919). FT {ECO:0000305}. SQ SEQUENCE 700 AA; 75882 MW; 28A9F5ECA7157611 CRC64; MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL PPPPPPPPTP AAGGNYGGFS MFLRGDDDGN KMAAAARGKV RARVRPEEVV EAANLAVSGQ PFEVVYYPRA STPEFCVKAG AVRAAMRTQW FAGMRFKMAF ETEDSSRISW FMGTVSAVQV ADPIRWPNSP WRLLQVSWDE PDLLQNVKRV SPWLVELVSN MPAIHLAPFS PPRKKLCVPL YPELPIDGQF PTPMFHGNPL ARGVGPMCYF PDGTPAGIQG ARHAQFGISL SDLHLNKLQS SLSPHGLHQL DHGMQPRIAA GLIIGHPAAR DDISCLLTIG SPQNNKKSDG KKAPAQLMLF GKPILTEQQI SLGDAASVDV KKSSSDGNAE NTVNKSNSDV SSPRSNQNGT TDNLSCGGVP LCQDNKVLDV GLETGHCKVF MQSEDVGRTL DLSVVGSYEE LYRRLADMFG IEKAELMSHV FYRDAAGALK HTGDEPFSEF TKTARRLNIL TDTSGDNLAR // ID ARFQ_ORYSJ Reviewed; 917 AA. AC Q653U3; A0A0P0WZV3; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 25-OCT-2004, sequence version 1. DT 05-JUL-2017, entry version 86. DE RecName: Full=Auxin response factor 17; GN Name=ARF17; OrderedLocusNames=Os06g0677800, LOC_Os06g46410; GN ORFNames=B1153E06.26, P0710B08.20; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [5] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AK103280; Type=Frameshift; Positions=24; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003728; BAD45527.1; -; Genomic_DNA. DR EMBL; AP004989; BAD45924.1; -; Genomic_DNA. DR EMBL; AP008212; BAF20274.1; -; Genomic_DNA. DR EMBL; AP014962; BAS99119.1; -; Genomic_DNA. DR EMBL; AK103280; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015643843.1; XM_015788357.1. DR UniGene; Os.98126; -. DR ProteinModelPortal; Q653U3; -. DR SMR; Q653U3; -. DR STRING; 39947.LOC_Os06g46410.1; -. DR PaxDb; Q653U3; -. DR PRIDE; Q653U3; -. DR EnsemblPlants; OS06T0677800-01; OS06T0677800-01; OS06G0677800. DR GeneID; 4341841; -. DR Gramene; OS06T0677800-01; OS06T0677800-01; OS06G0677800. DR KEGG; osa:4341841; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; Q653U3; -. DR OMA; AVEEHKC; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000059680; Chromosome 6. DR Genevisible; Q653U3; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 917 Auxin response factor 17. FT /FTId=PRO_0000299276. FT DOMAIN 786 870 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 134 236 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 440 603 Gln-rich. SQ SEQUENCE 917 AA; 101782 MW; C2878D1D0985D555 CRC64; MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL LMQGGIPSLQ GENDSTAIPY STSNFLSPSQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ ESRSLSTGIA SVGSVEF // ID Y6325_ORYSJ Reviewed; 393 AA. AC Q67VL7; A0A0P0WZ63; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 15-MAR-2017, entry version 74. DE RecName: Full=Putative B3 domain-containing protein Os06g0632500; GN OrderedLocusNames=Os06g0632500, LOC_Os06g42630; ORFNames=P0505A04.21; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004792; BAD37802.1; -; Genomic_DNA. DR EMBL; AP014962; BAS98739.1; -; Genomic_DNA. DR SMR; Q67VL7; -. DR PaxDb; Q67VL7; -. DR EnsemblPlants; OS06T0632500-00; OS06T0632500-00; OS06G0632500. DR Gramene; OS06T0632500-00; OS06T0632500-00; OS06G0632500. DR eggNOG; ENOG410JQPS; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR InParanoid; Q67VL7; -. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000059680; Chromosome 6. DR Genevisible; Q67VL7; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 393 Putative B3 domain-containing protein FT Os06g0632500. FT /FTId=PRO_0000376972. FT DNA_BIND 27 123 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 141 238 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 316 393 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 47 52 Poly-Glu. SQ SEQUENCE 393 AA; 43751 MW; 6B1F6906156296A0 CRC64; MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE EESGRRAAAV LVVGPLGKVW RVELRRSPAG DGEAWLGGGW SELAAAHGLG EGWGVVLRLE RRGVASLRVF DPGFCLARFC TPHAGMRTKD RPRFIKLLQQ EDLEKMKIPE KFVQQHLTET YTNNHQNAII VCPLGKFWRV ELQREQPDVL LRDGWAPFLA AHDLSEGNIL LFRYEGNMVF TVEVFLQNGC LKEYKTAALY LTDGTEGPSN APQQSAAKVG VSPVKRKRTR RIEGTCLEGP NRKSRASPIS VKVEPHKKHV SIVSQNSFTK EMTAYSIHSL LSVRGTFCSQ IGLLEACAIT LKISMKKKGS WRVAFKTANT YGYINGPGWR KFCLENELEV QRR // ID Y5475_ARATH Reviewed; 282 AA. AC Q680D9; Q8GZ90; Q8LBK4; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 11-OCT-2004, sequence version 1. DT 05-JUL-2017, entry version 68. DE RecName: Full=B3 domain-containing protein At5g25475; GN OrderedLocusNames=At5g25475; ORFNames=T14C9.1; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130714; DOI=10.1038/35048507; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., RA Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., RA Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., RA van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., RA Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., RA Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., RA Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., RA Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=11910074; DOI=10.1126/science.1071006; RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., RA Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., RA Shibata K., Shinagawa A., Shinozaki K.; RT "Functional annotation of a full-length Arabidopsis cDNA collection."; RL Science 296:141-145(2002). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., RA Feldmann K.A.; RT "Full-length cDNA from Arabidopsis thaliana."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=1; CC Comment=A number of isoforms are produced. According to EST CC sequences.; CC Name=1; CC IsoId=Q680D9-1; Sequence=Displayed; CC -!- SEQUENCE CAUTION: CC Sequence=AAO63296.1; Type=Frameshift; Positions=199; Evidence={ECO:0000305}; CC Sequence=BAC41820.1; Type=Frameshift; Positions=199; Evidence={ECO:0000305}; CC Sequence=BAD44214.1; Type=Frameshift; Positions=199; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CP002688; AED93449.1; -; Genomic_DNA. DR EMBL; CP002688; AED93450.1; -; Genomic_DNA. DR EMBL; CP002688; AED93451.1; -; Genomic_DNA. DR EMBL; AK117142; BAC41820.1; ALT_FRAME; mRNA. DR EMBL; BT005232; AAO63296.1; ALT_FRAME; mRNA. DR EMBL; AK175928; BAD43691.1; -; mRNA. DR EMBL; AK176451; BAD44214.1; ALT_FRAME; mRNA. DR EMBL; AY087156; AAM64714.1; -; mRNA. DR RefSeq; NP_001078620.1; NM_001085151.2. [Q680D9-1] DR RefSeq; NP_568473.1; NM_122458.6. [Q680D9-1] DR RefSeq; NP_851075.1; NM_180744.4. [Q680D9-1] DR UniGene; At.30907; -. DR ProteinModelPortal; Q680D9; -. DR BioGrid; 17897; 1. DR IntAct; Q680D9; 1. DR EnsemblPlants; AT5G25475.1; AT5G25475.1; AT5G25475. [Q680D9-1] DR EnsemblPlants; AT5G25475.2; AT5G25475.2; AT5G25475. [Q680D9-1] DR EnsemblPlants; AT5G25475.3; AT5G25475.3; AT5G25475. [Q680D9-1] DR GeneID; 832622; -. DR Gramene; AT5G25475.1; AT5G25475.1; AT5G25475. [Q680D9-1] DR Gramene; AT5G25475.2; AT5G25475.2; AT5G25475. [Q680D9-1] DR Gramene; AT5G25475.3; AT5G25475.3; AT5G25475. [Q680D9-1] DR KEGG; ath:AT5G25475; -. DR Araport; AT5G25475; -. DR HOGENOM; HOG000155371; -. DR InParanoid; Q680D9; -. DR PhylomeDB; Q680D9; -. DR PRO; PR:Q680D9; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q680D9; baseline and differential. DR Genevisible; Q680D9; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 282 B3 domain-containing protein At5g25475. FT /FTId=PRO_0000375155. FT DNA_BIND 20 114 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 154 154 G -> R (in Ref. 6; AAM64714). FT {ECO:0000305}. FT CONFLICT 165 165 G -> A (in Ref. 6; AAM64714). FT {ECO:0000305}. SQ SEQUENCE 282 AA; 32292 MW; 1AE9F9AE8E0E77E3 CRC64; MLPKNAIEKI QANVSKPCFW KSLSPGQTWK SKSMRIIPED FVRRTRGAFE HRVVFSVRWE NSWQLWLERE KNELFMIEED WNEFVDDNHL GPNDNLFIKH DETMNLEVQI FKNNGVEIID VPLGVEPETE PFHPTPKKPH KETTPASSFA SGSGCSANGG TNGRGKQRSS DVKNPERYLL NPENPYFVQA VTKRNDVLYV SRPVVQSYRL KFGPVKSTIT YLLPGEKKEE GENRIYNGKP CFSGWSVLCR RHNLNIGDSV VCELERSGGV VTAVRVHFVK KD // ID Y6944_ORYSJ Reviewed; 237 AA. AC Q69V36; A0A0P0WTZ7; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 13-SEP-2004, sequence version 1. DT 15-MAR-2017, entry version 67. DE RecName: Full=B3 domain-containing protein Os06g0194400; GN OrderedLocusNames=Os06g0194400, LOC_Os06g09420; GN ORFNames=P0648E08.15, P0698A06.41; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003514; BAD35285.1; -; Genomic_DNA. DR EMBL; AP004280; BAD35642.1; -; Genomic_DNA. DR EMBL; AP008212; BAF18960.1; -; Genomic_DNA. DR EMBL; AP014962; BAS96602.1; -; Genomic_DNA. DR EMBL; AK102980; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015642147.1; XM_015786661.1. DR UniGene; Os.49655; -. DR SMR; Q69V36; -. DR STRING; 39947.LOC_Os06g09420.1; -. DR PaxDb; Q69V36; -. DR EnsemblPlants; OS06T0194400-01; OS06T0194400-01; OS06G0194400. DR GeneID; 4340385; -. DR Gramene; OS06T0194400-01; OS06T0194400-01; OS06G0194400. DR KEGG; osa:4340385; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; Q69V36; -. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000059680; Chromosome 6. DR Genevisible; Q69V36; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 237 B3 domain-containing protein FT Os06g0194400. FT /FTId=PRO_0000376973. FT DNA_BIND 139 230 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 89 89 F -> L (in Ref. 4; AK102980). FT {ECO:0000305}. SQ SEQUENCE 237 AA; 27559 MW; 304C06AF72941C40 CRC64; MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESASKPSP VKQRKRKARA LPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRT KFKVYIIRAS SYYETDD // ID Y3982_ORYSJ Reviewed; 536 AA. AC Q6AV21; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 13-SEP-2004, sequence version 1. DT 15-MAR-2017, entry version 89. DE RecName: Full=B3 domain-containing protein Os03g0619800; GN OrderedLocusNames=Os03g0619800, Os03g0619825, LOC_Os03g42240; GN ORFNames=OsJ_11753, OSJNBa0063J18.21; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC107206; AAT77042.1; -; Genomic_DNA. DR EMBL; DP000009; ABF97660.1; -; Genomic_DNA. DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000140; EAZ27806.1; -; Genomic_DNA. DR RefSeq; XP_015629380.1; XM_015773894.1. DR RefSeq; XP_015629381.1; XM_015773895.1. DR RefSeq; XP_015629382.1; XM_015773896.1. DR SMR; Q6AV21; -. DR PaxDb; Q6AV21; -. DR GeneID; 9267568; -. DR KEGG; osa:9267568; -. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR HOGENOM; HOG000240246; -. DR InParanoid; Q6AV21; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 536 B3 domain-containing protein FT Os03g0619800. FT /FTId=PRO_0000378055. FT DNA_BIND 26 119 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 330 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 529 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 536 AA; 60703 MW; A17799FBEFF8426D CRC64; MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVTHI QDIQPEITVF VAVMKKCNLQ SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD NCLQEEDICL FVPTKGGRNF AFTVHLLQAE VTHSRDGTDV HKIGSSQNKR NSKMASQVHI KEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEVHIISNLQ RYPEVE // ID Y3196_ORYSJ Reviewed; 536 AA. AC Q6AV22; A0A0N7KHN3; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 13-SEP-2004, sequence version 1. DT 15-MAR-2017, entry version 72. DE RecName: Full=B3 domain-containing protein Os03g0619600; GN OrderedLocusNames=Os03g0619600, LOC_Os03g42230; GN ORFNames=OsJ_11751, OSJNBa0063J18.20; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC107206; AAT77040.1; -; Genomic_DNA. DR EMBL; DP000009; ABF97659.1; -; Genomic_DNA. DR EMBL; AP008209; BAF12588.1; -; Genomic_DNA. DR EMBL; AP014959; BAS85297.1; -; Genomic_DNA. DR EMBL; CM000140; EEE59506.1; -; Genomic_DNA. DR EMBL; AK119399; BAG99637.1; -; mRNA. DR RefSeq; XP_015633049.1; XM_015777563.1. DR RefSeq; XP_015633050.1; XM_015777564.1. DR UniGene; Os.49934; -. DR UniGene; Os.89559; -. DR SMR; Q6AV22; -. DR PaxDb; Q6AV22; -. DR EnsemblPlants; OS03T0619600-01; OS03T0619600-01; OS03G0619600. DR GeneID; 4333464; -. DR Gramene; OS03T0619600-01; OS03T0619600-01; OS03G0619600. DR KEGG; osa:4333464; -. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR HOGENOM; HOG000240246; -. DR InParanoid; Q6AV22; -. DR OMA; CDDTAES; -. DR OrthoDB; EOG0936072D; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q6AV22; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 536 B3 domain-containing protein FT Os03g0619600. FT /FTId=PRO_0000378047. FT DNA_BIND 26 119 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 335 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 435 529 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 536 AA; 61158 MW; 164246CF74413531 CRC64; MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRCVENSR FEVLIFDSDD CEKVFSCAGI RNTCKSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRRK TANLASSSED SGEDSPSEHE SVESGDLETS QEPYVLSRRS YLSEFQKEKV DALIQEIQPE TTAFVAIMRK SNVQLPTPFL VISFCYAEVH FPHKSVTVTL QRPCKSKKWH PRFYKRKDAR MNILRGSWVE FVKDNRVQEQ DICVFVPTKD ARRNFTFTVH LLRVAAAYSW GGTGVDRAGS SLGRTDVKSA SEISIKEEPI DQEENVSSRN RNGVSDESEE DEDSEGPAHP PYIVPCKSHL SRLQKKIVEE KVRSFQSKFP VYVAIMKKSN VERSASRCQL ELGARFAAAV HLPDRRQTVV LQRRGERWAT VMQIRSGTRR LLISGWHRFV RDNRLRVGDI CLFEFKTHER WRLTMAVHAI FREQCC // ID Y2835_ORYSJ Reviewed; 412 AA. AC Q6EU30; A0A0N7KFW0; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-AUG-2004, sequence version 1. DT 05-JUL-2017, entry version 75. DE RecName: Full=B3 domain-containing protein Os02g0683500; GN OrderedLocusNames=Os02g0683500, LOC_Os02g45850; GN ORFNames=OJ1123_G04.23; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004178; BAD27840.1; -; Genomic_DNA. DR EMBL; AP008208; BAF09668.1; -; Genomic_DNA. DR EMBL; AP014958; BAS80313.1; -; Genomic_DNA. DR EMBL; AK109908; BAG98956.1; -; mRNA. DR RefSeq; XP_015624169.1; XM_015768683.1. DR UniGene; Os.56351; -. DR SMR; Q6EU30; -. DR PaxDb; Q6EU30; -. DR PRIDE; Q6EU30; -. DR EnsemblPlants; OS02T0683500-01; OS02T0683500-01; OS02G0683500. DR GeneID; 4330337; -. DR Gramene; OS02T0683500-01; OS02T0683500-01; OS02G0683500. DR KEGG; osa:4330337; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q6EU30; -. DR OMA; TSHYAPW; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q6EU30; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 412 B3 domain-containing protein FT Os02g0683500. FT /FTId=PRO_0000376949. FT DNA_BIND 96 200 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 76 85 Poly-Gly. FT COMPBIAS 392 400 Poly-Ser. SQ SEQUENCE 412 AA; 43948 MW; 877D908D557E0ADE CRC64; MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS GSSTPFRSDD GAGASGSGGG GGGGGEAEVV EKEHMFDKVV TPSDVGKLNR LVIPKQYAEK YFPLDAAANE KGLLLNFEDR AGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KRLDAGDTVS FSRGIGDEAA RHRLFIDWKR RADTRDPLRL PRGLPLPMPL TSHYAPWGIG GGGGFFVQPS PPATLYEHRL RQGLDFRAFN PAAAMGRQVL LFGSARIPPQ APLLARAPSP LHHHYTLQPS GDGVRAAGSP VVLDSVPVIE SPTTAAKRVR LFGVNLDNPH AGGGGGAAAG ESSNHGNALS LQTPAWMRRD PTLRLLELPP HHHHGAESSA ASSPSSSSSS KRDAHSALDL DL // ID ARFF_ORYSJ Reviewed; 908 AA. AC Q6H6V4; A0A0P0VF46; B7EI38; Q8S981; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 19-JUL-2004, sequence version 1. DT 05-JUL-2017, entry version 88. DE RecName: Full=Auxin response factor 6; DE AltName: Full=OsARF6a; GN Name=ARF6; Synonyms=ARF6A; GN OrderedLocusNames=Os02g0164900, LOC_Os02g06910; GN ORFNames=OJ1661_C12.26, OsJ_005343, OSJNBa0023I17.9; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] OF 22-417. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [7] RP PROTEIN SEQUENCE [LARGE SCALE ANALYSIS] OF 94-100, AND IDENTIFICATION RP BY MASS SPECTROMETRY. RC STRAIN=cv. Nipponbare; RX PubMed=16758443; DOI=10.1002/pmic.200600043; RA Nozu Y., Tsugita A., Kamijo K.; RT "Proteomic analysis of rice leaf, stem and root tissues during growth RT course."; RL Proteomics 6:3665-3670(2006). RN [8] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004093; BAD25169.1; -; Genomic_DNA. DR EMBL; AP004863; BAD25545.1; -; Genomic_DNA. DR EMBL; AP008208; BAF07907.1; -; Genomic_DNA. DR EMBL; AP014958; BAS77143.1; -; Genomic_DNA. DR EMBL; CM000139; EAZ21860.1; -; Genomic_DNA. DR EMBL; AK070569; BAG92035.1; -; mRNA. DR EMBL; AB071294; BAB85914.1; -; mRNA. DR RefSeq; XP_015625706.1; XM_015770220.1. DR UniGene; Os.25597; -. DR ProteinModelPortal; Q6H6V4; -. DR SMR; Q6H6V4; -. DR STRING; 39947.LOC_Os02g06910.1; -. DR PaxDb; Q6H6V4; -. DR EnsemblPlants; OS02T0164900-01; OS02T0164900-01; OS02G0164900. DR EnsemblPlants; OS02T0164900-02; OS02T0164900-02; OS02G0164900. DR GeneID; 4328406; -. DR Gramene; OS02T0164900-01; OS02T0164900-01; OS02G0164900. DR Gramene; OS02T0164900-02; OS02T0164900-02; OS02G0164900. DR KEGG; osa:4328406; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR InParanoid; Q6H6V4; -. DR OMA; DPVRWTN; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q6H6V4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Auxin signaling pathway; Complete proteome; Direct protein sequencing; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 908 Auxin response factor 6. FT /FTId=PRO_0000299260. FT DOMAIN 777 861 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 134 236 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 454 592 Gln-rich. SQ SEQUENCE 908 AA; 100847 MW; 581072770ED932C3 CRC64; MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWMNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLMWLRDSQ NTGFQSLNFG GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AALQNTTKQV SPAMLQFQQP QNIVGRSSLL SSQILQQAQP QFQQMYHQNI NGNSIQGHSQ PEYLQQPLQH CQSFNEQKPQ LQPQQQQQES HQQQPQHQQM QQQKHLSNFQ TVPNALSVFS QLSSTPQSTP STLQTVSPFS QQHNFPDTNI SCLSPSNVSS MHDTLRSFPS EAASDLPGVP RITPVPVSDP WSSKRVAVES TITSRPHDIS SQIENFDLTP SSIPQNSTLA PLPGRECLVD QDGSSDPQNH FLFGVNIDSQ SLLMQDGIPS LHNENSSSTI PYSTSNFLSP SQDDYPLSQT LTTPGCLDES GYVPCSDNAD QVKRPHATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR QESRSLSTGI ASVGSVEF // ID ARFH_ORYSJ Reviewed; 681 AA. AC Q6K223; A0A0P0VLW1; B7FA46; Q0DZD6; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 05-JUL-2017, entry version 83. DE RecName: Full=Auxin response factor 8; GN Name=ARF8; OrderedLocusNames=Os02g0628600, LOC_Os02g41800; GN ORFNames=B1469H02.12, OsJ_07601; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RG The rice full-length cDNA consortium; RT "Oryza sativa full length cDNA."; RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases. RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF09402.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP006168; BAD23727.1; -; Genomic_DNA. DR EMBL; AP008208; BAF09402.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014958; BAS79879.1; -; Genomic_DNA. DR EMBL; CM000139; EEE57410.1; -; Genomic_DNA. DR EMBL; AK243230; BAH01494.1; -; mRNA. DR RefSeq; XP_015622752.1; XM_015767266.1. DR UniGene; Os.58906; -. DR ProteinModelPortal; Q6K223; -. DR SMR; Q6K223; -. DR STRING; 39947.LOC_Os02g41800.1; -. DR iPTMnet; Q6K223; -. DR PaxDb; Q6K223; -. DR EnsemblPlants; OS02T0628600-01; OS02T0628600-01; OS02G0628600. DR GeneID; 4330045; -. DR Gramene; OS02T0628600-01; OS02T0628600-01; OS02G0628600. DR KEGG; osa:4330045; -. DR eggNOG; ENOG410JWYA; Eukaryota. DR eggNOG; ENOG41104GX; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q6K223; -. DR OMA; ERCVDRQ; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q6K223; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 681 Auxin response factor 8. FT /FTId=PRO_0000299262. FT DOMAIN 595 675 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 120 222 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 421 430 His-rich. SQ SEQUENCE 681 AA; 73843 MW; C022D081517BF237 CRC64; MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS AARVPALVPC RVASVRYMAD PDTDEVFARI RLVPLRAAED GDVEEDGAAA GEEHEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW DQYGGLMRGN ASPCAAAKGR GKVRAEDLVE AARLANGGQP FEVVYYPRAS TPEFCVRAAA VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVASVQVA DPIRWPQSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAINLSSFSP PRKKPRILAY PEFPFEGQLL NPAFPPNPLA HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV GPTSIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS PAATGNSSLN WNTEKGASEG SGSGVIQNSP TDNTSSERLQ WFRENSTVSE LGLEPGQCKV FIESDTVGRN LDLSSLASFE QLYGRLSEMF CIDSAELRSR VLYRGATGEV RHAGDEPFSE FIKLARRLTI LTDAGSDNLG S // ID Y2559_ORYSJ Reviewed; 272 AA. AC Q6K3B1; A0A0P0VIM5; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 15-FEB-2017, entry version 59. DE RecName: Full=Putative B3 domain-containing protein Os02g0455900; GN OrderedLocusNames=Os02g0455900, LOC_Os02g25830; GN ORFNames=OSJNBa0008C07.36, OSJNBa0063K04.12; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005608; BAD19927.1; -; Genomic_DNA. DR EMBL; AP005696; BAD19990.1; -; Genomic_DNA. DR EMBL; AP014958; BAS78523.1; -; Genomic_DNA. DR RefSeq; XP_015624416.1; XM_015768930.1. DR ProteinModelPortal; Q6K3B1; -. DR PaxDb; Q6K3B1; -. DR EnsemblPlants; OS02T0455900-00; OS02T0455900-00; OS02G0455900. DR GeneID; 107275417; -. DR Gramene; OS02T0455900-00; OS02T0455900-00; OS02G0455900. DR KEGG; osa:107275417; -. DR HOGENOM; HOG000239050; -. DR OMA; PFSGHAT; -. DR OrthoDB; EOG09360KAP; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q6K3B1; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 272 Putative B3 domain-containing protein FT Os02g0455900. FT /FTId=PRO_0000376947. FT DNA_BIND 30 134 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 29869 MW; ACEF284D8833D61E CRC64; MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS TACGRFFICC RCTCMSFLSL PTTSHRIHGS SVLPQPRAAQ EAHHPFSGHA TLCLGNKASD HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP // ID Y2558_ORYSJ Reviewed; 267 AA. AC Q6K3B2; C7IYQ8; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 15-FEB-2017, entry version 64. DE RecName: Full=B3 domain-containing protein Os02g0455800; GN OrderedLocusNames=Os02g0455800, LOC_Os02g25820; GN ORFNames=OsJ_06608, OSJNBa0008C07.35, OSJNBa0063K04.11; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RG The rice full-length cDNA consortium; RT "Oryza sativa full length cDNA."; RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005608; BAD19926.1; -; Genomic_DNA. DR EMBL; AP005696; BAD19989.1; -; Genomic_DNA. DR EMBL; AP008208; BAH91671.1; -; Genomic_DNA. DR EMBL; AP014958; BAS78522.1; -; Genomic_DNA. DR EMBL; CM000139; EAZ22918.1; -; Genomic_DNA. DR EMBL; AK242688; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015625111.1; XM_015769625.1. DR UniGene; Os.70985; -. DR ProteinModelPortal; Q6K3B2; -. DR SMR; Q6K3B2; -. DR PaxDb; Q6K3B2; -. DR EnsemblPlants; OS02T0455800-01; OS02T0455800-01; OS02G0455800. DR GeneID; 9271162; -. DR Gramene; OS02T0455800-01; OS02T0455800-01; OS02G0455800. DR KEGG; osa:9271162; -. DR HOGENOM; HOG000239050; -. DR OMA; KRRTMKH; -. DR OrthoDB; EOG09360IMJ; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q6K3B2; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 267 B3 domain-containing protein FT Os02g0455800. FT /FTId=PRO_0000376946. FT DNA_BIND 30 131 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 206 208 SRR -> ARP (in Ref. 5; AK242688). FT {ECO:0000305}. SQ SEQUENCE 267 AA; 29360 MW; 873B06EC6D414CE7 CRC64; MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC GRLFICCRLG THATFASSST LHHGFSMPPP PARPLVGLQS GMLARDVPSL GQARLHDGNQ DGGGAPSRHV PSSGRRVEAQ LSRVSSRRQR RTMKHSIPEP TIETPPILES MFLIAAPPAV KCLRLFGVNI YVLPVSSSGQ PKQESSP // ID Y2982_ORYSJ Reviewed; 1048 AA. AC Q6K5K2; A0A0N7KFL7; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 07-JUN-2017, entry version 77. DE RecName: Full=B3 domain-containing protein Os02g0598200; GN OrderedLocusNames=Os02g0598200, LOC_Os02g38470; GN ORFNames=OJ1212_D02.14; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005384; BAD22126.1; -; Genomic_DNA. DR EMBL; AP008208; BAF09244.1; -; Genomic_DNA. DR EMBL; AP014958; BAS79569.1; -; Genomic_DNA. DR EMBL; AK121990; BAH00744.1; -; mRNA. DR RefSeq; XP_015624189.1; XM_015768703.1. DR RefSeq; XP_015624190.1; XM_015768704.1. DR UniGene; Os.50593; -. DR ProteinModelPortal; Q6K5K2; -. DR STRING; 39947.LOC_Os02g38470.1; -. DR PaxDb; Q6K5K2; -. DR PRIDE; Q6K5K2; -. DR EnsemblPlants; OS02T0598200-02; OS02T0598200-02; OS02G0598200. DR GeneID; 4329874; -. DR Gramene; OS02T0598200-02; OS02T0598200-02; OS02G0598200. DR KEGG; osa:4329874; -. DR eggNOG; ENOG410J4NM; Eukaryota. DR eggNOG; ENOG410YW9B; LUCA. DR InParanoid; Q6K5K2; -. DR OMA; RHDMKKN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000059680; Chromosome 2. DR ExpressionAtlas; Q6K5K2; baseline and differential. DR Genevisible; Q6K5K2; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 1048 B3 domain-containing protein FT Os02g0598200. FT /FTId=PRO_0000378044. FT DNA_BIND 375 468 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 953 1048 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 73 373 Lys-rich. SQ SEQUENCE 1048 AA; 118379 MW; 740C907971822150 CRC64; MDGAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK YSHHDMKNNL RNDANEEKRK SSDDMRDGDF EEKKKCSRHD MKKNLRNDAN EEKRKSSDDM RDGDDEEKKC SRQDMKKNLR NDADEEKRKS SDDMRDGDDE EKKKRSRHDM KKNSRNDADE EKRKRKRKCS DDLKKSVVND ASKEATSHSD WRKNRKAGSD AEQRGKKLLN GDKKAKSRKV TTPFFEKMRK IKMQRTSNQN GEKNMKSDGD SYKKTVPLSV NKGKMEKDGT NKRTLSNTLV AKERKMRPSD SMEMKMKKKK RDASFVQPDE RTAQTFSTKN KEKKRKAPST PLKREQKERV ASSDNKKETK KACIVAIGNE KKNCRDGKKK KRKAAFAFFK FVRDEFEELL FIPPAVAPSL KDLIDRHVYL EDSEGKCSKI RLSVVDGSLA FYEGWNSFVS EHCIKWGEFL LFEYTPESTF SVRVFGIDSC ERLHFSVKSG GKGAVKKRKE RHTLSDDLIS HYNGQYQDSE DIHDGPNVSG ESPRSKEPKI TVDAEIGTRN LVAKSINAAS ETQDSERVES GIGYGSLGAL GNKVRNLSNG ECDTRSDSVF CIQEKTRRSE VIIISDEAYS TQVDEDTMKQ TAPSEASEIH HVTINTQKDL ERVVDGVCCE SSVALNNKMG NLILGEPKNK NISPACSTEK TNGSEITPTT GVIPLTQENI DTVKLNTLSC FEEDRSTTRE SELAAAIPTT SETHDSDKDL GQKHQRNSVQ VNSIIAVDKY PNDSEMNISG NIFRIYEAPA GTRCLEKWKR GIVNGRAALD DIGQVRPEKT QKAGEKLVGN CGAMGESPVD LRIESDVTDT CLKPILNIPI EELSILDSVS ISKCGRSRTE VNHLFNQKGA TVQLQTKKEP LKPTGSSGNR KGDKIAVSVN RVFAHQSELQ IPQQENGNFT SCVTPVALLP AKAELLDLDD HSLQFCIPST IQKWLELPKS LPITCRQKGR YDRNVVILKD PMRRLWPVFY HDKPVFVGFT AGWKPFAAAN NLQAGDVCKF VKEMDEDELA FQVYITRK // ID Y5498_ORYSJ Reviewed; 394 AA. AC Q6L4H4; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 30-AUG-2005, sequence version 1. DT 15-MAR-2017, entry version 74. DE RecName: Full=AP2/ERF and B3 domain-containing protein Os05g0549800; GN OrderedLocusNames=Os05g0549800, LOC_Os05g47650; ORFNames=P0560C03.2; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y; RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., RA Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.; RT "A fine physical map of the rice chromosome 5."; RL Mol. Genet. Genomics 274:337-345(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 52-394. RC STRAIN=cv. Nipponbare; RG The rice full-length cDNA consortium; RT "Oryza sativa full length cDNA."; RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000255|PROSITE-ProRule:PRU00366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC135925; AAT39261.1; -; Genomic_DNA. DR EMBL; AP008211; BAF18151.1; -; Genomic_DNA. DR EMBL; AP014961; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AK243363; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015637817.1; XM_015782331.1. DR UniGene; Os.9064; -. DR ProteinModelPortal; Q6L4H4; -. DR SMR; Q6L4H4; -. DR STRING; 39947.LOC_Os05g47650.1; -. DR PaxDb; Q6L4H4; -. DR PRIDE; Q6L4H4; -. DR GeneID; 4339522; -. DR KEGG; osa:4339522; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR InParanoid; Q6L4H4; -. DR KO; K09287; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000059680; Chromosome 5. DR Genevisible; Q6L4H4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 394 AP2/ERF and B3 domain-containing protein FT Os05g0549800. FT /FTId=PRO_0000377733. FT DNA_BIND 68 123 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 193 314 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 394 AA; 41381 MW; 394B5C8197A5BCBF CRC64; MDSTSCLLDD ASSGASTGKK AAAAAASKAL QRVGSGASAV MDAAEPGAEA DSGGERRGGG GGKLPSSKYK GVVPQPNGRW GAQIYERHQR VWLGTFTGEA EAARAYDVAA QRFRGRDAVT NFRPLAESDP EAAVELRFLA SRSKAEVVDM LRKHTYLEEL TQNKRAFAAI SPPPPKHPAS SPTSSSAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQLPPPTTTS SVAAAADAAA GGGDCKGVLL NFEDAAGKVW KFRYSYWNSS QSYVLTKGWS RFVKEKGLHA GDAVGFYRAA GKNAQLFIDC KVRAKPTTAA AAAAFLSAVA AAAAPPPAVK AIRLFGVDLL TAAAPELQDA GGAAMTKSKR AMDAMAESQA HVVFKKQCIE LALT // ID ARFG_ORYSJ Reviewed; 678 AA. AC Q6YVY0; B9F0K2; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 05-JUL-2017, entry version 89. DE RecName: Full=Auxin response factor 7; GN Name=ARF7; OrderedLocusNames=Os02g0557200, LOC_Os02g35140; GN ORFNames=OsJ_07141 {ECO:0000312|EMBL:EEE57194.1}, OSJNBb0038F20.6; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005808; BAD16420.1; -; Genomic_DNA. DR EMBL; AP008208; BAF09051.1; -; Genomic_DNA. DR EMBL; AP014958; BAS79226.1; -; Genomic_DNA. DR EMBL; CM000139; EEE57194.1; -; Genomic_DNA. DR EMBL; AK070026; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015625501.1; XM_015770015.1. DR UniGene; Os.59273; -. DR ProteinModelPortal; Q6YVY0; -. DR SMR; Q6YVY0; -. DR STRING; 39947.LOC_Os02g35140.1; -. DR PaxDb; Q6YVY0; -. DR EnsemblPlants; OS02T0557200-01; OS02T0557200-01; OS02G0557200. DR GeneID; 4329672; -. DR Gramene; OS02T0557200-01; OS02T0557200-01; OS02G0557200. DR KEGG; osa:4329672; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q6YVY0; -. DR KO; K14486; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q6YVY0; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 678 Auxin response factor 7. FT /FTId=PRO_0000299261. FT DOMAIN 548 641 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 128 230 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 250 250 V -> F (in Ref. 5; AK070026). FT {ECO:0000305}. SQ SEQUENCE 678 AA; 74787 MW; 2FCCB100AE376E53 CRC64; MAGSVVAAAA AAGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKVQWD EPSVVPRPDR VSPWELEPLA VSNSQPSPQP PARNKRARPP ASNSIAPELP PVFGLWKSSA ESTQGFSFSG LQRTQELYPS SPNPIFSTSL NVGFSTKNEP SALSNKHFYW PMRETRANSY SASISKVPSE KKQEPSSAGC RLFGIEISSA VEATSPLAAV SGVGQDQPAA SVDAESDQLS QPSHANKSDA PAASSEPSPH ETQSRQVRSC TKVIMQGMAV GRAVDLTRLH GYDDLRCKLE EMFDIQGELS ASLKKWKVVY TDDEDDMMLV GDDPWPEFCS MVKRIYIYTY EEAKQLTPKS KLPIIGDAIK PNPNKQSPES DMPHSDLDST APVTDKDC // ID ARFU_ORYSJ Reviewed; 1116 AA. AC Q6YZW0; Q0J4D1; Q8S978; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-SEP-2007, sequence version 2. DT 05-JUL-2017, entry version 81. DE RecName: Full=Auxin response factor 21; DE AltName: Full=OsARF7b; GN Name=ARF21; Synonyms=ARF7B; GN OrderedLocusNames=Os08g0520500, LOC_Os08g40900; GN ORFNames=OJ1003_A09.14, P0689E12.38; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-637 (ISOFORM 1). RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [5] RP NUCLEOTIDE SEQUENCE [MRNA] OF 18-1113 (ISOFORM 2). RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q6YZW0-1; Sequence=Displayed; CC Name=2; CC IsoId=Q6YZW0-2; Sequence=VSP_027593; CC Note=May be due to competing acceptor splice site. No CC experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- INDUCTION: By auxin under dark condition. Down-regulated by auxin CC under light condition. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF24182.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004622; BAD09704.1; -; Genomic_DNA. DR EMBL; AP005509; BAD10439.1; -; Genomic_DNA. DR EMBL; AP008214; BAF24182.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014964; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AK111639; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AB071297; BAB85917.1; -; mRNA. DR RefSeq; XP_015649755.1; XM_015794269.1. [Q6YZW0-1] DR UniGene; Os.48218; -. DR UniGene; Os.89284; -. DR ProteinModelPortal; Q6YZW0; -. DR SMR; Q6YZW0; -. DR STRING; 39947.LOC_Os08g40900.1; -. DR PaxDb; Q6YZW0; -. DR PRIDE; Q6YZW0; -. DR GeneID; 4346065; -. DR KEGG; osa:4346065; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q6YZW0; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000059680; Chromosome 8. DR Genevisible; Q6YZW0; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 1116 Auxin response factor 21. FT /FTId=PRO_0000299280. FT DOMAIN 998 1082 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 132 234 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 466 730 Gln-rich. FT VAR_SEQ 107 109 Missing (in isoform 2). FT {ECO:0000303|PubMed:11922106}. FT /FTId=VSP_027593. FT CONFLICT 132 132 F -> L (in Ref. 4; AK111639). FT {ECO:0000305}. SQ SEQUENCE 1116 AA; 123716 MW; 2C384F461515D1DC CRC64; MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ QPHVQHQQIP QQLHHQQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGRQ LLKTDDVPST STSPSTNSNP VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEQRPATGQ DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP QEEMQMRLVG DFGDSFLPNQ ACSSSDGGHP WRITGD // ID Y8251_ORYSJ Reviewed; 391 AA. AC Q6Z0D2; A0A0P0XEN4; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 12-APR-2017, entry version 62. DE RecName: Full=Putative B3 domain-containing protein Os08g0325100; GN OrderedLocusNames=Os08g0325134, LOC_Os08g23570; GN ORFNames=OsJ_26886, OSJNBa0078D03.39, P0703C03.19; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004637; BAD03253.1; -; Genomic_DNA. DR EMBL; AP005493; BAD03676.1; -; Genomic_DNA. DR EMBL; AP014964; BAT04896.1; -; Genomic_DNA. DR EMBL; CM000145; EAZ42313.1; -; Genomic_DNA. DR PaxDb; Q6Z0D2; -. DR EnsemblPlants; OS08T0325134-00; OS08T0325134-00; OS08G0325134. DR Gramene; OS08T0325134-00; OS08T0325134-00; OS08G0325134. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR HOGENOM; HOG000084532; -. DR InParanoid; Q6Z0D2; -. DR OMA; RMGDSMM; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000059680; Chromosome 8. DR Genevisible; Q6Z0D2; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 391 Putative B3 domain-containing protein FT Os08g0325100. FT /FTId=PRO_0000376980. FT DNA_BIND 32 125 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 44671 MW; 37174CD560538A39 CRC64; MGTWCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD IPEEIQLETH NRNSYTVRVD KSQEKVIFAA GWAQFVKTFD LHMGDSMMFR FKGNSQFDVI IFDQVGREKV CSVAVDDYLD PNVQEGRTDA TETLNSSRAH SQDDYLDPNV QEGRTNATET LNSSRAHSQP MPMQTPATET LNSSRAHSQD MPMQSPATET LNSSRAHPQP MPMQLPTETV NHFHAPHYPM QMPIENMALS RTQAMPTQMQ SPPTYRWTQV QRDNLRYSLP SEDQGCRVGV IPDPIIGRRT KLNPVQEKVV NFKIQHIHSE IPIFVAVIKR SNVSGVLSTL SVAKRYVDEY LGGERFISLS RLGGKWGIRL LLVGVGVAQG W // ID Y8347_ORYSJ Reviewed; 270 AA. AC Q6Z0D9; A0A0P0XEK2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 05-JUL-2017, entry version 66. DE RecName: Full=B3 domain-containing protein Os08g0324300; GN OrderedLocusNames=Os08g0324300, LOC_Os08g23470; GN ORFNames=OSJNBa0078D03.26, P0703C03.6; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004637; BAD03246.1; -; Genomic_DNA. DR EMBL; AP005493; BAD03669.1; -; Genomic_DNA. DR EMBL; AP008214; BAF23460.1; -; Genomic_DNA. DR EMBL; AP014964; BAT04892.1; -; Genomic_DNA. DR EMBL; AK068359; BAG90877.1; -; mRNA. DR UniGene; Os.52623; -. DR SMR; Q6Z0D9; -. DR PaxDb; Q6Z0D9; -. DR EnsemblPlants; OS08T0324300-01; OS08T0324300-01; OS08G0324300. DR Gramene; OS08T0324300-01; OS08T0324300-01; OS08G0324300. DR eggNOG; ENOG410JWMI; Eukaryota. DR eggNOG; ENOG41104TH; LUCA. DR InParanoid; Q6Z0D9; -. DR OMA; FSENNDC; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000059680; Chromosome 8. DR Genevisible; Q6Z0D9; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 270 B3 domain-containing protein FT Os08g0324300. FT /FTId=PRO_0000376982. FT DNA_BIND 23 116 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 254 260 Poly-Ser. SQ SEQUENCE 270 AA; 30592 MW; DB36FD2A985E6F4B CRC64; MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV QRGNSSKGNM TTMSSSSMSS GYNSIIICIS // ID IDEF1_ORYSJ Reviewed; 362 AA. AC Q6Z1Z3; A0A0P0XAM4; A9JTY5; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 07-JUN-2017, entry version 75. DE RecName: Full=B3 domain-containing protein IDEF1; DE AltName: Full=Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1; GN Name=IDEF1; OrderedLocusNames=Os08g0101000, LOC_Os08g01090; GN ORFNames=B1147B12.12, OsJ_25718; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP IDENTIFICATION, FUNCTION, SUBCELLULAR LOCATION, AND TISSUE RP SPECIFICITY. RC STRAIN=cv. Nipponbare; RX PubMed=18025467; DOI=10.1073/pnas.0707010104; RA Kobayashi T., Ogo Y., Nakanishi Itai R., Nakanishi H., Takahashi M., RA Mori S., Nishizawa N.K.; RT "The transcription factor IDEF1 regulates the response to and RT tolerance of iron deficiency in plants."; RL Proc. Natl. Acad. Sci. U.S.A. 104:19150-19155(2007). CC -!- FUNCTION: Transcription regulator involved in iron deficiency CC response and tolerance. May regulate directly iron transporters or CC other transcription factors involved in iron-deficiency response. CC Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 CC element found in the promoter of the barley iron deficiency- CC inducible gene IDS2. {ECO:0000269|PubMed:18025467}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:18025467}. CC -!- TISSUE SPECIFICITY: Expressed in roots. CC {ECO:0000269|PubMed:18025467}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005406; BAD03551.1; -; Genomic_DNA. DR EMBL; AP008214; BAF22671.1; -; Genomic_DNA. DR EMBL; AP014964; BAT03400.1; -; Genomic_DNA. DR EMBL; CM000145; EEE67890.1; -; Genomic_DNA. DR EMBL; AK107456; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; BR000654; FAA00380.1; -; mRNA. DR RefSeq; XP_015648159.1; XM_015792673.1. DR UniGene; Os.13809; -. DR SMR; Q6Z1Z3; -. DR STRING; 39947.LOC_Os08g01090.1; -. DR PaxDb; Q6Z1Z3; -. DR PRIDE; Q6Z1Z3; -. DR EnsemblPlants; OS08T0101000-01; OS08T0101000-01; OS08G0101000. DR GeneID; 4344415; -. DR Gramene; OS08T0101000-01; OS08T0101000-01; OS08G0101000. DR KEGG; osa:4344415; -. DR eggNOG; ENOG410JDZ5; Eukaryota. DR eggNOG; ENOG41116M3; LUCA. DR HOGENOM; HOG000070867; -. DR InParanoid; Q6Z1Z3; -. DR OMA; KFIIRGE; -. DR OrthoDB; EOG09360K5M; -. DR Proteomes; UP000059680; Chromosome 8. DR Genevisible; Q6Z1Z3; OS. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:UniProtKB. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:UniProtKB. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 362 B3 domain-containing protein IDEF1. FT /FTId=PRO_0000376938. FT DNA_BIND 253 355 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 6 13 Poly-Gly. FT COMPBIAS 47 72 Asn/His-rich. FT CONFLICT 229 229 L -> F (in Ref. 5; AK107456). FT {ECO:0000305}. SQ SEQUENCE 362 AA; 39942 MW; 70F577BAEEB4763D CRC64; MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PFPNPFPAPS SGAEPPHPHN HNHNHNHNHN IHNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF TSLAAHSSTA PSNAVHYSFS PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTSPSMAPNI CTHMPPIEGP ISAKEDKKPE ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT NP // ID ARFE_ORYSJ Reviewed; 1142 AA. AC Q6Z2W3; A3A309; Q0E417; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-SEP-2007, sequence version 2. DT 05-JUL-2017, entry version 81. DE RecName: Full=Auxin response factor 5; GN Name=ARF5; OrderedLocusNames=Os02g0141100, LOC_Os02g04810; GN ORFNames=OJ1679_B08.29, OsJ_005181; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- INDUCTION: Down-regulated by auxin under light condition. CC {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAD10267.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAF07771.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005294; BAD10267.1; ALT_INIT; Genomic_DNA. DR EMBL; AP008208; BAF07771.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014958; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000139; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; XP_015627049.1; XM_015771563.1. DR ProteinModelPortal; Q6Z2W3; -. DR SMR; Q6Z2W3; -. DR STRING; 39947.LOC_Os02g04810.1; -. DR PaxDb; Q6Z2W3; -. DR GeneID; 4328265; -. DR KEGG; osa:4328265; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q6Z2W3; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000059680; Chromosome 2. DR Genevisible; Q6Z2W3; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 1142 Auxin response factor 5. FT /FTId=PRO_0000299258. FT DOMAIN 1009 1093 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 148 250 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 427 730 Gln-rich. SQ SEQUENCE 1142 AA; 126760 MW; 4C10FD37F01D4953 CRC64; MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK DVDAHVPSYP NLPSKLICLL HGVNLHADPD TDEVYAQMTL QPVNTYGKEA LQISELALKQ ARPQMEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDIHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVIVVRDEKH QLLLGIRRAN RQPTNISSSV LSSDSMHIGV LAAAAHAAAN SSPFTIFYNP RASPTEFVIP FAKYQKALYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESAAGERRN RVSIWEIEPV AAPFFLCPQP FFGVKRPRQL DDESEMENLF KRAMPWLGEE VCIKDTQNQN STAPGLSLVQ WMNMNRQQSS SLANTAAQSE YLQALGNPAM QNLAADELAR QLYVQNNLLQ QNCIQFNSPK LPQQMQTMND LSKAAIPLNQ LGAIINPQDQ KQDAVNHQRQ QNSIQVIPLS QAQSNLVQAQ VIVQNQMQQQ KPSPTQNPQR INGQRLLLSH QQKDQNLQLQ QQLLLQQKQQ LQQQQQQQQQ NQQQLNKSLG QLVNLASQQS KLFDEELQLQ ILQKLQQQSL MSQSTSTLSQ PPLIQEQQKL ITDMQKQLSN SHSLAQQQMM PQQEIKPSLQ ATPLLPTVQQ EQQQKLLQKQ VSLADVSGVA FQPISSTNVI PKTGGAMIIS GATQSVVTEE MPSCSTSPST ANGNHFTQST KNRHCINTER LPPSTAPMLI PTSIDAVTAT PLMTKELPKP NNNVKQSVVN SKLPNVAPGP QNCINHALQT DNLETSSSAT SLCPSRTDGL VHQGFPSSNF NQHQMFKDAL PDVEMEGVDP SNSGLFGINN DNLLGFPIET EDLLINALDS VKYQNHISTD VENNYPMQKD ALQEISTSMV SQSFGQSDMA FNSIDSAIND GAFLNKNSWP AAPLLQRMRT FTKVYKRGAV GRSIDIGRYS GYEELKHALA RMFGIEGQLE DRQRIGWKLV YKDHEDDILL LGDDPWEEFV NCVRCIRILS PQEVQQMSLD GDLGSNVLPN QACSSSDGVN GWRPRCDQNP GNPSIGPYDQ FE // ID Y7797_ORYSJ Reviewed; 949 AA. AC Q6Z3U3; A0A0P0XAS4; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 07-JUN-2017, entry version 79. DE RecName: Full=B3 domain-containing protein Os07g0679700; GN OrderedLocusNames=Os07g0679700, LOC_Os07g48200; GN ORFNames=OJ1205_F02.12; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005243; BAC84102.1; -; Genomic_DNA. DR EMBL; AP008213; BAF22556.1; -; Genomic_DNA. DR EMBL; AP014963; BAT03230.1; -; Genomic_DNA. DR EMBL; AK101356; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015646777.1; XM_015791291.1. DR UniGene; Os.20963; -. DR SMR; Q6Z3U3; -. DR STRING; 39947.LOC_Os07g48200.1; -. DR PaxDb; Q6Z3U3; -. DR PRIDE; Q6Z3U3; -. DR EnsemblPlants; OS07T0679700-01; OS07T0679700-01; OS07G0679700. DR GeneID; 4344293; -. DR Gramene; OS07T0679700-01; OS07T0679700-01; OS07G0679700. DR KEGG; osa:4344293; -. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; Q6Z3U3; -. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000059680; Chromosome 7. DR Genevisible; Q6Z3U3; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Metal-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation; Zinc; KW Zinc-finger. FT CHAIN 1 949 B3 domain-containing protein FT Os07g0679700. FT /FTId=PRO_0000376976. FT DNA_BIND 363 464 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 623 673 CW-type. {ECO:0000255|PROSITE- FT ProRule:PRU00454}. FT CONFLICT 609 609 P -> T (in Ref. 4; AK101356). FT {ECO:0000305}. SQ SEQUENCE 949 AA; 104070 MW; 42E00159DD64FB3B CRC64; MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK QRQSEREEAE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRD GDVTMFDKVD INKGHIDLNF HPTAVRDEER HGGQPRVSMV SLLEVANRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ PALVESEERT SNNDGGRVAT AEQPESMAVD EAGDNQPDKA AGDSAAALA // ID Y8577_ORYSJ Reviewed; 287 AA. AC Q7EZD5; A0A0P0XBU2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 07-JUN-2017, entry version 64. DE RecName: Full=Putative B3 domain-containing protein Os08g0157700; GN OrderedLocusNames=Os08g0157700, LOC_Os08g06120; GN ORFNames=OsJ_26107, P0498E12.101; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP004698; BAC99651.1; -; Genomic_DNA. DR EMBL; AP014964; BAT03908.1; -; Genomic_DNA. DR EMBL; CM000145; EAZ41573.1; -; Genomic_DNA. DR RefSeq; XP_015649372.1; XM_015793886.1. DR UniGene; Os.103114; -. DR SMR; Q7EZD5; -. DR PaxDb; Q7EZD5; -. DR EnsemblPlants; OS08T0157700-00; OS08T0157700-00; OS08G0157700. DR GeneID; 107277666; -. DR Gramene; OS08T0157700-00; OS08T0157700-00; OS08G0157700. DR KEGG; osa:107277666; -. DR eggNOG; ENOG410JS8F; Eukaryota. DR eggNOG; ENOG41116NU; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q7EZD5; -. DR OMA; FNVECSG; -. DR OrthoDB; EOG09360NGP; -. DR Proteomes; UP000059680; Chromosome 8. DR Genevisible; Q7EZD5; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 287 Putative B3 domain-containing protein FT Os08g0157700. FT /FTId=PRO_0000376983. FT DNA_BIND 71 168 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 15 28 Glu-rich. FT COMPBIAS 55 60 Poly-Gly. SQ SEQUENCE 287 AA; 30720 MW; 4A8830F5B0DF167F CRC64; MYMDLTLGGA LLQVEEATEE EEEEEEEEQA LGQEPAPAAA AAALVLGRRH GVVVGGGGGG VVVAAEREHM FDKVVTPSDV GKLNRLVVPK QHAERFFPAA AAGTQLCFED RAGTPWRFRY SYWGSSQSYV MTKGWSRFVR AARLSAGDTV SFSRAADGRY FIDYRHCHRH GGRDISFASA ATAMPAAAWP LFGRVQTAAP VSYGGGHGSA AAATMFLDTV APVAAAGGHR GEVGPSGQRS FRLFGVNVEC GGDVDAAAEE EDADDDVDDG DHRRGEEMEL VMWTNHR // ID Y4814_ORYSJ Reviewed; 316 AA. AC Q7F9W2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 2. DT 05-JUL-2017, entry version 57. DE RecName: Full=B3 domain-containing protein Os04g0581400; GN OrderedLocusNames=Os04g0581400, LOC_Os04g49230; GN ORFNames=OSJNBa0088A01.1; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAE04153.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL662987; CAE04153.1; ALT_INIT; Genomic_DNA. DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR SMR; Q7F9W2; -. DR PaxDb; Q7F9W2; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR InParanoid; Q7F9W2; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q7F9W2; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 316 B3 domain-containing protein FT Os04g0581400. FT /FTId=PRO_0000376967. FT DNA_BIND 110 215 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 13 41 Glu-rich. FT COMPBIAS 91 98 Poly-Gly. SQ SEQUENCE 316 AA; 34509 MW; 22CC2ECA92C82ACB CRC64; MEFATTSSRF SKEEEEEEEG EQEMEQEQDE EEEEAEASPR EIPFMTSAAA AATASSSSPT SVSPSATASA AASTSASGSP FRSSDGAGAS GSGGGGGGED VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS AANEKGLLLS FEDRTGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFCRGAA EATRDRLFID WKRRADVRDP HRFQRLPLPM TSPYGPWGGG AGASSCRPRR PPRSTSITAF ARASTSATST PLCRRGSSSS SAPQGRGFIS TRPCHRRRRH LRLLTNSTLR CTTRAP // ID Y1030_ORYSJ Reviewed; 272 AA. AC Q7XFU9; Q0IYF5; Q94HQ5; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2003, sequence version 1. DT 15-FEB-2017, entry version 68. DE RecName: Full=B3 domain-containing protein Os10g0323000; GN OrderedLocusNames=Os10g0323000, LOC_Os10g17630; GN ORFNames=OsJ_31059, OSJNBa0065C16.16; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12791992; DOI=10.1126/science.1083523; RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., RA Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., RA Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H., RA Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., RA Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., RA De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., RA Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., RA Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., RA Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., RA Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., RA Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., RA Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., RA Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., RA Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., RA Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., RA Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., RA Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.; RT "In-depth view of structure, activity, and evolution of rice RT chromosome 10."; RL Science 300:1566-1569(2003). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF26260.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC074354; AAK92582.1; -; Genomic_DNA. DR EMBL; DP000086; AAP52952.1; -; Genomic_DNA. DR EMBL; AP008216; BAF26260.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014966; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000147; EAZ15646.1; -; Genomic_DNA. DR PaxDb; Q7XFU9; -. DR HOGENOM; HOG000084828; -. DR Proteomes; UP000059680; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 272 B3 domain-containing protein FT Os10g0323000. FT /FTId=PRO_0000376984. FT DNA_BIND 39 132 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 272 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 30761 MW; 6E5714ED9A0A6BB3 CRC64; MVPDQDGELR HDVCSLSTSL RLTAHVTSSI VHEQSSNIRY GENRKHGQRY AYHEPLPPEI VARCNGHDGK HLTLVTRNSK PVNVRLEKRG QSFYISKGWK KFVELTDLRV GQCVRFSVSS PSTLDLLILD KHGTSLAIPP SKRDLKLKSK RSTHQDSKGH PSNTDPGPSR IINRRVTKSE SSANTQLLVQ YFSKRYPIDH LEQLMTGRTE DIEVQTLVGP SVNMVLHTST DHRCNLKKGW TDFALSNGIK LNTVCIFHFY KTTHLGVIVD IF // ID Y1086_ORYSJ Reviewed; 168 AA. AC Q7XGM6; A0A0P0XS72; Q94GT2; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2003, sequence version 1. DT 12-APR-2017, entry version 61. DE RecName: Full=Putative B3 domain-containing protein Os10g0158600; GN OrderedLocusNames=Os10g0158625, LOC_Os10g07060; GN ORFNames=OsJ_30781, OSJNAa0036D19.3, OSJNBa0036D19.9; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12791992; DOI=10.1126/science.1083523; RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., RA Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., RA Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H., RA Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., RA Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., RA De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., RA Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., RA Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., RA Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., RA Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., RA Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., RA Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., RA Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., RA Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., RA Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., RA Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., RA Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.; RT "In-depth view of structure, activity, and evolution of rice RT chromosome 10."; RL Science 300:1566-1569(2003). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC087723; AAK95681.1; -; Genomic_DNA. DR EMBL; AC116600; AAN04135.1; -; Genomic_DNA. DR EMBL; DP000086; AAP52219.1; -; Genomic_DNA. DR EMBL; AP014966; BAT09964.1; -; Genomic_DNA. DR EMBL; CM000147; EEE50597.1; -; Genomic_DNA. DR UniGene; Os.46864; -. DR PaxDb; Q7XGM6; -. DR EnsemblPlants; OS10T0158625-00; OS10T0158625-00; OS10G0158625. DR Gramene; OS10T0158625-00; OS10T0158625-00; OS10G0158625. DR InParanoid; Q7XGM6; -. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000059680; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 168 Putative B3 domain-containing protein FT Os10g0158600. FT /FTId=PRO_0000376986. FT DNA_BIND 4 97 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 168 AA; 18378 MW; CC8BA7B87561B936 CRC64; MSSVVFASAR LNATNQSYLP VPITLATAYE MQHGDSLRLK TSHGLKIKIR IKEAASTLYM TTGWKEFAEA TGLETGETIL FRMSSRSKAR VMLLNRQCLI RCPVKTPSTT SSDKNRSLSP SDQLTRASTS AHPSTSKSIP PLRNGTGSTK RSIADTSFCH QLKLTAEN // ID Y4765_ORYSJ Reviewed; 438 AA. AC Q7XKC4; A0A0P0WGB4; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 2. DT 07-JUN-2017, entry version 53. DE RecName: Full=Putative B3 domain-containing protein Os04g0676650; GN OrderedLocusNames=Os04g0676650, Os04g0676500, LOC_Os04g58010; GN ORFNames=OSJNBa0064G10.7; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL606668; CAE05756.1; -; Genomic_DNA. DR EMBL; AP014960; BAS91626.1; -; Genomic_DNA. DR RefSeq; XP_015635176.1; XM_015779690.1. DR RefSeq; XP_015635177.1; XM_015779691.1. DR SMR; Q7XKC4; -. DR EnsemblPlants; OS04T0676650-00; OS04T0676650-00; OS04G0676650. DR GeneID; 107276135; -. DR Gramene; OS04T0676650-00; OS04T0676650-00; OS04G0676650. DR KEGG; osa:107276135; -. DR InParanoid; Q7XKC4; -. DR OMA; YTSTQIF; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q7XKC4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 438 Putative B3 domain-containing protein FT Os04g0676650. FT /FTId=PRO_0000376966. FT DNA_BIND 302 404 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 12 26 Poly-Gly. FT COMPBIAS 224 232 Poly-Ser. SQ SEQUENCE 438 AA; 48646 MW; BBCFA378A0476A76 CRC64; MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNVFYQNL TFNSWTSNNM PRNPVYTSFH PAAIEDHHAP LFHSNNHDID PGFQTNFRMD QAFVPASSPF PPVSSSSHSF SSAKISNGPT YTKKAKKSNV KDPPIVFRRS DMESEKNDDN PDQTPVSEPP SMNQNGENLI IRFNCREYRV ILRKELTNSD VGNIGRIVMP KRDAEAHLPA LHQREGVTLK MDDFKFETTW NFKYRFWPNN KSRMYVLEST GGFVKHHGLQ TGDIFIIYKS SESGKFVVRG EKAIKPNAIM PVVDCSCKNE LNKSEECGFT ISLQTKKT // ID IDEFH_ORYSJ Reviewed; 433 AA. AC Q7XKC5; A0A0N7KJX4; A3AYL6; A9JTY6; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 11-MAY-2016, sequence version 2. DT 05-JUL-2017, entry version 77. DE RecName: Full=B3 domain-containing protein Os04g0676600 {ECO:0000305}; DE AltName: Full=Protein IDEF1 homolog {ECO:0000303|PubMed:18025467}; GN OrderedLocusNames=Os04g0676600 {ECO:0000312|EMBL:BAS91625.1}, GN LOC_Os04g58000 {ECO:0000305}; GN ORFNames=OsJ_16616 {ECO:0000312|EMBL:EAZ32405.1}, GN OSJNBa0064G10.6 {ECO:0000312|EMBL:CAE05755.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], IDENTIFICATION, AND FUNCTION. RC STRAIN=cv. Nipponbare; RX PubMed=18025467; DOI=10.1073/pnas.0707010104; RA Kobayashi T., Ogo Y., Nakanishi Itai R., Nakanishi H., Takahashi M., RA Mori S., Nishizawa N.K.; RT "The transcription factor IDEF1 regulates the response to and RT tolerance of iron deficiency in plants."; RL Proc. Natl. Acad. Sci. U.S.A. 104:19150-19155(2007). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [5] RP GENOME REANNOTATION, AND SEQUENCE REVISION TO 373. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- FUNCTION: Probable transcription regulator that binds specifically CC to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the CC promoter of the barley iron deficiency-inducible gene IDS2. CC {ECO:0000269|PubMed:18025467}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; BR000655; FAA00381.1; -; mRNA. DR EMBL; AL606668; CAE05755.1; -; Genomic_DNA. DR EMBL; AP008210; BAF16171.1; -; Genomic_DNA. DR EMBL; AP014960; BAS91625.1; -; Genomic_DNA. DR EMBL; CM000141; EAZ32405.1; -; Genomic_DNA. DR EMBL; AK072874; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015635183.1; XM_015779697.1. DR UniGene; Os.53477; -. DR SMR; Q7XKC5; -. DR PaxDb; Q7XKC5; -. DR PRIDE; Q7XKC5; -. DR EnsemblPlants; OS04T0676600-01; OS04T0676600-01; OS04G0676600. DR GeneID; 4337398; -. DR Gramene; OS04T0676600-01; OS04T0676600-01; OS04G0676600. DR KEGG; osa:4337398; -. DR eggNOG; ENOG410JEQD; Eukaryota. DR eggNOG; ENOG410YQRA; LUCA. DR HOGENOM; HOG000241121; -. DR InParanoid; Q7XKC5; -. DR OMA; GFVKQHG; -. DR OrthoDB; EOG09360FTN; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q7XKC5; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IDA:UniProtKB. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 433 B3 domain-containing protein FT Os04g0676600. FT /FTId=PRO_0000376939. FT DNA_BIND 297 399 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 220 228 Poly-Ser. FT CONFLICT 102 102 N -> D (in Ref. 7; AK072874). FT {ECO:0000305}. FT CONFLICT 373 373 G -> V (in Ref. 2; CAE05755, 3; BAF16171 FT and 6; EAZ32405). SQ SEQUENCE 433 AA; 48667 MW; D13B8EF38C74970F CRC64; MADTRGSTSS GGGDDRGREG HDDFTGGGQY NRYHRILEAV PSPLVRRENG VHHQYPTGLI HHPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN FQDLRPMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPIDAKK AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSHN SANSTIRFNC REYRVILRKE LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE ECGFAISLLT KKT // ID ARFJ_ORYSJ Reviewed; 699 AA. AC Q7XKK6; A3AVM1; Q0JBP3; Q7XUA0; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 11-SEP-2007, sequence version 3. DT 05-JUL-2017, entry version 85. DE RecName: Full=Auxin response factor 10; GN Name=ARF10; OrderedLocusNames=Os04g0519700, LOC_Os04g43910; GN ORFNames=OsJ_014843, OSJNBa0019D11.3, OSJNBb0061C13.15; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF15244.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAD41455.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=CAE05633.2; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=CM000141; Type=Frameshift; Positions=134, 139; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL662958; CAD41455.1; ALT_INIT; Genomic_DNA. DR EMBL; AL731629; CAE05633.2; ALT_INIT; Genomic_DNA. DR EMBL; AP008210; BAF15244.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000141; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR RefSeq; XP_015633845.1; XM_015778359.1. DR UniGene; Os.8374; -. DR ProteinModelPortal; Q7XKK6; -. DR SMR; Q7XKK6; -. DR PaxDb; Q7XKK6; -. DR PRIDE; Q7XKK6; -. DR GeneID; 4336419; -. DR KEGG; osa:4336419; -. DR eggNOG; ENOG410JQUD; Eukaryota. DR eggNOG; ENOG410XYC6; LUCA. DR InParanoid; Q7XKK6; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q7XKK6; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 699 Auxin response factor 10. FT /FTId=PRO_0000299265. FT DOMAIN 613 693 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 125 227 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 431 437 Poly-His. SQ SEQUENCE 699 AA; 75737 MW; 937A7D491A14D9A5 CRC64; MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSRP RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI YRGTPRRHLL TTGWSPFVNK KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL SSIPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRNPPYA ELPLEGQIFT GPVFPPNPMA HDHHHHHGFP FLPFPDSSAQ PAGIQGARHA QFASPFPEFH IGNLQPNLML YAGIRLPPAD RAAPAPRPPR IIISTDLTIG SPGKPDDAAC SPSSGGKKID DTKPRGFLLF GQAILTEEQI KNGNSDGRPA SPNWDAEKAP NTSEGSDSGV TQGSPTKNTT PSWSLPYFGG NNISRASEYE LNPGQCKVFV ESETVGRSLD LSALSSFEEL YACLSDMFSI GSDELRSHLV YRSPAGEVKH AGDEPFCAFV KSARKLRILT DAGSDNLGD // ID Y4869_ORYSJ Reviewed; 212 AA. AC Q7XLP4; Q0JDP9; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 3. DT 15-MAR-2017, entry version 60. DE RecName: Full=B3 domain-containing protein Os04g0386900; GN OrderedLocusNames=Os04g0386900, LOC_Os04g31730; GN ORFNames=OSJNBa0044M19.12; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 24-212. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF14538.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=CAE05025.2; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL731601; CAE05025.2; ALT_INIT; Genomic_DNA. DR EMBL; AP008210; BAF14538.1; ALT_INIT; Genomic_DNA. DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AK119999; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015635251.1; XM_015779765.1. DR UniGene; Os.50181; -. DR SMR; Q7XLP4; -. DR STRING; 39947.LOC_Os04g31730.1; -. DR PaxDb; Q7XLP4; -. DR PRIDE; Q7XLP4; -. DR GeneID; 4335657; -. DR KEGG; osa:4335657; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR HOGENOM; HOG000240752; -. DR InParanoid; Q7XLP4; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q7XLP4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 212 B3 domain-containing protein FT Os04g0386900. FT /FTId=PRO_0000376968. FT DNA_BIND 93 191 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 212 AA; 22326 MW; A49FD63B8CEAE1F5 CRC64; MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID // ID Y4474_ORYSJ Reviewed; 434 AA. AC Q7XS74; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 3. DT 12-APR-2017, entry version 63. DE RecName: Full=Putative B3 domain-containing protein Os04g0347400; GN OrderedLocusNames=Os04g0347400, Os04g0347500, GN LOC_Os04g27990/LOC_Os04g28000; ORFNames=OsJ_14357, OSJNBa0020I02.7; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAE02099.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=EAZ30310.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL662963; CAE02099.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CM000141; EAZ30310.1; ALT_SEQ; Genomic_DNA. DR SMR; Q7XS74; -. DR PaxDb; Q7XS74; -. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; Q7XS74; -. DR Proteomes; UP000059680; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 434 Putative B3 domain-containing protein FT Os04g0347400. FT /FTId=PRO_0000376965. FT DNA_BIND 27 124 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 246 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 326 432 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 46 54 Poly-Gly. SQ SEQUENCE 434 AA; 47463 MW; 442DEA671A8C3C5F CRC64; MPGDHAGAGA AVGAAKAMQL KVLMPSSFHK MRISDELAAD LLGERGDGGG GGGGAPRRAA RVVSPVGKVW DVEVGRDDDG DGGGAFLGRG WAEFAAAHGL GMGWFVVVRH EGGGVLTVKL FDTTCCLWDF GARPAVVTTR SGRARDASNK PQFLRVLLPG FMEKMRIPAK FVQHYIAEEH LNIHMASILS PLGKFWRIEL EKDELGMFFK GGWLQFLSFH GISPGDVVLL RHEGNLVFKI KVFGINGCKK DLKTKDDITI QQSARNQHET PSFSTRKCNK NSRFGEDCKN QLQEIPCSIK GSRKKGRETK RPKKSKSIYE IGPPSWIKKE ISNYMLENGN ISLPGIFCKS IGLVEETTIT LMINSSRGRS SSSSSRSWEV ACSVNKNGYG CCNLLPSGWK RFCQANGLLV GDVCTFSVVE ATLWHVAIDR VERS // ID Y4469_ORYSJ Reviewed; 427 AA. AC Q7XS75; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2004, sequence version 2. DT 15-MAR-2017, entry version 48. DE RecName: Full=Putative B3 domain-containing protein Os04g0346900; GN OrderedLocusNames=Os04g0346900, LOC_Os04g27960; GN ORFNames=OSJNBa0020I02.5; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL662963; CAE02098.2; -; Genomic_DNA. DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR SMR; Q7XS75; -. DR PaxDb; Q7XS75; -. DR PRIDE; Q7XS75; -. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR InParanoid; Q7XS75; -. DR Proteomes; UP000059680; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 427 Putative B3 domain-containing protein FT Os04g0346900. FT /FTId=PRO_0000378056. FT DNA_BIND 25 118 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 236 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 320 427 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 8 15 Poly-Gly. SQ SEQUENCE 427 AA; 46596 MW; B7FCC0D1459FE16A CRC64; MGSRGDHGGG GGGRGAARAT QLKVLVPSSF RKMRICDELA AQLGVGVGGG GAPRAATARV ASPLGKAWDV GVVRDGDGRA FLGRGWAEFA AAHGLGVGWF VVLRHGGGVL AVEAFDTTCC LRVFGAPPAE AGRATDTSRK PQFLTVLLPG IMDKMRIPDK FVRDYITGEN LNSNMAIILS PLGKSWRVEL DKDQSGVFLG GGWLQFLSFH GISRGDVVIF RYEGNLVFKI SVFGPNGRQK DFKAKGISIY QGTGEQQEAP SFSRRKCNNK KKSRFGEDDG NQQEMPCSRK GSGNKGRTSD RETKRMRKTR SVYEIGPRSW IKKEINEYVL ERCILSLART FCESIGLVEE SSITLMMIDT TSTQGDQGGS SSSSRSWEVT GRRYKDACYL LGAGWRRFCE DNGVRSGDVC VFTVLDTTLW RVDIERC // ID ARFM_ORYSJ Reviewed; 529 AA. AC Q7XSS9; A0A0P0WGN0; B7F2A9; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2004, sequence version 2. DT 05-JUL-2017, entry version 81. DE RecName: Full=Auxin response factor 13; GN Name=ARF13; OrderedLocusNames=Os04g0690600, LOC_Os04g59430; GN ORFNames=OSJNBa0039K24.27; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL606637; CAE01808.2; -; Genomic_DNA. DR EMBL; AP008210; BAF16267.1; -; Genomic_DNA. DR EMBL; AP014960; BAS91774.1; -; Genomic_DNA. DR EMBL; AK109449; BAG98756.1; -; mRNA. DR RefSeq; XP_015634416.1; XM_015778930.1. DR UniGene; Os.56150; -. DR ProteinModelPortal; Q7XSS9; -. DR SMR; Q7XSS9; -. DR PaxDb; Q7XSS9; -. DR EnsemblPlants; OS04T0690600-01; OS04T0690600-01; OS04G0690600. DR GeneID; 9269399; -. DR Gramene; OS04T0690600-01; OS04T0690600-01; OS04G0690600. DR KEGG; osa:9269399; -. DR eggNOG; ENOG410JSUB; Eukaryota. DR eggNOG; ENOG41108GW; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q7XSS9; -. DR OMA; TNGHNQD; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q7XSS9; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 529 Auxin response factor 13. FT /FTId=PRO_0000299270. FT DNA_BIND 128 234 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 10 23 Poly-Pro. SQ SEQUENCE 529 AA; 57224 MW; 1F6D39376B2EC419 CRC64; MARPPAATAP PPPPPPPPPP PPPIDRLVWL ACAAPLSRIP VVGTQVSYFP EGHAEQCPAP LPDPLPSAHR FFLCTITAVD LSADTTTGEP YATISLLPLR HDAPAPAPAP APAAAELAEA ESQEFRYYAK QLTQSDANNG GGFSVPRLCA DHIFPALNLD DDPPVQSLTM GDLQGDSWEF RHIYRGTPRR HLLTTGWSKF VNAKQLVAGD TVVFMWCGAP APERKLLVGV RRAARYSGES ACNARGRVQP QEVMEAVRLA AEQAAFRVTY YPRHGAGEFV VPRVEVDKGL TTPWRCGMQV RAQVMEAEDT RRLAWLNGTL TNLRHQQIWR TLEVEWDASA ASSSMKNRFV NPWQVQPVDF PPLPMGLKIS NNNISAPVCN GDSLLVPPIL MHPQPQPPAD IQGARHNNGH AYADIPSSST PSMVRTQQLF PRDLQILVPH TDIVTPQNGS PPDNPVNTPL SASDGMKTIQ LFGVTITSPV QGDTNGAFAS AQVNQVPEGV DDETATEEAS DTSLPDSLTN GHNQDGARL // ID REM1_ARATH Reviewed; 517 AA. AC Q84J39; Q9ATC8; Q9SB77; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 07-JUN-2017, entry version 76. DE RecName: Full=B3 domain-containing protein REM1; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 1; DE Short=AtREM1; GN Name=REM1; OrderedLocusNames=At4g31610; ORFNames=F28M20.200; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, TISSUE SPECIFICITY, RP AND DEVELOPMENTAL STAGE. RC STRAIN=cv. Landsberg erecta; TISSUE=Flower meristem; RX PubMed=11842146; DOI=10.1104/pp.010323; RA Franco-Zorrilla J.M., Cubas P., Jarillo J.A., Fernandez-Calvin B., RA Salinas J., Martinez-Zapater J.M.; RT "AtREM1, a member of a new family of B3 domain-containing genes, is RT preferentially expressed in reproductive meristems."; RL Plant Physiol. 128:418-427(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: May play a role in flower development. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:11842146}. CC -!- TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), CC in the inflorescence apex and flowers. CC {ECO:0000269|PubMed:11842146}. CC -!- DEVELOPMENTAL STAGE: Not expressed in stage 1 flower. In stage 2 CC and 3 flowers, expressed in the central area of the floral dome, CC but not in the sepal anlagen. In stage 5 flower, restricted to the CC carpel anlagen. Stage 6, 7 and 8 flowers, expressed in the medial CC ridge. In stage 9 flower, expressed in the septum, style, and CC stigma. Shortly before anthesis expressed in the stigma and CC septum. {ECO:0000269|PubMed:11842146}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA19762.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB79879.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF336344; AAK32148.1; -; mRNA. DR EMBL; AL031004; CAA19762.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161579; CAB79879.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE85936.1; -; Genomic_DNA. DR EMBL; BT003891; AAO41939.1; -; mRNA. DR EMBL; BT005002; AAO50535.1; -; mRNA. DR PIR; T05109; T05109. DR RefSeq; NP_567880.1; NM_119310.4. DR UniGene; At.19035; -. DR ProteinModelPortal; Q84J39; -. DR SMR; Q84J39; -. DR STRING; 3702.AT4G31610.1; -. DR PaxDb; Q84J39; -. DR EnsemblPlants; AT4G31610.1; AT4G31610.1; AT4G31610. DR GeneID; 829288; -. DR Gramene; AT4G31610.1; AT4G31610.1; AT4G31610. DR KEGG; ath:AT4G31610; -. DR Araport; AT4G31610; -. DR TAIR; locus:2124834; AT4G31610. DR eggNOG; ENOG410JT9C; Eukaryota. DR eggNOG; ENOG411082E; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; Q84J39; -. DR OMA; MLELICE; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; Q84J39; -. DR PRO; PR:Q84J39; -. DR Proteomes; UP000006548; Chromosome 4. DR ExpressionAtlas; Q84J39; baseline and differential. DR Genevisible; Q84J39; AT. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEP:UniProtKB. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 517 B3 domain-containing protein REM1. FT /FTId=PRO_0000375095. FT DNA_BIND 7 92 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 162 259 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 285 385 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 109 138 Asp-rich. FT CONFLICT 29 29 L -> F (in Ref. 1; AAK32148). FT {ECO:0000305}. SQ SEQUENCE 517 AA; 58388 MW; FCE6495B53E55081 CRC64; MADPPHFSLF QQKFRTGDKP FLTLDADFLM NHTKVLLKSD ASDKVWKVKL DGGRLSEGWE EFACDQKFRD GDVLVFKHHG DEVFHVAVVS PSVSGDIRNA SSSQVITEDT YIDVDDVDDD DYGQDDEDDD DDDDEGEDNI ENISEKTDKR QEADSSSDHS GFITARVTRY SLLHDRLDLS RNFTLLFGGH QKTCEIDVVD EQGRRWTMKL AKNISSGVFY IRLGWGNFCC ANGLTQGDLC KFKLFQNEER PVLWLCPQES GNGRKEKRTF DEVSKGKEKK TPSPFLIVKY TPSRETTGQL SLPVSFTRNN SINKTGEVIL LNQDGRKWSS YLQITGLGRG AGSEWFYLRR GWREMCEANG VGVNDSFKLE LVWEGANPMF KFCSKIENHE YKGKGNQRTR KKRACETAPQ PRNVKKTPRL GVEGPVYQVD EERGHTQVSN RTNTISGNLQ RLLPPSCSVS DQVANVKQGI VDSLNTVRQC RTELETSEQN LQASLLAIDA LGERIWGISK ILSSNLV // ID Y3896_ARATH Reviewed; 209 AA. AC Q84R27; Q9LJ70; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 07-JUN-2017, entry version 91. DE RecName: Full=B3 domain-containing protein At3g18960; GN OrderedLocusNames=At3g18960; ORFNames=K13E13.7; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10907853; DOI=10.1093/dnares/7.3.217; RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. RT Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC RT and BAC clones."; RL DNA Res. 7:217-221(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB01692.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP000735; BAB01692.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE76174.1; -; Genomic_DNA. DR EMBL; BT006139; AAP04124.1; -; mRNA. DR EMBL; BT008541; AAP40368.1; -; mRNA. DR EMBL; AK229681; BAF01522.1; -; mRNA. DR RefSeq; NP_188526.2; NM_112782.4. DR UniGene; At.34404; -. DR UniGene; At.66475; -. DR ProteinModelPortal; Q84R27; -. DR BioGrid; 6762; 1. DR IntAct; Q84R27; 2. DR STRING; 3702.AT3G18960.1; -. DR iPTMnet; Q84R27; -. DR PaxDb; Q84R27; -. DR EnsemblPlants; AT3G18960.1; AT3G18960.1; AT3G18960. DR GeneID; 821429; -. DR Gramene; AT3G18960.1; AT3G18960.1; AT3G18960. DR KEGG; ath:AT3G18960; -. DR Araport; AT3G18960; -. DR TAIR; locus:2085859; AT3G18960. DR eggNOG; ENOG410JVBR; Eukaryota. DR eggNOG; ENOG411061X; LUCA. DR HOGENOM; HOG000155078; -. DR InParanoid; Q84R27; -. DR OMA; NVSACET; -. DR OrthoDB; EOG093617ZF; -. DR PhylomeDB; Q84R27; -. DR PRO; PR:Q84R27; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q84R27; baseline and differential. DR Genevisible; Q84R27; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 209 B3 domain-containing protein At3g18960. FT /FTId=PRO_0000375143. FT DNA_BIND 29 122 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 209 AA; 24091 MW; 179ED77184F746A4 CRC64; MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE EEDKRVFRG // ID REM17_ARATH Reviewed; 920 AA. AC Q84WP3; Q9LQY4; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 12-APR-2017, entry version 93. DE RecName: Full=B3 domain-containing protein REM17; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 17; GN Name=REM17; OrderedLocusNames=At1g26680; ORFNames=T24P13.6; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF87027.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006535; AAF87027.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE30720.1; -; Genomic_DNA. DR EMBL; BT002947; AAO22760.1; -; mRNA. DR PIR; G86393; G86393. DR RefSeq; NP_173990.2; NM_102431.4. DR UniGene; At.41208; -. DR ProteinModelPortal; Q84WP3; -. DR STRING; 3702.AT1G26680.1; -. DR PaxDb; Q84WP3; -. DR EnsemblPlants; AT1G26680.1; AT1G26680.1; AT1G26680. DR GeneID; 839209; -. DR Gramene; AT1G26680.1; AT1G26680.1; AT1G26680. DR KEGG; ath:AT1G26680; -. DR Araport; AT1G26680; -. DR TAIR; locus:2200620; AT1G26680. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR HOGENOM; HOG000154090; -. DR InParanoid; Q84WP3; -. DR OMA; CQVNRIK; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; Q84WP3; -. DR PRO; PR:Q84WP3; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; Q84WP3; baseline and differential. DR Genevisible; Q84WP3; AT. DR GO; GO:0009507; C:chloroplast; IDA:TAIR. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 6. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 6. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 6. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 920 B3 domain-containing protein REM17. FT /FTId=PRO_0000375111. FT DNA_BIND 12 105 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 153 250 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 361 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 436 531 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 616 714 TF-B3 5. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 727 823 TF-B3 6. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 209 209 M -> T (in Ref. 3; AAO22760). FT {ECO:0000305}. SQ SEQUENCE 920 AA; 104833 MW; 3711DA19B4F2075F CRC64; MADQSLLHSP INPHFFQPIL TESRTHLNIP VAFFSKHVEG RNNQNKTVTL RSDASDKTWL VKMDGLKLTD GWEDFAFAHD LRTGDIVVFR LEGEMVFHVT ALGPSCCEIQ YHTSSHNIND DDRNDQINIA SRNSSRVKKN PRKKVESSLD HSRFVAKVSA WCLSNDRLYI PLSFARLNGL NKINSKKIYL QNEEGRSWKL VLRHDKSGMQ TFVQSGWRRF CSENGIRQGQ YTFKLVRKSA PPVIRLCRAK AKPKQRSVAE YSSDHSCFEG SVTPSSLRND LLYLPRSFVN SNRLDKRCSE IVLKNEQGVK WPLVLKRFKS VTYLPKGWTS FCQVNRIKAG DSFKFKLVGT WKKPVLSLCP TQSNNHKTPL ECSEGNKSEE SEEDCLEVKK KKYWSRCRAS VENMDDDQTN IGNSSRKKRV SKNPREKVES SSDHSSFVGS VNPSSLYKDQ LYLPRNFVSS NFLDKRCSEI VLKNERGEKR TLVLKHFKKD LTFLKKGWTS FCQVNRIKAG DSFKFKLVGT WNKPVLSLCP TETNYHKTPL ACSEGNKSEE SEEEGTEDKN TSQDCLEVKK RKYWSTCRAS AENIDDDQTN IGNSSKEKRV KKNPVKKAES SSDHSSFVAN VTASSLNYDR LYLPLSFVSS NGLDKMNGKE IVLLNEEGLS WKFNLKYNQA GKHTYVRPGW SRFCDANGMS QGQQFTFKLV QKHGPPVMYL SLSEHRPKSE SSSHRSYFVG SVTASSIKKD KLYLWKSFVS SNGLDKGCKK IILKNKWGRE WKLVLKHYKS NCFTIIKRGW TSFCQGNGLK AGDSFKFKLV GTGEKPVLSL CPAESSHEKI PLECPEGIDD VNSLSSNPSS GDDSSRSEES EEENMEDKNI SQDCLETKKR KYCSSSSYSQ NRFVTLTLTR SAFQTYKLVS FFNNYASRLS // ID ARFQ_ARATH Reviewed; 585 AA. AC Q84WU6; B2CTG7; B2CTG8; B2CTH0; Q93ZY5; Q9CA12; Q9SH16; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 05-JUL-2017, entry version 103. DE RecName: Full=Auxin response factor 17; GN Name=ARF17; OrderedLocusNames=At1g77850; ORFNames=F28K19.6, T32E8.16; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 375-533, AND VARIANTS PHE-414 AND RP PRO-518. RC STRAIN=cv. Ag-0, cv. An-1, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1, RC cv. Cvi-1, cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Kas-2, RC cv. Ll-0, cv. Mrk-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, RC cv. Oy-0, cv. Sorbo, cv. Wa-1, cv. Wassilewskija, cv. Wei-0, and RC cv. Wt-5; RX PubMed=18305205; DOI=10.1104/pp.108.116582; RA Ehrenreich I.M., Purugganan M.D.; RT "Sequence variation of microRNAs and their binding sites in RT Arabidopsis."; RL Plant Physiol. 146:1974-1982(2008). RN [5] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF17677.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=AAG51629.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC009243; AAF17677.1; ALT_SEQ; Genomic_DNA. DR EMBL; AC012193; AAG51629.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE36034.1; -; Genomic_DNA. DR EMBL; AY056184; AAL07033.1; -; mRNA. DR EMBL; BT002749; AAO22578.1; -; mRNA. DR EMBL; EU550144; ACB30930.1; -; Genomic_DNA. DR EMBL; EU550145; ACB30931.1; -; Genomic_DNA. DR EMBL; EU550146; ACB30932.1; -; Genomic_DNA. DR EMBL; EU550147; ACB30933.1; -; Genomic_DNA. DR EMBL; EU550148; ACB30934.1; -; Genomic_DNA. DR EMBL; EU550149; ACB30935.1; -; Genomic_DNA. DR EMBL; EU550150; ACB30936.1; -; Genomic_DNA. DR EMBL; EU550151; ACB30937.1; -; Genomic_DNA. DR EMBL; EU550152; ACB30938.1; -; Genomic_DNA. DR EMBL; EU550153; ACB30939.1; -; Genomic_DNA. DR EMBL; EU550154; ACB30940.1; -; Genomic_DNA. DR EMBL; EU550155; ACB30941.1; -; Genomic_DNA. DR EMBL; EU550156; ACB30942.1; -; Genomic_DNA. DR EMBL; EU550157; ACB30943.1; -; Genomic_DNA. DR EMBL; EU550158; ACB30944.1; -; Genomic_DNA. DR EMBL; EU550159; ACB30945.1; -; Genomic_DNA. DR EMBL; EU550160; ACB30946.1; -; Genomic_DNA. DR EMBL; EU550161; ACB30947.1; -; Genomic_DNA. DR EMBL; EU550162; ACB30948.1; -; Genomic_DNA. DR EMBL; EU550163; ACB30949.1; -; Genomic_DNA. DR EMBL; EU550164; ACB30950.1; -; Genomic_DNA. DR EMBL; EU550165; ACB30951.1; -; Genomic_DNA. DR EMBL; EU550166; ACB30952.1; -; Genomic_DNA. DR EMBL; EU550167; ACB30953.1; -; Genomic_DNA. DR PIR; D96808; D96808. DR RefSeq; NP_001322496.1; NM_001334800.1. DR RefSeq; NP_565161.1; NM_106434.2. DR UniGene; At.26363; -. DR ProteinModelPortal; Q84WU6; -. DR SMR; Q84WU6; -. DR BioGrid; 29339; 8. DR IntAct; Q84WU6; 3. DR STRING; 3702.AT1G77850.1; -. DR PaxDb; Q84WU6; -. DR PRIDE; Q84WU6; -. DR EnsemblPlants; AT1G77850.1; AT1G77850.1; AT1G77850. DR GeneID; 844120; -. DR Gramene; AT1G77850.1; AT1G77850.1; AT1G77850. DR KEGG; ath:AT1G77850; -. DR Araport; AT1G77850; -. DR TAIR; locus:2029436; AT1G77850. DR eggNOG; ENOG410IJN8; Eukaryota. DR eggNOG; ENOG410ZJKK; LUCA. DR InParanoid; Q84WU6; -. DR OMA; AGDINHR; -. DR OrthoDB; EOG09360FAD; -. DR PhylomeDB; Q84WU6; -. DR PRO; PR:Q84WU6; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q84WU6; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0000987; F:core promoter proximal region sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0048830; P:adventitious root development; IMP:TAIR. DR GO; GO:0009653; P:anatomical structure morphogenesis; IMP:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; TAS:TAIR. DR GO; GO:0052543; P:callose deposition in cell wall; IMP:TAIR. DR GO; GO:0009555; P:pollen development; IMP:TAIR. DR GO; GO:0010208; P:pollen wall assembly; IMP:TAIR. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 585 Auxin response factor 17. FT /FTId=PRO_0000111521. FT DNA_BIND 119 221 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VARIANT 414 414 Y -> F (in strain: cv. Ag-0, cv. An-1, FT cv. Cvi-0, cv. Edi-0, cv. Kas-2, cv. Ll- FT 0, cv. Nok-3, cv. Wassilewskija, cv. Wei- FT 0 and cv. Wt-5). FT {ECO:0000269|PubMed:18305205}. FT VARIANT 518 518 S -> P (in strain: cv. Ag-0, cv. An-1, FT cv. Cvi-0, cv. Edi-0, cv. Ei-2, cv. Gy-2, FT cv. Kas-2, cv. Ll-0, cv. Mt-0, cv. Nok-3, FT cv. Wassilewskija, cv. Wei-0 and cv. Wt- FT 5). {ECO:0000269|PubMed:18305205}. FT CONFLICT 102 102 R -> Q (in Ref. 3; AAL07033). FT {ECO:0000305}. FT CONFLICT 456 456 G -> R (in Ref. 3; AAL07033). FT {ECO:0000305}. SQ SEQUENCE 585 AA; 63742 MW; C36984B4326B8620 CRC64; MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG // ID Y7282_ORYSJ Reviewed; 267 AA. AC Q84YL3; A0A0P0X4G8; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 15-FEB-2017, entry version 49. DE RecName: Full=Putative B3 domain-containing protein LOC_Os07g12820; GN OrderedLocusNames=Os07g0232100, LOC_Os07g12820; GN ORFNames=OSJNBa0086N05.127; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP005774; BAC55855.1; -; Genomic_DNA. DR EMBL; AP014963; BAT00719.1; -; Genomic_DNA. DR EnsemblPlants; OS07T0232100-00; OS07T0232100-00; OS07G0232100. DR Gramene; OS07T0232100-00; OS07T0232100-00; OS07G0232100. DR InParanoid; Q84YL3; -. DR OMA; MTIGWKE; -. DR OrthoDB; EOG09360OA6; -. DR Proteomes; UP000059680; Chromosome 7. DR Genevisible; Q84YL3; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 267 Putative B3 domain-containing protein FT LOC_Os07g12820. FT /FTId=PRO_0000376974. FT DNA_BIND 4 99 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29863 MW; 4E3E4196354CAF35 CRC64; MHSPTFSMVK IKTASQDYLP IPVAVTKASR LKHGRTLKLM TAHGLKIRVK VAEARDKLYM TIGWKEFIQE AGLKMGESKS VVFRTLSKSR LNVIIFNKEG YSRCPIPDKA AKALINNQSS SAPSFSTKST APRHPSFTNV EANTKRIVKD MCCYNKRMKL SSEVKNYVRD IAQFLDYSSK FYIVTMKNIH EVRQGDGCYN LKAGYGQISH KIIFKEIYSA TSTASQQDTS GKNLHFSLPQ DESVAGNSTS PVNAMFMPCT SNILLLL // ID Y3160_ORYSJ Reviewed; 306 AA. AC Q851V1; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 15-FEB-2017, entry version 69. DE RecName: Full=Putative B3 domain-containing protein Os03g0621600; GN OrderedLocusNames=Os03g0621600, LOC_Os03g42410; GN ORFNames=OSJNBb0111B07.21; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC097280; AAO34499.1; -; Genomic_DNA. DR EMBL; DP000009; ABF97676.1; -; Genomic_DNA. DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR SMR; Q851V1; -. DR PaxDb; Q851V1; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR HOGENOM; HOG000240246; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 306 Putative B3 domain-containing protein FT Os03g0621600. FT /FTId=PRO_0000378046. FT DNA_BIND 29 122 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 306 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 34810 MW; 408F01B4290F6497 CRC64; MVKILKTTLR ATTMLKVLVK IRLSLFLTFS VLCLMPIMYM ASHKTIPNEF LHNFGGKIPK SIKLETRSGL TFDVQVTKNS GRVVLQSGWA SYVSAHDLKI GDFLVFKYSG DSQLKTLIFD SSGCEKVCEK PVDMSGRSYD IAMRNSQDEK KKRKQRDISR QGTVKPSEEG LKAELVPGCI LPSRTDLTRL QKNILIEKVK AINSETPIYG YVMNNSSIHG IPCTVEISKK YADVYLPFED GTVVLQHHGK SWNVRCCLTK QNSKRFLKGW RQFAGDNKLH LGDICLFDLL KDKKKYVMDV HIIRRK // ID Y3216_ORYSJ Reviewed; 1029 AA. AC Q851V5; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 10-MAY-2017, entry version 78. DE RecName: Full=Putative B3 domain-containing protein Os03g0621600; GN OrderedLocusNames=Os03g0621600, LOC_Os03g42370; GN ORFNames=OSJNBb0111B07.17; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF12593.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC097280; AAO34491.1; -; Genomic_DNA. DR EMBL; DP000009; ABF97673.1; -; Genomic_DNA. DR EMBL; AP008209; BAF12593.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR SMR; Q851V5; -. DR PaxDb; Q851V5; -. DR eggNOG; ENOG410JF4G; Eukaryota. DR eggNOG; ENOG410ZPCJ; LUCA. DR HOGENOM; HOG000083518; -. DR InParanoid; Q851V5; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 1029 Putative B3 domain-containing protein FT Os03g0621600. FT /FTId=PRO_0000378050. FT DNA_BIND 147 240 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 339 430 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 450 543 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 731 824 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 934 1029 TF-B3 5. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1029 AA; 118190 MW; 206B6AD0CA4B7645 CRC64; MAPFLASPIR LHPCPLLFSH PHLFGSDYFA FSVKGRGAHL ESMRVENKRG NRSWGTDAKR THPNSIFNQL VRYGYIGTGF PDMNCSLTWS LIGGPSTLSL PSFFPSAHLL LSLALFFFLC IQSNHRMSKS GCERCRGRGF WDTDDQDTYF FKVMIGGFRR QMTIPYKFAE NFRDQIQGTI KLKARNGNTC SVLVDKCSNK LVLTKGWAEF ANSHDIKMGD FLVFRYTGNS QFEVKIFDPS GCVKAASHNA VNIGQHAQNM QGDPIEILSC SDEHLRAQSL TTERQNQPEK DVIDNCNKKM KTEHASSSED DQETPTAEVH RMKVEEMVRA IHSNHPVFVA VMKKSNVTRQ PCYVAISRKY ANEYFPGGDQ MLTLQRHGKR WQVKFCISKR KLRMLSKGWR KFTRDNELQH WAPLALFITL FFSPHFRKMK KCGQKMRKLN TRSTARDDQE KYFFKVMIGD FHKRMTIPDK FARHFKGVIS KTIKLEPRSG YTFDVQVTKK LNILVLGSGW ESFVNAHDLN MGDFLVFKYN GDFLLQVLIF DPSGCEKSTS CSMENAIDHV GQGWKEHNDI STSYHDQPKG NKHWMQKDSS SKGNKIGNTR SSNTPSKFSG CILPRGTCLP VVQEKKMKEK IQAIHSKTPM YGNVMTKCNV SGSPCVLEIT QLYDDAYLPF NNGQELMLRH RDKSWKVRFY RFKNKSRKLT QASSLYKMRR PGARCREGHA HFNGNHIDGQ YKNFFKVMIG RFRERMIIPN EFLQYFRGKI PRTIKLQLRD GCTYDVQVTK NLGKISLQSG WKAFVTAHDL QMGDFLVFSY DGISKLKVLI FGPSGCEKVH SRSTLKNATH CGEKWEEPLH ISSNSHDLPV KSPQNVSKSE KQWDSSEQEN DTANIEEVAL QGDDLQGHPV LNCILPKHTR LTDMQKQQLE SKVGAIHSEI PIYGCILRKS RVHGKSQTVD ICREYADVYL PFKELNMTLQ RHGKNWEVLC RTKDTRTKRL STGWSRFAQE NNLQVGDICL FELLKKKEYS MNVHIIPKK // ID Y3205_ORYSJ Reviewed; 545 AA. AC Q851W4; Q0DQ98; Q10GN4; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 15-MAR-2017, entry version 61. DE RecName: Full=B3 domain-containing protein Os03g0620500; GN OrderedLocusNames=Os03g0620500, LOC_Os03g42290; GN ORFNames=OSJNBb0111B07.8; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q851W4-1; Sequence=Displayed; CC Note=Derived from EST data. No experimental confirmation CC available.; CC Name=2; CC IsoId=Q851W4-2; Sequence=VSP_037443; CC -!- SEQUENCE CAUTION: CC Sequence=BAF12590.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC097280; AAO34495.1; -; Genomic_DNA. DR EMBL; DP000009; ABF97667.1; -; Genomic_DNA. DR EMBL; AP008209; BAF12590.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AK100451; -; NOT_ANNOTATED_CDS; mRNA. DR SMR; Q851W4; -. DR PaxDb; Q851W4; -. DR HOGENOM; HOG000240246; -. DR InParanoid; Q851W4; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q851W4; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Repeat; Transcription; Transcription regulation. FT CHAIN 1 545 B3 domain-containing protein FT Os03g0620500. FT /FTId=PRO_0000376956. FT DNA_BIND 26 119 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 231 331 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 441 542 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 1 196 Missing (in isoform 2). FT {ECO:0000303|PubMed:12869764}. FT /FTId=VSP_037443. FT CONFLICT 242 242 H -> Y (in Ref. 5; AK100451). FT {ECO:0000305}. FT CONFLICT 396 396 Q -> R (in Ref. 5; AK100451). FT {ECO:0000305}. SQ SEQUENCE 545 AA; 62055 MW; 8CDF4187BF31797A CRC64; MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLDQ FGGKISRTVE LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIKNSR RASGVQERNA DPIDVSSSTH DDTVQSSGGE RFARSESGSD SQHSKTAKLA ATCSSGGSEC TGEEAKESSS SEHESSYDLV DPQIAPMPGY VLSRGTNLSQ AHEEKLDMLV QEIRPEIPLY VTTMKHSNVN SHHASLVIAK HYACAYFPHT SQTITLKWHG KNRKWHPKFY IRKDQVGYIL HGRWIDFVRH NHVKEGDICI FHLKNFNGRK FRATVHLLRE TIPHSFGALH IPKRFESRNG RMRLKMTDDR RVSSTECRRG TMEPSTTNVK KEADNEQCNN GQGKRQEPLN FDVSVGSSKP YLTADRVSLT EEQFMKVEEN VHSIQSEGPI YVSIMNKSNV GTDGLYIITL GRQFAIRYLP EGEQTLTLLT TGTGKAWQVK MRPRSGDARM FTLGWRDFVR DNRLQTEDIC LFQLTKNSER GLAMKVHIIR HNERS // ID Y3204_ORYSJ Reviewed; 519 AA. AC Q851W5; Q10GN6; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2003, sequence version 1. DT 07-JUN-2017, entry version 80. DE RecName: Full=B3 domain-containing protein Os03g0620400; GN OrderedLocusNames=Os03g0620400, LOC_Os03g42280; GN ORFNames=OsJ_11757, OSJNBb0111B07.7; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q851W5-1; Sequence=Displayed; CC Note=Derived from EST data. No experimental confirmation CC available.; CC Name=2; CC IsoId=Q851W5-2; Sequence=VSP_037441, VSP_037442; CC Note=No experimental confirmation available.; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC097280; AAO34490.1; -; Genomic_DNA. DR EMBL; DP000009; ABF97664.1; -; Genomic_DNA. DR EMBL; DP000009; ABF97665.1; -; Genomic_DNA. DR EMBL; AP008209; BAF12589.1; -; Genomic_DNA. DR EMBL; AP014959; BAS85303.1; -; Genomic_DNA. DR EMBL; CM000140; EAZ27810.1; -; Genomic_DNA. DR EMBL; AK102169; BAG95422.1; -; mRNA. DR RefSeq; XP_015628610.1; XM_015773124.1. [Q851W5-1] DR RefSeq; XP_015628611.1; XM_015773125.1. [Q851W5-1] DR UniGene; Os.59392; -. DR SMR; Q851W5; -. DR PaxDb; Q851W5; -. DR GeneID; 4333466; -. DR KEGG; osa:4333466; -. DR eggNOG; ENOG410JWZ0; Eukaryota. DR eggNOG; ENOG41104G8; LUCA. DR HOGENOM; HOG000240246; -. DR InParanoid; Q851W5; -. DR OMA; CTICSLF; -. DR Proteomes; UP000059680; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Repeat; Transcription; Transcription regulation. FT CHAIN 1 519 B3 domain-containing protein FT Os03g0620400. FT /FTId=PRO_0000376955. FT DNA_BIND 26 119 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 349 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 416 516 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 1 203 Missing (in isoform 2). FT {ECO:0000303|PubMed:12869764}. FT /FTId=VSP_037441. FT VAR_SEQ 204 265 SYELDDPQMPPGRNYVLSRWTSLSEAQEEKVDMLVQDIQPE FT IPVFVAIMKHSNVNSRRACLV -> MNCAWCMVSCTICSLF FT LSVEKAVKFALVYRPLHNAKFIFSFLYFTSQKYIYSIIFCL FT DQV (in isoform 2). FT {ECO:0000303|PubMed:12869764}. FT /FTId=VSP_037442. SQ SEQUENCE 519 AA; 59045 MW; E3F19E85033138D2 CRC64; MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG CEKVFTCAGI KKTSSVQERN AAPVDISRST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL AETSSSGESG EEGTDSSTSE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS HKRFDLRDGR TWPKVTGVRR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS // ID Y1898_ARATH Reviewed; 101 AA. AC Q8GWU1; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 05-JUL-2017, entry version 75. DE RecName: Full=B3 domain-containing protein At1g08985; GN OrderedLocusNames=At1g08985; ORFNames=F7G19.27; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=11910074; DOI=10.1126/science.1071006; RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., RA Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., RA Shibata K., Shinagawa A., Shinozaki K.; RT "Functional annotation of a full-length Arabidopsis cDNA collection."; RL Science 296:141-145(2002). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC000106; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CP002684; AEE28379.1; -; Genomic_DNA. DR EMBL; AK118638; BAC43235.1; -; mRNA. DR EMBL; BT004683; AAO42929.1; -; mRNA. DR RefSeq; NP_849620.1; NM_179289.2. DR UniGene; At.44246; -. DR ProteinModelPortal; Q8GWU1; -. DR STRING; 3702.AT1G08985.1; -. DR iPTMnet; Q8GWU1; -. DR PaxDb; Q8GWU1; -. DR EnsemblPlants; AT1G08985.1; AT1G08985.1; AT1G08985. DR GeneID; 837419; -. DR Gramene; AT1G08985.1; AT1G08985.1; AT1G08985. DR KEGG; ath:AT1G08985; -. DR Araport; AT1G08985; -. DR TAIR; locus:1005716737; AT1G08985. DR HOGENOM; HOG000155126; -. DR OMA; TKFIFSM; -. DR OrthoDB; EOG09361ASA; -. DR PhylomeDB; Q8GWU1; -. DR PRO; PR:Q8GWU1; -. DR Proteomes; UP000006548; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 101 B3 domain-containing protein At1g08985. FT /FTId=PRO_0000375127. FT DNA_BIND 7 101 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 98 98 I -> V (in Ref. 3; BAC43235 and 4; FT AAO42929). {ECO:0000305}. SQ SEQUENCE 101 AA; 11732 MW; C0BC7EB4BEE90CB2 CRC64; MDPNMMIVKT LSETDCSHDN KLILPRDKVE NIVRSTGVPV PRMGIQVEIL DNTNSYWVNL RQSQRGYFIG RGWGELRDAR NLKAGDVIKL YWQNTKFIFS M // ID Y2608_ARATH Reviewed; 244 AA. AC Q8GYJ2; Q9SIH6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 05-JUL-2017, entry version 86. DE RecName: Full=B3 domain-containing protein At2g36080; DE AltName: Full=Protein AUXIN RESPONSIVE FACTOR 31; GN Name=ARF31; OrderedLocusNames=At2g36080; ORFNames=F9C22.1; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=11910074; DOI=10.1126/science.1071006; RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., RA Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., RA Shibata K., Shinagawa A., Shinozaki K.; RT "Functional annotation of a full-length Arabidopsis cDNA collection."; RL Science 296:141-145(2002). RN [4] RP NUCLEOTIDE SEQUENCE [MRNA] OF 16-244 (ISOFORM 2). RC STRAIN=cv. Columbia; RA Carabelli M., Ciarbelli A.R., Ruzza V., Sessa G., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the putative Arabidopsis ARF31."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q8GYJ2-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8GYJ2-2; Sequence=VSP_037330, VSP_037331; CC Note=May be due to an intron retention. No experimental CC confirmation available.; CC -!- SEQUENCE CAUTION: CC Sequence=AAD26965.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=AAM15343.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=CAD29643.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007017; AAM15343.1; ALT_INIT; Genomic_DNA. DR EMBL; AC007135; AAD26965.1; ALT_INIT; Genomic_DNA. DR EMBL; CP002685; AEC09203.1; -; Genomic_DNA. DR EMBL; CP002685; AEC09204.1; -; Genomic_DNA. DR EMBL; CP002685; ANM62123.1; -; Genomic_DNA. DR EMBL; AK117587; BAC42244.1; -; mRNA. DR EMBL; AJ441075; CAD29643.1; ALT_INIT; mRNA. DR PIR; F84776; F84776. DR RefSeq; NP_001324302.1; NM_001336587.1. [Q8GYJ2-2] DR RefSeq; NP_181152.2; NM_129167.3. [Q8GYJ2-2] DR RefSeq; NP_850260.1; NM_179929.3. [Q8GYJ2-1] DR UniGene; At.23308; -. DR ProteinModelPortal; Q8GYJ2; -. DR SMR; Q8GYJ2; -. DR BioGrid; 3525; 2. DR STRING; 3702.AT2G36080.1; -. DR PaxDb; Q8GYJ2; -. DR EnsemblPlants; AT2G36080.1; AT2G36080.1; AT2G36080. [Q8GYJ2-1] DR GeneID; 818181; -. DR Gramene; AT2G36080.1; AT2G36080.1; AT2G36080. [Q8GYJ2-1] DR KEGG; ath:AT2G36080; -. DR Araport; AT2G36080; -. DR TAIR; locus:2039165; AT2G36080. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q8GYJ2; -. DR OMA; NLECEVD; -. DR OrthoDB; EOG09360P7Z; -. DR PhylomeDB; Q8GYJ2; -. DR PRO; PR:Q8GYJ2; -. DR Proteomes; UP000006548; Chromosome 2. DR ExpressionAtlas; Q8GYJ2; baseline and differential. DR Genevisible; Q8GYJ2; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:TAIR. DR GO; GO:0080167; P:response to karrikin; IEP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 244 B3 domain-containing protein At2g36080. FT /FTId=PRO_0000375134. FT DNA_BIND 38 144 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 18 27 Poly-Gln. FT COMPBIAS 146 152 Poly-Ser. FT VAR_SEQ 170 173 AQAV -> TLFI (in isoform 2). FT {ECO:0000303|Ref.4}. FT /FTId=VSP_037330. FT VAR_SEQ 174 244 Missing (in isoform 2). FT {ECO:0000303|Ref.4}. FT /FTId=VSP_037331. SQ SEQUENCE 244 AA; 28435 MW; 5602781B6B12166F CRC64; MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS // ID REM14_ARATH Reviewed; 490 AA. AC Q8GYM4; Q9SJA0; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 08-FEB-2011, sequence version 2. DT 07-JUN-2017, entry version 89. DE RecName: Full=B3 domain-containing protein REM14; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 14; GN Name=REM14; OrderedLocusNames=At2g24645; ORFNames=F25P17.5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=11910074; DOI=10.1126/science.1071006; RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., RA Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., RA Shibata K., Shinagawa A., Shinozaki K.; RT "Functional annotation of a full-length Arabidopsis cDNA collection."; RL Science 296:141-145(2002). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD23895.1; Type=Erroneous gene model prediction; Note=The predicted gene At2g24650 has been split into 2 genes: At2g24645 and At2g24650.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006954; AAD23895.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC07609.1; -; Genomic_DNA. DR EMBL; AK117514; BAC42177.1; -; mRNA. DR PIR; C84639; C84639. DR RefSeq; NP_001189594.1; NM_001202665.2. DR ProteinModelPortal; Q8GYM4; -. DR STRING; 3702.AT2G24645.1; -. DR PaxDb; Q8GYM4; -. DR PRIDE; Q8GYM4; -. DR EnsemblPlants; AT2G24645.1; AT2G24645.1; AT2G24645. DR GeneID; 10723071; -. DR Gramene; AT2G24645.1; AT2G24645.1; AT2G24645. DR KEGG; ath:AT2G24645; -. DR Araport; AT2G24645; -. DR TAIR; locus:6530298182; AT2G24645. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR HOGENOM; HOG000154088; -. DR OMA; CFLANIW; -. DR OrthoDB; EOG09360P97; -. DR PRO; PR:Q8GYM4; -. DR Proteomes; UP000006548; Chromosome 2. DR ExpressionAtlas; Q8GYM4; baseline and differential. DR Genevisible; Q8GYM4; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 490 B3 domain-containing protein REM14. FT /FTId=PRO_0000375108. FT DNA_BIND 3 95 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 130 226 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 333 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 387 484 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 336 336 E -> K (in Ref. 3; BAC42177). FT {ECO:0000305}. SQ SEQUENCE 490 AA; 55530 MW; 85F74ACC3A4C34A4 CRC64; MANQHFFKPL LPGFHTHLRI PVAFFLKNIE GRYEQKTAEL RSDASKITWE VKIDGQRLTD GWKEFALSHD LRIGDIVVFR QERDMSFHVT MLGPSCCEIQ YGSCSDEERN LEKKKNPNGE AKSSSLDPSC FSANVAPSSL RYDLMLFPMG FVRENGVVGS GKIVLMNEKG RSWNFNLRQK PSCGTVYVRG GWVSFCDANG LQAGDIYTFK LIKRGGTLVL RLLPKGAESC SLDPSCFVAN VAPSTLRYDT LYLPKRFMRE NGVDKRRGEM ILMNEKGKSW TLDLKLKKSC GTSLIRRGWR SFCSANGLRA GSIITFKLIK KSGTLVLCLL SNEPEEEVCS EANEVESLST DQESHEESSH NEKISRRKEK KGRMIWKASS SPSENRFVTL NLTPYNILRS ALRLPIPFTR MNGINEETKM TLLDKHGMKW LTTLRLVDYK RKRLGMVGGW KGFIQANGVK ANESIMLELI WEEETSCVLK FCSKVKLAIK // ID REM7_ARATH Reviewed; 251 AA. AC Q8H2D0; O81781; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 05-JUL-2017, entry version 99. DE RecName: Full=B3 domain-containing protein REM7; DE AltName: Full=Auxin response factor 25; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 7; GN Name=REM7; Synonyms=ARF25; OrderedLocusNames=At4g31660; GN ORFNames=F28M20.150; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; TISSUE=Flower; RA Carabelli M.; RT "Nucleotide sequence of the putative Arabidopsis ARF25."; RL Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA19757.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB79884.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL031004; CAA19757.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161579; CAB79884.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE85942.1; -; Genomic_DNA. DR EMBL; AJ515263; CAD56215.1; -; mRNA. DR PIR; T05104; T05104. DR RefSeq; NP_194894.2; NM_119315.6. DR UniGene; At.31728; -. DR ProteinModelPortal; Q8H2D0; -. DR STRING; 3702.AT4G31660.1; -. DR PaxDb; Q8H2D0; -. DR EnsemblPlants; AT4G31660.1; AT4G31660.1; AT4G31660. DR GeneID; 829294; -. DR Gramene; AT4G31660.1; AT4G31660.1; AT4G31660. DR KEGG; ath:AT4G31660; -. DR Araport; AT4G31660; -. DR TAIR; locus:2124794; AT4G31660. DR HOGENOM; HOG000154088; -. DR InParanoid; Q8H2D0; -. DR OMA; CRRAYHD; -. DR OrthoDB; EOG093616T3; -. DR PhylomeDB; Q8H2D0; -. DR PRO; PR:Q8H2D0; -. DR Proteomes; UP000006548; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 251 B3 domain-containing protein REM7. FT /FTId=PRO_0000375101. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 251 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 251 AA; 28758 MW; F6AFA2650E21B0A0 CRC64; MADPVLQSPK NSHFFQPLLP GFDSYLNIPV KFFSKRIQGR NEGRTVELRT DASEKTWQVK IQGRRLTVGW KEFASAHDFR VGDIIVFRHE GSLVFHVTAL GPSCCEIQYV PSCNNQENIS NLSMKQSIKT ELESSLDEDK VNMGKFPRKK HVKKRIPEAE AKSFSSDKSC FVAHVTDSNL REDTLFLPRK FDRSDGLIKG SNKIVLMNEE ARTWTLILKF RNSSRTFYMR GGWTSFSMSM GLNLEIPSRL N // ID REM8_ARATH Reviewed; 462 AA. AC Q8H2D1; O81779; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 05-JUL-2017, entry version 100. DE RecName: Full=B3 domain-containing protein REM8; DE AltName: Full=Auxin response factor 24; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 8; GN Name=REM8; Synonyms=ARF24; OrderedLocusNames=At4g31680; GN ORFNames=F28M20.130; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; TISSUE=Flower; RA Carabelli M.; RT "Nucleotide sequence of the putative Arabidopsis ARF24."; RL Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA19755.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB79886.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL031004; CAA19755.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161579; CAB79886.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE85944.1; -; Genomic_DNA. DR EMBL; AJ515262; CAD56214.1; -; mRNA. DR PIR; T05102; T05102. DR RefSeq; NP_194896.2; NM_119317.3. DR UniGene; At.31724; -. DR ProteinModelPortal; Q8H2D1; -. DR SMR; Q8H2D1; -. DR STRING; 3702.AT4G31680.1; -. DR PaxDb; Q8H2D1; -. DR EnsemblPlants; AT4G31680.1; AT4G31680.1; AT4G31680. DR GeneID; 829296; -. DR Gramene; AT4G31680.1; AT4G31680.1; AT4G31680. DR KEGG; ath:AT4G31680; -. DR Araport; AT4G31680; -. DR TAIR; locus:2124824; AT4G31680. DR eggNOG; ENOG410JJRZ; Eukaryota. DR eggNOG; ENOG410ZEPY; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; Q8H2D1; -. DR OMA; FFLISIR; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; Q8H2D1; -. DR PRO; PR:Q8H2D1; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q8H2D1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 462 B3 domain-containing protein REM8. FT /FTId=PRO_0000375102. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 148 243 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 249 346 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 462 AA; 52025 MW; FCAB20E827D1F5E4 CRC64; MANASQLSPT NKHFFKPLLP GFQRNLNIPV KFFSEHIEGK HEGETVKLRA DASKRTWEVK MDGNRLTEGW KEFVEAHDLR IRDFVVFRHE GDMVFHVTAL GPSCCEIQYP QSISHEEGEE SGEVEISERE VEENLQKEYD QSSADLNCFS QSVTHSNISN DLVTLPRDFA KRNGLDKGMH EIVLMNEEGK SWESEVRSRM SGQVFIVGGW KSLCSENKLK GGDSCTFKLL QNAKTPVFQL CSRIGESRFV KLTPTLNSLE IGKQHLPVSF TKGNGLIHPG EIILVDKDRV EWSMKLQVDN RGGMHIFGGN DWKSFCAANE VGAGESLTLE LIRGGLSPLF KFFSKIEQPS FEAEDRRHKR ARVHNGSQET DKGEPSRATK MGPELEKREK TAEKGEPSRA SNKSSGKQGN LQKTQACSVT DHVAKVKESV VDTLTSIRRF QAELETMEQK LEDSLQEINK LS // ID Y7833_ORYSJ Reviewed; 762 AA. AC Q8H506; A0A0P0X325; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 15-MAR-2017, entry version 67. DE RecName: Full=B3 domain-containing protein Os07g0183300/Os07g0183600; GN OrderedLocusNames=Os07g0183350, LOC_Os07g08540; GN ORFNames=OJ1046_F10.105, OJ1506_G02.22; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003835; BAD30344.1; -; Genomic_DNA. DR EMBL; AP003861; BAC24871.1; -; Genomic_DNA. DR EMBL; AP014963; BAT00342.1; -; Genomic_DNA. DR SMR; Q8H506; -. DR PaxDb; Q8H506; -. DR EnsemblPlants; OS07T0183350-00; OS07T0183350-00; OS07G0183350. DR Gramene; OS07T0183350-00; OS07T0183350-00; OS07G0183350. DR HOGENOM; HOG000084466; -. DR InParanoid; Q8H506; -. DR OMA; VDGHAEQ; -. DR OrthoDB; EOG0936037F; -. DR Proteomes; UP000059680; Chromosome 7. DR Genevisible; Q8H506; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0009725; P:response to hormone; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 762 B3 domain-containing protein FT Os07g0183300/Os07g0183600. FT /FTId=PRO_0000376978. FT DNA_BIND 124 223 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 443 542 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 2 9 Poly-Ala. SQ SEQUENCE 762 AA; 85036 MW; B61AD8DF90A7F5F7 CRC64; MAAAAAALAD DGDGIVDRAM WLACAAPNSG RLPAVGSMVF YFVDGHAEQF CQFPAPLLEQ LAVPGPRVFL CTVAAVRLRA DALTNEAYAD ITLDPVADHD VPRLLPAPAP AAAAGGQQQQ LRYFVKTLMS SDAEYRDRFA VPMDVAKDVF PPLVDAKAVQ PLIVKDLQGS PMTFDYGRNG NRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL PVAVQEVIAA AGRAAAGEQF TATYRSRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA PPPPLSPKRL KSSEQCPSRP PEPLPGRVFL CKVTAVRLDA TRNELFATMS LIPVARDQAI QPQAPADPGP SSPQVQTTLV SFVKPLTCTD AVKNRYRFIV PKRETAMGVL PQLQLNEHVP LYIKDMHGKE WVINYTWKEY THMLSSGWIK FANANRLVTG DNVVFMRSMD SGERYMGLRR TLKPEPVSVD EVIEAVWRAA RLEPFEVTYL SRQDGDEFVV PCGIVHNALR AKFTPGMVVN FVWAVEEDRL PNVGPQGKVI AIENYATSIW RMIQVEWPSC AGMNRYVNFW QIREVLGESS FEASTCIVRS QDYSPAPQRN LVNALQLPDG TKQLQQNKKS VSSSSTFRLF GKKMTPGVPP RRDTSGLSGQ VSLFSHYLPH DEDDGQVPTM RQRLETLFPD NI // ID Y7832_ORYSJ Reviewed; 407 AA. AC Q8H507; A0A0P0X390; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 10-MAY-2017, entry version 78. DE RecName: Full=B3 domain-containing protein Os07g0183200; GN OrderedLocusNames=Os07g0183200, LOC_Os07g08530; GN ORFNames=OJ1046_F10.104, OJ1506_G02.21; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003835; BAD30343.1; -; Genomic_DNA. DR EMBL; AP003861; BAC24870.1; -; Genomic_DNA. DR EMBL; AP008213; BAF20967.1; -; Genomic_DNA. DR EMBL; AP014963; BAT00341.1; -; Genomic_DNA. DR EMBL; AK064661; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015646443.1; XM_015790957.1. DR UniGene; Os.52071; -. DR PaxDb; Q8H507; -. DR PRIDE; Q8H507; -. DR EnsemblPlants; OS07T0183200-01; OS07T0183200-01; OS07G0183200. DR GeneID; 4342576; -. DR Gramene; OS07T0183200-01; OS07T0183200-01; OS07G0183200. DR KEGG; osa:4342576; -. DR HOGENOM; HOG000242169; -. DR OMA; HRENRAG; -. DR OrthoDB; EOG09360CVW; -. DR Proteomes; UP000059680; Chromosome 7. DR Genevisible; Q8H507; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 407 B3 domain-containing protein FT Os07g0183200. FT /FTId=PRO_0000376977. FT DNA_BIND 124 227 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 19 19 D -> G (in Ref. 4; AK064661). FT {ECO:0000305}. FT CONFLICT 314 314 I -> V (in Ref. 4; AK064661). FT {ECO:0000305}. SQ SEQUENCE 407 AA; 44622 MW; 603A285602809EC0 CRC64; MAAAAAPLAD DGDGIVDRDM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAAAAGGQQ LRYFVKTLMI SDFDFRIRFS APMADAKGVF PPLVDAKAVQ PLLVKDLHGS PMTFDYGRKG KRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDDDDGELY VGVRRQRTLE RPLRNTMRRY RPPTPPQAAV QEAVLAAAGH AAAGERFTVA YRSRKDGDEF VVPREAVEEG LRARLTSLAE VEFVWAVEDG APPIVGPRGK VTAIATGQLW RNLEIVWDGN SEMDMSANFW QVRPVEEVDI SPSTPPPKRL KNCEIDDTAS TSVSVDNGDE QVPTMRQRLE ALIPDNI // ID VRN1_ARATH Reviewed; 341 AA. AC Q8L3W1; Q9LJ67; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2002, sequence version 1. DT 07-JUN-2017, entry version 94. DE RecName: Full=B3 domain-containing transcription factor VRN1; DE AltName: Full=Protein VERNALIZATION 1; GN Name=VRN1; OrderedLocusNames=At3g18990; ORFNames=K13E13.10; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], FUNCTION, SUBCELLULAR RP LOCATION, AND TISSUE SPECIFICITY. RC STRAIN=cv. Landsberg erecta; RX PubMed=12114624; DOI=10.1126/science.1072147; RA Levy Y.Y., Mesnage S., Mylne J.S., Gendall A.R., Dean C.; RT "Multiple roles of Arabidopsis VRN1 in vernalization and flowering RT time control."; RL Science 297:243-246(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10907853; DOI=10.1093/dnares/7.3.217; RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. RT Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC RT and BAC clones."; RL DNA Res. 7:217-221(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Shinn P., Chen H., Kim C.J., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Involved in the regulation of vernalization. Acts as CC transcriptional repressor of FLC, a major target of the CC vernalization pathway. Binds DNA in vitro in a non-sequence- CC specific manner. {ECO:0000269|PubMed:12114624}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:12114624}. CC -!- TISSUE SPECIFICITY: Expressed in roots and at lower levels in CC aerial parts. {ECO:0000269|PubMed:12114624}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB01695.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF289051; AAM76972.1; -; Genomic_DNA. DR EMBL; AF289052; AAM76973.1; -; mRNA. DR EMBL; AP000735; BAB01695.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE76178.1; -; Genomic_DNA. DR EMBL; BT024731; ABD59069.1; -; mRNA. DR EMBL; AK230388; BAF02186.1; -; mRNA. DR EMBL; AB493620; BAH30458.1; -; mRNA. DR RefSeq; NP_188529.2; NM_112785.5. DR UniGene; At.24480; -. DR UniGene; At.27524; -. DR PDB; 4I1K; X-ray; 1.60 A; A/B=208-341. DR PDBsum; 4I1K; -. DR ProteinModelPortal; Q8L3W1; -. DR SMR; Q8L3W1; -. DR BioGrid; 6765; 2. DR IntAct; Q8L3W1; 1. DR STRING; 3702.AT3G18990.1; -. DR iPTMnet; Q8L3W1; -. DR PaxDb; Q8L3W1; -. DR DNASU; 821432; -. DR EnsemblPlants; AT3G18990.1; AT3G18990.1; AT3G18990. DR GeneID; 821432; -. DR Gramene; AT3G18990.1; AT3G18990.1; AT3G18990. DR KEGG; ath:AT3G18990; -. DR Araport; AT3G18990; -. DR TAIR; locus:2085849; AT3G18990. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR HOGENOM; HOG000005864; -. DR InParanoid; Q8L3W1; -. DR OMA; DGRSKFS; -. DR OrthoDB; EOG09360FU4; -. DR PhylomeDB; Q8L3W1; -. DR PRO; PR:Q8L3W1; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q8L3W1; baseline and differential. DR Genevisible; Q8L3W1; AT. DR GO; GO:0005654; C:nucleoplasm; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IDA:UniProtKB. DR GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR. DR GO; GO:0009909; P:regulation of flower development; IMP:UniProtKB. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0010048; P:vernalization response; IMP:TAIR. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Repeat; Transcription; Transcription regulation. FT CHAIN 1 341 B3 domain-containing transcription factor FT VRN1. FT /FTId=PRO_0000375120. FT DNA_BIND 5 98 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 338 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT HELIX 224 236 {ECO:0000244|PDB:4I1K}. FT STRAND 243 247 {ECO:0000244|PDB:4I1K}. FT HELIX 250 252 {ECO:0000244|PDB:4I1K}. FT HELIX 263 269 {ECO:0000244|PDB:4I1K}. FT STRAND 275 281 {ECO:0000244|PDB:4I1K}. FT STRAND 284 293 {ECO:0000244|PDB:4I1K}. FT STRAND 296 299 {ECO:0000244|PDB:4I1K}. FT HELIX 303 309 {ECO:0000244|PDB:4I1K}. FT STRAND 317 322 {ECO:0000244|PDB:4I1K}. FT STRAND 324 327 {ECO:0000244|PDB:4I1K}. FT STRAND 329 335 {ECO:0000244|PDB:4I1K}. SQ SEQUENCE 341 AA; 39275 MW; E40ABFB2C8CC3114 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V // ID ARFA_ARATH Reviewed; 665 AA. AC Q8L7G0; O23664; DT 13-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 13-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 122. DE RecName: Full=Auxin response factor 1; GN Name=ARF1; OrderedLocusNames=At1g59750; ORFNames=F23H11.7; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=9188533; DOI=10.1126/science.276.5320.1865; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "ARF1, a transcription factor that binds to auxin response elements."; RL Science 276:1865-1868(1997). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [6] RP TRANSCRIPTIONAL REPRESSOR. RX PubMed=10318972; DOI=10.1073/pnas.96.10.5844; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Activation and repression of transcription by auxin-response RT factors."; RL Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999). RN [7] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [8] RP FUNCTION, AND DEVELOPMENTAL STAGE. RX PubMed=16176952; DOI=10.1242/dev.02012; RA Ellis C.M., Nagpal P., Young J.C., Hagen G., Guilfoyle T.J., RA Reed J.W.; RT "AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence RT and floral organ abscission in Arabidopsis thaliana."; RL Development 132:4563-4574(2005). RN [9] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Seems to CC act as transcriptional repressor. Formation of heterodimers with CC Aux/IAA proteins may alter their ability to modulate early auxin CC response genes expression. Promotes flowering, stamen development, CC floral organ abscission and fruit dehiscence. Acts as repressor of CC IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, CC ECO:0000269|PubMed:16176952}. CC -!- SUBUNIT: Homodimers and heterodimers. Interacts with the auxin- CC responsive proteins IAA12, IAA13, IAA17 and with ARF2. CC -!- INTERACTION: CC Self; NbExp=4; IntAct=EBI-2324259, EBI-2324259; CC Q9SN12:F3A4.140; NbExp=2; IntAct=EBI-2324259, EBI-2324225; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q8L7G0-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8L7G0-2; Sequence=VSP_010077; CC Note=May be due to a competing acceptor splice site. No CC experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078}. CC -!- DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young CC flower buds. At stage 10 of flower development, expression in the CC carpels becomes restricted to the style. Also expressed in anthers CC and filaments. At stage 13, expressed in the region at the top of CC the pedicel, including the abscission zone. CC {ECO:0000269|PubMed:16176952}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U83245; AAC49751.1; -; mRNA. DR EMBL; AC007258; AAD39318.1; -; Genomic_DNA. DR EMBL; CP002684; AEE33612.1; -; Genomic_DNA. DR EMBL; CP002684; AEE33613.1; -; Genomic_DNA. DR EMBL; CP002684; AEE33614.1; -; Genomic_DNA. DR EMBL; AY133723; AAM91657.1; -; mRNA. DR EMBL; BT002748; AAO22577.1; -; mRNA. DR PIR; D96621; D96621. DR RefSeq; NP_001031208.1; NM_001036131.3. [Q8L7G0-1] DR RefSeq; NP_176184.1; NM_104668.4. [Q8L7G0-1] DR RefSeq; NP_849830.1; NM_179499.2. [Q8L7G0-2] DR UniGene; At.74832; -. DR PDB; 4LDV; X-ray; 1.45 A; A=1-355. DR PDB; 4LDW; X-ray; 2.67 A; A/B=1-355. DR PDB; 4LDX; X-ray; 2.90 A; A/B=1-355. DR PDB; 4LDY; X-ray; 2.30 A; A/B=1-355. DR PDBsum; 4LDV; -. DR PDBsum; 4LDW; -. DR PDBsum; 4LDX; -. DR PDBsum; 4LDY; -. DR ProteinModelPortal; Q8L7G0; -. DR SMR; Q8L7G0; -. DR BioGrid; 27493; 16. DR IntAct; Q8L7G0; 16. DR MINT; MINT-7712748; -. DR STRING; 3702.AT1G59750.1; -. DR iPTMnet; Q8L7G0; -. DR PaxDb; Q8L7G0; -. DR EnsemblPlants; AT1G59750.1; AT1G59750.1; AT1G59750. [Q8L7G0-1] DR EnsemblPlants; AT1G59750.3; AT1G59750.3; AT1G59750. [Q8L7G0-1] DR GeneID; 842268; -. DR Gramene; AT1G59750.1; AT1G59750.1; AT1G59750. [Q8L7G0-1] DR Gramene; AT1G59750.3; AT1G59750.3; AT1G59750. [Q8L7G0-1] DR KEGG; ath:AT1G59750; -. DR Araport; AT1G59750; -. DR TAIR; locus:2025991; AT1G59750. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q8L7G0; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR PhylomeDB; Q8L7G0; -. DR PRO; PR:Q8L7G0; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; Q8L7G0; baseline and differential. DR Genevisible; Q8L7G0; AT. DR GO; GO:0005634; C:nucleus; ISS:TAIR. DR GO; GO:0003677; F:DNA binding; IDA:TAIR. DR GO; GO:0042802; F:identical protein binding; IPI:IntAct. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IGI:TAIR. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEP:TAIR. DR GO; GO:0009733; P:response to auxin; IEP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW 3D-structure; Alternative splicing; Auxin signaling pathway; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Repressor; Transcription; Transcription regulation. FT CHAIN 1 665 Auxin response factor 1. FT /FTId=PRO_0000111505. FT DOMAIN 542 635 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 124 226 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 344 412 Pro-rich. FT VAR_SEQ 390 392 Missing (in isoform 2). FT {ECO:0000303|PubMed:14593172}. FT /FTId=VSP_010077. FT CONFLICT 136 136 H -> Q (in Ref. 4; AAM91657). FT {ECO:0000305}. FT HELIX 17 28 {ECO:0000244|PDB:4LDV}. FT STRAND 40 43 {ECO:0000244|PDB:4LDV}. FT HELIX 45 52 {ECO:0000244|PDB:4LDV}. FT STRAND 54 56 {ECO:0000244|PDB:4LDV}. FT STRAND 71 84 {ECO:0000244|PDB:4LDV}. FT STRAND 86 88 {ECO:0000244|PDB:4LDY}. FT STRAND 91 99 {ECO:0000244|PDB:4LDV}. FT STRAND 121 127 {ECO:0000244|PDB:4LDV}. FT HELIX 130 133 {ECO:0000244|PDB:4LDV}. FT STRAND 134 137 {ECO:0000244|PDB:4LDV}. FT STRAND 139 141 {ECO:0000244|PDB:4LDV}. FT HELIX 143 149 {ECO:0000244|PDB:4LDV}. FT STRAND 157 159 {ECO:0000244|PDB:4LDV}. FT STRAND 161 167 {ECO:0000244|PDB:4LDV}. FT STRAND 173 181 {ECO:0000244|PDB:4LDV}. FT TURN 182 185 {ECO:0000244|PDB:4LDV}. FT STRAND 186 189 {ECO:0000244|PDB:4LDV}. FT HELIX 193 199 {ECO:0000244|PDB:4LDV}. FT STRAND 207 213 {ECO:0000244|PDB:4LDV}. FT STRAND 218 221 {ECO:0000244|PDB:4LDV}. FT HELIX 239 256 {ECO:0000244|PDB:4LDV}. FT STRAND 260 264 {ECO:0000244|PDB:4LDV}. FT TURN 266 268 {ECO:0000244|PDB:4LDV}. FT STRAND 274 276 {ECO:0000244|PDB:4LDV}. FT HELIX 277 285 {ECO:0000244|PDB:4LDV}. FT STRAND 293 297 {ECO:0000244|PDB:4LDV}. FT STRAND 301 304 {ECO:0000244|PDB:4LDY}. FT STRAND 307 316 {ECO:0000244|PDB:4LDV}. FT STRAND 321 323 {ECO:0000244|PDB:4LDV}. FT STRAND 331 337 {ECO:0000244|PDB:4LDV}. FT STRAND 345 347 {ECO:0000244|PDB:4LDV}. FT HELIX 349 351 {ECO:0000244|PDB:4LDV}. SQ SEQUENCE 665 AA; 73668 MW; 79DD3180C2091401 CRC64; MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR // ID REM20_ARATH Reviewed; 286 AA. AC Q8LAV5; Q9LFI6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2002, sequence version 1. DT 12-APR-2017, entry version 76. DE RecName: Full=B3 domain-containing protein REM20; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 20; GN Name=REM20; OrderedLocusNames=At3g53310; ORFNames=F4P12.10; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130713; DOI=10.1038/35048706; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.; RT "Arabidopsis ORF clone."; RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., RA Feldmann K.A.; RT "Full-length cDNA from Arabidopsis thaliana."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAB67638.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL132966; CAB67638.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE79067.1; -; Genomic_DNA. DR EMBL; BT025724; ABF82627.1; -; mRNA. DR EMBL; AB493647; BAH30485.1; -; mRNA. DR EMBL; AY087586; AAM65128.1; -; mRNA. DR PIR; T45871; T45871. DR RefSeq; NP_566984.1; NM_115191.4. DR UniGene; At.47486; -. DR ProteinModelPortal; Q8LAV5; -. DR SMR; Q8LAV5; -. DR STRING; 3702.AT3G53310.1; -. DR PaxDb; Q8LAV5; -. DR EnsemblPlants; AT3G53310.1; AT3G53310.1; AT3G53310. DR GeneID; 824499; -. DR Gramene; AT3G53310.1; AT3G53310.1; AT3G53310. DR KEGG; ath:AT3G53310; -. DR Araport; AT3G53310; -. DR TAIR; locus:2083921; AT3G53310. DR eggNOG; ENOG410JJ8V; Eukaryota. DR eggNOG; ENOG41119ZM; LUCA. DR HOGENOM; HOG000097078; -. DR InParanoid; Q8LAV5; -. DR OMA; VECELLH; -. DR OrthoDB; EOG09360YM3; -. DR PhylomeDB; Q8LAV5; -. DR PRO; PR:Q8LAV5; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q8LAV5; baseline and differential. DR Genevisible; Q8LAV5; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 286 B3 domain-containing protein REM20. FT /FTId=PRO_0000375113. FT DNA_BIND 9 102 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 137 150 Poly-Asp. SQ SEQUENCE 286 AA; 32618 MW; E99208501B9ECE43 CRC64; MADDSELYPR FFKVFLVESA SESLMIPLPF MAFLADPLPK TVKLQGLGGK LWTVSLKKIS GAAYLTRGWP KFAEEHELKN GEFMTFVYDG HRTFEVSVFD RWGSKEVRAE IQAIPLSDSD SDSVVEDEKD STDVVEDDDD EDEDEDEDDD GSFDEDEEIS QSLYPIDEET ATDAAVFEGN LDVEALTNPH FPTTLKNRIY ELLIPANVVK DNNLEFGSSI KYIDGEGTLV GLRGKWADKR VCFKGWDRIC RRNRLKKHQD TVECELLHDD QKMVHSIRVH VLRRDA // ID Y3209_ORYSJ Reviewed; 311 AA. AC Q8LMR9; A0A0P0VSB0; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2002, sequence version 1. DT 07-JUN-2017, entry version 78. DE RecName: Full=B3 domain-containing protein Os03g0120900; GN OrderedLocusNames=Os03g0120900, LOC_Os03g02900; ORFNames=OJ1705B08.4; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16109971; DOI=10.1101/gr.3869505; RG The rice chromosome 3 sequencing consortium; RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., RA Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., RA Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., RA Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., RA Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., RA de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., RA Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., RA Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., RA Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., RA Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., RA Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., RA Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., RA Lee H.R., Jiang J., Jackson S.; RT "Sequence, annotation, and analysis of synteny between rice chromosome RT 3 and diverged grass species."; RL Genome Res. 15:1284-1291(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC105363; AAM52315.1; -; Genomic_DNA. DR EMBL; DP000009; ABF93697.1; -; Genomic_DNA. DR EMBL; AP008209; BAF10706.1; -; Genomic_DNA. DR EMBL; AP014959; BAS82026.1; -; Genomic_DNA. DR EMBL; AK106367; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015628752.1; XM_015773266.1. DR UniGene; Os.31989; -. DR SMR; Q8LMR9; -. DR PaxDb; Q8LMR9; -. DR PRIDE; Q8LMR9; -. DR EnsemblPlants; OS03T0120900-01; OS03T0120900-01; OS03G0120900. DR GeneID; 4331436; -. DR Gramene; OS03T0120900-01; OS03T0120900-01; OS03G0120900. DR KEGG; osa:4331436; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q8LMR9; -. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000059680; Chromosome 3. DR Genevisible; Q8LMR9; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 311 B3 domain-containing protein FT Os03g0120900. FT /FTId=PRO_0000378049. FT DNA_BIND 37 142 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 176 186 Poly-Ala. FT COMPBIAS 294 300 Poly-Ser. FT CONFLICT 3 3 F -> S (in Ref. 5; AK106367). FT {ECO:0000305}. FT CONFLICT 62 62 Y -> H (in Ref. 5; AK106367). FT {ECO:0000305}. SQ SEQUENCE 311 AA; 33772 MW; 8938BC6AD0D0DC51 CRC64; MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA AAAAGARFLL PPSSTPIYDH HRRHAHAVGY DAYAAATSRQ VLFYRPLPPQ QQHHPAVVLE SVPVRMTAGH AEPPSAPSKR VRLFGVNLDC ANSEQDHAGV VGKTAPPPLP SPPSSSSSSS GKARCSLNLD L // ID Y1071_ORYSJ Reviewed; 312 AA. AC Q8LNN8; A0A0P0XX29; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2002, sequence version 1. DT 05-JUL-2017, entry version 72. DE RecName: Full=Putative B3 domain-containing protein Os10g0537100; GN OrderedLocusNames=Os10g0537100, LOC_Os10g39190; GN ORFNames=OSJNBa0040D23.9; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12791992; DOI=10.1126/science.1083523; RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., RA Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., RA Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H., RA Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., RA Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., RA De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., RA Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., RA Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., RA Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., RA Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., RA Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., RA Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., RA Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., RA Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., RA Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., RA Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., RA Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.; RT "In-depth view of structure, activity, and evolution of rice RT chromosome 10."; RL Science 300:1566-1569(2003). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC074196; AAM76357.1; -; Genomic_DNA. DR EMBL; DP000086; AAP54816.1; -; Genomic_DNA. DR EMBL; AP014966; BAT11829.1; -; Genomic_DNA. DR RefSeq; XP_015613852.1; XM_015758366.1. DR SMR; Q8LNN8; -. DR PaxDb; Q8LNN8; -. DR EnsemblPlants; OS10T0537100-00; OS10T0537100-00; OS10G0537100. DR GeneID; 107278273; -. DR Gramene; OS10T0537100-00; OS10T0537100-00; OS10G0537100. DR KEGG; osa:107278273; -. DR eggNOG; ENOG410JXVN; Eukaryota. DR eggNOG; ENOG41103M7; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q8LNN8; -. DR OMA; WVEKEHM; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000059680; Chromosome 10. DR Genevisible; Q8LNN8; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 312 Putative B3 domain-containing protein FT Os10g0537100. FT /FTId=PRO_0000376985. FT DNA_BIND 35 153 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 68 84 Gly-rich. FT COMPBIAS 170 179 His-rich. SQ SEQUENCE 312 AA; 33125 MW; 7EE91FD2DF58BF0B CRC64; MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAERY FPLDAAAGAG GGGGGGGGGG GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGSFM FPPTAAPPSH SHHHHQRHHP PLPSVPLCPW RDYTTAYGGG YGYGYGGGST PASSRHVLFL RPQVPAAVVL KSVPVHVAAT SAVQEAATTT RPKRVRLFGV NLDCPAAMDD DDDIAGAASR TAASSLLQLP SPSSSTSSST AGKKMCSLDL GL // ID ARFS_ARATH Reviewed; 1086 AA. AC Q8RYC8; O49961; Q5IRX3; Q9LMA4; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 121. DE RecName: Full=Auxin response factor 19; DE AltName: Full=Auxin-responsive protein IAA22; GN Name=ARF19; Synonyms=IAA22; OrderedLocusNames=At1g19220; GN ORFNames=T29M8.9; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], SUBUNIT, SUBCELLULAR LOCATION, AND DOMAIN. RC STRAIN=cv. Columbia; TISSUE=Etiolated seedling; RX PubMed=9342315; DOI=10.1073/pnas.94.22.11786; RA Kim J., Harter K., Theologis A.; RT "Protein-protein interactions among the Aux/IAA proteins."; RL Proc. Natl. Acad. Sci. U.S.A. 94:11786-11791(1997). RN [2] RP SEQUENCE REVISION. RA Arima K., Overvoorde P.J., Theologis A.; RL Submitted (JAN-2005) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA]. RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [7] RP NUCLEOTIDE SEQUENCE [MRNA] OF 809-1086. RC STRAIN=cv. Columbia; RA Ciarbelli A.R., Carabelli M., Ruzza V., Sessa G., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the Arabidopsis IAA22."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [8] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [9] RP FUNCTION, AND INDUCTION. RX PubMed=16461383; DOI=10.1104/pp.105.070987; RA Li J., Dai X., Zhao Y.; RT "A role for auxin response factor 19 in auxin and ethylene signaling RT in Arabidopsis."; RL Plant Physiol. 140:899-908(2006). RN [10] RP FUNCTION. RX PubMed=17259263; DOI=10.1105/tpc.106.047761; RA Okushima Y., Fukaki H., Onoda M., Theologis A., Tasaka M.; RT "ARF7 and ARF19 regulate lateral root formation via direct activation RT of LBD/ASL genes in Arabidopsis."; RL Plant Cell 19:118-130(2007). RN [11] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. Involved in CC ethylene responses. Regulates lateral root formation through CC direct regulation of LBD16 and/or LBD29. Functionally redundant CC with ARF7. {ECO:0000269|PubMed:12036261, CC ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. CC -!- SUBUNIT: Homodimers and heterodimers. Interacts with the auxin- CC responsive protein IAA1. {ECO:0000269|PubMed:9342315}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:9342315}. CC -!- INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. {ECO:0000269|PubMed:9342315}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF82232.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; U53672; AAB91321.2; -; mRNA. DR EMBL; AY008390; AAG35176.1; -; Genomic_DNA. DR EMBL; AY669794; AAT67078.1; -; mRNA. DR EMBL; AC069143; AAF82232.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE29819.1; -; Genomic_DNA. DR EMBL; AB493467; BAH30305.1; -; mRNA. DR EMBL; AJ441312; CAD29695.1; -; mRNA. DR PIR; G86325; G86325. DR RefSeq; NP_173356.1; NM_101780.4. DR UniGene; At.10488; -. DR ProteinModelPortal; Q8RYC8; -. DR SMR; Q8RYC8; -. DR BioGrid; 23744; 26. DR DIP; DIP-33547N; -. DR IntAct; Q8RYC8; 24. DR STRING; 3702.AT1G19220.1; -. DR PaxDb; Q8RYC8; -. DR EnsemblPlants; AT1G19220.1; AT1G19220.1; AT1G19220. DR GeneID; 838505; -. DR Gramene; AT1G19220.1; AT1G19220.1; AT1G19220. DR KEGG; ath:AT1G19220; -. DR Araport; AT1G19220; -. DR TAIR; locus:2202205; AT1G19220. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q8RYC8; -. DR OMA; QGLWNSQ; -. DR OrthoDB; EOG093602IX; -. DR PhylomeDB; Q8RYC8; -. DR PRO; PR:Q8RYC8; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q8RYC8; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IDA:TAIR. DR GO; GO:0046983; F:protein dimerization activity; IDA:UniProtKB. DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0048527; P:lateral root development; IGI:TAIR. DR GO; GO:0010311; P:lateral root formation; IGI:TAIR. DR GO; GO:0048366; P:leaf development; IGI:TAIR. DR GO; GO:0009733; P:response to auxin; IMP:TAIR. DR GO; GO:0009723; P:response to ethylene; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 1086 Auxin response factor 19. FT /FTId=PRO_0000111523. FT DOMAIN 958 1051 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 483 724 Gln-rich. SQ SEQUENCE 1086 AA; 120576 MW; 202C0944581E0545 CRC64; MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR // ID REM16_ARATH Reviewed; 337 AA. AC Q8RYD1; Q9SZA5; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2002, sequence version 1. DT 07-JUN-2017, entry version 82. DE RecName: Full=B3 domain-containing protein REM16; DE AltName: Full=Auxin response factor 36; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 16; GN Name=REM16; Synonyms=ARF36; OrderedLocusNames=At4g33280; GN ORFNames=F17M5.40; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Sessa G., Carabelli M., Ciarbelli A.R., Ruzza V., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the putative Arabidopsis ARF36."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAB38786.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB80045.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AJ441117; CAD29616.1; -; mRNA. DR EMBL; AL035678; CAB38786.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161583; CAB80045.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE86201.1; -; Genomic_DNA. DR PIR; T05979; T05979. DR RefSeq; NP_195054.2; NM_119482.4. DR UniGene; At.31598; -. DR ProteinModelPortal; Q8RYD1; -. DR SMR; Q8RYD1; -. DR STRING; 3702.AT4G33280.1; -. DR PaxDb; Q8RYD1; -. DR EnsemblPlants; AT4G33280.1; AT4G33280.1; AT4G33280. DR GeneID; 829464; -. DR Gramene; AT4G33280.1; AT4G33280.1; AT4G33280. DR KEGG; ath:AT4G33280; -. DR Araport; AT4G33280; -. DR TAIR; locus:2119166; AT4G33280. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR HOGENOM; HOG000154089; -. DR InParanoid; Q8RYD1; -. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360MM8; -. DR PhylomeDB; Q8RYD1; -. DR PRO; PR:Q8RYD1; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q8RYD1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005773; C:vacuole; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 337 B3 domain-containing protein REM16. FT /FTId=PRO_0000375110. FT DNA_BIND 22 116 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 223 321 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38760 MW; 8CA7E445600DA3CB CRC64; MEENCEDCMK WEEELYWTHF QTLHFTQLLL PGFHNRLVIP RKFSTHCKRK LPQIVTLKSP SGVTYNVGVE EDDEKTMAFR FGWDKFVKDH SLEENDLLVF KFHGVSEFEV LVFDGQTLCE KPTSYFVRKC GHAEKTKASH TGYEQEEHIN SDIDTASAQL PVISPTSTVR VSEGKYPLSG FKKMRRELSN DNLDQKADVE MISAGSNKKA LSLAKRAISP DGFLVFMKRS HVVSKCFLTI PYKWCVKNML ITRQEVVMQV DQTKWEMKFN IFGARGSGGI STGWKKFVQD NNLREGDVCV FEPANSETKP LHLNVYIFRG EETERTNNVD PVYTISE // ID Y3158_ARATH Reviewed; 267 AA. AC Q8RYD3; A0A1I9LT58; Q3EB83; Q9CAX0; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2002, sequence version 1. DT 05-JUL-2017, entry version 87. DE RecName: Full=B3 domain-containing protein At3g11580; DE AltName: Full=Protein AUXIN RESPONSE FACTOR 32; GN Name=ARF32; OrderedLocusNames=At3g11580; ORFNames=F24K9.25; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RA Carabelli M., Ciarbelli A.R., Ruzza V., Sessa G., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the putative Arabidopsis ARF32."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130713; DOI=10.1038/35048706; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=cv. Columbia; RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases. RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q8RYD3-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8RYD3-2; Sequence=VSP_037334, VSP_037335; CC Note=May be due to an intron retention. No experimental CC confirmation available.; CC -!- SEQUENCE CAUTION: CC Sequence=AAG51450.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AJ441076; CAD29644.1; -; mRNA. DR EMBL; AC008153; AAG51450.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE75068.1; -; Genomic_DNA. DR EMBL; CP002686; AEE75069.1; -; Genomic_DNA. DR EMBL; CP002686; ANM65766.1; -; Genomic_DNA. DR EMBL; CP002686; ANM65767.1; -; Genomic_DNA. DR EMBL; AK175281; BAD43044.1; -; mRNA. DR EMBL; BT029371; ABK32185.1; -; mRNA. DR RefSeq; NP_001319524.1; NM_001337938.1. [Q8RYD3-2] DR RefSeq; NP_001327713.1; NM_001337940.1. [Q8RYD3-2] DR RefSeq; NP_187765.2; NM_111991.5. [Q8RYD3-1] DR RefSeq; NP_850559.1; NM_180228.3. [Q8RYD3-2] DR UniGene; At.39724; -. DR ProteinModelPortal; Q8RYD3; -. DR SMR; Q8RYD3; -. DR STRING; 3702.AT3G11580.1; -. DR PaxDb; Q8RYD3; -. DR EnsemblPlants; AT3G11580.1; AT3G11580.1; AT3G11580. [Q8RYD3-1] DR EnsemblPlants; AT3G11580.2; AT3G11580.2; AT3G11580. [Q8RYD3-2] DR EnsemblPlants; AT3G11580.4; AT3G11580.4; AT3G11580. [Q8RYD3-2] DR EnsemblPlants; AT3G11580.5; AT3G11580.5; AT3G11580. [Q8RYD3-2] DR GeneID; 820331; -. DR Gramene; AT3G11580.1; AT3G11580.1; AT3G11580. [Q8RYD3-1] DR Gramene; AT3G11580.2; AT3G11580.2; AT3G11580. [Q8RYD3-2] DR Gramene; AT3G11580.4; AT3G11580.4; AT3G11580. [Q8RYD3-2] DR Gramene; AT3G11580.5; AT3G11580.5; AT3G11580. [Q8RYD3-2] DR KEGG; ath:AT3G11580; -. DR Araport; AT3G11580; -. DR TAIR; locus:2080782; AT3G11580. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q8RYD3; -. DR OMA; VNLECHG; -. DR OrthoDB; EOG09360P7Z; -. DR PhylomeDB; Q8RYD3; -. DR PRO; PR:Q8RYD3; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q8RYD3; baseline and differential. DR Genevisible; Q8RYD3; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IPI:TAIR. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IPI:TAIR. DR GO; GO:0019760; P:glucosinolate metabolic process; IMP:TAIR. DR GO; GO:0080113; P:regulation of seed growth; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 267 B3 domain-containing protein At3g11580. FT /FTId=PRO_0000375137. FT DNA_BIND 29 143 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 194 230 AVVDHAQSIPPVVAGSSRTVRLFGVNLECHGDAVEPP -> FT KFKPFISSFVFSFSLIYMSDLYSSLFSFKICLFHKNR (in FT isoform 2). {ECO:0000303|Ref.5}. FT /FTId=VSP_037334. FT VAR_SEQ 231 267 Missing (in isoform 2). FT {ECO:0000303|Ref.5}. FT /FTId=VSP_037335. SQ SEQUENCE 267 AA; 30217 MW; D3FFC59FF28EE865 CRC64; MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM NISFAGEALE QVGDGRG // ID Y1934_ORYSJ Reviewed; 393 AA. AC Q8RZX9; A0A0N7KDJ9; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2002, sequence version 1. DT 07-JUN-2017, entry version 92. DE RecName: Full=AP2/ERF and B3 domain-containing protein Os01g0693400; GN OrderedLocusNames=Os01g0693400, LOC_Os01g49830; ORFNames=P0034C09.44; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RG The rice full-length cDNA consortium; RT "Oryza sativa full length cDNA."; RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000255|PROSITE-ProRule:PRU00366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003450; BAB84620.1; -; Genomic_DNA. DR EMBL; AP008207; BAF05860.1; -; Genomic_DNA. DR EMBL; AP014957; BAS73825.1; -; Genomic_DNA. DR EMBL; AK241984; BAH01166.1; -; mRNA. DR RefSeq; XP_015622542.1; XM_015767056.1. DR UniGene; Os.8019; -. DR ProteinModelPortal; Q8RZX9; -. DR SMR; Q8RZX9; -. DR IntAct; Q8RZX9; 4. DR STRING; 39947.LOC_Os01g49830.1; -. DR PaxDb; Q8RZX9; -. DR PRIDE; Q8RZX9; -. DR EnsemblPlants; OS01T0693400-01; OS01T0693400-01; OS01G0693400. DR GeneID; 4325650; -. DR Gramene; OS01T0693400-01; OS01T0693400-01; OS01G0693400. DR KEGG; osa:4325650; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; Q8RZX9; -. DR KO; K09287; -. DR OMA; QAAFKKQ; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q8RZX9; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 393 AP2/ERF and B3 domain-containing protein FT Os01g0693400. FT /FTId=PRO_0000377732. FT DNA_BIND 81 136 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 216 327 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 64 75 Poly-Gly. SQ SEQUENCE 393 AA; 41181 MW; 4EBC1C3DC880E307 CRC64; MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG RVCGGGGGGA GGAGGKLPSS KFKGVVPQPN GRWGAQIYER HQRVWLGTFA GEDDAARAYD VAAQRFRGRD AVTNFRPLAE ADPDAAAELR FLATRSKAEV VDMLRKHTYF DELAQSKRTF AASTPSAATT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTAPAPV EQMAGCKRAR DLAATTPPQA AAFKKQCIEL ALV // ID Y1235_ORYSJ Reviewed; 402 AA. AC Q8S2E6; C7IXR6; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2002, sequence version 1. DT 07-JUN-2017, entry version 74. DE RecName: Full=B3 domain-containing protein Os01g0723500; GN OrderedLocusNames=Os01g0723500, LOC_Os01g52514; ORFNames=P0022F10.16; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP003229; BAB89497.1; -; Genomic_DNA. DR EMBL; AP008207; BAH91276.1; -; Genomic_DNA. DR EMBL; AP014957; BAS74110.1; -; Genomic_DNA. DR RefSeq; XP_015614236.1; XM_015758750.1. DR ProteinModelPortal; Q8S2E6; -. DR SMR; Q8S2E6; -. DR PaxDb; Q8S2E6; -. DR EnsemblPlants; OS01T0723500-00; OS01T0723500-00; OS01G0723500. DR GeneID; 9268171; -. DR Gramene; OS01T0723500-00; OS01T0723500-00; OS01G0723500. DR KEGG; osa:9268171; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR HOGENOM; HOG000082821; -. DR InParanoid; Q8S2E6; -. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q8S2E6; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 402 B3 domain-containing protein FT Os01g0723500. FT /FTId=PRO_0000378042. FT DNA_BIND 18 121 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 381 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 402 AA; 44783 MW; CFCA1F234BC35F76 CRC64; MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR TACEREDLMG GGGGDRPRKK RGRPRTAAAS RDAARPKKDS VGKEMVTYRA SPSGGQPLQI VDSSWTPEPG STAVKNEEDA DELPVCELPA SSASPPRHVP EGALDADGGA ARRGAAKTRS LQDDLALASI PPSIRRYKGY VSRRRAVATA ERQRATEIAH AFRSPLPYCV IRMSTMHVYY SFMMRFPTGF SRQHLPRERT DVVLRDPGGK VWSVLYIPNT RDRLSRGWCA FARGNCLEEG DYCVFELVAA AEFRVHIFRV VEPAVPAVRL RRVTVTCGRG PT // ID REML1_ARATH Reviewed; 777 AA. AC Q8S8E8; F4IQL4; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 21-SEP-2011, sequence version 2. DT 05-JUL-2017, entry version 83. DE RecName: Full=B3 domain-containing protein REM-like 1; DE AltName: Full=Protein REPRODUCTIVE MERISTEM-like 1; GN OrderedLocusNames=At2g24690; ORFNames=F25P17.1; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAM15334.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC006954; AAM15334.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC07616.1; -; Genomic_DNA. DR PIR; G84639; G84639. DR RefSeq; NP_180045.5; NM_128030.5. DR UniGene; At.39119; -. DR ProteinModelPortal; Q8S8E8; -. DR STRING; 3702.AT2G24690.1; -. DR PaxDb; Q8S8E8; -. DR EnsemblPlants; AT2G24690.1; AT2G24690.1; AT2G24690. DR GeneID; 817005; -. DR Gramene; AT2G24690.1; AT2G24690.1; AT2G24690. DR KEGG; ath:AT2G24690; -. DR Araport; AT2G24690; -. DR TAIR; locus:2046618; AT2G24690. DR eggNOG; ENOG410JW9P; Eukaryota. DR eggNOG; ENOG411054U; LUCA. DR InParanoid; Q8S8E8; -. DR OMA; DICREYA; -. DR OrthoDB; EOG09360BFM; -. DR PRO; PR:Q8S8E8; -. DR Proteomes; UP000006548; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 777 B3 domain-containing protein REM-like 1. FT /FTId=PRO_0000412838. FT DNA_BIND 97 193 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 347 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 582 676 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 683 777 TF-B3 4. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 777 AA; 87156 MW; 730CB732EC0AE5CB CRC64; MANSLILGSP INPEGEMMIQ FSNNHDNNIE FQRRKKMKKN NPETETDSSS DLSCFVAQTG ALLHLPQGFT SSNGSNRECR KSPRPIISSY SSSEKQFVTF TLAPVDGRHC RLRLPMQFTR ENGINKPGKI YLVGKDGSKW LANLLLENNR GRMTLGDGWK SFVKANGLKT GDTYTFKLLW EDTTPVLSLC FEEYNTDTRV GEESSKESLP AEPSSQEKIV KDDNNKDESS TWKREGNHLR CKDSTSPSQN CTLTVTITPD SLEHGRLRLP LQFMTENSMN KPGEITLLGT DGAKWMASLL LEKKGRMSLG KGWKDFAKAN GLKTGDSITL EPIWEDRTPV LSIKSSSGKG QSEFSKESLS IKPSSGNMTK KVENNREASR KYPPRSRESS SAIQNQFMAL TPLRDIVSQV AHDLSIGEVI NFRHKGDNML RVSDLGSNCC GVQDLLAPSS NYDHDNISNI SMKINPHIRK EAVTFSSYDG YAHDNFEPPS KKKVKKNNPE MEADYLSDHS CFVSHVTTSS LHTNALSLEV KESLPIEPSI KPNISEDDNN KEEDIIEENS SFEREKNHWI CIDSISSSQN RFLTLTITPD SLKHGRLRLP LQFMIENSMN KPGEITVLGK DGAKWLVSLL LERRGRMSLD ASSGQETREA EKNREESSSL WELEKRTYCP RKRDSSSDVK NRFLTLTLAP EDVKDGNLHL PCQFMRINGI NKPGQITLLG RGGMKWFAYL LSGDGTVVVG NGWKGFCEAN GVMLGETFVL EFIPKDDTNH VFKFYTK // ID ARFK_ORYSJ Reviewed; 955 AA. AC Q8S983; Q0J9A4; Q7XM09; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2002, sequence version 1. DT 05-JUL-2017, entry version 94. DE RecName: Full=Auxin response factor 11; DE AltName: Full=OsARF5; DE AltName: Full=OsMP; DE AltName: Full=Protein MONOPTEROS-like; GN Name=ARF11; Synonyms=ARF5, MP; GN OrderedLocusNames=Os04g0664400, LOC_Os04g56850; GN ORFNames=OSJNBa0084K01.22; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447439; DOI=10.1038/nature01183; RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., RA Han B.; RT "Sequence and analysis of rice chromosome 4."; RL Nature 420:316-320(2002). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAE04850.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB071292; BAB85912.1; -; mRNA. DR EMBL; AL606999; CAE04850.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP008210; BAF16083.2; -; Genomic_DNA. DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR ProteinModelPortal; Q8S983; -. DR SMR; Q8S983; -. DR STRING; 39947.LOC_Os04g56850.1; -. DR PaxDb; Q8S983; -. DR eggNOG; ENOG410IH2Q; Eukaryota. DR eggNOG; ENOG410Y913; LUCA. DR InParanoid; Q8S983; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000059680; Chromosome 4. DR Genevisible; Q8S983; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 955 Auxin response factor 11. FT /FTId=PRO_0000299267. FT DOMAIN 852 936 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 143 245 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105224 MW; A8436A93FAC13A2A CRC64; MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRATRQQTM LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVIPVARYN KATYMQPSVG MRFAMMFETE ESSKRRYTGT VVGISDYDPM RWPNSKWRNL QVEWDEHGYG ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVSVP GMEIGSANMS SFPRAQGNPY GSLQHIPAVG SELAIMLLNQ SGQTLGSPLS FHQSSYSSII QNVKQNYIPP LTVSTSACLT KQESLPSDDA QHQFHMANMQ NGDLEGSEVQ PVIDSISESK LNATSRDPRN TDSYTSRSTS EQNSKGEPRG KTRRSKKGLP HKTVSEKSDL SSAPSWICDN QQVGLESKLV GCDEQVNCGN IEDSSGALTQ GNFVGQPHGH QVEQKGVLSP PKVESSKSPD GGKSVNSFPN QGCFSQFIDG LDWMTQPSYY QDSNVIQPAG VSENIFSSSA DIPPSMIADT METFQASCLS DCLPNSIQEF ISSPDLNSLT FLSPDMQNLE VQLQHDGSNL PSTSNSFVQM SFSEESASQS ANLSGLHMES THRSINTTSC SQPMSTGGFD AGMYSKLPRL KESQILSLPE IHTNSMGTSA CSMDATEYSL DRSAKPMKPP VRTYTKVQKQ GSVGRSIDVT GFRNYHELRS AIACMFGLQG KLEHPGSSEW KLVYVDYEND VLLVGDDPWE EFINCVRCIR ILSPSEVQQM SENGMHVLND CIQAA // ID ARFO_ORYSJ Reviewed; 712 AA. AC Q8S985; A0A0P0WQX2; B7E789; B9FLM0; Q0DFY3; Q6AUG6; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2002, sequence version 1. DT 05-JUL-2017, entry version 82. DE RecName: Full=Auxin response factor 15; DE AltName: Full=ETTIN-like protein 1; DE AltName: Full=OsETTIN1; GN Name=ARF15; OrderedLocusNames=Os05g0563400, LOC_Os05g48870; GN ORFNames=OsJ_018762, OSJNBb0053D02.5; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=11922106; DOI=10.1266/ggs.76.373; RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.; RT "Auxin response factor family in rice."; RL Genes Genet. Syst. 76:373-380(2001). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y; RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., RA Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.; RT "A fine physical map of the rice chromosome 5."; RL Mol. Genet. Genomics 274:337-345(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 343-712. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). RN [8] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAT77393.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAG88236.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB071290; BAB85910.1; -; mRNA. DR EMBL; AC124143; AAT77393.1; ALT_SEQ; Genomic_DNA. DR EMBL; AP008211; BAH93251.1; -; Genomic_DNA. DR EMBL; AP014961; BAS95343.1; -; Genomic_DNA. DR EMBL; CM000142; EEE64694.1; -; Genomic_DNA. DR EMBL; AK062170; BAG88236.1; ALT_INIT; mRNA. DR RefSeq; XP_015640263.1; XM_015784777.1. DR UniGene; Os.11036; -. DR ProteinModelPortal; Q8S985; -. DR SMR; Q8S985; -. DR STRING; 39947.LOC_Os05g48870.1; -. DR PaxDb; Q8S985; -. DR EnsemblPlants; OS05T0563400-01; OS05T0563400-01; OS05G0563400. DR GeneID; 9268260; -. DR Gramene; OS05T0563400-01; OS05T0563400-01; OS05G0563400. DR KEGG; osa:9268260; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q8S985; -. DR KO; K14486; -. DR OMA; PGVVNKW; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000059680; Chromosome 5. DR ExpressionAtlas; Q8S985; baseline and differential. DR Genevisible; Q8S985; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 712 Auxin response factor 15. FT /FTId=PRO_0000299272. FT DNA_BIND 142 244 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 71 80 Poly-Ala. SQ SEQUENCE 712 AA; 78080 MW; F7F696991A46710A CRC64; MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACAGPVAPL PRKGGVVVYL PQGHLEHLGD APAAAAAAAA VPPHVFCRVV DVTLLADAAT DEVYAQLSLV PEKEEVARRA DDGEGEDGDG MKQRFARMPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHST EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGV RRAAQLKNGS AFPALYNQCS NLGTLANVAH AVATESVFNI YYNPRLSQSE FIVPYWKFMK SLSQPFSVGL RFKMRYESED ATERRYTGII TGSGDTDPMW HGSKWKCLLV RWDDDAEFRR PNRVSPWEIE LTSSVSGSHL STPHSKRLKP CLPHVNPEYM VPRGGGCPDF AESAQFHKVL QGQELLGFKS HGGTAAATSQ PCEARHLQYI DERSCSSDAS NSILGVPRLG DRAPLGNPGF SYHCSGFGES HRLQKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH GRAAFHGPPA LALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RVIDISTMDM MI // ID REM3_ARATH Reviewed; 492 AA. AC Q8VZQ9; Q9SB78; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2002, sequence version 1. DT 05-JUL-2017, entry version 85. DE RecName: Full=B3 domain-containing protein REM3; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 3; GN Name=REM3; OrderedLocusNames=At4g31620; ORFNames=F28M20.190; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA19761.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g31620 has been split into 2 genes: At4g31615 and At4g31620.; Evidence={ECO:0000305}; CC Sequence=CAB79880.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g31620 has been split into 2 genes: At4g31615 and At4g31620.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL031004; CAA19761.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161579; CAB79880.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE85938.1; -; Genomic_DNA. DR EMBL; AY063930; AAL36286.1; -; mRNA. DR EMBL; AY133753; AAM91687.1; -; mRNA. DR PIR; T05108; T05108. DR RefSeq; NP_001320106.1; NM_001342100.1. DR UniGene; At.27141; -. DR ProteinModelPortal; Q8VZQ9; -. DR SMR; Q8VZQ9; -. DR STRING; 3702.AT4G31620.1; -. DR iPTMnet; Q8VZQ9; -. DR PaxDb; Q8VZQ9; -. DR GeneID; 829290; -. DR KEGG; ath:AT4G31620; -. DR Araport; AT4G31620; -. DR TAIR; locus:2124849; AT4G31620. DR eggNOG; ENOG410JX38; Eukaryota. DR eggNOG; ENOG41104C4; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; Q8VZQ9; -. DR OMA; RRTHASH; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; Q8VZQ9; -. DR PRO; PR:Q8VZQ9; -. DR Proteomes; UP000006548; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 492 B3 domain-containing protein REM3. FT /FTId=PRO_0000375097. FT DNA_BIND 12 104 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 154 250 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 382 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 116 132 Asp-rich. SQ SEQUENCE 492 AA; 55712 MW; B7387F2AE4C06B1E CRC64; MANHPLSSSR SNRPFFVRSL AGHTSNLIIP DEFFTAHLEG KTGLTKLKLT SDASDRIWDV RLNGRRFAGG WDDFSAAHCL RDDDVLVFRL DVKMVFHVTP SGRSFSQIRT SSSSGDYDSD DDDDEAGDDD SDSKNISLKK KSRFEAESSS SEKYCLLGLT ASNLRLNRVS FTKHFSRANG LTKRCCMIDL MNLSGESWTL GLRHNKRTGQ AFIRGRWRSF CHANELKPGS FYRFKLVRNG TRPLLQLCFK VIPQGNCSNS KANGKANVSE KYSREDGSAS TKQNKFLTVT LKHYMIQSGQ LRLRRSFVRE NGIKEAEEII LVDKNGVEWP SYVSSSKQRR EFYMAHGWIR FCEANKLKTG ETFTLEFVRG EGTTPMLKFC SEAKIEQEEA PEERGTPLPK RARVSAEVGH SRRTQAPNKS SDDPKILQRK QPLQPCSFSD QAKKVKQSIV NILTGIKRFR SELELKERNL EAALLEIDAL GDKVSEINKI LK // ID VAL1_ARATH Reviewed; 790 AA. AC Q8W4L5; O04346; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2002, sequence version 1. DT 07-JUN-2017, entry version 104. DE RecName: Full=B3 domain-containing transcription repressor VAL1; DE AltName: Full=Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2; DE AltName: Full=Protein VP1/ABI3-LIKE 1; GN Name=VAL1; Synonyms=HSI2; OrderedLocusNames=At2g30470; GN ORFNames=T6B20.17; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND TISSUE RP SPECIFICITY. RC STRAIN=cv. Columbia; RX PubMed=15894743; DOI=10.1104/pp.104.057752; RA Tsukagoshi H., Saijo T., Shibata D., Morikami A., Nakamura K.; RT "Analysis of a sugar response mutant of Arabidopsis identified a novel RT B3 domain protein that functions as an active transcriptional RT repressor."; RL Plant Physiol. 138:675-685(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP FUNCTION. RX PubMed=17158584; DOI=10.1104/pp.106.092320; RA Suzuki M., Wang H.H.-Y., McCarty D.R.; RT "Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant RT embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes."; RL Plant Physiol. 143:902-911(2007). RN [6] RP FUNCTION. RX PubMed=17267611; DOI=10.1073/pnas.0607940104; RA Tsukagoshi H., Morikami A., Nakamura K.; RT "Two B3 domain transcriptional repressors prevent sugar-inducible RT expression of seed maturation genes in Arabidopsis seedlings."; RL Proc. Natl. Acad. Sci. U.S.A. 104:2543-2547(2007). RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [8] RP INTERACTION WITH SNL1. RX PubMed=19962994; DOI=10.1016/j.jmb.2009.11.065; RA Bowen A.J., Gonzalez D., Mullins J.G., Bhatt A.M., Martinez A., RA Conlan R.S.; RT "PAH-domain-specific interactions of the Arabidopsis transcription RT coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and RT ALWAYS EARLY2 Myb-DNA binding factors."; RL J. Mol. Biol. 395:937-949(2010). CC -!- FUNCTION: Transcriptional repressor of gene expression involved in CC embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the CC sugar-inducible genes involved in the seed maturation program in CC seedlings. Plays an essential role in regulating the transition CC from seed maturation to seedling growth. Functionally redundant CC with VAL2/HSL1. {ECO:0000269|PubMed:15894743, CC ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. CC -!- SUBUNIT: Interacts with SNL1. {ECO:0000269|PubMed:19962994}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:15894743}. CC -!- TISSUE SPECIFICITY: Expressed in flowers and at lower levels in CC roots, stems and leaves. {ECO:0000269|PubMed:15894743}. CC -!- SEQUENCE CAUTION: CC Sequence=AAB63089.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB206553; BAD90970.1; -; mRNA. DR EMBL; U93215; AAB63089.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002685; AEC08392.1; -; Genomic_DNA. DR EMBL; AY062492; AAL32570.1; -; mRNA. DR PIR; G84708; G84708. DR RefSeq; NP_850146.1; NM_179815.3. DR UniGene; At.27438; -. DR ProteinModelPortal; Q8W4L5; -. DR SMR; Q8W4L5; -. DR BioGrid; 2946; 5. DR IntAct; Q8W4L5; 2. DR MINT; MINT-8189636; -. DR STRING; 3702.AT2G30470.1; -. DR iPTMnet; Q8W4L5; -. DR PaxDb; Q8W4L5; -. DR EnsemblPlants; AT2G30470.1; AT2G30470.1; AT2G30470. DR GeneID; 817597; -. DR Gramene; AT2G30470.1; AT2G30470.1; AT2G30470. DR KEGG; ath:AT2G30470; -. DR Araport; AT2G30470; -. DR TAIR; locus:2064417; AT2G30470. DR eggNOG; ENOG410IK2J; Eukaryota. DR eggNOG; ENOG410Z235; LUCA. DR HOGENOM; HOG000084353; -. DR InParanoid; Q8W4L5; -. DR OMA; KMGSKMC; -. DR OrthoDB; EOG0936022K; -. DR PhylomeDB; Q8W4L5; -. DR PRO; PR:Q8W4L5; -. DR Proteomes; UP000006548; Chromosome 2. DR Genevisible; Q8W4L5; AT. DR GO; GO:0005739; C:mitochondrion; IDA:TAIR. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:TAIR. DR GO; GO:0009737; P:response to abscisic acid; TAS:TAIR. DR GO; GO:0009744; P:response to sucrose; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 1: Evidence at protein level; KW Coiled coil; Complete proteome; DNA-binding; Metal-binding; Nucleus; KW Reference proteome; Repressor; Transcription; KW Transcription regulation; Zinc; Zinc-finger. FT CHAIN 1 790 B3 domain-containing transcription FT repressor VAL1. FT /FTId=PRO_0000375117. FT DNA_BIND 295 396 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT ZN_FING 538 588 CW-type. {ECO:0000255|PROSITE- FT ProRule:PRU00454}. FT COILED 685 732 {ECO:0000255}. SQ SEQUENCE 790 AA; 87002 MW; D81BDF8A40B3053C CRC64; MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS // ID ARFP_ARATH Reviewed; 670 AA. AC Q93YR9; B2CTE3; B2CTE4; Q9SZW1; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2001, sequence version 1. DT 05-JUL-2017, entry version 117. DE RecName: Full=Auxin response factor 16; GN Name=ARF16; OrderedLocusNames=At4g30080; ORFNames=F6G3.110; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 372-531, AND VARIANT PRO-471 DEL. RC STRAIN=cv. Ag-0, cv. An-1, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1, RC cv. Cvi-1, cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Kas-2, RC cv. Ll-0, cv. Mrk-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, RC cv. Oy-0, cv. Sorbo, cv. Wa-1, cv. Wassilewskija, cv. Wei-0, and RC cv. Wt-5; RX PubMed=18305205; DOI=10.1104/pp.108.116582; RA Ehrenreich I.M., Purugganan M.D.; RT "Sequence variation of microRNAs and their binding sites in RT Arabidopsis."; RL Plant Physiol. 146:1974-1982(2008). RN [5] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAB43843.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB81001.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL078464; CAB43843.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161576; CAB81001.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE85718.1; -; Genomic_DNA. DR EMBL; AY059792; AAL24140.1; -; mRNA. DR EMBL; AY091198; AAM14137.1; -; mRNA. DR EMBL; EU550120; ACB30906.1; -; Genomic_DNA. DR EMBL; EU550121; ACB30907.1; -; Genomic_DNA. DR EMBL; EU550122; ACB30908.1; -; Genomic_DNA. DR EMBL; EU550123; ACB30909.1; -; Genomic_DNA. DR EMBL; EU550124; ACB30910.1; -; Genomic_DNA. DR EMBL; EU550125; ACB30911.1; -; Genomic_DNA. DR EMBL; EU550126; ACB30912.1; -; Genomic_DNA. DR EMBL; EU550127; ACB30913.1; -; Genomic_DNA. DR EMBL; EU550128; ACB30914.1; -; Genomic_DNA. DR EMBL; EU550129; ACB30915.1; -; Genomic_DNA. DR EMBL; EU550130; ACB30916.1; -; Genomic_DNA. DR EMBL; EU550131; ACB30917.1; -; Genomic_DNA. DR EMBL; EU550132; ACB30918.1; -; Genomic_DNA. DR EMBL; EU550133; ACB30919.1; -; Genomic_DNA. DR EMBL; EU550134; ACB30920.1; -; Genomic_DNA. DR EMBL; EU550135; ACB30921.1; -; Genomic_DNA. DR EMBL; EU550136; ACB30922.1; -; Genomic_DNA. DR EMBL; EU550137; ACB30923.1; -; Genomic_DNA. DR EMBL; EU550138; ACB30924.1; -; Genomic_DNA. DR EMBL; EU550139; ACB30925.1; -; Genomic_DNA. DR EMBL; EU550140; ACB30926.1; -; Genomic_DNA. DR EMBL; EU550141; ACB30927.1; -; Genomic_DNA. DR EMBL; EU550142; ACB30928.1; -; Genomic_DNA. DR EMBL; EU550143; ACB30929.1; -; Genomic_DNA. DR PIR; T08984; T08984. DR RefSeq; NP_567841.1; NM_119154.5. DR UniGene; At.3365; -. DR ProteinModelPortal; Q93YR9; -. DR SMR; Q93YR9; -. DR BioGrid; 14418; 8. DR IntAct; Q93YR9; 9. DR STRING; 3702.AT4G30080.1; -. DR PaxDb; Q93YR9; -. DR EnsemblPlants; AT4G30080.1; AT4G30080.1; AT4G30080. DR GeneID; 829131; -. DR Gramene; AT4G30080.1; AT4G30080.1; AT4G30080. DR KEGG; ath:AT4G30080; -. DR Araport; AT4G30080; -. DR TAIR; locus:2126460; AT4G30080. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q93YR9; -. DR OMA; IIAKDMH; -. DR OrthoDB; EOG093603PN; -. DR PhylomeDB; Q93YR9; -. DR PRO; PR:Q93YR9; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q93YR9; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0035198; F:miRNA binding; ISS:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IGI:TAIR. DR GO; GO:0007389; P:pattern specification process; IDA:TAIR. DR GO; GO:0009733; P:response to auxin; IEP:TAIR. DR GO; GO:0048829; P:root cap development; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 670 Auxin response factor 16. FT /FTId=PRO_0000111520. FT DOMAIN 584 664 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 120 222 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VARIANT 477 477 Missing (in strain: cv. Ag-0, cv. An-1, FT cv. Bay-0, cv. Br-0, cv. Cvi-0, cv. Edi- FT 0, cv. Gy-0, cv. Kas-2, cv. Oy-0 and cv. FT Sorbo). SQ SEQUENCE 670 AA; 73979 MW; DD5F5F761805457F CRC64; MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV // ID ARFB_ARATH Reviewed; 859 AA. AC Q94JM3; O23671; Q56YL7; Q56YP4; Q56YR7; Q9C5W5; Q9FIT6; DT 13-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 13-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 126. DE RecName: Full=Auxin response factor 2; DE AltName: Full=ARF1-binding protein; DE Short=ARF1-BP; DE AltName: Full=Protein MEGAINTEGUMENTA; GN Name=ARF2; Synonyms=MNT; OrderedLocusNames=At5g62000; GN ORFNames=MTG10.3; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=9872454; DOI=10.1093/dnares/5.5.297; RA Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. VII. RT Sequence features of the regions of 1,013,767 bp covered by sixteen RT physically assigned P1 and TAC clones."; RL DNA Res. 5:297-308(1998). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] OF 394-859. RC STRAIN=cv. Columbia; RX PubMed=9188533; DOI=10.1126/science.276.5320.1865; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "ARF1, a transcription factor that binds to auxin response elements."; RL Science 276:1865-1868(1997). RN [7] RP NUCLEOTIDE SEQUENCE OF 406-859. RC STRAIN=cv. Columbia; RA Sessa G., Carabelli M., Ciarbelli A.R., Ruzza V., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the Arabidopsis IAA30."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [8] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [9] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [10] RP FUNCTION, AND DEVELOPMENTAL STAGE. RX PubMed=16176952; DOI=10.1242/dev.02012; RA Ellis C.M., Nagpal P., Young J.C., Hagen G., Guilfoyle T.J., RA Reed J.W.; RT "AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence RT and floral organ abscission in Arabidopsis thaliana."; RL Development 132:4563-4574(2005). RN [11] RP FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND DISRUPTION RP PHENOTYPE. RX PubMed=15960614; DOI=10.1111/j.1365-313X.2005.02426.x; RA Okushima Y., Mitina I., Quach H.L., Theologis A.; RT "AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental RT regulator."; RL Plant J. 43:29-46(2005). RN [12] RP FUNCTION, AND DISRUPTION PHENOTYPE. RX PubMed=16339187; DOI=10.1242/dev.02194; RA Schruff M.C., Spielman M., Tiwari S., Adams S., Fenby N., Scott R.J.; RT "The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin RT signalling, cell division, and the size of seeds and other organs."; RL Development 133:251-261(2006). RN [13] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. Promotes CC flowering, stamen development, floral organ abscission and fruit CC dehiscence. Functions independently of ethylene and cytokinin CC response pathways. May act as a repressor of cell division and CC organ growth. {ECO:0000269|PubMed:12036261, CC ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, CC ECO:0000269|PubMed:16339187}. CC -!- SUBUNIT: Homodimers and heterodimers. Interacts with ARF1. CC -!- INTERACTION: CC Q39011:ASK7; NbExp=3; IntAct=EBI-1799262, EBI-1798250; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=1; CC Comment=A number of isoforms are produced. According to EST CC sequences.; CC Name=1; CC IsoId=Q94JM3-1; Sequence=Displayed; CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. CC -!- DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young CC flower buds. At stage 10 of flower development, expression in the CC carpels becomes restricted to the style. Also expressed in anthers CC and filaments. At stage 13, expressed in the region at the top of CC the pedicel, including the abscission zone. Expressed in CC developing siliques. {ECO:0000269|PubMed:15960614, CC ECO:0000269|PubMed:16176952}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- DISRUPTION PHENOTYPE: Large, dark green rosette leaves, delayed CC flowering, thick and long inflorescence, abnormal flower CC morphology and sterility in early formed flowers, but fertility in CC late-formed flowers. Delayed senescence and abscission. Increased CC seed size and weight, and extra cell division and expansion in CC many organs. {ECO:0000269|PubMed:15960614, CC ECO:0000269|PubMed:16339187}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- CAUTION: Was originally (Ref.5) erroneously termed IAA26 and CC IAA30. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAC49752.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=AAK55665.1; Type=Frameshift; Positions=657; Evidence={ECO:0000305}; CC Sequence=AAN46837.1; Type=Frameshift; Positions=657; Evidence={ECO:0000305}; CC Sequence=CAD29696.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=CAD30210.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY669787; AAT67071.1; -; mRNA. DR EMBL; AB016880; BAB10162.1; -; Genomic_DNA. DR EMBL; CP002688; AED97548.1; -; Genomic_DNA. DR EMBL; CP002688; AED97549.1; -; Genomic_DNA. DR EMBL; CP002688; AED97550.1; -; Genomic_DNA. DR EMBL; CP002688; ANM68885.1; -; Genomic_DNA. DR EMBL; AF336918; AAG53999.1; -; mRNA. DR EMBL; AF378862; AAK55665.1; ALT_FRAME; mRNA. DR EMBL; BT000784; AAN31923.1; -; mRNA. DR EMBL; BT001072; AAN46837.1; ALT_FRAME; mRNA. DR EMBL; AK221252; BAD93891.1; -; mRNA. DR EMBL; AK221254; BAD93897.1; -; mRNA. DR EMBL; AK221274; BAD93959.1; -; mRNA. DR EMBL; AK221277; BAD93968.1; -; mRNA. DR EMBL; AK221282; BAD93985.1; -; mRNA. DR EMBL; AK221305; BAD94058.1; -; mRNA. DR EMBL; U89771; AAC49752.1; ALT_INIT; mRNA. DR EMBL; AJ441313; CAD29696.1; ALT_INIT; mRNA. DR EMBL; AJ458328; CAD30210.1; ALT_INIT; mRNA. DR RefSeq; NP_001330603.1; NM_001345519.1. [Q94JM3-1] DR RefSeq; NP_201006.2; NM_125593.5. [Q94JM3-1] DR RefSeq; NP_851244.1; NM_180913.4. [Q94JM3-1] DR RefSeq; NP_974980.1; NM_203251.4. [Q94JM3-1] DR UniGene; At.21704; -. DR ProteinModelPortal; Q94JM3; -. DR SMR; Q94JM3; -. DR BioGrid; 21565; 11. DR DIP; DIP-46014N; -. DR IntAct; Q94JM3; 5. DR STRING; 3702.AT5G62000.1; -. DR iPTMnet; Q94JM3; -. DR PaxDb; Q94JM3; -. DR PRIDE; Q94JM3; -. DR EnsemblPlants; AT5G62000.1; AT5G62000.1; AT5G62000. [Q94JM3-1] DR EnsemblPlants; AT5G62000.2; AT5G62000.2; AT5G62000. [Q94JM3-1] DR EnsemblPlants; AT5G62000.3; AT5G62000.3; AT5G62000. [Q94JM3-1] DR EnsemblPlants; AT5G62000.5; AT5G62000.5; AT5G62000. [Q94JM3-1] DR GeneID; 836321; -. DR Gramene; AT5G62000.1; AT5G62000.1; AT5G62000. [Q94JM3-1] DR Gramene; AT5G62000.2; AT5G62000.2; AT5G62000. [Q94JM3-1] DR Gramene; AT5G62000.3; AT5G62000.3; AT5G62000. [Q94JM3-1] DR Gramene; AT5G62000.5; AT5G62000.5; AT5G62000. [Q94JM3-1] DR KEGG; ath:AT5G62000; -. DR Araport; AT5G62000; -. DR TAIR; locus:2174013; AT5G62000. DR eggNOG; ENOG410IE1Z; Eukaryota. DR eggNOG; ENOG4110RNJ; LUCA. DR InParanoid; Q94JM3; -. DR OMA; SDGRMQM; -. DR OrthoDB; EOG09360207; -. DR PhylomeDB; Q94JM3; -. DR PRO; PR:Q94JM3; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q94JM3; baseline and differential. DR Genevisible; Q94JM3; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IMP:TAIR. DR GO; GO:0010047; P:fruit dehiscence; IMP:TAIR. DR GO; GO:0010150; P:leaf senescence; IMP:TAIR. DR GO; GO:0008285; P:negative regulation of cell proliferation; IMP:TAIR. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:TAIR. DR GO; GO:0048481; P:plant ovule development; IMP:TAIR. DR GO; GO:0009911; P:positive regulation of flower development; IMP:TAIR. DR GO; GO:1903288; P:positive regulation of potassium ion import; IMP:TAIR. DR GO; GO:0009737; P:response to abscisic acid; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 859 Auxin response factor 2. FT /FTId=PRO_0000111506. FT DOMAIN 733 817 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 164 266 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 491 492 RR -> KK (in Ref. 6; AAC49752 and 7; FT CAD29696/CAD30210). {ECO:0000305}. FT CONFLICT 520 520 D -> E (in Ref. 6; AAC49752 and 7; FT CAD29696/CAD30210). {ECO:0000305}. FT CONFLICT 596 596 V -> A (in Ref. 5; BAD93968). FT {ECO:0000305}. FT CONFLICT 675 675 R -> K (in Ref. 6; AAC49752 and 7; FT CAD29696/CAD30210). {ECO:0000305}. FT CONFLICT 823 823 P -> Q (in Ref. 6; AAC49752 and 7; FT CAD29696/CAD30210). {ECO:0000305}. FT CONFLICT 826 826 L -> V (in Ref. 5; BAD93959/BAD93897/ FT BAD93891). {ECO:0000305}. SQ SEQUENCE 859 AA; 95701 MW; 6B75171D7FF0E66B CRC64; MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS // ID ARFV_ORYSJ Reviewed; 698 AA. AC Q9AV47; A0A0P0XVF4; Q7XDB4; DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 1. DT 05-JUL-2017, entry version 103. DE RecName: Full=Auxin response factor 22; GN Name=ARF22; OrderedLocusNames=Os10g0479900, LOC_Os10g33940; GN ORFNames=OSJNBa0093B11.2; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12791992; DOI=10.1126/science.1083523; RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., RA Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., RA Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H., RA Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., RA Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., RA De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., RA Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., RA Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., RA Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., RA Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., RA Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., RA Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., RA Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., RA Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., RA Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., RA Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., RA Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.; RT "In-depth view of structure, activity, and evolution of rice RT chromosome 10."; RL Science 300:1566-1569(2003). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RG The rice full-length cDNA consortium; RT "Oryza sativa full length cDNA."; RL Submitted (NOV-2008) to the EMBL/GenBank/DDBJ databases. RN [6] RP GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE. RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006; RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., RA Tao Y.; RT "Genome-wide analysis of the auxin response factors (ARF) gene family RT in rice (Oryza sativa)."; RL Gene 394:13-24(2007). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young CC panicles. {ECO:0000269|PubMed:17408882}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAP54297.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=BAF26786.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC024594; AAK21342.1; -; Genomic_DNA. DR EMBL; DP000086; AAP54297.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP008216; BAF26786.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014966; BAT11328.1; -; Genomic_DNA. DR EMBL; AK318617; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015614842.1; XM_015759356.1. DR UniGene; Os.3105; -. DR ProteinModelPortal; Q9AV47; -. DR SMR; Q9AV47; -. DR STRING; 39947.LOC_Os10g33940.1; -. DR PaxDb; Q9AV47; -. DR EnsemblPlants; OS10T0479900-01; OS10T0479900-01; OS10G0479900. DR GeneID; 4348918; -. DR Gramene; OS10T0479900-01; OS10T0479900-01; OS10G0479900. DR KEGG; osa:4348918; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; Q9AV47; -. DR OMA; ACGGMEC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000059680; Chromosome 10. DR Genevisible; Q9AV47; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 698 Auxin response factor 22. FT /FTId=PRO_0000299281. FT DOMAIN 603 683 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 128 230 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 75610 MW; E639D3A5502717F9 CRC64; MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF VVSSAPAHDN ISCLLSISTP QVAEKSDDRK TTPHIMLFGK AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA // ID Y1410_ORYSJ Reviewed; 365 AA. AC Q9AWS0; A0A0P0UYP7; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 1. DT 07-JUN-2017, entry version 97. DE RecName: Full=AP2/ERF and B3 domain-containing protein Os01g0141000; GN OrderedLocusNames=Os01g0141000, LOC_Os01g04800; ORFNames=P0480E02.32; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000255|PROSITE-ProRule:PRU00366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP002913; BAB21218.1; -; Genomic_DNA. DR EMBL; AP008207; BAF03896.1; -; Genomic_DNA. DR EMBL; AP014957; BAS70316.1; -; Genomic_DNA. DR EMBL; AK065008; BAG89320.1; -; mRNA. DR RefSeq; XP_015622259.1; XM_015766773.1. DR UniGene; Os.27299; -. DR ProteinModelPortal; Q9AWS0; -. DR SMR; Q9AWS0; -. DR STRING; 39947.LOC_Os01g04800.1; -. DR PaxDb; Q9AWS0; -. DR PRIDE; Q9AWS0; -. DR EnsemblPlants; OS01T0141000-01; OS01T0141000-01; OS01G0141000. DR GeneID; 4325479; -. DR Gramene; OS01T0141000-01; OS01T0141000-01; OS01G0141000. DR KEGG; osa:4325479; -. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR InParanoid; Q9AWS0; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000059680; Chromosome 1. DR Genevisible; Q9AWS0; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 365 AP2/ERF and B3 domain-containing protein FT Os01g0141000. FT /FTId=PRO_0000377731. FT DNA_BIND 68 123 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 294 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 39280 MW; 0A1EAD4E7986FE6C CRC64; MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSRPAA AAAQQSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRYRGRDAAT NFPGAAASAA ELAFLAAHSK AEIVDMLRKH TYADELRQGL RRGRGMGARA QPTPSWAREP LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL RRAASSDSAS AAATGKGVLL NFEDGEGKVW RFRYSYWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSRSA YGPDKLLFID CKKNNAAAAT TTCAGDERPT TSGAEPRVVR LFGVDIAGGD CRKRERAVEM GQEVFLLKRQ CVVHQRTPAL GALLL // ID Y1407_ORYSJ Reviewed; 317 AA. AC Q9AWS7; A0A0P0UYB5; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 1. DT 07-JUN-2017, entry version 82. DE RecName: Full=Putative AP2/ERF and B3 domain-containing protein Os01g0140700; GN OrderedLocusNames=Os01g0140700, LOC_Os01g04750; ORFNames=P0480E02.22; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12447438; DOI=10.1038/nature01184; RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., RA Yano M., Jiang J., Gojobori T.; RT "The genome sequence and structure of rice chromosome 1."; RL Nature 420:312-316(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000255|PROSITE-ProRule:PRU00366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP002913; BAB21211.1; -; Genomic_DNA. DR EMBL; AP014957; BAS70315.1; -; Genomic_DNA. DR ProteinModelPortal; Q9AWS7; -. DR SMR; Q9AWS7; -. DR STRING; 39947.LOC_Os01g04750.1; -. DR PaxDb; Q9AWS7; -. DR EnsemblPlants; OS01T0140700-00; OS01T0140700-00; OS01G0140700. DR Gramene; OS01T0140700-00; OS01T0140700-00; OS01G0140700. DR eggNOG; ENOG410JSZ2; Eukaryota. DR eggNOG; ENOG41108C9; LUCA. DR InParanoid; Q9AWS7; -. DR OMA; CIDDNTS; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000059680; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 317 Putative AP2/ERF and B3 domain-containing FT protein Os01g0140700. FT /FTId=PRO_0000377730. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 178 287 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 28 34 Poly-Glu. SQ SEQUENCE 317 AA; 35296 MW; EF124A3839E68CE5 CRC64; MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEELAAMEE DELIHVVQAA ELRLPSSTTA TRPSSRYKGV VPQPNGRWGA QIYERHARVW LGTFPDEEAA ARAYDVAALR FRGRDAVTNR APAAEGASAG ELAFLAAHSK AEVVDMLRKH TYDDELQQGL RRGSRAQPTP RWAREPLFEK AVTPSDVGKL NRLVVPKQQA ERHFPFPLRR HSSDAAGKGV LLNFEDGDGK VWRFRYSYWN SSQSYVLTKG WSRFVREKGL RPGDTVAFSR SAAAWGTEKH LLIDCKKMER NNLATVDDDA RVVVKLFGVD IAGDKTR // ID ARFR_ARATH Reviewed; 602 AA. AC Q9C5W9; Q0WM85; Q9M355; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 1. DT 05-JUL-2017, entry version 116. DE RecName: Full=Auxin response factor 18; GN Name=ARF18; OrderedLocusNames=At3g61830; ORFNames=F15G16.220; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130713; DOI=10.1038/35048706; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 409-602. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAB71113.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL132959; CAB71113.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE80264.1; -; Genomic_DNA. DR EMBL; AF334717; AAG50095.1; -; mRNA. DR EMBL; AY059746; AAL24094.1; -; mRNA. DR EMBL; AY070463; AAL49929.1; -; mRNA. DR EMBL; AY091392; AAM14331.1; -; mRNA. DR EMBL; AK229945; BAF01771.1; -; mRNA. DR PIR; T47975; T47975. DR RefSeq; NP_567119.1; NM_116048.3. DR UniGene; At.17167; -. DR UniGene; At.69165; -. DR ProteinModelPortal; Q9C5W9; -. DR SMR; Q9C5W9; -. DR BioGrid; 10670; 17. DR IntAct; Q9C5W9; 18. DR MINT; MINT-8065728; -. DR STRING; 3702.AT3G61830.1; -. DR PaxDb; Q9C5W9; -. DR EnsemblPlants; AT3G61830.1; AT3G61830.1; AT3G61830. DR GeneID; 825356; -. DR Gramene; AT3G61830.1; AT3G61830.1; AT3G61830. DR KEGG; ath:AT3G61830; -. DR Araport; AT3G61830; -. DR TAIR; locus:2076765; AT3G61830. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q9C5W9; -. DR OMA; KMSFEGE; -. DR OrthoDB; EOG09360207; -. DR PhylomeDB; Q9C5W9; -. DR PRO; PR:Q9C5W9; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q9C5W9; baseline and differential. DR Genevisible; Q9C5W9; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 602 Auxin response factor 18. FT /FTId=PRO_0000111522. FT DOMAIN 489 581 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 128 230 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 602 AA; 67662 MW; EC299D42B1A1C0BD CRC64; MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS RG // ID RAVL3_ARATH Reviewed; 352 AA. AC Q9C688; DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 1. DT 07-JUN-2017, entry version 107. DE RecName: Full=AP2/ERF and B3 domain-containing transcription factor At1g51120; DE AltName: Full=RAV1-like ethylene-responsive transcription factor At1g51120; GN OrderedLocusNames=At1g51120; ORFNames=F23H24.5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Pan Y., Gong W., Liu D., Fu Q., Mei W.-Q., Song W.-Q., Ma L.-G., RA Luo J.-C., Deng X.-W., Zhu Y.-X.; RT "Molecular cloning, expression, phylogenetic and functional RT characterization of the Arabidopsis AP2/EREBP transcription factor RT family."; RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=16407444; DOI=10.1104/pp.105.073783; RA Nakano T., Suzuki K., Fujimura T., Shinshi H.; RT "Genome-wide analysis of the ERF gene family in Arabidopsis and RT rice."; RL Plant Physiol. 140:411-432(2006). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to CC the GCC-box pathogenesis-related promoter element. May be involved CC in the regulation of gene expression by stress factors and by CC components of stress signal transduction pathways (By similarity). CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. CC RAV subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY560883; AAT44950.1; -; mRNA. DR EMBL; AC079828; AAG50531.1; -; Genomic_DNA. DR EMBL; CP002684; AEE32624.1; -; Genomic_DNA. DR PIR; F96548; F96548. DR RefSeq; NP_175524.1; NM_103991.1. DR UniGene; At.50656; -. DR ProteinModelPortal; Q9C688; -. DR SMR; Q9C688; -. DR BioGrid; 26760; 8. DR STRING; 3702.AT1G51120.1; -. DR PaxDb; Q9C688; -. DR PRIDE; Q9C688; -. DR DNASU; 841535; -. DR EnsemblPlants; AT1G51120.1; AT1G51120.1; AT1G51120. DR GeneID; 841535; -. DR Gramene; AT1G51120.1; AT1G51120.1; AT1G51120. DR KEGG; ath:AT1G51120; -. DR Araport; AT1G51120; -. DR TAIR; locus:2026058; AT1G51120. DR eggNOG; ENOG410IWEF; Eukaryota. DR eggNOG; ENOG410YI8X; LUCA. DR HOGENOM; HOG000090522; -. DR InParanoid; Q9C688; -. DR KO; K09287; -. DR OMA; HEPDFQE; -. DR OrthoDB; EOG09360HMO; -. DR PhylomeDB; Q9C688; -. DR PRO; PR:Q9C688; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9C688; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Activator; Complete proteome; DNA-binding; Ethylene signaling pathway; KW Nucleus; Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 352 AP2/ERF and B3 domain-containing FT transcription factor At1g51120. FT /FTId=PRO_0000290435. FT DNA_BIND 46 103 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 178 297 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 40307 MW; 50C7B0ED821EA11B CRC64; MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ // ID RAVL1_ARATH Reviewed; 361 AA. AC Q9C6M5; DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 1. DT 07-JUN-2017, entry version 106. DE RecName: Full=AP2/ERF and B3 domain-containing transcription repressor TEM1; DE AltName: Full=Protein TEMPRANILLO 1; DE AltName: Full=RAV1-like ethylene-responsive transcription factor TEM1; GN Name=TEM1; OrderedLocusNames=At1g25560; ORFNames=F2J7.3; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=16407444; DOI=10.1104/pp.105.073783; RA Nakano T., Suzuki K., Fujimura T., Shinshi H.; RT "Genome-wide analysis of the ERF gene family in Arabidopsis and RT rice."; RL Plant Physiol. 140:411-432(2006). RN [5] RP FUNCTION, TISSUE SPECIFICITY, INDUCTION, AND INTERACTION WITH FT. RX PubMed=18718758; DOI=10.1016/j.cub.2008.07.075; RA Castillejo C., Pelaz S.; RT "The balance between CONSTANS and TEMPRANILLO activities determines FT RT expression to trigger flowering."; RL Curr. Biol. 18:1338-1343(2008). RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Transcriptional repressor of flowering time on long day CC plants. Acts directly on FT expression by binding 5'-CAACA-3' and CC 5'-CACCTG-3 sequences. Functionally redundant with TEM2. CC {ECO:0000269|PubMed:18718758}. CC -!- SUBUNIT: Interacts with FT. {ECO:0000269|PubMed:18718758}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- TISSUE SPECIFICITY: Expressed in leaves. CC {ECO:0000269|PubMed:18718758}. CC -!- INDUCTION: Expressed with a circadian rhythm showing a peak at CC dawn. {ECO:0000269|PubMed:18718758}. CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. CC RAV subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC079281; AAG50808.1; -; Genomic_DNA. DR EMBL; CP002684; AEE30642.1; -; Genomic_DNA. DR EMBL; AY091069; AAM13889.1; -; mRNA. DR EMBL; AY122941; AAM67474.1; -; mRNA. DR PIR; A86386; A86386. DR RefSeq; NP_173927.1; NM_102367.3. DR UniGene; At.17318; -. DR ProteinModelPortal; Q9C6M5; -. DR SMR; Q9C6M5; -. DR BioGrid; 24380; 5. DR DIP; DIP-59693N; -. DR STRING; 3702.AT1G25560.1; -. DR PaxDb; Q9C6M5; -. DR EnsemblPlants; AT1G25560.1; AT1G25560.1; AT1G25560. DR GeneID; 839143; -. DR Gramene; AT1G25560.1; AT1G25560.1; AT1G25560. DR KEGG; ath:AT1G25560; -. DR Araport; AT1G25560; -. DR TAIR; locus:2031185; AT1G25560. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR InParanoid; Q9C6M5; -. DR KO; K09287; -. DR OMA; KQTMINA; -. DR OrthoDB; EOG09360IAF; -. DR PhylomeDB; Q9C6M5; -. DR PRO; PR:Q9C6M5; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; Q9C6M5; baseline and differential. DR Genevisible; Q9C6M5; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0048573; P:photoperiodism, flowering; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW Complete proteome; DNA-binding; Ethylene signaling pathway; Nucleus; KW Reference proteome; Repressor; Transcription; KW Transcription regulation. FT CHAIN 1 361 AP2/ERF and B3 domain-containing FT transcription repressor TEM1. FT /FTId=PRO_0000290433. FT DNA_BIND 71 126 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 195 306 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 40558 MW; 52DB2D42DAD3042B CRC64; MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG CSKKQAIINI L // ID RAVL2_ARATH Reviewed; 337 AA. AC Q9C6P5; Q6J9P3; DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 1. DT 05-JUL-2017, entry version 105. DE RecName: Full=AP2/ERF and B3 domain-containing transcription factor At1g50680; DE AltName: Full=RAV1-like ethylene-responsive transcription factor At1g50680; GN OrderedLocusNames=At1g50680; ORFNames=F17J6.20; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Pan Y., Gong W., Liu D., Fu Q., Mei W.-Q., Song W.-Q., Ma L.-G., RA Luo J.-C., Deng X.-W., Zhu Y.-X.; RT "Molecular cloning, expression, phylogenetic and functional RT characterization of the Arabidopsis AP2/EREBP transcription factor RT family."; RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=16407444; DOI=10.1104/pp.105.073783; RA Nakano T., Suzuki K., Fujimura T., Shinshi H.; RT "Genome-wide analysis of the ERF gene family in Arabidopsis and RT rice."; RL Plant Physiol. 140:411-432(2006). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to CC the GCC-box pathogenesis-related promoter element. May be involved CC in the regulation of gene expression by stress factors and by CC components of stress signal transduction pathways (By similarity). CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. CC RAV subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY560882; AAT44949.1; -; mRNA. DR EMBL; AC079279; AAG51186.1; -; Genomic_DNA. DR EMBL; CP002684; AEE32578.1; -; Genomic_DNA. DR PIR; E96543; E96543. DR RefSeq; NP_175483.1; NM_103950.1. DR UniGene; At.50579; -. DR ProteinModelPortal; Q9C6P5; -. DR SMR; Q9C6P5; -. DR BioGrid; 26715; 5. DR STRING; 3702.AT1G50680.1; -. DR PaxDb; Q9C6P5; -. DR EnsemblPlants; AT1G50680.1; AT1G50680.1; AT1G50680. DR GeneID; 841490; -. DR Gramene; AT1G50680.1; AT1G50680.1; AT1G50680. DR KEGG; ath:AT1G50680; -. DR Araport; AT1G50680; -. DR TAIR; locus:2015832; AT1G50680. DR eggNOG; ENOG410IWEF; Eukaryota. DR eggNOG; ENOG410YI8X; LUCA. DR HOGENOM; HOG000090522; -. DR InParanoid; Q9C6P5; -. DR KO; K09287; -. DR OMA; GEVNQES; -. DR OrthoDB; EOG09360HMO; -. DR PhylomeDB; Q9C6P5; -. DR PRO; PR:Q9C6P5; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9C6P5; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR017392; AP2/ERF-transcript_factor. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PIRSF; PIRSF038123; PTI6; 2. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Activator; Complete proteome; DNA-binding; Ethylene signaling pathway; KW Nucleus; Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 337 AP2/ERF and B3 domain-containing FT transcription factor At1g50680. FT /FTId=PRO_0000290434. FT DNA_BIND 27 84 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 157 271 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 238 238 S -> G (in Ref. 1; AAT44949). FT {ECO:0000305}. SQ SEQUENCE 337 AA; 38473 MW; 57B1F4AE403DAA4A CRC64; MRLDDEPENA LVVSSSPKTV VASGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSADE AATAYDSASI KLRSFDANSH RNFPWSTITL NEPDFQNCYT TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP // ID ARFT_ARATH Reviewed; 590 AA. AC Q9C7I9; Q5IRX2; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 23-SEP-2008, sequence version 3. DT 05-JUL-2017, entry version 108. DE RecName: Full=Auxin response factor 20; GN Name=ARF20; OrderedLocusNames=At1g35240; ORFNames=T9I1.3; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAG51458.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY669795; AAT67079.1; -; mRNA. DR EMBL; AC069160; AAG51458.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE31771.1; -; Genomic_DNA. DR PIR; D86473; D86473. DR RefSeq; NP_001319148.1; NM_001333144.1. DR ProteinModelPortal; Q9C7I9; -. DR SMR; Q9C7I9; -. DR BioGrid; 25645; 10. DR IntAct; Q9C7I9; 8. DR STRING; 3702.AT1G35240.1; -. DR PaxDb; Q9C7I9; -. DR PRIDE; Q9C7I9; -. DR GeneID; 840413; -. DR KEGG; ath:AT1G35240; -. DR Araport; AT1G35240; -. DR TAIR; locus:2206717; AT1G35240. DR HOGENOM; HOG000241141; -. DR OMA; DIYGHEW; -. DR OrthoDB; EOG093601Q8; -. DR PhylomeDB; Q9C7I9; -. DR PRO; PR:Q9C7I9; -. DR Proteomes; UP000006548; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 590 Auxin response factor 20. FT /FTId=PRO_0000111524. FT DOMAIN 495 576 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 224 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 590 AA; 66970 MW; 8332DD4BA48CA628 CRC64; METGNVVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVDAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI TLMPDTTQVV IPTQSENQFR PLVNSFTKVL TASDTSAYGG FFVPKKHAIE CLPPLPLPAQ ELLAKDLHGN QWRFRHSYRG TPQRHSLTTG WNEFTTSKKL VKGDVIVFVR GETGELRVGI RRARHQQGNI PSSIVSIDCM RHGVIASAKH ALDNQCIFIV VYKPSIRSSQ FIVSYDKFLD AMNNKFIVGS RFTMRFEGDD FSERRYFGTI IGVNDFSPHW KCSEWRSLEV QWDEFASFSR PNKVSPWEIE HLMSALNVPR SSLLKNKRLR EVNEFGQEIG QLSVASPMNT SLRYRDTTED AMNPSRLLMS YPVQPMPKLN YNNQMVTQIE ENITTKAVTN FRLFGVSLAI PLVIKDPIEE IGSDISKLTE GKKFGQSQTL RSPIEIQSKQ FGSTRTCTKV QMQGVTIGRA VDLSVLNGYD QLILELEKLF DLKGQLQTRN QWKIAFTDSD GYEMLVGDDP WPEFCKMVKK ILIYSKEEVK NLKSSKSLSS // ID ARFV_ARATH Reviewed; 598 AA. AC Q9C8N7; Q5IRX1; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 105. DE RecName: Full=Auxin response factor 22; GN Name=ARF22; OrderedLocusNames=At1g34390; ORFNames=F7P12.6; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAG51894.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY669796; AAT67080.1; -; mRNA. DR EMBL; AC023913; AAG51894.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE31708.1; -; Genomic_DNA. DR PIR; C86468; C86468. DR RefSeq; NP_174699.2; NM_103162.2. DR UniGene; At.51186; -. DR ProteinModelPortal; Q9C8N7; -. DR SMR; Q9C8N7; -. DR BioGrid; 25573; 11. DR IntAct; Q9C8N7; 10. DR STRING; 3702.AT1G34390.1; -. DR PaxDb; Q9C8N7; -. DR EnsemblPlants; AT1G34390.1; AT1G34390.1; AT1G34390. DR GeneID; 840341; -. DR Gramene; AT1G34390.1; AT1G34390.1; AT1G34390. DR KEGG; ath:AT1G34390; -. DR Araport; AT1G34390; -. DR TAIR; locus:2036288; AT1G34390. DR HOGENOM; HOG000241141; -. DR OMA; EINDFGQ; -. DR OrthoDB; EOG093612K8; -. DR PhylomeDB; Q9C8N7; -. DR PRO; PR:Q9C8N7; -. DR Proteomes; UP000006548; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 598 Auxin response factor 22. FT /FTId=PRO_0000111526. FT DOMAIN 509 590 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 124 226 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 598 AA; 67733 MW; 1F9A79C4BD932D94 CRC64; MESGNIVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKIYYFP QGNIELVEAS TREELNELKP ICDLPSKLQC RVIAIQLKVE NNSDETYAEI TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ // ID ARFU_ARATH Reviewed; 606 AA. AC Q9C8N9; Q9LNK2; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 108. DE RecName: Full=Putative auxin response factor 21; GN Name=ARF21; OrderedLocusNames=At1g34410; ORFNames=F12K21.26, F7P12.12; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF79263.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=AAG51897.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC023279; AAF79263.1; ALT_SEQ; Genomic_DNA. DR EMBL; AC023913; AAG51897.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE31710.1; -; Genomic_DNA. DR PIR; E86468; E86468. DR RefSeq; NP_174701.2; NM_103164.2. DR UniGene; At.51930; -. DR ProteinModelPortal; Q9C8N9; -. DR SMR; Q9C8N9; -. DR STRING; 3702.AT1G34410.1; -. DR PaxDb; Q9C8N9; -. DR EnsemblPlants; AT1G34410.1; AT1G34410.1; AT1G34410. DR GeneID; 840344; -. DR Gramene; AT1G34410.1; AT1G34410.1; AT1G34410. DR KEGG; ath:AT1G34410; -. DR Araport; AT1G34410; -. DR TAIR; locus:2009298; AT1G34410. DR HOGENOM; HOG000241141; -. DR OMA; TIYNERM; -. DR OrthoDB; EOG093612K8; -. DR PhylomeDB; Q9C8N9; -. DR PRO; PR:Q9C8N9; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9C8N9; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 606 Putative auxin response factor 21. FT /FTId=PRO_0000111525. FT DOMAIN 511 592 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 606 AA; 68779 MW; BFC741DA6EBEE632 CRC64; MESGNIVNAQ PKLSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVQAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDEIYAEI TLMPDTTQVV IPTQSENRFR PLVNSFTKVL TASDTSAYGG FSVPKKHAIE CLPPLDMSQP LPAQEILAID LHDNQWRFRH NYRGTPQRHS LTTGWNEFIT SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC IFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG DDFSERRYFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLVPALNV PRSSLLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV ASPMNISLRY RDTTEAAMNP SRLLMSYPVQ PMPKLNYNNQ MVTQIEENIT TKAGTNFRLF GVTLDTPPMI KDPIKQIGSD ISKLTERKKF GQSQTLRSPI EIQSKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWKI AFTDSDGYEM LVGDDPWPEF CKMVKKILIY SKEEVKNLKS SKSLSS // ID Y5698_ARATH Reviewed; 334 AA. AC Q9FGD2; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 07-JUN-2017, entry version 105. DE RecName: Full=Putative B3 domain-containing protein At5g66980; GN OrderedLocusNames=At5g66980; ORFNames=K8A10.5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI."; RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases. RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB026640; BAB08937.1; -; Genomic_DNA. DR EMBL; CP002688; AED98286.1; -; Genomic_DNA. DR RefSeq; NP_201499.1; NM_126097.2. DR ProteinModelPortal; Q9FGD2; -. DR SMR; Q9FGD2; -. DR STRING; 3702.AT5G66980.1; -. DR PaxDb; Q9FGD2; -. DR EnsemblPlants; AT5G66980.1; AT5G66980.1; AT5G66980. DR GeneID; 836832; -. DR Gramene; AT5G66980.1; AT5G66980.1; AT5G66980. DR KEGG; ath:AT5G66980; -. DR Araport; AT5G66980; -. DR TAIR; locus:2158108; AT5G66980. DR eggNOG; ENOG410J303; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR HOGENOM; HOG000155376; -. DR InParanoid; Q9FGD2; -. DR OMA; SHESWLC; -. DR OrthoDB; EOG09360IKT; -. DR PhylomeDB; Q9FGD2; -. DR PRO; PR:Q9FGD2; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q9FGD2; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 334 Putative B3 domain-containing protein FT At5g66980. FT /FTId=PRO_0000375159. FT DNA_BIND 8 105 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 218 317 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 38780 MW; 4DD5187FE8C4D3FC CRC64; MVDLSKDLQF FKVFLPEFGS HELVIPPAFI DMLEKPLPKE AFLVDEIGRL WCVETKTEDT EERFCVFFTK GWQSFANDQS LEFGDFLVFS YDGDSRFSVT IFANDGCKKD VGVVSTTDRS RVSLDEEEPD DIFTKPDRMR DCDCGQSINR KRKRDSVNED PHVLVDDKPE YVSTYKTKPE HSEKTQRTVN RAGDTCDISW FPEKKHNGFE ESVYKPKHPH FVRNITRGSL QKLELPLTFL RSNGIELEED IELCDESGKK WPLKILNHDR GFKFSHESWL CFCKSHEMIL TNKCLFEFIV PSNGRCSEIL VRIVSGRLPT TMTKNNYQVI DMQP // ID ARFH_ARATH Reviewed; 811 AA. AC Q9FGV1; A8MQI4; Q5IRX7; Q9ZTR9; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 118. DE RecName: Full=Auxin response factor 8; DE AltName: Full=Protein FRUIT WITHOUT FERTILIZATION; GN Name=ARF8; Synonyms=FWF; OrderedLocusNames=At5g37020; GN ORFNames=K15O15.5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND TRANSCRIPTIONAL ACTIVATOR. RC STRAIN=cv. Columbia; RX PubMed=10318972; DOI=10.1073/pnas.96.10.5844; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Activation and repression of transcription by auxin-response RT factors."; RL Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10718197; DOI=10.1093/dnares/7.1.31; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:31-63(2000). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [5] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [6] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [7] RP FUNCTION, AND DEVELOPMENTAL STAGE. RX PubMed=16107481; DOI=10.1242/dev.01955; RA Nagpal P., Ellis C.M., Weber H., Ploense S.E., Barkawi L.S., RA Guilfoyle T.J., Hagen G., Alonso J.M., Cohen J.D., Farmer E.E., RA Ecker J.R., Reed J.W.; RT "Auxin response factors ARF6 and ARF8 promote jasmonic acid production RT and flower maturation."; RL Development 132:4107-4118(2005). RN [8] RP INDUCTION. RX PubMed=17021043; DOI=10.1242/dev.02602; RA Wu M.F., Tian Q., Reed J.W.; RT "Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 RT expression, and regulates both female and male reproduction."; RL Development 133:4211-4218(2006). RN [9] RP FUNCTION, DEVELOPMENTAL STAGE, AND DISRUPTION PHENOTYPE. RX PubMed=16829592; DOI=10.1105/tpc.105.037192; RA Goetz M., Vivian-Smith A., Johnson S.D., Koltunow A.M.; RT "AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in RT Arabidopsis."; RL Plant Cell 18:1873-1886(2006). RN [10] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Seems to CC act as transcriptional activator. Formation of heterodimers with CC Aux/IAA proteins may alter their ability to modulate early auxin CC response genes expression. Regulates both stamen and gynoecium CC maturation. Promotes jasmonic acid production. Partially redundant CC with ARF6. Involved in fruit initiation. Acts as an inhibitor to CC stop further carpel development in the absence of fertilization CC and the generation of signals required to initiate fruit and seed CC development. {ECO:0000269|PubMed:12036261, CC ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9FGV1-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9FGV1-2; Sequence=VSP_037313; CC Note=Derived from EST data. May be due to a competing donor CC splice site. No experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078}. CC -!- DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 CC of flower development. Highly expressed in petals at stages 9-10, CC decreases at stage 11 and disappears after flower stage 12. In CC anthers, expressed at stage 11 in the tapetum, disappears early in CC stage 12 when the tapetum degrades and reappears throughout the CC anther late in stage 12 to persist at least until stage 13. In CC stamen filaments, expressed at stages 12 to 13, especially near CC the apical end of the filament. Expressed throughout the gynoecium CC at early stages up to stage 12, especially strongly in ovules. CC Expression in gynoecium decreases late in stage 12, but persists CC through stage 13, especially near the apical end including the CC style. Expressed in the mesocarp of the fruit and the carpel CC septum during fruit growth. {ECO:0000269|PubMed:16107481, CC ECO:0000269|PubMed:16829592}. CC -!- INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- DISRUPTION PHENOTYPE: Seedless (parthenocarpic) fruit. CC {ECO:0000269|PubMed:16829592}. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB08972.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF042196; AAD02219.1; -; mRNA. DR EMBL; AY669790; AAT67074.1; -; mRNA. DR EMBL; AB024026; BAB08972.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002688; AED94137.1; -; Genomic_DNA. DR EMBL; CP002688; AED94138.1; -; Genomic_DNA. DR RefSeq; NP_001078672.1; NM_001085203.1. [Q9FGV1-2] DR RefSeq; NP_198518.1; NM_123060.3. [Q9FGV1-1] DR UniGene; At.23446; -. DR ProteinModelPortal; Q9FGV1; -. DR SMR; Q9FGV1; -. DR BioGrid; 18923; 31. DR IntAct; Q9FGV1; 22. DR STRING; 3702.AT5G37020.1; -. DR PaxDb; Q9FGV1; -. DR EnsemblPlants; AT5G37020.1; AT5G37020.1; AT5G37020. [Q9FGV1-1] DR GeneID; 833672; -. DR Gramene; AT5G37020.1; AT5G37020.1; AT5G37020. [Q9FGV1-1] DR KEGG; ath:AT5G37020; -. DR Araport; AT5G37020; -. DR TAIR; locus:2152642; AT5G37020. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q9FGV1; -. DR OMA; PHHQYLQ; -. DR OrthoDB; EOG093601Q8; -. DR PhylomeDB; Q9FGV1; -. DR PRO; PR:Q9FGV1; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q9FGV1; baseline and differential. DR Genevisible; Q9FGV1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IGI:TAIR. DR GO; GO:0009733; P:response to auxin; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Activator; Alternative splicing; Auxin signaling pathway; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 811 Auxin response factor 8. FT /FTId=PRO_0000111512. FT DOMAIN 705 789 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 422 551 Gln-rich. FT VAR_SEQ 774 811 Missing (in isoform 2). {ECO:0000305}. FT /FTId=VSP_037313. SQ SEQUENCE 811 AA; 90148 MW; 730564020F8BB134 CRC64; MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS GGLFPQNPTH L // ID Y5014_ARATH Reviewed; 328 AA. AC Q9FHB0; C0SVU9; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 07-JUN-2017, entry version 79. DE RecName: Full=B3 domain-containing protein At5g60140; GN OrderedLocusNames=At5g60140; ORFNames=MGO3.2; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10718197; DOI=10.1093/dnares/7.1.31; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:31-63(2000). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI."; RL Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB10312.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB019231; BAB10312.1; ALT_SEQ; Genomic_DNA. DR EMBL; AB026632; BAB10312.1; JOINED; Genomic_DNA. DR EMBL; CP002688; AED97284.1; -; Genomic_DNA. DR EMBL; AB493802; BAH30640.1; -; mRNA. DR RefSeq; NP_200822.1; NM_125407.4. DR UniGene; At.29182; -. DR ProteinModelPortal; Q9FHB0; -. DR SMR; Q9FHB0; -. DR STRING; 3702.AT5G60140.1; -. DR PaxDb; Q9FHB0; -. DR EnsemblPlants; AT5G60140.1; AT5G60140.1; AT5G60140. DR GeneID; 836136; -. DR Gramene; AT5G60140.1; AT5G60140.1; AT5G60140. DR KEGG; ath:AT5G60140; -. DR Araport; AT5G60140; -. DR TAIR; locus:2164135; AT5G60140. DR eggNOG; ENOG410JP1W; Eukaryota. DR eggNOG; ENOG41119B4; LUCA. DR HOGENOM; HOG000097080; -. DR InParanoid; Q9FHB0; -. DR OMA; DKMICEL; -. DR OrthoDB; EOG09360YM3; -. DR PhylomeDB; Q9FHB0; -. DR PRO; PR:Q9FHB0; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q9FHB0; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 328 B3 domain-containing protein At5g60140. FT /FTId=PRO_0000375150. FT DNA_BIND 13 109 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 140 229 Asp-rich. SQ SEQUENCE 328 AA; 37084 MW; 5D6D1B80BD8FCE9F CRC64; MNTRGNYSNG FTSKFFKPYL PSESGDDLVL PISFNSCLPK SLPKTVTVRS ISGNIWKLGF KKCGGEVERF VMVSGWKKIV RDENLNGGDL LSFEFDGSHF FNFSIFDHET TCKRLKRSSE QSKDIIKVGS DCEEESQASD DVIVLNSDDS DDSDNDYSVE DDNVAEDDDG LEDEVDVEAE DGYDAKDSDG LEDEDDDEAE DGYDAKDDDG LEDEDDLEDE DDERRYLDDH ENPYFTMTLN PKKKSQLHIP AHVIRDYDLT FPERITVVDE MGALEKAIKI QKNGCIFVKG FGSFIRRNKM KMTDKMICEL KRTGGNLVHT IKVKIISG // ID Y5828_ARATH Reviewed; 273 AA. AC Q9FHB2; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 05-JUL-2017, entry version 83. DE RecName: Full=Putative B3 domain-containing protein At5g58280; GN OrderedLocusNames=At5g58280; ORFNames=MCK7.15; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10718197; DOI=10.1093/dnares/7.1.31; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:31-63(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB019228; BAA96919.2; -; Genomic_DNA. DR EMBL; CP002688; AED97028.1; -; Genomic_DNA. DR RefSeq; NP_200636.1; NM_125213.2. DR ProteinModelPortal; Q9FHB2; -. DR SMR; Q9FHB2; -. DR STRING; 3702.AT5G58280.1; -. DR PaxDb; Q9FHB2; -. DR EnsemblPlants; AT5G58280.1; AT5G58280.1; AT5G58280. DR GeneID; 835940; -. DR Gramene; AT5G58280.1; AT5G58280.1; AT5G58280. DR KEGG; ath:AT5G58280; -. DR Araport; AT5G58280; -. DR TAIR; locus:2161228; AT5G58280. DR eggNOG; ENOG410IKPQ; Eukaryota. DR eggNOG; ENOG410YK7R; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; Q9FHB2; -. DR OMA; HECKFAS; -. DR OrthoDB; EOG09360K9G; -. DR PhylomeDB; Q9FHB2; -. DR PRO; PR:Q9FHB2; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q9FHB2; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 273 Putative B3 domain-containing protein FT At5g58280. FT /FTId=PRO_0000375163. FT DNA_BIND 127 218 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 237 243 Poly-Glu. SQ SEQUENCE 273 AA; 31674 MW; 3F1AF157CBDB7A20 CRC64; MAMAYEEARK LRLQENHKRF QSNFVALPQF QLLQQRNHKP IDKALLATAE PRRSSRVRTV ISSYRDDVVV DTGRTSNLRR SRHSSTWATY ISRPLHECKF ASYEEKVGAF KAAEKFQRSL KSPHPYFVKS MVRSHVYSCF WLGLPSRFCA DNFPEETMEI ELEDEEGEVY EAVYIGRRAG LSGGWKRFAL DHKLDDGDAL LFELVEPKKF KIYVFKGNEN ANLTSARKRG RATTPSEEEE EEEDKDVEES GDEEHSSRAT KRSSVRLLRK RKA // ID Y5772_ARATH Reviewed; 300 AA. AC Q9FHH1; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 12-APR-2017, entry version 78. DE RecName: Full=B3 domain-containing protein At5g57720; GN OrderedLocusNames=At5g57720; ORFNames=MRI1.8; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10470850; DOI=10.1093/dnares/6.3.183; RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Kotani H., RA Miyajima N., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. IX. RT Sequence features of the regions of 1,011,550 bp covered by seventeen RT P1 and TAC clones."; RL DNA Res. 6:183-195(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB018118; BAB09590.1; -; Genomic_DNA. DR EMBL; CP002688; AED96942.1; -; Genomic_DNA. DR EMBL; AB493797; BAH30635.1; -; mRNA. DR RefSeq; NP_200580.1; NM_125155.3. DR UniGene; At.55606; -. DR ProteinModelPortal; Q9FHH1; -. DR SMR; Q9FHH1; -. DR STRING; 3702.AT5G57720.1; -. DR PaxDb; Q9FHH1; -. DR EnsemblPlants; AT5G57720.1; AT5G57720.1; AT5G57720. DR GeneID; 835879; -. DR Gramene; AT5G57720.1; AT5G57720.1; AT5G57720. DR KEGG; ath:AT5G57720; -. DR Araport; AT5G57720; -. DR TAIR; locus:2172590; AT5G57720. DR eggNOG; ENOG410JX4P; Eukaryota. DR eggNOG; ENOG41104AV; LUCA. DR HOGENOM; HOG000097078; -. DR InParanoid; Q9FHH1; -. DR OMA; KIFNSHE; -. DR OrthoDB; EOG09360YM3; -. DR PhylomeDB; Q9FHH1; -. DR PRO; PR:Q9FHH1; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q9FHH1; baseline and differential. DR Genevisible; Q9FHH1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 300 B3 domain-containing protein At5g57720. FT /FTId=PRO_0000375160. FT DNA_BIND 11 105 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 121 170 Asp-rich. SQ SEQUENCE 300 AA; 34399 MW; 848711E2FF7D273B CRC64; MVLENGFPPY PDFLKIFNSH EDSQLLVIPR SYNRYYPNPL PQTAVLKNPE GRFWNVQWTK SQEVIISLQE GWVKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRNGLPLEP TAPIKIQEIS DDEDETNGDG DPHMEEEGDT DENMIVSLSL GSSDEVGDDD DDDYDTAICD EVNKASGSSK KGRVTRKHRD DSLASITPQI FLADPNNPFF ISTSSCSRRI LVIARQVIKD YGLNFDGTVN LIDGFGELTR KVGKWKDRVV IYKWNEMFTR NKVKQGDVII CEIIREEDVV RSIKVHFVKN // ID Y5800_ARATH Reviewed; 307 AA. AC Q9FJG2; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 12-APR-2017, entry version 88. DE RecName: Full=B3 domain-containing protein At5g18000; GN OrderedLocusNames=At5g18000; ORFNames=MCM23.7; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=9872454; DOI=10.1093/dnares/5.5.297; RA Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. VII. RT Sequence features of the regions of 1,013,767 bp covered by sixteen RT physically assigned P1 and TAC clones."; RL DNA Res. 5:297-308(1998). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB015473; BAB08399.1; -; Genomic_DNA. DR EMBL; CP002688; AED92494.1; -; Genomic_DNA. DR EMBL; AK227035; BAE99096.1; -; mRNA. DR RefSeq; NP_197301.1; NM_121805.3. DR UniGene; At.19968; -. DR UniGene; At.71230; -. DR ProteinModelPortal; Q9FJG2; -. DR STRING; 3702.AT5G18000.1; -. DR PaxDb; Q9FJG2; -. DR EnsemblPlants; AT5G18000.1; AT5G18000.1; AT5G18000. DR GeneID; 831667; -. DR Gramene; AT5G18000.1; AT5G18000.1; AT5G18000. DR KEGG; ath:AT5G18000; -. DR Araport; AT5G18000; -. DR TAIR; locus:2161533; AT5G18000. DR eggNOG; ENOG410JKB4; Eukaryota. DR eggNOG; ENOG41113KV; LUCA. DR HOGENOM; HOG000131629; -. DR InParanoid; Q9FJG2; -. DR OMA; FTHEANM; -. DR OrthoDB; EOG09360JYT; -. DR PhylomeDB; Q9FJG2; -. DR PRO; PR:Q9FJG2; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q9FJG2; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009567; P:double fertilization forming a zygote and endosperm; IMP:TAIR. DR GO; GO:0009553; P:embryo sac development; IMP:TAIR. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 307 B3 domain-containing protein At5g18000. FT /FTId=PRO_0000375161. FT DNA_BIND 20 115 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 214 307 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 307 AA; 35727 MW; 23CDB6C127CE90D1 CRC64; MVKNKAFFGQ IMEERDNPAF FKILRREDHS TEMMRMIPHH LIRSISDKSS SFKMVLRVPW GRSWQVKISK NPNFHYMEDR GWNQFVNDNG LGENEYLTFT HEANMCFNVT IFEADGTEML RPRKTITSSS GRNKREERKS IYKDVKKEEE IESWSESSHP CHKTAESTSG RLTQKQELNL RKKEADKTEK SKTSKKKKVE TVSNDSEAGT SSLIPEFKLT IKKSHLLFLG IPKKFVDMHM PTETTMFKIH YPRGKKSWDV TYVVTDVQSR FSGGWSRLAK ELGLLVGDVC TFKLIKPTEM RVKVSKE // ID Y5809_ARATH Reviewed; 301 AA. AC Q9FK61; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 07-JUN-2017, entry version 87. DE RecName: Full=B3 domain-containing protein At5g18090; GN OrderedLocusNames=At5g18090; ORFNames=MRG7.5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=9734815; DOI=10.1093/dnares/5.3.203; RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. RT Sequence features of the regions of 1,367,185 bp covered by 19 RT physically assigned P1 and TAC clones."; RL DNA Res. 5:203-216(1998). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., RA Feldmann K.A.; RT "Full-length cDNA from Arabidopsis thaliana."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB012246; BAB09467.1; -; Genomic_DNA. DR EMBL; CP002688; AED92505.1; -; Genomic_DNA. DR EMBL; BT004099; AAO42124.1; -; mRNA. DR EMBL; BT005553; AAO63973.1; -; mRNA. DR EMBL; AY087853; AAM67335.1; -; mRNA. DR RefSeq; NP_197310.1; NM_121814.3. DR UniGene; At.31471; -. DR ProteinModelPortal; Q9FK61; -. DR STRING; 3702.AT5G18090.1; -. DR iPTMnet; Q9FK61; -. DR PaxDb; Q9FK61; -. DR EnsemblPlants; AT5G18090.1; AT5G18090.1; AT5G18090. DR GeneID; 831636; -. DR Gramene; AT5G18090.1; AT5G18090.1; AT5G18090. DR KEGG; ath:AT5G18090; -. DR Araport; AT5G18090; -. DR TAIR; locus:2172319; AT5G18090. DR eggNOG; ENOG410JPPK; Eukaryota. DR eggNOG; ENOG41118R3; LUCA. DR HOGENOM; HOG000131629; -. DR InParanoid; Q9FK61; -. DR OMA; GSSWRID; -. DR OrthoDB; EOG09360JYT; -. DR PhylomeDB; Q9FK61; -. DR PRO; PR:Q9FK61; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q9FK61; baseline and differential. DR Genevisible; Q9FK61; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 301 B3 domain-containing protein At5g18090. FT /FTId=PRO_0000375162. FT DNA_BIND 18 113 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 209 301 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 186 193 Poly-Lys. SQ SEQUENCE 301 AA; 34675 MW; C3BC43D551E4E8C8 CRC64; MKNKAFGQIM DDAENPGFFK ILRSADLSSE IMRGIPLNFI KSISEEELSA KMLLKVSWGS SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NDEFLTFTHQ GNMCFTVDIY QIDGKELLTP RRSATIASSS GRNKREQRNN IYKDVKEEED IESWSESSYP GHKTAESTGR RQRLSLSNKK AKETEKSKKK KMKVESISYD SQDDSLSLVP EFTLTIKKSY LIFLGIPKMF EELHMPTEAT MFKIHDPEGK RSWDVMYKFS NNQTRFCAGW IRLAKELGLE IGDVCTFTLI KPTEMLVRVS K // ID Y5270_ARATH Reviewed; 211 AA. AC Q9FMZ4; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 07-JUN-2017, entry version 77. DE RecName: Full=B3 domain-containing protein At5g42700; GN OrderedLocusNames=At5g42700; ORFNames=MJB21.7; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=9501997; DOI=10.1093/dnares/4.6.401; RA Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. III. RT Sequence features of the regions of 1,191,918 bp covered by seventeen RT physically assigned P1 clones."; RL DNA Res. 4:401-414(1997). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB10626.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB007647; BAB10626.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002688; AED94851.1; -; Genomic_DNA. DR RefSeq; NP_001318733.1; NM_001344459.1. DR UniGene; At.30157; -. DR ProteinModelPortal; Q9FMZ4; -. DR SMR; Q9FMZ4; -. DR STRING; 3702.AT5G42700.1; -. DR PaxDb; Q9FMZ4; -. DR GeneID; 834279; -. DR KEGG; ath:AT5G42700; -. DR Araport; AT5G42700; -. DR TAIR; locus:2165497; AT5G42700. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR HOGENOM; HOG000239798; -. DR InParanoid; Q9FMZ4; -. DR OMA; MPAPVYK; -. DR OrthoDB; EOG09360M6G; -. DR PhylomeDB; Q9FMZ4; -. DR PRO; PR:Q9FMZ4; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q9FMZ4; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 211 B3 domain-containing protein At5g42700. FT /FTId=PRO_0000375152. FT DNA_BIND 110 201 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 211 AA; 24058 MW; C1A6A2A780DFCA1C CRC64; MVVEKQTKYE EFRLKRVEEN KKRMEALNLP KLSQILNSTS VKISPMKKRS IPRTPEKKMV DVKRVHIQRR GVGKKRDLLN RVYVSEEIRD EAISRANKFQ DELGSGYPSF VKSMLQSHVS GGFWLGLPVQ FCKSHLGLHD GVITLIDEEG EEYETIYLAR KNGLSGGWMG FAVAHNLAYG DTLVFELVRR TAFKVYITRV GSCGESSKDM S // ID Y5625_ARATH Reviewed; 282 AA. AC Q9FNI3; B3H5L5; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 05-JUL-2017, entry version 84. DE RecName: Full=B3 domain-containing protein At5g06250; GN OrderedLocusNames=At5g06250; ORFNames=MHF15.23; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=9405937; DOI=10.1093/dnares/4.4.291; RA Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. II. RT Sequence features of the regions of 1,044,062 bp covered by thirteen RT physically assigned P1 clones."; RL DNA Res. 4:291-300(1997). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9FNI3-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9FNI3-2; Sequence=VSP_037336; CC Note=Derived from EST data. May be due to a competing donor CC splice site. No experimental confirmation available.; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB006700; BAB08947.1; -; Genomic_DNA. DR EMBL; CP002688; AED90990.1; -; Genomic_DNA. DR EMBL; CP002688; AED90991.1; -; Genomic_DNA. DR RefSeq; NP_001119177.1; NM_001125705.2. [Q9FNI3-1] DR RefSeq; NP_196243.2; NM_120707.2. [Q9FNI3-2] DR UniGene; At.54745; -. DR ProteinModelPortal; Q9FNI3; -. DR BioGrid; 15791; 1. DR STRING; 3702.AT5G06250.2; -. DR PaxDb; Q9FNI3; -. DR PRIDE; Q9FNI3; -. DR EnsemblPlants; AT5G06250.2; AT5G06250.2; AT5G06250. [Q9FNI3-1] DR GeneID; 830512; -. DR Gramene; AT5G06250.2; AT5G06250.2; AT5G06250. [Q9FNI3-1] DR KEGG; ath:AT5G06250; -. DR Araport; AT5G06250; -. DR TAIR; locus:2164215; AT5G06250. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q9FNI3; -. DR OMA; PPSHSEY; -. DR OrthoDB; EOG09360P7Z; -. DR PhylomeDB; Q9FNI3; -. DR PRO; PR:Q9FNI3; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q9FNI3; baseline and differential. DR Genevisible; Q9FNI3; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0048366; P:leaf development; IGI:TAIR. DR GO; GO:0010358; P:leaf shaping; IGI:TAIR. DR GO; GO:0010073; P:meristem maintenance; IMP:TAIR. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:TAIR. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 282 B3 domain-containing protein At5g06250. FT /FTId=PRO_0000375158. FT DNA_BIND 46 159 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 190 205 SNYSNPPSHSEYSHYG -> R (in isoform 2). FT {ECO:0000305}. FT /FTId=VSP_037336. SQ SEQUENCE 282 AA; 31649 MW; F8C230C8BC6D9F35 CRC64; MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMVILT LL // ID ARFM_ARATH Reviewed; 621 AA. AC Q9FX25; Q5IRM9; Q5IRX4; Q9XIC3; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 29-MAY-2007, sequence version 3. DT 05-JUL-2017, entry version 100. DE RecName: Full=Auxin response factor 13; GN Name=ARF13; OrderedLocusNames=At1g34170; ORFNames=F12G12.1, F23M19.15; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2 AND 3). RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; CC IsoId=Q9FX25-1; Sequence=Displayed; CC Note=Constructed according to the conserved gene model. No CC experimental confirmation available.; CC Name=2; CC IsoId=Q9FX25-2; Sequence=VSP_025787, VSP_025788; CC Note=No experimental confirmation available.; CC Name=3; CC IsoId=Q9FX25-3; Sequence=VSP_025786, VSP_025787, VSP_025788; CC Note=No experimental confirmation available.; CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD39616.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=AAG12520.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY669793; AAT67077.1; -; mRNA. DR EMBL; AY680406; AAT77165.1; -; mRNA. DR EMBL; AC007454; AAD39616.1; ALT_SEQ; Genomic_DNA. DR EMBL; AC015446; AAG12520.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE31679.1; -; Genomic_DNA. DR EMBL; CP002684; AEE31680.1; -; Genomic_DNA. DR PIR; H86465; H86465. DR RefSeq; NP_001031139.1; NM_001036062.1. [Q9FX25-3] DR RefSeq; NP_174679.3; NM_103140.3. [Q9FX25-2] DR UniGene; At.51184; -. DR ProteinModelPortal; Q9FX25; -. DR SMR; Q9FX25; -. DR BioGrid; 25548; 2. DR IntAct; Q9FX25; 1. DR GeneID; 840316; -. DR KEGG; ath:AT1G34170; -. DR Araport; AT1G34170; -. DR HOGENOM; HOG000241141; -. DR PhylomeDB; Q9FX25; -. DR PRO; PR:Q9FX25; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9FX25; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 621 Auxin response factor 13. FT /FTId=PRO_0000111517. FT DOMAIN 508 600 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 124 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 269 294 Missing (in isoform 3). FT {ECO:0000303|PubMed:15659631}. FT /FTId=VSP_025786. FT VAR_SEQ 481 505 LPQDKKFDQTQPLRSPKEVQSTEFN -> EISKLKNQKATT FT SCLKIKSLTKPNL (in isoform 2 and isoform FT 3). {ECO:0000303|PubMed:15659631}. FT /FTId=VSP_025787. FT VAR_SEQ 506 621 Missing (in isoform 2 and isoform 3). FT {ECO:0000303|PubMed:15659631}. FT /FTId=VSP_025788. SQ SEQUENCE 621 AA; 70995 MW; 7876C26E55A58AAF CRC64; MENNGEMNAQ PELSVDITKT YMYEKLWNIC AGPLCVLPKP GEKVYYFPQG HIELIENSTR DELDHIRPIF DLPSKLRCRV VAIDRKVDKN TDEVYAQISL MPDTTEVMTH NTTMDTRRPI VYFFSKILTA SDVSLSGGLI IPKQYAIECF PPLDMSQPIS TQNLVAKDLY GQEWSFKHVF RGTPQRHMFT SGGGWSVFAT TKRLIVGDIF VLLRGENGEL RFGIRRAKHQ QGHIPSSVIS ANCMQHGVIA SVVNAFKTKC MFNVVYKPSS SQFVISYDKF VDAMNNNYIV GSRFRMQFEG KDFSEKRYDG TIIGVNDMSP HWKDSEWRSL KVQWDELSPF LRPNQVSPWD IEHLIPSSDI SQSSLKKKKH WLQLNEIGAT LSNLWTCQEI GQRSMNSPIS VPEFSYPNAI EDSKFLSGLL LNHSLLAIPN ENYNSDQMIQ PRKEDITTEA TTSCLLFGVD LTKVSKSKDS ICPIESCKKS LPQDKKFDQT QPLRSPKEVQ STEFNFTRSR IKVHMQGVAI SRAVDLTAMH GYNQLIQKLE ELFDLKDELR TRNQWEIVFT NNEGAEMLVG DDPWPEFCNM AKRIFICSKE EIKKMKLKNK FFQPESKALT SSDVPPNVTD N // ID Y1664_ARATH Reviewed; 134 AA. AC Q9FX77; DT 24-JAN-2006, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 07-JUN-2017, entry version 88. DE RecName: Full=B3 domain-containing protein At1g16640; GN OrderedLocusNames=At1g16640; ORFNames=F19K19.7; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.; RT "Arabidopsis cDNA clones."; RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [5] RP STRUCTURE BY NMR OF 1-102. RX PubMed=16081658; DOI=10.1110/ps.051606305; RA Waltner J.K., Peterson F.C., Lytle B.L., Volkman B.F.; RT "Structure of the B3 domain from Arabidopsis thaliana protein RT At1g16640."; RL Protein Sci. 14:2478-2483(2005). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- MISCELLANEOUS: Putative DNA-binding elements conserved in B3 CC domains from the RAV, ARF and ABI3/VP1 subfamilies are largely CC absent in At1g16640, suggesting that B3 domains could function in CC contexts other than transcriptional regulation. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC011808; AAG10819.1; -; Genomic_DNA. DR EMBL; CP002684; AEE29479.1; -; Genomic_DNA. DR EMBL; BT012511; AAS99655.1; -; mRNA. DR EMBL; BT014811; AAT41794.1; -; mRNA. DR PIR; E86301; E86301. DR RefSeq; NP_173109.1; NM_101525.4. DR UniGene; At.41877; -. DR PDB; 1YEL; NMR; -; A=1-102. DR PDBsum; 1YEL; -. DR ProteinModelPortal; Q9FX77; -. DR SMR; Q9FX77; -. DR STRING; 3702.AT1G16640.1; -. DR PaxDb; Q9FX77; -. DR DNASU; 838233; -. DR EnsemblPlants; AT1G16640.1; AT1G16640.1; AT1G16640. DR GeneID; 838233; -. DR Gramene; AT1G16640.1; AT1G16640.1; AT1G16640. DR KEGG; ath:AT1G16640; -. DR Araport; AT1G16640; -. DR TAIR; locus:2017953; AT1G16640. DR eggNOG; ENOG410JW62; Eukaryota. DR eggNOG; ENOG411058H; LUCA. DR HOGENOM; HOG000097068; -. DR InParanoid; Q9FX77; -. DR OMA; FISHKSA; -. DR OrthoDB; EOG09360V85; -. DR PhylomeDB; Q9FX77; -. DR EvolutionaryTrace; Q9FX77; -. DR PRO; PR:Q9FX77; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; Q9FX77; baseline and differential. DR Genevisible; Q9FX77; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 134 B3 domain-containing protein At1g16640. FT /FTId=PRO_0000111530. FT DNA_BIND 7 100 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 122 125 Poly-Glu. FT STRAND 7 12 {ECO:0000244|PDB:1YEL}. FT HELIX 15 18 {ECO:0000244|PDB:1YEL}. FT HELIX 26 29 {ECO:0000244|PDB:1YEL}. FT STRAND 38 44 {ECO:0000244|PDB:1YEL}. FT STRAND 49 57 {ECO:0000244|PDB:1YEL}. FT STRAND 60 63 {ECO:0000244|PDB:1YEL}. FT HELIX 67 74 {ECO:0000244|PDB:1YEL}. FT STRAND 81 86 {ECO:0000244|PDB:1YEL}. FT STRAND 88 97 {ECO:0000244|PDB:1YEL}. SQ SEQUENCE 134 AA; 15792 MW; 146A087FF9E62C92 CRC64; MADTGEVQFM KPFISEKSSK SLEIPLGFNE YFPAPFPITV DLLDYSGRSW TVRMKKRGEK VFLTVGWENF VKDNNLEDGK YLQFIYDRDR TFYVIIYGHN MCSEYRDFPQ VAVEVDDYEN GEEEEDGDDQ DKHQ // ID Y3852_ARATH Reviewed; 120 AA. AC Q9LH88; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 10-MAY-2017, entry version 67. DE RecName: Full=Putative B3 domain-containing protein At3g28853; GN OrderedLocusNames=At3g28853; ORFNames=T19N8.16; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10907853; DOI=10.1093/dnares/7.3.217; RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. RT Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC RT and BAC clones."; RL DNA Res. 7:217-221(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP002057; BAB03184.1; -; Genomic_DNA. DR EMBL; CP002686; ANM64405.1; -; Genomic_DNA. DR RefSeq; NP_001326435.1; NM_001338972.1. DR ProteinModelPortal; Q9LH88; -. DR EnsemblPlants; AT3G28853.1; AT3G28853.1; AT3G28853. DR GeneID; 28719334; -. DR Gramene; AT3G28853.1; AT3G28853.1; AT3G28853. DR KEGG; ath:AT3G28853; -. DR Araport; AT3G28853; -. DR InParanoid; Q9LH88; -. DR PRO; PR:Q9LH88; -. DR Proteomes; UP000006548; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 120 Putative B3 domain-containing protein FT At3g28853. FT /FTId=PRO_0000412855. FT DNA_BIND 19 120 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 120 AA; 14459 MW; 3B2D7FFBA8A62B4B CRC64; MADNIDLELS LQTNHSMIIN KRLTQSDVDY NNRLHLPKRE FEQFILPEME WELVMNLRNS VEVIVKDVNG NEYHVTLVKY QNGHYYFMGK WMDIVRAKGY KRDDEISLLW DKSNEVFYII // ID Y6112_ORYSJ Reviewed; 175 AA. AC Q9LHY9; A0A0P0WS72; DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 12-APR-2017, entry version 82. DE RecName: Full=B3 domain-containing protein Os06g0112300; GN OrderedLocusNames=Os06g0112300, LOC_Os06g02230; GN ORFNames=OsJ_19871, P0029D06.25; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., RA McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., RA Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., RA Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., RA Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using RT next generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12869764; DOI=10.1126/science.1081288; RG The rice full-length cDNA consortium; RT "Collection, mapping, and annotation of over 28,000 cDNA clones from RT japonica rice."; RL Science 301:376-379(2003). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AP001552; BAA93035.1; -; Genomic_DNA. DR EMBL; AP008212; BAF18507.1; -; Genomic_DNA. DR EMBL; AP014962; BAS95803.1; -; Genomic_DNA. DR EMBL; CM000143; EAZ35585.1; -; Genomic_DNA. DR EMBL; AK106920; BAG97881.1; -; mRNA. DR RefSeq; XP_015643738.1; XM_015788252.1. DR RefSeq; XP_015643739.1; XM_015788253.1. DR UniGene; Os.20309; -. DR SMR; Q9LHY9; -. DR PaxDb; Q9LHY9; -. DR EnsemblPlants; OS06T0112300-01; OS06T0112300-01; OS06G0112300. DR GeneID; 4339899; -. DR Gramene; OS06T0112300-01; OS06T0112300-01; OS06G0112300. DR KEGG; osa:4339899; -. DR eggNOG; ENOG410J0J6; Eukaryota. DR eggNOG; ENOG410YWR9; LUCA. DR InParanoid; Q9LHY9; -. DR OMA; TILEPCE; -. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000059680; Chromosome 6. DR Genevisible; Q9LHY9; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 175 B3 domain-containing protein FT Os06g0112300. FT /FTId=PRO_0000376971. FT DNA_BIND 56 154 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 175 AA; 18877 MW; FEC608C6F1838179 CRC64; MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPPPPASGSG EDWEATTPLA AGNPFFTALI AKSHLHPKFQ MWIPPRFQHR LAEPEARTAA VLHSGGKSWA TSYCGHLKMK KLDAGWSEFA VDNRLLVGDA CVFELVAMGA AGGLEFQVQI LRGGLPAEVV TSKGLTSDQP ILIVD // ID ARFW_ARATH Reviewed; 222 AA. AC Q9LP07; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 12-APR-2017, entry version 101. DE RecName: Full=Putative auxin response factor 23; GN Name=ARF23; OrderedLocusNames=At1g43950; ORFNames=F9C16.11; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that binds specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- CAUTION: Could be the product of a pseudogene. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF79686.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC022314; AAF79686.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE32008.1; -; Genomic_DNA. DR PIR; E96503; E96503. DR RefSeq; NP_175062.1; NM_103522.1. DR UniGene; At.52022; -. DR ProteinModelPortal; Q9LP07; -. DR SMR; Q9LP07; -. DR STRING; 3702.AT1G43950.1; -. DR PaxDb; Q9LP07; -. DR EnsemblPlants; AT1G43950.1; AT1G43950.1; AT1G43950. DR GeneID; 840994; -. DR Gramene; AT1G43950.1; AT1G43950.1; AT1G43950. DR KEGG; ath:AT1G43950; -. DR Araport; AT1G43950; -. DR TAIR; locus:2037169; AT1G43950. DR HOGENOM; HOG000241141; -. DR InParanoid; Q9LP07; -. DR OMA; PTENENQ; -. DR OrthoDB; EOG093601Q8; -. DR PhylomeDB; Q9LP07; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9LP07; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 5: Uncertain; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 222 Putative auxin response factor 23. FT /FTId=PRO_0000111527. FT DNA_BIND 126 222 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 222 AA; 24821 MW; 3C20C2273F400CEF CRC64; MESGNVVNVQ SELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVEAS TREELNELQP NCDLPSKLQC RVIAIHLKVE NNSDETYVEI TLMPDTTQVV IPTENENQFR PIVNSFTKVL TASDTSAQGE FSVPCKHAIE CLPPLDMSQP IPAQELIAID LHGNQWRFKH SYRVPRGDTT GWNAFTTSKK LVVGDVIVFA RGETGELRVG IR // ID ARFO_ARATH Reviewed; 593 AA. AC Q9LQE3; F4HYE3; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 107. DE RecName: Full=Putative auxin response factor 15; GN Name=ARF15; OrderedLocusNames=At1g35520; ORFNames=F15O4.42; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF79360.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007887; AAF79360.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE31805.2; -; Genomic_DNA. DR RefSeq; NP_001319151.1; NM_001333160.1. DR ProteinModelPortal; Q9LQE3; -. DR SMR; Q9LQE3; -. DR BioGrid; 25679; 2. DR MINT; MINT-8067881; -. DR STRING; 3702.AT1G35520.1; -. DR PaxDb; Q9LQE3; -. DR PRIDE; Q9LQE3; -. DR EnsemblPlants; AT1G35520.1; AT1G35520.1; AT1G35520. DR GeneID; 840447; -. DR Gramene; AT1G35520.1; AT1G35520.1; AT1G35520. DR KEGG; ath:AT1G35520; -. DR Araport; AT1G35520; -. DR HOGENOM; HOG000241141; -. DR OrthoDB; EOG093612K8; -. DR PhylomeDB; Q9LQE3; -. DR PRO; PR:Q9LQE3; -. DR Proteomes; UP000006548; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 593 Putative auxin response factor 15. FT /FTId=PRO_0000111519. FT DOMAIN 511 592 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 593 AA; 67421 MW; 8A47C28A808953AC CRC64; METGNVVNAQ PELSGIIDRS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGNIELVEAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAKI TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDISANGV FSVPKKHAIE CLPPLDMSQP LPAQELLAID LHGNQWSFRH SYRGTPQRHL LTTGWNEFTT SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC MFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG DDLSERRYFG TIIGVSNFSP HWKCSDWRSL EVQWDEFASF LRPNKVSPWE IEHLMPALNV PRSSFLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV ASPMNISLLY RETTEDAMNP SRLLMSYPVQ PMPKRNYNNQ MVTQIEENIT TKAGTNFRLF GVSLATPPVI KDPIEQIGSD ISKLTEGKKF GQSQTLRSPT KIQSKQFSST RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDLKG QLQTRNQWKI IFTGSDEDEM LVGDDPWPEF CNMVKRIYIQ KRR // ID ARFN_ARATH Reviewed; 605 AA. AC Q9LQE8; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 110. DE RecName: Full=Putative auxin response factor 14; GN Name=ARF14; OrderedLocusNames=At1g35540; ORFNames=F15O4.37; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF79371.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007887; AAF79371.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE31809.1; -; Genomic_DNA. DR PIR; G86476; G86476. DR RefSeq; NP_174786.1; NM_103250.1. DR UniGene; At.39556; -. DR ProteinModelPortal; Q9LQE8; -. DR SMR; Q9LQE8; -. DR BioGrid; 25682; 2. DR IntAct; Q9LQE8; 1. DR STRING; 3702.AT1G35540.1; -. DR PaxDb; Q9LQE8; -. DR PRIDE; Q9LQE8; -. DR EnsemblPlants; AT1G35540.1; AT1G35540.1; AT1G35540. DR GeneID; 840450; -. DR Gramene; AT1G35540.1; AT1G35540.1; AT1G35540. DR KEGG; ath:AT1G35540; -. DR Araport; AT1G35540; -. DR TAIR; locus:2014731; AT1G35540. DR HOGENOM; HOG000241141; -. DR OMA; VNADNKF; -. DR OrthoDB; EOG093612K8; -. DR PhylomeDB; Q9LQE8; -. DR PRO; PR:Q9LQE8; -. DR Proteomes; UP000006548; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 605 Putative auxin response factor 14. FT /FTId=PRO_0000111518. FT DOMAIN 510 602 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 605 AA; 68618 MW; 629D3B40BED65A24 CRC64; MESGNVVNTQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVEAS TREELNELQP ICDFPSKLQC RVIAIQLKVE NNSDETYAEI TLMPDTTQVV IPTQNQNQFR PLVNSFTKVL TASDTSVHGG FSVPKKHAIE CLPPLDMSQP LPTQEILAID LHGNQWRFRH IYRGTAQRHL LTIGWNAFTT SKKLVEGDVI VFVRGETGEL RVGIRRAGHQ QGNIPSSIVS IESMRHGIIA SAKHAFDNQC MFIVVYKPRS SQFIVSYDKF LDVVNNKFNV GSRFTMRFEG DDFSERRSFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF PRPNQVSPWD IEHLTPWSNV SRSSFLKNKR SREVNEIGSS SSHLLPPTLT QGQEIGQQSM ATPMNISLRY RDITEDAMTP SRLLMSYPVQ PMAKLNYNNV VTPIEENITT NAVASFRLFG VSLATPSVIK DPVEQIGLEI SRLTQEKKFG QSQILRSPTE IQSKQFSSTR TCTKVQMQGV TIGRAVDLSV LNGYDQLILE LEKLFDLKGQ LQARNQWEIA FTNNEEDKML VGEDPWPEFC NMVKKIFIYS KEEVKNLKSR KSLSS // ID RAVL4_ARATH Reviewed; 333 AA. AC Q9LS06; Q8LAA3; DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 07-JUN-2017, entry version 107. DE RecName: Full=AP2/ERF and B3 domain-containing transcription factor ARF14; DE AltName: Full=Protein AUXIN RESPONSE FACTOR 14; DE AltName: Full=RAV1-like ethylene-responsive transcription factor ARF14; GN Name=ARF14; OrderedLocusNames=At3g25730; ORFNames=K13N2.14, K13N2.7; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RA Carabelli M., Ciarbelli A.R., Ruzza V., Sessa G., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the putative Arabidopsis ARF14."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10819329; DOI=10.1093/dnares/7.2.131; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:131-135(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., RA Feldmann K.A.; RT "Full-length cDNA from Arabidopsis thaliana."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [6] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=16407444; DOI=10.1104/pp.105.073783; RA Nakano T., Suzuki K., Fujimura T., Shinshi H.; RT "Genome-wide analysis of the ERF gene family in Arabidopsis and RT rice."; RL Plant Physiol. 140:411-432(2006). RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to CC the GCC-box pathogenesis-related promoter element. May be involved CC in the regulation of gene expression by stress factors and by CC components of stress signal transduction pathways (By similarity). CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. CC RAV subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AJ441073; CAD29641.1; -; mRNA. DR EMBL; AB028607; BAA95760.1; -; Genomic_DNA. DR EMBL; CP002686; AEE77062.1; -; Genomic_DNA. DR EMBL; AK229415; BAF01276.1; -; mRNA. DR EMBL; AY087951; AAM65499.1; -; mRNA. DR RefSeq; NP_189201.1; NM_113472.4. DR UniGene; At.37331; -. DR ProteinModelPortal; Q9LS06; -. DR SMR; Q9LS06; -. DR STRING; 3702.AT3G25730.1; -. DR PaxDb; Q9LS06; -. DR EnsemblPlants; AT3G25730.1; AT3G25730.1; AT3G25730. DR GeneID; 822164; -. DR Gramene; AT3G25730.1; AT3G25730.1; AT3G25730. DR KEGG; ath:AT3G25730; -. DR Araport; AT3G25730; -. DR TAIR; locus:2085969; AT3G25730. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR KO; K09287; -. DR OMA; KHTYLDE; -. DR OrthoDB; EOG09360IAF; -. DR PhylomeDB; Q9LS06; -. DR PRO; PR:Q9LS06; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q9LS06; baseline and differential. DR Genevisible; Q9LS06; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IPI:TAIR. DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Activator; Complete proteome; DNA-binding; Ethylene signaling pathway; KW Nucleus; Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 333 AP2/ERF and B3 domain-containing FT transcription factor ARF14. FT /FTId=PRO_0000290436. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 183 289 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 329 329 K -> N (in Ref. 5; AAM65499). FT {ECO:0000305}. SQ SEQUENCE 333 AA; 37756 MW; 7672FBB33B193493 CRC64; MDAMSSVDES STTTDSIPAR KSSSPASLLY RMGSGTSVVL DSENGVEVEV EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAAHRFRGRD AVTNFKDTTF EEEVEFLNAH SKSEIVDMLR KHTYKEELDQ RKRNRDGNGK ETTAFALASM VVMTGFKTAE LLFEKTVTPS DVGKLNRLVI PKHQAEKHFP LPLGNNNVSV KGMLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNDQDQK FFIGWKSKSG LDLETGRVMR LFGVDISLNA VVVVKETTEV LMSSLRCKKQ RVL // ID Y3701_ARATH Reviewed; 302 AA. AC Q9LSP6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 07-JUN-2017, entry version 86. DE RecName: Full=B3 domain-containing protein At3g17010; GN OrderedLocusNames=At3g17010; ORFNames=K14A17.8; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10819329; DOI=10.1093/dnares/7.2.131; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:131-135(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB026636; BAA94979.1; -; Genomic_DNA. DR EMBL; CP002686; AEE75894.1; -; Genomic_DNA. DR EMBL; AB493618; BAH30456.1; -; mRNA. DR RefSeq; NP_188326.1; NM_112577.3. DR UniGene; At.38804; -. DR ProteinModelPortal; Q9LSP6; -. DR STRING; 3702.AT3G17010.1; -. DR PaxDb; Q9LSP6; -. DR PRIDE; Q9LSP6; -. DR DNASU; 820957; -. DR EnsemblPlants; AT3G17010.1; AT3G17010.1; AT3G17010. DR GeneID; 820957; -. DR Gramene; AT3G17010.1; AT3G17010.1; AT3G17010. DR KEGG; ath:AT3G17010; -. DR Araport; AT3G17010; -. DR TAIR; locus:2086082; AT3G17010. DR eggNOG; ENOG410JESD; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR HOGENOM; HOG000131629; -. DR InParanoid; Q9LSP6; -. DR OMA; FITFTHR; -. DR OrthoDB; EOG09360LIQ; -. DR PhylomeDB; Q9LSP6; -. DR PRO; PR:Q9LSP6; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q9LSP6; baseline and differential. DR Genevisible; Q9LSP6; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 302 B3 domain-containing protein At3g17010. FT /FTId=PRO_0000375142. FT DNA_BIND 21 116 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 292 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 166 193 Lys-rich. SQ SEQUENCE 302 AA; 35287 MW; 429D33AA82DBD9BC CRC64; MGKSSNIVFD RIKEERQMLS FFKIFQRADL SSDCMRALPY SFISKVSEKD FSYKMVIRAQ WGKTWDVEVS KNPTYYYIET RGWDLFVSDN ALGQNEFITF THRGNMVFHV NIYEQNGLEM RKPRKFQTMG PSSGIKKEEG ENSLIDVKKE EESDESPGRA EFLVRKKKTE DSKSSKKKMT RNKVKKKSKS KSKQVLDGVP EFKITIRKSY LKFLAIPKHF VDDHIPNKSK IFTIRHPNGG SWKVLCLVRE IRTIFSGGYS KLAREFPLMV GDKCTFKLIK PFEFVLLTSK KNREKMDQCM ID // ID Y5142_ARATH Reviewed; 346 AA. AC Q9LST3; F4JXH4; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 16-NOV-2011, sequence version 3. DT 05-JUL-2017, entry version 71. DE RecName: Full=B3 domain-containing protein At5g60142; GN OrderedLocusNames=At5g60142; ORFNames=F15L12; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI."; RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases. RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAA97494.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB026632; BAA97494.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002688; AED97285.1; -; Genomic_DNA. DR RefSeq; NP_001119463.2; NM_001125991.3. DR RefSeq; NP_001331554.1; NM_001345399.1. DR UniGene; At.69355; -. DR ProteinModelPortal; Q9LST3; -. DR SMR; Q9LST3; -. DR STRING; 3702.AT5G60142.1; -. DR PaxDb; Q9LST3; -. DR EnsemblPlants; AT5G60142.1; AT5G60142.1; AT5G60142. DR GeneID; 6241172; -. DR Gramene; AT5G60142.1; AT5G60142.1; AT5G60142. DR KEGG; ath:AT5G60142; -. DR Araport; AT5G60142; -. DR TAIR; locus:4515103743; AT5G60142. DR InParanoid; Q9LST3; -. DR OMA; HFPEFIN; -. DR OrthoDB; EOG09360YM3; -. DR PRO; PR:Q9LST3; -. DR Proteomes; UP000006548; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 346 B3 domain-containing protein At5g60142. FT /FTId=PRO_0000375151. FT DNA_BIND 13 109 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 124 218 Asp-rich. SQ SEQUENCE 346 AA; 40190 MW; 870441C6C2556907 CRC64; MMNRGISVDD CLPKFFKVYL PDDSGDDLEL PISFNSFLPK SLPKNVIVRS IYGNIWKVAF RKFCGDSERF VMVNGWKKIV KDEDLKGGEF LEFEFDGSWC FNFCIYGRAT CKRLRSSVQI TVLDDNDDGF NDDQDYGEEV KSSENFIVLD DDDISDVQDY NEEDTSSEDI TALDDADNDD INDVQDYVEE DTSSEDIIVI DDDDDDDDQD YGDDDHADVE KERWRGVKTE KKKKGSSGEH DRQYLDNHMN PFFTVNQHRQ IKYNMLRIPT KVITKYGLHF PEFINLIDPL EKNFGKLKRK VKGQTIKGFR SIIRRNNVKL NDKVICELEK EMDGLVREIK VHVIRG // ID Y5013_ARATH Reviewed; 326 AA. AC Q9LVG1; F4JXH1; F4JXH2; Q4PSA6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 05-JUL-2017, entry version 84. DE RecName: Full=B3 domain-containing protein At5g60130; GN OrderedLocusNames=At5g60130; ORFNames=MGO3.11; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10718197; DOI=10.1093/dnares/7.1.31; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:31-63(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 27-326. RC STRAIN=cv. Columbia; RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W., RA Redman J.C., Wu H.C., Utterback T., Town C.D.; RL Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=1; CC Comment=A number of isoforms are produced. According to EST CC sequences.; CC Name=1; CC IsoId=Q9LVG1-1; Sequence=Displayed; CC -!- SEQUENCE CAUTION: CC Sequence=AED97283.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB019231; BAA96942.1; -; Genomic_DNA. DR EMBL; CP002688; AED97282.2; -; Genomic_DNA. DR EMBL; CP002688; AED97283.1; ALT_SEQ; Genomic_DNA. DR EMBL; DQ056730; AAY78874.1; -; mRNA. DR RefSeq; NP_001190577.1; NM_001203648.1. DR RefSeq; NP_001318844.1; NM_001345394.1. [Q9LVG1-1] DR RefSeq; NP_001330294.1; NM_001345395.1. DR UniGene; At.55637; -. DR ProteinModelPortal; Q9LVG1; -. DR SMR; Q9LVG1; -. DR STRING; 3702.AT5G60130.1; -. DR iPTMnet; Q9LVG1; -. DR PaxDb; Q9LVG1; -. DR EnsemblPlants; AT5G60130.1; AT5G60130.1; AT5G60130. [Q9LVG1-1] DR GeneID; 836135; -. DR Gramene; AT5G60130.1; AT5G60130.1; AT5G60130. [Q9LVG1-1] DR Araport; AT5G60130; -. DR TAIR; locus:2164180; AT5G60130. DR HOGENOM; HOG000097080; -. DR InParanoid; Q9LVG1; -. DR PhylomeDB; Q9LVG1; -. DR PRO; PR:Q9LVG1; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q9LVG1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 326 B3 domain-containing protein At5g60130. FT /FTId=PRO_0000375149. FT DNA_BIND 12 110 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 131 222 Asp-rich. SQ SEQUENCE 326 AA; 37181 MW; C7BAC844B6AA7083 CRC64; MNKGVSLDNC VPKFFKVYLP DESGDDMVLP ISFTRFLPKS LPETVTVRSI SGNIWKLELK KCCGDDDTEK FVMVNGWKRI VKDEDLKGGD FLEFEFDGSS CFHFCIYEHR TMCKKIRRSS DQSEEIKVES DSDEQNQASD DVLSLDEDDD DSDYNCGEDN DSDDYADEAA VEKDDNDADD EDVDNVADDV PVEDDDYVEA FDSRDHAKAD DDDEDERQYL DDRENPSFTL ILNPKKKSQL LIPARVIKDY DLHFPESITL VDPLVKKFGT LEKQIKIQTN GSVFVKGFGS IIRRNKVKTT DKMIFEIKKT GDNNLVQTIK IHIISG // ID FUS3_ARATH Reviewed; 313 AA. AC Q9LW31; O82411; Q700C8; Q9SAT8; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 07-JUN-2017, entry version 89. DE RecName: Full=B3 domain-containing transcription factor FUS3; DE AltName: Full=Protein FUSCA3; GN Name=FUS3; OrderedLocusNames=At3g26790; ORFNames=MDJ14.4; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], AND DEVELOPMENTAL STAGE. RC STRAIN=cv. Columbia; TISSUE=Silique; RX PubMed=9807814; DOI=10.1046/j.1365-313X.1998.00259.x; RA Luerssen H., Kirik V., Herrmann P., Misera S.; RT "FUSCA3 encodes a protein with a conserved VP1/AB13-like B3 domain RT which is of functional importance for the regulation of seed RT maturation in Arabidopsis thaliana."; RL Plant J. 15:755-764(1998). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10819329; DOI=10.1093/dnares/7.2.131; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:131-135(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=15208423; DOI=10.1104/pp.104.042176; RA Gong W., Shen Y.-P., Ma L.-G., Pan Y., Du Y.-L., Wang D.-H., RA Yang J.-Y., Hu L.-D., Liu X.-F., Dong C.-X., Ma L., Chen Y.-H., RA Yang X.-Y., Gao Y., Zhu D., Tan X., Mu J.-Y., Zhang D.-B., Liu Y.-L., RA Dinesh-Kumar S.P., Li Y., Wang X.-P., Gu H.-Y., Qu L.-J., Bai S.-N., RA Lu Y.-T., Li J.-Y., Zhao J.-D., Zuo J., Huang H., Deng X.-W., RA Zhu Y.-X.; RT "Genome-wide ORFeome cloning and analysis of Arabidopsis transcription RT factor genes."; RL Plant Physiol. 135:773-782(2004). RN [5] RP DISRUPTION PHENOTYPE. RX PubMed=12244252; DOI=10.1105/tpc.6.5.589; RA Keith K., Kraml M., Dengler N.G., McCourt P.; RT "fusca3: a heterochronic mutation affecting late embryo development in RT Arabidopsis."; RL Plant Cell 6:589-600(1994). RN [6] RP FUNCTION. RX PubMed=15363412; DOI=10.1016/j.devcel.2004.06.017; RA Gazzarrini S., Tsuchiya Y., Lumba S., Okamoto M., McCourt P.; RT "The transcription factor FUSCA3 controls developmental timing in RT Arabidopsis through the hormones gibberellin and abscisic acid."; RL Dev. Cell 7:373-385(2004). RN [7] RP FUNCTION, AND DEVELOPMENTAL STAGE. RX PubMed=14675433; DOI=10.1046/j.1365-313X.2003.01939.x; RA Tsuchiya Y., Nambara E., Naito S., McCourt P.; RT "The FUS3 transcription factor functions through the epidermal RT regulator TTG1 during embryogenesis in Arabidopsis."; RL Plant J. 37:73-81(2004). RN [8] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Transcription regulator involved in gene regulation CC during late embryogenesis. Its expression to the epidermis is CC sufficient to control foliar organ identity by regulating CC positively the synthesis abscisic acid (ABA) and negatively CC gibberellin production. Negatively regulates TTG1 in the embryo. CC Positively regulates the abundance of the ABI3 protein in the CC seed. {ECO:0000269|PubMed:14675433, ECO:0000269|PubMed:15363412}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- DEVELOPMENTAL STAGE: Expressed in developing embryo. At globular CC stage, expressed in all cells of the embryo proper. At heart CC stage, preferentially expressed in the protodermal tissue. In CC mature embryo, expressed in the provascular tissue, root cap and CC mature epidermis. Expressed in the aleurone layer in mature seed. CC {ECO:0000269|PubMed:14675433, ECO:0000269|PubMed:9807814}. CC -!- DISRUPTION PHENOTYPE: Accumulation of anthocyanins in embryo. CC Presence of trichomes on cotyledons. Unusual pattern of storage CC product accumulation in embryos and cotyledons. CC {ECO:0000269|PubMed:12244252}. CC -!- SEQUENCE CAUTION: CC Sequence=AAC35246.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=AAC35247.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAB01226.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF016264; AAC35246.1; ALT_INIT; Genomic_DNA. DR EMBL; AF016265; AAC35247.1; ALT_INIT; mRNA. DR EMBL; AB016889; BAB01226.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002686; AEE77216.1; -; Genomic_DNA. DR EMBL; AJ630497; CAG25870.1; -; mRNA. DR EMBL; AY568669; AAS79559.1; -; mRNA. DR RefSeq; NP_566799.1; NM_113591.4. DR UniGene; At.6029; -. DR UniGene; At.66989; -. DR ProteinModelPortal; Q9LW31; -. DR SMR; Q9LW31; -. DR BioGrid; 7623; 2. DR STRING; 3702.AT3G26790.1; -. DR iPTMnet; Q9LW31; -. DR PaxDb; Q9LW31; -. DR EnsemblPlants; AT3G26790.1; AT3G26790.1; AT3G26790. DR GeneID; 822293; -. DR Gramene; AT3G26790.1; AT3G26790.1; AT3G26790. DR KEGG; ath:AT3G26790; -. DR Araport; AT3G26790; -. DR TAIR; locus:2088439; AT3G26790. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR HOGENOM; HOG000112670; -. DR InParanoid; Q9LW31; -. DR OMA; IPIRMED; -. DR OrthoDB; EOG09360KLM; -. DR PhylomeDB; Q9LW31; -. DR PRO; PR:Q9LW31; -. DR Proteomes; UP000006548; Chromosome 3. DR Genevisible; Q9LW31; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IGI:TAIR. DR GO; GO:0010373; P:negative regulation of gibberellin biosynthetic process; IMP:UniProtKB. DR GO; GO:0010116; P:positive regulation of abscisic acid biosynthetic process; IMP:TAIR. DR GO; GO:0008284; P:positive regulation of cell proliferation; IDA:UniProtKB. DR GO; GO:0009733; P:response to auxin; IEP:TAIR. DR GO; GO:0010262; P:somatic embryogenesis; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 313 B3 domain-containing transcription factor FT FUS3. FT /FTId=PRO_0000375089. FT DNA_BIND 92 194 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 233 245 Poly-Asn. FT CONFLICT 10 10 K -> N (in Ref. 1; AAC35246). FT {ECO:0000305}. FT CONFLICT 75 75 P -> T (in Ref. 1; AAC35246). FT {ECO:0000305}. FT CONFLICT 217 217 E -> G (in Ref. 1; AAC35246). FT {ECO:0000305}. FT CONFLICT 239 241 Missing (in Ref. 4; CAG25870/AAS79559). FT {ECO:0000305}. FT CONFLICT 244 245 Missing (in Ref. 1; AAC35246). FT {ECO:0000305}. SQ SEQUENCE 313 AA; 35616 MW; 7FBDD73B99ED7075 CRC64; MMVDENVETK ASTLVASVDH GFGSGSGHDH HGLSASVPLL GVNWKKRRMP RQRRSSSSFN LLSFPPPMPP ISHVPTPLPA RKIDPRKLRF LFQKELKNSD VSSLRRMILP KKAAEAHLPA LECKEGIPIR MEDLDGFHVW TFKYRYWPNN NSRMYVLENT GDFVNAHGLQ LGDFIMVYQD LYSNNYVIQA RKASEEEEVD VINLEEDDVY TNLTRIENTV VNDLLLQDFN HHNNNNNNNS NSNSNKCSYY YPVIDDVTTN TESFVYDTTA LTSNDTPLDF LGGHTTTTNN YYSKFGTFDG LGSVENISLD DFY // ID REM23_ARATH Reviewed; 308 AA. AC Q9LXE1; Q9FXW7; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 07-JUN-2017, entry version 87. DE RecName: Full=B3 domain-containing protein REM23; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 23; GN Name=REM23; OrderedLocusNames=At5g09780; ORFNames=F17I14.30; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10470850; DOI=10.1093/dnares/6.3.183; RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Kotani H., RA Miyajima N., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. IX. RT Sequence features of the regions of 1,011,550 bp covered by seventeen RT P1 and TAC clones."; RL DNA Res. 6:183-195(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130714; DOI=10.1038/35048507; RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., RA Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., RA Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., RA Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., RA Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., RA Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., RA Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., RA Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., RA Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., RA Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., RA Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., RA Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., RA Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., RA Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., RA van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., RA Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., RA Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., RA Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., RA Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.; RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis RT thaliana."; RL Nature 408:823-826(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W., RA Redman J.C., Wu H.C., Utterback T., Town C.D.; RL Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BAB09536.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB020752; BAB09536.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL353994; CAB89352.1; -; Genomic_DNA. DR EMBL; CP002688; AED91445.1; -; Genomic_DNA. DR EMBL; DQ056675; AAY78821.1; -; mRNA. DR PIR; T49920; T49920. DR RefSeq; NP_196540.1; NM_121015.2. DR UniGene; At.54791; -. DR ProteinModelPortal; Q9LXE1; -. DR STRING; 3702.AT5G09780.1; -. DR iPTMnet; Q9LXE1; -. DR PaxDb; Q9LXE1; -. DR EnsemblPlants; AT5G09780.1; AT5G09780.1; AT5G09780. DR GeneID; 830838; -. DR Gramene; AT5G09780.1; AT5G09780.1; AT5G09780. DR KEGG; ath:AT5G09780; -. DR Araport; AT5G09780; -. DR TAIR; locus:2144831; AT5G09780. DR HOGENOM; HOG000131629; -. DR InParanoid; Q9LXE1; -. DR OMA; LWCKEER; -. DR OrthoDB; EOG09360YHN; -. DR PhylomeDB; Q9LXE1; -. DR PRO; PR:Q9LXE1; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q9LXE1; baseline and differential. DR Genevisible; Q9LXE1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 308 B3 domain-containing protein REM23. FT /FTId=PRO_0000375116. FT DNA_BIND 19 114 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 216 308 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 35623 MW; 72022C4597931D11 CRC64; MASNPDFLWC KEERKQESFF KVLKRSDMSS EDTRAIPYDF VINFSDNELS GDMKFRVQWG NSWKVKISKN PRFYFMEKSG WEKFVIDNAL GDHEFLTFTH KGQMSFTVKI FNKDGKEMMQ PPQSRASFAS SSRVKTEQDV KREEEVLVSS DSRSRGPTTA AETNRGGSYK RKLNFGKKKA EETQTYKRTE RTQNSKRTER VVSKERVYAG EPSSSVAGFK IFISKSYIKS LAIPKPFGNY MPKEKTRVKI HHPDGEKTWK VVFVVKERGQ IFSGGWKRLC KEYPVVFGDT CKFTLITPLE LLLVVSKP // ID NGA2_ARATH Reviewed; 299 AA. AC Q9M268; Q8GYG4; Q8LEW1; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 12-APR-2017, entry version 84. DE RecName: Full=B3 domain-containing transcription factor NGA2; DE AltName: Full=Protein NGATHA 2; GN Name=NGA2; OrderedLocusNames=At3g61970; ORFNames=F21F14.140; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130713; DOI=10.1038/35048706; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=11910074; DOI=10.1126/science.1071006; RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., RA Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., RA Shibata K., Shinagawa A., Shinozaki K.; RT "Functional annotation of a full-length Arabidopsis cDNA collection."; RL Science 296:141-145(2002). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., RA Feldmann K.A.; RT "Full-length cDNA from Arabidopsis thaliana."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [6] RP FUNCTION. RX PubMed=16603651; DOI=10.1105/tpc.105.040725; RA Alvarez J.P., Pekker I., Goldshmidt A., Blum E., Amsellem Z., RA Eshed Y.; RT "Endogenous and synthetic microRNAs stimulate simultaneous, efficient, RT and localized regulation of multiple targets in diverse species."; RL Plant Cell 18:1134-1151(2006). RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Regulates lateral organ growth. Functionally redundant CC with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAM67302.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL138642; CAB71904.1; -; Genomic_DNA. DR EMBL; CP002686; AEE80288.1; -; Genomic_DNA. DR EMBL; AK117646; BAC42301.1; -; mRNA. DR EMBL; BT025866; ABF85768.1; -; mRNA. DR EMBL; AY085197; AAM67302.1; ALT_INIT; mRNA. DR PIR; T47989; T47989. DR RefSeq; NP_191756.1; NM_116062.3. DR UniGene; At.34201; -. DR ProteinModelPortal; Q9M268; -. DR SMR; Q9M268; -. DR BioGrid; 10684; 2. DR STRING; 3702.AT3G61970.1; -. DR PaxDb; Q9M268; -. DR EnsemblPlants; AT3G61970.1; AT3G61970.1; AT3G61970. DR GeneID; 825370; -. DR Gramene; AT3G61970.1; AT3G61970.1; AT3G61970. DR KEGG; ath:AT3G61970; -. DR Araport; AT3G61970; -. DR TAIR; locus:2079537; AT3G61970. DR eggNOG; ENOG410JTTI; Eukaryota. DR eggNOG; ENOG41107IU; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q9M268; -. DR OMA; DKLYIDW; -. DR OrthoDB; EOG09360JAF; -. DR PhylomeDB; Q9M268; -. DR PRO; PR:Q9M268; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q9M268; baseline and differential. DR Genevisible; Q9M268; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009908; P:flower development; IMP:TAIR. DR GO; GO:0048366; P:leaf development; IMP:TAIR. DR GO; GO:1901371; P:regulation of leaf morphogenesis; IGI:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 299 B3 domain-containing transcription factor FT NGA2. FT /FTId=PRO_0000375092. FT DNA_BIND 23 129 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT CONFLICT 197 197 M -> I (in Ref. 5; AAM67302). FT {ECO:0000305}. FT CONFLICT 245 245 I -> M (in Ref. 5; AAM67302). FT {ECO:0000305}. FT CONFLICT 269 269 E -> K (in Ref. 3; BAC42301). FT {ECO:0000305}. FT CONFLICT 291 291 P -> S (in Ref. 5; AAM67302). FT {ECO:0000305}. SQ SEQUENCE 299 AA; 34270 MW; 2AB841F179DD174B CRC64; MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDSN KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRDSCNKDK LYIDWRRRPK IPDHHHQQFA GAMFPRFYTF PHPQMPTNYE THNLYHRFHQ RDLGIGYYVR SMERSHPTAV IESVPVMMQR RAQVASMASR GEKRLRLFGV DMECGGGGGS VNSTEEESSS SGGSIPRGRV SMVGAGSLLQ LRLVSSDDES LVAMEAASLE DHHFFTKKGK PSLSFDLDR // ID REM21_ARATH Reviewed; 330 AA. AC Q9M8K2; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 05-JUL-2017, entry version 83. DE RecName: Full=B3 domain-containing protein REM21; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 21; GN Name=REM21; OrderedLocusNames=At3g06160; ORFNames=F28L1.10; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130713; DOI=10.1038/35048706; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=1; CC Comment=A number of isoforms are produced. According to EST CC sequences.; CC Name=1; CC IsoId=Q9M8K2-1; Sequence=Displayed; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC018907; AAF30309.1; -; Genomic_DNA. DR EMBL; CP002686; AEE74354.1; -; Genomic_DNA. DR RefSeq; NP_187267.1; NM_111491.1. [Q9M8K2-1] DR UniGene; At.53200; -. DR ProteinModelPortal; Q9M8K2; -. DR SMR; Q9M8K2; -. DR EnsemblPlants; AT3G06160.1; AT3G06160.1; AT3G06160. [Q9M8K2-1] DR GeneID; 819790; -. DR Gramene; AT3G06160.1; AT3G06160.1; AT3G06160. [Q9M8K2-1] DR KEGG; ath:AT3G06160; -. DR Araport; AT3G06160; -. DR HOGENOM; HOG000097078; -. DR InParanoid; Q9M8K2; -. DR PhylomeDB; Q9M8K2; -. DR PRO; PR:Q9M8K2; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; Q9M8K2; baseline and differential. DR Genevisible; Q9M8K2; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 330 B3 domain-containing protein REM21. FT /FTId=PRO_0000375114. FT DNA_BIND 23 116 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 37423 MW; 0907AFC06AA738CF CRC64; MWATKSRRCA VHTSSMASGD VLPRFFTVFL SHCSSESMVI PRSYYNLLPR PLPKTAILIG TGGRFWKVAM TSKQEQVYFE QGWGNFVADN QLKEGEFLTF VFDGHKSYEV SIYGRGDCKE TRAVIQVEEI SDDTEDDNVS LHSPSNVSLD SLSNDSHHST SNVSLRSLSN DSLHGDAEIE SDSEYSPENL PSASISVESV EVVNPTTSRQ RSYKRKTIEN PHLYLDDPNN VCFETCLKLR KFELLVHAQL VKDYGLIFSD NVDYIDGYGK LTAKTTKWAD QRVCINKWQK ICERNQFTEN DSILCEILRN EDKVVYAIKI HIFRDAAAST // ID NGA3_ARATH Reviewed; 358 AA. AC Q9MAN1; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 07-JUN-2017, entry version 87. DE RecName: Full=B3 domain-containing transcription factor NGA3; DE AltName: Full=Protein NGATHA3; GN Name=NGA3; OrderedLocusNames=At1g01030; ORFNames=T25K16.3; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14993207; DOI=10.1101/gr.1515604; RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., RA Caboche M., Weissenbach J., Salanoubat M.; RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a RT combined approach to evaluate and improve Arabidopsis genome RT annotation."; RL Genome Res. 14:406-413(2004). RN [4] RP FUNCTION. RX PubMed=16603651; DOI=10.1105/tpc.105.040725; RA Alvarez J.P., Pekker I., Goldshmidt A., Blum E., Amsellem Z., RA Eshed Y.; RT "Endogenous and synthetic microRNAs stimulate simultaneous, efficient, RT and localized regulation of multiple targets in diverse species."; RL Plant Cell 18:1134-1151(2006). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Regulates lateral organ growth. Functionally redundant CC with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=BX814729; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007323; AAF26476.1; -; Genomic_DNA. DR EMBL; CP002684; AEE27219.1; -; Genomic_DNA. DR EMBL; BX814729; -; NOT_ANNOTATED_CDS; mRNA. DR PIR; B86141; B86141. DR RefSeq; NP_171611.1; NM_099985.3. DR UniGene; At.49492; -. DR ProteinModelPortal; Q9MAN1; -. DR STRING; 3702.AT1G01030.1; -. DR PaxDb; Q9MAN1; -. DR EnsemblPlants; AT1G01030.1; AT1G01030.1; AT1G01030. DR GeneID; 839321; -. DR Gramene; AT1G01030.1; AT1G01030.1; AT1G01030. DR KEGG; ath:AT1G01030; -. DR Araport; AT1G01030; -. DR TAIR; locus:2200950; AT1G01030. DR eggNOG; ENOG410JBK3; Eukaryota. DR eggNOG; ENOG4111BY3; LUCA. DR HOGENOM; HOG000239355; -. DR InParanoid; Q9MAN1; -. DR OMA; NMECGND; -. DR OrthoDB; EOG09360JAF; -. DR PhylomeDB; Q9MAN1; -. DR PRO; PR:Q9MAN1; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; Q9MAN1; baseline and differential. DR Genevisible; Q9MAN1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009908; P:flower development; IMP:TAIR. DR GO; GO:0048366; P:leaf development; IMP:TAIR. DR GO; GO:1901371; P:regulation of leaf morphogenesis; IGI:TAIR. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 358 B3 domain-containing transcription factor FT NGA3. FT /FTId=PRO_0000375093. FT DNA_BIND 56 162 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 271 277 Poly-Pro. FT COMPBIAS 314 319 Poly-Ser. FT COMPBIAS 328 342 Asp-rich. SQ SEQUENCE 358 AA; 40288 MW; DCF366CC2D388DAC CRC64; MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP // ID REM4_ARATH Reviewed; 512 AA. AC Q9SB79; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-2000, sequence version 1. DT 05-JUL-2017, entry version 88. DE RecName: Full=Putative B3 domain-containing protein REM4; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 4; GN Name=REM4; OrderedLocusNames=At4g31630; ORFNames=F28M20.180; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL031004; CAA19760.1; -; Genomic_DNA. DR EMBL; AL161579; CAB79881.1; -; Genomic_DNA. DR EMBL; CP002687; AEE85939.1; -; Genomic_DNA. DR PIR; T05107; T05107. DR RefSeq; NP_194891.1; NM_119312.1. DR UniGene; At.54567; -. DR ProteinModelPortal; Q9SB79; -. DR STRING; 3702.AT4G31630.1; -. DR PaxDb; Q9SB79; -. DR EnsemblPlants; AT4G31630.1; AT4G31630.1; AT4G31630. DR GeneID; 829291; -. DR Gramene; AT4G31630.1; AT4G31630.1; AT4G31630. DR KEGG; ath:AT4G31630; -. DR Araport; AT4G31630; -. DR TAIR; locus:2124864; AT4G31630. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; Q9SB79; -. DR OMA; IESENCS; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; Q9SB79; -. DR PRO; PR:Q9SB79; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q9SB79; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 512 Putative B3 domain-containing protein FT REM4. FT /FTId=PRO_0000375098. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 169 265 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 307 403 TF-B3 3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 116 145 Asp-rich. SQ SEQUENCE 512 AA; 57354 MW; 4C82DC6CBE4727EE CRC64; MADPLIPSPT NKAFFIIDLS GQKSNPIIPT EFIWNHFNGK IQSTNMKLTS DASDRNWDVK LDGARFAGGW KDFSVSHSVR DDDLLSFRHD GGMVFHVSPF GRSFSQIQLI SSSTSDDDDD ERTVFDDDED DDVGDDDDNS ISEDDFCSKK ISSKKRARKE TESSSDKSYL VAHVTPSSLL RDNMCVLSKF ARSNGLDRRE CEIDLRDEHE KSWTLLLRHN KKTGQAFMRG GWRSFCRNNG IKAGSICRFK LVQSGIKPVL QLCPNASSIP EGNSSKARKK RNVSEIEGDE IESENCSETI PLNQNKILTF DLKPYVFRSC QFFLPASFAR ENGIVEAGEV TVLNKDGIEW KSHLVNIKGR DQFYNRGCQD FFVANGVKNV GDPFTLEVIR GGPSPILKIC SKVKQAASSD GHKTADRKPR MTDQAPLAEE QTDNRVEKRA QVTEEGGPSR STRADPGNLQ QKQPCSISDH VKKVKQSIVD TLTDVRRFQS ELKVKEQNLE ASLQEIDALG MI // ID REM5_ARATH Reviewed; 352 AA. AC Q9SB80; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-2000, sequence version 1. DT 05-JUL-2017, entry version 117. DE RecName: Full=B3 domain-containing protein REM5; DE AltName: Full=Auxin response factor 22; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 5; GN Name=REM5; Synonyms=ARF22; OrderedLocusNames=At4g31640; GN ORFNames=F28M20.170; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RA Carabelli M., Ciarbelli A.R., Ruzza V., Sessa G., Steindler C., RA Ruberti I.; RT "Nucleotide sequence of the putative Arabidopsis ARF22."; RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [6] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AJ441074; CAD29642.1; -; mRNA. DR EMBL; AL031004; CAA19759.1; -; Genomic_DNA. DR EMBL; AL161579; CAB79882.1; -; Genomic_DNA. DR EMBL; CP002687; AEE85940.1; -; Genomic_DNA. DR EMBL; AY142531; AAN13074.1; -; mRNA. DR EMBL; AB493714; BAH30552.1; -; mRNA. DR PIR; T05106; T05106. DR RefSeq; NP_194892.1; NM_119313.3. DR UniGene; At.31730; -. DR ProteinModelPortal; Q9SB80; -. DR STRING; 3702.AT4G31640.1; -. DR PaxDb; Q9SB80; -. DR EnsemblPlants; AT4G31640.1; AT4G31640.1; AT4G31640. DR GeneID; 829292; -. DR Gramene; AT4G31640.1; AT4G31640.1; AT4G31640. DR KEGG; ath:AT4G31640; -. DR Araport; AT4G31640; -. DR TAIR; locus:2124879; AT4G31640. DR eggNOG; ENOG410JMYQ; Eukaryota. DR eggNOG; ENOG410Z6HB; LUCA. DR HOGENOM; HOG000154088; -. DR InParanoid; Q9SB80; -. DR OrthoDB; EOG09360BFM; -. DR PhylomeDB; Q9SB80; -. DR PRO; PR:Q9SB80; -. DR Proteomes; UP000006548; Chromosome 4. DR ExpressionAtlas; Q9SB80; baseline and differential. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat; KW Transcription; Transcription regulation. FT CHAIN 1 352 B3 domain-containing protein REM5. FT /FTId=PRO_0000375099. FT DNA_BIND 11 103 TF-B3 1. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 246 TF-B3 2. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 40075 MW; AB4122EB16640934 CRC64; MKNPTLFAPK SPHFFQPILP GFKSHIKIPV KFFSKHIEGK HEGNTVYLRS YPSRRTWKVK MEGHKLTEGW KEFVEAHDLR VGDFVVFKHK GDMLFHVTAI GPSCCEVQYA PSRSHDRNEE SDEIGESSRN EKIIEENVKT EPDQFSPDLT CFSQSVTASN LTRDLVGIPR DFAKRYGLNI GRHEIVLMDE EGNTWESEVK SYKSGRVFIA GGWTSLCTAN KLEVGDSCTF KLLRNPKIPV FRLCSRPKAG AEARPHKRSR VQSSSGGSRQ KHDVRQKLDE EGGPSRCTRS SNKATGDQEK LQQTQSCFIF DHVAKVKQSV EDTLNSIRRF RAKLETKEHN LEALLQETKT KL // ID ARFJ_ARATH Reviewed; 693 AA. AC Q9SKN5; B2CTC0; B2CTC4; B2CTD5; B2CTE0; Q0WQZ3; Q9SQ86; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-2000, sequence version 1. DT 05-JUL-2017, entry version 122. DE RecName: Full=Auxin response factor 10; GN Name=ARF10; OrderedLocusNames=At2g28350; ORFNames=T1B3.13; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], DIMERIZATION, AND TISSUE SPECIFICITY. RC STRAIN=cv. Columbia; RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 365-526, AND VARIANTS ASP-411; RP SER-473 AND ASN-475 DEL. RC STRAIN=cv. Ag-0, cv. An-1, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1, RC cv. Cvi-1, cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Kas-2, RC cv. Ll-0, cv. Mrk-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, RC cv. Oy-0, cv. Sorbo, cv. Wassilewskija, cv. Wei-0, and cv. Wt-5; RX PubMed=18305205; DOI=10.1104/pp.108.116582; RA Ehrenreich I.M., Purugganan M.D.; RT "Sequence variation of microRNAs and their binding sites in RT Arabidopsis."; RL Plant Physiol. 146:1974-1982(2008). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 448-693. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [7] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [8] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF04627.1; Type=Frameshift; Positions=275, 282, 286, 683, 688; Evidence={ECO:0000305}; CC Sequence=BAF00456.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF099735; AAF04627.1; ALT_FRAME; mRNA. DR EMBL; AC006283; AAD20695.1; -; Genomic_DNA. DR EMBL; CP002685; AEC08110.1; -; Genomic_DNA. DR EMBL; AF325073; AAK17141.1; -; mRNA. DR EMBL; AF336919; AAG54000.1; -; mRNA. DR EMBL; EU550097; ACB30883.1; -; Genomic_DNA. DR EMBL; EU550098; ACB30884.1; -; Genomic_DNA. DR EMBL; EU550099; ACB30885.1; -; Genomic_DNA. DR EMBL; EU550100; ACB30886.1; -; Genomic_DNA. DR EMBL; EU550101; ACB30887.1; -; Genomic_DNA. DR EMBL; EU550102; ACB30888.1; -; Genomic_DNA. DR EMBL; EU550103; ACB30889.1; -; Genomic_DNA. DR EMBL; EU550104; ACB30890.1; -; Genomic_DNA. DR EMBL; EU550105; ACB30891.1; -; Genomic_DNA. DR EMBL; EU550106; ACB30892.1; -; Genomic_DNA. DR EMBL; EU550107; ACB30893.1; -; Genomic_DNA. DR EMBL; EU550108; ACB30894.1; -; Genomic_DNA. DR EMBL; EU550109; ACB30895.1; -; Genomic_DNA. DR EMBL; EU550110; ACB30896.1; -; Genomic_DNA. DR EMBL; EU550111; ACB30897.1; -; Genomic_DNA. DR EMBL; EU550112; ACB30898.1; -; Genomic_DNA. DR EMBL; EU550113; ACB30899.1; -; Genomic_DNA. DR EMBL; EU550114; ACB30900.1; -; Genomic_DNA. DR EMBL; EU550115; ACB30901.1; -; Genomic_DNA. DR EMBL; EU550116; ACB30902.1; -; Genomic_DNA. DR EMBL; EU550117; ACB30903.1; -; Genomic_DNA. DR EMBL; EU550118; ACB30904.1; -; Genomic_DNA. DR EMBL; EU550119; ACB30905.1; -; Genomic_DNA. DR EMBL; AK228534; BAF00456.1; ALT_INIT; mRNA. DR PIR; G84683; G84683. DR RefSeq; NP_180402.1; NM_128394.5. DR UniGene; At.13730; -. DR ProteinModelPortal; Q9SKN5; -. DR SMR; Q9SKN5; -. DR BioGrid; 2732; 8. DR IntAct; Q9SKN5; 13. DR STRING; 3702.AT2G28350.1; -. DR PaxDb; Q9SKN5; -. DR EnsemblPlants; AT2G28350.1; AT2G28350.1; AT2G28350. DR GeneID; 817382; -. DR Gramene; AT2G28350.1; AT2G28350.1; AT2G28350. DR KEGG; ath:AT2G28350; -. DR Araport; AT2G28350; -. DR TAIR; locus:2057517; AT2G28350. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR InParanoid; Q9SKN5; -. DR OMA; HQLDHGM; -. DR OrthoDB; EOG093603PN; -. DR PhylomeDB; Q9SKN5; -. DR PRO; PR:Q9SKN5; -. DR Proteomes; UP000006548; Chromosome 2. DR ExpressionAtlas; Q9SKN5; baseline and differential. DR Genevisible; Q9SKN5; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0035198; F:miRNA binding; ISS:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IMP:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IMP:TAIR. DR GO; GO:0051301; P:cell division; IGI:TAIR. DR GO; GO:0048589; P:developmental growth; IMP:TAIR. DR GO; GO:0010154; P:fruit development; IMP:TAIR. DR GO; GO:0048366; P:leaf development; IMP:TAIR. DR GO; GO:0007389; P:pattern specification process; IDA:TAIR. DR GO; GO:0048441; P:petal development; IMP:TAIR. DR GO; GO:0031540; P:regulation of anthocyanin biosynthetic process; IMP:TAIR. DR GO; GO:0009743; P:response to carbohydrate; IMP:TAIR. DR GO; GO:0048829; P:root cap development; IMP:TAIR. DR GO; GO:0048442; P:sepal development; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 693 Auxin response factor 10. FT /FTId=PRO_0000111514. FT DOMAIN 580 668 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 115 217 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VARIANT 411 411 H -> D (in strain: cv. Ag-0, cv. Bay-0, FT cv. Br-0, cv. C24, cv. Ct-1, cv. CVi-0, FT cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, FT cv. Kas-2, cv. Ll-0, cv. Mrk-0, cv. Ms-0, FT cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, FT cv. Sorbo, cv. Wassilewskija, cv. Wei-0 FT and cv. Wt-5). FT {ECO:0000269|PubMed:18305205}. FT VARIANT 473 473 G -> S (in strain: cv. Nd-1). FT {ECO:0000269|PubMed:18305205}. FT VARIANT 475 475 Missing (in strain: cv. Bay-0, cv. Ga-0, FT cv. Ms-0 and cv. Oy-0). FT {ECO:0000269|PubMed:18305205}. FT CONFLICT 156 156 I -> N (in Ref. 1; AAF04627). FT {ECO:0000305}. FT CONFLICT 397 397 R -> W (in Ref. 1; AAF04627). FT {ECO:0000305}. FT CONFLICT 585 585 V -> I (in Ref. 6; BAF00456). FT {ECO:0000305}. FT CONFLICT 604 604 Y -> V (in Ref. 1; AAF04627). FT {ECO:0000305}. FT CONFLICT 620 620 R -> G (in Ref. 6; BAF00456). FT {ECO:0000305}. FT CONFLICT 621 621 S -> P (in Ref. 1; AAF04627). FT {ECO:0000305}. FT CONFLICT 624 624 L -> V (in Ref. 1; AAF04627). FT {ECO:0000305}. FT CONFLICT 628 628 V -> G (in Ref. 1; AAF04627). FT {ECO:0000305}. SQ SEQUENCE 693 AA; 76721 MW; 6D3002534DC6F9E7 CRC64; MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA // ID REM22_ARATH Reviewed; 276 AA. AC Q9STF1; A8MSE6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-2000, sequence version 1. DT 05-JUL-2017, entry version 85. DE RecName: Full=B3 domain-containing protein REM22; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 22; GN Name=REM22; OrderedLocusNames=At3g46770; ORFNames=T6H20.200; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130713; DOI=10.1038/35048706; RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., RA Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., RA Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., RA Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., RA Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., RA Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., RA Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., RA Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., RA Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., RA Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., RA Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., RA Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., RA Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., RA Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., RA Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., RA Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., RA Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., RA Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., RA Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., RA Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., RA Watanabe A., Yamada M., Yasuda M., Tabata S.; RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis RT thaliana."; RL Nature 408:820-822(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9STF1-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9STF1-2; Sequence=VSP_037328; CC Note=Derived from EST data. No experimental confirmation CC available.; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL096859; CAB51188.1; -; Genomic_DNA. DR EMBL; CP002686; AEE78202.1; -; Genomic_DNA. DR EMBL; CP002686; AEE78203.1; -; Genomic_DNA. DR PIR; T12971; T12971. DR RefSeq; NP_001078253.1; NM_001084784.2. [Q9STF1-2] DR RefSeq; NP_190261.1; NM_114544.3. [Q9STF1-1] DR UniGene; At.53802; -. DR ProteinModelPortal; Q9STF1; -. DR SMR; Q9STF1; -. DR STRING; 3702.AT3G46770.1; -. DR PaxDb; Q9STF1; -. DR PRIDE; Q9STF1; -. DR EnsemblPlants; AT3G46770.1; AT3G46770.1; AT3G46770. [Q9STF1-1] DR GeneID; 823830; -. DR Gramene; AT3G46770.1; AT3G46770.1; AT3G46770. [Q9STF1-1] DR KEGG; ath:AT3G46770; -. DR Araport; AT3G46770; -. DR TAIR; locus:2102812; AT3G46770. DR HOGENOM; HOG000097080; -. DR InParanoid; Q9STF1; -. DR OMA; MEMKANG; -. DR OrthoDB; EOG093615H8; -. DR PhylomeDB; Q9STF1; -. DR PRO; PR:Q9STF1; -. DR Proteomes; UP000006548; Chromosome 3. DR Genevisible; Q9STF1; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Alternative splicing; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 276 B3 domain-containing protein REM22. FT /FTId=PRO_0000375115. FT DNA_BIND 11 115 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 1 66 Missing (in isoform 2). {ECO:0000305}. FT /FTId=VSP_037328. SQ SEQUENCE 276 AA; 31951 MW; DF7C5A5F77C3D2B4 CRC64; MEENSSKKKL SETMSIQDTV LKFFRVYIPN QTADDMNLPL VSDKISGKPL PRKVTVKSVS SGNIWRMEMK ANGNTVFLRD GWKKIVKDEN VTEPIFLEFE FDGYGVFHFC VYEYGSMCKR MRSPMEKEVI KVDSEEDVLV GNEESTKGLE ESPRRGGTSR RRAKLKTKSH KIYEHLDNKL NPSFPVDMTQ NRTRIPSLLI KDYNLTFPNM VIMRDKIGIL KRRIVIWKNR SVYLNGIGSI IRRNHVKPGN EVVFELKMVN GYHGLVHEIK VHIIKA // ID Y3440_ARATH Reviewed; 397 AA. AC Q9SZ05; C0SVL4; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 07-JUN-2017, entry version 94. DE RecName: Full=B3 domain-containing protein At4g34400; GN OrderedLocusNames=At4g34400; ORFNames=F10M10.170; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=CAB36717.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC Sequence=CAB80157.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AL035521; CAB36717.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL161585; CAB80157.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002687; AEE86368.1; -; Genomic_DNA. DR EMBL; CP002687; ANM67235.1; -; Genomic_DNA. DR EMBL; AB493717; BAH30555.1; -; mRNA. DR PIR; T04786; T04786. DR RefSeq; NP_001320135.1; NM_001342283.1. DR RefSeq; NP_195166.2; NM_119605.3. DR UniGene; At.54601; -. DR ProteinModelPortal; Q9SZ05; -. DR SMR; Q9SZ05; -. DR BioGrid; 14872; 2. DR IntAct; Q9SZ05; 2. DR STRING; 3702.AT4G34400.1; -. DR iPTMnet; Q9SZ05; -. DR PaxDb; Q9SZ05; -. DR PRIDE; Q9SZ05; -. DR EnsemblPlants; AT4G34400.1; AT4G34400.1; AT4G34400. DR EnsemblPlants; AT4G34400.2; AT4G34400.2; AT4G34400. DR GeneID; 829590; -. DR Gramene; AT4G34400.1; AT4G34400.1; AT4G34400. DR Gramene; AT4G34400.2; AT4G34400.2; AT4G34400. DR KEGG; ath:AT4G34400; -. DR Araport; AT4G34400; -. DR TAIR; locus:2116219; AT4G34400. DR eggNOG; ENOG410JVD4; Eukaryota. DR eggNOG; ENOG411060T; LUCA. DR HOGENOM; HOG000097078; -. DR InParanoid; Q9SZ05; -. DR OMA; ANTIFRS; -. DR OrthoDB; EOG09360YM3; -. DR PhylomeDB; Q9SZ05; -. DR PRO; PR:Q9SZ05; -. DR Proteomes; UP000006548; Chromosome 4. DR ExpressionAtlas; Q9SZ05; baseline and differential. DR Genevisible; Q9SZ05; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 397 B3 domain-containing protein At4g34400. FT /FTId=PRO_0000375138. FT DNA_BIND 14 107 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 112 244 Glu-rich. SQ SEQUENCE 397 AA; 45678 MW; 0DAE5AD3453F35DB CRC64; MASSMASNDF QLPPRFFTVF VSHFSSEFMV IPVSYYDHIP HRFPKTVILR GPGGCSWKVA TEIKDDEVLF SQGWPKFVRD NTLNDGDFLT FAYNGAHIFE VSIFRGYDAC KEISEVTELE EEEEDSVISL SSEDTDTGAK SEMKNTVPEG RDKGKSKVEV VEDSDDDEEE DSVYSESSEE TETDTDSEFK VAKPTIPKSQ KKGKKKEQVV ESSDDEEDEE EDSDSDYIET FGQLDIEENS ISEEDSSYAP DKEDTATASF VKPKVANKVA NLKRKEAAKK RKKVDPMIKN PERYLDDPKN IHFETNVKNR LYELLVHAQL VKDYCLRFGD YVNYIDRFGK LSAKTAKWKD QRVCIKRWMR ICKRNKLKKE DRILCELLRK GTFVYAIKLH VIRGKDL // ID ARFI_ARATH Reviewed; 638 AA. AC Q9XED8; O22991; Q0WRN8; Q2V3F5; Q56X14; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1999, sequence version 1. DT 05-JUL-2017, entry version 119. DE RecName: Full=Auxin response factor 9; GN Name=ARF9; OrderedLocusNames=At4g23980; ORFNames=T19F6.20, T32A16.150; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=10318972; DOI=10.1073/pnas.96.10.5844; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Activation and repression of transcription by auxin-response RT factors."; RL Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 326-638 (ISOFORM 1). RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [6] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [7] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [8] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- INTERACTION: CC Q9ZTX8:ARF6; NbExp=3; IntAct=EBI-3946762, EBI-3946770; CC O24409:IAA19; NbExp=2; IntAct=EBI-3946762, EBI-632257; CC Q9XFM0:IAA28; NbExp=3; IntAct=EBI-3946762, EBI-3133404; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9XED8-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9XED8-2; Sequence=VSP_037314; CC Note=Derived from EST data. May be due to a competing acceptor CC splice site. No experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAB63625.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF082176; AAD24427.1; -; mRNA. DR EMBL; AC002343; AAB63625.1; ALT_SEQ; Genomic_DNA. DR EMBL; AL078468; CAB43898.1; -; Genomic_DNA. DR EMBL; AL161560; CAB81316.1; -; Genomic_DNA. DR EMBL; CP002687; AEE84835.1; -; Genomic_DNA. DR EMBL; CP002687; AEE84836.1; -; Genomic_DNA. DR EMBL; AF344312; AAK06863.1; -; mRNA. DR EMBL; AK221865; BAD94156.1; -; mRNA. DR EMBL; AK228263; BAF00211.1; -; mRNA. DR PIR; T08917; T08917. DR RefSeq; NP_001031706.1; NM_001036629.2. [Q9XED8-2] DR RefSeq; NP_194129.1; NM_118530.5. [Q9XED8-1] DR UniGene; At.3396; -. DR ProteinModelPortal; Q9XED8; -. DR SMR; Q9XED8; -. DR BioGrid; 13787; 30. DR IntAct; Q9XED8; 28. DR STRING; 3702.AT4G23980.1; -. DR iPTMnet; Q9XED8; -. DR PaxDb; Q9XED8; -. DR PRIDE; Q9XED8; -. DR EnsemblPlants; AT4G23980.1; AT4G23980.1; AT4G23980. [Q9XED8-1] DR GeneID; 828498; -. DR Gramene; AT4G23980.1; AT4G23980.1; AT4G23980. [Q9XED8-1] DR KEGG; ath:AT4G23980; -. DR Araport; AT4G23980; -. DR TAIR; locus:2138096; AT4G23980. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q9XED8; -. DR OMA; CHRDANE; -. DR OrthoDB; EOG09360207; -. DR PhylomeDB; Q9XED8; -. DR PRO; PR:Q9XED8; -. DR Proteomes; UP000006548; Chromosome 4. DR ExpressionAtlas; Q9XED8; baseline and differential. DR Genevisible; Q9XED8; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 638 Auxin response factor 9. FT /FTId=PRO_0000111513. FT DOMAIN 523 623 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 116 218 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 371 372 Missing (in isoform 2). {ECO:0000305}. FT /FTId=VSP_037314. SQ SEQUENCE 638 AA; 72278 MW; 6EBA72A9F8909C82 CRC64; MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN // ID Y1475_ARATH Reviewed; 190 AA. AC Q9XIB4; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 05-JUL-2017, entry version 79. DE RecName: Full=B3 domain-containing protein At1g49475; GN OrderedLocusNames=At1g49475; ORFNames=F13F21.9; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 5-190. RC STRAIN=cv. Columbia; RX PubMed=14993207; DOI=10.1101/gr.1515604; RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., RA Caboche M., Weissenbach J., Salanoubat M.; RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a RT combined approach to evaluate and improve Arabidopsis genome RT annotation."; RL Genome Res. 14:406-413(2004). RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD43154.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007504; AAD43154.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE32433.1; -; Genomic_DNA. DR EMBL; BX817688; -; NOT_ANNOTATED_CDS; mRNA. DR PIR; D96531; D96531. DR RefSeq; NP_683415.2; NM_148574.4. DR UniGene; At.49960; -. DR ProteinModelPortal; Q9XIB4; -. DR STRING; 3702.AT1G49475.1; -. DR PaxDb; Q9XIB4; -. DR EnsemblPlants; AT1G49475.1; AT1G49475.1; AT1G49475. DR GeneID; 841371; -. DR Gramene; AT1G49475.1; AT1G49475.1; AT1G49475. DR KEGG; ath:AT1G49475; -. DR Araport; AT1G49475; -. DR TAIR; locus:504956318; AT1G49475. DR eggNOG; ENOG410JS3Y; Eukaryota. DR eggNOG; ENOG4111AEI; LUCA. DR HOGENOM; HOG000155078; -. DR InParanoid; Q9XIB4; -. DR OMA; PRVNIKS; -. DR OrthoDB; EOG09360SPH; -. DR PhylomeDB; Q9XIB4; -. DR PRO; PR:Q9XIB4; -. DR Proteomes; UP000006548; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 190 B3 domain-containing protein At1g49475. FT /FTId=PRO_0000375124. FT DNA_BIND 33 125 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 171 176 Poly-Lys. SQ SEQUENCE 190 AA; 21997 MW; A097B31276EA532E CRC64; MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD // ID REM19_ARATH Reviewed; 226 AA. AC Q9XIB5; Q94B43; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1999, sequence version 1. DT 12-APR-2017, entry version 89. DE RecName: Full=B3 domain-containing protein REM19; DE AltName: Full=Protein RELATED TO VERNALIZATION 1; DE AltName: Full=Protein REPRODUCTIVE MERISTEM 19; GN Name=REM19; Synonyms=RTV1; OrderedLocusNames=At1g49480; GN ORFNames=F13F21.8; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [6] RP INTERACTION WITH ITN1. RX PubMed=22664102; DOI=10.1016/j.bbrc.2012.05.136; RA Sakamoto H., Sakata K., Kusumi K., Kojima M., Sakakibara H., Iba K.; RT "Interaction between a plasma membrane-localized ankyrin-repeat RT protein ITN1 and a nuclear protein RTV1."; RL Biochem. Biophys. Res. Commun. 423:392-397(2012). RN [7] RP INTERACTION WITH XLG2, INDUCTION BY COLD, DNA-BINDING, FUNCTION, RP SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY. RX PubMed=22232549; DOI=10.1074/jbc.M111.317412; RA Heo J.B., Sung S., Assmann S.M.; RT "Ca2+-dependent GTPase, extra-large G protein 2 (XLG2), promotes RT activation of DNA-binding protein related to vernalization 1 (RTV1), RT leading to activation of floral integrator genes and early flowering RT in Arabidopsis."; RL J. Biol. Chem. 287:8242-8253(2012). CC -!- FUNCTION: Involved in the regulation of vernalization (By CC similarity). Binds to DNA in vitro in a non-sequence-specific CC manner. XLG2 promotes the DNA binding activity of RTV1 CC specifically to promoter regions of FT and SOC1 in vivo and thus CC leads to the activation of floral integrator genes. {ECO:0000250, CC ECO:0000269|PubMed:22232549}. CC -!- SUBUNIT: Interacts with XLG2 (PubMed:22232549). Interacts with CC ITN1 (PubMed:22664102). {ECO:0000269|PubMed:22232549, CC ECO:0000269|PubMed:22664102}. CC -!- INTERACTION: CC C6KIE6:XLG2; NbExp=4; IntAct=EBI-6869217, EBI-6868693; CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326, ECO:0000269|PubMed:22232549}. CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:22232549}. CC -!- INDUCTION: By cold. {ECO:0000269|PubMed:22232549}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC007504; AAD43153.1; -; Genomic_DNA. DR EMBL; CP002684; AEE32434.1; -; Genomic_DNA. DR EMBL; CP002684; ANM59711.1; -; Genomic_DNA. DR EMBL; CP002684; ANM59712.1; -; Genomic_DNA. DR EMBL; AY042868; AAK68808.1; -; mRNA. DR EMBL; BT015682; AAU15181.1; -; mRNA. DR PIR; E96531; E96531. DR RefSeq; NP_001322051.1; NM_001333385.1. DR RefSeq; NP_001322052.1; NM_001333384.1. DR RefSeq; NP_564547.1; NM_103836.4. DR UniGene; At.24480; -. DR UniGene; At.70635; -. DR ProteinModelPortal; Q9XIB5; -. DR SMR; Q9XIB5; -. DR BioGrid; 26597; 2. DR IntAct; Q9XIB5; 1. DR STRING; 3702.AT1G49480.1; -. DR iPTMnet; Q9XIB5; -. DR PaxDb; Q9XIB5; -. DR EnsemblPlants; AT1G49480.1; AT1G49480.1; AT1G49480. DR EnsemblPlants; AT1G49480.2; AT1G49480.2; AT1G49480. DR EnsemblPlants; AT1G49480.3; AT1G49480.3; AT1G49480. DR GeneID; 841372; -. DR Gramene; AT1G49480.1; AT1G49480.1; AT1G49480. DR Gramene; AT1G49480.2; AT1G49480.2; AT1G49480. DR Gramene; AT1G49480.3; AT1G49480.3; AT1G49480. DR KEGG; ath:AT1G49480; -. DR Araport; AT1G49480; -. DR TAIR; locus:2010262; AT1G49480. DR eggNOG; ENOG410JV1A; Eukaryota. DR eggNOG; ENOG41106BT; LUCA. DR HOGENOM; HOG000005864; -. DR InParanoid; Q9XIB5; -. DR OMA; FKESKAE; -. DR OrthoDB; EOG09360FU4; -. DR PhylomeDB; Q9XIB5; -. DR PRO; PR:Q9XIB5; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9XIB5; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0005886; C:plasma membrane; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IDA:UniProtKB. DR GO; GO:0034613; P:cellular protein localization; IDA:TAIR. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0009409; P:response to cold; IEP:UniProtKB. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 226 B3 domain-containing protein REM19. FT /FTId=PRO_0000375112. FT DNA_BIND 129 223 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT MOTIF 70 73 Nuclear localization signal. FT {ECO:0000255}. FT CONFLICT 32 32 N -> I (in Ref. 3; AAK68808). FT {ECO:0000305}. FT CONFLICT 48 48 A -> D (in Ref. 3; AAK68808). FT {ECO:0000305}. SQ SEQUENCE 226 AA; 25850 MW; CB902C811E446A67 CRC64; MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG DVCVFELLRT RDFVLEVTAF RVNEYV // ID ARFL_ARATH Reviewed; 593 AA. AC Q9XID4; Q5IRX5; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-APR-2004, sequence version 2. DT 05-JUL-2017, entry version 117. DE RecName: Full=Auxin response factor 12; GN Name=ARF12; OrderedLocusNames=At1g34310; ORFNames=F23M19.4; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD39615.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY669792; AAT67076.1; -; mRNA. DR EMBL; AC007454; AAD39615.1; ALT_SEQ; Genomic_DNA. DR EMBL; CP002684; AEE31695.1; -; Genomic_DNA. DR PIR; C86467; C86467. DR RefSeq; NP_174691.2; NM_103153.2. DR UniGene; At.51185; -. DR ProteinModelPortal; Q9XID4; -. DR SMR; Q9XID4; -. DR BioGrid; 25563; 9. DR IntAct; Q9XID4; 12. DR STRING; 3702.AT1G34310.1; -. DR PaxDb; Q9XID4; -. DR EnsemblPlants; AT1G34310.1; AT1G34310.1; AT1G34310. DR GeneID; 840331; -. DR Gramene; AT1G34310.1; AT1G34310.1; AT1G34310. DR KEGG; ath:AT1G34310; -. DR Araport; AT1G34310; -. DR TAIR; locus:2026145; AT1G34310. DR HOGENOM; HOG000241141; -. DR OMA; DFSERRC; -. DR OrthoDB; EOG093612K8; -. DR PhylomeDB; Q9XID4; -. DR PRO; PR:Q9XID4; -. DR Proteomes; UP000006548; Chromosome 1. DR ExpressionAtlas; Q9XID4; baseline and differential. DR Genevisible; Q9XID4; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 593 Auxin response factor 12. FT /FTId=PRO_0000111516. FT DOMAIN 511 592 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 126 228 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 593 AA; 67218 MW; 01DCBAB5889B2ECA CRC64; MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR // ID ARFK_ARATH Reviewed; 622 AA. AC Q9ZPY6; Q0WMA6; Q0WMQ7; Q3E6N4; Q5IRX6; DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 3. DT 05-JUL-2017, entry version 118. DE RecName: Full=Auxin response factor 11; GN Name=ARF11; OrderedLocusNames=At2g46530; ORFNames=F11C10.34, F13A10.6; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617197; DOI=10.1038/45471; RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., RA Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., RA Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., RA Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., RA Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., RA Venter J.C.; RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis RT thaliana."; RL Nature 402:761-768(1999). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). RC STRAIN=cv. Columbia; RX PubMed=14993207; DOI=10.1101/gr.1515604; RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., RA Caboche M., Weissenbach J., Salanoubat M.; RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a RT combined approach to evaluate and improve Arabidopsis genome RT annotation."; RL Genome Res. 14:406-413(2004). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [6] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; CC IsoId=Q9ZPY6-1; Sequence=Displayed; CC Note=No experimental confirmation available.; CC Name=2; CC IsoId=Q9ZPY6-2; Sequence=VSP_037316, VSP_037317; CC Name=3; CC IsoId=Q9ZPY6-3; Sequence=VSP_037315, VSP_037318; CC Note=No experimental confirmation available.; CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BX837073; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AY669791; AAT67075.1; -; mRNA. DR EMBL; AC006418; AAD20164.1; -; Genomic_DNA. DR EMBL; AC006526; AAM15267.1; -; Genomic_DNA. DR EMBL; CP002685; AEC10714.1; -; Genomic_DNA. DR EMBL; CP002685; AEC10715.1; -; Genomic_DNA. DR EMBL; CP002685; AEC10716.1; -; Genomic_DNA. DR EMBL; AK229757; BAF01593.1; -; mRNA. DR EMBL; BX837073; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AK229924; BAF01750.1; -; mRNA. DR PIR; A84904; A84904. DR RefSeq; NP_001031548.1; NM_001036471.1. [Q9ZPY6-1] DR RefSeq; NP_182176.2; NM_130218.5. [Q9ZPY6-2] DR RefSeq; NP_973701.1; NM_201972.1. [Q9ZPY6-3] DR UniGene; At.36497; -. DR ProteinModelPortal; Q9ZPY6; -. DR SMR; Q9ZPY6; -. DR STRING; 3702.AT2G46530.3; -. DR iPTMnet; Q9ZPY6; -. DR PaxDb; Q9ZPY6; -. DR PRIDE; Q9ZPY6; -. DR EnsemblPlants; AT2G46530.3; AT2G46530.3; AT2G46530. [Q9ZPY6-1] DR GeneID; 819264; -. DR Gramene; AT2G46530.3; AT2G46530.3; AT2G46530. [Q9ZPY6-1] DR KEGG; ath:AT2G46530; -. DR Araport; AT2G46530; -. DR TAIR; locus:2039124; AT2G46530. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q9ZPY6; -. DR OMA; ISVNKYM; -. DR OrthoDB; EOG09360207; -. DR PhylomeDB; Q9ZPY6; -. DR PRO; PR:Q9ZPY6; -. DR Proteomes; UP000006548; Chromosome 2. DR Genevisible; Q9ZPY6; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0009506; C:plasmodesma; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Auxin signaling pathway; Complete proteome; KW DNA-binding; Nucleus; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1 622 Auxin response factor 11. FT /FTId=PRO_0000111515. FT DOMAIN 511 594 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 145 247 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT VAR_SEQ 1 108 Missing (in isoform 3). FT {ECO:0000303|PubMed:14993207}. FT /FTId=VSP_037315. FT VAR_SEQ 1 21 Missing (in isoform 2). FT {ECO:0000303|Ref.5}. FT /FTId=VSP_037316. FT VAR_SEQ 22 32 WLKLIAVGWNL -> MANVEADFRTS (in isoform FT 2). {ECO:0000303|Ref.5}. FT /FTId=VSP_037317. FT VAR_SEQ 109 125 TDEVYAQITLQPEEDQS -> MRPMRFTLRSHYNQKKI FT (in isoform 3). FT {ECO:0000303|PubMed:14993207}. FT /FTId=VSP_037318. FT CONFLICT 141 141 T -> A (in Ref. 4; BAF01593). FT {ECO:0000305}. FT CONFLICT 493 493 Q -> H (in Ref. 4; BAF01593). FT {ECO:0000305}. SQ SEQUENCE 622 AA; 69663 MW; 56DAA7CAC735F926 CRC64; MSQTSLEPLI ISIIKLQILQ LWLKLIAVGW NLGSNDDELY TELWKACAGP LVEVPRYGER VFYFPQGHME QLVASTNQGV VDQEIPVFNL PPKILCRVLS VTLKAEHETD EVYAQITLQP EEDQSEPTSL DPPLVEPAKP TVDSFVKILT ASDTSTHGGF SVLRKHATEC LPSLDMTQPT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGETGDLR VGVRRLAKQQ STMPASVISS QSMRLGVLAT ASHAVTTTTI FVVFYKPRIS QFIISVNKYM MAMKNGFSLG MRYRMRFEGE ESPERIFTGT IIGSGDLSSQ WPASKWRSLQ IQWDEPSSIQ RPNKVSPWEI EPFSPSALTP TPTQQQSKSK RSRPISEITG SPVASSFLSS FSQSHESNPS VKLLFQDPAT ERNSNKSVFS SGLQCKITEA PVTSSCRLFG FDLTSKPASA TIPHDKQLIS VDSNISDSTT KCQDPNSSNS PKEQKQQTST RSRIKVQMQG TAVGRAVDLT LLRSYDELIK ELEKMFEIEG ELSPKDKWAI VFTDDEGDRM LVGDDPWNEF CKMAKKLFIY PSDEVKKMRS KSLLGDKGTI VNLESDQRTV HV // ID Y4317_ARATH Reviewed; 250 AA. AC Q9ZR14; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 1. DT 05-JUL-2017, entry version 88. DE RecName: Full=Putative B3 domain-containing protein At4g03170; GN OrderedLocusNames=At4g03170; ORFNames=F4C21.9; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., RA Takiguchi Y., Takagi M.; RT "ORF cloning and analysis of Arabidopsis transcription factor genes."; RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases. RN [4] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AC005275; AAD14445.1; -; Genomic_DNA. DR EMBL; AL161496; CAB77802.1; -; Genomic_DNA. DR EMBL; CP002687; AEE82284.1; -; Genomic_DNA. DR EMBL; AB493674; BAH30512.1; -; Genomic_DNA. DR PIR; C85040; C85040. DR RefSeq; NP_192226.1; NM_116553.1. DR UniGene; At.54109; -. DR ProteinModelPortal; Q9ZR14; -. DR STRING; 3702.AT4G03170.1; -. DR PaxDb; Q9ZR14; -. DR EnsemblPlants; AT4G03170.1; AT4G03170.1; AT4G03170. DR GeneID; 828050; -. DR Gramene; AT4G03170.1; AT4G03170.1; AT4G03170. DR KEGG; ath:AT4G03170; -. DR Araport; AT4G03170; -. DR TAIR; locus:2125497; AT4G03170. DR eggNOG; ENOG410JFCN; Eukaryota. DR eggNOG; ENOG4111DJK; LUCA. DR HOGENOM; HOG000154970; -. DR InParanoid; Q9ZR14; -. DR OMA; EHSEIPL; -. DR OrthoDB; EOG09360NZK; -. DR PhylomeDB; Q9ZR14; -. DR PRO; PR:Q9ZR14; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q9ZR14; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 250 Putative B3 domain-containing protein FT At4g03170. FT /FTId=PRO_0000375148. FT DNA_BIND 137 245 TF-B3. FT COMPBIAS 31 54 Asp-rich. SQ SEQUENCE 250 AA; 29234 MW; 30D74B82EDE6E1AF CRC64; MANSTGKPTS STQEDEEATS ATEILAQLMQ DIIDREEDID DEDDIDDEVI DDEDYEVASL PLLQESQANQ KQSREREEET EKNQPKRFKK QNMMKINIHD FSEETLRLIE VWYEAELDPQ DIFGDNEVTR LFSRPIKKQL MSSDVDKDQC MLMLSKEQVK EKMLPFLEDS ENPVKGIDVS VYGPDGKVQQ MEFKMWNGDK TPVLTSGWKQ FVEDYGLSMT CDFVTVWMFR HIKTRKLCFA IHYVKFSLRD // ID Y4158_ARATH Reviewed; 190 AA. AC Q9ZSH7; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 1. DT 05-JUL-2017, entry version 104. DE RecName: Full=B3 domain-containing protein At4g01580; GN OrderedLocusNames=At4g01580; ORFNames=T15B16.18; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10617198; DOI=10.1038/47134; RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., RA Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., RA Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., RA Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M., RA Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., RA Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., RA Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., RA Langham S.-A., McCullagh B., Bilham L., Robben J., RA van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., RA Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., RA Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., RA Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., RA Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., RA De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., RA van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., RA Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., RA Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., RA Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., RA Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., RA Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., RA Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., RA Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., RA Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., RA Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., RA Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., RA Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., RA Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., RA Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., RA Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., RA Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., RA Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., RA Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., RA Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., RA Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., RA Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., RA Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., RA Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., RA Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., RA Chen E., Marra M.A., Martienssen R., McCombie W.R.; RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis RT thaliana."; RL Nature 402:769-777(1999). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Carninci P., Hayashizaki Y., RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., RA Seki M., Shinozaki K., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE- CC ProRule:PRU00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF104919; AAC72857.1; -; Genomic_DNA. DR EMBL; AL161492; CAB77728.1; -; Genomic_DNA. DR EMBL; CP002687; AEE82045.1; -; Genomic_DNA. DR EMBL; BT010604; AAQ89626.1; -; mRNA. DR EMBL; AK175333; BAD43096.1; -; mRNA. DR PIR; T02015; T02015. DR RefSeq; NP_192068.1; NM_116389.3. DR UniGene; At.34404; -. DR ProteinModelPortal; Q9ZSH7; -. DR BioGrid; 13407; 1. DR IntAct; Q9ZSH7; 1. DR STRING; 3702.AT4G01580.1; -. DR PaxDb; Q9ZSH7; -. DR PRIDE; Q9ZSH7; -. DR EnsemblPlants; AT4G01580.1; AT4G01580.1; AT4G01580. DR GeneID; 828118; -. DR Gramene; AT4G01580.1; AT4G01580.1; AT4G01580. DR KEGG; ath:AT4G01580; -. DR Araport; AT4G01580; -. DR TAIR; locus:2133362; AT4G01580. DR eggNOG; ENOG410JVBR; Eukaryota. DR eggNOG; ENOG411061X; LUCA. DR HOGENOM; HOG000155078; -. DR InParanoid; Q9ZSH7; -. DR OMA; ASACETN; -. DR OrthoDB; EOG093617ZF; -. DR PhylomeDB; Q9ZSH7; -. DR PRO; PR:Q9ZSH7; -. DR Proteomes; UP000006548; Chromosome 4. DR Genevisible; Q9ZSH7; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 2: Evidence at transcript level; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 190 B3 domain-containing protein At4g01580. FT /FTId=PRO_0000375146. FT DNA_BIND 29 122 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 190 AA; 22122 MW; D7FB2C343E4BC915 CRC64; MVITRNMKAR ATSVSHRQSQ QDPESPVKKF FKLVLPSTMK DKMMRIPPRF VKLQGSKLSE VVTLVTPAGY KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE GHFLLFEYKK NSSFRVIIFN ASACETNYPL DAVHIIDSDD DVIEITGKEF DTEHKSKKRP RDIEFDKILH DVDVMQVLKE EEEDKRVLRG // ID ARFF_ARATH Reviewed; 935 AA. AC Q9ZTX8; B2CT72; B2CT88; Q5IRX9; DT 13-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 26-MAY-2009, sequence version 2. DT 05-JUL-2017, entry version 122. DE RecName: Full=Auxin response factor 6; GN Name=ARF6; OrderedLocusNames=At1g30330; ORFNames=T4K22.6; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), AND TRANSCRIPTIONAL ACTIVATOR. RC STRAIN=cv. Columbia; RX PubMed=10318972; DOI=10.1073/pnas.96.10.5844; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Activation and repression of transcription by auxin-response RT factors."; RL Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RX PubMed=15659631; DOI=10.1105/tpc.104.028316; RA Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., RA Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., RA Quach H., Smith A., Yu G., Theologis A.; RT "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family RT members in Arabidopsis thaliana: unique and overlapping functions of RT ARF7 and ARF19."; RL Plant Cell 17:444-463(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 793-905, AND VARIANT ASN-838. RC STRAIN=cv. Ag-0, cv. An-1, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1, RC cv. Cvi-1, cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Kas-2, RC cv. Ll-0, cv. Mrk-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, RC cv. Oy-0, cv. Sorbo, cv. Wa-1, cv. Wassilewskija, cv. Wei-0, and RC cv. Wt-5; RX PubMed=18305205; DOI=10.1104/pp.108.116582; RA Ehrenreich I.M., Purugganan M.D.; RT "Sequence variation of microRNAs and their binding sites in RT Arabidopsis."; RL Plant Physiol. 146:1974-1982(2008). RN [6] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [7] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [8] RP FUNCTION, AND DEVELOPMENTAL STAGE. RX PubMed=16107481; DOI=10.1242/dev.01955; RA Nagpal P., Ellis C.M., Weber H., Ploense S.E., Barkawi L.S., RA Guilfoyle T.J., Hagen G., Alonso J.M., Cohen J.D., Farmer E.E., RA Ecker J.R., Reed J.W.; RT "Auxin response factors ARF6 and ARF8 promote jasmonic acid production RT and flower maturation."; RL Development 132:4107-4118(2005). RN [9] RP INDUCTION. RX PubMed=17021043; DOI=10.1242/dev.02602; RA Wu M.F., Tian Q., Reed J.W.; RT "Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 RT expression, and regulates both female and male reproduction."; RL Development 133:4211-4218(2006). RN [10] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Seems to CC act as transcriptional activator. Formation of heterodimers with CC Aux/IAA proteins may alter their ability to modulate early auxin CC response genes expression. Regulates both stamen and gynoecium CC maturation. Promotes jasmonic acid production. Partially redundant CC with ARF8. {ECO:0000269|PubMed:12036261, CC ECO:0000269|PubMed:16107481}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- INTERACTION: CC Q9XED8:ARF9; NbExp=3; IntAct=EBI-3946770, EBI-3946762; CC Q9XFM0:IAA28; NbExp=3; IntAct=EBI-3946770, EBI-3133404; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9ZTX8-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9ZTX8-2; Sequence=VSP_037312; CC Note=May be due to a competing acceptor splice site. No CC experimental confirmation available.; CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078}. CC -!- DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 CC of flower development. Highly expressed in petals at stages 9-10, CC decreases at stage 11 and disappears after flower stage 12. In CC anthers, expressed at stage 11 in the tapetum, disappears early in CC stage 12 when the tapetum degrades and reappears throughout the CC anther late in stage 12 to persist at least until stage 13. In CC stamen filaments, expressed at stages 12 to 13, especially near CC the apical end of the filament. Expressed throughout the gynoecium CC at early stages up to stage 12, especially strongly in ovules. CC Expression in gynoecium decreases late in stage 12, but persists CC through stage 13, especially near the apical end including the CC style. {ECO:0000269|PubMed:16107481}. CC -!- INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF013467; AAD01513.1; -; mRNA. DR EMBL; AY669788; AAT67072.1; -; mRNA. DR EMBL; AC025295; AAG51093.1; -; Genomic_DNA. DR EMBL; CP002684; AEE31206.1; -; Genomic_DNA. DR EMBL; CP002684; AEE31207.1; -; Genomic_DNA. DR EMBL; CP002684; ANM58494.1; -; Genomic_DNA. DR EMBL; EU550049; ACB30835.1; -; Genomic_DNA. DR EMBL; EU550050; ACB30836.1; -; Genomic_DNA. DR EMBL; EU550051; ACB30837.1; -; Genomic_DNA. DR EMBL; EU550052; ACB30838.1; -; Genomic_DNA. DR EMBL; EU550053; ACB30839.1; -; Genomic_DNA. DR EMBL; EU550054; ACB30840.1; -; Genomic_DNA. DR EMBL; EU550055; ACB30841.1; -; Genomic_DNA. DR EMBL; EU550056; ACB30842.1; -; Genomic_DNA. DR EMBL; EU550057; ACB30843.1; -; Genomic_DNA. DR EMBL; EU550058; ACB30844.1; -; Genomic_DNA. DR EMBL; EU550059; ACB30845.1; -; Genomic_DNA. DR EMBL; EU550060; ACB30846.1; -; Genomic_DNA. DR EMBL; EU550061; ACB30847.1; -; Genomic_DNA. DR EMBL; EU550062; ACB30848.1; -; Genomic_DNA. DR EMBL; EU550063; ACB30849.1; -; Genomic_DNA. DR EMBL; EU550064; ACB30850.1; -; Genomic_DNA. DR EMBL; EU550065; ACB30851.1; -; Genomic_DNA. DR EMBL; EU550066; ACB30852.1; -; Genomic_DNA. DR EMBL; EU550067; ACB30853.1; -; Genomic_DNA. DR EMBL; EU550068; ACB30854.1; -; Genomic_DNA. DR EMBL; EU550069; ACB30855.1; -; Genomic_DNA. DR EMBL; EU550070; ACB30856.1; -; Genomic_DNA. DR EMBL; EU550071; ACB30857.1; -; Genomic_DNA. DR EMBL; EU550072; ACB30858.1; -; Genomic_DNA. DR PIR; F86427; F86427. DR RefSeq; NP_001031115.1; NM_001036038.2. [Q9ZTX8-1] DR RefSeq; NP_001320924.1; NM_001332891.1. [Q9ZTX8-1] DR RefSeq; NP_174323.1; NM_102771.4. [Q9ZTX8-2] DR UniGene; At.21939; -. DR ProteinModelPortal; Q9ZTX8; -. DR SMR; Q9ZTX8; -. DR BioGrid; 25148; 37. DR IntAct; Q9ZTX8; 32. DR MINT; MINT-8059211; -. DR STRING; 3702.AT1G30330.2; -. DR PaxDb; Q9ZTX8; -. DR PRIDE; Q9ZTX8; -. DR EnsemblPlants; AT1G30330.2; AT1G30330.2; AT1G30330. [Q9ZTX8-1] DR EnsemblPlants; AT1G30330.3; AT1G30330.3; AT1G30330. [Q9ZTX8-1] DR GeneID; 839913; -. DR Gramene; AT1G30330.2; AT1G30330.2; AT1G30330. [Q9ZTX8-1] DR Gramene; AT1G30330.3; AT1G30330.3; AT1G30330. [Q9ZTX8-1] DR KEGG; ath:AT1G30330; -. DR Araport; AT1G30330; -. DR TAIR; locus:2204237; AT1G30330. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q9ZTX8; -. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR PhylomeDB; Q9ZTX8; -. DR PRO; PR:Q9ZTX8; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9ZTX8; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IGI:TAIR. DR GO; GO:0009733; P:response to auxin; IMP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Activator; Alternative splicing; Auxin signaling pathway; KW Complete proteome; DNA-binding; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 935 Auxin response factor 6. FT /FTId=PRO_0000111510. FT DOMAIN 796 880 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 129 231 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 464 565 Gln-rich. FT VAR_SEQ 15 16 Missing (in isoform 2). FT {ECO:0000303|PubMed:10318972}. FT /FTId=VSP_037312. FT VARIANT 838 838 D -> N (in strain: cv. Nd-1). FT {ECO:0000269|PubMed:18305205}. SQ SEQUENCE 935 AA; 103257 MW; 8A7A1621A0E934E3 CRC64; MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY // ID ARFD_ARATH Reviewed; 788 AA. AC Q9ZTX9; DT 13-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 1. DT 05-JUL-2017, entry version 116. DE RecName: Full=Auxin response factor 4; GN Name=ARF4; OrderedLocusNames=At5g60450; ORFNames=MUF9.8; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC STRAIN=cv. Columbia; RX PubMed=10318972; DOI=10.1073/pnas.96.10.5844; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Activation and repression of transcription by auxin-response RT factors."; RL Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=9679202; DOI=10.1093/dnares/5.2.131; RA Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence RT features of the regions of 1,381,565 bp covered by twenty one RT physically assigned P1 and TAC clones."; RL DNA Res. 5:131-145(1998). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP DIMERIZATION, AND TISSUE SPECIFICITY. RX PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x; RA Ulmasov T., Hagen G., Guilfoyle T.J.; RT "Dimerization and DNA binding of auxin response factors."; RL Plant J. 19:309-319(1999). RN [6] RP GENE FAMILY, NOMENCLATURE, AND FUNCTION. RX PubMed=12036261; DOI=10.1023/A:1015207114117; RA Hagen G., Guilfoyle T.J.; RT "Auxin-responsive gene expression: genes, promoters and regulatory RT factors."; RL Plant Mol. Biol. 49:373-385(2002). RN [7] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). Could CC act as transcriptional activator or repressor. Formation of CC heterodimers with Aux/IAA proteins may alter their ability to CC modulate early auxin response genes expression. CC {ECO:0000269|PubMed:12036261}. CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}. CC -!- INTERACTION: CC O24409:IAA19; NbExp=2; IntAct=EBI-3946495, EBI-632257; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- TISSUE SPECIFICITY: Expressed in the whole plant. CC {ECO:0000269|PubMed:10476078}. CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and CC Aux/IAA proteins occur through their C-terminal dimerization CC domains III and IV. CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AF013466; AAD01512.1; -; mRNA. DR EMBL; AB011483; BAB08228.1; -; Genomic_DNA. DR EMBL; CP002688; AED97332.1; -; Genomic_DNA. DR EMBL; AF344313; AAK06864.1; -; mRNA. DR EMBL; AY080832; AAL87308.1; -; mRNA. DR EMBL; AY113977; AAM45025.1; -; mRNA. DR RefSeq; NP_200853.1; NM_125438.4. DR UniGene; At.6797; -. DR ProteinModelPortal; Q9ZTX9; -. DR SMR; Q9ZTX9; -. DR BioGrid; 21410; 35. DR IntAct; Q9ZTX9; 16. DR STRING; 3702.AT5G60450.1; -. DR PaxDb; Q9ZTX9; -. DR PRIDE; Q9ZTX9; -. DR EnsemblPlants; AT5G60450.1; AT5G60450.1; AT5G60450. DR GeneID; 836166; -. DR Gramene; AT5G60450.1; AT5G60450.1; AT5G60450. DR KEGG; ath:AT5G60450; -. DR Araport; AT5G60450; -. DR TAIR; locus:2175098; AT5G60450. DR eggNOG; ENOG410IKM1; Eukaryota. DR eggNOG; ENOG4111D9H; LUCA. DR HOGENOM; HOG000241141; -. DR InParanoid; Q9ZTX9; -. DR OMA; QSHANPV; -. DR OrthoDB; EOG093602BR; -. DR PhylomeDB; Q9ZTX9; -. DR PRO; PR:Q9ZTX9; -. DR Proteomes; UP000006548; Chromosome 5. DR Genevisible; Q9ZTX9; AT. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0010158; P:abaxial cell fate specification; IGI:TAIR. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0010050; P:vegetative phase change; IGI:TAIR. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 1: Evidence at protein level; KW Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus; KW Reference proteome; Transcription; Transcription regulation. FT CHAIN 1 788 Auxin response factor 4. FT /FTId=PRO_0000111508. FT DOMAIN 665 747 PB1. {ECO:0000255|PROSITE- FT ProRule:PRU01081}. FT DNA_BIND 177 279 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT COMPBIAS 38 64 Ser-rich. SQ SEQUENCE 788 AA; 87284 MW; BF9D5056D1DD7A6F CRC64; MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGRLGISPS SSSSCSSGSS SSSSSTGSAS SIYSELWHAC AGPLTCLPKK GNVVVYFPQG HLEQDAMVSY SSPLEIPKFD LNPQIVCRVV NVQLLANKDT DEVYTQVTLL PLQEFSMLNG EGKEVKELGG EEERNGSSSV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFAPLDYKQ QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRDEGGE LRLGIRRAAR PRNGLPDSII EKNSCSNILS LVANAVSTKS MFHVFYSPRA THAEFVIPYE KYITSIRSPV CIGTRFRMRF EMDDSPERRC AGVVTGVCDL DPYRWPNSKW RCLLVRWDES FVSDHQERVS PWEIDPSVSL PHLSIQSSPR PKRPWAGLLD TTPPGNPITK RGGFLDFEES VRPSKVLQGQ ENIGSASPSQ GFDVMNRRIL DFAMQSHANP VLVSSRVKDR FGEFVDATGV NPACSGVMDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAAAP NPFAYQANKS SYYPLALHGI RSTHVPYQNP YNAGNQSSGP PSRAINFGEE TRKFDAQNEG GLPNNVTADL PFKIDMMGKQ KGSELNMNAS SGCKLFGFSL PVETPASKPQ SSSKRICTKV HKQGSQVGRA IDLSRLNGYD DLLMELERLF NMEGLLRDPE KGWRILYTDS ENDMMVVGDD PWHDFCNVVW KIHLYTKEEV ENANDDNKSC LEQAALMMEA SKSSSVSQPD SSPTITRV // ID RAV1_ARATH Reviewed; 344 AA. AC Q9ZWM9; DT 15-NOV-2002, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 1. DT 07-JUN-2017, entry version 136. DE RecName: Full=AP2/ERF and B3 domain-containing transcription factor RAV1; DE AltName: Full=Ethylene-responsive transcription factor RAV1; DE AltName: Full=Protein RELATED TO ABI3/VP1 1; GN Name=RAV1; OrderedLocusNames=At1g13260; ORFNames=T6J4.2; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY. RC STRAIN=cv. Columbia; TISSUE=Seedling; RX PubMed=9862967; DOI=10.1093/nar/27.2.470; RA Kagaya Y., Ohmiya K., Hattori T.; RT "RAV1, a novel DNA-binding protein, binds to bipartite recognition RT sequence through two distinct DNA-binding domains uniquely found in RT higher plants."; RL Nucleic Acids Res. 27:470-478(1999). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=11130712; DOI=10.1038/35048500; RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.; RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis RT thaliana."; RL Nature 408:816-820(2000). RN [3] {ECO:0000312|EMBL:AAL36211.1} RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RG The Arabidopsis Information Portal (Araport); RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP GENE FAMILY. RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006; RA Swaminathan K., Peterson K., Jack T.; RT "The plant B3 superfamily."; RL Trends Plant Sci. 13:647-655(2008). RN [6] RP STRUCTURE BY NMR OF 182-298. RX PubMed=15548737; DOI=10.1105/tpc.104.026112; RA Yamasaki K., Kigawa T., Inoue M., Tateno M., Yamasaki T., Yabuki T., RA Aoki M., Seki E., Matsuda T., Tomo Y., Hayami N., Terada T., RA Shirouzu M., Osanai T., Tanaka A., Seki M., Shinozaki K., Yokoyama S.; RT "Solution structure of the B3 DNA binding domain of the Arabidopsis RT cold-responsive transcription factor RAV1."; RL Plant Cell 16:3448-3459(2004). RN [7] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=16407444; DOI=10.1104/pp.105.073783; RA Nakano T., Suzuki K., Fujimura T., Shinshi H.; RT "Genome-wide analysis of the ERF gene family in Arabidopsis and RT rice."; RL Plant Physiol. 140:411-432(2006). RN [8] RP FUNCTION, AND INDUCTION. RX PubMed=15040885; DOI=10.1038/sj.cr.7290197; RA Hu Y.X., Wang Y.H., Liu X.F., Li J.Y.; RT "Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as RT a negative regulator during plant development."; RL Cell Res. 14:8-15(2004). CC -!- FUNCTION: Binds specifically to bipartite recognition sequences CC composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. CC May function as negative regulator of plant growth and CC development. {ECO:0000269|PubMed:15040885, CC ECO:0000269|PubMed:9862967}. CC -!- SUBUNIT: Monomer. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- TISSUE SPECIFICITY: Expressed in all tissues examined: Roots, CC rosette leaves, cauline leaves, inflorescence stems, flowers and CC siliques. Highest expression in roots and rosette leaves. Very low CC expression in flowers. {ECO:0000269|PubMed:9862967}. CC -!- INDUCTION: Down-regulated by brassinosteroid and zeatin. CC {ECO:0000269|PubMed:15040885}. CC -!- DOMAIN: Contains two distinct DNA-binding domains. One is located CC in the N-terminal region and binds to the 5'-CAACA-3' motif. The CC second is located in the C-terminal region and binds to the 5'- CC CACCTG-3' motif. CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. CC RAV subfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AB013886; BAA34250.1; -; mRNA. DR EMBL; AC011810; AAG09554.1; -; Genomic_DNA. DR EMBL; CP002684; AEE28991.1; -; Genomic_DNA. DR EMBL; AY063855; AAL36211.1; -; mRNA. DR EMBL; AY091291; AAM14230.1; -; mRNA. DR PIR; T51329; T51329. DR RefSeq; NP_172784.1; NM_101197.4. DR UniGene; At.20558; -. DR PDB; 1WID; NMR; -; A=182-298. DR PDBsum; 1WID; -. DR ProteinModelPortal; Q9ZWM9; -. DR SMR; Q9ZWM9; -. DR BioGrid; 23126; 8. DR STRING; 3702.AT1G13260.1; -. DR iPTMnet; Q9ZWM9; -. DR PaxDb; Q9ZWM9; -. DR EnsemblPlants; AT1G13260.1; AT1G13260.1; AT1G13260. DR GeneID; 837886; -. DR Gramene; AT1G13260.1; AT1G13260.1; AT1G13260. DR KEGG; ath:AT1G13260; -. DR Araport; AT1G13260; -. DR TAIR; locus:2205319; AT1G13260. DR eggNOG; ENOG410IIT9; Eukaryota. DR eggNOG; ENOG4110AU5; LUCA. DR HOGENOM; HOG000237484; -. DR KO; K09287; -. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR PhylomeDB; Q9ZWM9; -. DR EvolutionaryTrace; Q9ZWM9; -. DR PRO; PR:Q9ZWM9; -. DR Proteomes; UP000006548; Chromosome 1. DR Genevisible; Q9ZWM9; AT. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0003677; F:DNA binding; IDA:TAIR. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR. DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0048527; P:lateral root development; IMP:TAIR. DR GO; GO:0048366; P:leaf development; IMP:TAIR. DR GO; GO:0009910; P:negative regulation of flower development; IMP:TAIR. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:TAIR. DR GO; GO:0009741; P:response to brassinosteroid; IEP:TAIR. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; DNA-binding; KW Ethylene signaling pathway; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1 344 AP2/ERF and B3 domain-containing FT transcription factor RAV1. FT /FTId=PRO_0000112571. FT DNA_BIND 61 116 AP2/ERF. {ECO:0000255|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 188 292 TF-B3. {ECO:0000255|PROSITE- FT ProRule:PRU00326}. FT STRAND 185 191 {ECO:0000244|PDB:1WID}. FT TURN 194 197 {ECO:0000244|PDB:1WID}. FT STRAND 198 200 {ECO:0000244|PDB:1WID}. FT STRAND 203 205 {ECO:0000244|PDB:1WID}. FT HELIX 207 210 {ECO:0000244|PDB:1WID}. FT TURN 211 213 {ECO:0000244|PDB:1WID}. FT STRAND 226 232 {ECO:0000244|PDB:1WID}. FT TURN 233 235 {ECO:0000244|PDB:1WID}. FT STRAND 236 245 {ECO:0000244|PDB:1WID}. FT TURN 246 249 {ECO:0000244|PDB:1WID}. FT STRAND 250 256 {ECO:0000244|PDB:1WID}. FT HELIX 257 263 {ECO:0000244|PDB:1WID}. FT STRAND 271 276 {ECO:0000244|PDB:1WID}. FT STRAND 279 281 {ECO:0000244|PDB:1WID}. FT STRAND 284 289 {ECO:0000244|PDB:1WID}. SQ SEQUENCE 344 AA; 38597 MW; 7349B640B3505823 CRC64; MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS // ID R0ETA4_9BRAS Unreviewed; 122 AA. AC R0ETA4; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA11981.1}; GN ORFNames=CARUB_v10002458mg {ECO:0000313|EMBL:EOA21959.1}, GN CARUB_v10012735mg {ECO:0000313|EMBL:EOA11981.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA11981.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). RN [2] {ECO:0000313|EMBL:EOA11981.1} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., Prochnik S., Nordborg M., Weigel D., Rokhsar D., RA Wright S.; RT "Genome sequencing of Capsella rubella."; RL Nat. Genet. 0:0-0(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB871039; EOA11981.1; -; Genomic_DNA. DR EMBL; KB870810; EOA21959.1; -; Genomic_DNA. DR RefSeq; XP_006279083.1; XM_006279021.1. DR RefSeq; XP_006289061.1; XM_006288999.1. DR GeneID; 17874215; -. DR GeneID; 17881215; -. DR KEGG; crb:CARUB_v10002458mg; -. DR KEGG; crb:CARUB_v10012735mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 117 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 122 AA; 14393 MW; 93EA3FFA089887CB CRC64; MEDFRINGDM IISKALSDTD FDKHGRLQLP NSQIQLVLTK MKDETKKGLK KGIKLEVLDI TKNNSYFVTL KSRNSSRDYY LETGWKNMRK SLGLKEGDNI KLYWDYLNYK FIILNFQYSL IP // ID R0EUS7_9BRAS Unreviewed; 875 AA. AC R0EUS7; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10025860mg {ECO:0000313|EMBL:EOA12887.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA12887.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA12887.1; -; Genomic_DNA. DR RefSeq; XP_006279989.1; XM_006279927.1. DR GeneID; 17875371; -. DR KEGG; crb:CARUB_v10025860mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 749 833 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 875 AA; 97080 MW; 427CD3E452F953F7 CRC64; MASSEVSMKG NRGGDNFSSS GYTDPKETRN VSVAGDGQIS HSNRSVAAER AVDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APPPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGTEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KIEPALAPPA LSPVPMPRPK RPRSNIAPSS PDSSMLTKDG TAKANMDPLP ASGLSRVLQG QEYSTLRTKH IENVECDAPE NSVVWQSSTD DDKVDVVSAS KRYGSENWMS SARHEPTYTD LLSGFGNNID PPHGQRIPFY DHSSSPSMPA KKILSDPEGK FDYLANQWQM MHSGLSLKLH ESPKAPAASD SSFQGLGNGK YSEYPVLNGL STENGGGNWP IRPRALNYFE EVVQAQAQAQ AQAQAQAQAQ AQAQAQARDQ VTKQPMTIQE EGAKSRDGNC RLFGIPLINN MNGTDSSMSQ RNNLNDAVGF TQVASAKVQD LSDQSKGSKT TNDHREQGRP LPTSNPHPKD AQTKTNSSRS CTKVHKQGIA LGRSVDLSKF QNYEELIAEL DRLFEFNGEL MAPKKDWLIV YTDDENDMML VGDDPWQEFC CMVRKIFIYT KEEVRKMNPG TLSCRSEEEV VVGEGSDAKD AKSASNPSLS SAGNS // ID R0EWE2_9BRAS Unreviewed; 393 AA. AC R0EWE2; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA13497.1}; GN ORFNames=CARUB_v10026561mg {ECO:0000313|EMBL:EOA13497.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA13497.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA13497.1; -; Genomic_DNA. DR RefSeq; XP_006280599.1; XM_006280537.1. DR GeneID; 17876524; -. DR KEGG; crb:CARUB_v10026561mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 97 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 97 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 393 AA; 45261 MW; 65E464B7CCF5D0F7 CRC64; MNVKDGNTEI IQKVKVFLEM EVLLVCLHLL LHGLIYQLFN VQIVQVKRIS YTNISGSYLC RWTLTIHLGP NRLDGVIKRI QTQAKKMVLE NGFPPLPDFL KIFNSHEHSQ RLVIPRGYNK YYPNPLPQTA VLKRPEGNFW TVKWKKGQED TISFQEGWEK FVKDNGLIDR DFLLFTYDGS RSFWVRIHRD GLPLEPSTPI KIQEISDDEI DTAGGGPDRH MEEGDSHEDM IVSLSLGTSD ELSDDDDDDD YDDDEDTAIC EFNKASGSCS KKGRVMKTRR DAVIAESVKV ETLLEDPQNP FFISTSSCSR RVLVISMQVI KDFNLKFEPT IKLIDGFGEL KRKVGKWKDR VVVYKWDEMY NRNKSMPGDI IICEILRDEG DVVHTVKVHF VKK // ID R0F284_9BRAS Unreviewed; 472 AA. AC R0F284; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA15767.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10006905mg {ECO:0000313|EMBL:EOA15767.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA15767.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA15767.1; -; Genomic_DNA. DR RefSeq; XP_006282869.1; XM_006282807.1. DR GeneID; 17879451; -. DR KEGG; crb:CARUB_v10006905mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 151 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 270 367 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 270 367 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 448 472 {ECO:0000256|SAM:Coils}. FT NON_TER 472 472 {ECO:0000313|EMBL:EOA15767.1}. SQ SEQUENCE 472 AA; 53095 MW; 1B744BC2E89FD394 CRC64; MANALSRTKP HFFQPLIPGF ENHLNIPVKF FSDHIVGKHD GRTVNLISDA SERSWQVKMQ GHRLTDGWKE FVEAHDLRIG DFLVFRHEGD MLFNVTALGP SCCEIQYSQS QPPSHEEGEE SNETEVSSRS EKQVEENVKT ECDQFSSDLN CFSLSVTASN LSRDTVCVPI HFAKRNGLNK ERQEIVLMNE EGKSWASEVK SWGGCRLTIV RGWTSFCTAN NLQVGDSRTF RLLPNTAETP VFQLFSPTKS ERRIQYAEGC IDGKTGEHRF VKLTPTPNSL HLGKQHLPAS FTRENGLINP GNIVLVDKNR AEWSMKLKAD KATGLMYIIS GNGWKSFCAA NEIVVGESLI LELIQGGVTP LLKFSSKMEE PPFEAEAQAH KRARFQTWSQ ETEPNLKMRE KTTEEGEASR ASNKSSGNQE NLHQKQPVPV SNQVAKVKDS VVDALTSIRR YMAELETTKQ KLEISLKEIN DL // ID R0F3W1_9BRAS Unreviewed; 533 AA. AC R0F3W1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16407.1}; GN ORFNames=CARUB_v10004562mg {ECO:0000313|EMBL:EOA16407.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16407.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16407.1; -; Genomic_DNA. DR RefSeq; XP_006283509.1; XM_006283447.1. DR GeneID; 17878198; -. DR KEGG; crb:CARUB_v10004562mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 295 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 426 522 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 295 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 426 522 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 533 AA; 60351 MW; 52B395A96C331DCE CRC64; MADSVLFSSA KPHFFKPILP GFNTSILIPE AFYSNYLEGR QEGNTAELRS DMSEMTWIIK MDGRRLSKGW EKFAEAHNLQ VGDILVFRHE GNLLFHVTTF GQSSCEIRYS YSSQKDDKDV KDKTGKVTTV KKTARNECSS VDTDFVVPVT ASNQRLDSVC LPRGFTNSSG LSKLCNEMIL MDEKGRPSKI KLCYKESTNR FCASRGWRAF CCKNGHQTGC FLRLILVRNG KTPVLRVFPL ERDEDNIAKC SKKTNQEVEH ESVKEEMKVD SGKLIRDRLV KKDPKSLCSS SHDTSFVVPV TASNQRLDSF NLPKGLTTSS GLSKLCKEIV FMDERGRTSI LNLSYDKSSC RFKVRRGWRA FCCRNGHEIG SFLKLILVRN GKTPILRIFP LEKDEGSIGK NSQNIKQEVE HESAKAESLS LSDNSCFVVS VTVSNLREDR LYLPVRLSRS NILKGKFHEI NLMNKHGRTW TLSLKYSKCS RKFSISRGWK CFCEANGQKP GCTFLFKLVR NRKAPVLLMT SLDGNTHQSK TGL // ID R0F3W5_9BRAS Unreviewed; 775 AA. AC R0F3W5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16061.1}; GN ORFNames=CARUB_v10004194mg {ECO:0000313|EMBL:EOA16061.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16061.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16061.1; -; Genomic_DNA. DR RefSeq; XP_006283163.1; XM_006283101.1. DR GeneID; 17878732; -. DR KEGG; crb:CARUB_v10004194mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 284 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 513 563 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 284 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 775 AA; 85220 MW; BAEF8B8877BE9BAF CRC64; MESTKVCMNA LCGASSASGE WKKGWPMRSG DLASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELLDNGSVTC ISCAKKSALF SMNVSQESNG RDSSFASAEH VGSVLERTNL KHLLDFQRIG PTQSSIQMKQ EESLLPSRLD ALRHKTERKE LQELSAQPNL SISLGPTLMT SPFHDAVIDD RSKTTSIFQL APRSRQLLPK PANSAPTAAG MEPNGSLVSQ IHVARPPPEG RGKTQLLPRY WPRITDQELQ ILSGHSNSKI IPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISLPEGLP LKIQDIKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR TEPEGKLVMG YRKATNSTAT QMFKGSSEPN LNIFSNNLNP GCGDISWSKL EKAEDMGKDN LFLQSSLTSS RKRVRNIGSK SKRLLIDSVD VLELKVTWDE AQELMRPPQS AKPSIITLEN QDFEEYDEPP VFGKKTVFVA RQTGEQEQWV QCDACGKWRR LPVDTLLPPK WLCSDNHLDP ARSSCSAPDD LSPREQDTLV RQSKEFKRRR LAASNEKLNQ SQEASAVETL ANAGITTTGE QGEIAVAATT KHPRHRAGCS CIVCSQPPSG KGKHKPTCTC TVCEAVKRRF RTLMMRKKNR GEAGQASQQA QSESRDETEV ESIPAAEAAS GDNIDLNSDP GGSRVSMMGL LQAAAFPLEA YLKQKAISNT GGEQQSSDMV STEHGSSSAA QEQEKDTNGV HEPVS // ID R0F4H1_9BRAS Unreviewed; 574 AA. AC R0F4H1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16311.1}; GN ORFNames=CARUB_v10004462mg {ECO:0000313|EMBL:EOA16311.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16311.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16311.1; -; Genomic_DNA. DR RefSeq; XP_006283413.1; XM_006283351.1. DR GeneID; 17880002; -. DR KEGG; crb:CARUB_v10004462mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 61 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 181 277 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 290 388 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 474 571 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 61 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 181 277 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 290 388 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 474 571 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 574 AA; 64569 MW; FDD3B753B846DF6A CRC64; MAESVLQTPK NPHFFQPLLP GFDSYLVLCL CLSSTIIYSL AYSKRYGSVL ETSYAFLLQN IPVTFYLKHL QGRNEHKTAK LRTDASDTVW ELKIEDGQRL TEGWKEFVTA NDFRIGDVTV FRHEGDLVFH VTALGLRGCE IEYTSSHSVD DDCDNHQENI ETRPVKKNPG REEDSSLDHS CFVANVSVSN LYEDKLYVPV GFARSSGLCK KTGKIVLLNE LGRSWKLSLD HDKSGSKTYL RHGWRSFCNA NGMNRGGYTF KLVRNSGTPV IQVCRAGCRP DAESSSDCSF FSGFVTTSNL DHDALYLPRV FVSSNGLDKG RCDEMVLKNE DGRTWNLVLR HDKSNNSVLI SRGWRSFCQV NGLKARDTFR FKLVITGGKH VLCLCSAETS RDTRVLECSE GTDVDSLSTD PSRAEESSET EESEDNGRDN TIVKEDSEEE SIEDKSSLRE CSIAEKWKHS SRPGASSSSS QSRFVTLTFS PYSFRSNKLR LPLCFTRANG IKKPGKITLL GRDGVNRMVR LLKDHENGRL RLGRDWKGFC RVHGVKIGES FVLELIWKKD AGPVLKFCTK VNCV // ID R0F4T2_9BRAS Unreviewed; 398 AA. AC R0F4T2; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16762.1}; GN ORFNames=CARUB_v10004975mg {ECO:0000313|EMBL:EOA16762.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16762.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16762.1; -; Genomic_DNA. DR RefSeq; XP_006283864.1; XM_006283802.1. DR GeneID; 17880709; -. DR KEGG; crb:CARUB_v10004975mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 162 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 292 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 162 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 292 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 398 AA; 45991 MW; 622AAEDEB289A94D CRC64; MVNSPLQSPK NPHFFQPLLP GFETHLTIPV VFFSEHIVGK HEEEKKARLR SDSSERTWEV KMDGRRLTQG WNDFVKAHDL RIGDVIVFKH EGDMVFSVTP FGPSCCEIQY PQSHIKKEHY NDDDDDDDKD DMENQHTTRE GLRKRNLKPK TEPESFVSYD YSFVANVTAS NLIFDTINLP KKAASFVALN KGCHKIILVN EEGKSWTLNL RFRESEGSYY MRGGWTRFCR ENRQKEGDMI TFNLVGDGES IPLLCICPEE VCSELMSKAK EKKKLVKRRR WEVSPSPGRN SYVTISLTAY NIKNSKITLP VEFTRVNGIT NKHEKIILED KHGVKRLTKL VRDGPDHRKR GLGKGWKLFC SVNDVLKVGE PFTLKLLWEN RTPLLKFCSK VKEEPIYV // ID R0F567_9BRAS Unreviewed; 480 AA. AC R0F567; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16551.1}; GN ORFNames=CARUB_v10004710mg {ECO:0000313|EMBL:EOA16551.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16551.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16551.1; -; Genomic_DNA. DR RefSeq; XP_006283653.1; XM_006283591.1. DR GeneID; 17880993; -. DR KEGG; crb:CARUB_v10004710mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 274 370 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 274 370 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 480 AA; 53754 MW; 4A8EE30B702E2FA9 CRC64; MAVPLSSSQP SFVISLAGHN SNPIIPQVFS TAYLKDLNDL GKLKLTSDAS DTTWDVKLNG RRFAGGWDDF SAAHCLRDDD VLLFRHDGEM VFHVTPSGRC FSQLQCKSCS SGDDETGDDE SVSKNISRKK ESRIKAESSS SEIFCLIGVT PSNLRLNRVN FSKHLSRSNG LSKRWCGIDL MNLSGESWAL GLQHDNFNGQ DYISGGWTSF CHANELKPGS FYRFKLVLNR TRPLLRLCSY IIPERNRSGA NGKANVSEKY SREGGSASTK QNKFLTVTFK HYMLQSGQLR LPRSFARENG IKQAEEIILV DKNGVKWPSY VASPKQREEF YMAHGWTSFC AANKLKTGET FTLEFVRGEG TTPMLKFCFM AKAKQEEAPE ETGAPYQKRA RVSVEVGHSR RTQAPNKSSD DPKILQRKQP LQHCSFSGEA KNVKQSIVNI LTGIKRFRSE LEIKEQSLKA SLLEIDALGE KVLKINKILK // ID R0F894_9BRAS Unreviewed; 353 AA. AC R0F894; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA17841.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10006245mg {ECO:0000313|EMBL:EOA17841.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA17841.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA17841.1; -; Genomic_DNA. DR RefSeq; XP_006284943.1; XM_006284881.1. DR GeneID; 17877993; -. DR KEGG; crb:CARUB_v10006245mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA17841.1}. SQ SEQUENCE 353 AA; 40363 MW; F39A017F3C31F3B2 CRC64; VIPISYYDQL PRVLPKKVIL QGPGGGSWNV ATKIRGEEVH LAQGWSKFVE DNTLNDGDFL TFIYNGDRIF EVSIYRSDGC KETCEVTEVE DEKVDSVCSL SSDDTDTCPK PEMNNTIPKG RDKGKSKVQV VEDSDEHENS VYSESSDETK TDSDTDSEFK IAKKTTPKRM NKGKKKKEAV EESFDEDGDG DSDSDYVEAF GQLDVEEKSD SEDSSYAPEN EDTAATTCVK PKVPNLKRKV EPKIKNPETY LDDPKNIHFE TNVKNRLYEL LVHAQLVKDY CLTFGDHVDY IDRFGKLRAK TAKWKDQRVC IKRWMRICKR NELKKEDRIL CELLRRGSFV YAIKLHVIRG ENL // ID R0F8V9_9BRAS Unreviewed; 683 AA. AC R0F8V9; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=CARUB_v10006513mg {ECO:0000313|EMBL:EOA18066.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA18066.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA18066.1; -; Genomic_DNA. DR RefSeq; XP_006285168.1; XM_006285106.1. DR GeneID; 17877688; -. DR KEGG; crb:CARUB_v10006513mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 568 660 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA18066.1}. SQ SEQUENCE 683 AA; 77439 MW; CE0C50C96E1CB264 CRC64; NDGVGQTILA EVSNETSECL YDELWKLCAG PLVDVPQAGE RVYYFPQGHM EQLEASTRQD LNTRKPLFDL PPKILCNVMN VRLQAEKDTD EVYAQITLIP VGTEVDEPMS PDTSPPETQK PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGENGEL RVGVRRANRQ QSSMPSSVIS SHSMHLGVLA TACHATQAKT MFIVYYKPRT SQFIISLNKY LEAMDNKFSV GMRFKMRFEG EDSPERRYSG TVIGVKDCSP HWKDSKWRCL EVHWDEPASI PRPDKVSPWE IEPFVTSESV PQSVMVKNKR PRQFSEVSAL DVGITASNLW SSVLSQSHEF AQSCITSQRS PSQQCYRDST EDAKKSDWLN NSYSVSNVSK ESTLNDQMIS PVEQKKPETT ATYRLFGIDL MSPIEEKTAP MRPINITTPT MDSNSDPKSG ISKVPEEKKQ EPAQTSPKEV QSKQNSSTRS RTKIYISTRP WRSVIHEFQI KYTSVYDVCG IEHDPDSVID EQVQMQGVPV GRAVDLAALN GYNELIEDLE KLFDIKGELQ SRNQWEVVFT DDEGDMMLVG DDPWPEFCNM VKRIFIWSKE EVKKMTPGNQ LRMMLTEVET TFTTTSKTDN HSN // ID R0F969_9BRAS Unreviewed; 489 AA. AC R0F969; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA18211.1}; GN ORFNames=CARUB_v10006696mg {ECO:0000313|EMBL:EOA18211.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA18211.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA18211.1; -; Genomic_DNA. DR RefSeq; XP_006285313.1; XM_006285251.1. DR GeneID; 17878853; -. DR KEGG; crb:CARUB_v10006696mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 152 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 275 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 152 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 275 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 489 AA; 55060 MW; 5E93A4C5C4F14C26 CRC64; MADPPRFSLF HQKFLTGDKP LLTLHAEFLM NHMKVSLISD ASDKVWKVKL DGGRLADGWE EFTGEHKFRD GDVLVFKHQG DDVFHVSVAS GSVSGDIHHA SSSHVDTEDT CIADDYVDDD DDDDDDDETN DDDDDDGESK DAADIDDDGD GNRARCVTRY SLNKDRLDLS RKYTVLFGEH QKACEIDVMN EQGRIWTMKL AKNISSGVFY IRAGWEHFCF TNDLKQGDLC KFKLFQNGKK PVLWLCPQEP GNDHKEKRTL DEVSKAKEKK APSPTVIVKY TPSRDSTGQL SLPVSFTREY GIKKAGDVIL LNQDGRKWSS YLQITGLGRG GSEWFYLRKG WREMCEANGV KVNDSFKLEL MWNGETPMFK FCSKIDNHEY KGKGNQKTCK KRACETAPQP RNVKKTPRVG VEGQVNKRIS SGPLQPQSFS VSDQVASVKQ GIVDTLNTVR QCRTELETSE QNLQASLLAI DALGERIWGI SKILSNNLI // ID R0FC88_9BRAS Unreviewed; 276 AA. AC R0FC88; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA19697.1}; GN ORFNames=CARUB_v10003492mg {ECO:0000313|EMBL:EOA19697.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA19697.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA19697.1; -; Genomic_DNA. DR RefSeq; XP_006286799.1; XM_006286737.1. DR GeneID; 17882939; -. DR KEGG; crb:CARUB_v10003492mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 237 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 237 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 31491 MW; 334B8548D19E5210 CRC64; MLPKGVIDKI QANVSTPWFW KSLSPGLNWK SKSMRIIPEK FVISTLGAFK HRVVISVRWE HSWQLWLEQG DDDLYMKGED WDEFVDDNHL GPNDNLFFRH DDTMFLEVKI FKDNGDEIMD VPLEVEPETE PLHPNLHDSH KETTTASASV EFSANGRAKQ GCSDVKNPER YLLNPENPYF VKTLAKSNNV LYVPRPVIEK YGLKFGPTES TVDYLLPTEK KVGKPRFYSG GQTVCISGWT GLCQTYNLKI GDSVVCEFER SGGLVRAVRV HLVNEI // ID R0FFQ7_9BRAS Unreviewed; 331 AA. AC R0FFQ7; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA21067.1}; GN ORFNames=CARUB_v10001406mg {ECO:0000313|EMBL:EOA21067.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA21067.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA21067.1; -; Genomic_DNA. DR RefSeq; XP_006288169.1; XM_006288107.1. DR GeneID; 17882065; -. DR KEGG; crb:CARUB_v10001406mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 142 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 331 AA; 37939 MW; 5E4222C05384F042 CRC64; MNMSTMNSEQ ELAENGAGGS GGGDNNYFYT AEMREHMFDK VLTPSDVGKL NRLVIPKQHA ENYFPLEDNQ NGTVLDFQDR NGRMWRFRYS YWNSSQSYVM TKGWSRFVKD KKLTSGDTVS FHRGFIPDDN APERRLKIMF IDWRHRDTHN NYGFGSPPYP TASFYPPPQY PMPLPSYRSF PPFYHNQYQE REYLGYGYGR LVNGGRYYAG TPLDHHHHHQ WSLGRSQPLV YESVPVFPAA RAPPPPPAPP QPPITRRLRL FGVDVEESSP YVETRGEMGV AGHSSSSPVV IGDDDQLSWR LPSGEVDAST SLPMQLSDDE DYKRKGKFSE Y // ID R0FG33_9BRAS Unreviewed; 298 AA. AC R0FG33; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA21232.1}; GN ORFNames=CARUB_v10001579mg {ECO:0000313|EMBL:EOA21232.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA21232.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA21232.1; -; Genomic_DNA. DR RefSeq; XP_006288334.1; XM_006288272.1. DR GeneID; 17884324; -. DR KEGG; crb:CARUB_v10001579mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 34003 MW; AD8B6478D337E0F4 CRC64; MACNPEFLKC YEERKQESFF KVVNSVAISS ENMRAIPHDF ARKFSDNELL GKMKIRVHWG SSWEVKISKN PRFYFMEKSG WEKFVTDNAL GRNEFLTFTH KGKMHFSVNI MKQIGKEMLQ PPQTRAFFAS SSRFKTEQGV KTEEEVVSSD LNSRGPRTAP ESNGEGMCRR KLNFEKKKAE ESQNSKRTER VVGIQRDFAG TSSSSVAGFS IVITKSYLTS LALPVSVVNF MPRVKSVVKI HHPNGKKLWK VVFLVTRRGR LFSGGWRSLC MDYPVALGDT CKFTLINPHE LLLVVTKP // ID R0FIQ9_9BRAS Unreviewed; 308 AA. AC R0FIQ9; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA21931.1}; GN ORFNames=CARUB_v10002417mg {ECO:0000313|EMBL:EOA21931.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA21931.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA21931.1; -; Genomic_DNA. DR RefSeq; XP_006289033.1; XM_006288971.1. DR GeneID; 17884127; -. DR KEGG; crb:CARUB_v10002417mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 215 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 215 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 35425 MW; 4A51A8AC2842A416 CRC64; MVSNRAFGQL MEEGYNPAFF KILRREDSSS EIMRMIPHHL IRSISDKSSS FKMVLKVPWG NSWSVKISKN PVFYYMEDRG WNQFVNDNGL GENEYLTFTH EANMCFNVSI FEANGTEMLR PRKSSPVASS SGGNKREERR SIYIDVKKEE GTESCSESRY PDLKTAESTS GRSKQKQKFN LRQKEAEETK KSKKSKNRKV NTVCNDFEAG TSSLVPEFKL TIKKSHLLFL GIPKKFVDMH MPNEAKMFKI RHPRGKKSWE VSYVVTDVQS RFSAGWSRLA KELGLEVGDV CTFKLIKPTE MHVKVSKE // ID R0FJ18_9BRAS Unreviewed; 276 AA. AC R0FJ18; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA22041.1}; GN ORFNames=CARUB_v10002566mg {ECO:0000313|EMBL:EOA22041.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA22041.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA22041.1; -; Genomic_DNA. DR RefSeq; XP_006289143.1; XM_006289081.1. DR GeneID; 17881394; -. DR KEGG; crb:CARUB_v10002566mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 32166 MW; CABED74738D2A874 CRC64; MLPKSVVDKL QENVSKPCFW KSLSPGQNWK SKSMRIIPEK IVGSTPGAFE HRVVFSVRWE NSWQLWLERD KDDLFMQEED WNEFVDDNHL GPNDTLFFRH DDTMDFEVQI FKNNGYEIMD VPLEVELETE PLHHKPQNSH KETVTVSASG SENGGTNGRV RHRRDVMNPM RYLLNPENPH FVKVVTKRND VLYMSRPVIH RYRLKFGPLH STIDFLLPGG QKEEGILRFY NGQPCFSGWS VVCRKYKLNV GDYVVCEIER SGSLVTGVRV HFVNED // ID R0FJ39_9BRAS Unreviewed; 149 AA. AC R0FJ39; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA22422.1}; GN ORFNames=CARUB_v10003066mg {ECO:0000313|EMBL:EOA22422.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA22422.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA22422.1; -; Genomic_DNA. DR RefSeq; XP_006289524.1; XM_006289462.1. DR GeneID; 17883472; -. DR KEGG; crb:CARUB_v10003066mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 118 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 149 AA; 17388 MW; C9D5F2DD6AAFF793 CRC64; MENFEIDGDM IISKTLSKTD VDNHGRLVLP KNQMLLVIQK MKDITKKNLL KGIQLEVLDI IQNNSYSVTL KLAKNTSKDF VLGPGWNNLK KSLGLKKGDN IKLYWDYLRY KFIILNFEYR LIPKSDNVME IGAYMSTHNF LLLFYFMLC // ID R0FLU3_9BRAS Unreviewed; 306 AA. AC R0FLU3; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA22941.1}; GN ORFNames=CARUB_v10003677mg {ECO:0000313|EMBL:EOA22941.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA22941.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA22941.1; -; Genomic_DNA. DR RefSeq; XP_006290043.1; XM_006289981.1. DR GeneID; 17883094; -. DR KEGG; crb:CARUB_v10003677mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 210 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 210 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 35284 MW; 9582B60558BA8C86 CRC64; MVKNRAFGEI MDDGDKPGFF KILRRATLSS ETMRGIPLNF IRSISEKQLS AKMVLKVSWG SSWAIRISRN PRFYFMEKKG WDQFLSDNSL GNDEFLTFTH KGNMCFAVDI YQIDGKELLR QRRSATTVAS SSGRNKREQR KNIYKHVKRE EVESWSESSY PGHESAESIG RRQKLSSKTR EAEETEKSKK KKMKVDNICD DSEDDTMSLV PEFSITIKKS YLIFLGIPKL FEELHMPKVT TMFKIHDPEG ENSWNVMFKI TGVQSRFSAG WIRLAKDLSL VVGDVCTFTL IKPTEMLVKV SRFKTP // ID R0FT39_9BRAS Unreviewed; 593 AA. AC R0FT39; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10018954mg {ECO:0000313|EMBL:EOA25606.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA25606.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870809; EOA25606.1; -; Genomic_DNA. DR RefSeq; XP_006292708.1; XM_006292646.1. DR GeneID; 17885799; -. DR KEGG; crb:CARUB_v10018954mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 489 581 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 593 AA; 66836 MW; 05AA318E1405F457 CRC64; MASVEGDGDF RTSLSSSYHD QLYTELWKAC AGPLVEVPRP QERVFYFPQG HMEQLVASTN QGIKSEEIPK FNLPPKILCR VLGVTLKAEH ETDEVYAQIT LQPEEHQIEP TSLDPPLVEP AKQMFHSFVK ILTASDTSTH GGFSVLRKHA TECLPALDMT QATPTQELVA RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVGS KTLFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF EGEESPERIF TGTIVGTGDL SSQWPASKWR SLQVQWDEPT TFQRPDKVSP WEIEPFLPTS PNSSPTQQPQ SKCKRSRPIE PSVITPAPPS FLYSFPQSQD SINATIKVFQ DPPLERNSGG YSSNNNFKAE TPPPPTNGCY RLFGFNLTSN PPAPILLDKQ PNETSGAATC QESITPSSTN EQRKQQTSRS RTKVQMQGIA VGRAVDLTLL KSYDELIKEL EKMFEIQGQL RPRDKWVVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSR DEVKKMTTKL KHYSSLENED GKE // ID R0FUN0_9BRAS Unreviewed; 787 AA. AC R0FUN0; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA26612.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10022672mg {ECO:0000313|EMBL:EOA26612.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26612.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA26612.1; -; Genomic_DNA. DR RefSeq; XP_006293714.1; XM_006293652.1. DR GeneID; 17890131; -. DR KEGG; crb:CARUB_v10022672mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 278 373 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 611 706 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 114 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 278 373 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 611 706 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA26612.1}. SQ SEQUENCE 787 AA; 89138 MW; 16520D332549DA81 CRC64; FDCSSSQNSL ILDSPINPEG DMMFQVADHQ DNNIEFQRNK KVKQNNHETE SDYSYALVRL YYFDFCLVCS DLVYSPTQTK YLPQDLTSSN GLTRKCSKSP RQIFSSYSSS EKQFVTFRLA PVDGRHCRLR LPMQFTRENG INKPGKIYLL GKDGSKWLAN LLSESNRGRM TLGDGWKSFV KANGLKTGES VTLRLYWEDT TPVLSLCPEV YNTETRVGEE CLDASEKESF PIEPSSKVEI IKDDINKDKN TKDESSSWER ENHHMRCMDS TSPSQNHILT LKITPDCLKH GRLRIPLQFM TENSMNKPGE ITLLGKDGAK WLASLLLEKR GRMSLGKGWK EFAKANGLKT DDSITFELIW ENATPILKLL RIESSYGRRE SGFSKESLTM EPNRGNKTKK ADNNREESKM YPPRCRESTT TIQNQFMALT FTCNTISLGA HDPQTREAFI FRHEGDNMLH ISDLGHSCFG IRDVTAPSSK NDHDRIGNIS MKMHPHLSQE AGFSSYDGDD HGNFEGPSKK VKKNNPETQE DYSSDHSRFV TTSSLHANAL SLAVKESLPI KPSNVRKISE YDNNKDENSK EENNIEVSSS CEREKNHLRC IASISPSQNR YVTLTITPDS LRQGRLRLPL EFMTENGMNK PGEITVLGKD GVKWLVSLLL ERRGRLSLGK GWKDIAKENG LKTGDSITLE SIWEDASPML KLLHIESSSV SCFTDASSGH KTREAENIRE ESSSSPKLKK RTYCPRKRDS SSDIQNRFLT LTLTHEDVRD GNLVSLLKHL FALEVIS // ID R0FVP9_9BRAS Unreviewed; 700 AA. AC R0FVP9; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10022755mg {ECO:0000313|EMBL:EOA26676.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26676.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA26676.1; -; Genomic_DNA. DR RefSeq; XP_006293778.1; XM_006293716.1. DR GeneID; 17889789; -. DR KEGG; crb:CARUB_v10022755mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 587 675 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 700 AA; 77364 MW; 380F0D9471CDC881 CRC64; MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFSKITLL PLPGNDLDLD NDAVLGLTPP PSDVNVNGNE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYTAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNGLASDN NPYPGFSGFL RDDETTTTTT SKLMMMKRNE GNTAAAGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPRKKI RMPQPFEFPF DGTKFPIFSP GFASNGAGES VCYLSNDNNN APAGIQGARQ AQAQQLFGSP SPSLLSDLNL SSYSGNNKLQ SPAMFLSGFN PRHHYDSIVS RQGRDMENGN NISCSLTMGN PGMVQDKKKS GGSVKTHQFL LFGQPILTEQ QVMNRKRSLE EEAEAREEKG SAARGLTWNY GFQGLETGHC KVFMESEDVG RTLDLSVIGS YQELYRKLAE MFHIEERLDL LTHVVYQDAN NVTKRIGDEP FSDFMRATKR LTIKMDIGGD SVRKTWITGI RNGENGIDAS AKTGPLSIFA // ID R0FW44_9BRAS Unreviewed; 562 AA. AC R0FW44; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA26826.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10022918mg {ECO:0000313|EMBL:EOA26826.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26826.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA26826.1; -; Genomic_DNA. DR RefSeq; XP_006293928.1; XM_006293866.1. DR GeneID; 17887956; -. DR KEGG; crb:CARUB_v10022918mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 149 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 462 559 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 149 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 462 559 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 387 426 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA26826.1}. SQ SEQUENCE 562 AA; 64216 MW; 69BFE6AB9919D882 CRC64; FPKNTDTFGD LELLKILGMA NKHFFKPLLP GFHSHLTIPV AFFLKYIEGR DEQKSTAELT SDVSKIIWNV KIDGQRFTDG WEEFAIAHDL RIGDIAIFRQ ERHLAFHVTL LGPSSCELQY GSCFDQESNL EEKKSPNKEA ETSSLDPSCF VAKVAPSSIR YDLLLFPRPF VKANSRVING SGEIVLMNEK GRTWTFKLHK KPACGNVYIR GGWRVFCDAN GLKDGDTFTF KLIQRGGTRV LRLVPKEPVE EEANDVSPST EPECHEDSNI GKIQKKMETE KNPRRETESS SLDTSCFVAN ISPSMLRYDT MYLPKWFMRE NGIDGRCGDM ILLNEKGRSW TLDLRRKSCG TAFLRGWRSF CLDNGLRAKM VVTFKLIKKE GTLTLRLTPN EAEEEEQEEE AKEEEEEEAK EEEEEEVKEV ESLSTDHGSN KESSQNKKIS QESSKKRRLR WNSSSSPSKN RFVTLSLRPY NISCSVMRFP IPFTRTNGIN KETKMALLDK QGRKWSTKLR SEGANSERLR LVGGWKGFLE ANGVKANESI KLELIWEEET TCVLKFRSKV NL // ID R0FW98_9BRAS Unreviewed; 531 AA. AC R0FW98; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA26881.1}; GN ORFNames=CARUB_v10022974mg {ECO:0000313|EMBL:EOA26881.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26881.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA26881.1; -; Genomic_DNA. DR RefSeq; XP_006293983.1; XM_006293921.1. DR GeneID; 17887676; -. DR KEGG; crb:CARUB_v10022974mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 138 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 263 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 435 530 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 138 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 263 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 435 530 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 60281 MW; E97A043B03ADC1EC CRC64; MVNQPLYSPI NPHFFQPLLP GYSNHLDIPV AFFLKHLVGS NEGKTTAELR SDASEKITWK VKIDGRRLSH GWDGFVIAHD LRVGDIVVFR HEGELVFHVS ALGPSCCQIQ YTEDKREKKQ SLKREAADSE PDHSLDSCFV LTVTASNLRR DTVYLPKGFA RSNGLMNKYQ IVLINEKGES WTIDLRHELN PSVRFNMRRG WRSFCVANGK KPGDLIAFKL VQNEETPVLK LFPMDSEVPE ILENLPRKRS GRSEVDDSPD CSSFVARVTT SNLSRDRMYL PKTFIESNGL LKKFQMLLMN EEGESWKIDV KHEAYSGRFL TIRGWKSFCL ANGKKPGDSF TFKLVENDEV PVLRLFPFNS EDSHKVEPSN DTRQGKCLKA TKKEFLGVEA TEKEFLGVEV RRNDSTARVE EPTNDDRRKA IKQEYVSTKG NSSRSQNRLV TLTLTPASKL NLPLEFMKAI GINKAGKITM VDRYGGRWST PLLMDKRSGT MSLGRGSKGF CEINGVKMNE SFVLELIWED TVPILKFCSK V // ID R0FXT0_9BRAS Unreviewed; 320 AA. AC R0FXT0; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA27516.1}; GN ORFNames=CARUB_v10023656mg {ECO:0000313|EMBL:EOA27516.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA27516.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA27516.1; -; Genomic_DNA. DR RefSeq; XP_006294618.1; XM_006294556.1. DR GeneID; 17889130; -. DR KEGG; crb:CARUB_v10023656mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 43 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 43 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 35896 MW; BB0A2C1ABBB0D7E5 CRC64; MMTDLSLSRD GEEEEEEDVE KKPSQEEEEE AGAREVAERE HMFDKVVTPS DVGKLNRLVI PKQHAERFFP LDSSSNEKGL LLNFEDLTGK SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR CVGDSGRDSR LFIDWRRRPK VPDHPHFSAG AMFPRFYSFP STSYNLYNHQ QLQRHHHGGG YNYHQIPREF GYGYFVRSVD QRMNNSAAVV ADPLVIESVP VMLNGGASQG LVGTAGKRLR LFGVDMECGE SGITNSTEEE SSSSGGSLPR GGGGASSSSS LFQLRLGSHS EDDHLISKKG KSSLSFDLDQ // ID R0FY44_9BRAS Unreviewed; 276 AA. AC R0FY44; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA27671.1}; GN ORFNames=CARUB_v10023826mg {ECO:0000313|EMBL:EOA27671.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA27671.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA27671.1; -; Genomic_DNA. DR RefSeq; XP_006294773.1; XM_006294711.1. DR GeneID; 17889313; -. DR KEGG; crb:CARUB_v10023826mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 32011 MW; 592692559391814A CRC64; MKTQGSNGDL SQKFFRVYIP NVTEDNMNLP FVSNMISGTP LPRKVTVRSV SSGNTWRMEM TTNRESDTVF LRDGWKKIFK DENLIEPIFL VFEFDGSRVF HFCVYEHSSM CKRMRSHIEQ EVIEVESDEE CEDDDGDDVT VEDEESTKGS DEWPGRKERG GTSRKTDSHD KLDEYLDDEL NPSFPVDLTQ PRLRIPSILI KDYNLTFSNL VIVRDKIGKM KRRISVWKNR SVYLNGLSSV IRRNHVKPGD KMLCELRMVD GYHGLVHEIK VHIIKG // ID R0G0L1_9BRAS Unreviewed; 607 AA. AC R0G0L1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10025185mg {ECO:0000313|EMBL:EOA28937.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA28937.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA28937.1; -; Genomic_DNA. DR RefSeq; XP_006296039.1; XM_006295977.1. DR GeneID; 17889755; -. DR KEGG; crb:CARUB_v10025185mg; -. DR KO; K14486; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 607 AA; 66833 MW; C8FEB73248AF5B16 CRC64; MGGLIDLNVM ETEEDETLTQ TPSSASGSVS PTSSSSASAS AVSSSSGGGV CLELWHACAG PLISLPKRGS LVLYFPQGHL EQAPDFSAAI YGLPPHVFCR ILDVKLHAET TTDEVYAQVS LLPESEDIER KVREGIIDID AGEEDYEVLK RSNTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QPRPSQELLA RDLHGLEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGDDG KLRLGVRRAS QIEGTAALSA QYNQNMNHNN FAEVAHAIST HSVFSIYYNP KASWSNFIIP APKFLKIVDY PFCIGMRFKA RVESEDASER RSPGIITGIS DLDPIRWPGS KWRCLLVRWD DIEANGHQQR VSPWEIEPSG SISNSGSFVT TGPKRSRIGF SSGKPDIPVS EGIRATDFEE SLRFQRVLQG QEIFPGFINT CSDDGAGARR GRFKGTEFGE SYGFHKVLQG QETVPAYSIT DHHRQHGLSQ RNIWCGPFQN FSTRILPPSV SSSPSSVLMT NSNSPNGRLE DHHGGSGRCR LFGFPLTEET TSVVSPTVVP CVEGNPMKGA SAVQSNHHRP QGRDIYAMRD MLLDIAL // ID R0G129_9BRAS Unreviewed; 133 AA. AC R0G129; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA29087.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10025359mg {ECO:0000313|EMBL:EOA29087.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA29087.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA29087.1; -; Genomic_DNA. DR RefSeq; XP_006296189.1; XM_006296127.1. DR GeneID; 17888549; -. DR KEGG; crb:CARUB_v10025359mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 127 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA29087.1}. SQ SEQUENCE 133 AA; 15542 MW; B66B78226987D392 CRC64; INLLFQKRVK MENFKIDGDM IISKTLTRTD VDQHGRLLLP KSQVLTVLQK MNNVTQESLQ NGIELEVLDM TKNHSYSVIL KSRNASNDYV LATGWSTLKH SLELKEGDNI KLYWDYLNYK FIILNFEYSL IPF // ID R0G8Q0_9BRAS Unreviewed; 790 AA. AC R0G8Q0; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10025912mg {ECO:0000313|EMBL:EOA12929.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA12929.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA12929.1; -; Genomic_DNA. DR RefSeq; XP_006280031.1; XM_006279969.1. DR GeneID; 17875237; -. DR KEGG; crb:CARUB_v10025912mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 171 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 667 749 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 171 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 790 AA; 88005 MW; C8FAD7F43FF70089 CRC64; MEFDLNTEIA EVEEEENDDV GVRIDKARLG ISPSSSSSCS SGSSSSSSST GSASSIYSEL WHACAGPLTS LPIKGNVVVY FPQGHLEQDA MVSFPSPLEI PKFDLNPQIF CRVVNVQLLA NKETDEVYTQ VTLLPLQEFS MLNPEGKEVR ELGGDEERNG SSTVKRTPHM FCKTLTASDT STHGGFSVPR RAAEDCFAPL DYKQQRPSQE LIAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SGDAVLFLRD EDGELRLGIR RAARPRNGLP DSVIEKNSCS NILSPVANAV STKSMFHVFY SPRATHAEFV IPYEKYVTTI RNPVCIGTRF RMRFEMDDSP ERRCAGVVTG VCDLDPYRWP NSKWRCFLVR WDESFVSDHQ ERVSPWEIDP SVSLPHLSIQ SSPRPKRPWA GVLDTTPPRK PITERGGFLD FEESVRPSKV LQGQENIGSA SPSQGFDVLN RRILDFAMQS HANPVLLSSR VKDRFGEFVD ATAIDPACSG VMDLDRFPRV LQGQEICSLK SFPQFAGFTP AATSGKPTLG YTDPFARQAN KSSFYPLALH GIRSTHVPYQ NPYNAGNQSS GRPSRAINFG EETRKSDALN ESGLPNNVTA DLPFKIDMMG KQKGGEFNMN VSSGCKLFGF SLPVETPTPN PQGSSKRICT KVHKQGSQVG RAIDLSRLNG YDDLLTELER LFNMEGLLRD PEKGWRILYT DSENDMMVVG DDPWHDFCNV VWKIHLYTKE EVENANDDNK SCLEQAALMM EASKSSSVSQ PDSSPTVTRV // ID R0G9A5_9BRAS Unreviewed; 303 AA. AC R0G9A5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA32237.1}; GN ORFNames=CARUB_v10015496mg {ECO:0000313|EMBL:EOA32237.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA32237.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA32237.1; -; Genomic_DNA. DR RefSeq; XP_006299339.1; XM_006299277.1. DR GeneID; 17891901; -. DR KEGG; crb:CARUB_v10015496mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 303 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 303 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 35102 MW; 58E517687B00AB0E CRC64; MARNGDYLRC LQERKHEGFF KAVQSIDVAS ENMRALPHDF VRSFSDKELS CKMKIRTQWG RSWEVEISKN PRFYFMEKSG WDKFVKDNAL GHSEFLTFTH NGNMCFTVNI FKQNGKEMLQ PSHSRAFLAS SSRVKTEQRR GSVYNDFKKE EVLSPELSNR SPTTVVESNG GESYKRKLSF GKKKAEETQN SKRTEKVVRA RRDSAGASSS SVSEFTILFK KANQIFQRIP VSFAKDHMPE EKTMFKIHHQ DGKKSWNVIY LMKFRSFSGG WRSVVKEYPL DPGDTCKFTL IEPNELLLVV FKP // ID R0GA33_9BRAS Unreviewed; 207 AA. AC R0GA33; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA32527.1}; GN ORFNames=CARUB_v10015809mg {ECO:0000313|EMBL:EOA32527.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA32527.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA32527.1; -; Genomic_DNA. DR RefSeq; XP_006299629.1; XM_006299567.1. DR GeneID; 17893020; -. DR KEGG; crb:CARUB_v10015809mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 207 AA; 23937 MW; 45CEABF505D24E32 CRC64; MVTTRKTMAR DTFSSHRRQP QDPESPVKKF FKLVLPSTME NNMMRIPPKF VKLQGSKFPD VVTLETPVGF KRSIKLKRIG QEIWFHEGWS EFAEAHSIKE GHFLSFEYDE NSSFHVIIFN VSASEIDYPP DALQISDSDD DIVDITDKGF IGTQGTRNND QSVNGEHKLK KRPRDIELDK ILHKVDVLDS NQVLKEEEED DKRVFRG // ID R0GC66_9BRAS Unreviewed; 665 AA. AC R0GC66; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10022415mg {ECO:0000313|EMBL:EOA33332.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA33332.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870806; EOA33332.1; -; Genomic_DNA. DR RefSeq; XP_006300434.1; XM_006300372.1. DR GeneID; 17895753; -. DR KEGG; crb:CARUB_v10022415mg; -. DR KO; K14486; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 542 635 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 73855 MW; 17A24BC5FBBB8813 CRC64; MAATNPSSEK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE LDQSEPISPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NVPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP APTTGPSAAV TPDSVWKSPA DTPSSVPLFS PPAKAAMFGP GGNKSFGVSI GSAFWPTHAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAVDL TRSECYEDLF KKLEEMFDIK GELIESTKKW QVVYTDDEDD MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLTVNA RMQPKNDVEE NGNTEGRSSS MAGSR // ID R0GF16_9BRAS Unreviewed; 824 AA. AC R0GF16; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10004139mg {ECO:0000313|EMBL:EOA15344.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA15344.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA15344.1; -; Genomic_DNA. DR RefSeq; XP_006282446.1; XM_006282384.1. DR GeneID; 17880409; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 718 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 824 AA; 91518 MW; 266C8C794E9DA3D0 CRC64; MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SPSEFVIQLS KYIKAVFHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDTVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGEL GSGLTWLRGG GGDQQGLLPL NYPSVGLFPW MQQRLDLTQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYV QQSASHNSDL MLQQQQQQQQ QQASRHAMHA QTQVMSENIP QQNMRQEVSN HPTGQQLQQP DQNAYLNAFK MQNGHLQQWQ HQEMASPSFM KSDFTDSSNK FATSATPMQQ NAASPASNDG SNLLNFSITG QSVLPEQLTT EGWSPKASNT FSEPLSLPQA YPGKSLALEP GNPNLNPQNP SLFGVDPDSG LFLPSTVPRF ASSSGDAEAS PMSLTDSGFQ NSLYGCMQDT THELLHGAGQ INPSNQTKNF VKVYKSGSVG RSLDISRFSS YHELREELGK MFAIEGLLED PLRSGWQLVF VDKENDILLL GDDPWESFVN NVWYIKILSP EDVQQMGDQG EGSAGSFPQN PTHL // ID R0GJY3_9BRAS Unreviewed; 163 AA. AC R0GJY3; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA12605.1}; GN ORFNames=CARUB_v10027266mg {ECO:0000313|EMBL:EOA12605.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA12605.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA12605.1; -; Genomic_DNA. DR RefSeq; XP_006279707.1; XM_006279645.1. DR GeneID; 17875924; -. DR KEGG; crb:CARUB_v10027266mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 18 {ECO:0000256|SAM:SignalP}. FT CHAIN 19 163 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004341974. FT DOMAIN 64 155 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 155 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 163 AA; 18343 MW; C18D1478D038F3D2 CRC64; MNLRVFCLVL VLQVDVERVQ IRRRGVSKRR DLSNRVYVSE EVRDDAIARA EKFQADLGSD YPSFVKSMLQ SHVSGGFWLG LPVHFCRSHL GKHDGVITLI NEEGDEYETV YLARRTGLSG GWMGFAVAHN LAYGDTLVFE LISPTAFKVY ITRVESSGES SEI // ID R0GPB9_9BRAS Unreviewed; 689 AA. AC R0GPB9; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA37626.1}; GN ORFNames=CARUB_v10012060mg {ECO:0000313|EMBL:EOA37626.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA37626.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA37626.1; -; Genomic_DNA. DR RefSeq; XP_006304728.1; XM_006304666.1. DR GeneID; 17897308; -. DR KEGG; crb:CARUB_v10012060mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 284 320 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 399 480 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 493 592 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 284 320 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 399 480 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 493 592 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 689 AA; 78059 MW; A144758B9B89FA16 CRC64; MADQSLRSPT KPHFFKPLLP GFRTHLNIPV AFFSKHVEGR NDQNKTARLR SDASDETWLV KMDGLKLTDG WEEFAFAHDL RIGDIVVFRH EGEMVFHVTA LGPSCCEIKY TSPSSHNMIN DDQTNIVSRN SSRVKKNTRK KVESSSNHSR FVANVTAWGL SNDRLNIPLT FARLNGLNKM RGKKIYLHNE EGRSWKLGLV HDKAGMHTYF KSGWRSFCAA NGISQGRYTF QLVRKSAPPV IRLCRSNQRS AAESASDHSC FKRHVSPSSL RYDQLYLPRS FVSSNGWTNF CHVNGIKVGD FFKFKLAGTW EEPVLSLCPA ESNRDKTPLK CSEISNDVNP EESEEETTGD KNISRHYLDL KKRKYRSRCR ASVENMDDDQ TNIVCERLIK LCDGILQYLP LTFERSNGLH KKSGERIVLL DGEGRSWNLN LKYNEAGMHT YIRPGWTRFC DANGMSQGQQ FTFKLVQKAA PPIMRLYLAK RRPISESSSH HSYLVGSVTA SSLTTDRLCL SRSFVRSSGL DKGYEEIVLE NEWGKGWNLV LKHYKSCCST ILGGGWTTFC QDNGLKPGDS FKFKLVGTGE RPVLSLFLAD SNHVSNHEKT PLECPEGSDD VKYLSSSSGD DSSKSNESGN ESIDGRNKNN SQYSGEIKKR KYFWKCRASS PSYTQDRFVT LTLTQSAFQT YKLVSFINN // ID R0GQN1_9BRAS Unreviewed; 359 AA. AC R0GQN1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA38071.1}; GN ORFNames=CARUB_v10009540mg {ECO:0000313|EMBL:EOA38071.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA38071.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA38071.1; -; Genomic_DNA. DR RefSeq; XP_006305173.1; XM_006305111.1. DR GeneID; 17897802; -. DR KEGG; crb:CARUB_v10009540mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 40576 MW; 4EED1EF71058ED8F CRC64; MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGTGNNNN NLPMMMIPPA EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FQPLPEYNSV PIHRSLNLAN HQRSYYNNNQ RQEFVGYGYG NLAGRCYYTG SPLDQRNIVG SEPLVIESVP VVPGRLTPVM LPPLPAPPST AGKRLRLFGV NMECGNDYNQ QEDSWLMPRR EMGASSSSSS SALRLNLSTD HDDDDDDDGG DDDQFAKKGK SSFSLNFNP // ID R0GQT6_9BRAS Unreviewed; 347 AA. AC R0GQT6; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA38141.1}; GN ORFNames=CARUB_v10009612mg {ECO:0000313|EMBL:EOA38141.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA38141.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA38141.1; -; Genomic_DNA. DR RefSeq; XP_006305243.1; XM_006305181.1. DR GeneID; 17899983; -. DR KEGG; crb:CARUB_v10009612mg; -. DR KO; K09287; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 118 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 190 294 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 118 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 190 294 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 38782 MW; 4556C7EE8A697768 CRC64; MEVSSVDEST TSTGSICETP AISPAKNSSS VGNNLYRMGS GSSVVLDSEN GIEAESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDVAVHRFRG RDAVTNFKDV RMDDDEVEFL NSHSKSEIVD MLRKHTYNEE LEQSKRRRNG SGNTVRTMLT SGLSNDGAST TEFRSAEPLF EKAVTPSDVG KLNRLVIPKH HAEKHFPLPS TSVSVKGVLL NFEDVNGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLRA GDVVSFSRSN GQDQQLYIGW KSRSGSDLEP GQVLRLFGVN ISPASSRNDV VGNKRSVNDT EMLSLVCSKK QRIFHAS // ID R0GRK8_9BRAS Unreviewed; 273 AA. AC R0GRK8; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA13843.1}; GN ORFNames=CARUB_v10026947mg {ECO:0000313|EMBL:EOA13843.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA13843.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA13843.1; -; Genomic_DNA. DR RefSeq; XP_006280945.1; XM_006280883.1. DR GeneID; 17877297; -. DR KEGG; crb:CARUB_v10026947mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 31458 MW; 07C0612F192BA119 CRC64; MAYEEARKLR LQENLKRFQD LGISQISKAL LTQIPKKTLQ RNPRPIDKAL FATAEPRRSS RVRTPISSYR DDVDVDTGPT LNLRRSRRNS SWDSYIARPK HECKFASYEE KVGALKAAEE FQSRLESPHP SFVKSMLRSH VYSCFWLGLP SGFCVDNFSE ETIEVVLEDE EGEEYEAVYI GKRTGLSGGW KRFALDHKLD DGDALLFELV EPKRFKIYVF RGNESANLTS KEKRVRARQS EEEDKDVEES GDEGDSSRAT KRLSSRLLRK RKA // ID R0GRU6_9BRAS Unreviewed; 262 AA. AC R0GRU6; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA15050.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10028409mg {ECO:0000313|EMBL:EOA15050.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA15050.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA15050.1; -; Genomic_DNA. DR RefSeq; XP_006282152.1; XM_006282090.1. DR GeneID; 17875951; -. DR KEGG; crb:CARUB_v10028409mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 81 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 81 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA15050.1}. SQ SEQUENCE 262 AA; 29911 MW; FAA71443567BF216 CRC64; VLPISFNCCL PNPLPKTVTI RSTYGKIWNM VLRKCGGEVE RFVLVNGWKK IVKDEDLNGG DLLAFEFDGS RCFNFSIYEH ETMCKRVKRS SEQNLESDGE EETRTSNDVI VLHDDDTDDS DSDYHHASVE DDDDAEDEDV EPEPEDDAEN EHDDDVEDED KDDHRNPQFT VTLNPNRKSQ LHIPAHVIRD FDLTFPERIT VVDKLGALEK EIKIQVNGCI FVKGFGSVFR RNKVKTTDQM ICEVKRTGAN VVHTIKVNVI RG // ID R0GS24_9BRAS Unreviewed; 353 AA. AC R0GS24; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA15140.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10028515mg {ECO:0000313|EMBL:EOA15140.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA15140.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA15140.1; -; Genomic_DNA. DR RefSeq; XP_006282242.1; XM_006282180.1. DR GeneID; 17877370; -. DR KEGG; crb:CARUB_v10028515mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA15140.1}. SQ SEQUENCE 353 AA; 40950 MW; 872A98DACD20BB8F CRC64; NSVDDRLPKF FKVYLPDESG DDLELPISFN TFLPSSLPKN VIVRSICGNI WKMAFRKCCG DIERLVMVHG WKKIVKNVGL KGGEFLEFEF DGSRCFNFCI FGHETCKKLR SSEQIKEIEH VSDGEDDKCS DDDITVLNDG VIDDQYYGDE DRSSENIIVL DEEISDVQDC NEEDTYSEDT TVLDYADNDD TNDVQDYGEE DTSGEDIIVI EDDDDDQDYG DDNYAEEEDE RRRGLQTERK EKSSSGEHDR QYLDNHMNPF FTVNKKNMQR ENLRIPTKVI ANNGLHFSEF INLIDPLEQK FGKLKRRIEG QRIRRFGSII RRNNVKLTDK VICELEKEMD GLVREFKVHV IRG // ID R0GSG5_9BRAS Unreviewed; 1204 AA. AC R0GSG5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10000065mg {ECO:0000313|EMBL:EOA19819.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA19819.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA19819.1; -; Genomic_DNA. DR RefSeq; XP_006286921.1; XM_006286859.1. DR GeneID; 17884034; -. DR KEGG; crb:CARUB_v10000065mg; -. DR KO; K14486; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1077 1170 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 541 568 {ECO:0000256|SAM:Coils}. FT COILED 573 607 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1204 AA; 133890 MW; D0D64DF725F581F9 CRC64; MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRYINLN VPMLFRYLFV KMLTSFHFQL RDGKAQLLLG IRRANRQQPA LSSSVISSDS MHIGVLAAAA HANANNSPFT IFYNPRAAPA EFVVPLAKYT KAMYAQVSLG MRFRMIFETE ECGVRRYMGT VTGISDLDPV RWKNSQWRNL QIGWDESAAG DRPSRVSVWD IEPVLTPFYI CPPPFFRPRF GGQPGMPDDD TDMESALKRA MPWLDNSSEM KDASSTIFPG LSLVQWMNMQ QQQQNGQLPS AAAQPGFFPS MLSPTTALHN NLGGTDDPSK LLSFQMPQGG VSSSNLQFNK PNVQSPMSQL PQPSTTLSQQ QQLQQLLHSS LNQQQQQSQS QQQQQQQLLQ QQQQLQSQQH SNNNQSQSQQ QQQQQQQQHL QQQQQQQQQQ LLQQQHQQPL QQQTQQQQQR TQSLQSHSRS QPQPQPQPQP QPHKLQQLQL PQNQLYNGQQ AAQQLQAQQH LQPQLVSGSM ASSAITPPSS SHNQSFQQQQ QSKKLQQAHH HLGASTCQSS VIETSKSSSN LMSVPPQETQ FQRQVEQQQP PGLSGQNQQT LLQQKAHQAQ AQQIFQQSLL EQPHLQFQLL QRLQQQQQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPALSQ GHQFPSSCIN NGLSTLQPPQ MLVSRPQEKQ HPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRTQSGPAIL IPDAAIDMSS NLVQDLYSKS DMRLKQELVG QQKSKASLTD HHLEASASGT SYGLDGGDNN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTTDI GTEMSTSAVR TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR // ID R0GSI3_9BRAS Unreviewed; 338 AA. AC R0GSI3; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA38887.1}; GN ORFNames=CARUB_v10011257mg {ECO:0000313|EMBL:EOA38887.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA38887.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA38887.1; -; Genomic_DNA. DR RefSeq; XP_006305989.1; XM_006305927.1. DR GeneID; 17899587; -. DR KEGG; crb:CARUB_v10011257mg; -. DR KO; K09287; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 84 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 84 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 38708 MW; 28DCD32C8B8280E5 CRC64; MRLSDEPEQA LVVASAIKTV AVSGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSAAE AATAYDSASI KLRRFDANAH RNFPLSDITV HEPDFQDCYE VESVLNMIRD GSYQHKFRDF LRIRSQIVAS INIVDGSKQV RGEVDQESDK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA VKYMPSISDD QNEKEEGEIG GAVEDLEIVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNSF VKERNLKEKD VIIFYTCDVP NNVKTLEGQS NNFLMIDVHY FSDNGSVVPE KVNMTAHGSS EERRKTENFV SSKLEDKVTK TEENKGSFML FGVKIQCS // ID R0GU01_9BRAS Unreviewed; 320 AA. AC R0GU01; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA14648.1}; GN ORFNames=CARUB_v10027909mg {ECO:0000313|EMBL:EOA14648.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA14648.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA14648.1; -; Genomic_DNA. DR RefSeq; XP_006281750.1; XM_006281688.1. DR GeneID; 17875495; -. DR KEGG; crb:CARUB_v10027909mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36609 MW; B4A3DD803928F4EB CRC64; MWFSICEGKY LEDCLPKFFK VYLPDDSGDD LEIPISFTRF LPEPFPETVT VRSISGSLWT LQFRKCSGEV ERFVLVDGWK MIVKDEDLKG GDFLGFEFDG SQLFNFCIYE RETMCKRLRH CSEQSEELIV ESDIEEGTQD SDDDDVSALD DDSEDSDYNY VEDYDSDAAL EEEDNDGDET DIYVVNDAAT EENDVDVEAF KLGDHASEDD RNHLDDPENP SFTLRLNPKK KSQLLIPARV INDYGLHFPE SITLVDPLVK KFGTLEKLIK IQTNGSVFVK GFGSIIRRNK VKTTDKMICE MEKTGDNNMV QTMKIHIIRG // ID R0GU12_9BRAS Unreviewed; 119 AA. AC R0GU12; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA39422.1}; GN ORFNames=CARUB_v10012547mg {ECO:0000313|EMBL:EOA39422.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA39422.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA39422.1; -; Genomic_DNA. DR RefSeq; XP_006306524.1; XM_006306462.1. DR GeneID; 17900120; -. DR KEGG; crb:CARUB_v10012547mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 98 119 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 119 AA; 14011 MW; 81C9B94EC1A3A20A CRC64; MVAIPLGFNE YFPDPLPITV DLLDYSGRSW TVRMKKIGEN VFLTLGWENF VKDNNLEDGK YLNFIYDCDR TFYVIIFAHD MCSEFRGFPQ VIVDVDDYET CEDEDEDVEE AQQQKENNK // ID R0GUD3_9BRAS Unreviewed; 371 AA. AC R0GUD3; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA14803.1}; GN ORFNames=CARUB_v10028109mg {ECO:0000313|EMBL:EOA14803.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA14803.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870812; EOA14803.1; -; Genomic_DNA. DR RefSeq; XP_006281905.1; XM_006281843.1. DR GeneID; 17875398; -. DR KEGG; crb:CARUB_v10028109mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 371 AA; 43240 MW; FB98FA14331E02E0 CRC64; MVETGKDLEF FKVFLPEFSS HELVIPPAFI DLLVGKPLPK EAFLLDEIGR LWRVEIKTED TEERFCVSFQ KGWECFAKDQ SLEFGDFLVF SYDGGSRFSV TIFAKDGTKK DVGVVATTER SRVSLEKDPV HIFTKPERRK DCKRKREHDS VLDKPEYVST SKTKPGHREK IQRTTVNRAG VKWFNLNHVF VRCCYNVDPC DISWSSDSED GFEESVYKPK NPHFLRNITC SSFHKLEIPI TFLRSNGIEL EEEIELCDED GKKWPLKVEN HVRGLRFSCE TWSCFSKGHK LMKNHKFLLE FVASSGRCKE IQVRVVKEVI CVYSPEKSTK RDGFRIIKVY LSSFIFYTHQ PSIFVFEEYR SSLKKEAITC R // ID R0GUD5_9BRAS Unreviewed; 1052 AA. AC R0GUD5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10008159mg {ECO:0000313|EMBL:EOA39542.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA39542.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA39542.1; -; Genomic_DNA. DR RefSeq; XP_006306644.1; XM_006306582.1. DR GeneID; 17898551; -. DR KEGG; crb:CARUB_v10008159mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 924 1017 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1052 AA; 116460 MW; AC1902EADA73AE1A CRC64; MKAPSNGFLP NSNEGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKQTDFIP NYPNLPSKLI CLLHSVTLHA DTETDEVYAQ MTLQPVNKYD REALLASDMG LKLNRQPTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IVAKDLHDTT WTFRHIYRGQ PKRHLLTTGW SVFVSTKRLF AGDSVLFVRD EKSQLMLGIR RANRQTPTLS SSVISSDSMH IGILAAAAHA NANSSPFTIF FNPRASPSEF VVPLAKYNKA LYAQVSLGMR FRMMFETEDC GVRRYMGTVT GISDLDPVRW KGSQWRNLQV GWDESTAGDR PSRVSIWEIE PVITPFYICP PPFFRPKYPR QPGMPDDELD MENAFKRAMP WMGEEFGMKD AQSSMFPGLS LVQWMSMQQN NPLSGSATPQ LPSALSSYNL PNNFASNDPS KLLNFQSPNL SSANSQFNKL NTLNHISQQM QAQPAMVKSQ QQQQQLQMSH QQLQQQGIYN TGSDVSAVAN QVSCQNPHQS TTQSQLQQQS MLPNGVKMTH QNIHSGNKGS SQMTSFAQEL QFQQQLELHN SSQSLRNQQE QSSLHSLQQS LSQNPQQLQM QQQSPKPSPS QQLQLQLLQK LQQQQQQQSI PPVTSSLQPQ FSALQQPQSH QLQQLLSSQN QQPLAHGNNS FSASTFMQPP QIQVNHQQQG QMNNKPLVAA GRSHSGHTDG EAPSCSTSPS TNNTGHDNVS PTNFLSRNQQ GQAVSVSASE SVFERASNPV QELYAKTDNR INQGMVNLKS AGEQFKFKGA VTDQIDVSTA GTTYCPDVVG SAQQQQTFPL PSFGFDGDCQ SHQPRNNLAF ASNLEAVTSD ALYSQKDFQN LVPNYGNAPR DIETELSSAA ISSQSFGIPS IPFKSGCSNE VGGINDSGIM NGGGLWPNQT QRMRTYTKVQ KRGSVGRSID VTRYSGYDEL RHDLARMFGI EGQLEDPLTS DWKLVYTDHE NDILLVGDDP WEEFVNCVQN IKILSSAEVQ QMSLDGDLAA IPATNQACSE TDSGNAWKVH YEDTSAAASF NR // ID R0GUI5_9BRAS Unreviewed; 926 AA. AC R0GUI5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10008239mg {ECO:0000313|EMBL:EOA39612.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA39612.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA39612.1; -; Genomic_DNA. DR RefSeq; XP_006306714.1; XM_006306652.1. DR GeneID; 17900150; -. DR KEGG; crb:CARUB_v10008239mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 787 871 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 485 527 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 926 AA; 102143 MW; 43CCA5777E0A1164 CRC64; MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMSMSMSS PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSSG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ QLSQQQQQQI SQQQQQLSQQ QQQQQQQAYL GVPETHQPQS QAQSQSNNLL SQQQQQQVGD NHNPSASSPA VVSAMSQFGS ASQSNTSPLQ SMASLCHQQS FSDTNGGNNP ISPLHSLLSN FSQDESSQLL NLTRTNSAMT SSGWPSKRPA VDSSFQHSVP GNNTQSVMEQ LGQSHTSNVP PNAVSLPPFP GGRECSIEQE GSASDPHSHL LFGVNIDSSS LLMPNGMSNL RSIGIEGGDS TTLPFTSSNL NNDFSGNLAM TTPSSCIDES GFLQSSENLG SENPQSNTFV KVYKSGSFGR SLDISKFSSY HELRSELARM FGLEGQLEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVSS VWCIKILSPQ EVQQMGKRGL ELLNSAPSSN NVDKLPSNGN CDDFGNRSDP RNLGNGIASV GGTFNY // ID R0GUJ7_9BRAS Unreviewed; 903 AA. AC R0GUJ7; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10008258mg {ECO:0000313|EMBL:EOA39627.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA39627.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA39627.1; -; Genomic_DNA. DR RefSeq; XP_006306729.1; XM_006306667.1. DR GeneID; 17896916; -. DR KEGG; crb:CARUB_v10008258mg; -. DR KO; K14486; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 794 878 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 903 AA; 99668 MW; D1D922D478AC2789 CRC64; MMASLACVDD KMKTNGLVNG GTTTTTTTTS QSSLLEEMKL LKDQSGTRKP VINSELWHAC AGPLVCLPQV GSLVYYFSQG HSEQVAVSTR RSATTQVPNY PNLPSQLMCQ VHNVTLHADK DSDEIYAQMS LQPVHSERDV FPVPDFGLLS RSKHPAEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY TAQPPTQELV VRDLHENTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK SQLMVGVRRA NRQQTALPSS VLSADSMHIG VLAAAAHATA NRTPFLIFYN PRACPAEFVI PLAKYRKAIC GSQLSVGMRF GMMFETEDSG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE WDEPGCNDKP TRVSPWDIET PESLFIFPSL TSGLKRQLHP SYFAGETEWG SLIKRPLIRV PDSANGIMPY ASFPNMASEQ LMKMMMRPHN NQNVPSFMSE MQQNVIMGHG GLLGDMKMQQ PMMMNQKSEM VQPESKLTVN PSASNTSCQE QNLSQSMSAP AKPVNSTLSG CSSGKAQNGL EQSIEQVSQV TTATVGNEEK VNQLIQKTGA LSPIQADPCL DMSQQIYPPQ SDPINGFSFL ETEELTSQVS SFQSLAGSYK QPFMLSSQDS SAVVLPDSTN SPLFHDVWDN QLNGLKFDQF SPLMQQDLYA SQTMCMSNST NSNILDPPLS NTVLDDFCAI KETDFQNHPS SCLVGNNNSS FAQDVQSQIT SASFADSQAF SRQDFPDNSG GTGTSSSNVD FDDSSLLQNS KGSSWQKIAT PRVRTYTKVQ KTGSVGRSID VTSFKDYEEL KSAIECMFGL EGLLTHPQSS GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC IRILSPTEVQ QMSEEGMKLL NSAGINDLKT SVT // ID R0GUV9_9BRAS Unreviewed; 776 AA. AC R0GUV9; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16060.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10004192mg {ECO:0000313|EMBL:EOA16060.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16060.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16060.1; -; Genomic_DNA. DR RefSeq; XP_006283162.1; XM_006283100.1. DR GeneID; 17878035; -. DR KEGG; crb:CARUB_v10004192mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 37 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 358 459 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 358 459 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA16060.1}. SQ SEQUENCE 776 AA; 87081 MW; 9D9A37549442BB19 CRC64; ANNTTQYPPR PGAPLHYFSL CSPINFTHAF LGFFVMFSSS SMSSSSSSFS SRFCFNHECF EFKLDHCRPG WRLRTGDFVD LCDRCASLYE QGKFCDVFHQ KASGWRCCES CGKRIHCGCI VSASTYMLLD AGGIECLACA RKKVALGPNF PPSPSFLFQS PISEKFKDLS INWSSSTRSN QISFQPPSCL GPSVLQFDLR NRGDNNEFSQ PTSKERATAC SMEKKRGINN LIGKLMSENM QKYKVSPFPN GPNINVYHPC GTQLAFPVPI TTPIEKTGHS RLSGSHLWQT PNCSPLSHLH YDLNGGADSL LESKSRNVRT QLDAPGKYQV VPQYWPKVSN KNQQNQSKES ESIVTHLFEK ILSASDTGRV GRLVVPKKCA EAFFPQISHP EGVPLKIQDP MGKEWTFQFR FWPNNNSRIY VLEGVNPCIQ SLVLQTGDTV IFSRLDPERK LILGFRKAAI AQSTDQETNS TNNNRDTCTN KDAEPADMHS LSEVKKSTYI TKETPGVEFS SGKKNSSMMI TRGKRQKVEK GDHIELRLTW EEAQGFLLPP PNLTPSKVVI DDYEFEEYED APIIGKPIDD TGSTCTPDQK LVAQQQNEEA MEEAERLLMS PKTTTKHPRH RNGCSCIVCI QSPSGAGPKH DRRCSCAVCE AVKRRRHSLL LRREKKQMGK EDNAHKELEQ PNSDDELHQS ANNSENHECH TSPLKVQLDL NFKPEKDGES LPDYNKTTKK KTLHHDDTVK SSFNSPSSST AHSQINREEE ELKKNTEIAD TTTSSI // ID R0GVY9_9BRAS Unreviewed; 742 AA. AC R0GVY9; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10004139mg {ECO:0000313|EMBL:EOA15343.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA15343.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA15343.1; -; Genomic_DNA. DR RefSeq; XP_006282445.1; XM_006282383.1. DR GeneID; 17880409; -. DR KEGG; crb:CARUB_v10004139mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 146 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 636 720 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 742 AA; 82757 MW; 4D9C21CE40B59117 CRC64; MHADVETDEV YAQMTLQPLT PEEQKETFVP IELGIPSKQP SNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDYTLQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVIF IRNEKNQLFL GIRRATRPQT IVPSSVLSSD SMHIGLLAAA AHASATNSCF TVFFHPRASP SEFVIQLSKY IKAVFHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD TVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHAGTSS LPDGRGELGS GLTWLRGGGG DQQGLLPLNY PSVGLFPWMQ QRLDLTQMGT DNNQQYQAML AAGLQNIGGG DPLRQQFVQL QEPHHQYVQQ SASHNSDLML QQQQQQQQQQ ASRHAMHAQT QVMSENIPQQ NMRQEVSNHP TGQQLQQPDQ NAYLNAFKMQ NGHLQQWQHQ EMASPSFMKS DFTDSSNKFA TSATPMQQNA ASPASNDGSN LLNFSITGQS VLPEQLTTEG WSPKASNTFS EPLSLPQAYP GKSLALEPGN PNLNPQNPSL FGVDPDSGLF LPSTVPRFAS SSGDAEASPM SLTDSGFQNS LYGCMQDTTH ELLHGAGQIN PSNQTKNFVK VYKSGSVGRS LDISRFSSYH ELREELGKMF AIEGLLEDPL RSGWQLVFVD KENDILLLGD DPWESFVNNV WYIKILSPED VQQMGDQGEG SAGSFPQNPT HL // ID R0GW33_9BRAS Unreviewed; 496 AA. AC R0GW33; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16495.1}; GN ORFNames=CARUB_v10004653mg {ECO:0000313|EMBL:EOA16495.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16495.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16495.1; -; Genomic_DNA. DR RefSeq; XP_006283597.1; XM_006283535.1. DR GeneID; 17878508; -. DR KEGG; crb:CARUB_v10004653mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 71 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 365 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 71 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 449 483 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 496 AA; 55614 MW; 64FD791C34C740E7 CRC64; MTKHFKGKIQ STKLKLTSVA SDRVWEVQLD GRRFAGGWKN FSVFHSVRGD DVLSFRHDGG MAFHVTPFGR SFSQIQLISS STSDDEHNVF DAHDDDKDDD VDLGDDDNPV SEEDLCLKKT SSKKRARTET ESSEETYLIA HVTPSSLKRD NMCLVSKFAR SNGLGGRECY IDLKDEHGKS WTLLLRHNKS TGQAFMRGGW KLFCRSNGIK AGSSCRFKLV QSGTKPVLQL CPNTSSSKAN EKENVSESEV DEIESEHCSE TVPMHQNKIL TLDLKPYTLR TCQFRVPASL TRENGILEAG EVTIVNKDGE EWKSYLVNVK GRDQFYIRGC KAFFVANGIK NVGDPFTLEV IRGGLSPILK ICSKVKQASF DGHKTLERKP QMTVQAQHAE DETENRVQKK ARVCTEEGPS RCTRGLNKPS STDPENLQGK QPLQPCSISD HVKKVKQSIV ETLTDVRRFR SELENKEQNL EASLQEIDAL GEKMTGISKI FNISEV // ID R0GWN8_9BRAS Unreviewed; 274 AA. AC R0GWN8; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA21329.1}; GN ORFNames=CARUB_v10001689mg {ECO:0000313|EMBL:EOA21329.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA21329.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA21329.1; -; Genomic_DNA. DR RefSeq; XP_006288431.1; XM_006288369.1. DR GeneID; 17883684; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 274 AA; 30762 MW; 912745B61C2BE4C0 CRC64; MSVNHYSTDH HHTLLWQQQH HTTDASETAT TTAAWLNDDL KESLFEKSLT PSDVGKLNRL VIPKQHAEKY FPLNAVADNS SSSEKGMLLS FEDETGKSWR FRYSYWNSSQ SYVLTKGWSR FVKDKQLDPG DVVFFQRHRS DLRRLFIGWR RRGQGSSSAV NTSSMAAPSY RQIHHSSTNY SNPPSHSEYS HYGAAVATAG ETHSTPSSSV VAGSSRTLRL FGVNLECQMD DNDGDDSAAA AAAAVESPDG YYGQNMYYYY PHPHNMNIAF TGER // ID R0GY89_9BRAS Unreviewed; 744 AA. AC R0GY89; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10004220mg {ECO:0000313|EMBL:EOA16088.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16088.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16088.1; -; Genomic_DNA. DR RefSeq; XP_006283190.1; XM_006283128.1. DR GeneID; 17880728; -. DR KEGG; crb:CARUB_v10004220mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 194 296 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 658 738 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 194 296 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 744 AA; 82616 MW; D9AAF3F79357412B CRC64; MAEEPKAVSF IYTNSFFPIF LCAKVKKLPY PILKQQNQLR NLQILTKPRL VFFLNLRSFV QICHCFSKTG VKKKMINVMN PLKGGSEKGL DPQLWHACAG GMVRMPPMNS KVFYFPQGHA ENAYDCVDFG NMPIHPMVLC RVLAIKYMAD AESDEVFAKL RLIPLKEDDY VDHEYTDGDD SNGFESNSEK TPSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYNAEPP VQTILAKDVH GDVWKFRHIY RGTPRRHLLT TGWSNFVNQK KLVAGDSIVF MRAENGDLCV GIRRAKRGGI GNGPEYSAGW NPIGGSCGYS SLLREDESNT LRRSNCSLAD RKGKVTAESV IEAATLAISG RPFEVVYYPR ASTSEFCVKA LDARAAMRIP WCSGMRFKMA FETEDSSRIS WFMGTVSAVN VSDPIRWPNS PWRLLQVAWD EPDLLQNVKR VNPWLVELVS NVHPIPLTSF SPPRKKMRLP QHPDYNNLIN SIPIPSFPSN PLIRSSPLSS VLDNVPVGLQ GARHNAHQYY GLSSSDLHHY YLNRPPPPPP SSLPLSPSLG LRNIDSKNEK GFCFLTMGTT PCNDTASKKS HIVLFGKLIL PEEQLSEKGS TDTANVEKTQ ISSGGSNQNN GIAGRDLSSS DEGSPCSKKV HDASGLETGH CKVFMESDEV GRTLDLSVLG SYDELSRKLS DMFGIKKSEM LSSVLYKDAS GAIKYPGNEP FSEFLKTARR LTILTEQGSE SVVI // ID R0GZI5_9BRAS Unreviewed; 483 AA. AC R0GZI5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA16543.1}; GN ORFNames=CARUB_v10004702mg {ECO:0000313|EMBL:EOA16543.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA16543.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA16543.1; -; Genomic_DNA. DR RefSeq; XP_006283645.1; XM_006283583.1. DR GeneID; 17877875; -. DR KEGG; crb:CARUB_v10004702mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 261 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 261 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 483 AA; 54213 MW; 35336023C52A4F81 CRC64; MANASPSSPT NHHFFQPLLN GFKSYLKIPV KFFSEHIEGK HEGKTVKLRS DASERTWEVK MDGNRLTQGW TEFVEAHDLR IGDFVVFRHE GDMLFHVIAL GSSCCEIQYS QSSSHEEGEE SDDIEKTARP EKEVEENVQK ESDCFSKTVP RSSISSDMVT LPIDFARRNG FDKGMHEIVL MNEQGKSWES KVKSKIAGQV FIHGGWKGLC RENKLKVGDS CTFKLLQNAE RPVFQLCSCT EVKRKKKVRF AEDDQTGENR FVELTPTANS LKIGKQRLSL YFTSANMLNK LEKIILVDKD KVEWLMKLKV DRSDTSGAVF ICGGNDWKGF CSANEVGAGQ SLTLELIRGS GSPLLKFCSK KEQPPNEAED GIRKKARVQQ NGSLETCKRG PSRASKMGPE LEIRDKTAEK GEPSRASSGD QGKLQQKQPC SVIDQVAKVK ESVVDTLTCI RRFLAELEPM EQKLEDSLQA INKLGMISNL ISY // ID R0H0Z0_9BRAS Unreviewed; 295 AA. AC R0H0Z0; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA17118.1}; GN ORFNames=CARUB_v10005377mg {ECO:0000313|EMBL:EOA17118.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA17118.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA17118.1; -; Genomic_DNA. DR RefSeq; XP_006284220.1; XM_006284158.1. DR GeneID; 17880507; -. DR KEGG; crb:CARUB_v10005377mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 32 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 189 287 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 32 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 189 287 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 295 AA; 33424 MW; FAC99174BD2512D3 CRC64; MFVKDHSLKE NDLLVFKFHG LSEFEVLIFD GQTLCEKPTS YFVRKCGHAD KTKCTDFTAT SSRSPEILFN PVDVEATPNQ QRLISPVDNE LDDLIDIDVD IETMLTPHLV VSQTGCEQLE HFNSDIDTAY AQIPVISPAS TGRVSEEKYP LSGLKKMQGE INNDSLDHKA AGRKNKTLSL AQRVITPDGF LVVMKRSHVS KCFLTIPYKW CKKNNLLARQ EVVMQIDQMK WVMKFNLFGS RCSGGISTGW KKFVQDNNLC ESDVCVFEPM KSEKQPLHLY VYIFRVAEAE STNKG // ID R0H1D4_9BRAS Unreviewed; 135 AA. AC R0H1D4; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA23004.1}; GN ORFNames=CARUB_v10003750mg {ECO:0000313|EMBL:EOA23004.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA23004.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA23004.1; -; Genomic_DNA. DR RefSeq; XP_006290106.1; XM_006290044.1. DR GeneID; 17883047; -. DR KEGG; crb:CARUB_v10003750mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 135 AA; 15216 MW; 51F8E7336802F3A5 CRC64; MASGDVLPRF FSVFLSQYSS DSFLIPSSYY EHLPRRLPKN AILMGTGGKI WKVAMKSQRG QVYFEEGWAN FVADNELKDG EFLTFVFDGY NRYEVSIYGH GGCKETRAAI EVEDISDDET ESDNSGESFV SVTHV // ID R0H2N7_9BRAS Unreviewed; 347 AA. AC R0H2N7; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA18920.1}; GN ORFNames=CARUB_v10007553mg {ECO:0000313|EMBL:EOA18920.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA18920.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870811; EOA18920.1; -; Genomic_DNA. DR RefSeq; XP_006286022.1; XM_006285960.1. DR GeneID; 17878425; -. DR KEGG; crb:CARUB_v10007553mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 123 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 237 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 123 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 237 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 39747 MW; C220306D9FB193C9 CRC64; MADPVLQSPE NPHFFKVLLP GFDSNLNIPM KFFSAYIEGR YEGKTVELES DASEKSWKVE MEGRRLTFGW KEFASSHDLR IGDVIIFRHQ GALLFHVACF GPSCCEIQYR QSCNDDDHLY DDQENLSKLS SVHGIHILFF PKKFATSGAL IKGSNNIVLM NEVAKKWRLI LKFRESSRTF YMRDGWRSFC HENGLKPGDA VTFELESNNL KTPLLRFSTA EFTSVSTKDC NKLGKINKSG DSQKVSSSSS VTHLPKNFVK VNRMENLARR KITLLDKHGK DWAVTLVRER RNTQTRLGFG LKDFFKANGT KANESLVFEL VWEDKTTLPL LRFCSNAKTY SKLRPSY // ID R0H589_9BRAS Unreviewed; 308 AA. AC R0H589; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA24439.1}; GN ORFNames=CARUB_v10017696mg {ECO:0000313|EMBL:EOA24439.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA24439.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870809; EOA24439.1; -; Genomic_DNA. DR RefSeq; XP_006291541.1; XM_006291479.1. DR GeneID; 17884933; -. DR KEGG; crb:CARUB_v10017696mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 131 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 131 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 35052 MW; 7F3495CDB256B4EF CRC64; MNIQEEEKPI NEEASNSSME REHMFDKVVT PSDVGKLNRL VIPKQHAERH FPLDNSTSND SNKGLLLNFE DRSGNSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRDSGNK DKLYIDWRRR PKIPDHHHHH QASHHPFAGA IFPRFYTYSQ YPQMPTNYES HNLYHRFHQR DLGIGYYVRS MERSHPTAVI ESVPVMMQRR AQVASRGEKR LRLFGVDMEC GSGGGGGSVN NSTEEESSSS GGSMPRGGVS MVGAGSLLQL RLVSSDDESL VAMEAASLED HHFFTKKGKS SLSFDLET // ID R0H8Z4_9BRAS Unreviewed; 681 AA. AC R0H8Z4; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 33. DE RecName: Full=Methionine aminopeptidase {ECO:0000256|RuleBase:RU003653}; DE EC=3.4.11.18 {ECO:0000256|RuleBase:RU003653}; GN ORFNames=CARUB_v10019207mg {ECO:0000313|EMBL:EOA25834.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA25834.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Removes the N-terminal methionine from nascent proteins. CC The N-terminal methionine is often cleaved when the second residue CC in the primary sequence is small and uncharged (Met-Ala-, Cys, CC Gly, Pro, Ser, Thr, or Val). {ECO:0000256|RuleBase:RU003653}. CC -!- CATALYTIC ACTIVITY: Release of N-terminal amino acids, CC preferentially methionine, from peptides and arylamides. CC {ECO:0000256|HAMAP-Rule:MF_03174, ECO:0000256|RuleBase:RU003653}. CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000256|HAMAP-Rule:MF_03174, CC ECO:0000256|RuleBase:RU003653}; CC Note=Binds 2 divalent metal cations per subunit. Has a high- CC affinity and a low affinity metal-binding site. The true nature of CC the physiological cofactor is under debate. The enzyme is active CC with cobalt, zinc, manganese or divalent iron ions. Most likely, CC methionine aminopeptidases function as mononuclear Fe(2+)- CC metalloproteases under physiological conditions, and the CC catalytically relevant metal-binding site has been assigned to the CC histidine-containing high-affinity site. {ECO:0000256|HAMAP- CC Rule:MF_03174, ECO:0000256|RuleBase:RU003653}; CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- SIMILARITY: Belongs to the peptidase M24A family. Methionine CC aminopeptidase type 1 subfamily. {ECO:0000256|HAMAP- CC Rule:MF_03174}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870809; EOA25834.1; -; Genomic_DNA. DR RefSeq; XP_006292936.1; XM_006292874.1. DR GeneID; 17885608; -. DR KEGG; crb:CARUB_v10019207mg; -. DR KO; K01265; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070006; F:metalloaminopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0070084; P:protein initiator methionine removal; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd01086; MetAP1; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR HAMAP; MF_01974; MetAP_1; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000994; Pept_M24. DR InterPro; IPR001714; Pept_M24_MAP. DR InterPro; IPR002467; Pept_M24A_MAP1. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00557; Peptidase_M24; 1. DR PRINTS; PR00599; MAPEPTIDASE. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR SUPFAM; SSF55920; SSF55920; 1. DR TIGRFAMs; TIGR00500; met_pdase_I; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Aminopeptidase {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Protease {ECO:0000256|HAMAP-Rule:MF_03174, KW ECO:0000256|RuleBase:RU003653}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 60 115 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 184 291 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 60 115 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 184 291 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT METAL 527 527 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 538 538 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 538 538 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 600 600 Divalent metal cation 2; catalytic; via FT tele nitrogen. {ECO:0000256|HAMAP- FT Rule:MF_03174}. FT METAL 634 634 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 665 665 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT METAL 665 665 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_03174}. FT BINDING 510 510 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_03174}. FT BINDING 607 607 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_03174}. SQ SEQUENCE 681 AA; 75675 MW; 1DE11F973E2301BE CRC64; MSSVDESSTT TDSIHTPVKI PAKKSPSPAG LLYRMGSGTS VVLDSENGLE AESRKLPSSR FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAARAYDV AAHRFRGRDA VTNFKEAKVD DDEEVEFLND HSKSEIVDML RKHTYNEELE QRKRKRYGNG NKTTGFGSVT VAVITGFKTS GLLFEKTVTP SDVGKLNRLV IPKHQAEKHF PLSGGDESNV SVKGMLLNFE DVNGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKRLCAGDS ICFKRSNGQD HKLYIGWKSK SGSGSGSDQD TGRIVRLFGV DICFSDTAGL VVKEEAEMSM SLKCNNHKKQ RKIIPSRSLF NGSKLTPSKY FAGAPTNFSS FPLSGKKKSY SLRIKRIQQL QNSLEDRINP PLVCGRVTPR LCVPDHILKP SYVESSEVPR ISSEIQIPDS IGIVKMKKAC ELAARVLDYA GTLVRPFVTT DEIDKAVHQM VIESGAYPSP LGYGGFPKSV CTSVNECMFH GIPDSRPLQN GDIINIDVAV YLDGYHGDTS KTFLCGDVDE SLIQLVKVTE ECLEKGISVC KDGANFKQIG KIISEHAAKY GYNMERFIGH GVGTVLHSEP LIYLHSNYDY ELEYMIEGQT FTLEPILTIG TTEFVTWPDK WTIVTADGGP AAQFEHTILI TTTGSEILTI S // ID R0H9C9_9BRAS Unreviewed; 321 AA. AC R0H9C9; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA25964.1}; GN ORFNames=CARUB_v10019353mg {ECO:0000313|EMBL:EOA25964.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA25964.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870809; EOA25964.1; -; Genomic_DNA. DR RefSeq; XP_006293066.1; XM_006293004.1. DR GeneID; 17884764; -. DR KEGG; crb:CARUB_v10019353mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 36080 MW; 3583A181E58C5465 CRC64; MMADENVETK ASTLIASVGH QGHGFGSGSG GHHGLSASVP LLGVNSKKRR MPRQRRSSSS FNLLSLPPPM PLSPHVPTPL SARKIDPRKL RFLFQKELKN SDVSSLRRMI LPKKAAEAHL PALECKEGIP IRMEDLDGLH VWTFKYRYWP NNNSRMYVLE NTGDFVNAHG LQLGDFIMVY LDLDSNNYVI QARKASEEEE EEEDVTIIEE DDVYTNLTKI ENTVVNDLLI QDFNHHNDNS SNNNSNNNIN NNKCSYYYPV IDDITTNTAS FVYDTTTLTS NDSPLDFLGG HTTTTTNTYY SKFGSFEGLG SVENISLDDF Y // ID R0HB22_9BRAS Unreviewed; 808 AA. AC R0HB22; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA26594.1}; GN ORFNames=CARUB_v10022654mg {ECO:0000313|EMBL:EOA26594.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26594.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA26594.1; -; Genomic_DNA. DR RefSeq; XP_006293696.1; XM_006293634.1. DR GeneID; 17888144; -. DR KEGG; crb:CARUB_v10022654mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 306 407 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 558 608 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 306 407 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 722 749 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 808 AA; 88597 MW; 1902B38B713D31D0 CRC64; MFEVKMGSKM CMNASCGTTS SVEWKKGWPL RSGLLADLCQ RCGSVYESST FCEKFHKDQS GWRECYLCNK KLHCGCIASK VMIELMDYGG VGCSTCACRQ KLNFNNSGEN PGVFSRLPMK SLADRQYVNG ESGMNIEGGR NEADLFSQPQ RCESQPLVMG GDKREEFIPH RGFGNLMSSE NTNTGFRLDA VEMHESSPAQ PSLNMGLSVL PYSPSFSTEG IEGKKHIGAS QSNMVHCSAS NILQKPSKPA MSTPPVASKS AQARIGRPPV EGRGKGHLLP RYWPKYTDKE VQQISGNLNL NIVPLFEKTL SASDAGRIGR LVLPKACAEA YFPPISQSEG IPLKIQDVKG KEWTFQFRYW PNNNSRMYVL EGVTPCIQSM MLQAGDTVTF SRVDPGGKLI MGSRKAANGG DIQSCGLTNG TSTEDTSSSG VTENPPSING SSCPSLIPKE LNGMPENLSS PYGGNGIKNE NNGVRVADDP TRVKEKKRTR TIGTKTKRLL LHSEESMELR ITWEEAQDLF RPSPSAKPTI VVIEGHEFEE FDEPPVCGKK TIVTTKPSGE QERWAACDDC SKWRRLPVNA LLSLKWTCID NVWDVSRCSC SAPEESLKEL ENALKAGREY KKRRTGESQA AKSEQEPSGL DALASAAVLG DTMGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPNC ACTVCSTVKR RFKTLMMRRK KKQLERDGPA AEEKEKKDME QAESDKNKAE EEVNTARIDL NSDPYNKEDV EAVAGEKDES RKRKIGQSSG VAQEGDVVGV KVLEGEAEKI GEDPKGSS // ID R0HBF0_9BRAS Unreviewed; 606 AA. AC R0HBF0; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10022841mg {ECO:0000313|EMBL:EOA26754.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26754.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA26754.1; -; Genomic_DNA. DR RefSeq; XP_006293856.1; XM_006293794.1. DR GeneID; 17889120; -. DR KEGG; crb:CARUB_v10022841mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 495 587 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 125 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 606 AA; 67377 MW; 716F27BA53E5DB35 CRC64; MANVVDADFG RSGSNDGQLY TELWKACAGP LVEVPRSGER VFYFPQGHME QLVASSNQGV VDQEIPVFNL PPKILCRVLS VMLKAEHETD EVYAQITLHP EEDQSEPTSL DPPLVEPAKP KVDSFVKILT ASDTSTHGGF SVLRKHATEC LPLLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KKLVAGDAFV FLRGETGDLR VGVRHLARQQ STMPASVISS QSMRLGVLAT ASHAVNTKSI FIVLYKPRIS QFIISVNKFM VAMKNGFSFG MRFRMRFEGE ESPERIFTGT IIGSGDLSSQ WPASKWRSLQ IQWDESSSIQ RPNKVSPWEI EPLSPSALTP TPTHPQSKSK RSRPIDSSVS EITGSPVASN FLSSFSQSNE SNPSGKLLFH DPATERNVDK TVLSSGLQGK NSEAPGTSCC RLFGFDLTSK PASAPVPPDR QLISVNSNNS DSTTKCQDPN SSNSTREQKQ QTSTRSRTKV QMQGTAVGRA VDLTLLRSYD ELIKELEKMF EIEGELNPKD KWAVVFTDDE DDIMLVGDDP WDEFCKMAKK LFIYSSDEVK KMSSKSLLDD EATIVNLESE QRTVQD // ID R0HCB3_9BRAS Unreviewed; 128 AA. AC R0HCB3; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA22675.1}; GN ORFNames=CARUB_v10003379mg {ECO:0000313|EMBL:EOA22675.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA22675.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA22675.1; -; Genomic_DNA. DR RefSeq; XP_006289777.1; XM_006289715.1. DR GeneID; 17883866; -. DR KEGG; crb:CARUB_v10003379mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 117 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 128 AA; 14999 MW; A05C18A46740FDCB CRC64; MEDFRIDGDM IISKTLTPTD VDQHGRLLLP RSQILLIFKK MKDITKKSLL KGIQLEVLDI TQNNSYSVFL KSRNSSKDYF LGMGWTKLRK SLGLKKGDNI KLYWDYLNYK FIILNFEYSL IPEFPLKG // ID R0HCB8_9BRAS Unreviewed; 257 AA. AC R0HCB8; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA21328.1}; GN ORFNames=CARUB_v10001689mg {ECO:0000313|EMBL:EOA21328.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA21328.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA21328.1; -; Genomic_DNA. DR RefSeq; XP_006288430.1; XM_006288368.1. DR GeneID; 17883684; -. DR KEGG; crb:CARUB_v10001689mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 257 AA; 28601 MW; 09702C805D037465 CRC64; MSVNHYSTDH HHTLLWQQQH HTTDASETAT TTAAWLNDDL KESLFEKSLT PSDVGKLNRL VIPKQHAEKY FPLNAVADNS SSSEKGMLLS FEDETGKSWR FRYSYWNSSQ SYVLTKGWSR FVKDKQLDPG DVVFFQRHRS DLRRLFIGWR RRGQGSSSAV NTSSMAAPSY RQIHHSSTNY SNPPSHSEYS HYGAAVATAG ETHSTPSSSV VAGSSRTLRL FGVNLECQMD DNDGDDSAAA AAAAVESPDG YYGQNII // ID R0HEH1_9BRAS Unreviewed; 101 AA. AC R0HEH1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA22173.1}; GN ORFNames=CARUB_v10002744mg {ECO:0000313|EMBL:EOA22173.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA22173.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA22173.1; -; Genomic_DNA. DR RefSeq; XP_006289275.1; XM_006289213.1. DR GeneID; 17883370; -. DR KEGG; crb:CARUB_v10002744mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 101 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 101 AA; 11601 MW; 55778B021A083737 CRC64; MNQDLMIEKT LTDSDLSSNS RLRLPKKKVE NIIKSTGVPV PRNGIQVEIV DGNKSYWVNL GQDVVGYFIG NGWQSLRDAR QLQKGNIIKL YWQKTKFIFS M // ID R0HES1_9BRAS Unreviewed; 101 AA. AC R0HES1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA22288.1}; GN ORFNames=CARUB_v10002886mg {ECO:0000313|EMBL:EOA22288.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA22288.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870810; EOA22288.1; -; Genomic_DNA. DR RefSeq; XP_006289390.1; XM_006289328.1. DR GeneID; 17884089; -. DR KEGG; crb:CARUB_v10002886mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 101 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 101 AA; 11540 MW; 90416DC6439B7311 CRC64; MDPNMMIEKK LTDSDVSNKA RLHLPKKKVE NIIRSTGVPI PRNGIQVEIL DNNNSYWVNF GVGGSGYFIG SGWVNLRDAK HLRTGDIIKL YWENTKFIFS M // ID R0HI61_9BRAS Unreviewed; 549 AA. AC R0HI61; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA29399.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10025688mg {ECO:0000313|EMBL:EOA29399.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA29399.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA29399.1; -; Genomic_DNA. DR RefSeq; XP_006296501.1; XM_006296439.1. DR GeneID; 17888454; -. DR KEGG; crb:CARUB_v10025688mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 124 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 450 546 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 124 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 450 546 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA29399.1}. SQ SEQUENCE 549 AA; 62289 MW; 8615E82BCAD356D5 CRC64; LGRRKKVRTN KSEFKAGSSS SDDNNSFFVL VTDANLKADS LNLPKDYTYS SVLNKTCHKI VLTDGSNNSW ELDLKFNQFS GCFYITRGWR HFCDENGKKA GNVFTFELTN RGETPLLTFS PSNSTLSYET SEGLDKFVTY IPADFLGKHG LDIETRMVTL LRKDGTRMLA TLSREYSTSN LGRMSLTRGW RQFVKASHLK EGEHITFECI WQNATPILKL TETKSNIPIK RSRKKYTRAS KKVSTVSTKP NVGKEPEKDK NMEEPIITAL LPPTEDSRVV TEPLMNDEKE PEKDKNMEEP ISALLPPTEN NRVVTEPNRN DGKEPKKDKN MEEPISPLLP PTENNRVVTE PNRNDGKESE KDKNMEEPRS PLKPPTENNR VVTESNRNDG KELEKDNNME EPRSPLQPPT ENNRVVTEPN RDDGKELEKD QNIEEPTSPL ISSLIQNRRV VVLPLVPADV KASTLWLPRK FMKDNGINKI GKIVMWGRNE VESWCGFLLS KDGMVAVGCG WENFCETNGV KIGESFSLEF IMRRADATPV LQFKPKSRS // ID R0HLE5_9BRAS Unreviewed; 533 AA. AC R0HLE5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10019454mg {ECO:0000313|EMBL:EOA26040.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26040.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870809; EOA26040.1; -; Genomic_DNA. DR RefSeq; XP_006293142.1; XM_006293080.1. DR GeneID; 17886112; -. DR KEGG; crb:CARUB_v10019454mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 433 514 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 533 AA; 60847 MW; 6EA416990EA4BEA3 CRC64; MDSCNVANVQ PDLSRTLDGS ESYMYEQLWK WCAGPLCHLP NLGDKVYYFP QGHIELVEAS TREELNQIQS NFNLHSKLEC RVIAVRLKKR KKKTDQVYAE ITLIPDATQV VIPTQNDSQY RPKVNSFLKI LTASDTSTHG GLSVPKRSAT KCLPPLDMGI SVPTQEIFTK DLHDSVWKFK HSFRGTPQRH LLTTGWSAFV TTKSLVVGVA FILLRGETGE LRVGIRRARH QQGNITSSLV STENMRHGVI ASALHAFNNQ CMFTVVFKPR SSQFIVKYDK FLDAVNNKFN VESRFTMRFE TEDFSEKVDN FSPHWKDSEW RSLQVRWDEL ASFPRPEKVS PWEIEHIPPS SNVPQSFLLK EQAFTTQVVL PSMTNEGGTS FRLFGVSLVV PSRKNESYQV SNTSKLSQEK KFGLTQTFKL PKMAKSKQFS STKSCTKVQL QGVTVGRALD LSVLNGYDQL IHELEKLFDL KGELRSRNQW EMVFIDHEGD IVLIGDVPWL EFCNMVKKIL ICSKEEIKKL KYERPISQTK PKA // ID R0HPM7_9BRAS Unreviewed; 281 AA. AC R0HPM7; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA25898.1}; GN ORFNames=CARUB_v10019277mg {ECO:0000313|EMBL:EOA25898.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA25898.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870809; EOA25898.1; -; Genomic_DNA. DR RefSeq; XP_006293000.1; XM_006292938.1. DR GeneID; 17886671; -. DR KEGG; crb:CARUB_v10019277mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 31702 MW; 324D8859DB151CE0 CRC64; MAEHDDDVLL PRFFKVFLSE SASESFAIPL SFMEHLADPL PNTAKLQGTG GRDWTVNMTK IRDGVYFTAG WSKFAQDHEL VDGEFLTFVY DGHRTFEVSV FGRLGCKETR AEVEAIAVDG SSSDSDGSSS DSEEERELSM DFYGDTSLGE DEEISQSLYP LEDEETESDS AVVEGNLDIE ALTNPHFSTT LKNRIYELLI PANVVKENKL TFGDSVKYID GEGTLVGLRG KWADDRICFK GWDRICRRNR LKKHQDTVEC ELLHDRNKVH SIRVHIMRGT T // ID R0HQ08_9BRAS Unreviewed; 326 AA. AC R0HQ08; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA31859.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10015086mg {ECO:0000313|EMBL:EOA31859.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA31859.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA31859.1; -; Genomic_DNA. DR RefSeq; XP_006298961.1; XM_006298899.1. DR GeneID; 17893338; -. DR KEGG; crb:CARUB_v10015086mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 158 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 228 326 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 158 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 228 326 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 326 326 {ECO:0000313|EMBL:EOA31859.1}. SQ SEQUENCE 326 AA; 37177 MW; 2A6EC0E3C20DD9ED CRC64; MPSSPVNPHF FRPLLPGFHT HLNIPMAFFL RHIQGTTNEG NGVVKLRSFV SDITWQVKMD GRRLTQGWQK FATSHDLRVG DIVVFRHDGD LLFHVTCFGP SCCEFQYDDD DVIQLSSDYS DSERNQNTAE AKSSSDDPHS CFVACVTESN LRKDILGEII LLNEHGIPWT LILSHKPDGE VYIRSGWRSF CITNRLRAND FLTLKLVQTG TTPVLQLCPS STASQYRFLT LTLKPYNFKK YKLCLPRTFV KTNGIEKARK ITLVNRYGIK RTTSLKPEDG YGRMRLGKEW REFCDVNGVN IGDSFELELI KEGEDTGSHL LKFCSK // ID R0HQH8_9BRAS Unreviewed; 105 AA. AC R0HQH8; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA31999.1}; GN ORFNames=CARUB_v10015240mg {ECO:0000313|EMBL:EOA31999.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA31999.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA31999.1; -; Genomic_DNA. DR RefSeq; XP_006299101.1; XM_006299039.1. DR GeneID; 17892393; -. DR KEGG; crb:CARUB_v10015240mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 105 AA; 11902 MW; 047A4F3FECE24B6A CRC64; MENVAASSPV NPHFFRPLLP GFHTHLNIPM AFFLRHIQGT TNEGNGVVKL RSFVSDITWQ VKMDGRRLTQ GWKKFATSHD LRVGDIVVFR HDGDLLFHVT CFGPS // ID R0HR36_9BRAS Unreviewed; 248 AA. AC R0HR36; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA27770.1}; GN ORFNames=CARUB_v10023925mg {ECO:0000313|EMBL:EOA27770.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA27770.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA27770.1; -; Genomic_DNA. DR RefSeq; XP_006294872.1; XM_006294810.1. DR GeneID; 17888519; -. DR KEGG; crb:CARUB_v10023925mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 144 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 248 AA; 28807 MW; 45AED47A77EC182F CRC64; MSITQYSSDF HYHSLMWQQQ QHHHHHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR ADGGRFFIGW RRRGDSSSSS DSYRHHQSNA SLQYHPHAGA QAVESPRANS KTLRLFGVNM ECQLDSEWSE PSTPDGSNTC TTNHDQFHFY PHQQHYPPPY YMDISFTGDV NRTRSPQG // ID R0HRK5_9BRAS Unreviewed; 597 AA. AC R0HRK5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA26613.1}; GN ORFNames=CARUB_v10022672mg {ECO:0000313|EMBL:EOA26613.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26613.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA26613.1; -; Genomic_DNA. DR RefSeq; XP_006293715.1; XM_006293653.1. DR GeneID; 17890131; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR003006; Ig/MHC_CS. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. DR PROSITE; PS00290; IG_MHC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 83 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 597 AA; 67628 MW; B74F46A0AEF34878 CRC64; MMFQVADHQD NNIEFQRNKK VKQNNHETES DYSCLVTHVT ASSQHTDALY LPQDLTSSNG LTRKCSKSPR QIFSSYSSSE KQFVTFRLAP VDGRHCRLRL PMQFTRENGI NKPGKIYLLG KDGSKWLANL LSESNRGRMT LGDGWKSFVK ANGLKTGESV TLRLYWEDTT PVLSLCPEVY NTETRVGEEC LDASEKESFP IEPSSKVEII KDDINKDKNT KDESSSWERE NHHMRCMDST SPSQNHILTL KITPDCLKHG RLRIPLQFMT ENSMNKPGEI TLLGKDGAKW LASLLLEKRG RMSLGKGWKE FAKANGLKTD DSITFELIWE NATPILKLLR IESSYGRRES GFSKESLTME PNRGNKTKKA DNNREESKMY PPRCRESTTT IQNQFMALTF TCNTISLGAH DPQTREAFIF RHEGDNMLHI SDLGHSCFGI RDVTAPSSKN DHDRIGNISM KMHPHLSQEA GFSSYDGDDH GNFEGPSKKV KKNNPETQED YSSDHSRFVT TSSLHANALS LAVKESLPIK PSNVRKISEY DNNKDENSKE ENNIEVSSSC EREKNHLRCI ASISPSQNRY VTLTITPDSL RQGRLVS // ID R0HTE7_9BRAS Unreviewed; 378 AA. AC R0HTE7; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA27328.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10023444mg {ECO:0000313|EMBL:EOA27328.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA27328.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA27328.1; -; Genomic_DNA. DR RefSeq; XP_006294430.1; XM_006294368.1. DR GeneID; 17890200; -. DR KEGG; crb:CARUB_v10023444mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 136 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 282 378 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 136 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 282 378 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 378 378 {ECO:0000313|EMBL:EOA27328.1}. SQ SEQUENCE 378 AA; 43606 MW; 6217BF6C8DEA9451 CRC64; MASKHFFKPL LPGFYSHLTI PIAFLLNIKG RNEQKTVELR SDASKITWKV KIDGERLTDG WKEFAVAHDL RIGDIVVFRQ ERDMAFHVTL LGPSCCEIQY VSCLEDHNNL RMIQRKKRVR KNPRREAESS SLDPSCFVAN ITPSTLLYDR LHFPRSFARE NGLDTRCGEI VLMNEKGRSW TVDLRGKSSC GSAYIKRGWR SFCHANGLSA GSFFTFRLIQ RGRTLVLRLF PKETEEEEVE VVCLSTEEES DKERSQDDSQ ECSKRKEKKI SKASSSGSQN RFVTLTLTRY NVSLSRLTLP IPFTKASGIR LAKEMSFLDK HGVKWSTRLR FEKERKRMRL VGGWKEFCNA NHVKIGESVL LELIWEKHKS SVLKFCSK // ID R0HU27_9BRAS Unreviewed; 124 AA. AC R0HU27; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA28920.1}; GN ORFNames=CARUB_v10025168mg {ECO:0000313|EMBL:EOA28920.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA28920.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA28920.1; -; Genomic_DNA. DR RefSeq; XP_006296022.1; XM_006295960.1. DR GeneID; 17889863; -. DR KEGG; crb:CARUB_v10025168mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 118 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 124 AA; 14324 MW; B2B48B5241DC34A5 CRC64; MDAGFDIDGD MIISKTLTRT DVDKHGRMHL PKSQVLSVLT KMKDVTEESL LNGIELEVLD TINNHSYSVI LKSRNISKEF VLGTGWSTLK YSLELKEGDN LKLYWDYLNY KFIILNFEYS LIPF // ID R0HUY2_9BRAS Unreviewed; 337 AA. AC R0HUY2; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA29225.1}; DE Flags: Fragment; GN ORFNames=CARUB_v10025498mg {ECO:0000313|EMBL:EOA29225.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA29225.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870808; EOA29225.1; -; Genomic_DNA. DR RefSeq; XP_006296327.1; XM_006296265.1. DR GeneID; 17889857; -. DR KEGG; crb:CARUB_v10025498mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 337 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 337 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 337 337 {ECO:0000313|EMBL:EOA29225.1}. SQ SEQUENCE 337 AA; 38260 MW; F079069DF0A87548 CRC64; MANQHFFKPL LPGFHSFLTI PVAFFLKNIG GRNEQMAAEL RSDVSKITWK VKIDGQRLTS GWKEFALAHD LRIGDILVFK LERDMSFHVT MLGPSCCQYV PSLHNQNNLG KIQSKKKEAT SSVDLSCFVA KVTTSNLRFD SLNLPLSFVR ANGLDKRCGE IILINEKGRS WTVDLKQKTS CEATYIKRGW RSFCQANGLR AGSFFTFKLI QRGRSLGLLR LSPREIKEED GLSEANVVKS TLIWKPSLSP SQNRFVTVTL TPYNLRESNL AKKMSLLDKH GVKWSTKMSF EVKRQRMRLK GGWKEFCNAN GVKIGESVIL ELVWEADRSS VLKFCSK // ID R0HYF1_9BRAS Unreviewed; 616 AA. AC R0HYF1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=CARUB_v10019991mg {ECO:0000313|EMBL:EOA34914.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA34914.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870806; EOA34914.1; -; Genomic_DNA. DR RefSeq; XP_006302016.1; XM_006301954.1. DR GeneID; 17896183; -. DR KEGG; crb:CARUB_v10019991mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT SIGNAL 1 19 {ECO:0000256|SAM:SignalP}. FT CHAIN 20 616 Auxin response factor. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004343280. FT DOMAIN 146 248 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 146 248 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EOA34914.1}. SQ SEQUENCE 616 AA; 67256 MW; 89DA4C53E253D8D7 CRC64; YLPLLLLLLL LLSLTSLQCN QTPMSPPSES AAGDILHRGV DPTIWRACAG ASVQIPQLYS RVYYFPQGHV EHCCASSPLS SSPPPSTSPV PCRISSIQLL ADPITDEVFA HLLLQPMSQD QFAPTNFSRF PAYEGDVDDN NKVTTFAKIL TPSDANNGGG FSVPRYCADS VFPPLDFLAD PPVQKLFITD IHGSVWDFRH IYRGTPRRHL LTTGWSKFVN SKKLIAGDSV VFMRKSADEM FIGVRRTPTS NHGGGTSYYG GDEYNGYYSQ INGALAKEDD GSAKKMFRRT GKGKLTPEAV SEAMNRAAQG LSFEVVYYPT AGWSDFVVRA EDVESSMSMF WTPGTRVKMA METEDSSRIT WFQGIVSSTY QETGPWRGSP WKQLQITWDE PEILQNVKRV NPWQVEIVAN ATQLHPTFPP AKRLKYPQTG GFLSGDDGEI LYPPQRGLSS AAAPDSSPFL NSYTTFPAGM QGARHYEFGS HNPTGFIGEN PPQLSTNNFF SPLPGLGKVS TEKNFGSPPS DNLSPNSNST NLSSGNDLVG NRVPNTAKAN SIKLFGKTIT VQEPSESGLA ESGLCEEDGS KESSDNTTQL SLTHGPRTRE DSRCTPTATQ SISAKV // ID R0I012_9BRAS Unreviewed; 272 AA. AC R0I012; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA31210.1}; GN ORFNames=CARUB_v10014376mg {ECO:0000313|EMBL:EOA31210.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA31210.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA31210.1; -; Genomic_DNA. DR RefSeq; XP_006298312.1; XM_006298250.1. DR GeneID; 17892338; -. DR KEGG; crb:CARUB_v10014376mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 152 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 152 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 272 AA; 30464 MW; 118F27FF51B31F34 CRC64; MSVNHYHHHN TLSLQQHQQH IHHQNDLSLA QRESLFEKSL TPSDVGKLNR LVIPKQHAEK YFALSNNNNN GGGGGGDDVA TTEKGMLLSF EDESGKCWKF RYSYWNSSQS YVLTKGWSRY VKDKHLDAGD VVFFQRHRFD LQRLFIGWRR RGEASSSPGA VSQEALAANT TAFWTPYRQV HASTTYPNIH HEYSHYGAAA DQAQSTPTVV AGSSRTVRLF GVNLECHGDA VEPPPRTDGG YSGQHIFYYS TPHPMDISFA GEALEQVGDG RG // ID R0I040_9BRAS Unreviewed; 262 AA. AC R0I040; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA31250.1}; GN ORFNames=CARUB_v10014420mg {ECO:0000313|EMBL:EOA31250.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA31250.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA31250.1; -; Genomic_DNA. DR RefSeq; XP_006298352.1; XM_006298290.1. DR GeneID; 17890973; -. DR KEGG; crb:CARUB_v10014420mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 262 AA; 30329 MW; D686C7B67F63DAB5 CRC64; MVESELSYEQ IRLKRVEENK KRMGELNLNK LAQSLRVSSS PKPSPSKTRT MRMPVDFSEV RRSSRAKGPP PSYKEFGLEP LERPRRSYQR RDLLNRVYAS DEARVYAVDR AEKLQSSLDP EFPSFVKPML QSHVTGGFWL GLPLRFCKTH LPKRDEWMTL VDEEDEEFVA KYLVEKNGLS GGWRGFSIDH QLVDGDAVVF HLITPTTFKV YIIRVNDDGN NDSDVNEEDE EDDIDINKKE KEHVSEARQL RSSGKRKRGG RK // ID R0I355_9BRAS Unreviewed; 341 AA. AC R0I355; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA32370.1}; GN ORFNames=CARUB_v10015637mg {ECO:0000313|EMBL:EOA32370.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA32370.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA32370.1; -; Genomic_DNA. DR RefSeq; XP_006299472.1; XM_006299410.1. DR GeneID; 17890868; -. DR KEGG; crb:CARUB_v10015637mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 39295 MW; F78EB8EE574731FD CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIYPSSLY PSTLPESTVQ ANKGYTGSAI QSLFSGSVKA EESMPTPKIP KKRGRKKKNA DPEEINSSAP RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVSEY V // ID R0I467_9BRAS Unreviewed; 722 AA. AC R0I467; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA32785.1}; GN ORFNames=CARUB_v10016094mg {ECO:0000313|EMBL:EOA32785.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA32785.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA32785.1; -; Genomic_DNA. DR RefSeq; XP_006299887.1; XM_006299825.1. DR GeneID; 17892100; -. DR KEGG; crb:CARUB_v10016094mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 573 675 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 573 675 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 722 AA; 79652 MW; E2A62A024F957D53 CRC64; MKSMHVAANA GDLAEDCGIL AGDGDEAILM DGMDEVGGEI WLDDHGGDHG HGDDDLIVHH DPSLFYGDLP TLPDFPCMSS SSSSSTSPAP VNAIVSSASS SSAASSSTSS AASWAILRSD GEDPAPNQNQ YGSGKCDESS GALQSTASME IPLDTSQGFG CGEGGGDCID MMETFGYMDL LDSNEFFDTS AIFSQDDDTP NPNLMDQTLE RQQQDQVVVP MMDNNSGGDM QMMNSSLEQD DDLATVFLEW LKNNKETVSA EDLRKVKIKK ATIESAARRL GGGKEAMKQL LKLILEWVQT NHLQRRRTTT ITNNNNNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPPQ QAFVSDPGFG YMPAPNYPQP PPEYLPLLES PQSWPPPPQS GPMPHQQFPM PPNSQYNQFG EPTGFTGYNM NPYQYPYIPP GQMRDQRLLR LCSSATKEAR KKRMARQRRF LSHHHRHNNN NSTNQQNQNQ VGETCTAAVA PQLNPVTTTT TGGTWMYWPN VPSVPPPQLP PPMETQLQTM DRASSAASAM PRQQVVPDRR QGWKPEKNLR FLLQKVLKQS DVGNLGRIVL PKKEAETHLP ELEARDGISL AMEDIGTSRV WNMRYRFWPN NKSRMYLLEN TGDFVKTNGL QEGDFIVIYS DVKCGKYLIR GVKVRQPTGQ KQEAPPSSAA AAKRQNKSQR NINNNSPSAN VVVASPTSQT VK // ID R0I4E5_9BRAS Unreviewed; 178 AA. AC R0I4E5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA37139.1}; GN ORFNames=CARUB_v10010429mg {ECO:0000313|EMBL:EOA37139.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA37139.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA37139.1; -; Genomic_DNA. DR RefSeq; XP_006304241.1; XM_006304179.1. DR GeneID; 17900630; -. DR KEGG; crb:CARUB_v10010429mg; -. DR KO; K09287; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 125 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 125 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 178 AA; 20135 MW; DC302CA860053CDB CRC64; MLNDAVSKAR EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPAMTTATG MNPSPTKGLL INLEDRTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLR AGDVVCFERS TGPDRQLYID WKVRSSPVQT VVRLFGVNIF NDRPNGVAVD CTGGKKRSRD DDLFSLGCSK KQTIINIL // ID R0I4Q7_9BRAS Unreviewed; 366 AA. AC R0I4Q7; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA37279.1}; GN ORFNames=CARUB_v10010882mg {ECO:0000313|EMBL:EOA37279.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA37279.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA37279.1; -; Genomic_DNA. DR RefSeq; XP_006304381.1; XM_006304319.1. DR GeneID; 17897593; -. DR KEGG; crb:CARUB_v10010882mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 366 AA; 41177 MW; 7C14A153A5149BB0 CRC64; MDNFFSSSNA NSVQDFSLDV NNNLSHFTTI PTYAHQPHHL LPPYPYPVEQ MAALMNPHQT LYSSDGFPQI PVGQTGSGFC SLVSNTNPCL GFLDPTKMAR INRKNAMIRS RNNPSPNSSP NDLVDSKRQL MMLDMKTSAQ IPEKKDLYPH STFDDKKLRV LCVKLLKKSD VGALGRIVLP KREAEGKLPK LTNKEGIIVE MRDVFSLQSW SFKYKFWSNN KSRMYVLENT GEFVKQNGLE TGDTLTIYED ESKNLYFAVT MSGKQNGGSG DESMEVNEII NNYDMNHYEE LMNDYMQGDE EEAAIAMLIG NLNDHYDPNP NDLMDLTIDT DHQHHQVQTA SSSSSVDHAD VGSSDDQASF SEYAGW // ID R0I7T0_9BRAS Unreviewed; 331 AA. AC R0I7T0; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA32508.1}; GN ORFNames=CARUB_v10015789mg {ECO:0000313|EMBL:EOA32508.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA32508.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA32508.1; -; Genomic_DNA. DR RefSeq; XP_006299610.1; XM_006299548.1. DR GeneID; 17893882; -. DR KEGG; crb:CARUB_v10015789mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 227 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 227 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 331 AA; 39001 MW; 7A6E4A55544FB9B5 CRC64; MGWNTGFERI KQERKDLGFF KIFQSADLSS ESMRAFPYNF MSRIPEKDLS YKMVIRAQWG KSWDVEVSKN TRYYYIEKPG WDQFVSDNAL GRNEFVTFIH KGKMIFNVYI YEQNCMEILI PRILMPMDCS GGIKREEEEC SYKDVKKEYE ETDESPERVE IKIRKKISEE SKTSKKKKTS KRVKNGMERG GSSRGVELKA RQKKAEAYNT SKKMKKKIKR NKKMTGAPEF KITIRNSYLK FLAIPKHFVD DHLPQKSKFF TIHHPDGLKS WKVLCLVREI RTIFSGGYSK LAREYPLLVG DKCTFKLIEP YAFILDISKK TREEITHCMI D // ID R0I8N3_9BRAS Unreviewed; 207 AA. AC R0I8N3; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA32863.1}; GN ORFNames=CARUB_v10016176mg {ECO:0000313|EMBL:EOA32863.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA32863.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870807; EOA32863.1; -; Genomic_DNA. DR RefSeq; XP_006299965.1; XM_006299903.1. DR GeneID; 17892182; -. DR KEGG; crb:CARUB_v10016176mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 97 189 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 207 AA; 23769 MW; AAB0A065F8A3902C CRC64; MNTEDYDNPS LSPTRPRLLD LFPSQSVALD LFPCRSVVLD LFPCQSGDFA RVVPSAARNE RRVVSLAHFR NMPREERDNV STELTLSIEG DIWKIKKTLS KSDVGIQTRL LIPKESANEH ILKYLTEEEI KLVEDEGNRG LKITLFDTAN KSTNQLCLKR WNSAGSYVLK SNWNKDFVEE KGLEAGKQIE LFWNPYASRL HFRVLKN // ID R0IF20_9BRAS Unreviewed; 360 AA. AC R0IF20; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA35348.1}; GN ORFNames=CARUB_v10020536mg {ECO:0000313|EMBL:EOA35348.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA35348.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870806; EOA35348.1; -; Genomic_DNA. DR RefSeq; XP_006302450.1; XM_006302388.1. DR GeneID; 17895308; -. DR KEGG; crb:CARUB_v10020536mg; -. DR KO; K09287; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 69 124 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 194 300 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 69 124 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 194 300 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40500 MW; 3415E7D00623F91F CRC64; MDSSCIEEIS SSTSESFSTT TAKKLSPPPP PPPPATALRL YRMGSGGSSI VLDPDNGVET ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEQ EEAARSYDIA ALRFRGRDAV VNFKTLLEDG DLAFLEVHSK AEIVDMLRKH TYADELEQNN KRRLFVSLDA NGTQRNGSSM VTNDNVLKTR EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPSKSPSSV TKGVLINFED VNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV TFERSTGLDR QLYIDWKVRS GPRETPVQVV VRLFGVDIFN VNTVKPNDVV ALCGRKRSRD DADDMFGLRC SKKQAIINAL // ID R0IGJ8_9BRAS Unreviewed; 348 AA. AC R0IGJ8; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA37470.1}; GN ORFNames=CARUB_v10011592mg {ECO:0000313|EMBL:EOA37470.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA37470.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA37470.1; -; Genomic_DNA. DR RefSeq; XP_006304572.1; XM_006304510.1. DR GeneID; 17897008; -. DR KEGG; crb:CARUB_v10011592mg; -. DR KO; K09287; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 51 108 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 181 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 51 108 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 181 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 348 AA; 39726 MW; BAF7597345A95529 CRC64; MDEMSNEAKT TTETSGSSDS VLPLLKRMKP TLVVAATTNP PALSNTATTT KYKGVVQQQN GHWGAQIYAD HRRIWLGTFK SAAEAAAAYD SASIKLRSFD ANSHRNFPWS DFTVHEPDFQ ECYTTEAVLN MIRDGSYQHK FRDFLRIRSQ IVASINIVGS KQVQGGGDQE SNKCFSCTQL FQKELTPSDV GKLNRLVIPK KYAVKYMPFI SNDHNEKEMG EGVEDVEVVF YDRAMRQWKF RYCYWRSSQS FVFTRGWNGF VKEKNLKEKD IIVFYTCDVP SNAKTLEGQS KNFLMIDVHY FSGNGFMVPE EVNKTARESS DEEMKLKNEE PKSEEKKGGF MLFGVRIQ // ID R0IH47_9BRAS Unreviewed; 520 AA. AC R0IH47; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10012424mg {ECO:0000313|EMBL:EOA37705.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA37705.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA37705.1; -; Genomic_DNA. DR RefSeq; XP_006304807.1; XM_006304745.1. DR GeneID; 17896729; -. DR KEGG; crb:CARUB_v10012424mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 425 506 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 520 AA; 58658 MW; 9B30BC32E9CC1883 CRC64; MDGCNVANVQ PDLSGTFNGS ESYMSEQLWK LCAGPLCHLP NLRDKVYYFP QGHIELVEAA TREELNQIQS NFDLPSKLEC RVISVRLKAE KNTDQVYAEI TLIPDARQVV IPTQNDSQYR PKVNSFMKIL TASDTSTHGG LSVPKRSATE CLPPLDMAIP VPTQDILTKD LHDSVWKFKH SFRGTPQRHL LTTGWSAFIT TKSLVAGDAF ILLRGETGEL RVGIRRARHQ QGNITSPLVS TENMRHGVIA SALHAFHNQC MFTVVFKPRS SQFIVNYDKF LDAVNNKFNV GSRFTMRFEA EDFSEKRYSG TIIGVGNFSP HWKDSEWRSL QVQWDELASF PRPEKVSPWE IEHIPSSSNV PQSSLLIKNK RSRHVNEIGS SSFSPHLLPP ILTQNPEVVQ PSMANEGGTS FRLFGVSLVV PFGKNESYQV QMQGVTVGRA LDLSVLNGYD QLIHELEKLF DLPGELRSRN QWEMVFTDHE GDVVLMGDVP WLEFCNMVKK ILICSKEEVN KLKSETNLPN // ID R0IJ37_9BRAS Unreviewed; 227 AA. AC R0IJ37; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA38470.1}; GN ORFNames=CARUB_v10010224mg {ECO:0000313|EMBL:EOA38470.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA38470.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA38470.1; -; Genomic_DNA. DR RefSeq; XP_006305572.1; XM_006305510.1. DR GeneID; 17900905; -. DR KEGG; crb:CARUB_v10010224mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 130 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 130 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 26000 MW; A3FC077388690134 CRC64; MDMNAAQNHF NKRARLFEDP NNRDARVMYP SNPTSAEQMN RGYGGSAAIQ SFFKDSKPEE TPPKVLKKRG RKKKNPNPED INSSTPGGDD SENRSKFYES ASARKRTVTA EERERAVNAA KTFEPANPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKLQLGEK QWPVRCLYKA GRAKFSQGWY EFTLENNIGE GDVCVFELLR TRDFILKVTA FRVNEYM // ID R0IK14_9BRAS Unreviewed; 522 AA. AC R0IK14; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=CARUB_v10011010mg {ECO:0000313|EMBL:EOA37323.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA37323.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA37323.1; -; Genomic_DNA. DR RefSeq; XP_006304425.1; XM_006304363.1. DR GeneID; 17899338; -. DR KEGG; crb:CARUB_v10011010mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 444 522 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 522 522 {ECO:0000313|EMBL:EOA37323.1}. SQ SEQUENCE 522 AA; 59124 MW; FBB5F8EBA45A42E8 CRC64; MDGCNVANVQ PDLSGTFYGS ESYMYEQLWK LCAGPLCHLP NLGDKVYYFP QGHIELVEAA TREELNQIQS NFDLPSKLEC RVISVRLKAE KNTDQVYAEI TLIPDARQVV IPTQNDSQYR PKVNSFMKIL TASDTSTHGG LSVPKRSATE CLPPLDMDIP VPTQDILTKD LHDSVWKFKH SFRGTPQRHL LTTGWSAFVT TKSLVAGDAF ILLRGETGEL RVGIRRARHQ QGNITSSLVS TENMRHGVIA SALHAFNNQC MFTVVFKPRS SQFIVKYDKF LDAVNNKFNV GSRFTMRFEA EDFSVKRYSG TIIGVDNFSP HWKDSEWRSL QVQWDELASF PRPEKVSPWE IEHIPPSSNI PQSFLLKNKR SRHVNKIEVV QPSMNNEGGT SLRLFGVSLV VPSGKNESYQ VSNTSKLCQK KEFGLTQKFK LPKMAESKQF SSTRSCTKVQ MQGVTVGRAL DLSVLNGYDQ LIHELEKLFD LGGELQSRNQ WEMVFIDHEG DHVLIGDVPW LEFCNMVKKI LI // ID R0IP37_9BRAS Unreviewed; 561 AA. AC R0IP37; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10011321mg {ECO:0000313|EMBL:EOA38923.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA38923.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA38923.1; -; Genomic_DNA. DR RefSeq; XP_006306025.1; XM_006305963.1. DR GeneID; 17900259; -. DR KEGG; crb:CARUB_v10011321mg; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 463 544 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 561 AA; 63337 MW; BB31605A2B9FAADB CRC64; MDGCNVANVQ PDLSGTFYGS ESYMYEQLWK LCAGPLCHLP NLGDKVYYFP QGHIELVEAA TREELNQIQS NFDLPSKLEC RVISVRLKAE KNTDQVYAEI TLIPDARQVV IPTQNDSQYR PKVNSFMKIL TASDTSTHGG LSVPKRSATE CLPPLDMGIP VPTQDILTKD LHDSVWKFKH SFRGTPQRHL LTTGWSAFVT TKSLVVGDAF ILLRGETGEL RVGIRRARHQ QGNITSSLVS TENMRHGVIA SALHAFNNQC MFTVFFKPRS SQFIVKYDKF LDAVNNKFNV GSRFTMRFEA DDFSVKRYSG TIIGVNNFSP HWKDSEWRSL QVQWDEFASF PRPEKVSPWE IEHIPPSSNV PQSFLLKNKR SRHVNKIGSS SSSSPHLLPP ILTQNPEVVQ PSMTNEGGTS LRLFGVSLVV PSGKNESYQV SNTSKLCQEK EFGLTQTFKL PKMAESKQFS STRSCTKVQM QGVTVGRALD LSVLNGYDQL IYELEKLFDL GGELRSRNQW EMVFIDHEGD HVLIGDVPWL EFCNMVKKIL ICSKEEVNKL KSERPISQTK S // ID R0IQP5_9BRAS Unreviewed; 1067 AA. AC R0IQP5; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CARUB_v10008159mg {ECO:0000313|EMBL:EOA39543.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; OC Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA39543.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., RA Mandakova T., Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., RA Brandvain Y., Coop G., Andolfatto P., Hu T.T., Blanchette M., RA Clark R.M., Quesneville H., Nordborg M., Gaut B.S., Lysak M.A., RA Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., RA Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid RT mating system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KB870805; EOA39543.1; -; Genomic_DNA. DR RefSeq; XP_006306645.1; XM_006306583.1. DR GeneID; 17898551; -. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000029121}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 939 1032 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1067 AA; 118124 MW; F1063C8ABB429639 CRC64; MKAPSNGFLP NSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSYNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKLNTLNH ISQQMQAQPA MVKSQQQQQQ LQMSHQQLQQ QGIYNTGSDV SAVANQVSCQ NPHQSTTQSQ LQQQSMLPNG VKMTHQNIHS GNKGSSQMTS FAQELQFQQQ LELHNSSQSL RNQQEQSSLH SLQQSLSQNP QQLQMQQQSP KPSPSQQLQL QLLQKLQQQQ QQQSIPPVTS SLQPQFSALQ QPQSHQLQQL LSSQNQQPLA HGNNSFSAST FMQPPQIQVN HQQQGQMNNK PLVAAGRSHS GHTDGEAPSC STSPSTNNTG HDNVSPTNFL SRNQQGQAVS VSASESVFER ASNPVQELYA KTDNRINQGM VNLKSAGEQF KFKGAVTDQI DVSTAGTTYC PDVVGSAQQQ QTFPLPSFGF DGDCQSHQPR NNLAFASNLE AVTSDALYSQ KDFQNLVPNY GNAPRDIETE LSSAAISSQS FGIPSIPFKS GCSNEVGGIN DSGIMNGGGL WPNQTQRMRT YTKVQKRGSV GRSIDVTRYS GYDELRHDLA RMFGIEGQLE DPLTSDWKLV YTDHENDILL VGDDPWEEFV NCVQNIKILS SAEVQQMSLD GDLAAIPATN QACSETDSGN AWKVHYEDTS AAASFNR // ID S1S485_THECC Unreviewed; 171 AA. AC S1S485; DT 18-SEP-2013, integrated into UniProtKB/TrEMBL. DT 18-SEP-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY20511.1}; GN ORFNames=TCM_046144 {ECO:0000313|EMBL:EOY20511.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY20511.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY20511.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE133516; EOY20511.1; -; Genomic_DNA. DR EnsemblPlants; EOY20511; EOY20511; TCM_046144. DR Gramene; EOY20511; EOY20511; TCM_046144. DR OMA; RIFLFEY; -. DR Proteomes; UP000026915; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 171 AA; 20051 MW; 011692ED7AC8481F CRC64; MAHFEKYLTE VDVKKQMAIP TDFMRHLPYY EGGRTIFLPV YDVSGNLWEN FGYYIRREGK DYARPVFQGD WRKYVRANNL KPGDKIIFRV EENDANGAPR YTIAAQRRIF LFEYRFTASE WLIPKSAIKD LSHMISQEVA AIDLYSTSVG LLATTDCFFD FQLTKESPMK M // ID S1SN06_THECC Unreviewed; 193 AA. AC S1SN06; DT 18-SEP-2013, integrated into UniProtKB/TrEMBL. DT 18-SEP-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOY20529.1}; GN ORFNames=TCM_046193 {ECO:0000313|EMBL:EOY20529.1}; OS Theobroma cacao (Cacao) (Cocoa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; OC Theobroma. OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY20529.1, ECO:0000313|Proteomes:UP000026915}; RN [1] {ECO:0000313|EMBL:EOY20529.1, ECO:0000313|Proteomes:UP000026915} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23731509; RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L., RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C., RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., RA Feltus F.A., Mustiga G.M., Amores F., Phillips W., Marelli J.P., RA May G.D., Shapiro H., Ma J., Bustamante C.D., Schnell R.J., Main D., RA Gilbert D., Parida L., Kuhn D.N.; RT "The genome sequence of the most widely cultivated cacao type and its RT use to identify candidate genes regulating pod color."; RL Genome Biol. 14:R53-R53(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE133684; EOY20529.1; -; Genomic_DNA. DR EnsemblPlants; EOY20529; EOY20529; TCM_046193. DR Gramene; EOY20529; EOY20529; TCM_046193. DR Proteomes; UP000026915; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000026915}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000026915}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 22009 MW; 957090ACD90A7E65 CRC64; MAILEKTIDG DDINQLTITK KFDAEAFPSA AGGGAMTVKD EQGSLWTFKY KVKLRNKRVL SGHWVHFVRN NRVRVGDRVA ISNNDGWSSE AEYKIELAAM ARIFEKYLTT QDKDEGLKIR SGADLLPRVN ENLRVMDGKS KKVLVFEYQV SGRETPVIRG KQWKKFISRY NTGDTVTLYT YQGCDAEYEI SVR // ID S5G1J2_CUCSA Unreviewed; 716 AA. AC S5G1J2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN Name=ARF10a {ECO:0000313|EMBL:AGQ53957.1}; GN ORFNames=Csa_6G141390 {ECO:0000313|EMBL:KGN46842.1}; OS Cucumis sativus (Cucumber). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; OC Benincaseae; Cucumis. OX NCBI_TaxID=3659 {ECO:0000313|EMBL:AGQ53957.1}; RN [1] {ECO:0000313|EMBL:KGN46842.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19881527; DOI=10.1038/ng.475; RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G., RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., RA Jia Z., Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., RA Li B., Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., RA Zhao B., Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., RA Kim J.Y., Xu Y., Heller-Uszynska K., Miao H., Cheng Z., Zhang S., RA Wu J., Yang Y., Kang H., Li M., Liang H., Ren X., Shi Z., Wen M., RA Jian M., Yang H., Zhang G., Yang Z., Chen R., Liu S., Li J., Ma L., RA Liu H., Zhou Y., Zhao J., Fang X., Li G., Fang L., Li Y., Liu D., RA Zheng H., Zhang Y., Qin N., Li Z., Yang G., Yang S., Bolund L., RA Kristiansen K., Zheng H., Li S., Zhang X., Yang H., Wang J., Sun R., RA Zhang B., Jiang S., Wang J., Du Y., Li S.; RT "The genome of the cucumber, Cucumis sativus L."; RL Nat. Genet. 41:1275-1281(2009). RN [2] {ECO:0000313|EMBL:KGN46842.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=19495411; DOI=10.1371/journal.pone.0005795; RA Ren Y., Zhang Z., Liu J., Staub J.E., Han Y., Cheng Z., Li X., Lu J., RA Miao H., Kang H., Xie B., Gu X., Wang X., Du Y., Jin W., Huang S.; RT "An integrated genetic and cytogenetic map of the cucumber genome."; RL PLoS ONE 4:E5795-E5795(2009). RN [3] {ECO:0000313|EMBL:KGN46842.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=20565788; DOI=10.1186/1471-2164-11-384; RA Guo S., Zheng Y., Joung J.G., Liu S., Zhang Z., Crasta O.R., RA Sobral B.W., Xu Y., Huang S., Fei Z.; RT "Transcriptome sequencing and comparative analysis of cucumber flowers RT with different sex types."; RL BMC Genomics 11:384-384(2010). RN [4] {ECO:0000313|EMBL:KGN46842.1, ECO:0000313|Proteomes:UP000029981} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=22047402; DOI=10.1186/1471-2164-12-540; RA Li Z., Zhang Z., Yan P., Huang S., Fei Z., Lin K.; RT "RNA-Seq improves annotation of protein-coding genes in the cucumber RT genome."; RL BMC Genomics 12:540-540(2011). RN [5] {ECO:0000313|EMBL:AGQ53957.1} RP NUCLEOTIDE SEQUENCE. RA Guo W.Q.; RL Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases. RN [6] {ECO:0000313|EMBL:KGN46842.1} RP NUCLEOTIDE SEQUENCE. RA Huang S., Zhang Z., Lin K., Zhou Q.; RL Submitted (OCT-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KC843342; AGQ53957.1; -; mRNA. DR EMBL; CM002927; KGN46842.1; -; Genomic_DNA. DR RefSeq; NP_001275525.1; NM_001288596.1. DR RefSeq; XP_011656307.1; XM_011658005.1. DR GeneID; 101216500; -. DR KEGG; csv:101216500; -. DR Proteomes; UP000029981; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 2: Evidence at transcript level; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000029981}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000029981}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 604 684 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 716 AA; 79039 MW; 6579493058C20A77 CRC64; MKEAEKILDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLIPCR VLAVKFLADL ETDEVFANVR MVPLPNSDLN FEEEGGFGSS GSENNMEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA SDHPYGWNPG GGNCIPPYGG LTMFLRDDDN KLSRKGSLSS SGSGGNLRGK GKVRPESVME AAALAASGQP FEVVYYPRAS TPEFCVKASS VRAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPNSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIQLSPFSP PRKKFRLPQH PDFPLDSQFP LSSSFSSNTL RPSSPMCCLS DNTSVGIQGA RHTQFGISLS DFHLNNKLQL GLVPSSFQQI DFHSRISNRS VTDHRDSSSH NSSVLQNGEK TGPKLERSDS VKKHQFLLFG QPILTEQQIT CSSSSDIRSP PTEKSSSDVN LERVKFLSHG SGSTFKQQVS PNKSPGVGFP WYQGYQATEL GLDIGHCKVF MESEDVGRTL NLSVISSYEE LYRRLANMFG MEKPDILSHV LYQDATGAVK QAGDKPFSDF IKTARRLTIL TDSGSDKLGR TLMDGMRSGE NGLDASNKTG PLSIFA // ID S8BVG0_9LAMI Unreviewed; 399 AA. AC S8BVG0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS58580.1}; GN ORFNames=M569_16234 {ECO:0000313|EMBL:EPS58580.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS58580.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS58580.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS58580.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01009081; EPS58580.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 141 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 240 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 301 392 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 240 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 301 392 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 399 AA; 45061 MW; 98236B98825F8659 CRC64; MGRDSFKRKR EPISDYSDSP VEISSEEDII KPSKPPPPLV KKIVTFAKTM DASSITYSRM YIPLGFLNEA GIRSDMSIEL RDRKGRLWPV TLSYNSRKLS SGWKSFVDNN GVKIGNRVLF SFKPGGNGQG SRLPFSSLDK LRWVVKSQNR VFLMIKTKLF FHQKIPWKAA AGLGKKIHLR ASNIRGRAWR VAVETMGENL FFAGGGWKAF SRDVHLKLGE YIFFSRTGRS EFEASVYEIT GCERDLRIPV SESETSSETG RGSIKREQIS DSDSMGDSPI EISGEEDTKR TKPPPVVKKS ISFAKTMTFS NIKNRMFLPV KFLNEAGIRG SMSIEVRDGK GRSWPMILNY KSRNLWGWRS FVRNHGVQTG NTVVFSFEPG GNVLEAIIHK KKTVRKGLL // ID S8BWH1_9LAMI Unreviewed; 474 AA. AC S8BWH1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_15887 {ECO:0000313|EMBL:EPS58925.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS58925.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS58925.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS58925.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01008790; EPS58925.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 474 474 {ECO:0000313|EMBL:EPS58925.1}. SQ SEQUENCE 474 AA; 52191 MW; 8BF3D7268A9643EA CRC64; MEIDLNHGVV VVQSTNSSSS RSSNAASSSS SSSSSSPPPP PPPPCSVSSS SSPSSICKEL WHACAGPLTF LPKKWSLVVY FPQGHLEQQT LSSPVEEIDT SFRLPSQIFC RVLDVALLAN KENDEVYTKL TLLPLPEMMV DDDDDDEGND DGRDDLPSKS TSHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKEQR PCQELVAKDL HGVEWKFRHI YRGQPRRHLL TTGWSSFVGQ KNIVSGDAVL FLRGEGRELW LGIRRAARPR NGLPDSVASS RAAVLAPVAN AVSSNGPFSI FYSPRAKNRA EFIVSYKQYA KCAAAAGQVP VGTRFKMRLD FDDTPERRFS GVVTGISDVD PYRWPNSKWR CLAVRWDNDA SIGRHDRVSP WEIDLSAHCP QFAVESSPRI KKLRFGGSLV GGGGERSDFE ESSPSMRSSE NAGGSESQQR PPLLFRSDRI DRRPSFETQP PANA // ID S8BWL4_9LAMI Unreviewed; 215 AA. AC S8BWL4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS58769.1}; DE Flags: Fragment; GN ORFNames=M569_16044 {ECO:0000313|EMBL:EPS58769.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS58769.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS58769.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS58769.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01008920; EPS58769.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS58769.1}. FT NON_TER 215 215 {ECO:0000313|EMBL:EPS58769.1}. SQ SEQUENCE 215 AA; 23980 MW; 84892548C63B78E8 CRC64; DREPLFEKPL TPSDVGKLNR LVIPKQHAEK YLPMNGGGGG TGTDSGAENG VLLDFEDEIG KTWRFRYSYW NSSQSYVLTK GWSRFVKEKR LDAGDVVTFS RHRSSRLFIG WRRRKPKNTI TSPSPPPQTA IHSGGQNNAP KTTGKQQQQQ NPPPCFFFSR NTGSRIPVTF TGSPVSKNQT AAGNSKRLRL FGVNLEFQSD EPEPSMPIDS PITVQ // ID S8BXR4_9LAMI Unreviewed; 624 AA. AC S8BXR4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_15464 {ECO:0000313|EMBL:EPS59345.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS59345.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS59345.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS59345.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01008435; EPS59345.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 73 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 526 610 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 73 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS59345.1}. FT NON_TER 624 624 {ECO:0000313|EMBL:EPS59345.1}. SQ SEQUENCE 624 AA; 69628 MW; BECFABBBEE3299F4 CRC64; DFSQQPPTQE LIARDLHNIE WKFKHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVVFIWN EKNQLLLGIR RANRPETVIP TSVLSSDSMH LGLLAAAAHA ASTYTRFTVF YNPRASPSEF IIPLAKYLKA VYHTRVSVGM RFRMLFETDE SSVRRYMGTI TGISDSDPLK WPNSHWRSVK VGWDESAAGG RQPRVSLWEI EPLTTFPIYP TSFPLRLKRY HSFSGMKADD MRLTSSPFWL CGDGLYQGMG FNPWLQQQQQ PRLDSSLLGL QTDIYQTMAN AAAVSTQEGC NVVQFQQPRA PESRTSGFIE SQMLQNNSKP SAYFLESHAA TEVIEPQLLH QSSFSVPMQI RHQYNEQPHM NYQVQLQAKQ SLSNAKLIPV DSVSPLHSVL GSAIDDEASN SFLSFRCRPT KRIAVDPLLS GNMNSAAAQS SVSLLPPFPG VEQPESNDPQ NHLLFGVNID SSSPLGLPSN SESGSMAFPG SSYVSGFGAD CSLNFNPKVS SSTCIDESDF ILSSENNLEQ AAPLDSTFVK VYKSGSFGRS LDITKFSSYH ELRSQLARMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWEEFVNSV WCIKILSPQE VQEMGTLGME LLSS // ID S8C5B5_9LAMI Unreviewed; 397 AA. AC S8C5B5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_12802 {ECO:0000313|EMBL:EPS61990.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS61990.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS61990.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS61990.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01006463; EPS61990.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS61990.1}. FT NON_TER 397 397 {ECO:0000313|EMBL:EPS61990.1}. SQ SEQUENCE 397 AA; 44456 MW; FDCC3A7EE549A257 CRC64; TVWDMKLSSS SSSGSGLNSQ SEEGEKKKCL NSELWHACAG PLVSLPQIGS RVVYFPQGHS EQIAASTNKE VVDLTILSYP GLRPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD MCPLPAVLGN LRQQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQSPPVQELI AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVTAKKLVAG DSIIFIWSEN NQLLLGIRRA SRPQPVMPSS LLSSDSMHIG LLAAAAHADA TNSPFTIFYN PRASPSEFVI PLSRYVKAVY HTRVSVGMRF RMHFKNEESS VCRFMGTITG ISDLDPVRWP NSRWRSVKVG WDESTAGGYR QLRVSLWEIE PLTAYPMYTC PFSLRTKRPW SSGFPSI // ID S8C6C8_9LAMI Unreviewed; 486 AA. AC S8C6C8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS62319.1}; GN ORFNames=M569_12471 {ECO:0000313|EMBL:EPS62319.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS62319.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS62319.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS62319.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01006223; EPS62319.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 429 473 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 486 AA; 55576 MW; EB7B885466EF7CF2 CRC64; MKLKIVHQNQ ETRPGEDHGI REFEPEMKKT EEEQILFSSG DDHVEQQIFE PLEPTPVSNP DSVLLSGKRK RKPKWVIDEF VPAFRRKKKK KKSSSSNRKH GARDAAGLWT SSSRFKSPTV MRAEEVQSSL GDDQPSFLKP LVRSHVGSCF WMGLPVPFCR IHLPGKDAEM ILENENGEEF PIKYIAHKTG LSAGWRKFAA GNKLLEGDVL IFQLIGPCRL KVYIIRANDL PEVDGALSLL NLESRIKRND PDATLDSCNE KKRHVSKQSP LLDVLTLEQQ PENDSDEVAS EVLESTKTSE TCYSFEDVKS FEGFHIMVNG VCIDSDIPEQ TRRNYYDLCC TRNQFLHDHL LPGLYRKLAS SMIVETLNIA DSIRACKLVD TPREDFEVWE KSLRSFELLG LDVGFLRARL QELSSLAFES EGASNVREYR EARDGKLRAE DEIRKLESRL GELKEARERY DGLSERRKAE AERFESTFRE AVDAPW // ID S8C7S5_9LAMI Unreviewed; 480 AA. AC S8C7S5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_11944 {ECO:0000313|EMBL:EPS62844.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS62844.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS62844.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS62844.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01005857; EPS62844.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS62844.1}. FT NON_TER 480 480 {ECO:0000313|EMBL:EPS62844.1}. SQ SEQUENCE 480 AA; 53527 MW; 83B6880AB6577C66 CRC64; VERIDESMKL STSATSQQVH EGEKKCLNSE LWHACAGPLV SLPSVGSRVV YFPQGHSEQV AATTNREVDA QLPNYPTLPP QLICQLHNVT MHADVETDEV YAQMTLQPLA PVEEKDTYLP VEFGIPSRQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQTPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDKNQLLL GIRRASRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF TVFYNPRASP SEFVIPLSKY AKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGIGELD PVRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWYPGASS FQDAGNEAMN SSMAWLRGES GEPGGFNALN FQSVGMFPVV QQRFDPTAMR NDVGQYQAML AAAGMHGFGS GSDLMKHQVM QFQQLTSVNS // ID S8C8X0_9LAMI Unreviewed; 503 AA. AC S8C8X0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_11500 {ECO:0000313|EMBL:EPS63285.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS63285.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS63285.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS63285.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01005582; EPS63285.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS63285.1}. FT NON_TER 503 503 {ECO:0000313|EMBL:EPS63285.1}. SQ SEQUENCE 503 AA; 56998 MW; 6A8E96A5620EB66C CRC64; KAVDTEAALY TELWKACAGP LVTVPRKQEL VFYFPQGHME QVEASTNQSA DQQMPVYNLP SKILCRVVNV QLKAEVETDE VYAQITLMPE PNQDENEVKR EHPPPPSPRF RVRSFCKTLT PSDTSTHGGF SVLKRHADEC LPQLDMSKQP PTQELVAKDL HGNEWRFRHI FRGQPKRHLL QSGWSVFVSS KRLVTGDAFI FLRGENGELR VGVRRAMRQQ GNAPSSVISS QSMHIGVLAT AWHAIQTKTM FTVYYKPRTS PTEFIVPFDR YMESVKNNYS VGMRFKMKFE GEEAPEQRFT GTIVGLEDSD AKRWPGSKWR CLKVRWDETL SVPRPERVSP WNIEHALTLP TLNPVPVART KRPRPSALPS FSESSVLTRE GSSKMIMDPL PGGTVFPGIV LPEVPESENS EKPSLLWNTL LDDEKVDVST PRRFTSEKWL PMGRQDPSFG NILSGFEPPI NPPRSFGRDH ETKFSFHGNI PSSGLSFSLT DSTSKKNHDH WSM // ID S8C9K4_9LAMI Unreviewed; 145 AA. AC S8C9K4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS61036.1}; GN ORFNames=M569_13764 {ECO:0000313|EMBL:EPS61036.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS61036.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS61036.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS61036.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01007129; EPS61036.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 145 AA; 16703 MW; 82AC44C75FB2E06D CRC64; MIILPIPNST FRLASAVDLR ATVAKYEKAE FFKIFLPDRC AQRIQISPVY VKKYSKTVKE RIILKDSDGK QWQIEVKKDG GAVYMCNGWP DFIKHYDLKY ADMLVFTYDR SYSFNVKVFG SNGCRKDPPT AIDDFDVLSV KSEPL // ID S8CA51_9LAMI Unreviewed; 198 AA. AC S8CA51; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS61236.1}; DE Flags: Fragment; GN ORFNames=M569_13563 {ECO:0000313|EMBL:EPS61236.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS61236.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS61236.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS61236.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01006992; EPS61236.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS61236.1}. FT NON_TER 198 198 {ECO:0000313|EMBL:EPS61236.1}. SQ SEQUENCE 198 AA; 22627 MW; C592E8F37AF0A2C5 CRC64; DREQLFEKAL TPSDVGKLNR LVIPKQHAER YLPMNGGVDS GENGVLLNFE DDAGKIWRFR YSYWNSSQSY VLTKGWSRFV KEKRLDAGDV VVFSRHRSIA GRLFIGWRRK KNKNPVASPS PPQNGIFSGQ NYAPKTGPSS STHQIGSSVS SGNSKRLRLF GVNMEFQRDE SEPSIPEDSP IAVHFYHNHH HQYYPYQM // ID S8CAY5_9LAMI Unreviewed; 892 AA. AC S8CAY5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=M569_10686 {ECO:0000313|EMBL:EPS64094.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS64094.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS64094.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS64094.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01005045; EPS64094.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 761 854 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 892 AA; 98463 MW; 5947344C1F2B087D CRC64; MKIASTIATS SHSAEGGKKL INSELWHACA GPLVSLPNAG SLVVYFPQGH SEQVASSMQK EADGIPSYPN LPSKLICMLH NVTLHADAET DEVYAQMTLQ PVGKYDQEAL IVSDIGLKHS KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELSVK DLHDQTWTFR HIYRGQPKRH LLTTGWSVFV SSKRLVAGDG VLFVRDERSR LLLGIRRANQ NQPVLSSSII SSDSMHIGIL VAAAHAAANN SPFTIFYNPR SCRSDFVIPL AKYNKALYTQ VSPGMRFRMM FESEESGLRR YMGTVTGISD LDPTRWKGSQ WRNLQVGWDE SNAGERPSRV SIWDIEPVIS PFYICPPPFF RPRNPYFPDG DMDMECMLMR QGMMPLMGND LSFKDGSIFP GLNLVQRMSM QNQLSSSANQ YGLVSSPIMQ TSSNFQANLQ QQGSLHPQQS PLLLTSSGGR MTCDHLATNQ GLLQPSAVCS CRVQQQLPME QSELQQHCRK NGPHGAAAIE NLPFAAAQEG SLQLIHQEAK SKTRSQQRMQ MQMPLVQKKV QMKGSSSLNP VMDFQQMNGI SFSPAASLQQ DAPVIPEDAP SCSSMSHSRS NILLPQRILN FKNHADSSSQ LVRESSSHGN PDVGMKHELS SNSKAADIHL DVTSPSPASC YLYAAANPLT ATDADDALLS RGYDSGKNLQ DLLFNYSDIP TPPTDMSSGI QSQSFSVPNI SAKTVYMNDA DVNDVVVPNG GRWSNQTPRM RTYTKVQKRG SVGRTIDVNR YKGYEELKQD LARMFAIEGL LGDQQRSEWK LVYVDHENDI LLVGDDPWEE FVGCVQSIKI LSSAEVQQMS LDGGDHPAAG QQLNQACNNS ADGEATMIPW RGNYENNSAF DH // ID S8CB08_9LAMI Unreviewed; 414 AA. AC S8CB08; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS64119.1}; DE Flags: Fragment; GN ORFNames=M569_10660 {ECO:0000313|EMBL:EPS64119.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS64119.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS64119.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS64119.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01005030; EPS64119.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 295 397 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 295 397 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS64119.1}. FT NON_TER 414 414 {ECO:0000313|EMBL:EPS64119.1}. SQ SEQUENCE 414 AA; 46546 MW; 5D0A2463B5675FEA CRC64; GFSFLQGNGE LAAIFLEWLK QNRDSISAED MRSIKLKRST IESASKRLGS DTEGKKQLLK LILEWVEQHQ LQKKRMRELG GASHHLQCPY QQENPNFQPY AAPLPPPVVS PYHHHHHHHQ WPPMSGGGCC YVDQIPMLPL GTEFQTMQPH HQSWPAPPYA MGGCSTGFGH AHKCCSNQQG SAYVGNHPYG GFDASKSSNG GCSATKEARK KRMARQRKQL YNHRHSAAAA TNNIISGNDS VSSSVRDHDD GDGSWMYWSS PANPLPVDPP HKHSEEEIDA AVAGWKSEKN LKFLLQKVLK QSDVGNLGRI VLPKKEAESH LPELESRDGI SIAMEDIGTS RIWNMRYRFW PNNKSRMYLL ENTGEFVRVN GLQEGDFIVI YSDAKSGKYM IRGVKVRQPG NKPEIKKPPR KNSR // ID S8CCB4_9LAMI Unreviewed; 808 AA. AC S8CCB4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_10246 {ECO:0000313|EMBL:EPS64535.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS64535.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS64535.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS64535.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01004759; EPS64535.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 695 779 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS64535.1}. FT NON_TER 808 808 {ECO:0000313|EMBL:EPS64535.1}. SQ SEQUENCE 808 AA; 89394 MW; 8D323820C5011822 CRC64; QVAASMKKGM DMQVPSYPNL PPKLLCVLQS LILNADPETD EVYAQMTLQP VPSFDKDALL RSDLSMRANK PQMEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFTMQ PPAQELVARD LHDSLWTFRH IYRGQPKRHL LTTGWSHFVS GKRLIAGDSV LFIRDEKQQL LLGIRRANRQ PTALSSSVLS SDSMHIGILA AAAHAAANNS PFTVYYNPRA SPSEFVIPLA KYYKAVCSNQ ISLGMRFRMI FETEESGTRR YMGTITGISD SDPVRWKNSQ WRNLQARLIW WDESTAGEKR SRVSIWEIDP VTAPFFICQT PSPLFRPKRP RLLPGMPDDD PCDLDIMFWS STMPWIGDEL GSRKDPQSFP GLSLAQWMNM QQNSNCMSPL PGSSHRHNEL QNNGSRPNRQ QPAVQDHHQI QKLVVPSSSL IETNQILRPC QQQICNQSLL SPSDILSQPQ LNIISDQLQL VDVIQPSFSN PTADVSSIRI EQHQKLLSGQ VGRRSSLNHL ENNQLSAVTT EDVPSCSTSP SATNNAASLV MLRDVKQPPF NASVTQSRGF YDPARGGGGR ADYLDSSPSA ATSVLSQNNS SSACFNPLSA APPPRGDPRN HVVFGSDFES QLGMAMIPPG DHGNMMASFD ATAKETHPDF SSSVVTQSCG APDMAFDSFD MAMNDDNDNF GNAGVSSWAG VPRMRTYTKV YKRGAVGRSI DVTRYSSYEG LKHDLARRFG IEGQLEDGLR VGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDDF GNGVVSKQAC SSSENNGA // ID S8CIL4_9LAMI Unreviewed; 590 AA. AC S8CIL4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_08201 {ECO:0000313|EMBL:EPS66575.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS66575.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS66575.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS66575.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01003608; EPS66575.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 114 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 507 584 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 114 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 590 590 {ECO:0000313|EMBL:EPS66575.1}. SQ SEQUENCE 590 AA; 64989 MW; 6D76072346B8643C CRC64; MEESSSSIDP QLWQACAGSM AEIPSLNSAV FYFPQGHCEH ASEAVDFSKI ARVPPPYIPC RVSAVHHMAD HDNDEVFLKM RLMPLDRNPF GFDDSNDDDS SASQPRSSSV AASFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYSADPP VQSIVAMDIH GRSWKFRHIY RGTPRRHLLT TGWSSFVNSK SLVAGDSIVF VKTDDGHLRV GIRRSKRGGW NPNPNRENGR RRVRAEDVLR AVALAADGEE FEVVYYPCGS TPEFCVRAAV VKAAMEVGWG SGMRFKMAFE TEDSSRISWF VGTVASVQVA DPVKWPGSPW RLLLVNWDEP DLLHNVKRVN PWLVEPVTAS SSAFNMNGFP MSSSSSSSSF SPPFKKLRFT AMAEAQEFSR FGYHHQIMGV ASRSSFVTPA GMQGARHPPR YGVSMAASSY FGQQQQHPLS ISIKPSSADD EPATVTKKTT SAPFLLFGQP ILTDEQITRM GFEDDGTTAV GIDLNRKNRD EPLPVLDGQC KVFLGSEDVG RSLDLPSLGS YDELRRKVGV LLGGEATNLI VYSDSKGAVK QLGDEPFLTF MRSARRLTIL SDTRNCKNND // ID S8CKP0_9LAMI Unreviewed; 167 AA. AC S8CKP0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS67764.1}; DE Flags: Fragment; GN ORFNames=M569_07011 {ECO:0000313|EMBL:EPS67764.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS67764.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS67764.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS67764.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002939; EPS67764.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 167 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 167 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS67764.1}. FT NON_TER 167 167 {ECO:0000313|EMBL:EPS67764.1}. SQ SEQUENCE 167 AA; 19133 MW; 520DD330861D6E88 CRC64; KKVIRKPSEQ SLDLRRSRRV ADLPPKSYKE NAVEPQGKAR RSGHRRDLSN RVYASDEDRE YATHRAEELQ SKLDQDTNYP SFVKPMLQSH VTGGFWLGLP LGFCKRHLPR RDVMMKLIDE EGGEFLAKYL SLKTGLSGGW RGFAMDHELV DGDAIVFQLT EPTTFKV // ID S8CPY4_9LAMI Unreviewed; 428 AA. AC S8CPY4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=M569_05953 {ECO:0000313|EMBL:EPS68815.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS68815.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS68815.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS68815.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002431; EPS68815.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 428 AA; 48240 MW; 7A8D99F00053F476 CRC64; MALIPTSSLC GGRQTGPAND ALYRELWHAC AGPLVSVPHE GERVYYFPQG HMEQLEASMH QALDQQLPSF DLPSKILCKV MHVQLRAEPE TDEVYAQITL LPEADGCPEY LSLDNIGFGK TQSEIRSPDP PLPEPQSCIV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMVQQPPS QDLVAYDLHG SEWHFRHIFR GQPRRHLLTT GWSVFVSAKK LVAGDAFIFL RRENNELRVG VRRLMRQLNN MPSSVISSHN MHVGVLATAS HAITTGTLFS VFYKPRSSQS EFVISVNKYL DAQNHKLSVG MRFKMRFEAE EAPERRFGGT IVGIEKGASP RWPDSEWRSL KVQWDEPSST IRPDKISPWE LEAVNAATPS TSQAQQRAKR TRPAVLCSPI QELPSPGFPF FLRLVLVHRR YELLHRSF // ID S8CQC0_9LAMI Unreviewed; 141 AA. AC S8CQC0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS68925.1}; DE Flags: Fragment; GN ORFNames=M569_05842 {ECO:0000313|EMBL:EPS68925.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS68925.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS68925.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS68925.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002369; EPS68925.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS68925.1}. FT NON_TER 141 141 {ECO:0000313|EMBL:EPS68925.1}. SQ SEQUENCE 141 AA; 16192 MW; D4819AFCA99371C6 CRC64; YAGAAEPESE SETEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSA ASESKGLLLT FRDPAGKSWR FRYSYWNSSQ SYVMTKGWSR FVKDKKLDAG DVVSFHRAAK DHRNRSDRLL FIDWRRRPDV AIPPPATAFS I // ID S8CTV0_9LAMI Unreviewed; 164 AA. AC S8CTV0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS68316.1}; DE Flags: Fragment; GN ORFNames=M569_06459 {ECO:0000313|EMBL:EPS68316.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS68316.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS68316.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS68316.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002667; EPS68316.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS68316.1}. FT NON_TER 164 164 {ECO:0000313|EMBL:EPS68316.1}. SQ SEQUENCE 164 AA; 17859 MW; 8D30A335F68EA03A CRC64; EKAVLTPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPIAH PEGFPLNVLD TNGKAWVFQF RFWPNNNSRM YVLEGITPCI QSLQLQAGDI VIFSRLEQKG TLVMGGRKTP ATQSVEKGVE CTIATTNVLG IGDSCARNSI GVPISFNCQV RGKVVENSPV SHPK // ID S8CXH2_9LAMI Unreviewed; 583 AA. AC S8CXH2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_05037 {ECO:0000313|EMBL:EPS69726.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS69726.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS69726.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS69726.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01001996; EPS69726.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 517 583 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 106 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS69726.1}. FT NON_TER 583 583 {ECO:0000313|EMBL:EPS69726.1}. SQ SEQUENCE 583 AA; 65389 MW; 96FA21F5130B0B54 CRC64; LYEELWKACA GPLVEVPRVG ERVYYFPQGH MEQLEASTNQ ELSQRIPMFN LPPKILCRVF NIQLLAEQET DEVYAQITLM PEADQTEPKS PDSYPDEPSR PVVHSFCKVL TPSDTSTHGG FSVLRKHASE CLPPLDMSQQ IPSQELIAKD LHGIEWHFKH ILRGQPRRHL LTTGWSTFVT SKRLIAGDSF VFLRGGETGE LRVGVRRHSN TQSSMPSSVI SSQSMHLGVL ATASHAVLTQ TIFVVYYKPR VSQFIISLNK YLEAMNQDLG VGMRFKMRFE VEDSPEKRFS GTIVGVEDVS PCWEDSKWRT LKVQWDEPAS ISRPERVSPW EIQPFVSPAP LSVLHPLPVK HKRIRSQIET PVSGKACYCI MSPFDSNFSF RHFSQRSNSI VKKTDLGTAS ANHCSNNSNN SSTHIDAAST LANAPPPSIP HESEEAKSGS AWSVVTDLSK IPGNSPSSKL HTATPPCRLF GIDLNRPSCA EKTRLRSNSS SSSRTRTKVI NNSSLSYFYK KTPHITFSKK KVQMQGVAVG RAVDLNSLKG YDDLITELEE MFEIRGELRP RSKWEIVYTD NEGDTMLAGD DPW // ID S8CZ53_9LAMI Unreviewed; 194 AA. AC S8CZ53; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 12-APR-2017, entry version 16. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS72300.1}; DE Flags: Fragment; GN ORFNames=M569_02457 {ECO:0000313|EMBL:EPS72300.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS72300.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS72300.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS72300.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01000894; EPS72300.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 137 194 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS72300.1}. FT NON_TER 194 194 {ECO:0000313|EMBL:EPS72300.1}. SQ SEQUENCE 194 AA; 21158 MW; 414CF5D0A41B7EBF CRC64; KMKVQPTSAT GGAVPTANPS AAEGDPKKSI NGELWQACAG PLVNLPVAGT LVVYFPQGHS EQVAASMKKD IDAQVPNYPN LPSKLLCVLH SVILNADPET DEVYAQMTLQ PVASFDKDGL LRSDLSMRAN KPQMEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTL QPPAQELVAR DLHDNVWTFR HIYR // ID S8CZS7_9LAMI Unreviewed; 338 AA. AC S8CZS7; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_04145 {ECO:0000313|EMBL:EPS70611.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS70611.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS70611.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS70611.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01001616; EPS70611.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 73 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 73 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS70611.1}. FT NON_TER 338 338 {ECO:0000313|EMBL:EPS70611.1}. SQ SEQUENCE 338 AA; 38039 MW; 7ACA6484689986EE CRC64; DMSKQPPTQE LVAKDLLGNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGDLRVGVR RAMRQQGNSP SSVISSHSMH LGVLATAWHA IQTKTLFTVF YKPRISPAEF IVPYDQYMES VKNNYSIGMR FKMRFEGDEA PEQRFTGTIV GVEDADPKRW PDSKWRCLKV RWDETSTFPR PERVSPWKVE PALSPPAMNP HPVHRQKRPR SSIVPSSPDS SVLTREGPSK ITMDPSTAAN VFPPRVFQGQ EIPTLRGAIA ESNESESTDK PQLWNPSDDE KIDVISTTSR LFGSEKCAAA QSSSFVDMLS GFGSKMNTAA RDFCRPTG // ID S8D1S6_9LAMI Unreviewed; 250 AA. AC S8D1S6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 17. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS71296.1}; GN ORFNames=M569_03466 {ECO:0000313|EMBL:EPS71296.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS71296.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS71296.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS71296.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01001318; EPS71296.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 151 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 250 AA; 28370 MW; B94900D88555D34B CRC64; MGRRPSSGTD SSSSFLKFLN DDDFDSRLKI PSRFVKKHGG VFRRGFCYLT AGGFPRRRWR VWVERLGQDH FLGDGWERFA KDVGLNLGYY VVFSCADRSE LEVSVYYTSG CRKENESGGI PATPPKIKRE EEEEEEEKVF PCGRVQRAPK SWIFSRRLTA DHMESMEIPA SFMRDTAMAA YRSVVLRGGG GGGRGVWHVT IEEIGGVFQM RSGWSNFVMD NGVEIGDSVW FKFIPGSGNE IDIHLTRKKL // ID S8D1Y5_9LAMI Unreviewed; 198 AA. AC S8D1Y5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS73345.1}; GN ORFNames=M569_01411 {ECO:0000313|EMBL:EPS73345.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS73345.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS73345.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS73345.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01000461; EPS73345.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 198 AA; 22412 MW; 881FC0C370EC15B2 CRC64; MVESSDFPRR SSFVVLINDG DFVDKLVSLF FTILFFLPSH TLSCCKRETT RSGNSPAIAI SVSSEDEDDD DDGDDDGDDD EDSGQDRVIK GGFSFVKKMT EFCIGRRLDI PRSCVNEAGI KRTMNIHLKK TNGSRRLWPV TLTYTTKWPC SLSSGGWRRF VRENDVNVGD TVRFTFRAGE NVMEVRVLKT ADEEEEEE // ID S8D2C1_9LAMI Unreviewed; 575 AA. AC S8D2C1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=M569_01212 {ECO:0000313|EMBL:EPS73545.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS73545.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS73545.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS73545.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01000399; EPS73545.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 49 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 464 547 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 49 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 575 AA; 63379 MW; 501FA19D8EA1CA6A CRC64; MGYAGQPKRH LLTTGWSVFV SAKKLVAGDS VIFIWNENNR LLLGVRRANR PHSVMPTSVL SSDSMHIGLL AAAAHAEATN SRFTVFYNPR ASPSEFVIPL SKYAKAVYHT RVSAGMRFRM HFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESAAGERQQR VSLWEIEPLT TFPMYTSPFS MRMKRPWPSV LPSVSGFKDG DMGLISSPIT WLPGSGSDRH IQSINFQTIG NAPSPFIQQQ IAAPGLGSQQ QHYHQVMAAF DEPKGSTNDE IFLDFQSNGP QIPSAQLQNG TGQPYLEQHL QNLGENHMLA GDHSSMWKIL IPFFGRHENL DAVSKRVALD PEFHSKASHF GVPNPEELVT LNSGGISNLT ALYPQLPEFR GMSSHSDGNL FGASMLSGGE VSTTGNGLGD SSLSMAAYVA PPFPSDISPS SCIDESSFVP STDDNVDRMN ENHPGFVKVH KSGSFGRSLD ITKFSSYNEL RTELARMFGL DALLEDPQRS GWQLVFVDRE DDVLLLGDDP WQILSPLEVQ QMGILATPGK TPHRFSGDYT TPRSNLNNGI PSVES // ID S8D3I0_9LAMI Unreviewed; 684 AA. AC S8D3I0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_00826 {ECO:0000313|EMBL:EPS73925.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS73925.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS73925.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS73925.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01000243; EPS73925.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 588 674 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS73925.1}. FT NON_TER 684 684 {ECO:0000313|EMBL:EPS73925.1}. SQ SEQUENCE 684 AA; 76358 MW; 6460CBCE2DDA8C77 CRC64; INSELWHACA GPLVSLPNAG TLVAYFPQGH SEQVAKSMQK EADGMIPSYP NLPSKLICIL HNVTLHADAE TDEVYARMTL QPVGSKYEQE PPPPSPFLIS DIHSKQPGEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DYSMQPPAQE ISARDLHDQK WTFRHIYRGS QPKRHLLTTG WSVFVSSKRL VAGDAVIFVR DDKRQLRLGI RRGNKQIPAM SSSIVSSDSM LIGILAAAAH ASANNSPFTI FYNPRASRSE FVIPLSKYSK ALCVQVSPGM RFRMMFESEE SGIRRHMGTV TGISDLDHAR WKGSHWRNLQ VGWDESTVGG QRTSRASIWE IEPVVTPFYL CPPPFPRSML GRNPPPCFGD GDLDFGFFRD ASSTSSMLIH RNLVQWIHDQ SKLLNARSFG GYAPPLHQGN STPTWPQHQQ QIAAYQNDVS STNRGTPLHE DLQMQFESRL FPMHHPDQMN GVSFSSPQLA SNHFLNNRTE PLQQISLTDS DVVVQPQIHN YNSTLLPSMD APAALAPDAL LSRGYDSGKD IPSYSGTPRE IDTDMSSGIQ SQSFGVPNMS YEIAAVSNGG QRCNNRIRTY TKVQKRGSVG RTIDVTHYNG YDELKRDLAR MFGIEGLLED PEKRTTEWKL VYVDHENDIL LVGDDPWEEF ISCVQSIKIL SSVEVQQMSL EGEL // ID S8D3T9_9LAMI Unreviewed; 604 AA. AC S8D3T9; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_00669 {ECO:0000313|EMBL:EPS74085.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS74085.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS74085.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS74085.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01000189; EPS74085.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 528 603 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 108 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS74085.1}. FT NON_TER 604 604 {ECO:0000313|EMBL:EPS74085.1}. SQ SEQUENCE 604 AA; 67077 MW; 268875536BB34BB1 CRC64; LDPQLWQACA GNMVQIPVIN SSVFYFPQGH SEHASENVDF SKCPRVSSYI PCRVSAVKFL ADHDTDEVFA KIRLIPVDRS EFSFDDGESV SVMGSENQDK SSSSSSSFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYT ADPPVQSILA RDVHGQVWKF RHIYRGTPRR HLLTTGWSTF VNSKNLVAGD SIVFMRGEAG DLCIGIRRAK KVFEARSGWN ASSNNSGGIM GGVFSSLIRD DETAANNGSS RRRKVKAEDV VQAVTLAANR QAFEVVYYPR ASTPEFCVNA SLVRAAMTVR WVAGMRFKMA FETEDSSRIS WFMGTITAVQ VADPNRWPDS PWRLLVVNWD EPELLQNVKR VSPWLVELAT TNVHGFPISS FSPPRKKVRL SSADSQDFSF HHHFVVPPPA HHRHHHHHQH HEMLSLSGNN ATTIAPSGIQ GARHGYSTTP VFKQYPSGAA VSQRGDESVS CLLRVGNHPD HPAAKPFLLF GQTILTDEQM MRSNDDDEDE KRGFDLNHRD RECEQQQRCE VLVESEDLVG RSLDLGSVGS YGELREKVEA AFGEANDGSS IVYSDENGAV RQLGDEPFIA FKRSARRLTI LSGT // ID S8DFZ6_9LAMI Unreviewed; 159 AA. AC S8DFZ6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS58302.1}; GN ORFNames=M569_16513 {ECO:0000313|EMBL:EPS58302.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS58302.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS58302.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS58302.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01009352; EPS58302.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 149 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 149 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 159 AA; 17891 MW; 21A38A60968A0411 CRC64; MSSSEERGVS ESETSSEMGR DSFKRKREPI SDYSDSPTEI SGEEDIKPSK LVKKNITFAK TMDVSSINYG GMHVPVSFLN EARIRSNMNI ELRDRKGGSW PVFLNYISSK LSRGWRRFVE DNGVEIGNTI LFSFEPGGNV LEATVQKNAR DDETISKEL // ID S8DGG5_9LAMI Unreviewed; 243 AA. AC S8DGG5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS58447.1}; DE Flags: Fragment; GN ORFNames=M569_16368 {ECO:0000313|EMBL:EPS58447.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS58447.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS58447.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS58447.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01009213; EPS58447.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 65 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 124 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 65 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 124 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS58447.1}. FT NON_TER 243 243 {ECO:0000313|EMBL:EPS58447.1}. SQ SEQUENCE 243 AA; 28095 MW; ED8EA3C3EEB073AB CRC64; TASKKLPSSR FKGVVPQPNG RWGAQIYEKH HRVWLGTFNE EESAARAYDA AAIRFRGGDA VTNFRDGAAD DAESRFLNSH SKSEIVDMLR KHTYEEELEQ SRRGGGSEMM IRRVPAELRR EYLFEKIVTP SDVGKLNRLV IPKQQAEKYL PFRFRLGEAA GFCRLMLLNM EDSQGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKSLRAGD TITFYRSGQP DNRLYIDCGV HRVQPVRLFG VNL // ID S8DI18_9LAMI Unreviewed; 629 AA. AC S8DI18; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_15753 {ECO:0000313|EMBL:EPS59057.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS59057.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS59057.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS59057.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01008669; EPS59057.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 541 622 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS59057.1}. SQ SEQUENCE 629 AA; 69626 MW; 1E5A0CAC300EB30B CRC64; EDVENCLDSE LWHACAGVMV QMPPVNSKVF YFPQGHAEHA LSPVDFAESS RIPAMILCKV DRVKYLADPD TDEVYARIRL VPDIGNELCT DEVYDDGGGG GSAAASGSRE RQHTSFAKTL TQSDANNGGG FSVPRYCAET IFPPLDFTAD PPVQNVIARD VHGETFRFRH IYRGTPRRHL LTTGWSSFVN QKKLVAGDSI VFWRADNGGL CVGIRRAKKN HSPHRDRAIL SRWNSAGVNG FSSSLEPDNM MSLIGSSMAD KPRVKPESVI EAAYLAVNSQ PFEVEYHPRL NTPEFCIKAS SVISAMKIQW FSGMRFKMPF ETEDSSKISW FMGTVASVQI SDPIRWPNSP WRMLQVAWDE PDLLQNVNSV SPWLVEMVVS GLPLPPPPPP LSSPFLQPRK KMRLIDFPLD ATTHYGLPSF TGRPQNSCVY LQEAISSAGG IQGARHVRIP FPQPLSTSNF LDAAARNHRP KVVPRKKNDD SSDADQNVGC LLSIGNNSHM AAAAAEKTEN QIRLFGKPIS IDRRKSSSPP SSETTTTTTT RRCCKVFLDS EDAGKSLDLP GIGSYEEMYA RLEEMFELVD DVKGRVFYCD SDDDGVVKWP GDVPYSEFAE NAKRVTVLTD PGNNDSSER // ID S8DIF4_9LAMI Unreviewed; 326 AA. AC S8DIF4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS59202.1}; GN ORFNames=M569_15607 {ECO:0000313|EMBL:EPS59202.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS59202.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS59202.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS59202.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01008560; EPS59202.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 92 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 92 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 326 AA; 36162 MW; 284C1C50A95943B0 CRC64; MEDESSTTES VSAAAPVRLL GNLVESEIES RKLPSSRFKG VVPQPNGRWG AQIYEKHHRV WLGTFNDEED AARAYDAAAQ RFRGRDAVTN FKAPAIDESE VAFLNSHSKA EIVDMLRKHT YYDELEQCRK KCDGAGKAFG GDVLAGTGVS SDRREHLFEK AVTPSDVGKL NRLVIPKQHA ERHFPKQSGS NAKGVLLNFE DVCGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKELRAGDI IIFRRSTGAD APPQLYIDWK SRSHAAGHDG RIGGVAPVVR LFGVNINSAA AAAFDGGCCC GGGKRIREID ILGFDRCKKQ RIINAL // ID S8DIS2_9LAMI Unreviewed; 293 AA. AC S8DIS2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS62763.1}; GN ORFNames=M569_12025 {ECO:0000313|EMBL:EPS62763.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS62763.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS62763.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS62763.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01005920; EPS62763.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 74 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 146 259 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 74 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 146 259 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33387 MW; 8AD0692634C81FB3 CRC64; MEKGMLSMVS FAKRFRVDRF KGVVPQQNGH WGAQIYANHQ RIWLGTFKSE VDAAMAYDSA AIKLRSGDSH RNFPWTNITI QEPKFQSLLT TDAVLNMIRD GSYPSKFADF LRSQQGETDV GGAGGGGGLN LSSLCGDGNF FCTLLFQKEL TPSDVGKLNR LVIPKRYAVK HFPTVPESDE QKQSERVGGE VQLEFYDREM CLWKFRYCYW KSSQSFVFTR GWNRFVKEKG LRENDTIAFY LYESKDGQSF IVIDVAKKDE EQHEVVGCGS SGREEDSNKR KGIRLFGVQI YQP // ID S8DN62_9LAMI Unreviewed; 720 AA. AC S8DN62; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_10340 {ECO:0000313|EMBL:EPS64438.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS64438.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS64438.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS64438.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01004821; EPS64438.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 617 700 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 720 720 {ECO:0000313|EMBL:EPS64438.1}. SQ SEQUENCE 720 AA; 79895 MW; BDAA78BCC07EA878 CRC64; MASVEENVKP GGGVSVGDGV KLLSEMQDSS ICRKQINCEL WHACAGPLVT LPQLGSLVYY FPQGHSEQVA VSTNRAATTP QIPNYPNLPP QLLCQVHNLT LHADRDTDEI YAQMSLQPVC SDKDVIPIPD FGLKPSKHPS EFFCKTLTAS DTSTHGGFSV PRRAAEKLFP PLDYSMQPPS QELVVRDLHE NTWNFRHIYR GQPKRHLLTT GWSMFVGSKR LRAGDSVLFV RDEKSQLLVG VRRAIRQQAT LPSSVLSADC MHIGILAAAA HAAANRTPFT IFYNPRACSS EFVIPFAKYR KAVFSTQLSI GMRFGMMFET EESSKRRYMG TISSISDVDP LRWPNSKWRS IQVDWDEPGC GSSDRRNRVS PWEIETPESL FILPSMASNV EKHPFHSPFL LGGAAPPTEF GALMNFQSPP PLISEELMKM LVVKPQKTSS HATTIVPNDV GVMKSAEEKA SQQCLLLANG WIQNIEDDSS MSSALEAASG WIQVEESPPP SQVDFASYHY STLPPLEGQA ELWDSSSLQE EYHHYNSDGV DVKDDLAAAA AGDIIYNCMD VDGSSIVLDE ICGKNNSNHQ DPSSQDVQSS AGTDSRNFNH NSRSTSWHHH QLTPRFRTYT KIQKAGSVGR SIDVSGFKNY EELRVEIERM FGLEGVLNDM RSGWTLVYVD FENDVLLVGD DPWEEFVGCV RCIRILSPSE VRQMGEEGMQ LLNSVGGIGM // ID S8DP31_9LAMI Unreviewed; 482 AA. AC S8DP31; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=M569_13339 {ECO:0000313|EMBL:EPS61457.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS61457.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS61457.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS61457.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01006831; EPS61457.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 482 AA; 53062 MW; FBF7169E94D478AE CRC64; MVTPMSSSEK CLNSRLWNAC AGALFRLPDV NSTVVYFPQG HAEHAVSAVD FGPLLPRIPP LVLCRVDSVK PSADPETDEL YVRMRLIPVE PSSFYAFDDG GESPASDSGE RLQPFVKVLT QSDANNGGGF SVRRNCAESI FPPLDYKADP PVQTLSATDI HGTVWNFRHI YRGTPRRHLL TTGWSNFVNQ KKLVAGDAVV FLRDENGHLC IGIQRARRDS AAAWIYDKKA ASENGKVDPD AVFESAASAA DGRPFEVVYY PRAGTPEFCV KSSTVKASMR TNWCAGMRFK MPLENEDSSQ ITWFSGTISN VHYSDPKWPY SPWKLLQVTW DEEPDSCEDL RRVSPWMIEV VSSMSFLPVS PSSSPLKKLR VLHSTGFLPI DGPPSFSVDP PPVFRSNAAA ACCLIRPSEE VTATPGIQGT RQLTTDELMR TEVLDNKSSC VTDENNEDGS PEGKKEEPIL TQEQMSAPPA DREPPGTGPL SF // ID S8DPQ2_9LAMI Unreviewed; 632 AA. AC S8DPQ2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_13014 {ECO:0000313|EMBL:EPS61777.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS61777.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS61777.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS61777.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01006594; EPS61777.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 73 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 617 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 73 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS61777.1}. FT NON_TER 632 632 {ECO:0000313|EMBL:EPS61777.1}. SQ SEQUENCE 632 AA; 69970 MW; 2E4EE6C0876FDCCD CRC64; DYSLQPPTQE LVVRDLHDNT WTFRHIYRGQ PKRHLLTTGW SMFVGAKRLR AGDSVLFVRD EKSQLLLGVR RANRQQATMP SSVLSADSMH IGILAAAAHA AANRTPFTVF YNPRACSSEF VVSFAKYRKA VFGTQISVGM RFGMMFETEE SSKRRYMGTI TGISDVDPLR WPNSKWRSLQ VDWDEAGCGD KRNRVSPWEI ESPENLFVFP SLSSTVKRPF RTAFPGAQPE WGALLNNSSS SRPSDLPGPT ISSGPWSEQL LKFVMRPQSN CMFVTPNGIV MQEPIEAQMN SQCAASDVGV SERNNSSMLP LQAGGWIQAT KIESSSTPNP VLLQYPGPVD FASYPPPLCS NSTGSFRNVG SPCPSRKLDH HHHSESSENG YIPPLPQEGH HQLWDSQPDM PNFQYSSSVL KDLMSENTNQ GDIYSCLNLD GSNNSGSSTV IDPSVSSLVA LDDICAKNGD FQSPCGYFLG NISSNQDVQS QMTSASLADS QNNFSVAEYA DNSGGASSSN VDFEENNILQ HQPSWHHQVA PRFRTYTKIQ KAGSVGRSID VSGFKNYDDL RSEIERMFGL EGFLNDLSSG WKLVYVDFEN DVLLVGDDPW EEFVGCVKCI RILSPSEVKQ MGEEGMQLLN SV // ID S8DSM7_9LAMI Unreviewed; 82 AA. AC S8DSM7; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 12-APR-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS62827.1}; DE Flags: Fragment; GN ORFNames=M569_11961 {ECO:0000313|EMBL:EPS62827.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS62827.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS62827.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS62827.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01005863; EPS62827.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 78 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS62827.1}. FT NON_TER 82 82 {ECO:0000313|EMBL:EPS62827.1}. SQ SEQUENCE 82 AA; 9676 MW; 631C9F6331153850 CRC64; QIDGSKLCYL FKKQLKNSDV SALRRMVLPK KEAEAHLPFL DIKEGIHISM LDMDGIHHWT FKYRFWPNNS SRMYVLESTG TY // ID S8DX33_9LAMI Unreviewed; 678 AA. AC S8DX33; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS64487.1}; DE Flags: Fragment; GN ORFNames=M569_10291 {ECO:0000313|EMBL:EPS64487.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS64487.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS64487.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS64487.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01004797; EPS64487.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 100 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 245 346 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 477 527 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 245 346 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS64487.1}. FT NON_TER 678 678 {ECO:0000313|EMBL:EPS64487.1}. SQ SEQUENCE 678 AA; 75274 MW; D2A55260AB80604A CRC64; AYENSIFCET FHSEESGWRE CKFCGKLVHC GCIASRYLYE FMDFGGIGCG SCAKRIELQS GQTLQVVIHI YADGRSFSSF FFVVVVLSNA IGITSITSAF EQHKLENEKQ RMTGLSEPYT PSIFLGNRAK QGPKNIYETL AHSPLNFSLS SPSSNSALPF HGKIGEGSEP SSKASFKARL PKLPKQSILS GGETNKGSGS QGRVPRPPAE IRGRNQLLPR YWPRITDQEL QQLSGDLKST IVPLFEKILS ASDAGRIGRL VLPKACAEAY FPSINQSEGI PIKIQDVKGK EWTFQFRFWP NNNSRMYVLE GVTPCIQNMQ LQAGDTVIFS RRDPGGQLVI GCRKATNKFE LPVIFFRKKK LTVTSFAKDP LSPAVLHGDA STEALLTSSA DKLPSVSGED SPRHTEKKKS KNIKNKRLLM HNDDAVELRI TWEEAQELFR PSSSVQPTVV LVEGHEFEEF EEPPLFGKRT VFISQPSGEQ EQLAQCDNCF KWRRLPANAL LVANWTCSNN IWDSSRCSCS VPEEMNPRDL DFRGGVSYDN KKQRNSDAKV ASEMEEPTGL EALATAAVLG DNVDVGESSA SATTRHPRHR PGCSCIVCIQ PPSGKGKHEP TCKCNVCLTV RRRFKTLMMR KKKRQAEDPP PQQQPQNASK ASRVESRNES EEAVVGKKSS QLDLNCDP // ID S8DXB4_9LAMI Unreviewed; 139 AA. AC S8DXB4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS67918.1}; DE Flags: Fragment; GN ORFNames=M569_06855 {ECO:0000313|EMBL:EPS67918.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS67918.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS67918.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS67918.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002859; EPS67918.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS67918.1}. FT NON_TER 139 139 {ECO:0000313|EMBL:EPS67918.1}. SQ SEQUENCE 139 AA; 16052 MW; EB05D2E536818D76 CRC64; KRTRFFDLYD DDEARYSVIE RAGELLSGLE NDLPHFVKFM LHSNVGQGFW LHLPKKFCEA HMPDHDTNVS LVNEWGKEYR ATFLLGRYGL SAGWRGFSIS HRLLKGDILI FHLIQPCKFK VHIVRANKSD VMGAALCLM // ID S8DYX1_9LAMI Unreviewed; 164 AA. AC S8DYX1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS68508.1}; GN ORFNames=M569_06260 {ECO:0000313|EMBL:EPS68508.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS68508.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS68508.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS68508.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002577; EPS68508.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 86 142 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 164 AA; 18793 MW; 44CF49A81A392208 CRC64; MVSKNFSKNT RNLFLDDYED ISSESLGFIL VGTTGRFDRT NFILTKVVKL ETKDDLNILR LNAAETVTIV GDISPISFPE DEYARNLTVY DKTNESFHVT LVGEPASDYR NRAFFLTGGW NRFVWYNDLK TGDVIEFYKI EERDEAGRSC YVVNCIKGKN NGEE // ID S8E5K5_9LAMI Unreviewed; 451 AA. AC S8E5K5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS67642.1}; GN ORFNames=M569_07135 {ECO:0000313|EMBL:EPS67642.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS67642.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS67642.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS67642.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01003004; EPS67642.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 353 450 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 353 450 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 451 AA; 50649 MW; 2F9B468998C21794 CRC64; MAKRRDFTSD DSPLELIQGR QDDPSSSCAV TRFFQVMIGD DLSKVLYLPS AFAETVMHLA GQVVQLEDSS GLRWDVLLRF TGGSLFFDRG WCKFFSDHSI KEGEFLVFDF VKKGHFVVHI FGTTATERTG FDHGGDPQTS SKRPTDRTFS DADTTRGPEI SGRVVKSEIN GLPENLPGTM QNEDPVCMVV RDNATGFHGE NRGFLFDLSS FETGKQPSEA ECVTDFNKIN NVVAGFRRGF PSTSKKAEAF TDKFAITSGK TDTNPLPRRS EAAVPQRIQR FEKSEMKKAP TDFSRVDNRK YFIEKTPLKR QKFEAPSPDH TNDHHHRSAQ RLLKVCPKKE MDARNSVQAA ESVETNNAEC QVKSLAYLVV PVSVVGMSRR RDRASKRHIL RLRDSMGRLW PVLMADMVTV RALTSNWTNF CKFNGIRLGD GLSFHHQEDG SYAVTVTTPA L // ID S8E6B6_9LAMI Unreviewed; 339 AA. AC S8E6B6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS67917.1}; DE Flags: Fragment; GN ORFNames=M569_06854 {ECO:0000313|EMBL:EPS67917.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS67917.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS67917.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS67917.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002859; EPS67917.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS67917.1}. SQ SEQUENCE 339 AA; 38369 MW; A908461422C96ECA CRC64; LDSHAVVQVN PPSQYPSFLK QLLKSHLSGK FYLGLPKKFC DEHLPSHDGT VILVDEDGQE YSTRYSFRKN RISGGWRGFS NAHKLMEGDS LVFHLLEPCR FKVYIVRACK ASENSVSMVE LPIPDSKKNP LPDPVETEHR VGRVHPTKRK RLIPDDKPGN AITLFNPNVI QSIRNSVPDA KFKDVNDFEA FSIRLDGLIL DSQIPIDVRT RYYYLCCSQK ICNLAIVMIA ETVVIADAIR SSSLSISLHQ LECWEKTLKA FDDLGMVVGF MRSRLHRLIG LSHEYQSNAE TRRAKLAQTE SPWSSMKLLA QNLEAEVKSL VSKNDMISLE FQQVAGAPW // ID S8E740_9LAMI Unreviewed; 330 AA. AC S8E740; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS68232.1}; DE Flags: Fragment; GN ORFNames=M569_06539 {ECO:0000313|EMBL:EPS68232.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS68232.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS68232.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS68232.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002706; EPS68232.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 97 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 162 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 97 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 162 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS68232.1}. SQ SEQUENCE 330 AA; 36555 MW; 92D3511D84C52A7B CRC64; LLGMKEDSSV SDSVSAAAAA AAARAVPMEG ETEESRKLPS SKFKGVVPQP NGRWGSQIYE KHQRVWLGTF NEEEEAARAY DTAAQRFRGR DAVTNFKPLS ADESEILFLN SRSKPEIVDM LRKHTYQDEL EQSRKNSGGG GFRGDFLAGG GRAAADHREH LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGSNTKGVL LNFEDMAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKDLR AGDIVTFQRS TAPDKQLYID WKSRNDGLSP AARVQPVQVV RLFGVNIFEV PTGGPTSAAA VFDGGCCGGG KRMTEMEFDC AKKQRIINAL // ID S8EAP5_9LAMI Unreviewed; 152 AA. AC S8EAP5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 18. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS69612.1}; GN ORFNames=M569_05155 {ECO:0000313|EMBL:EPS69612.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS69612.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS69612.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS69612.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01002047; EPS69612.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 152 AA; 16777 MW; 9FCBF95D61B56F59 CRC64; MSEEEKHPLF EKPLTPSDVG KLNRLVIPKQ HAEKWFPSPV LGGYGGPVAG DRGLLLAFED EAGLTWRFRY SYWNSSQSYV LTKGWSRYVK EKKLDAGDIV CFLRHRENVG RLFIGCKRAA AASRSSATAA GHPYLGISSL HPSDCSSHAA GK // ID S8ED77_9LAMI Unreviewed; 122 AA. AC S8ED77; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EPS73908.1}; DE Flags: Fragment; GN ORFNames=M569_00849 {ECO:0000313|EMBL:EPS73908.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS73908.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS73908.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS73908.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01000252; EPS73908.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS73908.1}. FT NON_TER 122 122 {ECO:0000313|EMBL:EPS73908.1}. SQ SEQUENCE 122 AA; 14303 MW; 77CA5152CA93D284 CRC64; LTGKPFFEVV ITKQNIQRPS LLYVPKQLYD QLPRRQIPMI IRSTDKIWDM QYVGNGDHPR FGHGWKNFLC DNDLRAGDGC VFELMKFNEK KIEFRMILLR NEEPDELRAV ATSRGSLVDH PI // ID S8EFZ1_9LAMI Unreviewed; 482 AA. AC S8EFZ1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 22. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=M569_03184 {ECO:0000313|EMBL:EPS71572.1}; OS Genlisea aurea. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea. OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS71572.1, ECO:0000313|Proteomes:UP000015453}; RN [1] {ECO:0000313|EMBL:EPS71572.1, ECO:0000313|Proteomes:UP000015453} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23855885; RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., RA Kondrashov A.S., Logacheva M.D.; RT "The miniature genome of a carnivorous plant Genlisea aurea contains a RT low number of genes and short non-coding sequences."; RL BMC Genomics 14:476-476(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- CAUTION: The sequence shown here is derived from an CC EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is CC preliminary data. {ECO:0000313|EMBL:EPS71572.1}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; AUSU01001193; EPS71572.1; -; Genomic_DNA. DR Proteomes; UP000015453; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000015453}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015453}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 138 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 138 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:EPS71572.1}. FT NON_TER 482 482 {ECO:0000313|EMBL:EPS71572.1}. SQ SEQUENCE 482 AA; 53907 MW; 1C96FD007017FE0D CRC64; GLIDLNTVND EDDDASLSAS PESTTRSLSE VCMELWHACA GPLISLPKKG TPVVYFPQGH LELLPEHSAV AYDLPPHIFC RVLDVKLHAD ADNDEVYARV SLIPDHQIEH EWREGMVEPE AEDEDPNSNV KAMTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGTEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRHMKF LTLRFTVNNV AVNGSGDGEL RLGIRRAVQV KSGGASSVLA LNSQLFNSCI STVANALSAR STFEIFYNPR ARSSDIIVSY GKFARSLMQS FSCGMRFKVP YETEESSERR NSGVIVGVSD VDPSRWSCSK WKCLQVRWDD LEVNCIDRVS PWEIELTSPV SGGPPPGFAL AGTKRNRIGF SATAKPDHLP PGFLLPDFRE ASRYHKVLQG QEIFNFRNRY PGGDGRRCYS GLRIGPFDES FQFQKVLQGQ ET // ID T1L7M3_TRIUA Unreviewed; 721 AA. AC T1L7M3; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_00423-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_00423-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_00423-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_00423-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_00423-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_00423-T1; TRIUR3_00423-P1; TRIUR3_00423. DR Gramene; TRIUR3_00423-T1; TRIUR3_00423-P1; TRIUR3_00423. DR OMA; YLEECTG; -. DR OrthoDB; EOG093612BT; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 195 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 606 703 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 105 195 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 606 703 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 63 100 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 721 AA; 81315 MW; 52B649E9AF800B50 CRC64; MGMIDDKQNV KVKEEGGENT NAKEKKKQSK EEGDKKKEVK KMTKYKEKKE RTRGNDKDNE KEKEDQRKRK ENEKKMRAHK EREKKENDKE EELKEQNDTK NCPQFFRFLM TSSSMEQETI PEDCHKYLEE CTGTVSLRGP SGNLWPVELA KISGELCFAR GWKEFLCDHR IVYGYLLVFR YDGNSQFSVT VFLPSSCEAP YAFLAQPQRM GATAVAAKDE NGHTGTNADG TAPQEEDSHI GTGADGTPQN EGEEEDASEE YEGSDNMSVD ADGAGPQKEE EDALSENPDN EEESEWRSAP SQQQKEDQDK IDNGFVVGKR TRFRKVDDIM TEVVRSKKSK AKEGKRHEAQ SSDSKSEGEA LGDSLEKSGL RPPRKSKATE EKRPEAPSGD SLAELVHCSP KKSKAEGKRS TALASKGAAS SDRLKESKRC PPRKPKAAKG KRPQGPCGHS ESEGAESGDS LAELVRRPPK KSRAEGKGSA ASSASKGMTS SHSLAGVLAP ESVCKDLTKL HKSFGKKYSM KAQFPMFNNS NSENQPGRVI VKVQRRPELK SQRRQVTQRD KEYAMDRAQR FQSKRPFVIK EIKHTDVYVS YFMVIDRILL WMDTHILKLH CSLTDRPGTL QIIPEMFVEN FLPKESRKMT LWDPQAKPWK VWYEYTGGEC PRAAFSAGWG ALAMENYLEN RDLCVFELLD DDYNIKLHVY RAVLDITPFA LAPKHHQQGC A // ID T1LAJ2_TRIUA Unreviewed; 214 AA. AC T1LAJ2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_01515-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_01515-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_01515-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_01515-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_01515-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_01515-T1; TRIUR3_01515-P1; TRIUR3_01515. DR Gramene; TRIUR3_01515-T1; TRIUR3_01515-P1; TRIUR3_01515. DR OMA; NHQRRHI; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 41 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 41 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 23174 MW; 91543DF720873845 CRC64; MEFTAIRASA AAAGGCSSPP PAADHKAEEE AAGPVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD ASSTDKGLLL SFEDRAGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTQHYHHQH QSLVLESVPV RMAAAPGHPE PSAVATSGSK RVRLFGVNLE CAADAEEDFS GHGRTATTAL QLLSPASSSS SSCGKARCSL NLDL // ID T1LBX6_TRIUA Unreviewed; 673 AA. AC T1LBX6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_02033-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_02033-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_02033-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_02033-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_02033-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_02033-T1; TRIUR3_02033-P1; TRIUR3_02033. DR Gramene; TRIUR3_02033-T1; TRIUR3_02033-P1; TRIUR3_02033. DR OMA; EDENINM; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 560 657 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 143 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 560 657 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 37 72 {ECO:0000256|SAM:Coils}. FT COILED 94 130 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 673 AA; 76659 MW; 21E7667FCFBB1467 CRC64; MGVVDNMQNV KVKEEEDENI NMKGKRKQNK AEGGKKAEEK QNSSKRKMDK NKEEKEKKMR VVDKNDDEKE REDRSKRKEN EKKVKSHMER NEDNDNKKEE QGQREIEKEK VEEEKEINKQ KGRKEEEDSK EKDKDQNDKT NCPHFFRTLI SYSFMEHMTI PVGFHKYLED CTGMVSLRGP SGNKWPVELA KISGELLFAR GWKEFLSDNR IGYGYLLVFR YDGQSQFSVT IFLPSSCEDP YAYLAQPQCK DVDWHQCTNV DGVAPQEEDT HSGTSADGAP QNEASEEEDA SEDEDAEEVE DALSETPGNE EDSECRMCND DALEPVQQQQ EDLRKTDDGF LIGKRARFRK VDDIMAEVDR SKKSKPAERK NSEGPFGDPT SGGGASSDSL AEESEHRPPK KSKAGEIRSP SGDSPSKAAT SSDNFAELDS HPSKESKAEG KSSAPSLIGY TGSSSSASKS VPLKKASKET ISNDNLAGVF APESVCTDLT MWHNSFGKRL SKQNQFPMFN KSNGENQPGR VLIKVMRRLG LMSQRRPVTQ REKEYAMERA HRFKSERPFA IKAMKHNDVY ASYFMIIPDK FVKTFLPKES RKMTLWDPQA KPWKVWYEYT GGERPRAAFN AGWGALAMEN NLEKWDVCVF ELLDQEYNIK LHVHKVVLMI TPCILAPKPR IDE // ID T1LCN0_TRIUA Unreviewed; 314 AA. AC T1LCN0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_02309-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_02309-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_02309-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_02309-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_02309-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_02309-T1; TRIUR3_02309-P1; TRIUR3_02309. DR Gramene; TRIUR3_02309-T1; TRIUR3_02309-P1; TRIUR3_02309. DR OMA; ANEHGDM; -. DR OrthoDB; EOG093601C8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 153 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 153 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 34468 MW; 6C45ECF94896DDAD CRC64; MAVWVLRWAM DVGRRRPFFF LVGGRSCFAR ADGPAAVLDR DTETAEMAQG SPDLAGFQFY KLMAAGMSWE KLVLPDKFVS ELNGLELRGV KLRVDGGGAR AWDVEVVANE HGDMHLGRGW KEFVRANGIE LGQLLVFCYD GAALLTVKVF DDSECGRHCC QREEEDDSAE EEESPPPALP GSGSSSSDGV VHGGGGGAAP SRFTVTLGQC HLGTKKKQYL NVPVEFSQSH GFTEKGRVVL RMRGQQWSVC LKHSNRRKGN ARTRTALRYG WNQFRVDNGL RVGDICFFQL LQDAGGDDPV LSVEVRKADG TIVQ // ID T1LER8_TRIUA Unreviewed; 372 AA. AC T1LER8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_03112-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_03112-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_03112-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_03112-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_03112-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_03112-T1; TRIUR3_03112-P1; TRIUR3_03112. DR Gramene; TRIUR3_03112-T1; TRIUR3_03112-P1; TRIUR3_03112. DR OMA; QNGNNEH; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 212 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 306 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 160 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 306 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 42213 MW; D58BD8C8122D9F56 CRC64; MGLSSNCAKT IKIQQCVKLP DSKYLHINDE LAGCFGTEDH GDGRTALVLS PFGKNVWPVK FVAAHGIGVG WYLVIRHEGC GVLTLKAFDA SFVIKEFGLT ITVLSPAEIE NAFARKPQFI VPLQRSFMEK MPIPPEFLQR GYISEEDLNR PRPIATFLTS WHIELKKDGP NVFFTGSEWP KFLAYFEIAE TDVLLIKYQG CMNFSFETFQ NGNNEHIEEK TSSSQQSEQS PGAQSQEEEH VCSRKRKQSE VKSMLDGSTT SQHRKKALCE LGSTGSQAWL RKEINELALK RYLHFPARFG FLERCKITLK SVERNKSWEV EGVNYHPGTS RSYNCLTRGW KAFCKENELK AGDICTFKVV NSTLWHVVID HC // ID T1LF92_TRIUA Unreviewed; 112 AA. AC T1LF92; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_03303-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_03303-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_03303-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_03303-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_03303-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_03303-T1; TRIUR3_03303-P1; TRIUR3_03303. DR Gramene; TRIUR3_03303-T1; TRIUR3_03303-P1; TRIUR3_03303. DR OMA; HDANIVL; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 112 AA; 12882 MW; B0963BA05FBBC8A3 CRC64; MAEELQAKLG SRYPSFVKPM TQSHVTGGFW LGLPLPFCRK HLPKRDEKLT LKDEQGVESE SLYLALKNGL SAGWRGFAIQ HNLVDGDCLV FELINRTMFK VYVIRQSSYY ER // ID T1LHP2_TRIUA Unreviewed; 478 AA. AC T1LHP2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_04208-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_04208-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_04208-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_04208-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_04208-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_04208-T1; TRIUR3_04208-P1; TRIUR3_04208. DR Gramene; TRIUR3_04208-T1; TRIUR3_04208-P1; TRIUR3_04208. DR OMA; FEVHISD; -. DR OrthoDB; EOG093613WK; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 79 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 411 473 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 79 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 411 473 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 478 AA; 53584 MW; AB1CFD0BDF02F6C8 CRC64; MDMNGANQGC GEDCDAEGCE CGADGCQECE WWRLHCYWSH AGDHPRQFSL VAGDDFADHM RIRPPVASHL RNLISEFEEI QLEAPDGRVY PVKIGWEFGD IVLRSGWHDF VKVHHIEQNS SIRFVYRGNS SFEVHISDSP GHGNSSPPPP RDCHVPNEQV VPDPAHVQTS INIDYTAFPG TRLSHEQEKK VLELAQRSMR SEFRLHVAAV NKRNANGDCH VYIPLTLLDS VKEGITEAPI QLKAHSNDMI YVVGASKHGD DQVILQSKLS HFVDGHRMQD NDLLVFRSKG KAQLEVLVLD PSGCEKSWFD TGNSSNVSRE GRRAHAQNTA STSFGWAKSG LQARESNEAG LQAPRSNNYI STQSTPLHSQ QKEKVEERVR AIGSQFPVFV KVVSSSEVVT KTSLPGRLRL LLDGDDRDWD CMLGLRKSNK TWWIDRAWPK FISDVGLEED DICLFELTDT SSLTMKVHVI RKSDIPAP // ID T1LHQ0_TRIUA Unreviewed; 285 AA. AC T1LHQ0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_04216-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_04216-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_04216-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_04216-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_04216-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_04216-T1; TRIUR3_04216-P1; TRIUR3_04216. DR Gramene; TRIUR3_04216-T1; TRIUR3_04216-P1; TRIUR3_04216. DR OMA; DPQFPSF; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 184 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 184 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 285 AA; 31769 MW; D281ED4CB45008B0 CRC64; MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT YAPKTPSPMK HKRRRVIEAA TPVPSPPRRS RRLAHLPEVK YADACAELFV LPSAAHTVIA SAACCRTGDD FSSLFLSVEL SLSIYYEAVG EDSERVGRWS PRRRSGSIYL AGGGGGPISM KARMEAASKA EELESQLDPQ FPSFMKRMLH SHVVRGFWLG LPSHFCDTYL PKNDCTITLV DEKDEEFESK YLAYKKGLSG GWAGFALDHV IRDGDSTVFQ LIKPTTFKVH IIRAAVGDDD NEEME // ID T1LHS1_TRIUA Unreviewed; 870 AA. AC T1LHS1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_04238-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_04238-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_04238-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_04238-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_04238-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_04238-T1; TRIUR3_04238-P1; TRIUR3_04238. DR Gramene; TRIUR3_04238-T1; TRIUR3_04238-P1; TRIUR3_04238. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 248 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 544 594 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 248 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 870 AA; 96080 MW; 7279A0C376D4DF40 CRC64; MKNPGPQPVS CQVAPKLFLP PPNNQRLFGK SDELLPGRPL ESPSLMLDSR SDDIAIITKS NHPFMVKNLE IGQSSNILRQ KEIENGARQI KWEQPTLSIG DMGRMPFLIR PQSALESPQS QCTRRDDNRD PTADSTTSES ISEAGLSMSL GIANNGNKME ATSTMERPMV SPTTPFSEGR ELATTLSPFQ HAQRARHFLT RPPRVAEGAA FDPMRDGFPH LRVARPPAEG RGRNQLLPRS NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGRPLTIQDA KGKEWHFQFR FWPNNNSRMY VLEGVTPCIQ SLQLQAGDTV TFSRIEPGGK LVMGFRKATN TVSLPVSLNF KAIRLTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIATG SLLGDSFFSN TNENLSIVSG YSGFLQSMKG AADLQPSSLF DHHANSADGD VSWLKADRFG GRPDEGSFQF LHKRSRNIGS KSRRLLMDNE EALELKLSWE EAQELLRPAP SAKPTVVMIE DYEFEEYDEP PVFAKRSIFT SRSTGEQDQW IQCDDCSKWR RLPLNVIIAS KWRCADNTWD PKSCSCSAPE ELAHKELQSI LQQYEEIRRR KSNYFLKQSI PEMDASSLDA LATAAVFGEV GNQGAASVAT TTKHPRHRPG CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR RRFKTLMMRK KQRQSEREEA EASKRIAWVG RDEPEGSNLS RSPQTVDTAR DCDVIMFDKA DANKGHIDLN FHPASREEEQ QHGGQPRVSM VSLLEVANRP LESYMKQNGL VSLAAEQGSS SGTATVPSQP APMESEERPS DEGRAVAVEQ EREPVDNMAV DEAACENQGN AASASDIAAT // ID T1LL65_TRIUA Unreviewed; 323 AA. AC T1LL65; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_05541-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_05541-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_05541-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_05541-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_05541-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_05541-T1; TRIUR3_05541-P1; TRIUR3_05541. DR Gramene; TRIUR3_05541-T1; TRIUR3_05541-P1; TRIUR3_05541. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 179 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 179 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 36351 MW; 43439CAE67D668B8 CRC64; MATAEVNGVG LEFLSDPVDR FPLPDLGSDH LMTTGEPTSA QTESTTESSM GDVGDPSIRM ELALKPAGEA LSLTPVDPQP STGKEDAEVP GWTRRDETSE TFEWVFNEFI RMIGGKHPQT ILTDNWCRRS ARPRGPASSG GPGPGAPQRD YQRAAAVAAA KQKAEELQRR IHGIRWPAFV KPVTHDCASR AAVMTIPKHF IEYLPAHDEA VVLVDEADDE FHMLYNARHH FLRKGWRGFA AHHDLADGDC LVFQLTERTK FKFVREAISS LMLEIRLQLQ FRHVESSHSW SRQRKKGIAS WLRSTPDWWV PIPDRRPGWD LRS // ID T1LL66_TRIUA Unreviewed; 405 AA. AC T1LL66; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_05542-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_05542-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_05542-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_05542-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_05542-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_05542-T1; TRIUR3_05542-P1; TRIUR3_05542. DR Gramene; TRIUR3_05542-T1; TRIUR3_05542-P1; TRIUR3_05542. DR OrthoDB; EOG093618QH; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 2.60.120.330; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR027443; IPNS-like. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 295 389 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 295 389 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 405 AA; 45512 MW; A9B42C468B88A86F CRC64; MACSVRHCLR HRSCRLVVSG ASQQPTGPGR SKTLDDLHEY TSRSKRIKYD ILRAMAKLLE LDEHSLVHQF SDRALTYARF NYYPPCPRTL PLTMQHIADH VTILAREGKN YSWSRGRAGR GRPRGCPAGS WAGAIWRTCA TLRGGRAASW APATSIVQGG DCPVEWREVA VQEDGVGAMV TQGRDAPGRG EADSFLICDQ NCVIVEGRGT GRFRSVGLIK RKAPGPGELR RSGRVAGLPE QPNYLKGAQQ RDYEEVYAAY DARIWKGPTD EQRAAAVAKA EELRRRIHRI RRPAFVKTMT HVCASRAKPM MIPTHFIEHL PAHDEAVVLV NEADVEFKML CSASKQGRHR YLSKGWREFA VHHDLENGDC LVFHLIESAM FKVYIFRANP DYESDQTSDD SEDEQ // ID T1LL68_TRIUA Unreviewed; 275 AA. AC T1LL68; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_05544-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_05544-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_05544-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_05544-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_05544-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_05544-T1; TRIUR3_05544-P1; TRIUR3_05544. DR Gramene; TRIUR3_05544-T1; TRIUR3_05544-P1; TRIUR3_05544. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 164 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 64 110 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 275 AA; 32208 MW; 81EA5BD67CE349D7 CRC64; MERMASDLAR LLDLGASEAG DATKEAAKTA PGVGWHQESR MGHWRGSMEA ELHFVAMEIS LRRRRRRRRR RRKKEEEEEE KQKEEEEEEE EEEEKKKKKK KEEEEEEESL PEQPNYLAGA KQRDYQGLYA NEVWKGATDE EKATAAAKAE DLQRQIHQIR WPAFVKPITH ACASRANFMT IPKQFTEYLP AHDEPVVVVD EADDESHMMY NASRQGRHCY LSKGWREFAV DYDLENGDCL VFQLIEIAKF KVYIFRATPD YESDQTSEDS EDEQK // ID T1LLQ7_TRIUA Unreviewed; 576 AA. AC T1LLQ7; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_05747-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_05747-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_05747-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_05747-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_05747-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_05747-T1; TRIUR3_05747-P1; TRIUR3_05747. DR Gramene; TRIUR3_05747-T1; TRIUR3_05747-P1; TRIUR3_05747. DR OMA; ERRVHIF; -. DR OrthoDB; EOG093606KB; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 85 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 509 573 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 85 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 509 573 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 576 AA; 64667 MW; ECE46084607DD6C2 CRC64; MTRRSSLLWL RGGSGTACIL FLTMLCNTWP FLQHSPAIGR KEEDLCIPWE VANHLGSMIS ETIKLEAPNG IFLIGVCRKT GELVLRAGWD KFVAMHHIKE NYSFWFVYRG NSTFKVHIFN SNGHEKATSC SKPPSESFGG VPPAATCDHH VLNEQVPSVS GNVQTSTDSG YSMLPGCHLT KAQDDKVREL ACTMRSQVPL YVAVMNKSNV NLKDCSVNLP LKLVEHFKED TSKATIQLEA PNDMIYGVEA CKHGDDQIVL QYGWNNLVDA NRIQENDLLV FITKGTKRLE VRILGTSVHQ RTSSCFDVGN ISSTQEIRED SLEITDPPPH TDYYVSSSDD DHIMEEGYYV SSSDDDHIAE EDYVSSSDAD HIVEEGTRKS GRRQKQAPSR YAKAQKVAST SSPSAAKSGY EAHKLNERAS VEFGINLEPH SSTSNLEGPS QYPYVLSEGR TSLSSVEKEK VEEKVQAIQS ELPIFVVVMT KSRINADQLG FRMEYGARHI PHIGRKMDLM LQAEGGTEQR TRLVIDQNGK RWIRRGWQQF VTENKVREGD ICLFERGEST KKLRMTVYFI RKSSQT // ID T1LM33_TRIUA Unreviewed; 531 AA. AC T1LM33; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_05886-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_05886-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_05886-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_05886-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_05886-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_05886-T1; TRIUR3_05886-P1; TRIUR3_05886. DR Gramene; TRIUR3_05886-T1; TRIUR3_05886-P1; TRIUR3_05886. DR OMA; LEYASAC; -. DR OrthoDB; EOG093613WV; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 430 531 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 430 531 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 59787 MW; 3DA5E969EB29708B CRC64; MDTDEFFNPG GAGTAGDGCD CGDCEERRHD HGRTKHFVLF TSDNKDFLCI PWEVTRQLRN MIAHSEPIKL ETPDGHVYSV EFVKFGLITL TTGWRHFVDA NHIRQGDPIT FVYCGRSTFK VHFKGTSSGH KNSLPSSQQP PNIFRAIPPR DHHVLNEQVV PDPAHVRTST DFGYTMFPGT CLTKAQEKKV LELADSSMRS EIPLHVAAMN KRNANEDYYV YIPLGLLDNF EEGITATTIQ LEAHGNGMVY FVAASKQRDD QIILESELSH FVASLRIQDN DLLVFRSMRK DRLEVFVLDP IGCEKTCFAM GNSSNAREVR EDPVEIVDPP QHTVIDLSSD DDEVVEKGTA TSRGEQRPLR GYRAEAQKMA STSSRRTKSG HKADKSKKAS LEAPMSNKPY ISTSGTKLTR RQEEKVEEKV QAIGSEFPVF VKVMNERDVW SPKRLSFSLE YASACRLPLE QTHVILGLEG SNMKWSSRMV AQKHKDVRHI SSFWKDLVLL AGMKVGDICL VELADRSSES LTMTVHLIRK L // ID T1LND1_TRIUA Unreviewed; 330 AA. AC T1LND1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_06365-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_06365-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_06365-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_06365-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_06365-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_06365-T1; TRIUR3_06365-P1; TRIUR3_06365. DR Gramene; TRIUR3_06365-T1; TRIUR3_06365-P1; TRIUR3_06365. DR OMA; HFISTIR; -. DR OrthoDB; EOG09360ESJ; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 237 330 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 237 330 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 330 AA; 36553 MW; 4657BCE626F35805 CRC64; MASDSNRKAP CGKPQFLKVL FTDFMEKMPI PAKFMRRHLA AEPGLRRATL MSPLGKFWHV DVVRDGHGGD SDVYFAGGWA EFVRANRLEE ENFLVFKYEG NMVFTVKVFE TSGCIKNYDD LVFAGALLEQ AAPRKRSSTG CGSQPTSKGH GGTHAQKTRK VSDRSLTGDG AIQAKKQYKP RRILMEENDG EQDATTEKYA QADTHSGIAT EAKESDYTGT LPFYAKTATP CNIRYSYMAS SLAGSKSNLY SLNIGKKFCV MNGIATNRLM ILKDSGGRSW PVKLTLTSDQ ARMKAGWGHF SGHHGIKVGD LCVFHLVDEH TFNVSIRRAE // ID T1LNZ7_TRIUA Unreviewed; 1337 AA. AC T1LNZ7; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_06598-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_06598-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_06598-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_06598-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_06598-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_06598-T1; TRIUR3_06598-P1; TRIUR3_06598. DR Gramene; TRIUR3_06598-T1; TRIUR3_06598-P1; TRIUR3_06598. DR OMA; PFYNHLE; -. DR OrthoDB; EOG093601TN; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043531; F:ADP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR002182; NB-ARC. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02362; B3; 1. DR Pfam; PF00931; NB-ARC; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF52058; SSF52058; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1160 1265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1160 1265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1337 AA; 151977 MW; 8C4C42C1EA763C59 CRC64; MRMGIDLTDE DEDEEPDLRK RKSLVRSAFI YDPTTATFSD PVALQRVANS TVLEESFLLT TSDISMLFDG SVSASLGAMR PLVEKLDMLL ASAQEYSSLP KRIKDGMQLL KHDVEVISFY LDELTEVEDP PPMAKCWMNE AHDLSYDMED YIDSLLFVPP DCFIKKKKKR RRRKTKKMMI KKRLKWYKQI VFRAQVSEYG IKTSKIIHVN VSRLPNKPKI AKTISEFRSY VQEAIERYDR YSLQCCSTLR RRFLSTSIML PMPYEEAAHI VIDGRMNEFI NSLAANDAAD QQQLKVVSVL GSGCVGKTTL ANVLYDRIRM QFECSAFIQV SKNPDMKRLF RDLFLQLHQK KKPQPANCND LDINDINISK HLQDKSLWVI IDFCWVSLPQ LAWDKRYLIV IDDLWDPSVW DIIKYAFPKG NCGSRIIITT QIDDVALTCC CDHSEHVFEM KPLDNDHSRK LFFDKLFGSE SDCPEEFKQV SKEIVDICGG LPLATINIAS HLANQETEVS MDFLAYTRDT LRSYLWSNST SERTKQVLNL SYNCLPHYLK TCLLYLHIYP EASIIWKDDL VKQWVAEGFI ATRKGEEQDQ EMIEKAAGLY FDALIERRFI QPSYINYNNK VLSCTVHEVV RDLIGHKSAE ENFIVVVDCN RKNIALSHKV RRLSLVFGDA KYAKIPANIT KSQVRSLRFY GLFECMPCIR EFKVLRLLDL QLFGYCGDPD PIDLTGISEL FQLRYLKIAS DVCIRLPNRM QGLKCLETLD ILNATRVTAI PWDIIHLPHL LHLILPVDTN LLDWIGSMSD PVIREWSLGK LNYLQDLHLT FFSTLPFYNH LETSMEVLGS LIGGHGNLKT IVVAHGPSVK NIVNHSIGYG ASKAIIPLFR MAPPPLLQRF EFSLHNCCIF SQIPPWVEKH GNLCILKIPV RELKMICVDI LGGLHALTTL SLYVETAPIH KIIFNKAAGF SVLKYFKLRC TTGIPWLKFE ADAMPNLLKL KLVFNAIPPM DQPLFFTSGQ LRHKVRHEHG TAVISIEHMP GLKEISAQFE GAVSDLEYAS RTFISNHPSN PTINMQLVGC SSNVDGSRKR KQQPDDTLKD DYAKRLEIPA DKRIATSLEF SSSLDDLPMS VSQFFDCPAF SICQPVESSS RLDDAEITPS GSDVGREHIF DKVVTPSDVG KLNRLVVPKH FAEKYFPLDA AANDKGMLLS FEDRGGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLNAG DTVSFCRGAT LATRDRLFID WKCRAVVHDS LPKLDRPSRA VQKRVRLFGV NLDTQQPQGG ELTHDANAGA AGVEFSAAAS SPSSSQTEAH SSLDLGM // ID T1LQD4_TRIUA Unreviewed; 430 AA. AC T1LQD4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_07102-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_07102-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_07102-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_07102-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_07102-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_07102-T1; TRIUR3_07102-P1; TRIUR3_07102. DR Gramene; TRIUR3_07102-T1; TRIUR3_07102-P1; TRIUR3_07102. DR OMA; EARRCIY; -. DR OrthoDB; EOG09360IIV; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 272 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 272 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 430 AA; 47465 MW; 3DA30AC3ACC92AE0 CRC64; MCEPIAVRPF LTSPFLGGGV KKSIPEEESR EARRCIYHRC TFERRGRGRR RKEEEEGFAT WHGIHGIVGS FFFLFLPLPL ALPSSQAPVS PPSQPAAAER GPGETGEMEG FEFFQIILDN SSSRLRLPDK FTRVLLDGGK PQEVKLREAG HGRRFWDVKV VLDADGHMYL GRGWEQFARA HDLRLGYFLV FSFDGDAVLT VKVFDVSMCR RHYQHDGDTR IKEGGFCIWP GSGSSSDGDS GSSNASDGGS GGNNWSLAEM DVEDGPTGQF SAMLRKCNLG MKQEQYLNVP VDFQLAHGYA ERSKVELRMR GKSWLVHLKH NPKTGGRPRA SFRYGWHQFC VDNALGEGDT CFFRALRQGS AGGGGEDHLL KVEHDSEAAG WCSAASIVCC IAIPSKRDDA DPELKNVGCS GALRALHGFA MGFPSNFLPL // ID T1LVR0_TRIUA Unreviewed; 525 AA. AC T1LVR0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_09120-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_09120-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_09120-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_09120-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_09120-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_09120-T1; TRIUR3_09120-P1; TRIUR3_09120. DR Gramene; TRIUR3_09120-T1; TRIUR3_09120-P1; TRIUR3_09120. DR OMA; TIDHPSS; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 243 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 429 525 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 243 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 429 525 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 525 AA; 59515 MW; 42147FA9E247861D CRC64; IDGDMRNSCE CCKRYWTHLH GKVKRFITRM DRHSRHSMVI PERFVNYFAW KLSGTIKLEA PNGNVYDVGI TERRNKTVLR SGWEAFVDAN HIVESDSLMF RYRGNCRFKV VVFDSSGCEK VFSCAGMLTN ISDQEPSTNS TDISTSFSDG NTHSSARRQS DDCQSGSSGH RRKRAKKDAI SSPSEDSSGE DSPYEHESSE SDGQTLPTPL YVLSGKCYLT EEDDANIVEL VQEIQPEMPL LVAMMRKPIS HSAPFSDQVV PKDYALAHFP RKNQTIKLQL PEQSKKWYCE FRVKSDGGHC SLYDCGFVRD NHLLEGDLCV FQPMPNRKGR TFKVIVHLFR KATIDHPSSE NISKRGLPST KNAPTLCIKE EPNDDEETFS SGHDEHRISK KYLDHDGTEP YMMAMGAELT EVQNKIVLEK VGAIASDLPI YVAVMTKTSV HVSLTFGTEY TARYLRTGGR NLVLQLEGKS QRWHGKMRDK KGALRISGGW TSFASENGLR ERDICLFELM KNKGELKQKM MVYIL // ID T1LVR1_TRIUA Unreviewed; 107 AA. AC T1LVR1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_09121-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_09121-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_09121-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_09121-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_09121-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_09121-T1; TRIUR3_09121-P1; TRIUR3_09121. DR Gramene; TRIUR3_09121-T1; TRIUR3_09121-P1; TRIUR3_09121. DR OMA; MDRNSSH; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 107 AA; 12543 MW; 7B4BDD88D49BA746 CRC64; GGEMRKSCEC CKRYWTHLHG KVKCFFTHMD RNSSHSMVIP ESFVNYFGWK LSGTIELEAP NGNVYDVGIT ERRNKTVLRS GWEAFVDANH IVERDSLMFR YRGNCRF // ID T1M045_TRIUA Unreviewed; 152 AA. AC T1M045; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_10777-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_10777-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_10777-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_10777-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_10777-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_10777-T1; TRIUR3_10777-P1; TRIUR3_10777. DR Gramene; TRIUR3_10777-T1; TRIUR3_10777-P1; TRIUR3_10777. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 74 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 74 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 152 AA; 16657 MW; FC092507A309E66D CRC64; MVASKVTDVG PSGCNLLFTT GFRYSYWNSS QSYVLTKGWS RFVKEKGLHA GDAVVFYRSA SGNNQFFIDC KLRSMTTTTT FVNATAATTL PAPVMRTVRL FGVDLLTAPA LRHAPEHEDY GMAKTNKRFV DASVAAATPA HAVWKKREQG IA // ID T1M046_TRIUA Unreviewed; 170 AA. AC T1M046; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_10778-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_10778-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_10778-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_10778-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_10778-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_10778-T1; TRIUR3_10778-P1; TRIUR3_10778. DR Gramene; TRIUR3_10778-T1; TRIUR3_10778-P1; TRIUR3_10778. DR OrthoDB; EOG09360NDI; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 67 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 67 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 170 AA; 19043 MW; 4DB2FBA379A4DCF4 CRC64; MWRFRDSSWE SMWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDAVGFY RSASGNNQLF IDCKLRSKST TTFLNAAAAP SPAPVTRTVR LFGVDLLTAL APEHEEYGMA PKTNKRSMDA SVAAPTPAHA VWKKRCVDFA LTYRLATTSQ CPRSRDQVEG VQAAGSTFAL // ID T1M047_TRIUA Unreviewed; 148 AA. AC T1M047; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_10779-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_10779-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_10779-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_10779-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_10779-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_10779-T1; TRIUR3_10779-P1; TRIUR3_10779. DR Gramene; TRIUR3_10779-T1; TRIUR3_10779-P1; TRIUR3_10779. DR OMA; APEHEDS; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 67 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 67 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 148 AA; 16309 MW; 63CF507472E904B5 CRC64; MLLNFDDSAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDAVGFY RSASGSNQLF IDCKLRSKTT TMTTTFVNAA AAPSPAPVMR TVRLFGVDLL TAPAPSHAPE HEDSSMVPKT NKRSMDASAA ATPAHAVWKK RCIDFALT // ID T1M0L3_TRIUA Unreviewed; 230 AA. AC T1M0L3; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_10947-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_10947-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_10947-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_10947-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_10947-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_10947-T1; TRIUR3_10947-P1; TRIUR3_10947. DR Gramene; TRIUR3_10947-T1; TRIUR3_10947-P1; TRIUR3_10947. DR OMA; MIINEAM; -. DR OrthoDB; EOG09360P43; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 230 AA; 26325 MW; 19E3E63FBB64F764 CRC64; MAEANSYEEQ RRRQVEENKR KLEELRLHHL PAAVRGAAVK PRLARQIRAT LLAVPLLLLV WLVSQKRKAP KPRGAADDAP PRRSGRIATL PEQPDYRDNL GTGKPRQQKE VKPDHAYAIA KAEELQDELG SDYPTFVKPM PQSLTSLHIP AQFSMEHLPD NGMRMVLVDE EEEEFKVSYR PHSSSLVAGW SEFAIDNELV EGDCLVFQLI KRALFKVYIF RASSYYENEH // ID T1M1D6_TRIUA Unreviewed; 287 AA. AC T1M1D6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_11236-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_11236-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_11236-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_11236-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_11236-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_11236-T1; TRIUR3_11236-P1; TRIUR3_11236. DR Gramene; TRIUR3_11236-T1; TRIUR3_11236-P1; TRIUR3_11236. DR OMA; HGCEGSS; -. DR OrthoDB; EOG093601C8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 194 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 194 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 31018 MW; 81D017720F513CB3 CRC64; MAAGDVATVF LEMSLGTRLA VSFPASSTTV ADLKRRVSHE HAACFPHLGQ IAVQSIKIEH GGSWFHLADS MAVRDAFLFQ GINERWHLQV DASLQVDQGM VTQGHSGGAD SANHSAPAPG RGHGCEGSSS RRCRKTSSSD EMLPDQVEAE AQAQVTPSER EQPLTGKGEG SSDGQNKTES RGHGGEGCGR GPMLNVPMEF GIVHRYTEKK KVLLRMGGDS WAVSLKHGLT STGRPRTSLR YGWQQFRVDN RLRVGETCFF RALPGDGGGD HHVLKVEVRR LDGSYAT // ID T1M2Q1_TRIUA Unreviewed; 749 AA. AC T1M2Q1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_11727-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_11727-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_11727-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_11727-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_11727-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_11727-T1; TRIUR3_11727-P1; TRIUR3_11727. DR Gramene; TRIUR3_11727-T1; TRIUR3_11727-P1; TRIUR3_11727. DR OMA; QKEILKW; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 749 AA; 85685 MW; 9CA60E67F6F1CA20 CRC64; MEEDEEGRPR FFKVLVGDFA RRLEIPRDFL SYIPEVGLRG SNISPVQAML KRSEGKTWVV ELEKVDCCVF LTTGWTKFVV DNSLREYEFL LFRHDRKMDF MVSVFGRNAC EKAVRSSGSA AQATESLERK LPCDMFPTCK RGHSGDELTK ITNNLRQSHS LVMIPDQSDT KIFPFQGSTQ GNGHISPQSF ADIHRHEVDG LKDELKIYLL LKVPMDDDKA KVIAEVMSRL HVDRVTVDLF CAALCLYKWD SDAAAEVLNT CRGKPQIPNQ FLKQKLVLQF DFIKRELRHF FPTGDDCPPQ IRDSTESSLE EPNLSTQALQ NYLPVVKSKL VDDHEPCDLS YKQKRRIVKS RSQQISETPR RSPRLAHLKN SGGSIESGLK EKPEVLESPP SSTIDQVEHR AGHACLLYEK PDHVFKGDRH HAIGSLSQDF KRLKRTRGEV GLSEKPQHNQ ENEENIDQGN NGEILEEQID RNSAETSESF MESDWIDSSP PTKSNSSSMI INELCLTWKP SVHTNSLENV LLHIQRDNFM KTITHVQGII RSFPSDLHCA AIIEAVVQKE ILKWDSCLQD VDAQRVVIAL LEHAKKIKEI HNFNMESRKE EFSTKLQDQL KWQLKELESV CTSLEFDYKK VTCDGNIAVS TSQEQKKKLH ALQDEIKGLQ QSMMMEDEIQ KLVHQVAEHE SLVQKSLMER VRVKTVLKSY KQVLVEVKER LASDELGLID VNALVKVEMD NLRKEIEISK GRLLNIIFK // ID T1M3G3_TRIUA Unreviewed; 360 AA. AC T1M3G3; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_12004-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_12004-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_12004-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_12004-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_12004-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_12004-T1; TRIUR3_12004-P1; TRIUR3_12004. DR Gramene; TRIUR3_12004-T1; TRIUR3_12004-P1; TRIUR3_12004. DR OMA; CEKLPAC; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 226 247 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 253 272 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 24 117 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 283 360 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 283 360 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 42409 MW; 0530AFCD9ED4A2BC CRC64; MGKPCKKHKE LDEHRYWNHT EEQDKRFFKV MIGDFHERMI IPDRFVQHFR GKRGRTIKLV SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HNLRRGDFLV FKYDGHSQLK VLIFGPSGCE KLPACNLMKN AAPAKDWWGN TDDIVNTCHD PPMKFPHCGR QIRPKDDHSL PGCILANGTL LNLNRVQKKQ LKEKIRAMNS EIPIYGCVIR KSSIYGANRS LELKPLFLNG YCIANEWSIW LFIFAFYLQK QCLSYPSVVG LFCIFIEVVF HITKDPFSLY QDISRKYAEV YLPFKEQMLT LQRHGKKWEV RCRVKNNKTK RLMRGWKHFA RGNSLRLGDA CLFELLRNKK KYVMNVHIIR // ID T1M3G4_TRIUA Unreviewed; 403 AA. AC T1M3G4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_12005-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_12005-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_12005-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_12005-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_12005-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_12005-T1; TRIUR3_12005-P1; TRIUR3_12005. DR Gramene; TRIUR3_12005-T1; TRIUR3_12005-P1; TRIUR3_12005. DR OMA; SGCILAK; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 95 188 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 307 402 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 95 188 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 307 402 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 403 AA; 45508 MW; 6BCE454DF29C3A51 CRC64; MPLGPAVVDV SDATPHLLHE HHLLPLVPSP PPAFPLYSQP SPKAPDNTPG RSRHEAPLPP NPKRIVGFHP EMSKPWMKQK ELDEHRYWNH TGEQDKNFFK VMIGDFHERM IIPDKFAQHF RGQIGRTIKL ASRHGYTSDV QITKNLAKLV LDSGWKAFAC AHNLRTGDFL VFKYDGNSEL KVLIFGPSGC EKIPACNLMK NAAPGKEWWG NTAGIVNTCH NLPMKLPHSG RQIRPSKDSS RQGNDIINVS SSSSPSESAG GVSSSEDDHS LSGCILAKGT LLNLNHLQKK QLEEKIRAMN SEIPIYGCVI RKSSIYGKTR TLEISRKYAE VYLPFVEQMV TLQHHGKKWE VRCCVKNKKS KRLMRGWMHF VRGNNLQLGD VCLFELLRNK KYVMNVHIIH KSL // ID T1M3Q8_TRIUA Unreviewed; 350 AA. AC T1M3Q8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_12102-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_12102-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_12102-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_12102-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_12102-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_12102-T1; TRIUR3_12102-P1; TRIUR3_12102. DR Gramene; TRIUR3_12102-T1; TRIUR3_12102-P1; TRIUR3_12102. DR OMA; TRSILMQ; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39959 MW; DE5BFC76CD2DA6DE CRC64; MAESNSYEEQ RRRQIEENRR KLEELRLHHL SAAVREAAAR PKPNPKPRPV RQILSLLLPC LRSVFRFLFA RARIYHWSAR PVSQKRKAPE PGDLRRSGRV AGLPEQPNYL EGALQRDYRG VYEAYAASKT PTAEERAGAV AKAEELKRRI HRIRCPAFVR PMSHECATRS ILMQIPKHFI EYLPAHDEAA VLVDEADDEF HMMYNAHRKG KHCHYYLDKG WRRFAADHDL ADGDCLVFHM TERVKFKVYI FRANPDYESD QTSDDSDDEE RSTLSADVGI GYRDFVLVAC RVAISDPAIV ADLHYNIGLI GVAEILQGKV SWWLGSNRLE LAESGIPTAM GLAEAHRSGC // ID T1M3Q9_TRIUA Unreviewed; 233 AA. AC T1M3Q9; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_12103-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_12103-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_12103-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_12103-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_12103-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_12103-T1; TRIUR3_12103-P1; TRIUR3_12103. DR Gramene; TRIUR3_12103-T1; TRIUR3_12103-P1; TRIUR3_12103. DR OMA; GFAANHD; -. DR OrthoDB; EOG0936176B; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 123 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 233 AA; 27033 MW; 828C6CFFB87718C0 CRC64; MAESNSYEEQ RRRQMEENRR KLEELRLHHL SAAVREAAAR PKPNPKPRPK RKAPEPGEIR RSGRVAGLPE QPSYLEGAGQ RDYRGVYEAY AVWKGPTEEE RAGAIAKAEE LQRRIHRIRC PAFVKPMTHN CASKAAEMKI PKHFSEYLPA HDEGVVLVDK ADDEFHMMYN AHRQGRHYYF HKGWRGFAAN HDLAVGDCLV FHMTERAKFK VYIFRANPDY ESDQTSDDSE DEE // ID T1M4L4_TRIUA Unreviewed; 545 AA. AC T1M4L4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_12424-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_12424-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_12424-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_12424-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_12424-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_12424-T1; TRIUR3_12424-P1; TRIUR3_12424. DR Gramene; TRIUR3_12424-T1; TRIUR3_12424-P1; TRIUR3_12424. DR OMA; KESSYCY; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 218 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 440 544 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 218 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 440 544 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 545 AA; 61648 MW; 8D8F7ACBED7325E9 CRC64; QVMPKWFVNQ FGGKISRSIK LQTPNGNIYD VAVTENMNRT MLKSGWASFV DANQIEENYT LMFRYLGNAL FEVIIFDSNG KEKVLCCAGM KAASDVNEPS SRYVDNSSSS HDGTTQSSAD ECSDSDGSQK ESSYCYRKSA KMPAMCNSSE EFSDYSVTLH HMFSYGWIFF TAEDNSLESD RQKLSKYYVL SGQCYLTEAQ EVKMLGLVKK IRPEIPVLVV QMKKSNVNNS RTLAICKDYA LEHLPCGETV IILQLPRKNK VWKCKLYNRP SRTSDAGRCN LYLGNFVRDN PVREGDICLF QPMTNVKQKR FTMTVHLLSK TSINHSPGAR TGIGSNHGRT STKKAGDVEE PPTDGSLTLC LATARMHVSH FISHYTSLIH VTTCPGEEYS SEHEEHEVSD DSEGGSEPPF MLADKACLTW AQEKKVLEKV EEIESELPLY VAIMRKSNVW RGGSYNTPTL KSAAGYHRGK SSVISLVLQR EEKSRSWPTN LKHNMQHTTH VVKVLKGWTF FARDNRLREG DLCLFKLIKN KEPLTMVIHI IRREE // ID T1M687_TRIUA Unreviewed; 298 AA. AC T1M687; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_13028-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_13028-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_13028-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_13028-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_13028-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_13028-T1; TRIUR3_13028-P1; TRIUR3_13028. DR Gramene; TRIUR3_13028-T1; TRIUR3_13028-P1; TRIUR3_13028. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 33657 MW; E0AAA672EB434115 CRC64; MATAEAGSAS GAGAAYEEER RKRILDNLKH LEDLGISKMA KSLIQATRQQ DKTPRASPKS RKKFEATTEV RRSSRARTTV SYKDDFPELD DFVRRRRISK SVDNGRGYTG RISSYQQQQR AFKRAEKLQD SLDPDNPSFV KTMVRSHVSS CFWLGLPSSF CKDHLPPREH KMVLEDEEGV EFDAVYIGNR TGLSGGWRGF SMHHDLEDGD SLVFELAEPD RFKIYIFKAI EDGKEAEPND KNTDVDSDSA QEVPDQTDSP VSEPPSSPEP LKGAKRRKLP SSPEPLKGAK RRKLRGRR // ID T1M7Q4_TRIUA Unreviewed; 521 AA. AC T1M7Q4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_13571-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_13571-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_13571-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_13571-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_13571-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_13571-T1; TRIUR3_13571-P1; TRIUR3_13571. DR Gramene; TRIUR3_13571-T1; TRIUR3_13571-P1; TRIUR3_13571. DR OMA; RMGDSMM; -. DR OrthoDB; EOG093608PM; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 177 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 331 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 424 516 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 177 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 331 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 424 516 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 521 AA; 59940 MW; E858F063F42B6DF7 CRC64; MEERTPLSVA TSTLAEATWK ENRGRQLVDG RPRPVRETAH GDKGQEKSLV NFLATMACSN GMCTSCECCK RRDEYYYRNL DDEKKYFLVL LIGDFRDEMI IPEELVRRFK RDILGEIKLE TRNGDNHAIV VAKIEEKRIF TVGWRQFVAN YDLQIGDLLM FRYKGNSQFN VIIFDKLGRE KASSVVLDPF IPRVQDRGNE AHEIGSSEKM DVQCGRCNNW LEYHYANLDN ENKYFLMLMM GDFQYEMVIP EGILQRFKGE FPREIKLETQ NRRSNKIGVT ENKLDICYNQ KLVFSVGWGK FVETFGLQTG DTIVLIYNGN SQFSVIIFDK HGCEKALSVI VDPVPPPVQE RRPYGGSLSS EHGQGVRDVP VSSNIVKRKA KLSSSQKEQL RDGYITAHKT KLTLAQKDVV KQKVQSLESK ISIFVAVMYK CNVESPFFLT FPNYYAQKYL GEEARMHLEL LGVKWQVRFP NNRGDKKLKH GWKQFVQGNN LKMGDICLFE LLSNQSTMVV YVIPANDANV D // ID T1MAI8_TRIUA Unreviewed; 503 AA. AC T1MAI8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_14606-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_14606-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_14606-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_14606-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_14606-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_14606-T1; TRIUR3_14606-P1; TRIUR3_14606. DR Gramene; TRIUR3_14606-T1; TRIUR3_14606-P1; TRIUR3_14606. DR OMA; EYLPRES; -. DR OrthoDB; EOG093612PB; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 124 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 329 425 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 124 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 329 425 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 503 AA; 57742 MW; D4504D2889282680 CRC64; IPQKFVENFK GHISEVIKLE APDGNIYNIQ AIRDLNKIVL GPGWGVFVSF YKLKVGYFLV FRYIGDSHFK VLIFDFGTCC EKEVFHVLMN CDPNAQEKES NSESHRRCEL CDVHFYWHHL DDRQKHFLRL MVGDFRREMS IPQKFVNNFR GRISEVMKLE APDGNIYNFK VTKDLNKIVL RYGWAAFASD YELKEHDLLV FRYIGDSHFK VLIFDPSGCE KQSVHIVLNH APNVPKTGIS HDRSFIRETR RRDCGSHDNN SRKTKKMTLV DSPSPRFAEG VTSPEVTMNS GGLREITELH YVLATGCNLT TSQKAEVDAL VKKVRPVIPF YITAMNKTSM SGSLVICKDY AAKYLPHEDQ FITLCHPHKS NIWVDNLKVI TDGSCMLSVG WSCFVLHNEL RESDICLFEV SKNDGEVTMV VHSLEGGHHL QGKKPESQNK CSYPVKVEVT EEEESDNELA ESNYYYSRYA YDLTGKEQEE IFRSALIQQG NPVYVAVLQE NHV // ID T1MAI9_TRIUA Unreviewed; 649 AA. AC T1MAI9; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_14607-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_14607-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_14607-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_14607-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_14607-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_14607-T1; TRIUR3_14607-P1; TRIUR3_14607. DR Gramene; TRIUR3_14607-T1; TRIUR3_14607-P1; TRIUR3_14607. DR OMA; PTRFANN; -. DR OrthoDB; EOG093605WP; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 196 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 359 453 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 644 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 196 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 359 453 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 540 644 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 649 AA; 74066 MW; F2A5FD443A104BF5 CRC64; LQTIPEKFVR SVGGKISELV KLETPDGNTY NVHIAKELNN LVLRSGWSKF ARVYELQEGD LLRFKYNGDS HFKVEIYDPS ACEKETSCVV MNHNPGLQKR SVPRDNPMLS PEGERLAKRH NGCCSDSCKT SKMNPAGTPH KPTKREAPSS EDARSSGELQ TSTRSRYFLA TGCNLTDAHK VEVNKIEQNI RPEIPLYVKT IHSKTWGAHY RINADDTYHL STGWLGFVDD NQLQKGDTCV FEVLKRQRSF TMAVHLLKAS YHHPPGFPAS SKSLRPEAKS FRPADKVRLS RFTTLEGLLK TKVYEKVEAI KPEIPVFVSI MMKTNVSSRS PNEMMGEKGC ESCKKWQEHY YWEHMDVSKT RFFKLMTQDS QQRIRIPDKF ASNFIRQMQS PQGFDLKAPS GETWHVGVSK VGNDLFFSSG WVDFAKAHEL QENDLLVFTF SGNSFEVLIF DASGCEKLSS LFAGAGMRKH FDGKDLLPGS PNCSSSCDVK HEETEEEESD DDTYADFDYC YSRVVKQLPD DEKHEIIGLT SLQRGNPAFM TVLLRAHLQR KDNFLVIPSE FVHEHLHMRS HEVLLLRPNR EERWHVSYYQ GSSSKGFRGQ PWVKFIHDNK LHKGDICVFE LIKGARNENK KAGTTMTVHV VRRKKSDGR // ID T1MAW9_TRIUA Unreviewed; 309 AA. AC T1MAW9; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_14746-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_14746-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_14746-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_14746-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_14746-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_14746-T1; TRIUR3_14746-P1; TRIUR3_14746. DR Gramene; TRIUR3_14746-T1; TRIUR3_14746-P1; TRIUR3_14746. DR OMA; ELSSGWK; -. DR OrthoDB; EOG093608PM; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 43 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 161 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 43 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 161 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 35470 MW; 8809984F1A86E507 CRC64; MEILSLQVGW GKFVGTFGLE MGDTIVFRYI GNSRFNVIIF DELGCEKTIQ TQPFSIGKGM PMESPRLQME MDKSCQDNNT VISVSSRESS GDPVYYEEEC GVREVPGSDF NVRKKKARLS SNQKQQLKDC YFTSRKTKLT STQKEAVKRM VQSIYSEIPI FVAVMRKCNV VAEFYLTFPM HHAKKYLTEE PDMCLQRQGR KWEARYCEYN GGEKLTIGWK QFVEDNKLKM GDICLFKLLS IERTMKVYII SENVANYRAG LQNDTDREAV FRRGAHHADG ACDPDSRFLR ITKTEAMEDD AVFKTEDGA // ID T1MBD8_TRIUA Unreviewed; 511 AA. AC T1MBD8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_14925-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_14925-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_14925-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_14925-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_14925-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_14925-T1; TRIUR3_14925-P1; TRIUR3_14925. DR Gramene; TRIUR3_14925-T1; TRIUR3_14925-P1; TRIUR3_14925. DR OMA; IDRMMIC; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 445 509 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 445 509 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 511 AA; 57804 MW; 094971F12E7D18DC CRC64; QVIPEWFVNQ FGGKIWRTVK LESPNGNVYD VGVTENMNRT ILKSGWASFV DANKIEENYS LMFRYLGNTR FKVTIFDSSG KQKASCCARM GTAASDVRNP STFDVDNSSS SCGGKCDLTV AQEAKIQALV EKIRSEIPVL VVQMKKTSAN FGNLIIRKDY ALKYFPCEAT NIILQLPRKN KEWKCRFNPG RRNLYLGYFV HDNCVQEGDI CLFQPIAKVK EGRFTIIVHL LHKESVRRSP GGTAGMTHTA TDRRTSAKTS LTARVKKTSL TAHVKEEPAT DGMAHTAHKT SHMLKFRGHI SHEKYILFSS IQPDSIENLF EHKTTDRRTG AKTTLTSRVK EEPATDGEDT SSLRPEEDGD NSEGASETPF VLPERASITP AQEQKVREKV EAFESTVPVY VAILNKCNVA RKSGMIITMG KQYASRYLQK QYFTGHRGKK NVISLVLQRE GKSRMWDTEL RRGIDRMMIC KGWVAFARGN HLQVGDLCLF KLMESEEPLK MMVYIIRREK C // ID T1MBD9_TRIUA Unreviewed; 662 AA. AC T1MBD9; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_14926-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_14926-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_14926-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_14926-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_14926-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_14926-T1; TRIUR3_14926-P1; TRIUR3_14926. DR Gramene; TRIUR3_14926-T1; TRIUR3_14926-P1; TRIUR3_14926. DR OMA; HKESIAH; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 136 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 364 467 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 593 662 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 136 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 364 467 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 593 662 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 662 AA; 75289 MW; C66B42A575CE4A15 CRC64; MGINDDWFLL ITESTIFATL SIKFCKIIFG KQKGSMCALW RKENLYWNLE NTNTQRLPGK FTKVLAGRER REVKLREDGR QRRLWDVEVV TDADGHMYLG HGWEHFAHAH DMRLGHFLVL SYDGHAVLTV KVFDGSMCRR HYQHDNDASG GSSSDRGNTL GSEGEGEAPP HTGAEEDDRS QVIQKDYALK HFPREDIVVI LQLPGKNKDW KSTFRIRPSG VPDAGRCNLY LGNFACDNHV REGDICLFQP MTNVKERRFI VKVHILHKAS VDGTTQSPAG EGPDSDGCLK EGSSHNYKSA STPAVSYTSK EFSEENPPAD EAMELDDLQT LSKDYVLSGK CDLTVAQGAK INALIDKIRP EIPVLVIQMK KSSANRATLI IQKDYALKYF PCEDTTIILQ LPRKNKNWKC KFHIRAPSMC NAGRRTLYLG KFVHDTHVRE GDICLFQPMT NVMHRRFIVT VHLLHKESIA HSPGGRTDIG SNHGSTSAKM GGVKEEPPAD DEEYEVSENS EEASENLFMF ADRVCITPAQ ELKLLEKVEE IKFKPPFYVA IMSRSTVCQH GPMLCFGWQY AARYLVQKFA AACHRGEDGP ISLVLQREGK SRSWPTKLQY RRRTLDTTNR MTVLKGWPSF ARDNHLRERD LCLFKLMDNE EQLTMMVYIV RR // ID T1MBV5_TRIUA Unreviewed; 684 AA. AC T1MBV5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_15106-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_15106-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_15106-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_15106-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_15106-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_15106-T1; TRIUR3_15106-P1; TRIUR3_15106. DR Gramene; TRIUR3_15106-T1; TRIUR3_15106-P1; TRIUR3_15106. DR OMA; MAGGNTH; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 198 275 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 444 542 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 584 682 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 198 275 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 444 542 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 584 682 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 684 AA; 76227 MW; C94E3168CB7F5B0E CRC64; MVFGSNNGKG KGKGKGTLDA SSSRAPLPPP SPPAATRFRP GRRRLHIPVH QARWHWEYRQ LLPYPDVTLP HRWHLDPQRI PVPAVPRTQR DDKVTSQDII TALAWHLCLL AFAPLLGCYG NTKRLISGGQ FSPVQVNESP TFSSASVSPR PSQFSRLSSS FQLQRTVTVI AGSGLDCSAK PGLQEDLEDT SEIPYCKVIP ERFAKHFAGK MPRTVKLEGP NGILYDVGVT EHRNRKVIQS GWEVFVDAND IVQKDSLMFR YRGSSRFKVA VFDSSGCEKT VPCFGIGSSM SDQPITNSTG MSGSSSDRNT HSSMGQQSDG CQSESSGHCR KLAWTDAASS PSEDLPGEDS PYEHESSGSD DHTLPKMIST VRIKEEQCSD ASGRSDGCHS GSTRKTAVIS TPSAESGPPK DKYVLSSRSN LADAQKEKID KLLQDVQSRT LAFVAIMRKS NVQPPYPSLT IMKEYAVAHF PHESASVILQ RPGENKRWYP RFYEGNDSIH KIRGEWLDFV CDNSVEEGDI CIFVPAKGGG RFTFTVHLLR AESKAHAGHF VPPYMLSQMS FLSPLQQSIV EDKAEAIQLE AHLYVAIMNK TNVGVKGHYS LEFGAKYAAV YLPKEERTIL LQRKGKEWQT QMHIRNGRRR VLEGGWRKFV SDNRLRVGDI CLFELKRNRR KLTMIVHIIS RDEC // ID T1MEP6_TRIUA Unreviewed; 303 AA. AC T1MEP6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_16157-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_16157-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_16157-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_16157-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_16157-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_16157-T1; TRIUR3_16157-P1; TRIUR3_16157. DR Gramene; TRIUR3_16157-T1; TRIUR3_16157-P1; TRIUR3_16157. DR OMA; HHLAQGH; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 182 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 182 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 303 AA; 33977 MW; 48D7AB2ABE554C0D CRC64; MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY GREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR LVIPKQHAER YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YAYCTSSQSY VLAKGWSRYV KEKQLDAGDI VHFERGRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNA GEQQPWSPMC YSTSGSYPTS PANSYAYRRS VEQDHSDMLH AGESQREADA KSSTASAAPS RRLRLFGVNL DCGPEPEAEA ITPTYGYTHQ SPYAAVATVP SYW // ID T1MGQ8_TRIUA Unreviewed; 695 AA. AC T1MGQ8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_16915-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_16915-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_16915-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_16915-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_16915-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_16915-T1; TRIUR3_16915-P1; TRIUR3_16915. DR Gramene; TRIUR3_16915-T1; TRIUR3_16915-P1; TRIUR3_16915. DR OMA; DKERRIC; -. DR OrthoDB; EOG093604OW; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 90 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 379 474 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 691 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 90 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 379 474 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 596 691 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 79241 MW; CA85DF071F81D339 CRC64; MMVGLGARVV PISPTADKMC YVLQIMYADS NNVAEYEALL HGLRMDRRAS RGSRRPGSQA RPSPRSSEKM GCERCERRDE LDYCNLDDRE KHFLMFIVDD CGQEMIVPDE FLRRFRGEIP REIRLQTRNG HSYTIGVAKY PDKLVLQAGW ETFVKTYDLH MDDCVVFRYK GNSQFDVIVF DRFGREKAFS VIRDSAPPVQ ESHNSGTENL DRSHGHSQPM EVQSPIENAN HPEGRPQPMR MQPPTENANP SHAHPQPMRM QPPTENLDDP VGFSPPTENV NNLFGHSQPT QMQPSTEAVH HFAQMQPSSE VVDHSNGHAQ TMQMQLFCRP TKLRQTMLQW DYSSMGNETA PSPSDTPRDS LSSEHDIEGC ASPRYTLIYN TSLNTVQKEE VDEQTFSKKY VQTHVGDKER RICLQRCGKR WDVQFSSSVE VKRIVSGWRK FVKDNDVETG DICIFELLKI DEMCTMEVHI IHAKDFDRPS QIGGRSVDGW CKEATTKTVE PSHSRPQLVK MQLRNASVED SYSRPQPMEM QSPSKERKIR VETVNSSLGN EGDSSMSEDS VTLTGCIGVH LRRIPLIQKK VVKQKVDLIG SEIPICVLVM QKTNVTGRFA LSISKKYVRR HLGDEVRSIW LERDGERCQV TLGRGPQNNR VVGGWVKFAK ENGLRTGDVC LLERLRHCKE CTMKVHIVRR VKRAG // ID T1MH22_TRIUA Unreviewed; 561 AA. AC T1MH22; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_17030-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_17030-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_17030-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_17030-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_17030-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_17030-T1; TRIUR3_17030-P1; TRIUR3_17030. DR Gramene; TRIUR3_17030-T1; TRIUR3_17030-P1; TRIUR3_17030. DR OrthoDB; EOG09361H9M; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 322 358 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 493 558 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 322 358 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 493 558 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 561 AA; 63559 MW; 7BE580B25B9ADEEF CRC64; MSLSSAKAEY RGIANTAAES CWLRQLLTER CRPPPRATVV YCENVSAMYM SGNPVQDQRA APSTSRSISS PLASASLLMR RTYFLSLRAH HIVCFLGHEA QKANDQPSMN LEDCLPPLSN HFGGPSQHTY ILDKTATLPT PMKKRVEEKT FSNKFASAWL PNKKSQIVLQ VEGKTKTWPT NFKVEGVGRP DKKSWIYSGW KEFVKDINMN VEDVCLFELK EKKERRMPPA SMPNRQGSCV GSIATMHAWE RFQVSGDRPR RVRDVGADVH PRGRRRRPSM RREFGSHLEN IAPETEFVKI IARDGVFDFE VIRDDYEPFL SSDGWEEFVD ATNIQEGDSV LFVDRGNFCF KAHIFNPSGH EKSFFFCQRP TEIFGDVPSS TLSDQRVMNG HEAHKANDQP SMNLEDGSPP LSNHVGGPSQ HTSILAQGAT LSTQMKKRVE EKVQAIGSEI PVYVKEMTEI SIIGSKGKGR GCRTYPVTFC REFASEWLPA RKIKNYLQVE GKAWCTKFDV GRGARMSWIR DGWEEFGWEN GLKVGDVCLF EAKKKYGRML IVHLIRSEME V // ID T1MHM7_TRIUA Unreviewed; 347 AA. AC T1MHM7; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_17243-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_17243-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_17243-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_17243-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_17243-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_17243-T1; TRIUR3_17243-P1; TRIUR3_17243. DR Gramene; TRIUR3_17243-T1; TRIUR3_17243-P1; TRIUR3_17243. DR OMA; NFKGQIT; -. DR OrthoDB; EOG09360CT7; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 242 340 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 242 340 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 40409 MW; 3DAFE893FC7E09D0 CRC64; CGRCREWQEH YYWEHMEDVS KISFFKFMTG DFQQRISIPE KIANNFIGKI TNGGFTLKAP SGEEWRVGVE KIADELFFMP GWVEFARAHE LQENDLLFFK CSGNGSFDVL IFDAGGCEKV SCFFASKKGT NMRKQFDNIV CQHGEEHCIL SDSNDTSMPL SQLVRSTHKA STSKKPRTET ESPKNNNCFL KNEAVEEEEE SDNHHTESDY YYYSRFANCL SEDDREEIFG LASIQLGNPV YVAVLQKTHV RRTNNFLIVP SKFAADHLEG RSHEMLLLRP NRKEKWYLKY YHGSVTRGFN CRRWSKFVRD NRLREGYVCV FELMKGARKA TMTVHVLRKV DDKFVLL // ID T1MHM8_TRIUA Unreviewed; 351 AA. AC T1MHM8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_17244-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_17244-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_17244-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_17244-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_17244-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_17244-T1; TRIUR3_17244-P1; TRIUR3_17244. DR Gramene; TRIUR3_17244-T1; TRIUR3_17244-P1; TRIUR3_17244. DR OMA; TTMVVHV; -. DR OrthoDB; EOG09360G07; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 343 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 343 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 40885 MW; 32B13BF3D2B77111 CRC64; EKGRCGRCRE WQEHYYWEHM EDVSKISFFK LMTGDFQQRI SIPEKIANNF IGKIANGGFT LKAPSGEEWR VGVEKIADKR FFMPGWEEFA MAHELQENEL LLFKCSGNCS FDVLIFDASG CEKVSCFFAN KKGINMRKQF DNIVSQHGQE HCILSDSDDT SMPLSQLVRS THKASTSKKP RKENGSPNSS NYYLKNEVEQ EEESDDDHTE SNNYYYSRIA NCLSEDEREE IFRQISIQSG NPVYVVVLQK AHVRPANNLL IISSKFAADH LEGRSYEMLL LRPNRKEKWC LKYYHSRVTR GFNSRRWNKF VRDNMLREGY VCIFELMKGA RKATMTVHVL RKVDDKFVLL G // ID T1MIA2_TRIUA Unreviewed; 349 AA. AC T1MIA2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_17479-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_17479-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_17479-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_17479-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_17479-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_17479-T1; TRIUR3_17479-P1; TRIUR3_17479. DR Gramene; TRIUR3_17479-T1; TRIUR3_17479-P1; TRIUR3_17479. DR OMA; CTICSLF; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 245 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 245 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 39730 MW; 303EBEFC2EEDC48B CRC64; QKVKIDALIE KIQPKITVLV VQMKKTNAKR HGTLVIQKDY AREHFPCEDT TVILQLPGKK KHWKCTFHIT PSGMPDAGRR NLNLRNFSCD NHVSTGDICL FQPMTNVKHR RFRVTVHLLH KASIAHYPGG RTDIVSNHGS TSATMGGVKE EPPTDGNKML ALLGCMCTSV PIISLIYVKT CPGEVYSSEH EQCKVSEDSQ GASESLFILA DRACLTPAQY LKCLGKVEEI KFKPPFYVSI VSKSMRQFPM LNFVWQYAAR YLLQKFAAGH HDGNNSSISL VLQREGKSRS WTTKLNYRHR TLDTTNRMGI YKGWESFAHD NHLREGDLCL FKLMDNEEQL TMMVYIVRR // ID T1MLG6_TRIUA Unreviewed; 600 AA. AC T1MLG6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_18658-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_18658-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_18658-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_18658-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_18658-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_18658-T1; TRIUR3_18658-P1; TRIUR3_18658. DR Gramene; TRIUR3_18658-T1; TRIUR3_18658-P1; TRIUR3_18658. DR OMA; LCETSRY; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 286 381 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 502 597 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 286 381 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 502 597 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 600 AA; 68998 MW; 607133BAEF2E99F5 CRC64; IPDDFLKRFR GEIPKEIKLE TRNGHIYTVG VAKYPDKLVL RAGWETFVET YGLQIDDSVV FRYNGNSQFN VIVFDRFGRE KASSVIADST PLSPYVQERH IGAPETLVRS HGHSLAPGMQ SPTENVNISQ GHPQLMRVQP HTDNVSRSQG HAQHVQMQLP TDNMRRSEGH PQPIQMQSPS ANVDHFVDDS RHMQMQPPTE TLNRSNCQPQ SLQMHLTCAE RQSNLQRNKS NQGNKSVARD SLCLEDDTNL CETSRYTLGW NTRLNPAQKK KVDQKVEHIP SDNPIFVAMM SKCNVTGTFT LSVPKQYVKR HVGDTERNIC LQCLGKRWEV QFGGRPEEKR IISGWRRFVK DNDVEMGDIC IFELLKKCKT CTMEVHIIHT KDIDTPSKIC QQRHREVVKI MEHSHSLPQL KEMQLRNETV EDAIVHPEPK QIQPPSLERR IRLQRDKSSQ GSKRDSLSSE DTDHEEGALP DCILARFTRL TTDQKKAVKE KVQFIDSETP IFVAMMQQTN VTGRYTLSLS KKYINKYLGD EVRSICLERL GERCQVWFGR RPQDKRIIGG WTKFVKANEV EVGDICLFEL LKHRKLCAMK VHIIRAKDFS // ID T1MLH1_TRIUA Unreviewed; 325 AA. AC T1MLH1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_18663-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_18663-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_18663-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_18663-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_18663-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_18663-T1; TRIUR3_18663-P1; TRIUR3_18663. DR Gramene; TRIUR3_18663-T1; TRIUR3_18663-P1; TRIUR3_18663. DR OMA; MHASHVR; -. DR OrthoDB; EOG09360IUY; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 325 AA; 35860 MW; C528B1AD44C558FB CRC64; MQKMGKNCER CAEWQEHCYW SHMADENKHF FKLMAGDFAQ SMSLPGRFAK NFNGRISEVI NLKPHSGKSW SIEVAGDTDE VVLRSGWKEF VDDHGIGEGD RLLFRYSGAS SFDVLMFDSA GCQKPPSPRP VKRRGCDDND IAENSARAKG RRCGYHASNK AEERAPHPPS PAKGDGAGLE MTLYRGTGKS IARADHGDVD MNHGEAAAKN RYYFCKNGPV SEFHLTEEDK EEISSIPVPV EPRNPVFVNV MHASHVRGTT RTSIVVSDLP SETQTKVADC NANIFSKCGV KSGMLSFVRI ALCCFHPQGV SSDFAGAWKK LAVNL // ID T1MPX3_TRIUA Unreviewed; 189 AA. AC T1MPX3; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_19927-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_19927-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_19927-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_19927-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_19927-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_19927-T1; TRIUR3_19927-P1; TRIUR3_19927. DR Gramene; TRIUR3_19927-T1; TRIUR3_19927-P1; TRIUR3_19927. DR OMA; DEASKPW; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 68 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 68 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 189 AA; 21160 MW; 309768405A381A88 CRC64; LLLSFEDEAS KPWRFRYSYW TSSQSYVLTK GWSRYVKEKQ LDAGDIVHFE RVRGLGTGDR LFICCRRRGE SAPPPPLRVS PPALNAGEQQ PWSPMCYSTS GSYPTSPANS HAYRRSVEQD HSDMLHAGDS PREANAKSST ASGPPSRRLR LFGVNLDCGP EPEAEAATPM YDYTHQNPYA AVVTVPAYW // ID T1MQ65_TRIUA Unreviewed; 194 AA. AC T1MQ65; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_20025-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_20025-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_20025-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_20025-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_20025-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_20025-T1; TRIUR3_20025-P1; TRIUR3_20025. DR Gramene; TRIUR3_20025-T1; TRIUR3_20025-P1; TRIUR3_20025. DR OMA; MEEPPGN; -. DR OrthoDB; EOG09360WXI; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 175 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 83 175 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 194 AA; 21971 MW; BE54CC6349F76BFC CRC64; MERKVDSERR EGIEESNEMG TEVLPAVDNK GKQPLHPMPD EVVLPPTTEE DTKTPEVGDD EGMEEPPGNK RHNYGHYHQE DGPTHFCKVI LAPKLECIPM PLDFTKHFVA VPTEFKLRNN TGCSWKVTVK LMNGRMTLDQ GWATYTVVHH IKIGYMVTFK LLTPDTLKVI IFDDDGIEVV NKCGKHDEAF AARD // ID T1MS69_TRIUA Unreviewed; 1277 AA. AC T1MS69; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_20767-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_20767-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_20767-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_20767-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_20767-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_20767-T1; TRIUR3_20767-P1; TRIUR3_20767. DR Gramene; TRIUR3_20767-T1; TRIUR3_20767-P1; TRIUR3_20767. DR OMA; PSSTMEH; -. DR OrthoDB; EOG093600VJ; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 389 486 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 639 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 389 486 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 540 639 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1277 AA; 140031 MW; 2451C3F4265BCE5C CRC64; MTRLSIRGCE TKYVFTAFGH LPYHPTSLKH VPYVWSSRIR TIFDMGGVRI RARDPSVYYH ELRRSRSLRP FFDGSDEVGP GVRARFRPEL VPFTPTESEV KAPGSAGSLE AGLRRGQTPD SRLRWLASRS AVGFSTGFKR PVRSAQKVML QNIKIWSGMK MSLAWVGFPM NGSTIDPLAI HNGTLNESTN VGVKTGGSRE KRFRKGHEYK PAHCAALLDR PASGVGEACI HMYQTPTYPG GAEGAVPSSL MDTPLTEERR AARRVPRRVC SSGSPTSLNH GESDDAQEMS TNSTEISSSD CYTQLSSESS DEGCENRSSG HRRKRRKTYV ISSASEQSGQ DSPSACESLE SDDVQITPGK DYVLPQRCDL SDAEKNRVVV LIKEIKAKVT VFVAIMLRSY SSYVTIPKEY AAVHFPPESA TITLRSPGKN KKWHPRFYKK GTMIKLTGSW LHFVRDNDVH EGDICIFVPA KGGKPFMFTV HLLRKETTDS QTEVSHESSE CEDSHGQPPY ILPYGARLSP SQRSAVKKKV DSIQSEVPIY VSIMTKSNLG SRHMVELSKR YAAEHLPHRN VTLMFQYMGK IWNINMLFHD RKYPKRWYLI GGWSKFISDN SLRLGDICLF ELKKDEKELT VIVHLLRKES IDHPSGVSPV LDSNYVRAST MIASTVRVGE EPDDEEETAS SGREEQGFDD EPIEHNYSEG ASKAHMPTAP CSESNVSGIS LSPEAREQAA GCSNKSFATE FPNKPSSTME HNRIIHTDRA AASEVIGLSD YRIHNSCDSI DSQGGESLAV QQQSSPSPGI GNSVNLITVY LSLRDSSSCD HRSAEHVEGE SDVALQSSVR VTGQQVGDAE KEVNASGGEN TLADLPHLEP QNVAAVPTQA ALPMPKEKTD TQTNRSAQSD VAQAQPPQGE VEQVGLSGVA TPQPLQPEMQ ASLSREVEAP ANVVIQSAQP LVLEMQPSTP LSNIPLERTH QNRGQSSRQP EAAAGSAQPA QLFPAPSMMF NHPPIGDEPL KNELHRLRLH IDSLDKIYEL KQSQLQTECS QEIEKIKQKY DLLLEERDSV HLEQMKTLDG LLEKVVFHQS LAADFRAKFI SSSAAQAKAY SRPIHQTPQA SQQAPMRPPG VTSTSPPAAW SSAGRPVVPG GAQPSQVDRP STPASSQAPR PPLPFPQVVR PPINPGNLVR TTGAPTSHMP RGPPRGGHGV PSAPAPHLQR RLPPWAHSTS PANQRQQQQH ATSVSSQSSH AVPPVSSSPL PPSRSQATHH GSSTRMDVDV VCLSDDE // ID T1MTD0_TRIUA Unreviewed; 493 AA. AC T1MTD0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_21195-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_21195-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_21195-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_21195-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_21195-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_21195-T1; TRIUR3_21195-P1; TRIUR3_21195. DR Gramene; TRIUR3_21195-T1; TRIUR3_21195-P1; TRIUR3_21195. DR OMA; QGETRLK; -. DR OrthoDB; EOG093608CF; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 232 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 232 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 493 AA; 54973 MW; ACE19F24819A037F CRC64; MDMGELFNPG DLPPTPRPWA FVFFPCLGDA GLRSRCVRPC PGCGGAGGAG CDCGDCEEWR RYCYWNHDHG TKQFLLFASH DKAHLCIPWE VSSQLRDMIP DSEPIKLETP DGRTYSVKFF KFGRITLTSG WRGFVDANHI EENNPMLFVY RGNSTFKVQI FNSSGRDKFL PCSQPPCNHR VLNEQVVPHP EHVDSSAHFG YTMLPGSFVT KAQDDKLLEW ANTIKSGFPL FVAAMDESNV SLIDCHVYIP LRLVDQFKEV VKIVALDKSI YVVGAKKHNE DQIVLQSGWD RFVTDQCIQQ NDFLIFIIQG ETRLKVLVLD PSGSEKTFAM GNSSNAQEKP PLPPTVTNQS SEDNELTDQS SDNELTELSS DNELTDQSSD NELTDLSSDD YEVLGTDTTT SRREQRPLRS CRAKAEKMGS TSCPSTKSDH RHKAGNSNEA IGSETADGVS KPIQLDYSNF SRVNTAYGML GLFSSVNHCL NLILSYESLS ECI // ID T1MTU4_TRIUA Unreviewed; 340 AA. AC T1MTU4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_21370-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_21370-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_21370-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_21370-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_21370-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_21370-T1; TRIUR3_21370-P1; TRIUR3_21370. DR Gramene; TRIUR3_21370-T1; TRIUR3_21370-P1; TRIUR3_21370. DR OMA; KNVHNVR; -. DR OrthoDB; EOG093601C8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 233 332 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 233 332 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 37200 MW; E2F4DC416302FDB4 CRC64; MAAGDVATVF LEMSLGTRLA VSFPAASTTV ADLKRRVSHE HAACFPNYGQ IAVQSVKVDQ GGSWFHLADS MAVRDAFQFH GANETWHLQV DALPHAQHLD QGLATEGHSK DSSAAHSEPS CEMLADQVKV EVGADSEPSC EMLTDQLKVE VGAEEPLVAK GKGSSNGDDP KGSKEAEATS TEQGACERKR LRPRTRVGKT PVTKRANSSG SSESEEMDIN TVGVYAPPSQ FVVMLKECHF VTKNGQYLNV PREFSLAHGY AERKKVLLRM GGESWTVNLK NVHNVRRKAR TSFRYGWHQF CVDNHLRVGE TCFFRALGQG GGDRHVLKVE GRRLDGSYTS // ID T1MVV5_TRIUA Unreviewed; 991 AA. AC T1MVV5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_22120-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_22120-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_22120-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_22120-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_22120-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_22120-T1; TRIUR3_22120-P1; TRIUR3_22120. DR Gramene; TRIUR3_22120-T1; TRIUR3_22120-P1; TRIUR3_22120. DR OMA; LASTWYS; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 161 187 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 264 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 407 500 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 708 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 775 873 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 264 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 407 500 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 612 708 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 775 873 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 991 AA; 112493 MW; B069CF5533272D79 CRC64; MGSQKNPASL GANSRTGQRR SRRRQRATEA ATAWAHTARR KATRAVGAVE PAYATRQRGK TRAEALQRSQ DSPEQGSTAT GSADGAGLAN ACKRGREGHE AAQGLTMSTR VEKYFKFELG SNLKHFYRNQ TNSNLGENLT ERYRRIGFNP DMMALQELGP LVSAGMVCIC IYVCPLALGL AIVGILAASL PKYWWFLAKA DVSCSLDSPA FLVIFIMALD QDHEQGNRSG HRISSKSFQR CEGCDAHYYW CHMDDTQKYF FKCMAIPQKF VQNFKGQISE VIKLEAPDGN IYNVQAIKDL NKIVLGSGWG VFVRFYELKA GHFLVFRYIG DSHFKVLIFD FASCCEKEVF HVLMNCGPNA QEKDTRLDRS LLGERRCQNG GSSNSESHRR CEHCDVHLYW HHMDDRQKHF LRFMVGDFLH EMNIPEKFVN NFRGRISKVM KLEAPDGNVY NIQVTNDLNK ITLTSGWAAF ASAYELKEHD LLVFSYTGNS HFKVLIFDPS GCEKELFRIV MNHTPNVQKR GISHDQIFLK ETRRRDGGSR DNNPRKTKKV TPLDSPSPKS AEGLTSPENT MNSGGPPETS EPRYVLATGC NLTTAQKGQI DALVKKVRPV IPFYITAMNK TSISGSLVIC KDYAAKYLPH EDQFITLCHP RKSNIWLDNL KVTTDGSGML SAGWSSFALH NELRESDVCV FEVSKSAGEM TMVVHSLEGG HHLQGKNKCD YPVKGKAIKE AESDHKHDES KSNYYYSKYA KGLSGEELEE IFRSALIQRG NVVYVTILGK NQVRIKNNLL TFPEKFAAKH LVERSHDILL LRPNRSETWC ARYYYHPEKQ GFNYSSWTKF VRDNKLRKGH VCVFELMKGV SKVTMIVHVF TKVDGRTERE EYFSACSTYS YSTEVFFNLQ KSAMAYADAC VWESSDSFST HKFNERHACF FLRFCKTYRV SQFQKFVSQR NLILLASTWY SMEVSDYHAN LVIHSPSNQE SKTVIAMFLK S // ID T1N1M5_TRIUA Unreviewed; 267 AA. AC T1N1M5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_24252-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_24252-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_24252-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_24252-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_24252-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_24252-T1; TRIUR3_24252-P1; TRIUR3_24252. DR Gramene; TRIUR3_24252-T1; TRIUR3_24252-P1; TRIUR3_24252. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 149 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 149 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 29949 MW; 1CAFED721AA08D07 CRC64; IPWEVRRQLR NVITDGEPIK LEAPDGQMYS VKFVKFGLIT LTTGWRRFVN ANRIRQGDPI LFVYCGSSTF KVHICSSSSH KNSLPCSQQP PNILRAVPPH DRHVLNEQMV PGPAHVGYTI SLGTWLTKEQ KKKVLELADS SMRSEIPLHV AAMIKRNANE DCYVYIPLRL LDNFKEGVTE AAIQLEAHGN DMVYSVGTSK HSDDQVILQS GLSHFVASLR IQDNDLLVFR NKWKDRLEVL VLDPSGCEKT CFAMGNSSNA QEMASTS // ID T1N1T4_TRIUA Unreviewed; 360 AA. AC T1N1T4; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_24313-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_24313-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_24313-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_24313-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_24313-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_24313-T1; TRIUR3_24313-P1; TRIUR3_24313. DR Gramene; TRIUR3_24313-T1; TRIUR3_24313-P1; TRIUR3_24313. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 256 348 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 256 348 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40309 MW; 914087AC339CD071 CRC64; MPDAERQSPL ASAERRPHFF KVLIGDFKKR LKIPPKFCKH IPWEASRKAK GLKEASMAAT LEGPSGRTWQ VVIRRTAEGT FFTAGWAKFV QDQALRELEF LVFRHDGGTS FAAMVFDKSA CEREDLLLAG DAPRPRRKRG RPRTASRALD ESTGMELVPY RAPADRPPQA ACSDRMPESD KSNGTCSLCF SSFYIAFRFG FSDAMAMCSV QHNACSCRIS RASRPYEGRG GRRRAPAVLD RRPTVGVGGX SSPPDCVIRM STMHVYYSFM MRFPTGFSRQ HLPREKTEMV LRDPGGKAWA ALYIPSTRDR LSRGWCAFAR GNCLEEGDCC VFELVGAAEF RVHVFRVVEP AVPAVRLRLA // ID T1N358_TRIUA Unreviewed; 103 AA. AC T1N358; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_24820-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_24820-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_24820-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_24820-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_24820-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_24820-T1; TRIUR3_24820-P1; TRIUR3_24820. DR Gramene; TRIUR3_24820-T1; TRIUR3_24820-P1; TRIUR3_24820. DR OMA; NDEYWPL; -. DR OrthoDB; EOG09360LPX; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 82 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 82 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 103 AA; 11326 MW; 55C119C0DBD4E1B0 CRC64; VQVVPRSMVP FLPSKPTPAT LTWQGRSWEM RFTGGRHIQR LEAGWRGFAL DNALRLGDGC VFELVGCDGE GIVFRVQVLR AEIPASIRER AGGYTPSSAI VLD // ID T1N388_TRIUA Unreviewed; 247 AA. AC T1N388; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_24850-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_24850-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_24850-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_24850-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_24850-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_24850-T1; TRIUR3_24850-P1; TRIUR3_24850. DR Gramene; TRIUR3_24850-T1; TRIUR3_24850-P1; TRIUR3_24850. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 247 AA; 26720 MW; 019D56EF94561ECE CRC64; MGPLFEKAVT PSDVGKLNRL VVPKQHAEKH FPLKRTPETT TTTGKGVLLN FEDSEGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKGLGAG DSIVFSCSAY GQEKQFFIDC KKNKTMASCP ADGGAAEAVW RRHRRREEGA SGAGGAGVVQ EAMRGTQPAL SCPRLAEGHF PEVNLEIIAA REARGGSESC DVVLHVLEDG VDAGGGAGGD EAVDANHEEE EGEEEVPVAS PLILLRRSLL LCSSVRA // ID T1N389_TRIUA Unreviewed; 568 AA. AC T1N389; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_24851-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_24851-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_24851-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_24851-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_24851-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_24851-T1; TRIUR3_24851-P1; TRIUR3_24851. DR Gramene; TRIUR3_24851-T1; TRIUR3_24851-P1; TRIUR3_24851. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 282 337 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 395 504 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 282 337 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 395 504 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 568 AA; 63912 MW; 02218E2160ADD985 CRC64; MAHANRWPHT QITDSSDFDD EHHEGNMQDL RRLCSPQTTT ECLSSLPPGL AQPHLRLQNN QATHGRAPRT RREDPTTKAR AATEAPLDAV IVAIQKSVPP KQPPQQTTRR RYRQPPRRRC RQPLVSSCSR LQDDAPKEEE DVKAPSSPDP ADQRQIICVE KEQLSNKIIS KALRPIYQTD DVCKPTCGWR VRRIIVSTTH QNSSPILDIG ARIFLDLFQT FQRCSFNGSR HFRQLRDAYD DFVNLKMLCQ HSLSKVLIRL GFVIADESVT SRSTSAQLAS SRFKGVVPQP NGRWGAQIYE RHARVWLGTF PDQDLAARAY DVAALRYRGR DAATNFPCAA AEAELAFLAA HSKAEIVDML RKHTYADELR QGLRRGRGMG VRAQPTPSWA REPLFEKAVT PSDVGKLNRL VVPKQHAEKH FPLKRTPETT TTTGNGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKDLAAG DSIMFSCSAY GQEKQFFIDC KKNTTVDGGK SASPLPVVET AKGEQIRVVR LFGVDIAGVK RGRAATAEQG PPELFQRQCV THGRHSPA // ID T1N3I1_TRIUA Unreviewed; 189 AA. AC T1N3I1; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 12-APR-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_24950-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_24950-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_24950-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_24950-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_24950-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_24950-T1; TRIUR3_24950-P1; TRIUR3_24950. DR Gramene; TRIUR3_24950-T1; TRIUR3_24950-P1; TRIUR3_24950. DR OMA; MRSEAIL; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 134 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 189 AA; 21939 MW; 3C37A0DD8998771B CRC64; MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE RCFPLGGDSG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRRIP VGRRHQELQP SLGTDTPAQA VRREPRLRAR ARGRSRARDA GDVRLRAPEP LRRRVSSSQQ LGQFMKKMTR RSDAMPFFA // ID T1N587_TRIUA Unreviewed; 527 AA. AC T1N587; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_25576-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_25576-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_25576-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_25576-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_25576-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_25576-T1; TRIUR3_25576-P1; TRIUR3_25576. DR Gramene; TRIUR3_25576-T1; TRIUR3_25576-P1; TRIUR3_25576. DR OMA; FSENNDC; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 118 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 180 273 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 433 526 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 118 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 180 273 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 433 526 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 527 AA; 61272 MW; E3101743092CE371 CRC64; MGTSFGSCKL QDEQYQYYKN LDDEKKYFLV LMLGDFQDAM IIPEEVVRRF KGEIPGEIKL ETRNGYSHTI VVAKYQEKLV LTVGWRQFVE NYDLQMDDSL IFRYKGNSQL SVMIFDKLGR EKALSVVPAP FLPQVQDRRN EAHEIGYSQK MDVPRERRKK RTEYHYANLD DEKKYFLVLM MDDFQDDMVN SYSNTIVPKE FVQRFKGEFP GEMILETQNR RSCKIGVAKN NGKLVFTVGW GKFVETFGLK MDDTILFRYN GNSQFNDIIF DDDGCEKASS VFSDPSPPPV QERHRSATDT VKSSHVHTQA IQTESFSIVE GMPMGSPCFK MEMDKSCQDN NTVISISSCE SSGLRESSSE EEYVVHKVPR SDYVRKRKAG QLKDANGVTT LSSFKQGQLK DHYITAHKTK LTSTQKEVVK QKVQSIYTEI PIFVAAICKY NVVVEFLLTF PRYYAKKYLG EEPHMYLQRM GRKWDVWFSE NNDCKNLRRG WRQFVEDHKL KIGDICLFKL LSIQSRTMEV YIIRAND // ID T1N5E8_TRIUA Unreviewed; 354 AA. AC T1N5E8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_25641-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_25641-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_25641-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_25641-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_25641-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_25641-T1; TRIUR3_25641-P1; TRIUR3_25641. DR Gramene; TRIUR3_25641-T1; TRIUR3_25641-P1; TRIUR3_25641. DR OMA; VFLQNGC; -. DR OrthoDB; EOG09360BFM; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 292 354 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 292 354 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 39368 MW; 4A7EB7AA86B285BC CRC64; MRRRFGSPHW NCSYLGNSNR QPSHPTPPVS SSNHHVTVCT STELNRSDQP KQRIHCDSTV TTSPAEHGAL RPPPTTVQVR RAGAVAKLPP EAGVTSKTRP RFIKLLRPDD REKMTIPDEF VQQHLIGLRV AQPKSLDHWP YRQVMASRAR SASIGRAVFL PNGCMKEYPY LADEADGANT AIPQTGVPAI SIRIEMIHFI RKTGPQNITM PGAKQLVAAT VSKKRNYNRQ VVSAILAPVP AIKAKTVESQ SKPTGILRRH SFTKQITSSS LKRFFAVKGT FCSSIGLLEA CTIQLKTSME GSARSWPVAF NIANTYGYIT GKGWKRFCRD NDVEEGDRCT FKVVEKMVWH VVIN // ID T1N5N7_TRIUA Unreviewed; 337 AA. AC T1N5N7; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_25737-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_25737-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_25737-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_25737-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_25737-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_25737-T1; TRIUR3_25737-P1; TRIUR3_25737. DR Gramene; TRIUR3_25737-T1; TRIUR3_25737-P1; TRIUR3_25737. DR OMA; QRWHTEL; -. DR OrthoDB; EOG09360I1Z; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 112 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 112 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 337 AA; 38782 MW; BA52DED06ADAB752 CRC64; MSNSCECCKR YWTHLHGKVK CFFTHMDRHS RHSMVIPERF VNYFAWKLSG TIELEAPNGN VYDVGITERR NKTLLRSGWE AFVDANHIVE NDSLMFRYRG SCRFKVVVFD SSGCEKVVSC ARILTNISDQ EPSTNSADIS TSFSDGNTPS SARARSDDCQ SGSSGHRRKR AKKDVISYPS EGSSDEHKSS ESEDIEHIRL TPEHDDTDPC MMPMGTRLTQ VQEKKVLKKV GAIASDLHIY VAVMTRRIVL VSLTFATQYS ETYLRKGSRS LVLQAEGKSQ RWHTELHDTK RTLRICRGWT SFARDNNLRE RDICLFELMK NEGEQKKMMV YIIRRER // ID T1N7X9_TRIUA Unreviewed; 482 AA. AC T1N7X9; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_26567-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_26567-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_26567-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_26567-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_26567-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_26567-T1; TRIUR3_26567-P1; TRIUR3_26567. DR Gramene; TRIUR3_26567-T1; TRIUR3_26567-P1; TRIUR3_26567. DR OMA; MASCFQP; -. DR OrthoDB; EOG093607P2; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 157 252 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 420 482 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 157 252 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 420 482 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 482 AA; 53920 MW; 083C97A4F5725F9F CRC64; QRIPRELSTH LRSRISDTIK LDTPNGRTYD VVVTWEFGEL VLRSGWDAFV TAHHIEENDT FLFIYHGNSN FEIHIFNSRG CEKMASCFQP PSEIFGAFPP SEPCDHHVLN AAPNPRHVQT QVEFDYTMST GCYLTKSQDE KVVEIARKIR SEIPLYVAIM KKLNVNVKDC SINIPLRLVS HLKEEAGSAI IKLEAPGGNI YNVRASKHSE DQVVLQSDWD AFVAANHIQL NDLLIFHSKG KTRLKVLALD PSGCEKNSSC FTQKKSKTGE GSVQITDARP CTVEIIDLTS SDDDHTERED AGRSSGRRKQ VPGSHAKARK MASASSPSTK SGSDTHKLKH PISNNDNLQG PSRPPYILAR GVTLTGRVEK KVQEKVQAIG SELPIYVAVM TKSCVGGNLF SLEFCAEYAS TLPSRDQTLI LELEDKDWHT TLHIKGSRKI IYRGWSKFAC DNNLQLGDIC LFKMAERRTR GLAMRVHFIC KS // ID T1N8U0_TRIUA Unreviewed; 627 AA. AC T1N8U0; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_26890-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_26890-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_26890-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_26890-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_26890-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_26890-T1; TRIUR3_26890-P1; TRIUR3_26890. DR Gramene; TRIUR3_26890-T1; TRIUR3_26890-P1; TRIUR3_26890. DR OMA; FEPTAMG; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 277 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 277 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 572 613 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 627 AA; 69755 MW; B3B31CF0C4C49440 CRC64; MKTYDYINRV DITLPRTVYE GIYQCAYNPF FLLLWLTLTL TPPIGAPESK RGTPAGVPHS AKSKTGQKMV HRRRPLLDEG SSSRNEDGGG DDFEPTAMGG TPAGDSPHSA RTKMGQKMSL AHRRLSLLDD GSRISRHIAA AAAAADDDGG GSEQMGEEFT VDVAQKNTAV DDSDDPDGSG DDFVPLIMMR TKNVKSEPGK HPGFRYKHKA QRTINKTYKR KKTGRSAGPV YAKRKIEKKP RLVGSNNISK ISDDDGQKKY ARALEVEKKL PAEGPSFVKL MQISHVVRVF WLGVPVSFCR EHLPNHDVTI VLEDEDGLRF DTNYLARKQG LSGGWSRFAT RHHLKVGDAV VFQLVEQTRF KVYILRESKF TTTDGALSLL SLDTSMENNM PEKGGEDTSD EDVKSKEDPE VTKVITNKAS DDDSNDPFSE AAANGGIRSP DPDPDFDAVK TFRAFKMVID SSVIDRKLVP DRLLWTYYKL CGDRKAFLHR RLPKHINLTL AAGVIVETAS IAEGIRSYPS SCSSCEDLAA WKKTLESFEL LGMDVGFIRK RLDELLFLLD ARSSDDHLPE GYEEVKLERA RAAEKVKALE SKMASLKDAL KDMDMEMEEI AEKRRGHAML QLAAAPW // ID T1NBI8_TRIUA Unreviewed; 305 AA. AC T1NBI8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_27886-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_27886-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_27886-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_27886-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_27886-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_27886-T1; TRIUR3_27886-P1; TRIUR3_27886. DR Gramene; TRIUR3_27886-T1; TRIUR3_27886-P1; TRIUR3_27886. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 40 95 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 269 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 40 95 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 269 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 33196 MW; 35EFFFD50EC8AA31 CRC64; MASGKPTNPE IDNDMECSSP ESGAEDAVES SSPAPAPSSR FKGVVPQPNG RWGAQIYEKH SRVWLGTFAD EESAARAYDV AALRFRGRDA VTNYQLPLAV EGASSSSTSE LAFLADHSKA EIVDMLRKHT YADELRQGLR RGHGRAQPTP AWAREFLFEK AVTPSDVGKL NRLVVPKQHA EKHFPPTTAA ATGSNGKGLL LNFEDGEGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLV AGDTVTFSRS AYVMNDTEEQ LFIDYKQKNK NDEAADAAKN EAGHAAVKLF GVDIGGGEMA GSSGG // ID T1NCY3_TRIUA Unreviewed; 610 AA. AC T1NCY3; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_28399-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_28399-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_28399-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_28399-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_28399-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_28399-T1; TRIUR3_28399-P1; TRIUR3_28399. DR Gramene; TRIUR3_28399-T1; TRIUR3_28399-P1; TRIUR3_28399. DR OMA; KIDMEQK; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 278 361 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT COILED 567 601 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 610 AA; 67426 MW; 050E033D76AF712C CRC64; MARENGKCTF QMCTGHFSNR AWVKTNQPTY TASFNHYSRT KKRGRPAGGG SPSVSKSERD KMVMEQKMAL VHRRLALLDS EGDKEADVVP TATMVDVVFH ISHFISFCFL KLDPGSLTIA ELPLIIYNGP WGENDDRLAI VVDQQPVVVN GDDTDDEDEY VPLRIVRPRS VDSEQKRLLD VSQTHNAQDT GTAKKKRGRP VNAKIDMEQK LNMSTPGLGL VESGGSNSSK SDVDDDLVPM VAAVNCQKTC ASVQGNFGSA MERAEEVLVK LPAEHPSFVK YMLHSHVVHG FWLGLPSDFC NKHLPKKDTA IVLEDEDGHN YDAKYLGAKQ GLSAGWRGFA INHGIKVYIL RANNFTTTDG ALGLLCLEGG KEKIPKEESS NDVKSEAGKE NIPKEESSND VKSKAGKEKI LKEESSNDVK SEAVKEKIPK EESSIDVKSE EKPKVAQSDS SNLASESITD GIKFSDTVID FDNVKDFSSF SIVVDGLVID CEFPDHLRET YYELCCAQKS FLHKELLKGL NLTLVVGAIM ETIDIAEGIR ACKARAPSCR DFVVWKKNLQ ALKLLGMNAV ESRISSVKDT LEEIDMEMEE LESSVKIVDE MMQLLATAPW // ID T1NE80_TRIUA Unreviewed; 623 AA. AC T1NE80; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_28877-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_28877-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_28877-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_28877-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_28877-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_28877-T1; TRIUR3_28877-P1; TRIUR3_28877. DR Gramene; TRIUR3_28877-T1; TRIUR3_28877-P1; TRIUR3_28877. DR OMA; CIFVPEK; -. DR OrthoDB; EOG093601YU; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 503 603 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 503 603 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 623 AA; 70084 MW; D610F2CA0790DB34 CRC64; MADEAAAASS MQAAAAAALA SLHLPPPGLT ETDNQDRKIF GRGARIKRKA KRKWGFVGGE AGAVDSGGLR PRLSHRRSTC RGGVGSMDEV LHGEVGIRSR FSAGRIREIM RGLTPRQQGY VAKYGFEHFN RIGAFSVHEP LTEWIMGKIN PPFSEFRINA DKTIVFSKPL VQKILGVPTG GRPFVLHGQK SDKIKELRDL YLNNGLRATI PHCVSLLKNN EDEESFMRTC LLIALAAVLT PTTGNTIDLD YLWAFEDMSK VHDLDWAGHI TEHLMDEVQK FQYKSREEKM RDFWVGGCLP LLTLWQWCAS VKLIIAYMDH LDLPRGRIVD HEINYSVPRI CHVSKDDFQF AAIADLHRQH FKFATFGILP FRDRTPYTDN PVTDTEVAAD DLRILSNDQV LSGQWELVEV HEQKIDELVK ETQPEALGFA EASIDHFRLG RTDIGSNQVE DSAREYESSE SDDHLTPPEA DYGVIFRSYL SGTQMERVNM LIHKIKPETI VFVATMRKCD VQLPTPLLII SKERSLAAAA HFPHENGAVT LQMPGKSEKW RPRFFIEKDN CMLAGNWLDF VCDNQVQVGD ICIFVPEKGG ERSTFTVHII RAEATHRRGV KRVRSSLDSP GGV // ID T1NG86_TRIUA Unreviewed; 508 AA. AC T1NG86; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_29627-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_29627-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_29627-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_29627-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_29627-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_29627-T1; TRIUR3_29627-P1; TRIUR3_29627. DR Gramene; TRIUR3_29627-T1; TRIUR3_29627-P1; TRIUR3_29627. DR OMA; QHTTHAM; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 438 506 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 438 506 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 508 AA; 57648 MW; D0E94556CC417C0C CRC64; MSNPCECCER KIRFIRKING NFMHSMVIPE WFVSQLGGKI WRTIKLQAPD GIIYDVGLSE NMNRIILKFG WAAFLDANEI EENYSLMFRY LGNSLFEVTI FDSNGKEKVS RSHYTDNSSS SHPGATQSSA GQGSDSDGSQ KESLYQYKKS AKMPAIYSSS EEFSEDNFVE SEDQQMLSKY CVFSGRCYLT EAQKAKVLAL VKKIRPEILV LVVEMKKSNV KQSGTLVICK DYARKHMPCE GTNIILQLPR KDKGWKCRFH IRPSGTSDAG RRNLSLGNFV RDNHVREGEI CLFEPMTNAK EKRFTMTVHL VHKAGIYHSP GERTDIGSNH GRTSTKMASA MDEPPTDGEE YSSEHEEHGV SDHSEGGSEP PFMLADKAYL TRAQEKKVLE KVEEIESEVP LYAAIMSKSN VYRGGGCRYL VQKSAAGHHR GKSSLISLML HREGRSGSWP TKMQHSMQHT THAMRVLKGW TFFARDNRLR EGDLCLFKLI KNKEPLTMVI HIIRREEC // ID T1NGI3_TRIUA Unreviewed; 1110 AA. AC T1NGI3; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_29732-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_29732-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_29732-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_29732-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_29732-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_29732-T1; TRIUR3_29732-P1; TRIUR3_29732. DR Gramene; TRIUR3_29732-T1; TRIUR3_29732-P1; TRIUR3_29732. DR OMA; MACRESY; -. DR OrthoDB; EOG0936036Q; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0004672; F:protein kinase activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR CDD; cd09612; Jacalin; 2. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 2.60.40.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR013783; Ig-like_fold. DR InterPro; IPR001229; Jacalin-like_lectin_dom. DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant. DR InterPro; IPR011009; Kinase-like_dom. DR InterPro; IPR000535; MSP_dom. DR InterPro; IPR008962; PapD-like. DR InterPro; IPR000719; Prot_kinase_dom. DR InterPro; IPR008271; Ser/Thr_kinase_AS. DR Pfam; PF02362; B3; 1. DR Pfam; PF01419; Jacalin; 2. DR Pfam; PF00635; Motile_Sperm; 1. DR Pfam; PF00069; Pkinase; 1. DR SMART; SM01019; B3; 1. DR SMART; SM00915; Jacalin; 2. DR SMART; SM00220; S_TKc; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF49354; SSF49354; 1. DR SUPFAM; SSF51101; SSF51101; 2. DR SUPFAM; SSF56112; SSF56112; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51752; JACALIN_LECTIN; 2. DR PROSITE; PS50202; MSP; 1. DR PROSITE; PS50011; PROTEIN_KINASE_DOM; 1. DR PROSITE; PS00108; PROTEIN_KINASE_ST; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Lectin {ECO:0000256|SAAS:SAAS00710107}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 289 Jacalin-type lectin. FT {ECO:0000259|PROSITE:PS51752}. FT DOMAIN 303 450 Jacalin-type lectin. FT {ECO:0000259|PROSITE:PS51752}. FT DOMAIN 400 738 Protein kinase. FT {ECO:0000259|PROSITE:PS50011}. FT DOMAIN 760 889 MSP. {ECO:0000259|PROSITE:PS50202}. FT DNA_BIND 2 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1110 AA; 122237 MW; 3F1585641C559783 CRC64; MFVKVVTPSD TGKLNRLVIP KQHAEKYFPL DASSNDNGLL LDFEDSAGKP WRFRYSYWNS SQSYVMTKGW SRFVRETLLE AGDTVFFSRG VGEAARGRLF IDWRRRRGPD VVLSSPHHRG FTLLSVGSDG FAYPHPNLEG IYYEDRAMGG NRGIFNDIKA SPLRLNSVTI RSGEVIYSLA FSYSDNYEKQ HHAGPWGGCK DFSYGSFDTI QLGPSEFLTE VSGTIAFSAQ YSSNVITSVM FTTTGRQYGP FGGGVGIPFH SPVMSNGSIV GFFAHAEWVV ESIGLYVNSE SKLWEPMKGQ DSVTKIGPWG SDTGRPNDVD VLPGRLISVV VHNSTVINSL TFAYIDWDGQ QQTAGPWGWT PEPFDGKIDT IILGRSEFLT AVSGTLGRNS GYSDVVTSLY FVTNTGGYGP YGKGGGTRFR SSLQGNGSIV GFFVNVRGDE IDAIGVYFSP EMEACKEKEE GGVGISRSMA CRESYHDKNY GKEGVLLITT YASVYELRTE ANLSNYPISL NNMRLESNLI SLGLNMEVHA VIRVEMESAS NVLEHIVLDR SAEPTNLPLA LLKHITEDFN DKRQIGCGGF GIVYKGIVHR DMKPENILLD DLMIPKITDF GISELLDGAT HAVTSDPTGS RGYCAPEFIA RGEVSIRSDI YSLGVIIKEL VTGCKDEPDI QNFHTAQNKA QTPTRMCLVV SESTPSSHVP NNMLIEGTFT FQTCIEEGIT LELMTSRYMD FTENTPFLVL RRWRYRWNKS ANYPPFGYQQ ISAYPWELLE FDLLELNFPF EVNKQIPCPL QLTNVTDDYV AFDIEMMGIL RYCIKPEKRV VPPRSMCNVM VTLQPHERVP HAMVCKDELF ILQCAAVSEG LTAEDIIEDM LNKKSEVGAG ARDMTFTATT NPIDIPYRSR VSAVLTGSST TAVIHSLSSP ATVTMVGTGS SSSGQAEGGA RGAEEGSTSH QRGEKGCSRG AVATPSPAAG GFHLMSCLKD VPTLRDDNHT EWRKKVELAF VCADLDWVLD EPQPVRPTEP NTIESTIVGS IAASTSVGEL LIKIKSQFTG SSKIYATQVL KQLVIEHYTG GGIREHILRM SNMAAKLKPM DEDLEIKPKL PGHGFTAKGV // ID T1NJZ5_TRIUA Unreviewed; 645 AA. AC T1NJZ5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_30996-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_30996-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_30996-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_30996-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_30996-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_30996-T1; TRIUR3_30996-P1; TRIUR3_30996. DR Gramene; TRIUR3_30996-T1; TRIUR3_30996-P1; TRIUR3_30996. DR OMA; VLYQCTP; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 93 186 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 582 645 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 93 186 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 582 645 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 645 AA; 70763 MW; 8C0C7F4605FC40A6 CRC64; AEMMEVIKKE QEEDGTAQSL SLEEGGAKKV VGGGHEEEPS PSGKAKKKTR KQGVSDPQRK RACVDCTRRC ARVHGRATAS SSGQAPPAPV ATPPSFFKVM TGSFSEKLDV PPPFAKNISG LADTNVYLED AFGLRWRVYV SSRDGRLSFG HGWSNFVLDH AVAVGEFLVF RHITRSVFVV QIFAKSACER LHLCEKNKRQ SKKRKKPQEK ASSDGDRTAK ASKKSSKDKD RKSSKKKQRA CDLLDGDQDR AHGDQGQDQD HMVLISTANT QAENCGGSDF GTYAEPTTPL AMMDLDDEIT DDIFLTADAY EFETDLCIPE EPGVFPVDNG IGMEAPVTRG QTSGFSCAEM IGSRNCDSSV VWHGEKSACL KNVQMADARS TDTNAPVLDM DMATLPSYAL SQITEHKPFP RIDAADPPSE CATGNCKKDT DYKFMDMFLI DHAYSAIVLV EDSSAEQDED LRMQDGAGRA AAEIISGGSK PGERGERRRK RRVQPADGFL TSGKEDAGDH ESASPNPSSR KLCVAAPPAD QTWLVSRSYS DLVLRSKDII TSVVRSELVF MQEFPCRMPV LPGRKKQGRK VVVLEDPGGR RWPVLRWPVL YLCTPTFSGF VAGWADVRAE NGLREGDACE LELRRGSYSE LALRV // ID T1NND6_TRIUA Unreviewed; 555 AA. AC T1NND6; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_32260-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_32260-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_32260-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_32260-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_32260-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_32260-T1; TRIUR3_32260-P1; TRIUR3_32260. DR Gramene; TRIUR3_32260-T1; TRIUR3_32260-P1; TRIUR3_32260. DR OMA; FTGRKFR; -. DR OrthoDB; EOG0936089E; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 235 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 454 552 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 235 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 454 552 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 555 AA; 62537 MW; 33F85CE63AD0F418 CRC64; SQMEKLCDCC KRYADHLDEK MKCFRRHMGA DFRHGMIIPK KFIDNFGGKI SRTIELESSN GNMYVFEVSK LMGNTVIHRG WQAFIDELHI IENDSLLFRH IEKSRFEVLV LDSDDCEKVF FCPGINLNSV NISNGSRDNA TRSSGSKRFA TCGRGNSSHP RKAAKTALNY SSPENSEEGT EDIPSEHESY FELDDGHTPS RQDYVLARGR TLSRVQDEKV TTLIQDVGAE IPVFVAVMKP SYVKSQTSAL VIPKGYAVEH LPSKSQTVTL QRPGKSKKWH PRFYIRKDTH GSILCGPGWL EFVCDTRVQV GDICIFERMK GTGRTFSLRV HLLRKSMLHS GGSGTGPKRV SSTHGKTRVN SATPKRACIT DGRTRAKATS TTCVRKEPGD GGNAPYSVRS HGHEARQGPV ESDKSRGPWK RPYVISSTAC LTREQEMNVD KRGRALQSKV PIYVSIMNKS SVGNSLYTVN ICREYAAEYL AAGEQTVTLV TAEMSKAWEV KVHPRNGRAK VLRRGWHKFA RDKHLKVQDI CLFQLLTDQR KLTMMVDIIR HHENQ // ID T1NP92_TRIUA Unreviewed; 341 AA. AC T1NP92; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_32580-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_32580-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_32580-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_32580-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_32580-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_32580-T1; TRIUR3_32580-P1; TRIUR3_32580. DR Gramene; TRIUR3_32580-T1; TRIUR3_32580-P1; TRIUR3_32580. DR OrthoDB; EOG09360UFC; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 226 321 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 226 321 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38298 MW; 5C6AA947706DFF6E CRC64; MAANGFGCHE WEAYLLHEAN YSAPPDMRVL GLRRLTAGCV LVPLQPNNDR FHGEIARIRA SLPEEVRGHP EYTANNHTQW AAYFQCRHEE QLASTNNGPV RGVHNTDSHR PWWGVPGCTL HFVLEHLEGG NEPPFEYPAT PAPDGDQCKR IVQSRCMESS DVQGTSPLPD RVKDEQMETP LCPSKQLPDA HPIKPKVEPC ENSLSPAPDA SEDCETTPLS CNHPFFTVIL SRSHVQKPFQ LYIPGRFHKH LPEERTSATL ICRGRSWAMR YCGDLKTKRL DADWMDFAVD NRLQVNDACV FELVTGTREE VVFQVQILRG GLPKDITSKG YTADEPLVIV G // ID T1NPX5_TRIUA Unreviewed; 160 AA. AC T1NPX5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_32822-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_32822-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_32822-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_32822-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_32822-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_32822-T1; TRIUR3_32822-P1; TRIUR3_32822. DR Gramene; TRIUR3_32822-T1; TRIUR3_32822-P1; TRIUR3_32822. DR OrthoDB; EOG093608CF; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 160 AA; 18161 MW; C73336E1BF2D5DD9 CRC64; PGCGGAGGAG CDCGDCEEWR RYCYWNHDHG TKQFLLFASH DKDHLCIPWE VSSQLRDMIP DSEPIKLETP DGRTYSVKFF KFGRITLTSG WRGFVDANHI EENNPMLFVY RGNSTFKVQI FNSSGRDKFL PCSQPPCNHR VLNEQVVPHP EHVDSSAHFG // ID T1NRI2_TRIUA Unreviewed; 173 AA. AC T1NRI2; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 10-MAY-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_33405-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_33405-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_33405-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_33405-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_33405-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_33405-T1; TRIUR3_33405-P1; TRIUR3_33405. DR Gramene; TRIUR3_33405-T1; TRIUR3_33405-P1; TRIUR3_33405. DR OMA; KNDGAAD; -. DR OrthoDB; EOG093618EA; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 134 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 134 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 173 AA; 18651 MW; 664E1D92A11C1F92 CRC64; MASGKATNHG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW GAQIYEKHSR DGDGKVWRFR YSYWNSSQSY VLTKGWSRFV KETGLRAGDT VAFYRSAYGN DTEDQLFIDY KKMNKNDDAA DAAISNENET GHVAVKLFGV DIAGGGMAGS SGG // ID T1NRS3_TRIUA Unreviewed; 612 AA. AC T1NRS3; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_33501-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_33501-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_33501-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_33501-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_33501-T1; TRIUR3_33501-P1; TRIUR3_33501. DR Gramene; TRIUR3_33501-T1; TRIUR3_33501-P1; TRIUR3_33501. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 520 612 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 612 AA; 68368 MW; 03488ED36FA708EB CRC64; GICSDALFRE LWHACAGPLI TVPRQGERVY YFPQGHMEQL EASTNQQLDQ YLPMFNLPSK ILCSVVNVEL RTEADSDEVY AQIMLQPEAN QGELTSLGPE PKELEKGTIH SFCKTLTASD TSTHGGFSVL RRHAEECLPP LDMSQNPPCQ ELVAKDLHGT DWHFRHIFRG QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRHMRQVNNM PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSQSE FVVSVNKYLE AKKQNISVGM RFKMKFEGDE ALERRFSGTI IGIGSTPTVS TSLWADSDWK SLKVQWDEPS SILRPDRVSP WELEPLDAAN PQPPQPPLRN KRPRLPASPS VVPELAPKFG LWKSPAEPSQ TLSFSEPQQA RGLFTNSRFS SSSNVAFNQF YWPARESRED SYAGSTNKVT VERKLEPAAG GCRLFGIEIR SAVEETQPVL TVSGDGYDQT AASVDVDSGE LSQPSNMNNS GAQAASSERA LLETQSRQVR SCTKVIMTGM AVGRAVDLTK LYGYVDLHRK LEEMFDIQGE LCSTLKKWQV VYADEEDDMM LVGDDPWDEF CNMAKRIYIY TYEEAKQLAP KA // ID T1NUB8_TRIUA Unreviewed; 958 AA. AC T1NUB8; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_34439-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_34439-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_34439-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_34439-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_34439-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_34439-T1; TRIUR3_34439-P1; TRIUR3_34439. DR Gramene; TRIUR3_34439-T1; TRIUR3_34439-P1; TRIUR3_34439. DR OMA; KNTHSAN; -. DR OrthoDB; EOG093603HH; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 416 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 896 958 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 321 416 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 896 958 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 958 AA; 106638 MW; 3B80CC2EE7CDD9AC CRC64; MPQSLTGEAS TYFSRPGRAA LLFRGEGVWR RERMSSGELA HQNRPRSRDT EMECEEEEED ETCKMLSEEE EEEVEMWDKK VQNRKAFTGS LEKGRRMEEP IELSDDADDN ETIMEMSKKA GKHKEKKRRH NDDGDHKKKK KSVSSHGGDK NTHSANRDKD KRRDMLLSPN KNKDPFHSKE KSRTMPSSHG GDGKMHPGDH HNDNKSSTMW RSEYDKYKGI PKKEMKKDKK PWPVHNGGSR EEEKKKTVLV LSKEGKMPVL DNSSNKGNKW KKTPMLYDKV KKPRTSDKDD KAGSYDRKKT TPGYNAGHKV QSGHGEKKKV KFAFFKVAGE HFEEFLLIPP KPAGASKMVG LTNQLVCLED SEGKSSMVRL SVVDGSLAFY QGWSNFVSDH SIKWAEIILF EYTGCSKFSV RVFGADSWER VSFTVETRGE EKKQKESYAP DDLAPCRCSR DIDGHHYVSG EYTRSNRPKT KSDGYTDNAE VSPGNLVAKS ANAVPGTRRM SANSIEDPNG VVGGIVGGSS MAPDNKDGHL ANGKHTGNAI FPSYIKATTR SPETVVIADE APLAQENKDT VALDNKEANL TIGECKTKCN ASITCNNEKA TRLDLVPVTI DAAPLSQENG DAVELMTFAG HIEDAVMMKE STSAKCAEIH GSDEDLRRKQ EGNTVRLECT AAADKFPSNN KMDTNGNACS KYEYPGGSQC LGKWKEATVS GRESLDGTEL IRPEKRLKTE EKLVGAMGVN PVERGYDGTH SCVPSQISES GLTRTKIEHS VNGKGATGKP ETKIEQVGPV ESIGCRQERN NISMSANRAV AHQTEHHFFR QEDAKSSNPA PPVPLLPVKV EVSELDDHRP VLKASLQFVV PSTTQTRLLC VEVYQELPDP LSNAVGRKGR LDRNIVMLKD PMKRLWPVFY HETSLFVGFT GGWKSFVAAN KLEAGDLCVL LMDLDEDELV YDVEITRK // ID T1NUJ5_TRIUA Unreviewed; 242 AA. AC T1NUJ5; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_34518-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_34518-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_34518-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_34518-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_34518-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_34518-T1; TRIUR3_34518-P1; TRIUR3_34518. DR Gramene; TRIUR3_34518-T1; TRIUR3_34518-P1; TRIUR3_34518. DR OMA; EVHVLKV; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 83 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 151 232 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 83 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 232 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 242 AA; 27291 MW; B710DF07923A094F CRC64; MRYTFGQYAS VASHAPLRVR GEAIQQPKNG TRPKQQSTLA RRQPLSSGGD PGRHRRLPSI TPAGGPPAAS TRQERREMDG VEGFQFFQII LENSSSRLRL PDKFTRVLLE GGKPQEVKLR DAGHGRRFWD VKVVLDADGH MYLGRGWGQN VPVEFQNAHG YAERSKVELR MRGKSWFVNL KHSPRERGRP RASLRYGWHQ FCVDNGLGVG DTCFFRALGE GSAGEVHVLK VEVRRRDGSY VD // ID T1NW75_TRIUA Unreviewed; 548 AA. AC T1NW75; DT 16-OCT-2013, integrated into UniProtKB/TrEMBL. DT 16-OCT-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_35130-P1}; OS Triticum urartu (Red wild einkorn) (Crithodium urartu). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4572 {ECO:0000313|EnsemblPlants:TRIUR3_35130-P1, ECO:0000313|Proteomes:UP000015106}; RN [1] {ECO:0000313|EnsemblPlants:TRIUR3_35130-P1, ECO:0000313|Proteomes:UP000015106} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. G1812 {ECO:0000313|EnsemblPlants:TRIUR3_35130-P1}; RX PubMed=23535596; DOI=10.1038/nature11997; RA Ling H.Q., Zhao S., Liu D., Wang J., Sun H., Zhang C., Fan H., Li D., RA Dong L., Tao Y., Gao C., Wu H., Li Y., Cui Y., Guo X., Zheng S., RA Wang B., Yu K., Liang Q., Yang W., Lou X., Chen J., Feng M., Jian J., RA Zhang X., Luo G., Jiang Y., Liu J., Wang Z., Sha Y., Zhang B., Wu H., RA Tang D., Shen Q., Xue P., Zou S., Wang X., Liu X., Wang F., Yang Y., RA An X., Dong Z., Zhang K., Zhang X., Luo M.C., Dvorak J., Tong Y., RA Wang J., Yang H., Li Z., Wang D., Zhang A., Wang J.; RT "Draft genome of the wheat A-genome progenitor Triticum urartu."; RL Nature 496:87-90(2013). RN [2] {ECO:0000313|EnsemblPlants:TRIUR3_35130-P1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (JUN-2015) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIUR3_35130-T1; TRIUR3_35130-P1; TRIUR3_35130. DR Gramene; TRIUR3_35130-T1; TRIUR3_35130-P1; TRIUR3_35130. DR OMA; TRRHCES; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000015106; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000015106}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000015106}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 346 442 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 346 442 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 548 AA; 62634 MW; EA77B5DF4723CCCE CRC64; IPQKFVENFE GQISEVIKLE APDGNIFNVQ ATKDLNKIVL GSGWGVFISF YEVKEGYFLV FRYMGASHFK VLVFDFASCC EKEVLHVLMN YGPSAQEKDI RLDQSPLSER RCQNGGSRNG GSHRRCEHCD VHFYWHHMDD RQKHFLRLMF GDFRQEISIP EKFVNNFRGR ISKVMKLEAP DGNVYNIQVI NDLNKIFLRS GWAAFASAYE LKEHDLLVFR YIGDSHFKVL IFDPSGCEKE LFHIVMNHTP NLQETGISHD QPFLKETRRH CESRDYNSRK TKKMTPLDSP SPRSAEGVKS PEDTLNSGGL RETTKPRYVL ATRCNLTTAQ KAEVDALVRK VRPAIPFYIT AMSKTSISGS LVICKDYAAK YLPDGDQFIT LCHPHKSNIW IDNLKVITDG SRMLSVGWSC FVLHNELRES DICLFEVWKS DGDVTMVVHS LEGGHHLQGK EPESQKKRRY PVKAEATEDE ESDKEHAESN YYYSRHANGL TSDEQEDIFR SALIQQGNPV YVAVLGKNHV KKGNNLLTIP RKFAAKHLAA RSHDILLL // ID U5CU84_AMBTC Unreviewed; 734 AA. AC U5CU84; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00057p00141830 {ECO:0000313|EMBL:ERN16861.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN16861.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392405; ERN16861.1; -; Genomic_DNA. DR EnsemblPlants; ERN16861; ERN16861; AMTR_s00057p00141830. DR Gramene; ERN16861; ERN16861; AMTR_s00057p00141830. DR OMA; ASSAENC; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 705 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 734 AA; 81487 MW; AE7C3C893C0B3C4B CRC64; MGSCGEGLKG LCPRVNGSSG GDGLSNVSSE PSGGFRDAND GLYTELWHAC AGPLVTVPQM GDKVFYFPQG HTEQVEKSTN QGADQPMPNY DLPSKILCRV VNVWLKAETD TDEVYAQLTL IPEPNQDETT LEKETVQSPP RRPHVYSFCK TLTASDTSTH GGFSVLRRHA EECLPRLDMS QQPPTQDLVA KDLHGVEWRF RHIFRGQPRR HLLTTGWSGF VSSKRLVAGD AFIFLRGENG ELRVGVRRAL RQQNNMPTSV ISSHSMHLGV LATAMHAFST GTMFSVYYRP RTSPSEFVIP YDQYMESVKN NYSIGMRFRM RFEGEETPEQ RFTGTIVGVE DYDSNRWPAS KWRCLKVQWD EQSSVERPLR VSPWKIEPSA APTAINPPPI PRAKRPRTNV PSPSDVSHLS REGLPRGMTE HSQLPRYPGV LQGQEGMALV GGPFSSGTNN PQSHQKSSMW APPLLPPKED PYPHPPHPNW MSLLRSESPF TDKNPPSHWA LSPFPGEKAW PPLGPTLLVG REDQKPLGGG LQSGGCKLFG INLFEHQTEV ASPGIAGFPS RGQQQVVLRT PPPVGLEGDQ VSEQSKGGGK SVDTGSDTDR PLPPKAQSAS TRSCTKVHMQ GNALGRSVDL TKFKGYKDLV AELDRMFGFE GELMDPMKGW QVVYTDDEGD MMLVGDDPWQ EFCVMVRKIY IYTREEVQRM RPRSMSQKGH DVGDHTHETV STPKETASSD ARNC // ID U5D833_AMBTC Unreviewed; 243 AA. AC U5D833; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN17562.1}; GN ORFNames=AMTR_s00059p00130960 {ECO:0000313|EMBL:ERN17562.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN17562.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392312; ERN17562.1; -; Genomic_DNA. DR EnsemblPlants; ERN17562; ERN17562; AMTR_s00059p00130960. DR Gramene; ERN17562; ERN17562; AMTR_s00059p00130960. DR OMA; DPQFPSF; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 243 AA; 27684 MW; FB96508619E27A4B CRC64; MAAVEPAYEE FRKQRLEENR RRMQELNLAA LSQTLKKSCP KPSPSKYCKP KTPRIDMGLV EVRRSSRVAA MPAASYKEVK YEYMEMPRRI YKRRALLDRS HISDGARTKA IERAEVLQSN LEPIYPSFVK PMLHSHVKVG FWLGLPVGFC KSNLPKNDAI ITLEDEDCNE FQTNFLAQKT GLSAGWRGFA IDHELNDGDA VVFQLVKPLK FKVMIWLSAS VIALVDLFKA LHSSQPKVIV VAY // ID U5FI93_POPTR Unreviewed; 287 AA. AC U5FI93; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP50908.1}; DE Flags: Fragment; GN ORFNames=POPTR_0017s08820g {ECO:0000313|EMBL:ERP50908.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP50908.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP50908.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000353; ERP50908.1; -; Genomic_DNA. DR RefSeq; XP_006373111.1; XM_006373049.1. DR STRING; 3694.POPTR_0017s08820.1; -. DR EnsemblPlants; POPTR_0017s08820.1; POPTR_0017s08820.1; POPTR_0017s08820. DR GeneID; 18107119; -. DR Gramene; POPTR_0017s08820.1; POPTR_0017s08820.1; POPTR_0017s08820. DR KEGG; pop:POPTR_0017s08820g; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR OMA; HEKPEAC; -. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000006729; Linkage group LGXVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 200 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 200 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ERP50908.1}. SQ SEQUENCE 287 AA; 32492 MW; F9CF64DECA6A9E5A CRC64; LMMMHQGMVH EKPEACAWMA GGEGVTEEGD NKQTPNIEGG SDLVIDGSNR DHLAGSMVGL EIKRKKRMPR QRRSSSTINH LLSFSANAID PRRLRFLFQK ELKNSDVSSL RRIILPKKAA EAHLPALESK EGIFIRMDDL DGLHAWSFKY RYWPNNNSRM YVLENTGDFV SAHGLELGDF IMVYQDNQSQ NYVIQAKKAS DQNVYTDIAR NAVNDFVVHD YEVSKLSSFY VNYPVVDNTG LSFIYDTTAF SNDSPLDFLG GSMTNFSRIG NLESFGSVEN LFLDDFY // ID U5FJ27_POPTR Unreviewed; 813 AA. AC U5FJ27; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0017s01870g {ECO:0000313|EMBL:ERP50259.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP50259.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP50259.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000353; ERP50259.1; -; Genomic_DNA. DR RefSeq; XP_006372462.1; XM_006372400.1. DR STRING; 3694.POPTR_0017s01870.1; -. DR EnsemblPlants; POPTR_0017s01870.1; POPTR_0017s01870.1; POPTR_0017s01870. DR GeneID; 18106532; -. DR Gramene; POPTR_0017s01870.1; POPTR_0017s01870.1; POPTR_0017s01870. DR KEGG; pop:POPTR_0017s01870g; -. DR eggNOG; ENOG410IEQ9; Eukaryota. DR eggNOG; ENOG410YA3R; LUCA. DR OMA; PHHQYLQ; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000006729; Linkage group LGXVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 710 794 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 813 AA; 91001 MW; 1260929552CCB161 CRC64; MKLSTSGLGG QQAGQEGEKK CLNSELWHAC AGPLVSLPTM GSRVVYFPQG HSEQVAATTN KEVDAHIPNY PSLPPQLICQ LHNVTMHADV ETDEVYAQMT LQPLTPQEQK ETFLPLDLGM PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELI ARDLHDVEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA TRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSCFTVFYN PRWASPSEFV IPLSKYVKAV FHIRVSVGMR FRMLFETEES SVRRYMGTIT GTSDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTSFPMYPS LFPLRLKRPW HPGSSSLLDE ASNGLIWLRG GSGEQGLPSL NFQANMLPWM QQRLDPTMLG NDHNQQYQAM LAAGMQNLGG GDPLRQQFMQ LQQPFQYPQQ SSSPNPLLQL QQQHQAMLQS IPHNILQPQN QISSDSLPRH LLQQQLNNQP DDQAQQHQHA YHDGLHIQTD LLQRQQSNLP SPSFSKTEYM DSSPKFTVST TPMQNILGSL CTEGSGNLLD FTRAGQSTLT EQLPQQSWVP KYAHHDVNAF SNSLSLPRTY PEKDLSVEAE NCNSDAQNPT FFGLLLPTTV PRYPTSTVDT DVSSMPLGDS GFQNSLYGCV QDSSELLPNA GQMDPPTPSR TFVKVYKSGS VGRSLDISRF SSYHELREEL AQMFGIEGKL ENPHRSGWQL VFVDRENDVL LLGDDPWELF VNNVWYIKIL SPEDVLKMGE QGFESSGPNA VKG // ID U5FLJ8_POPTR Unreviewed; 226 AA. AC U5FLJ8; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP51905.1}; DE Flags: Fragment; GN ORFNames=POPTR_0015s01760g {ECO:0000313|EMBL:ERP51905.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP51905.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP51905.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; ERP51905.1; -; Genomic_DNA. DR RefSeq; XP_006374108.1; XM_006374046.1. DR EnsemblPlants; POPTR_0015s01760.1; POPTR_0015s01760.1; POPTR_0015s01760. DR GeneID; 18105495; -. DR Gramene; POPTR_0015s01760.1; POPTR_0015s01760.1; POPTR_0015s01760. DR KEGG; pop:POPTR_0015s01760g; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 226 226 {ECO:0000313|EMBL:ERP51905.1}. SQ SEQUENCE 226 AA; 24557 MW; 8E0D4246B18A4EE6 CRC64; MARFSKVLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ AVHGSGRVWT FRCSNIRKKG HPKPVISKGW LAFVASKSLK GGDKVQFLKE KNEAGAKTHA YEIQAEKEIK IFGSNTITNN RVSHRLGGGQ SVNNTLNQHH HQQNQKFCHH RRAGKCNRFP CLSLHRELPA PPPHASVNGG GGARRGFTGN DSSSFSGRGL ISLGGVFGCV ISEGPWVFVG LPNVVK // ID U5FN48_POPTR Unreviewed; 241 AA. AC U5FN48; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP51629.1}; GN ORFNames=POPTR_0016s07540g {ECO:0000313|EMBL:ERP51629.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP51629.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP51629.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000352; ERP51629.1; -; Genomic_DNA. DR RefSeq; XP_006373832.1; XM_006373770.1. DR STRING; 3694.POPTR_0016s07540.1; -. DR EnsemblPlants; POPTR_0016s07540.1; POPTR_0016s07540.1; POPTR_0016s07540. DR GeneID; 18106190; -. DR Gramene; POPTR_0016s07540.1; POPTR_0016s07540.1; POPTR_0016s07540. DR KEGG; pop:POPTR_0016s07540g; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR OMA; LCPTSHD; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000006729; Linkage group LGXVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 26942 MW; 3CEF784593E95C9E CRC64; MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL SGDSVDKGLL LSFEDESGKY WRFRYSYWNS SQSYVLTKGW SRYVKEKQLD AGDAVLFERH RTDGDRLFIG WRRRGEMSSS SSANNSGVMV QGSGGGAWRR GLYSSPSSSG PYHLSGSNMQ HGHGANHDTE MGDFLGTQPG NSRRLRLFGV NLECQLDEAE PPTPDGSSLS SLQGPVHQQF YSQPAYSSNS THSQMGSTFS RDVKQMRNRR G // ID U5FNK9_POPTR Unreviewed; 205 AA. AC U5FNK9; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP52758.1}; GN ORFNames=POPTR_0014s03130g {ECO:0000313|EMBL:ERP52758.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP52758.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP52758.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP52758.1; -; Genomic_DNA. DR RefSeq; XP_006374961.1; XM_006374899.1. DR STRING; 3694.POPTR_0014s03130.1; -. DR EnsemblPlants; POPTR_0014s03130.1; POPTR_0014s03130.1; POPTR_0014s03130. DR GeneID; 18104913; -. DR Gramene; POPTR_0014s03130.1; POPTR_0014s03130.1; POPTR_0014s03130. DR KEGG; pop:POPTR_0014s03130g; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; HYERVMI; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 203 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 205 AA; 23312 MW; 9DF42501DC9FBCED CRC64; MVAKISAYEE SRRKRMEENK KRMEALNLHK LSRALKISTP TKSSPMKRSK PRVVEKQVVV VRRSSRCDTV LLRISKARDL SNRVYATDEA RAKAMEKAEK LQSDLGSDYP IFIKSMLQSH VTGGFWLGLP VDFCRRNLPR RDDVITLIDE EADEYQVIYL ARKNGLSGGW KGFAVAHGLL DGDAVVFQLI KPTACKVVVN MHQCY // ID U5FNQ1_POPTR Unreviewed; 713 AA. AC U5FNQ1; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP52813.1}; GN ORFNames=POPTR_0014s03610g {ECO:0000313|EMBL:ERP52813.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP52813.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP52813.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP52813.1; -; Genomic_DNA. DR RefSeq; XP_006375016.1; XM_006374954.1. DR EnsemblPlants; POPTR_0014s03610.2; POPTR_0014s03610.2; POPTR_0014s03610. DR GeneID; 18104959; -. DR Gramene; POPTR_0014s03610.2; POPTR_0014s03610.2; POPTR_0014s03610. DR KEGG; pop:POPTR_0014s03610g; -. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 492 590 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 492 590 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 713 AA; 80580 MW; B32DD22C5D8A4214 CRC64; MTKENQSEKM VNVVRRPCFF VIFSSNLSSE RLRIPVSFIK HMEGKTPGLV SLLGPSGDVW TADLTQENDD VLFSNGWSEF VRDHFLECGD LLVFRYHGEL CFSVQVFDQS ACEKEAAFHS KCSQGCSEFC GSTGKKRERE EEAASLEKDF VCARKKVREG SSEFHSAYIE KNREAHISAC DVGGCQHDGV LTTEESLSRQ TNQCGNPANC FATPSQSNAC SEKQEVPIWK RFGKDDDLKL HDRGHMSIFS EREKRVAESF ISCFPYFVRI MKRFNVSGSY TLNIPYQFSM AHLPNCRTEI ILRTIKGACW SVNSVPATRV HTSHTLCGGW MAFVRSNDIN VGDVCIFELV RKYELRVFIL RVGKEGPDME TGKVVSNGEN TGCHAIAHKT ESFPKKSRRN CLKVHSKLIK KAEICDKKEF EKSQATGILR HGNATKDSAS AVLFSMSQTR DGKKQAPIQN GKGVEAEAGL RRLVALDEER AAKSFTSGFP NFVRIMRKFN VSGSYTLKIP HQFSAAYLPN CKTEVILCNL QGRCWTVNSL PDSKGRAVHT FCGGWMAFVR DNNIKIGDIC MFELVGKCQM RCLAMILPHE VHGRVQPSLD MYEFYVSIFG EHYNARVSLL VRFFLHEFYV GFSYQAELLF ACVYQSVILV FEPRGGTRRW LKEVETFFKA RSVIRHFWGF MNLPPLIFHA TGSRPCNCHC TCYVSCLACS GNN // ID U5FP65_POPTR Unreviewed; 318 AA. AC U5FP65; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 25. DE SubName: Full=Transcriptional factor B3 family protein {ECO:0000313|EMBL:ERP52815.1}; GN ORFNames=POPTR_0014s03620g {ECO:0000313|EMBL:ERP52815.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP52815.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP52815.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP52815.1; -; Genomic_DNA. DR RefSeq; XP_006375018.1; XM_006374956.1. DR GeneID; 18104960; -. DR KEGG; pop:POPTR_0014s03620g; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 23 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 219 318 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 23 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 219 318 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 318 AA; 36779 MW; D8283967E6A67428 CRC64; MGEETCEDCR GWEEELYWTH FQCTHFFQIL SAGFDHQLPI PEKFSNHLKN KLLENVTLKG PSGSTWQVEL TTDDNTMFFK HGWEDFVKDH FLEEKDLLIF KYNGESYFDV LIFDGQSFCE KAASYFVRKC GHREGDSFVQ TKRKAVEDSV EVTNACPHNG LGGTPEKSAD GYIYKTPVRN SVVSKAINKK TRREVKMVTE QDKLNALRLA QTAQTNEGFV VVMKPTHVYR KFYMVIPSAW STRHFRTLEK KVVILRVKEN TWNTNFLYYK SKNSGGLSSG WKSFALDNNL QEFDVCLFEP SGTMNNSFVL DVNIFRVL // ID U5FPS3_POPTR Unreviewed; 683 AA. AC U5FPS3; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0014s09560g {ECO:0000313|EMBL:ERP53168.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP53168.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP53168.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP53168.1; -; Genomic_DNA. DR RefSeq; XP_006375371.1; XM_006375309.1. DR EnsemblPlants; POPTR_0014s09560.3; POPTR_0014s09560.3; POPTR_0014s09560. DR GeneID; 18105244; -. DR Gramene; POPTR_0014s09560.3; POPTR_0014s09560.3; POPTR_0014s09560. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 568 660 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 683 AA; 76019 MW; A5073AD0E3375AD3 CRC64; MAHAERGDDL YSELWKACAG PLVDVPKAGE RVFYFPQGHM EQLEASTNQE LNQQIPRFNL PPKILCRVVN IQLLAEQDTD EVYAQITLHP EVDQTRPTSP DPCPPEPAKQ TVHSFCKILT ASDTSTHGGF SVLRKHATEC LPPLDMSQAT PTQELAARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDSFV FLRGDNGELR VGLRRVARQQ CSIPSSVISS QSMHLGVLAT ASHAVLTHTL FVVYYKPRTN QYIIGLNKYL EAVKNGFSVG MRFKMRFEGE DTPERRFTGT IVGVGDISPE WSGSIWRSLK IQWDEPATIQ RPERVSPWDI EPFAAPASPN LTQQVVKSKR PRSVDIPTSA ASAFWYHGPT QSRELVQRGS ITEVQSSESH VWSMRQKEID SNLNNNGSCN SRARPEGIWP SSSHMNVSLN FFPDSAADNK CAKTQSIISG FASSISRQSN GLINEQVERG RKFENSVGCR LFGIDLTSNS GIAAVPEKEP AYPIVDYNGT QGLVPASSEA EKAQTMDVSM SSKEQKQVVP DTLAKESQSK QGSTTSTRTR TKVQMQGVAV GRALDLTVLK GYKDLINELE KMFETGGELS TREKWAVVFT DNEGDMMLVG DDPWPEFCKM VKKIFIYSSE EVKKMSTRCK LPASSFEGEG TVVSMESEHK SDA // ID U5FPT2_POPTR Unreviewed; 119 AA. AC U5FPT2; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP51971.1}; GN ORFNames=POPTR_0015s03590g {ECO:0000313|EMBL:ERP51971.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP51971.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP51971.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000351; ERP51971.1; -; Genomic_DNA. DR RefSeq; XP_006374174.1; XM_006374112.1. DR EnsemblPlants; POPTR_0015s03590.1; POPTR_0015s03590.1; POPTR_0015s03590. DR GeneID; 18105539; -. DR Gramene; POPTR_0015s03590.1; POPTR_0015s03590.1; POPTR_0015s03590. DR KEGG; pop:POPTR_0015s03590g; -. DR OMA; QEWIFSC; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGXV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 86 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 119 AA; 13546 MW; B562B36134DD6BDB CRC64; MTTLFSKLLT KADIENGLSI PASTLGPLPF QEGHSMNMHV HDGNGQEWIF SCSIKGNESV GRFLSVGWIE FVRERNLQVD DNVTILEEVM KNRVTGTWIK IEVKRKIRLF GKDIWADVK // ID U5FRI1_POPTR Unreviewed; 735 AA. AC U5FRI1; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP52814.1}; GN ORFNames=POPTR_0014s03610g {ECO:0000313|EMBL:ERP52814.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP52814.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP52814.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP52814.1; -; Genomic_DNA. DR RefSeq; XP_006375017.1; XM_006374955.1. DR EnsemblPlants; POPTR_0014s03610.1; POPTR_0014s03610.1; POPTR_0014s03610. DR GeneID; 18104959; -. DR Gramene; POPTR_0014s03610.1; POPTR_0014s03610.1; POPTR_0014s03610. DR eggNOG; ENOG410J0A0; Eukaryota. DR eggNOG; ENOG410YRPE; LUCA. DR OMA; FTGRKFR; -. DR OrthoDB; EOG09360DVE; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 385 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 514 612 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 385 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 514 612 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 735 AA; 83081 MW; 7ACB4C959B3D3AAD CRC64; MTKENQSEKM VNVVRRPCFF VIFSSNLSSE RLILDLLDIS LITGLTQSKL FTWQRIPVSF IKHMEGKTPG LVSLLGPSGD VWTADLTQEN DDVLFSNGWS EFVRDHFLEC GDLLVFRYHG ELCFSVQVFD QSACEKEAAF HSKCSQGCSE FCGSTGKKRE REEEAASLEK DFVCARKKVR EGSSEFHSAY IEKNREAHIS ACDVGGCQHD GVLTTEESLS RQTNQCGNPA NCFATPSQSN ACSEKQEVPI WKRFGKDDDL KLHDRGHMSI FSEREKRVAE SFISCFPYFV RIMKRFNVSG SYTLNIPYQF SMAHLPNCRT EIILRTIKGA CWSVNSVPAT RVHTSHTLCG GWMAFVRSND INVGDVCIFE LVRKYELRVF ILRVGKEGPD METGKVVSNG ENTGCHAIAH KTESFPKKSR RNCLKVHSKL IKKAEICDKK EFEKSQATGI LRHGNATKDS ASAVLFSMSQ TRDGKKQAPI QNGKGVEAEA GLRRLVALDE ERAAKSFTSG FPNFVRIMRK FNVSGSYTLK IPHQFSAAYL PNCKTEVILC NLQGRCWTVN SLPDSKGRAV HTFCGGWMAF VRDNNIKIGD ICMFELVGKC QMRCLAMILP HEVHGRVQPS LDMYEFYVSI FGEHYNARVS LLVRFFLHEF YVGFSYQAEL LFACVYQSVI LVFEPRGGTR RWLKEVETFF KARSVIRHFW GFMNLPPLIF HATGSRPCNC HCTCYVSCLA CSGNN // ID U5FSL2_POPTR Unreviewed; 689 AA. AC U5FSL2; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0014s09560g {ECO:0000313|EMBL:ERP53169.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP53169.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP53169.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP53169.1; -; Genomic_DNA. DR RefSeq; XP_006375372.1; XM_006375310.1. DR STRING; 3694.POPTR_0014s09560.1; -. DR EnsemblPlants; POPTR_0014s09560.1; POPTR_0014s09560.1; POPTR_0014s09560. DR GeneID; 18105244; -. DR Gramene; POPTR_0014s09560.1; POPTR_0014s09560.1; POPTR_0014s09560. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR OMA; HEANPSL; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 574 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 689 AA; 76675 MW; 33C2A3DEE6974EEA CRC64; MAHAERGDDL YSELWKACAG PLVDVPKAGE RVFYFPQGHM EQLEASTNQE LNQQIPRFNL PPKILCRVVN IQLLAEQDTD EVYAQITLHP EVDQTRPTSP DPCPPEPAKQ TVHSFCKILT ASDTSTHGGF SVLRKHATEC LPPLDMSQAT PTQELAARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDSFV FLRGDNGELR VGLRRVARQQ CSIPSSVISS QSMHLGVLAT ASHAVLTHTL FVVYYKPRTN QYIIGLNKYL EAVKNGFSVG MRFKMRFEGE DTPERRFTGT IVGVGDISPE WSGSIWRSLK IQWDEPATIQ RPERVSPWDI EPFAAPASPN LTQQVVKSKR PRSVDIPTSE ITTNPAASAF WYHGPTQSRE LVQRGSITEV QSSESHVWSM RQKEIDSNLN NNGSCNSRAR PEGIWPSSSH MNVSLNFFPD SAADNKCAKT QSIISGFASS ISRQSNGLIN EQVERGRKFE NSVGCRLFGI DLTSNSGIAA VPEKEPAYPI VDYNGTQGLV PASSEAEKAQ TMDVSMSSKE QKQVVPDTLA KESQSKQGST TSTRTRTKVQ MQGVAVGRAL DLTVLKGYKD LINELEKMFE TGGELSTREK WAVVFTDNEG DMMLVGDDPW PEFCKMVKKI FIYSSEEVKK MSTRCKLPAS SFEGEGTVVS MESEHKSDA // ID U5FSN5_POPTR Unreviewed; 405 AA. AC U5FSN5; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP53194.1}; GN ORFNames=POPTR_0014s10290g {ECO:0000313|EMBL:ERP53194.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP53194.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP53194.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP53194.1; -; Genomic_DNA. DR RefSeq; XP_006375397.1; XM_006375335.1. DR EnsemblPlants; POPTR_0014s10290.1; POPTR_0014s10290.1; POPTR_0014s10290. DR GeneID; 18105255; -. DR Gramene; POPTR_0014s10290.1; POPTR_0014s10290.1; POPTR_0014s10290. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; HQVVEKE; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 405 AA; 46196 MW; FE276742F4DC7E3E CRC64; MNFVGGERGY FDKEEQEEEE AMSSKLPFAS PCTSSSSSKY KNFLPEHQNL WPRLFDQPRQ DSETQEPSLN FVKKLEFMEL SLGNNNESES SSTDAGGGAS ESIEREHMFD KVVTPSDVGK LNRLVIPKQH AERYFPLDSS SNEKGLLLNF EDRNGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLYAGD IVSFQRGVGE TGKHRLFIDW RRRPNAPDPT SFSHLELQNQ LHYPQSLRWG RLYSMPQSNL PMQQPQLQHL NYSIHPYQQH QHHNHQYHYH QPSNISYGNA AQYYLRPPAS TLPIGAVHEQ GGSHVPVVID SVPVVHGKTV GKRLRLFGVN MECPTQNDPS SSVTMIRHGT LDSLSPRLAS SSLPPPFQVR EPTGAPMQAE FSKKGKASLS FDLDL // ID U5FTR4_POPTR Unreviewed; 118 AA. AC U5FTR4; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP54445.1}; GN ORFNames=POPTR_0012s02030g {ECO:0000313|EMBL:ERP54445.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP54445.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP54445.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; ERP54445.1; -; Genomic_DNA. DR RefSeq; XP_006376648.1; XM_006376586.1. DR EnsemblPlants; POPTR_0012s02030.1; POPTR_0012s02030.1; POPTR_0012s02030. DR GeneID; 18103643; -. DR Gramene; POPTR_0012s02030.1; POPTR_0012s02030.1; POPTR_0012s02030. DR KEGG; pop:POPTR_0012s02030g; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 118 AA; 13399 MW; 683720F51711D12B CRC64; MARFSKILSK TDIKKRLTVP IKFLKSLPSF DGGHALKFEA RDEGGEAWAF QCSVRRRGHP KPVLTRGWKE FINSKKLKTG DKVSFIKCKN RATAKTSYRV RAEKEIKIFG AIIGYAPL // ID U5FTX0_POPTR Unreviewed; 227 AA. AC U5FTX0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP52757.1}; GN ORFNames=POPTR_0014s03120g {ECO:0000313|EMBL:ERP52757.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP52757.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP52757.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP52757.1; -; Genomic_DNA. DR RefSeq; XP_006374960.1; XM_006374898.1. DR STRING; 3694.POPTR_0014s03120.1; -. DR EnsemblPlants; POPTR_0014s03120.1; POPTR_0014s03120.1; POPTR_0014s03120. DR GeneID; 18104912; -. DR Gramene; POPTR_0014s03120.1; POPTR_0014s03120.1; POPTR_0014s03120. DR KEGG; pop:POPTR_0014s03120g; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; MPAPVYK; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 145 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 145 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 227 AA; 25505 MW; 02607ADBEEDF8D8B CRC64; MAAKVTAYEE SRRKRMEENK KRMEALNLHK LSRALKISTP TKSSPLKRSK PRVVEKQVVV VRRSNRIANK PAPFFKEAVI DRVVIPRRIS KAADLSNLVF ATDEARAKAI EKAEKLQSDL GSDYPTFIKS MLQSHVTGGF WLGCLPLDFC RRNLPRRGDF ITLIDEDADE YQVTYLARQN GLSGGWKGFA VAHGLLDGDA VVFQLIKPTT CKVYIIRVNG SEQGNSL // ID U5FV32_POPTR Unreviewed; 672 AA. AC U5FV32; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0014s09560g {ECO:0000313|EMBL:ERP53167.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP53167.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP53167.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP53167.1; -; Genomic_DNA. DR RefSeq; XP_006375370.1; XM_006375308.1. DR EnsemblPlants; POPTR_0014s09560.2; POPTR_0014s09560.2; POPTR_0014s09560. DR GeneID; 18105244; -. DR Gramene; POPTR_0014s09560.2; POPTR_0014s09560.2; POPTR_0014s09560. DR KEGG; pop:POPTR_0014s09560g; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR KO; K14486; -. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 557 649 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 672 AA; 74795 MW; FBF8CBBACA867A35 CRC64; MAHAERAGDD LYSELWKACA GPLVDVPKAG ERVFYFPQGH MEQLEASTNQ ELNQQIPRFN LPPKILCRVV NIQLLAEQDT DEVYAQITLH PEVDQTRPTS PDPCPPEPAK QTVHSFCKIL TASDTSTHGG FSVLRKHATE CLPPLDMSQA TPTQELAARD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRGDNGEL RVGLRRVARQ QCSIPSSVIS SQSMHLGVLA TASHAVLTHT LFVVYYKPRT NQYIIGLNKY LEAVKNGFSV GMRFKMRFEG EDTPERRFTG TIVGVGDISP EWSGSIWRSL KIQWDEPATI QRPERVSPWD IEPFAAPASP NLTQQVVKTA SAFWYHGPTQ SRELVQRGSI TEVQSSESHV WSMRQKEIDS NLNNNGSCNS RARPEGIWPS SSHMNVSLNF FPDSAADNKC AKTQSIISGF ASSISRQSNG LINEQVERGR KFENSVGCRL FGIDLTSNSG IAAVPEKEPA YPIVDYNGTQ GLVPASSEAE KAQTMDVSMS SKEQKQVVPD TLAKESQSKQ GSTTSTRTRT KVQMQGVAVG RALDLTVLKG YKDLINELEK MFETGGELST REKWAVVFTD NEGDMMLVGD DPWPEFCKMV KKIFIYSSEE VKKMSTRCKL PASSFEGEGT VVSMESEHKS DA // ID U5FV56_POPTR Unreviewed; 328 AA. AC U5FV56; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP53192.1}; GN ORFNames=POPTR_0014s10290g {ECO:0000313|EMBL:ERP53192.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP53192.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP53192.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). RN [2] {ECO:0000313|EMBL:ERP53192.1} RP NUCLEOTIDE SEQUENCE. RG US DOE Joint Genome Institute (JGI-PGF); RA Shu S., Lucas S., Jenkins J., Grimwood J., Muchero w., Hayes R., RA Goodstein D., Rokhsar D., Schmutz J., Tuskan G.; RL Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000350; ERP53192.1; -; Genomic_DNA. DR EMBL; CM000350; ERP53193.1; -; Genomic_DNA. DR RefSeq; XP_006375395.1; XM_006375333.1. DR RefSeq; XP_006375396.1; XM_006375334.1. DR EnsemblPlants; POPTR_0014s10290.2; POPTR_0014s10290.2; POPTR_0014s10290. DR EnsemblPlants; POPTR_0014s10290.3; POPTR_0014s10290.3; POPTR_0014s10290. DR GeneID; 18105255; -. DR Gramene; POPTR_0014s10290.2; POPTR_0014s10290.2; POPTR_0014s10290. DR Gramene; POPTR_0014s10290.3; POPTR_0014s10290.3; POPTR_0014s10290. DR KEGG; pop:POPTR_0014s10290g; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR Proteomes; UP000006729; Linkage group LGXIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 328 AA; 37204 MW; 5A13FE8AEA283FC6 CRC64; MELSLGNNNE SESSSTDAGG GASESIEREH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DSSSNEKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKRLY AGDIVSFQRG VGETGKHRLF IDWRRRPNAP DPTSFSHLEL QNQLHYPQSL RWGRLYSMPQ SNLPMQQPQL QHLNYSIHPY QQHQHHNHQY HYHQPSNISY GNAAQYYLRP PASTLPIGAV HEQGGSHVPV VIDSVPVVHG KTVGKRLRLF GVNMECPTQN DPSSSVTMIR HGTLDSLSPR LASSSLPPPF QVREPTGAPM QAEFSKKGKA SLSFDLDL // ID U5FVV3_POPTR Unreviewed; 740 AA. AC U5FVV3; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0011s05830g {ECO:0000313|EMBL:ERP55225.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP55225.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP55225.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000347; ERP55225.1; -; Genomic_DNA. DR RefSeq; XP_006377428.1; XM_006377366.1. DR STRING; 3694.POPTR_0011s05830.1; -. DR EnsemblPlants; POPTR_0011s05830.1; POPTR_0011s05830.1; POPTR_0011s05830. DR GeneID; 18103082; -. DR Gramene; POPTR_0011s05830.1; POPTR_0011s05830.1; POPTR_0011s05830. DR KEGG; pop:POPTR_0011s05830g; -. DR eggNOG; ENOG410IE2Y; Eukaryota. DR eggNOG; ENOG410YC80; LUCA. DR KO; K14486; -. DR OMA; QSPRLYE; -. DR OrthoDB; EOG09360774; -. DR Proteomes; UP000006729; Linkage group LGXI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 154 256 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 154 256 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 740 AA; 81201 MW; 1C1C59059C922FDA CRC64; MVGMIDLNTI EEDETTPSCG SLSSPSSSSA ASALSASGSG SSTSSVCLEL WHACAGPLIS LPKRGSVVVY FPQGHLEQLP DLPLAVYDLP SHVFCRVVDV KLHAEAASDE VYAQVSLVPE SEEIEQKLRE GIFEGDGEEE DGEATVKMTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYTQQRP SQELVAKDLH GSEWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL GVRRAAQVKC GPTFPAQWNH QLNQISPGDV ANAISTRSFF HIYYNPRASS SEFIIPFNKF LKSLDQSFSS GMRFKMRFET EDAAERRYTG IITGVSELDP ARWPGSKWKC LLVRWDDMEA NRLSRVSPWE VEPSGSGSFS SSNNFTAPGL KRSRSGLPSS KAEFPIPDGI GAPDFRESSR SQEVLQGQEI MSFNALYDGV DGQNQHPSEI RSCFPGYHSS GIAALGSGIR DSIATSNNSY KGIGFNESYR FHKVFQGQEI FPSSPYGRIP NANEARENCS LGFSDGVQRS SSSSRNGWST LMQGYNTQIR PPAQVSSPSS VLMFQHASNP VPKPSSNFNF NDHVQQTATT RSWFCGPEMQ GGDFKLPAHS EPSVKRGGQW SNSPFGLSHE HLQHGVSQPI VAQSAFRGSQ DLVSCKSSCR LFGFSLTEDK CLVNKEDNMT LITSPLNPGS SFLPRAGEHF HPKPPAINNA VGSSCTEAIL QTRAENYRIY // ID U5FWZ0_POPTR Unreviewed; 155 AA. AC U5FWZ0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP54446.1}; GN ORFNames=POPTR_0012s02050g {ECO:0000313|EMBL:ERP54446.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP54446.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP54446.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000348; ERP54446.1; -; Genomic_DNA. DR RefSeq; XP_006376649.1; XM_006376587.1. DR EnsemblPlants; POPTR_0012s02050.1; POPTR_0012s02050.1; POPTR_0012s02050. DR GeneID; 18103644; -. DR Gramene; POPTR_0012s02050.1; POPTR_0012s02050.1; POPTR_0012s02050. DR KEGG; pop:POPTR_0012s02050g; -. DR Proteomes; UP000006729; Linkage group LGXII. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 119 147 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 91 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 91 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 155 AA; 18253 MW; 8CFD093FC7A25398 CRC64; MAKFSKLVTK TDIHKRLSMR SSHVRDFPEI DESGFVWTFQ CSTRKKGHPK PVLAKGWLTF VRHKELKAGD RVKFFKVKDQ SDTATPFYRI EAEKEIKIFG CRHNFYFNMV LEASRNFNLV SLFTFIQVFH LNFVVILTNS IVFLQFVKCF DGNFN // ID U5FY85_POPTR Unreviewed; 454 AA. AC U5FY85; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP55099.1}; DE Flags: Fragment; GN ORFNames=POPTR_0011s04340g {ECO:0000313|EMBL:ERP55099.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP55099.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP55099.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000347; ERP55099.1; -; Genomic_DNA. DR RefSeq; XP_006377302.1; XM_006377240.1. DR STRING; 3694.POPTR_0011s04340.1; -. DR EnsemblPlants; POPTR_0011s04340.1; POPTR_0011s04340.1; POPTR_0011s04340. DR GeneID; 18102973; -. DR Gramene; POPTR_0011s04340.1; POPTR_0011s04340.1; POPTR_0011s04340. DR KEGG; pop:POPTR_0011s04340g; -. DR eggNOG; ENOG410IWFV; Eukaryota. DR eggNOG; ENOG410YR6E; LUCA. DR OMA; CASAHEE; -. DR OrthoDB; EOG0936054P; -. DR Proteomes; UP000006729; Linkage group LGXI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 307 408 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 307 408 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 454 454 {ECO:0000313|EMBL:ERP55099.1}. SQ SEQUENCE 454 AA; 50716 MW; CD10ACE7F1A0E6F4 CRC64; MQRANLELDQ KCFNSDCTDF KSRKGWRLRS GDFADLCDRC ASAHEEGRFC ETFHSNASGW RSCESCGKRV HCGCIVSLQA FTLLDAGGIA CMACARKSFV LTPNPAWPLF YHSPFPERLK DLSVKSWSQL AGSGPVPWRQ APSLFNSSAT QSELQPRMPH EVDRLNAGER FSALSLEKRK LEDFPERFIN GSPRNHLQDI VENGNAGKEC MMTWHFHAAM LESVLKGQIE GSVNPLLPAP LPLFAKRVHG TLHKGVDSSV DGQIRNGRPR IDARGKSQLL PRYWPRFTDE ELQQISGNPN SVIKPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLRVQDSK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDIVT FSRLEPEGKL VMGFRKASSA SLSDQAELGP SPWSKVDKSG YIAKEVLEAK SSIKKRKSST LGSK // ID U5FYF9_POPTR Unreviewed; 292 AA. AC U5FYF9; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP55174.1}; GN ORFNames=POPTR_0011s05380g {ECO:0000313|EMBL:ERP55174.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP55174.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP55174.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000347; ERP55174.1; -; Genomic_DNA. DR RefSeq; XP_006377377.1; XM_006377315.1. DR STRING; 3694.POPTR_0011s05380.1; -. DR EnsemblPlants; POPTR_0011s05380.1; POPTR_0011s05380.1; POPTR_0011s05380. DR GeneID; 18103038; -. DR Gramene; POPTR_0011s05380.1; POPTR_0011s05380.1; POPTR_0011s05380. DR KEGG; pop:POPTR_0011s05380g; -. DR eggNOG; ENOG410JDJ2; Eukaryota. DR eggNOG; ENOG41116MG; LUCA. DR OrthoDB; EOG09360FID; -. DR Proteomes; UP000006729; Linkage group LGXI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 292 AA; 33044 MW; 4AE656CB85C18E45 CRC64; MLAHYPSTPS SSLTQSNYFA PQYYTTPPCE TTQFPSTDSL DQRSQYTPAA DPFYPVMVGQ NAIEMQRSCI LQPNALQLEQ ERRALDAYKT KVARCMRKLA RQRRLGRASS GASSTRITDA SRLALHGAGT DGQNSRTNTS KDLFEFLTPD NKKLRALLRK DLKNSDVGSL GRIVLPKREV EENLPPLHDK EGILLVLRDI YSNQEWGLKL KFWTNNKSRM YVLENTGEFV KRHGLETGDS LTLYEDESKN LRSVQDWPVL PSREDNPDEA EAVFLYHKGA ETRISPSSNT TP // ID U5FZW8_POPTR Unreviewed; 352 AA. AC U5FZW8; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP55679.1}; GN ORFNames=POPTR_0011s15270g {ECO:0000313|EMBL:ERP55679.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP55679.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP55679.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000347; ERP55679.1; -; Genomic_DNA. DR RefSeq; XP_006377882.1; XM_006377820.1. DR EnsemblPlants; POPTR_0011s15270.1; POPTR_0011s15270.1; POPTR_0011s15270. DR GeneID; 18103453; -. DR Gramene; POPTR_0011s15270.1; POPTR_0011s15270.1; POPTR_0011s15270. DR KEGG; pop:POPTR_0011s15270g; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; PDHASHH; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006729; Linkage group LGXI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 39272 MW; 73A5C03C9BAD0ABD CRC64; MEFGSGFSEE DQISRGKGLP FSSYSSSSSP SSSSSHQKTQ LVVPLGQIFE NHQMGSWLGN KYDQEDQDTS RFDESGASTA AKLDLMDVND DEEGGRGESS CVVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS SSNEKGLLLN FEDRNGKAWT FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGVG ELGKDRLYID WRRRPDAPDH ASHHQLYHHN LPFSSIPWSP LLMRPPTAPI LPRDHLHLSN PNRNAYYNVG GSYYGHGYGN YNNVVNPCSS SESVFYMRSS AGAAVEPTPQ QVGMGMVQWQ LGGGGVVEPV VYESVPVVQG KAAAKKLRLF DI // ID U5G0R3_POPTR Unreviewed; 260 AA. AC U5G0R3; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP57000.1}; GN ORFNames=POPTR_0009s10600g {ECO:0000313|EMBL:ERP57000.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP57000.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP57000.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; ERP57000.1; -; Genomic_DNA. DR RefSeq; XP_006379203.1; XM_006379141.1. DR EnsemblPlants; POPTR_0009s10600.2; POPTR_0009s10600.2; POPTR_0009s10600. DR GeneID; 18102111; -. DR Gramene; POPTR_0009s10600.2; POPTR_0009s10600.2; POPTR_0009s10600. DR KEGG; pop:POPTR_0009s10600g; -. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 260 AA; 29846 MW; 8C79AA147570EA1A CRC64; MAKSKQTYEE IRQKRVEENK KRMEELNLTK LSQSLLSKPS PLKKGKPRTF RPAAALTPVR RSTRVSDRPT VSYKELPVET LERTRRSYSY RRRGFGVYAS SEARAYAIDK AEQIQSRLGA DFPSFLKPMV QSHVSGCFWL GLPVYFCKSH LPLSDEMMTL EDENGDEFQT KYLAQKTGLS GGWRGFSIDH ELVDGDALVF QLVSPTRFKV YIARAYDSED NENKEDMEED NEGKENIDND KNSDSKHLDG IAKRTRASRK // ID U5G3W5_POPTR Unreviewed; 381 AA. AC U5G3W5; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP57014.1}; GN ORFNames=POPTR_0009s11170g {ECO:0000313|EMBL:ERP57014.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP57014.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP57014.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; ERP57014.1; -; Genomic_DNA. DR RefSeq; XP_006379217.1; XM_006379155.1. DR SMR; U5G3W5; -. DR STRING; 3694.POPTR_0009s11170.1; -. DR EnsemblPlants; POPTR_0009s11170.1; POPTR_0009s11170.1; POPTR_0009s11170. DR GeneID; 7457510; -. DR Gramene; POPTR_0009s11170.1; POPTR_0009s11170.1; POPTR_0009s11170. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR OMA; CILQFDE; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 277 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 277 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43659 MW; ABBFAB6589D75662 CRC64; MPRPFFQKLI LSSTIREKRL RIPDNFVKKF GHDISSFVRL IVPGGHVSRI GLIKADDKLW FHDGWQQFVE RFAIHVGYFL IFRYEGNAIF NVHIFNLPTS EINYHSNSLS GKRYLAFEEL DNDENAENSG IPPPQLIVNK SYNPPSLQNL FSGSKLNNCI NWSGEDTMRL TKGSNISQVA NESARNVGAH YNELYNSQDE VKLYSPDGET PKPKKRGRKR LKADPNEQQL SSPHDDDSEM RFRFYESASA RKRTVTAEER ERAMNAAKAY APDNPYCRVV LRPSYLYRGC IMYLPSGFAE KNLNGVSGFI ILQLPDGKQW PVRCLYRGGR AKFSQGWYEF TLENNLGEGD VCIFELLKSR DVVLKVTLFR VLEDGGLMNH P // ID U5G3Z3_POPTR Unreviewed; 278 AA. AC U5G3Z3; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP57001.1}; GN ORFNames=POPTR_0009s10600g {ECO:0000313|EMBL:ERP57001.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP57001.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP57001.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000345; ERP57001.1; -; Genomic_DNA. DR RefSeq; XP_006379204.1; XM_006379142.1. DR STRING; 3694.POPTR_0009s10600.1; -. DR EnsemblPlants; POPTR_0009s10600.1; POPTR_0009s10600.1; POPTR_0009s10600. DR GeneID; 18102111; -. DR Gramene; POPTR_0009s10600.1; POPTR_0009s10600.1; POPTR_0009s10600. DR eggNOG; ENOG410IIZT; Eukaryota. DR eggNOG; ENOG4111SA1; LUCA. DR OMA; MENKRIM; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000006729; Linkage group LGIX. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31805 MW; BFF0CB8AB6117035 CRC64; MAKSKQTYEE IRQKRVEENK KRMEELNLTK LSQSLLSKPS PLKKGKPRTF RPAAALTPVR RSTRVSDRPT VSYKELPVET LERTRRSYSY RRRGFGVYAS SEARAYAIDK AEQIQSRLGA DFPSFLKPMV QSHVSGCFWL GLPVYFCKSH LPLSDEMMTL EDENGDEFQT KYLAQKTGLS GGWRGFSIDH ELVDGDALVF QLVSPTRFKV YIARAYDSED NENKEDMEED NEGKENIDND KNSDSKHLDG IAKRTRASNC FSTLQNLQKF SMIGNQST // ID U5G4U3_POPTR Unreviewed; 271 AA. AC U5G4U3; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP58533.1}; GN ORFNames=POPTR_0007s11890g {ECO:0000313|EMBL:ERP58533.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP58533.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP58533.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000343; ERP58533.1; -; Genomic_DNA. DR RefSeq; XP_006380736.1; XM_006380674.1. DR STRING; 3694.POPTR_0007s11890.1; -. DR EnsemblPlants; POPTR_0007s11890.1; POPTR_0007s11890.1; POPTR_0007s11890. DR GeneID; 18101201; -. DR Gramene; POPTR_0007s11890.1; POPTR_0007s11890.1; POPTR_0007s11890. DR KEGG; pop:POPTR_0007s11890g; -. DR eggNOG; ENOG410J303; Eukaryota. DR eggNOG; ENOG410Z9I2; LUCA. DR OMA; SHESWLC; -. DR OrthoDB; EOG09360YM3; -. DR Proteomes; UP000006729; Linkage group LGVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 151 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 271 AA; 30711 MW; BA38546BB4BE6230 CRC64; MVKPKRNVSF SNEFFKVYLS DFSSRQLSLP PAFGIQFNGK NEALPKNATL KDGNAKIWQV GLVKREGDWV IKDGWKEFAC YHSLVDGDFL IFKYDGSSEF EVELYGNDGL KNNGLKKEGL FGKSGPKSSE TKIAKLGECK GAKAPSSVPR EVPRFVMNIT KITRFARIPK KFLRENNIEL PKEIKLRDES GKLWPVQTSL WDSGYTVLTS GFSEFCRMNK LVPRDQCVFT FICSKGNLCN VIQSRAEKWK DSLEMLTVLT DQAMQTIYAT V // ID U5G614_POPTR Unreviewed; 1119 AA. AC U5G614; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0006s07740g {ECO:0000313|EMBL:ERP58963.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP58963.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP58963.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP58963.1; -; Genomic_DNA. DR RefSeq; XP_006381166.1; XM_006381104.1. DR STRING; 3694.POPTR_0006s07740.1; -. DR EnsemblPlants; POPTR_0006s07740.1; POPTR_0006s07740.1; POPTR_0006s07740. DR GeneID; 18099958; -. DR Gramene; POPTR_0006s07740.1; POPTR_0006s07740.1; POPTR_0006s07740. DR KEGG; pop:POPTR_0006s07740g; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; AVYSHQI; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1007 1091 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1119 AA; 123736 MW; E7E31378E3826B10 CRC64; MKSPATGAGG TATTSTATNG EGAEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ VAASMKKDVD AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLQPV SSFDKDALLR SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLNFSLQP PAQELVARDL HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKAVYSNQI SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS IWEIEPVTAP FFICPPPFFR SKRPRQPGMP DDDSSDFDSL FKRTMPWLGD EFCMKDPQAL PGLSLVQWMN MQQNPSLANS MQPNYMQSLS GSVLQNLPGA DLSRQLGLSS PQMPQPNNVQ FNAQRLPQQA QQLDQLPKLQ SSLIPLGSIM QPQQQMGDIT QQSRQNLMAQ TLPSSQVQAQ LLQPQTLAQT NNILQQQPSI QSHQLLRNLP QTLHHQQQQN QQQHIMGQNQ QQSLMQSQLS DHVNQHMQIS DNHIQLQLLQ KLQQQQQSLL AQQSAMQQAG QLGQLQDSQR QLLDASQSFS RSMAPSQMLE IPQTAPTSLP QPNTIPQQLT KNNNQNNVRF SHPPQQPKLQ QQHTGILPLS EMAGHMGLLP SSMANQLSAA GSSILTAAAG QGQSGITDDV PSCSTSPSTN NCPNIVQPMI NSRAHRSTAM GEDMAQSAAT LLNPSALETV SSNGNLVKDL LQKSEVKPSL NISKNQSPGF FTPQTYLNGV AAQTDYLDTS SSTTSICLSQ NDVHLQQNNN SLSYNPQPML LRDTIHDGEL QADLRNNIPC GTNIDSQLTM PVSSDNLFTK GMVGLGKDFS NNFSSAGMLT SCENSKDPQQ DLSSSMVSQS FGVPEMPFNS INSAINDNSC LNRGAWAPPQ QQFQRMRTYT KVYKRGAVGR SIDIARYSGY AELKQDLARR FGIEGQFEDQ QRIGWKLVYR DLDDDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGNSVLPNQA CSSSDNVNA // ID U5G739_POPTR Unreviewed; 705 AA. AC U5G739; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0006s12930g {ECO:0000313|EMBL:ERP59245.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59245.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59245.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59245.1; -; Genomic_DNA. DR RefSeq; XP_006381448.1; XM_006381386.1. DR STRING; 3694.POPTR_0006s12930.1; -. DR EnsemblPlants; POPTR_0006s12930.1; POPTR_0006s12930.1; POPTR_0006s12930. DR GeneID; 18100187; -. DR Gramene; POPTR_0006s12930.1; POPTR_0006s12930.1; POPTR_0006s12930. DR KEGG; pop:POPTR_0006s12930g; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OMA; NLDKMAN; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 619 697 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 705 AA; 77779 MW; 2351204C86A5094A CRC64; MITFMEAKDK LKEEADKCLD SQLWHACAGG MVQMPAVNSK VFYFPQGHAE HACEPVDFRN LPRVSHNLCR VSDIKFMADP ETDEVFAKIR LVPINSNELD LDDQEVAVNG GMEAAQDNNK PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYTADPP VQTLLAKDVH GETWKFRHIY RGTPRRHLLT TGWSPFVNHK KLIAGDSVVF FRAENGDLCV GVRRAKRASG GGPESLWNPA GGSSAVPSGG FGAFLREDEH KLMRSASGNG NGSKSNESLM GQGKVRAESV IQAVTLAANG LPFEVVYYPR ANTPEFCVKA SLVKTAMQIR WCSGMRFKMA FETEDSSRIS WFMGTVCSVQ AADSLWWPHS PWRLLQVTWD EPDLLQNVKR VSPWLVELAS NMAAIHFPPF SSPRKKLRLP QHLDFPIDGQ FPMPIFSGNL LGPSSSFDFL PHNTPAGMQG ARHAHYGLPL SDPHLNKLQT GLLRTGFPPL LDHTASLTKA SNVQTIPKPS MCEDVSCELT MAHSTQTSKK AVDVKIPQLV LFGQPILAEQ QISLSCPGNA ASPVLTGNSS SEGNLDKMAN FSDGSVSTLH RRGLPECSSC EELQWNKDKH QKSEPSLETG HCKVFMDSED VGRTLDLSLL GSYEELYRKL ANMFGLRNSE KFSNVLYRDI NGITKHIGEE PFSDFFKTAR RLTIVTDSSS GNVGI // ID U5G7H5_POPTR Unreviewed; 1157 AA. AC U5G7H5; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0006s14070g {ECO:0000313|EMBL:ERP59380.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59380.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59380.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59380.1; -; Genomic_DNA. DR RefSeq; XP_006381583.1; XM_006381521.1. DR STRING; 3694.POPTR_0006s14070.1; -. DR EnsemblPlants; POPTR_0006s14070.1; POPTR_0006s14070.1; POPTR_0006s14070. DR GeneID; 18100300; -. DR Gramene; POPTR_0006s14070.1; POPTR_0006s14070.1; POPTR_0006s14070. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1005 1098 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1157 AA; 129441 MW; 71BE2C5123187666 CRC64; MKVPSNGFLP NFAEGERKCI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADVETD EVYAQMTLQP VSKYEKEALL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPFS KYNKALYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDM DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYIYPPPFFR PKFPKQPGMP DDDSDIENAF KRAMPWLGDE FGMKDPPSSI FPGLSLVQWM SMQQNNQFPA TQSGLFPSMV PSNALHNNLS TDDPSKVLNF QAPGLSPPSV QLNKTNPQNQ VGQLPQPPMA WTQQQQLQQL LQTPINQQLQ QLLQTPINQQ QPPYPHQQQQ QPISQQQQHQ HWPQQQQQPQ LQPPQIRQPP PQIQQHQQQQ QIFQPPTLND SVVAPNQIPN QNLQQPVVYS QLQQQQQLLA SNTQSQSIPS ANKSSYPLTS LPQDSQLHQQ MEQQSNLSQR QQQQTQLQQS PLLLIQQNLS QRAQPQQQQQ QQLQQLSQPS HSEQQLHFQL LQKLQQHQQL PSPASSVLQS QQLQQQQQQT HQQHQQLQQS PLSQNQQPLG SNSFSTAALM QTQSLMQTQS FPMNQPQGLQ KPPMAVRARS SITDGEAPSC STSPSTNNCQ ISPQNFLNRN HLAPAMLMGD SAIEPASNLV QDLQNKSEIR VKNEFPSSRG LDQLKYKGAV TDQLEASSSG TSYCLDAGNI QQNFSVPTFG LDSDVQSHPR NSLPFASNID ALAPDTLLSR GYDSQKDLQN LLANYGGTTR DIETELSTAA ISSQSFAVPN IPFKPGCSND VAINDTGVLN NGLWTNQTNQ TQRMRTYTKV QKRGSVGRSI DVTRYKGYNE LRHDLARMFG IEGQLEDPQS SDWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSAEV QQMSLDGDLG SRAPATDVVL GARAVDCPTA IPQILSPLLQ LLPSDGSIPS SSTLDYIRES GQEAKDP // ID U5G8B0_POPTR Unreviewed; 475 AA. AC U5G8B0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP58506.1}; GN ORFNames=POPTR_0007s11170g {ECO:0000313|EMBL:ERP58506.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP58506.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP58506.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000343; ERP58506.1; -; Genomic_DNA. DR RefSeq; XP_006380709.1; XM_006380647.1. DR EnsemblPlants; POPTR_0007s11170.2; POPTR_0007s11170.2; POPTR_0007s11170. DR GeneID; 7483124; -. DR Gramene; POPTR_0007s11170.2; POPTR_0007s11170.2; POPTR_0007s11170. DR eggNOG; ENOG410IVH0; Eukaryota. DR eggNOG; ENOG41113FR; LUCA. DR Proteomes; UP000006729; Linkage group LGVII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 198 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 198 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 418 466 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 475 AA; 53668 MW; 9EC69481954A7758 CRC64; MSGRVKKEVE ETDLIKQQPF HEENRKYVED GDGKQKSPME TTAKRLKIKR RYSDSKLKFV ISGQAGKCIW QNRAPVERSN TVGETRSSAL IRAEEVQSNL EPAFPSFVKS LVRSHVASCF WMGLPGQFCR AHLPHVDATV TLQDECGKEF KMKYIAYKTG LSAGWRQFCV AHRLFEGDVL VFQLIESCTF KVYVIRANDL TEVDGALGLL NLDAQIKQNI ADNAERGNTA SKSSKRKRPR SLPLAIVQKK NKKSGQPRPS VLQAGQPAEQ SENDSEEVGS EVLEGFKLSL PAVQFKDIKS FEDFNILVDG LLLDSELSED IRNKYYKLCC SQNAFLHDNL IKGVNLKLIA GIISETVNIA DAMRACTLNT SRDEFATWDK ALKASELFGM NVGFLRSKLG LLLSLAFDSE GATKTRRYIE ARFKRVRTED EIRNLEAKLV ELKETYERYG ADVERLKSKA EGYELKFQEQ VLAPW // ID U5G8L0_POPTR Unreviewed; 332 AA. AC U5G8L0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP59760.1}; GN ORFNames=POPTR_0006s22460g {ECO:0000313|EMBL:ERP59760.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59760.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59760.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59760.1; -; Genomic_DNA. DR RefSeq; XP_006381963.1; XM_006381901.1. DR EnsemblPlants; POPTR_0006s22460.2; POPTR_0006s22460.2; POPTR_0006s22460. DR GeneID; 18100621; -. DR Gramene; POPTR_0006s22460.2; POPTR_0006s22460.2; POPTR_0006s22460. DR KEGG; pop:POPTR_0006s22460g; -. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 37706 MW; 71179C373161E5AB CRC64; MSINHFSTDL QETLSWWAQQ HQQQQPIMEP NPNASSSTPN EPPNISNPNS SWPPHHSWLN PYNTAQQPSS MFLPQNPTLN FNLNEEDDED QDHEQQQQDE TQQEQEVLVL DKEPMFEKPL TPSDVGKLNR LVIPKQHAEK YFPLSGDSVD KGLLLSFEDE SGRYWKFRYS YWNSSQSYVL TKGWSRYVKE KQLDAGDVVL FERHRTDGDR LFIGWRRRGE SGSNSGVMVQ GSGGGVWSRG ILYPSSSSGP HHLSSSNIQH DLGANVTAAN VPYQPYCLHA GTSCIFLCKV RDKHLPISLE KCGWIPIGHI FSADFSGVCI SVMRIQQFLK IC // ID U5GAN4_POPTR Unreviewed; 1129 AA. AC U5GAN4; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0006s14070g {ECO:0000313|EMBL:ERP59381.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59381.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59381.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59381.1; -; Genomic_DNA. DR RefSeq; XP_006381584.1; XM_006381522.1. DR EnsemblPlants; POPTR_0006s14070.3; POPTR_0006s14070.3; POPTR_0006s14070. DR GeneID; 18100300; -. DR Gramene; POPTR_0006s14070.3; POPTR_0006s14070.3; POPTR_0006s14070. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1002 1095 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1129 AA; 126635 MW; F18E9C11839A832B CRC64; MKVPSNGFLP NFAEGERKCI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADVETD EVYAQMTLQP YEKEALLASD MGLKQNRQPT EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QELVARDLHD NTWTFRHIYR GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RDEKSQLLLG IRRANRQQPA LSSSVISSDS MHIGILAAAA HAAANNSPFT IFYNPRASPS EFVIPFSKYN KALYTQVSLG MRFRMMFETE ESGVRRYMGT ITGISDMDPV RWKNSQWRNL QVGWDESTAG ERPSRVSIWE IEPVVTPFYI YPPPFFRPKF PKQPGMPDDD SDIENAFKRA MPWLGDEFGM KDPPSSIFPG LSLVQWMSMQ QNNQFPATQS GLFPSMVPSN ALHNNLSTDD PSKVLNFQAP GLSPPSVQLN KTNPQNQVGQ LPQPPMAWTQ QQQLQQLLQT PINQQLQQLL QTPINQQQPP YPHQQQQQPI SQQQQHQHWP QQQQQPQLQP PQIRQPPPQI QQHQQQQQIF QPPTLNDSVV APNQIPNQNL QQPVVYSQLQ QQQQLLASNT QSQSIPSANK SSYPLTSLPQ DSQLHQQMEQ QSNLSQRQQQ QTQLQQSPLL LIQQNLSQRA QPQQQQQQQL QQLSQPSHSE QQLHFQLLQK LQQHQQLPSP ASSVLQSQQL QQQQQQTHQQ HQQLQQSPLS QNQQPLGSNS FSTAALMQTQ SLMQTQSFPM NQPQGLQKPP MAVRARSSIT DGEAPSCSTS PSTNNCQISP QNFLNRNHLA PAMLMGDSAI EPASNLVQDL QNKSEIRVKN EFPSSRGLDQ LKYKGAVTDQ LEASSSGTSY CLDAGNIQQN FSVPTFGLDS DVQSHPRNSL PFASNIDALA PDTLLSRGYD SQKDLQNLLA NYGGTTRDIE TELSTAAISS QSFAVPNIPF KPGCSNDVAI NDTGVLNNGL WTNQTNQTQR MRTYTKVQKR GSVGRSIDVT RYKGYNELRH DLARMFGIEG QLEDPQSSDW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQQM SLDGDLGNVP VPNQACSGTN SGNVWRGQYD DNSAASFNR // ID U5GAU3_POPTR Unreviewed; 1132 AA. AC U5GAU3; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0006s14070g {ECO:0000313|EMBL:ERP59379.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59379.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59379.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). RN [2] {ECO:0000313|EMBL:ERP59379.1} RP NUCLEOTIDE SEQUENCE. RG US DOE Joint Genome Institute (JGI-PGF); RA Shu S., Lucas S., Jenkins J., Grimwood J., Muchero w., Hayes R., RA Goodstein D., Rokhsar D., Schmutz J., Tuskan G.; RL Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59378.1; -; Genomic_DNA. DR EMBL; CM000342; ERP59379.1; -; Genomic_DNA. DR RefSeq; XP_006381581.1; XM_006381519.1. DR RefSeq; XP_006381582.1; XM_006381520.1. DR EnsemblPlants; POPTR_0006s14070.2; POPTR_0006s14070.2; POPTR_0006s14070. DR EnsemblPlants; POPTR_0006s14070.5; POPTR_0006s14070.5; POPTR_0006s14070. DR GeneID; 18100300; -. DR Gramene; POPTR_0006s14070.2; POPTR_0006s14070.2; POPTR_0006s14070. DR Gramene; POPTR_0006s14070.5; POPTR_0006s14070.5; POPTR_0006s14070. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1005 1098 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1132 AA; 126949 MW; 5EDA01BD6388AD72 CRC64; MKVPSNGFLP NFAEGERKCI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADVETD EVYAQMTLQP VSKYEKEALL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPFS KYNKALYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDM DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYIYPPPFFR PKFPKQPGMP DDDSDIENAF KRAMPWLGDE FGMKDPPSSI FPGLSLVQWM SMQQNNQFPA TQSGLFPSMV PSNALHNNLS TDDPSKVLNF QAPGLSPPSV QLNKTNPQNQ VGQLPQPPMA WTQQQQLQQL LQTPINQQLQ QLLQTPINQQ QPPYPHQQQQ QPISQQQQHQ HWPQQQQQPQ LQPPQIRQPP PQIQQHQQQQ QIFQPPTLND SVVAPNQIPN QNLQQPVVYS QLQQQQQLLA SNTQSQSIPS ANKSSYPLTS LPQDSQLHQQ MEQQSNLSQR QQQQTQLQQS PLLLIQQNLS QRAQPQQQQQ QQLQQLSQPS HSEQQLHFQL LQKLQQHQQL PSPASSVLQS QQLQQQQQQT HQQHQQLQQS PLSQNQQPLG SNSFSTAALM QTQSLMQTQS FPMNQPQGLQ KPPMAVRARS SITDGEAPSC STSPSTNNCQ ISPQNFLNRN HLAPAMLMGD SAIEPASNLV QDLQNKSEIR VKNEFPSSRG LDQLKYKGAV TDQLEASSSG TSYCLDAGNI QQNFSVPTFG LDSDVQSHPR NSLPFASNID ALAPDTLLSR GYDSQKDLQN LLANYGGTTR DIETELSTAA ISSQSFAVPN IPFKPGCSND VAINDTGVLN NGLWTNQTNQ TQRMRTYTKV QKRGSVGRSI DVTRYKGYNE LRHDLARMFG IEGQLEDPQS SDWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSAEV QQMSLDGDLG NVPVPNQACS GTNSGNVWRG QYDDNSAASF NR // ID U5GBS2_POPTR Unreviewed; 353 AA. AC U5GBS2; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP59761.1}; GN ORFNames=POPTR_0006s22460g {ECO:0000313|EMBL:ERP59761.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59761.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59761.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59761.1; -; Genomic_DNA. DR RefSeq; XP_006381964.1; XM_006381902.1. DR EnsemblPlants; POPTR_0006s22460.3; POPTR_0006s22460.3; POPTR_0006s22460. DR GeneID; 18100621; -. DR Gramene; POPTR_0006s22460.3; POPTR_0006s22460.3; POPTR_0006s22460. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 39591 MW; 3C3305D1793C7095 CRC64; MSINHFSTDL QETLSWWAQQ HQQQQPIMEP NPNASSSTPN EPPNISNPNS SWPPHHSWLN PYNTAQQPSS MFLPQNPTLN FNLNEEDDED QDHEQQQQDE TQQEQEVLVL DKEPMFEKPL TPSDVGKLNR LVIPKQHAEK YFPLSGDSVD KGLLLSFEDE SGRYWKFRYS YWNSSQSYVL TKGWSRYVKE KQLDAGDVVL FERHRTDGDR LFIGWRRRGE SGSNSGVMVQ GSGGGVWSRG ILYPSSSSGP HHLSSSNIQH DLGANVTAAN VPYQPYCLHA GSIAQNQTTP LGNSKRLRLF GVNLECQLDG SEPSTPDGSS VSSLQGPGHP QFYSQSSYSS NSTHGQMVSH MTL // ID U5GD78_POPTR Unreviewed; 1073 AA. AC U5GD78; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0006s14070g {ECO:0000313|EMBL:ERP59377.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59377.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59377.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59377.1; -; Genomic_DNA. DR RefSeq; XP_006381580.1; XM_006381518.1. DR EnsemblPlants; POPTR_0006s14070.4; POPTR_0006s14070.4; POPTR_0006s14070. DR GeneID; 18100300; -. DR Gramene; POPTR_0006s14070.4; POPTR_0006s14070.4; POPTR_0006s14070. DR KEGG; pop:POPTR_0006s14070g; -. DR eggNOG; ENOG410IHYA; Eukaryota. DR eggNOG; ENOG410YDIT; LUCA. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1005 1073 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1073 AA; 120674 MW; 512BBF855CEC2FA1 CRC64; MKVPSNGFLP NFAEGERKCI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VTLHADVETD EVYAQMTLQP VSKYEKEALL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPFS KYNKALYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDM DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYIYPPPFFR PKFPKQPGMP DDDSDIENAF KRAMPWLGDE FGMKDPPSSI FPGLSLVQWM SMQQNNQFPA TQSGLFPSMV PSNALHNNLS TDDPSKVLNF QAPGLSPPSV QLNKTNPQNQ VGQLPQPPMA WTQQQQLQQL LQTPINQQLQ QLLQTPINQQ QPPYPHQQQQ QPISQQQQHQ HWPQQQQQPQ LQPPQIRQPP PQIQQHQQQQ QIFQPPTLND SVVAPNQIPN QNLQQPVVYS QLQQQQQLLA SNTQSQSIPS ANKSSYPLTS LPQDSQLHQQ MEQQSNLSQR QQQQTQLQQS PLLLIQQNLS QRAQPQQQQQ QQLQQLSQPS HSEQQLHFQL LQKLQQHQQL PSPASSVLQS QQLQQQQQQT HQQHQQLQQS PLSQNQQPLG SNSFSTAALM QTQSLMQTQS FPMNQPQGLQ KPPMAVRARS SITDGEAPSC STSPSTNNCQ ISPQNFLNRN HLAPAMLMGD SAIEPASNLV QDLQNKSEIR VKNEFPSSRG LDQLKYKGAV TDQLEASSSG TSYCLDAGNI QQNFSVPTFG LDSDVQSHPR NSLPFASNID ALAPDTLLSR GYDSQKDLQN LLANYGGTTR DIETELSTAA ISSQSFAVPN IPFKPGCSND VAINDTGVLN NGLWTNQTNQ TQRMRTYTKV QKRGSVGRSI DVTRYKGYNE LRHDLARMFG IEGQLEDPQS SDWKLVYVDH ENDILLVGDD PWE // ID U5GEA4_POPTR Unreviewed; 363 AA. AC U5GEA4; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP59762.1}; GN ORFNames=POPTR_0006s22460g {ECO:0000313|EMBL:ERP59762.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP59762.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP59762.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000342; ERP59762.1; -; Genomic_DNA. DR RefSeq; XP_006381965.1; XM_006381903.1. DR STRING; 3694.POPTR_0006s22460.1; -. DR EnsemblPlants; POPTR_0006s22460.1; POPTR_0006s22460.1; POPTR_0006s22460. DR GeneID; 18100621; -. DR Gramene; POPTR_0006s22460.1; POPTR_0006s22460.1; POPTR_0006s22460. DR eggNOG; ENOG410IXTY; Eukaryota. DR eggNOG; ENOG410YIJZ; LUCA. DR OMA; NAVMEND; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000006729; Linkage group LGVI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 363 AA; 40818 MW; 525CEE8A51211DF3 CRC64; MSINHFSTDL QETLSWWAQQ HQQQQPIMEP NPNASSSTPN EPPNISNPNS SWPPHHSWLN PYNTAQQPSS MFLPQNPTLN FNLNEEDDED QDHEQQQQDE TQQEQEVLVL DKEPMFEKPL TPSDVGKLNR LVIPKQHAEK YFPLSGDSVD KGLLLSFEDE SGRYWKFRYS YWNSSQSYVL TKGWSRYVKE KQLDAGDVVL FERHRTDGDR LFIGWRRRGE SGSNSGVMVQ GSGGGVWSRG ILYPSSSSGP HHLSSSNIQH DLGANVTAAN VPYQPYCLHA GSIAQNQTTP LGNSKRLRLF GVNLECQLDG SEPSTPDGSS VSSLQGPGHP QFYSQSSYSS NSTHGQMDIP FSGDVHRMRN RRG // ID U5GHK9_POPTR Unreviewed; 660 AA. AC U5GHK9; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s00890g {ECO:0000313|EMBL:ERP62985.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62985.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62985.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP62985.1; -; Genomic_DNA. DR RefSeq; XP_006385188.1; XM_006385126.1. DR STRING; 3694.POPTR_0003s00890.1; -. DR EnsemblPlants; POPTR_0003s00890.1; POPTR_0003s00890.1; POPTR_0003s00890. DR GeneID; 18096589; -. DR Gramene; POPTR_0003s00890.1; POPTR_0003s00890.1; POPTR_0003s00890. DR KEGG; pop:POPTR_0003s00890g; -. DR eggNOG; ENOG410IHVY; Eukaryota. DR eggNOG; ENOG410Y8ZK; LUCA. DR KO; K14486; -. DR OMA; RTQELYH; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 534 627 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 660 AA; 73556 MW; CE46C75D2D5E3C4C CRC64; MNHTSGGNPH PGGCNDALYK ELWHACAGPL VTLPCEGERV YYFPQGHMEQ LEASMHQGME QQMPSFNLPS KILCKVVNVQ RRAEPETDEV YAQITLLPEP DQSEVTSPDP PLPEPERCTV HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHG NEWHFRHIFR GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRLMRQQTN MPSSVISSQS MHLGVLATAS HAIVTGTLFS VFYKPRTSRS EFIVNLNKYI EAQNHKLSVG MRFKMRFEGE EVPERRFSGT IVGVGDNISS GWADSEWRSL KVHWDEPSSI LRPERVSPWD LEPLVATTPS NSQPMQRNKR PRPSVLPSPT ANLSALGMWK PSVESSAFSY GESQRGRDPY PSPNFSTTAK ANSLSFCGNS QVTSVSPNSM YRPNQVESVT DSFAPVVNKD LGERRQGTGI GYRLFGIQLI DNFNAEGTSP VVTVSGTVGN DRPVVSLEAE SDQHSEPEKS CLRSHQELQS RQIRSCTKVH MQGVAVGRAV DLTQFEHYED LLRKLEEMFD IEGELSGSTK KWQVVYTDNE DDMMKVGDDP WHEFCSMVKK IFIYASEEVK RLSPKIKLSG DEEIKGDSAN ANADASVNTE DRSSVVGPGC // ID U5GHQ5_POPTR Unreviewed; 305 AA. AC U5GHQ5; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP61831.1}; DE Flags: Fragment; GN ORFNames=POPTR_0004s04560g {ECO:0000313|EMBL:ERP61831.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP61831.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP61831.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP61831.1; -; Genomic_DNA. DR RefSeq; XP_006384034.1; XM_006383972.1. DR STRING; 3694.POPTR_0004s04560.1; -. DR EnsemblPlants; POPTR_0004s04560.1; POPTR_0004s04560.1; POPTR_0004s04560. DR GeneID; 18097478; -. DR Gramene; POPTR_0004s04560.1; POPTR_0004s04560.1; POPTR_0004s04560. DR KEGG; pop:POPTR_0004s04560g; -. DR eggNOG; ENOG410JDJ2; Eukaryota. DR eggNOG; ENOG41116MG; LUCA. DR OMA; QIMDARR; -. DR OrthoDB; EOG09361BNR; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 160 247 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT NON_TER 305 305 {ECO:0000313|EMBL:ERP61831.1}. SQ SEQUENCE 305 AA; 34726 MW; E74C7B0FAE39F3C7 CRC64; MGCPQNSQFS SMYGPLSYHS TVPSNSVTQS NCVPPQYYMP APCESRQNPY THSLEKPSHH TPSADPFRLA MAGQNAFEMQ RSCILQPNAF QLEQERRALD AYKTKVARCK RKLARQRSLS KTSIGASSTQ IMDARRLALH GASTCGQRSR SNTSKDLYEF LTPDNKREVE ENLPVLNDKE GILLFLRDVY SNQEWALKFK FWSNNKSRMY VLENTGEFVK QNGLETGDFL TLYEDESKNL PINHNSNCLY TPHMYQARDE EKSSLALLIE QLDQKEQEEA NSLVAVPPDS AYTNNELTNN PFNNS // ID U5GIZ3_POPTR Unreviewed; 381 AA. AC U5GIZ3; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62271.1}; GN ORFNames=POPTR_0004s15400g {ECO:0000313|EMBL:ERP62271.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62271.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62271.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62271.1; -; Genomic_DNA. DR RefSeq; XP_006384474.1; XM_006384412.1. DR STRING; 3694.POPTR_0004s15400.1; -. DR EnsemblPlants; POPTR_0004s15400.1; POPTR_0004s15400.1; POPTR_0004s15400. DR GeneID; 18097848; -. DR Gramene; POPTR_0004s15400.1; POPTR_0004s15400.1; POPTR_0004s15400. DR KEGG; pop:POPTR_0004s15400g; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR OMA; DGRSKFS; -. DR OrthoDB; EOG09360FU4; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 277 372 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 277 372 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 381 AA; 43427 MW; 75DDF581A4E12FEB CRC64; MPRPFFQKLI LPGTIREKRL RIPDNFVKKF GHDLLGFARL IVPGGHVSRI GLIKADEKLW FHDGWQQFVE RFAIHIGYFL IFQYEGNAIF NVHIFNLPTS EINYHSNSLS GKIYLAFEEL EDDDSAASSG IPTTQLIVNK SYNPPALQNL LSGSKLNNCL NWGGEENMHL TKSANVSQVA NESARNVFAQ YNEHKNSQEE VKLYSPDGET PKLKKRGRKR LKVDPNEQQL SSPNEDDGEM SFRFYESASA RKRTVTAEER ERAMNAAKAY APDNPYCRVV LRPSYLYRGC IMYLPSGFAE KNLNGLSGFM KLQLPDGKQW PVRCLYRGGR AKFSQGWYEF TLENNLGEGD VCVFELLKSR DVVLKVTVFR VLEDGGLMNH P // ID U5GJI7_POPTR Unreviewed; 671 AA. AC U5GJI7; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s16210g {ECO:0000313|EMBL:ERP63680.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP63680.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP63680.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP63680.1; -; Genomic_DNA. DR RefSeq; XP_006385883.1; XM_006385821.1. DR EnsemblPlants; POPTR_0003s16210.4; POPTR_0003s16210.4; POPTR_0003s16210. DR GeneID; 7496534; -. DR Gramene; POPTR_0003s16210.4; POPTR_0003s16210.4; POPTR_0003s16210. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 671 AA; 76217 MW; D40149B4C4E050A1 CRC64; MELRAGAGVF RWLVKVPMII HNDFLSFSFD FFRFYWIIAV VVLARVGSED ALYKELWHAC AGPLVTVPRQ GELVYYFPQG HIEQVEASTN QVADDQQMPA YNLSPKILCR VVNVQLKAEL DTDEVFAQVI LLPETQQDVE LVEEEDLPPL PARPRVHSFC KMLTASDTST HGGFSVLKRH ADECLPPLDM SLQPPVQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSL FVSAKKLVAG DAFIFLRGET EELRVGVRRA LRQPSKIPSS LISSHSMHIG ILATAWHAVS TGSMFTVYYK PRTSPAEFII PVDKYMESVK INYAIGMRFK MRFEADDAPE QRFSGTVIGV EEADPKKWPR SNWRCLKVHW DETSPVHRPD RVSPWKVEPA LAPSMDPVSG CRLKRHRPNT VTSSADSSAL TKKDNGPSRH MQHQEILTLR NTPTGKNYSD NNHNPPWVLS QGTGTLLKSY ESSRPFFGLF SDDVDQPSKL TSDEKSMFNW HSAPMMYTGH PFNMLASSME VQVAKDKDTQ QQHGSRFLPF PYADSSPHPS RSKPQHLPFQ QCNERTAKDD NYKLFGVSLF RNSKALEPAT IHRHSADKPQ HQINVASDHL QLLGSDRYLE QLKHPKHARC EEQENIFQAS SLYSKDVQGK PEGGSARRCV KVVTYFNAVI E // ID U5GJL0_POPTR Unreviewed; 799 AA. AC U5GJL0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s16210g {ECO:0000313|EMBL:ERP63678.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP63678.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP63678.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP63678.1; -; Genomic_DNA. DR RefSeq; XP_006385881.1; XM_006385819.1. DR EnsemblPlants; POPTR_0003s16210.6; POPTR_0003s16210.6; POPTR_0003s16210. DR GeneID; 7496534; -. DR Gramene; POPTR_0003s16210.6; POPTR_0003s16210.6; POPTR_0003s16210. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 657 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 799 AA; 90957 MW; EE404D1543B51BFA CRC64; MELRAGAGVF RWLVKVPMII HNDFLSFSFD FFRFYWIIAV VVLARVGSED ALYKELWHAC AGPLVTVPRQ GELVYYFPQG HIEQVEASTN QVADDQQMPA YNLSPKILCR VVNVQLKAEL DTDEVFAQVI LLPETQQDVE LVEEEDLPPL PARPRVHSFC KMLTASDTST HGGFSVLKRH ADECLPPLDM SLQPPVQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSL FVSAKKLVAG DAFIFLRGET EELRVGVRRA LRQPSKIPSS LISSHSMHIG ILATAWHAVS TGSMFTVYYK PRTSPAEFII PVDKYMESVK INYAIGMRFK MRFEADDAPE QRFSGTVIGV EEADPKKWPR SNWRCLKVHW DETSPVHRPD RVSPWKVEPA LAPSMDPVSG CRLKRHRPNT VTSSADSSAL TKKDNGPSRH MQHQEILTLR NTPTGKNYSD NNHNPPWVLS QGTGTLLKSY ESSRPFFGLF SDDVDQPSKL TSDEKSMFNW HSAPMMYTGH PFNMLASSME VQVAKDKDTQ QQHGSRFLPF PYADSSPHPS RSKPQHLPFQ QCNERTAKDD NYKLFGVSLF RNSKALEPAT IHRHSADKPQ HQINVASDHL QLLGSDRYLE QLKHPKHARC EEQENIFQAS SLYSKDVQGK PEGGSARRCV KVHKQGTAVG RSLDLAKFNG YNELTAELDQ IFEFNGELVA PNKDWLIVFT DDEDDMMLVG DDPWQEFCSM VRRIFIYTKE EINRMEPRSL NREAEGNSRS TDQMVDLENR ISKHLPAVSP SECQGLCYMT GSKVMRPER // ID U5GKC0_POPTR Unreviewed; 110 AA. AC U5GKC0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62796.1}; GN ORFNames=POPTR_0004s22930g {ECO:0000313|EMBL:ERP62796.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62796.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62796.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62796.1; -; Genomic_DNA. DR RefSeq; XP_006384999.1; XM_006384937.1. DR EnsemblPlants; POPTR_0004s22930.1; POPTR_0004s22930.1; POPTR_0004s22930. DR GeneID; 18098284; -. DR Gramene; POPTR_0004s22930.1; POPTR_0004s22930.1; POPTR_0004s22930. DR KEGG; pop:POPTR_0004s22930g; -. DR OMA; PKDHEAN; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12572 MW; 75424FAE12E438F8 CRC64; MENFTKKLDS TDVQRRLTLP ENCLKDFPKD HEANLKFKDE EGQVWTFRCR VSPGRSSKPA LSGDWFPFVR KKGLSTGDVI VIISDKEKDV AAGEHFKIKI KKSASTHHQN // ID U5GKR7_POPTR Unreviewed; 104 AA. AC U5GKR7; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62799.1}; GN ORFNames=POPTR_0004s22960g {ECO:0000313|EMBL:ERP62799.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62799.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62799.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62799.1; -; Genomic_DNA. DR RefSeq; XP_006385002.1; XM_006384940.1. DR EnsemblPlants; POPTR_0004s22960.1; POPTR_0004s22960.1; POPTR_0004s22960. DR GeneID; 18098287; -. DR Gramene; POPTR_0004s22960.1; POPTR_0004s22960.1; POPTR_0004s22960. DR KEGG; pop:POPTR_0004s22960g; -. DR OMA; ENKMEFE; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 89 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 89 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 104 AA; 11844 MW; 18D543A44F01E4E3 CRC64; MTIPMDSLSA FQIPEGKYSK EVVAVDTDGH RWSFRCSMRR KDPHRKPVLS SGWIKFVKNR GLKEGDEVIF SVAHNDGAEG PQFGIEARRK LTKLFGQDIW VNPL // ID U5GKT1_POPTR Unreviewed; 110 AA. AC U5GKT1; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62971.1}; GN ORFNames=POPTR_0003s00440g {ECO:0000313|EMBL:ERP62971.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62971.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62971.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP62971.1; -; Genomic_DNA. DR RefSeq; XP_006385174.1; XM_006385112.1. DR EnsemblPlants; POPTR_0003s00440.1; POPTR_0003s00440.1; POPTR_0003s00440. DR GeneID; 18096601; -. DR Gramene; POPTR_0003s00440.1; POPTR_0003s00440.1; POPTR_0003s00440. DR KEGG; pop:POPTR_0003s00440g; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 110 AA; 12599 MW; 88345D3F48F201EE CRC64; MEKSFTKKLN DIDIERRLLL SENCIKDFPR GHEAYLKFKD EDGQVWTFRC RVPPGGGSKP ALSGDWFLFV RSKHLKVGDV IVIALDREKD QAAGEQFTIK VKKTTSTTRN // ID U5GKX0_POPTR Unreviewed; 108 AA. AC U5GKX0; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP63006.1}; GN ORFNames=POPTR_0003s01200g {ECO:0000313|EMBL:ERP63006.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP63006.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP63006.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP63006.1; -; Genomic_DNA. DR RefSeq; XP_006385209.1; XM_006385147.1. DR EnsemblPlants; POPTR_0003s01200.1; POPTR_0003s01200.1; POPTR_0003s01200. DR GeneID; 18096619; -. DR Gramene; POPTR_0003s01200.1; POPTR_0003s01200.1; POPTR_0003s01200. DR KEGG; pop:POPTR_0003s01200g; -. DR OMA; ATDHRCF; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 104 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 108 AA; 12624 MW; 5CAA641BC9EEB82F CRC64; MQIFSKELTD TDVRFRLSFP THCLQHLDFA GNNLVDLHVK DSYGELRVIR CLKRDGDYDK PVLSKGWRKF VAYYGLRVGD KVVLHREDDH NLGSQFRIEA KRSIMLAN // ID U5GLB7_POPTR Unreviewed; 183 AA. AC U5GLB7; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP64313.1}; GN ORFNames=POPTR_0002s13140g {ECO:0000313|EMBL:ERP64313.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP64313.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP64313.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; ERP64313.1; -; Genomic_DNA. DR RefSeq; XP_006386516.1; XM_006386454.1. DR EnsemblPlants; POPTR_0002s13140.1; POPTR_0002s13140.1; POPTR_0002s13140. DR GeneID; 18096308; -. DR Gramene; POPTR_0002s13140.1; POPTR_0002s13140.1; POPTR_0002s13140. DR KEGG; pop:POPTR_0002s13140g; -. DR eggNOG; ENOG410J25B; Eukaryota. DR eggNOG; ENOG410YSHE; LUCA. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 100 183 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 100 183 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 183 AA; 21441 MW; D9F2B954A70F6D24 CRC64; MMLNHSWPYC HSVFKLQPIP EKFSNHLKKK LPENVILKGP SGGTWQVELT TDDDTMFFKN GWEEFVKDHF LEKDLLIFKY NRESCFEVLI FDGQSLCEKV IPSGWANRHF RTLEKKDVIL RMKENTWNTK FLYCKSKNSG GLSSGWRNFA LDNKLQEFDV CLFEPSSAVN NSIVFDVSIF RVL // ID U5GLI5_POPTR Unreviewed; 193 AA. AC U5GLI5; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62217.1}; GN ORFNames=POPTR_0004s14910g {ECO:0000313|EMBL:ERP62217.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62217.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62217.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62217.1; -; Genomic_DNA. DR RefSeq; XP_006384420.1; XM_006384358.1. DR EnsemblPlants; POPTR_0004s14910.1; POPTR_0004s14910.1; POPTR_0004s14910. DR GeneID; 18097796; -. DR Gramene; POPTR_0004s14910.1; POPTR_0004s14910.1; POPTR_0004s14910. DR KEGG; pop:POPTR_0004s14910g; -. DR OMA; RVENTIE; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 193 AA; 21847 MW; 014DF3D332F8C4BF CRC64; MERAEEIQAY LGNKFLTCVK PMLPSHVSGG FWLGLPRKFC HLHLPNHDAI IILVDETEKE YQVVHIAERT GLSGGWRGFS IEHRLLEQDT LVFQLIEPDK LKIYIVRANR LSETDGALGL MHLSHAKRTD FGKQRASRSA RMLPLSLKML AKIDICLSLG CLQFCPLNHS NKGQIDGSSA VVFSNLIYQR FFS // ID U5GLM2_POPTR Unreviewed; 599 AA. AC U5GLM2; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0002s17350g {ECO:0000313|EMBL:ERP64428.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP64428.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP64428.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; ERP64428.1; -; Genomic_DNA. DR RefSeq; XP_006386631.1; XM_006386569.1. DR EnsemblPlants; POPTR_0002s17350.2; POPTR_0002s17350.2; POPTR_0002s17350. DR GeneID; 18096378; -. DR Gramene; POPTR_0002s17350.2; POPTR_0002s17350.2; POPTR_0002s17350. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 599 AA; 66769 MW; 3355BF5D87C7C85E CRC64; MAHAERGCDD LYTELWKACA GPLVDVPKDG ERVFYFPQGH MEQLEASTNQ ELNQQIPRFN LPPKILCRVV NIQLLAEQDT DEVYAQITLH PEVDQTEPTS PDPCPPEPAK PTIHSFCKIL TASDTSTHGG FSVLRKHATE CLPPLDMSQA TPTQELAARD LHGFEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGHNREL RVGVRRLARQ QSSIPSSVIS SQSMHLGVLA TASHAVLTQT LFVVYYKPRT NQYIIGLNKY LEAVKNGFSV GMRFKMRFEG EDSPERRFTG TIVGVGDISP EWSGSIWRSL KIQWDEPATI QRPERVSPWD IEPFAAPASP NLTQQVMKTK RPRPTDIPTS AASSFWYHGS TQSHELAQLG SSNEVQSSES HVWSMRQKEI DTSLLNNSSS SNTRARPEGI WPSSPNMNVS LNFFPDSVGD NNFATTRSII SGFSSPISSR QSNCLINEQV EKGRKYENSV GCRLFGIDLT SNSGSSAPPE KEPGYPIVDS NGTKGLVPAA SEAERAQAMD VSMYSKEQKQ VLSEAMVKES QSKQGSTTSM RTRTKVKFEV LPSVVFPFLS EPSDEQDFL // ID U5GLP2_POPTR Unreviewed; 340 AA. AC U5GLP2; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP62272.1}; GN ORFNames=POPTR_0004s15410g {ECO:0000313|EMBL:ERP62272.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP62272.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP62272.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000340; ERP62272.1; -; Genomic_DNA. DR RefSeq; XP_006384475.1; XM_006384413.1. DR STRING; 3694.POPTR_0004s15410.1; -. DR EnsemblPlants; POPTR_0004s15410.1; POPTR_0004s15410.1; POPTR_0004s15410. DR GeneID; 18097849; -. DR Gramene; POPTR_0004s15410.1; POPTR_0004s15410.1; POPTR_0004s15410. DR KEGG; pop:POPTR_0004s15410g; -. DR eggNOG; ENOG410J0VW; Eukaryota. DR eggNOG; ENOG410YZ3E; LUCA. DR OMA; TEFVWEN; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000006729; Linkage group LGIV. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 234 329 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 234 329 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38552 MW; 7E8F389E55FAA215 CRC64; MSQAAVKPDG SDSPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SVATLTVPCG RICLVELQKV NGKLWFHKGW HEFVECYSIR VGYFLVFIYE GKSNFNVHMF DLTVSEIKNP CNSLSQLQES SHDNPCLLPN EKDDGLEKLT STEDGAGSVI PGITRKTRGR KRMSENIEDV DKHASPGIQN VKLKSTHVRN TSETLTRRRR AVTPEEKERT IRAAHMFRSD NPFFRVILRP SYVYRGFLLH IPSSFARTFL NTVTGFVTLQ VSDGKQWPVR CSFKDGKAKL GQGWTEFVWE NNLEEGDVCI FELIHAKEIV LKVAVFRVLE DAAPTGQLSN // ID U5GMS8_POPTR Unreviewed; 725 AA. AC U5GMS8; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s16210g {ECO:0000313|EMBL:ERP63676.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP63676.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP63676.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP63676.1; -; Genomic_DNA. DR RefSeq; XP_006385879.1; XM_006385817.1. DR EnsemblPlants; POPTR_0003s16210.5; POPTR_0003s16210.5; POPTR_0003s16210. DR GeneID; 7496534; -. DR Gramene; POPTR_0003s16210.5; POPTR_0003s16210.5; POPTR_0003s16210. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 657 725 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 725 AA; 82335 MW; BEC27B49CD9122E7 CRC64; MELRAGAGVF RWLVKVPMII HNDFLSFSFD FFRFYWIIAV VVLARVGSED ALYKELWHAC AGPLVTVPRQ GELVYYFPQG HIEQVEASTN QVADDQQMPA YNLSPKILCR VVNVQLKAEL DTDEVFAQVI LLPETQQDVE LVEEEDLPPL PARPRVHSFC KMLTASDTST HGGFSVLKRH ADECLPPLDM SLQPPVQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSL FVSAKKLVAG DAFIFLRGET EELRVGVRRA LRQPSKIPSS LISSHSMHIG ILATAWHAVS TGSMFTVYYK PRTSPAEFII PVDKYMESVK INYAIGMRFK MRFEADDAPE QRFSGTVIGV EEADPKKWPR SNWRCLKVHW DETSPVHRPD RVSPWKVEPA LAPSMDPVSG CRLKRHRPNT VTSSADSSAL TKKDNGPSRH MQHQEILTLR NTPTGKNYSD NNHNPPWVLS QGTGTLLKSY ESSRPFFGLF SDDVDQPSKL TSDEKSMFNW HSAPMMYTGH PFNMLASSME VQVAKDKDTQ QQHGSRFLPF PYADSSPHPS RSKPQHLPFQ QCNERTAKDD NYKLFGVSLF RNSKALEPAT IHRHSADKPQ HQINVASDHL QLLGSDRYLE QLKHPKHARC EEQENIFQAS SLYSKDVQGK PEGGSARRCV KVHKQGTAVG RSLDLAKFNG YNELTAELDQ IFEFNGELVA PNKDWLIVFT DDEDDMMLVG DDPWQ // ID U5GNB8_POPTR Unreviewed; 804 AA. AC U5GNB8; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s16210g {ECO:0000313|EMBL:ERP63679.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP63679.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP63679.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP63679.1; -; Genomic_DNA. DR RefSeq; XP_006385882.1; XM_006385820.1. DR EnsemblPlants; POPTR_0003s16210.1; POPTR_0003s16210.1; POPTR_0003s16210. DR GeneID; 7496534; -. DR Gramene; POPTR_0003s16210.1; POPTR_0003s16210.1; POPTR_0003s16210. DR OMA; HRSEERE; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 657 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 804 AA; 91440 MW; 8DABA604841BFEF7 CRC64; MELRAGAGVF RWLVKVPMII HNDFLSFSFD FFRFYWIIAV VVLARVGSED ALYKELWHAC AGPLVTVPRQ GELVYYFPQG HIEQVEASTN QVADDQQMPA YNLSPKILCR VVNVQLKAEL DTDEVFAQVI LLPETQQDVE LVEEEDLPPL PARPRVHSFC KMLTASDTST HGGFSVLKRH ADECLPPLDM SLQPPVQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSL FVSAKKLVAG DAFIFLRGET EELRVGVRRA LRQPSKIPSS LISSHSMHIG ILATAWHAVS TGSMFTVYYK PRTSPAEFII PVDKYMESVK INYAIGMRFK MRFEADDAPE QRFSGTVIGV EEADPKKWPR SNWRCLKVHW DETSPVHRPD RVSPWKVEPA LAPSMDPVSG CRLKRHRPNT VTSSADSSAL TKKDNGPSRH MQHQEILTLR NTPTGKNYSD NNHNPPWVLS QGTGTLLKSY ESSRPFFGLF SDDVDQPSKL TSDEKSMFNW HSAPMMYTGH PFNMLASSME VQVAKDKDTQ QQHGSRFLPF PYADSSPHPS RSKPQHLPFQ QCNERTAKDD NYKLFGVSLF RNSKALEPAT IHRHSADKPQ HQINVASDHL QLLGSDRYLE QLKHPKHARC EEQENIFQAS SLYSKDVQGK PEGGSARRCV KVHKQGTAVG RSLDLAKFNG YNELTAELDQ IFEFNGELVA PNKDWLIVFT DDEDDMMLVG DDPWQEFCSM VRRIFIYTKE EINRMEPRSL NREAEGNSRS TDQMVDLENR ISKHLPAVSP SECQGLCYMT GSKVRDASTW IPKP // ID U5GP47_POPTR Unreviewed; 610 AA. AC U5GP47; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0001s10900g {ECO:0000313|EMBL:ERP65358.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP65358.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP65358.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000337; ERP65358.1; -; Genomic_DNA. DR RefSeq; XP_006368789.1; XM_006368727.1. DR STRING; 3694.POPTR_0001s10900.1; -. DR EnsemblPlants; POPTR_0001s10900.1; POPTR_0001s10900.1; POPTR_0001s10900. DR GeneID; 7467068; -. DR Gramene; POPTR_0001s10900.1; POPTR_0001s10900.1; POPTR_0001s10900. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR OMA; EAMNNKF; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 135 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 498 579 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 135 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 610 AA; 67586 MW; 7568FC0E3E99BE6E CRC64; MMAMNRGIGG GGGGGSLSQG NSEGCGGDDL YTELWKACAG PLVDVPKRGE RVFYFPQGHM EQLEASTNQE LNQRVPLFNL PSKILCRVIH TQLLAEQDTD EVYAQITLIP ESDQIEPTSP DSSSSEPPRP TVHSFCKVLT ASDTSTHGGF SVLRKHATEC LPPLDMTQPT PTQELVAKDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDSFV FLRGENGELR VGVRRVACQQ SSMPSSVISS QSMHLGVLAT ASHAVSTLTL FVVYYKPRTS QFIISLNKYL EAVSNKFVVG MRFKMRFEGE DSPDRRFSGT IVGVEDFSPH WNDSKWRSLK VQWDEPAPIP RPDRVSPWEI EPCVASVPTN LSQPVTQKNK RPRPPFEIPA LGYSTPLSSK SKNDAILDPS DKGRKSEVPT SYRLFGIDLV NHSSSSTPIE VPAQLMSICS GATEGHVLGT LSAVDSDQKS EVSKEQKPEQ LQKSPKEIQS KQSSTSTRSR TKVQMQGIAV GRAVDLTMLK GYSQLIDELE QLFDIKGQLH PRDKWEIVYT DDEGDMMLVG DDPWPEFCNM VRRIYICSSQ DVKRMGPGSK LPKLPIKGEG TVLSSDSAEN // ID U5GR04_POPTR Unreviewed; 768 AA. AC U5GR04; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0003s16210g {ECO:0000313|EMBL:ERP63677.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP63677.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP63677.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000339; ERP63677.1; -; Genomic_DNA. DR RefSeq; XP_006385880.1; XM_006385818.1. DR EnsemblPlants; POPTR_0003s16210.3; POPTR_0003s16210.3; POPTR_0003s16210. DR GeneID; 7496534; -. DR Gramene; POPTR_0003s16210.3; POPTR_0003s16210.3; POPTR_0003s16210. DR Proteomes; UP000006729; Linkage group LGIII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 626 719 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 768 AA; 87594 MW; 732DA83E756DA5BA CRC64; MELRAGAGVF RWLVKVPMII HNDFLSFSFD FFRFYWIIAV VVLARVGSED ALYKELWHAC AGPLVTVPRQ GELVYYFPQG HIEQVEASTN QVADDQQMPA YNLSPKILCR VVNVQLKAEL DTDEVFAQVI LLPETQQDVE LVEEEDLPPL PARPRVHSFC KMLTASDTST HGGFSVLKRH ADECLPPLDM SLQPPVQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSL FVSAKKLVAG DAFIFLRGET EELRVGVRRA LRQPSKIPSS LISSHSMHIG ILATAWHAVS TGSMFTVYYK PRTSPAEFII PVDKYMESVK INYAIGMRFK MRFEADDAPE QRFSGTVIGV EEADPKKWPR SNWRCLKVHW DETSPVHRPD RVSPWKVEPA LAPSMDPVSG CRLKRHRPNT VTSSADSSAL TKKDNGPSRH MQHQEILTLR NTPTGKNYSD NNHNPPWVLS QDEKSMFNWH SAPMMYTGHP FNMLASSMEV QVAKDKDTQQ QHGSRFLPFP YADSSPHPSR SKPQHLPFQQ CNERTAKDDN YKLFGVSLFR NSKALEPATI HRHSADKPQH QINVASDHLQ LLGSDRYLEQ LKHPKHARCE EQENIFQASS LYSKDVQGKP EGGSARRCVK VHKQGTAVGR SLDLAKFNGY NELTAELDQI FEFNGELVAP NKDWLIVFTD DEDDMMLVGD DPWQEFCSMV RRIFIYTKEE INRMEPRSLN REAEGNSRST DQMVDLENRI SKHLPAVSPS ECQGLCYMTG SKVMRPER // ID U5GT51_POPTR Unreviewed; 686 AA. AC U5GT51; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0002s17350g {ECO:0000313|EMBL:ERP64427.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP64427.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP64427.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; ERP64427.1; -; Genomic_DNA. DR RefSeq; XP_006386630.1; XM_006386568.1. DR STRING; 3694.POPTR_0002s17350.1; -. DR EnsemblPlants; POPTR_0002s17350.1; POPTR_0002s17350.1; POPTR_0002s17350. DR GeneID; 18096378; -. DR Gramene; POPTR_0002s17350.1; POPTR_0002s17350.1; POPTR_0002s17350. DR KEGG; pop:POPTR_0002s17350g; -. DR eggNOG; ENOG410IIQI; Eukaryota. DR eggNOG; ENOG410YECH; LUCA. DR KO; K14486; -. DR OMA; ISVNKYM; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 571 652 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 686 AA; 76561 MW; DC117E5555815C15 CRC64; MAHAERGCDD LYTELWKACA GPLVDVPKDG ERVFYFPQGH MEQLEASTNQ ELNQQIPRFN LPPKILCRVV NIQLLAEQDT DEVYAQITLH PEVDQTEPTS PDPCPPEPAK PTIHSFCKIL TASDTSTHGG FSVLRKHATE CLPPLDMSQA TPTQELAARD LHGFEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGHNREL RVGVRRLARQ QSSIPSSVIS SQSMHLGVLA TASHAVLTQT LFVVYYKPRT NQYIIGLNKY LEAVKNGFSV GMRFKMRFEG EDSPERRFTG TIVGVGDISP EWSGSIWRSL KIQWDEPATI QRPERVSPWD IEPFAAPASP NLTQQVMKTK RPRPTDIPTS AASSFWYHGS TQSHELAQLG SSNEVQSSES HVWSMRQKEI DTSLLNNSSS SNTRARPEGI WPSSPNMNVS LNFFPDSVGD NNFATTRSII SGFSSPISSR QSNCLINEQV EKGRKYENSV GCRLFGIDLT SNSGSSAPPE KEPGYPIVDS NGTKGLVPAA SEAERAQAMD VSMYSKEQKQ VLSEAMVKES QSKQGSTTSM RTRTKVQMQG IAVGRALDLT VLKGYRDLIY ELEKMFEIEG ELSTPNKWAV VFTDDEGDMM LVGDDPWPEF CKMVKKIFIY SSEEVKKTGT RCKLPASSFE GEETVVSMDS DHRSDA // ID U5GT98_POPTR Unreviewed; 413 AA. AC U5GT98; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP64467.1}; GN ORFNames=POPTR_0002s18260g {ECO:0000313|EMBL:ERP64467.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP64467.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP64467.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000338; ERP64467.1; -; Genomic_DNA. DR RefSeq; XP_006386670.1; XM_006386608.1. DR EnsemblPlants; POPTR_0002s18260.1; POPTR_0002s18260.1; POPTR_0002s18260. DR GeneID; 18096404; -. DR Gramene; POPTR_0002s18260.1; POPTR_0002s18260.1; POPTR_0002s18260. DR KEGG; pop:POPTR_0002s18260g; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; SITMTHG; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006729; Linkage group LGII. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 115 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 413 AA; 47056 MW; 18C97CD5664305E9 CRC64; MNFVEGERGD FDKEEQGEEK QEGEEAVKTS KLLFSSPCTS SSSTKYTNFL PEHHNMWPGS FDQSQQDSKT QEPSLNFDKK LELMELSLGN NNETERTSAD AVVGARESIE REHMFDKVVT PSDVGKLNRL VIPKQHAERY FPLDSSSNEK GLILNFEDRN GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDIVSF QRGVGESGKH RLFIDWRRRP NAPDPTTFSH LELQNQQHYP QSVRWGRLYS IPQSNLSMQQ PQLRHLNYSI HPYQQQQYQN RNHQNHYHQP STISYGTSAQ YYLRPPETLQ IGAMHQQAGG SHVPLVIDSV PVVHGKTAGK RLRLFGVNMD CPTQDDGQSS SITMTHGTMG SFSSHLASSS LPPPLQLRAP TSAPMQAEFS KKGKNSLSFD LDL // ID U5GXP9_POPTR Unreviewed; 445 AA. AC U5GXP9; DT 11-DEC-2013, integrated into UniProtKB/TrEMBL. DT 11-DEC-2013, sequence version 1. DT 05-JUL-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP67302.1}; GN ORFNames=POPTR_0001s45650g {ECO:0000313|EMBL:ERP67302.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP67302.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP67302.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM000337; ERP67302.1; -; Genomic_DNA. DR RefSeq; XP_006370733.1; XM_006370671.1. DR EnsemblPlants; POPTR_0001s45650.1; POPTR_0001s45650.1; POPTR_0001s45650. DR GeneID; 18095998; -. DR Gramene; POPTR_0001s45650.1; POPTR_0001s45650.1; POPTR_0001s45650. DR KEGG; pop:POPTR_0001s45650g; -. DR eggNOG; ENOG410IVZA; Eukaryota. DR eggNOG; ENOG410YHK7; LUCA. DR OMA; MDCPITD; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000006729; Linkage group LGI. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 110 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 110 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 445 AA; 48947 MW; EB351E5832EB96CE CRC64; MEFGTGFSEG DQMSRGKGLP FSSYSSSNSS PSSSSSQQRN QLVLGQIYEN HQIGSWLGNK YDQVDQDTSR FNESVAVNAA KLDLMDVNDE EEGGRGESSS VQVIEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYLPLDS SSNEKGLLLN FEDMNGKAWR FRYSYWGSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGVG ELGKDRLYIN WRRRPDAPDD PSRHQHHFHN HHFSAIPWSP LLMRPPTVPV LPRDHLHLSN PNRNTCYKVG GSSYGYGYGN YSNVVNPCSS SGSVFYMTSS AGAGAALEPA PQQVGMGMVQ WQLGGGGVVE PVVYESVPVV QGKAAAKRLR LFGVNMDCPI TDQSDDYGHK LSSTTAAATT LPHNATIALQ PTPQLSSQSL QHPLHQLRLY RGTPLAAMPP STTQFLHKGK SSSPSSSSMS LDLDI // ID U7DT82_POPTR Unreviewed; 125 AA. AC U7DT82; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP46145.1}; GN ORFNames=POPTR_1461s00200g {ECO:0000313|EMBL:ERP46145.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP46145.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP46145.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE704087; ERP46145.1; -; Genomic_DNA. DR RefSeq; XP_006387231.1; XM_006387169.1. DR EnsemblPlants; POPTR_1461s00200.1; POPTR_1461s00200.1; POPTR_1461s00200. DR GeneID; 18108964; -. DR Gramene; POPTR_1461s00200.1; POPTR_1461s00200.1; POPTR_1461s00200. DR KEGG; pop:POPTR_1461s00200g; -. DR OMA; CKGWISF; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 125 AA; 14882 MW; 61B66D2F97C5E7F0 CRC64; MYPRLIFTKI LSQTDVKHRM TIPMKSFNVV FQIPQGKHYK RFVFIDMIDT GRPWSFRCST RKKDVYRKPV FSSGWIKYVR RKGLREGDQV SFFLVQKDGE EGLRFGVQAQ KKLIRLLGKD CWDTV // ID U7DU59_POPTR Unreviewed; 429 AA. AC U7DU59; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=POPTR_0848s00200g {ECO:0000313|EMBL:ERP46475.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP46475.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP46475.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE703523; ERP46475.1; -; Genomic_DNA. DR RefSeq; XP_006387561.1; XM_006387499.1. DR EnsemblPlants; POPTR_0848s00200.1; POPTR_0848s00200.1; POPTR_0848s00200. DR GeneID; 18109285; -. DR Gramene; POPTR_0848s00200.1; POPTR_0848s00200.1; POPTR_0848s00200. DR KEGG; pop:POPTR_0848s00200g; -. DR eggNOG; ENOG410IGAY; Eukaryota. DR eggNOG; ENOG410ZZ2C; LUCA. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 429 429 {ECO:0000313|EMBL:ERP46475.1}. SQ SEQUENCE 429 AA; 47147 MW; 14653C1EFCD06CE7 CRC64; MKKTDKKSLD PQLWQACAGS MVQIPPLNTK VFYFPQGHAE HSQSPVDFPQ RIPSLVLCRV ASVKFLADPG TDEVFAKISL VPLPDADLDI SQDVDICGDG NDSNNAEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TLIAKDVHGE VWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGVGIG SGPESSPSHI GWNSNNATSA NPYGGFSLSV KEDEMRNGGV KGRGRVKSEE VLEAAGLAAN GNPFQVVYYP RASTPEFCVK ASSVRAAMRT CWCSGMRFKM AFETEDSSRI SWFMGTVASV QVADPDRWPN SPWRLLQVTW DEPDLLQTVK CVSPWLVELV SNMPVIHLSP FSPPRKKLRF PQQLDFPLDG QFQLPSFSGN PLGPSSPLC // ID U7DUM1_POPTR Unreviewed; 118 AA. AC U7DUM1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP46680.1}; GN ORFNames=POPTR_0601s00200g {ECO:0000313|EMBL:ERP46680.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP46680.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP46680.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE703298; ERP46680.1; -; Genomic_DNA. DR RefSeq; XP_006387766.1; XM_006387704.1. DR EnsemblPlants; POPTR_0601s00200.1; POPTR_0601s00200.1; POPTR_0601s00200. DR GeneID; 18109484; -. DR Gramene; POPTR_0601s00200.1; POPTR_0601s00200.1; POPTR_0601s00200. DR KEGG; pop:POPTR_0601s00200g; -. DR OMA; KRNESMG; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 86 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 118 AA; 13506 MW; CD503D3209DED259 CRC64; MALVFSKFLT ADDIENGLSI PGCSLGPLPF QEGQSMNMHV HDGNGHEWIF SCTIKRNESM GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KNQAMGTWIK VEVKRKIRLF GEDVWADV // ID U7DW61_POPTR Unreviewed; 123 AA. AC U7DW61; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP47255.1}; GN ORFNames=POPTR_0219s00200g {ECO:0000313|EMBL:ERP47255.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP47255.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP47255.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702929; ERP47255.1; -; Genomic_DNA. DR RefSeq; XP_006388341.1; XM_006388279.1. DR EnsemblPlants; POPTR_0219s00200.1; POPTR_0219s00200.1; POPTR_0219s00200. DR GeneID; 18110043; -. DR Gramene; POPTR_0219s00200.1; POPTR_0219s00200.1; POPTR_0219s00200. DR KEGG; pop:POPTR_0219s00200g; -. DR OMA; RDESGHH; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 123 AA; 13884 MW; 77BF2001EEDA2E29 CRC64; MTTFSKILGK TDTSKTLSVP RKYLRSLPSF KGGHAVEFQA IDESGFVWTF QCSIRKKGQY PKPVLSKGWR AFVRNKKLKV GDKIKFSLNQ TAAATPFYRV RAEKEVKIFG AIFGYSPIIA TFP // ID U7DXJ1_POPTR Unreviewed; 119 AA. AC U7DXJ1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP46807.1}; GN ORFNames=POPTR_0492s00200g {ECO:0000313|EMBL:ERP46807.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP46807.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP46807.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE703195; ERP46807.1; -; Genomic_DNA. DR RefSeq; XP_006387893.1; XM_006387831.1. DR EnsemblPlants; POPTR_0492s00200.1; POPTR_0492s00200.1; POPTR_0492s00200. DR GeneID; 18109611; -. DR Gramene; POPTR_0492s00200.1; POPTR_0492s00200.1; POPTR_0492s00200. DR KEGG; pop:POPTR_0492s00200g; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 119 AA; 13525 MW; 00F30EF7D46335CC CRC64; MAQVSKILKK IDTTKRLSVP IRFLRSLPPF KLGSHAVTFE ATDEKGEAWA FQCSIRKRGH PKPVLQRGWV AFVRSKKLQV GDKVRFIKHK NRATAAISYK VRAEKAIKIF GATFGYARI // ID U7DYN2_POPTR Unreviewed; 122 AA. AC U7DYN2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP47257.1}; GN ORFNames=POPTR_0219s00220g {ECO:0000313|EMBL:ERP47257.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP47257.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP47257.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702929; ERP47257.1; -; Genomic_DNA. DR RefSeq; XP_006388343.1; XM_006388281.1. DR EnsemblPlants; POPTR_0219s00220.1; POPTR_0219s00220.1; POPTR_0219s00220. DR GeneID; 18110042; -. DR Gramene; POPTR_0219s00220.1; POPTR_0219s00220.1; POPTR_0219s00220. DR KEGG; pop:POPTR_0219s00220g; -. DR OMA; DENGSTW; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 13631 MW; 969756796699D8BF CRC64; MTTFSKILGK TDTSKTLSVP RKYLESLPSF KGGHAVEFQA IDESGFVWTF KCSIRKKGHP KPVLSKGWRA FVRNKKLKVG DKIKLSLNQT AAATPFYRVQ AEKEVKIFGA IFGYSSIIAT FP // ID U7DZ15_POPTR Unreviewed; 122 AA. AC U7DZ15; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP47362.1}; GN ORFNames=POPTR_0183s00210g {ECO:0000313|EMBL:ERP47362.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP47362.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP47362.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702897; ERP47362.1; -; Genomic_DNA. DR RefSeq; XP_006388448.1; XM_006388386.1. DR EnsemblPlants; POPTR_0183s00210.1; POPTR_0183s00210.1; POPTR_0183s00210. DR GeneID; 18110152; -. DR Gramene; POPTR_0183s00210.1; POPTR_0183s00210.1; POPTR_0183s00210. DR KEGG; pop:POPTR_0183s00210g; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 14282 MW; EF9AA00E271F2F21 CRC64; MEAVAMEKSV SKSDATNNRM EFPKKSLKNF PIPAGQNYFN FVAVDTLGQR WGFKVSIRNV GRYKKPWMSG QWRRFAREKG LKKGDRVKLT MHVEGNAVRS YHITAERNLM MRIWIPVEEF AR // ID U7DZS0_POPTR Unreviewed; 122 AA. AC U7DZS0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP48520.1}; GN ORFNames=POPTR_0021s00570g {ECO:0000313|EMBL:ERP48520.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP48520.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP48520.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702755; ERP48520.1; -; Genomic_DNA. DR RefSeq; XP_006389606.1; XM_006389544.1. DR EnsemblPlants; POPTR_0021s00570.1; POPTR_0021s00570.1; POPTR_0021s00570. DR GeneID; 18111234; -. DR Gramene; POPTR_0021s00570.1; POPTR_0021s00570.1; POPTR_0021s00570. DR KEGG; pop:POPTR_0021s00570g; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 122 AA; 14288 MW; 7E99E2CA48F9BCA7 CRC64; MEEVAMEKSV SKSDATNNRM ELPKESLGNF PIPAGQNYFN FVAMDTLGRR WGFKVSIRNV GRYKKPWMSG QWRRYAQEKG LKKGDRVKLI MQVEGNAVRS YRIRAERNLT MRIWIPVEEF AI // ID U7E047_POPTR Unreviewed; 119 AA. AC U7E047; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP47834.1}; GN ORFNames=POPTR_0074s00200g {ECO:0000313|EMBL:ERP47834.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP47834.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP47834.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702800; ERP47834.1; -; Genomic_DNA. DR RefSeq; XP_006388920.1; XM_006388858.1. DR EnsemblPlants; POPTR_0074s00200.1; POPTR_0074s00200.1; POPTR_0074s00200. DR GeneID; 18110605; -. DR Gramene; POPTR_0074s00200.1; POPTR_0074s00200.1; POPTR_0074s00200. DR KEGG; pop:POPTR_0074s00200g; -. DR OMA; VRDRSHR; -. DR OrthoDB; EOG09361GKZ; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 91 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 119 AA; 13877 MW; A8CA90E319CC6002 CRC64; MQIFSKVLRD TDVRVRFSFP THCLQHLDFA GNNSVDLHVK DSSGELRVIR CLKRKEDYDK PVLSKGWLKF VADYGLRVGD KVVLHREDDQ NLGSQFRIEA KRRINLFSEE VWGDVTRAN // ID U7E146_POPTR Unreviewed; 118 AA. AC U7E146; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP46896.1}; GN ORFNames=POPTR_0433s00200g {ECO:0000313|EMBL:ERP46896.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP46896.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP46896.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE703137; ERP46896.1; -; Genomic_DNA. DR RefSeq; XP_006387982.1; XM_006387920.1. DR EnsemblPlants; POPTR_0433s00200.1; POPTR_0433s00200.1; POPTR_0433s00200. DR GeneID; 18109695; -. DR Gramene; POPTR_0433s00200.1; POPTR_0433s00200.1; POPTR_0433s00200. DR KEGG; pop:POPTR_0433s00200g; -. DR OMA; CIKEDEN; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 86 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 118 AA; 13531 MW; CD50222D09C1CD59 CRC64; MALVFSKFLT ADDIENGLSI PGCSLGPLPF QEGQSMNMHV HDGNGHEWIF SCTIKRNESR GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KNQAMGTWIK VEVKRKIRLF GEDVWADV // ID U7E1B0_POPTR Unreviewed; 182 AA. AC U7E1B0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP48354.1}; GN ORFNames=POPTR_0025s00720g {ECO:0000313|EMBL:ERP48354.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP48354.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP48354.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702759; ERP48354.1; -; Genomic_DNA. DR RefSeq; XP_006389440.1; XM_006389378.1. DR EnsemblPlants; POPTR_0025s00720.1; POPTR_0025s00720.1; POPTR_0025s00720. DR GeneID; 18111088; -. DR Gramene; POPTR_0025s00720.1; POPTR_0025s00720.1; POPTR_0025s00720. DR KEGG; pop:POPTR_0025s00720g; -. DR OMA; PRVNIKS; -. DR OrthoDB; EOG09360P97; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 182 AA; 21144 MW; B8B28AED52742C2F CRC64; MGFSRERERD GSLFKPGEYR FIKRIHDDIP ENKPWIPRKF LRKIGNVLSK SATLEDPNGT LWRIELLKSA DGMVRFQKGW QDFADFYSLK KGDLLVFEYK GNSRFSVSIY KEMDYPAGSI DSVSSNQFGH FEEDMEDEDY LEFLAKLPKQ KPEVSYSFSK PASDSPSCMI IKSGRSRKRL KS // ID U7E1M3_POPTR Unreviewed; 122 AA. AC U7E1M3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP48514.1}; GN ORFNames=POPTR_0021s00510g {ECO:0000313|EMBL:ERP48514.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP48514.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP48514.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702755; ERP48514.1; -; Genomic_DNA. DR RefSeq; XP_006389600.1; XM_006389538.1. DR EnsemblPlants; POPTR_0021s00510.1; POPTR_0021s00510.1; POPTR_0021s00510. DR GeneID; 18111228; -. DR Gramene; POPTR_0021s00510.1; POPTR_0021s00510.1; POPTR_0021s00510. DR KEGG; pop:POPTR_0021s00510g; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 90 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 122 AA; 14095 MW; 2FC2F14D253F4099 CRC64; MEQVAMEKAL SKSDATNNRM ELPMESLRNF PIPDGQNYFE FVAMDTVDRP WEFKVSTRNE GKYKKPWMSG QWGSYAHEKG LKKGDRVKLI MQVEGNGVRS YRITAERNLA MGIWIPVEDF AS // ID U7E1T2_POPTR Unreviewed; 121 AA. AC U7E1T2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERP47196.1}; GN ORFNames=POPTR_0248s00220g {ECO:0000313|EMBL:ERP47196.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP47196.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP47196.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702957; ERP47196.1; -; Genomic_DNA. DR RefSeq; XP_006388282.1; XM_006388220.1. DR EnsemblPlants; POPTR_0248s00220.1; POPTR_0248s00220.1; POPTR_0248s00220. DR GeneID; 18109983; -. DR Gramene; POPTR_0248s00220.1; POPTR_0248s00220.1; POPTR_0248s00220. DR KEGG; pop:POPTR_0248s00220g; -. DR OrthoDB; EOG09361EH4; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 2 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 2 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 121 AA; 13360 MW; 81E98EDC8938DDD7 CRC64; MARFSKVLRK TDIKKRLSVP TGFLSSLSSF NGGAHAVDFQ AVDGSGRVWT FRCSIRKKGH PKPVISKGWL AFVASKSLKV GDKVQFLKEK NEAGAKTHAY EMRAEKEIKI FGAVFGYAPI I // ID U7E327_POPTR Unreviewed; 609 AA. AC U7E327; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=POPTR_0020s00210g {ECO:0000313|EMBL:ERP48576.1}; OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera OS subsp. trichocarpa). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; OC Populus. OX NCBI_TaxID=3694 {ECO:0000313|EMBL:ERP48576.1, ECO:0000313|Proteomes:UP000006729}; RN [1] {ECO:0000313|EMBL:ERP48576.1, ECO:0000313|Proteomes:UP000006729} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}; RX PubMed=16973872; DOI=10.1126/science.1128691; RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.; RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."; RL Science 313:1596-1604(2006). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE702754; ERP48576.1; -; Genomic_DNA. DR RefSeq; XP_006389662.1; XM_006389600.1. DR EnsemblPlants; POPTR_0020s00210.1; POPTR_0020s00210.1; POPTR_0020s00210. DR GeneID; 18111287; -. DR Gramene; POPTR_0020s00210.1; POPTR_0020s00210.1; POPTR_0020s00210. DR KEGG; pop:POPTR_0020s00210g; -. DR eggNOG; ENOG410JAV5; Eukaryota. DR eggNOG; ENOG41113VQ; LUCA. DR OMA; VELWHAC; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000006729; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000006729}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000006729}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 609 AA; 67469 MW; 4522271ACC20B801 CRC64; MRKGETGKKR SVAGEAKTSG SHEVGVLETT KWVKNGLPPP PHNPQENKND LYTELWYACA GPLVYVPRVG DKVFYFPQGH LEQVAAFLNE DSKTAMPIYD LPYKILCKVV HVQLKAEAKT DEVFAHITLL PVAEGDELSS NKDGESLLLH RKTRVLSFTK KLTPSDTSTQ GGFSVPKRHA EESLPPLDKS QQPPAQELLA KDLHGSEWRF RHIYRGQPKR HLLTGGWSTF ISSKRVVAGD SFIFLRGESG ELRVGVRRAM KLENNLSANV VTAHSMQLGI LSSASHAIST GSIFTIFFHP WTSPAEFIIP FDQYMKSAEI EYSIGTRFIM QFEGEECTEQ RIERCEGTVV GAEDVDHIRW PNSEWRILKV KWDAASDAFV HPERVSPWNI EPIEPIRKKH ASLVHQGKKA CIADKSLPRF LISPTIAHLL SPPNPEWNFS PIGKDNQEQF WMHGPVYPCP SSTVSFPGGN IARLGNPNSW CSTPSSYGVH DNAVGSRSLS VPFVSHNSGS QKWRGFELKH ANEVPLAAPH SGGSSYMLFG VNLENNPPEL PSPQVATSVV LENHNYVPLT SQSSVSEPSK STSGVNSDKQ CRNCSSAAIP SCTKVFYCL // ID V4JPP5_EUTSA Unreviewed; 261 AA. AC V4JPP5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ27155.1}; GN ORFNames=EUTSA_v10019015mg {ECO:0000313|EMBL:ESQ27155.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ27155.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ27155.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517953; ESQ27155.1; -; Genomic_DNA. DR RefSeq; XP_006389869.1; XM_006389807.1. DR GeneID; 18008913; -. DR KEGG; eus:EUTSA_v10019015mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 125 216 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 125 216 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 261 AA; 30254 MW; 99E9F0675F3996AE CRC64; MVESSELSYE QIRLKRVEEN KKRMFELNLN KLAQSLRVSS AKPCPAKTRM QRVPVDLSEV RRSNRPKNPP PSYREMGLEP LERPRRTYQR RDLLNRVYAS DEARVYAVHK AEMLQSSLEP GFPSFVKSML QSHVTGGFWL GLPHQFCRTH LPHRDEMITL VDENDEEFLA KYLAEKNGLS GGWRGFAIDH QLVDGDALVF HLINSTTFKV YITRVYDEAN NDSDRNDKEN EIEINKKQEE NCSEAGRLRS CSGKRKRGGR K // ID V4JST2_EUTSA Unreviewed; 350 AA. AC V4JST2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ28375.1}; GN ORFNames=EUTSA_v10019566mg {ECO:0000313|EMBL:ESQ28375.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ28375.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ28375.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517953; ESQ28375.1; -; Genomic_DNA. DR RefSeq; XP_006391089.1; XM_006391027.1. DR GeneID; 18009163; -. DR KEGG; eus:EUTSA_v10019566mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 65 120 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 184 294 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 65 120 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 184 294 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 39353 MW; 7EFBAE457DDC60A4 CRC64; MVSCCIDESS STSESFSTTT ATAAKFSAPP PPPLRLYRMG SGGSSVVLDS ENGVETESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA RSYDIAARKF RGRDAVINFK KSLSEDDNGE LAFLETHSKA EIVDMLRKHT FADELEQNNK RRFLSNGKRP LQNDTVSRNR EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPSPLGPLP LVTKGVLINF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVTFERSTGP DRQLYIDWKI RSGSSNNPVQ VVVRLFGVDI FNVTNAKTND VVAACGGKRS RDVDMFALRC SKKQAIINVL // ID V4JY27_EUTSA Unreviewed; 384 AA. AC V4JY27; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ30405.1}; GN ORFNames=EUTSA_v10012377mg {ECO:0000313|EMBL:ESQ30405.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30405.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30405.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30405.1; -; Genomic_DNA. DR RefSeq; XP_006393119.1; XM_006393057.1. DR GeneID; 18010888; -. DR KEGG; eus:EUTSA_v10012377mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 84 141 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 209 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 84 141 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 209 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 384 AA; 43560 MW; D12B06A4193A98A7 CRC64; MRPFEEEPDH NALLATETEK VATETEKVAT ETEKVATETE KVATETEKVA TETEKVATET EKVATETEKV ATETEKVASS GNARYKGVFQ QQNGHWGAQI YAGHKRIWLG TFKSATEAAT AYDSASIKIR PHDANSHRNF PWSDSTVQEP EFQEDYTIEA VVNMIKDGTY QQKFRDFVRT RSQMAATVGS KQSRGDEESN NCFSCKQLFT KKLTPSDVGK LNRLVIPKKY AVKHLPPLSV DQNEREEGEV GGSVDDVEVV FYDKAKTQWK FKYCYMRTSQ TFAFTIGWNR FVKEKKLKEN DVIVFYQCND ECGFKKMIDV QSNKMIDVQY FSDNGFVDPK GVNNKVDDST KTGNDFGPKL EDEETKSAEE KKGGFMLFGV RIQQ // ID V4JYG5_EUTSA Unreviewed; 224 AA. AC V4JYG5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ30540.1}; GN ORFNames=EUTSA_v10011760mg {ECO:0000313|EMBL:ESQ30540.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30540.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30540.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30540.1; -; Genomic_DNA. DR RefSeq; XP_006393254.1; XM_006393192.1. DR GeneID; 18010811; -. DR KEGG; eus:EUTSA_v10011760mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 25956 MW; 01CFCB6E54F9B484 CRC64; MKTSRRSSVR STSAAYQRRL EPEPKPALDR FMKIILHSTI KEKMMKIPAR FVRLGPKLTD TVTIETPAGF KRSIRIKRVG DEVWFENGWS EFAKAHSLSK GHFLYFYYKG NSSFRVVIFD VSALEIDYPL DKVDVIESDD DDDDEVMEVM DLEEEEEEEE EGFSGVESSD DDSCSVIDLE EMLKKKPRVN IKSEQITTDD VEEIDSMDDI EEYEIALTRR KRSS // ID V4K1E7_EUTSA Unreviewed; 854 AA. AC V4K1E7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10003641mg {ECO:0000313|EMBL:ESQ31730.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ31730.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ31730.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517748; ESQ31730.1; -; Genomic_DNA. DR RefSeq; XP_006394444.1; XM_006394382.1. DR GeneID; 18012800; -. DR KEGG; eus:EUTSA_v10003641mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 728 812 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 854 AA; 95230 MW; 0921E3F621957DB1 CRC64; MASSEVSVKG SRGGENFSSA GYSDPKETRN VSVVGEGQKS NSNRSVVAER AVDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEP NQDENAIEKE TPPPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEDSDP TRWAKSKWRS LKVRWDETSS IPRPDRVSPW KIEPALAPPA LSPVPMPRPK RPRSNIAPSS PDSSMLQREG STKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDVPE NSVVWQSSAD DDKVDVVSAS RRCENWMSSG RHEPAPFTDL LSGFGANINP SFGQRIPFYD HSSSPSVPAK KILSDHDGKF DFFANQWQMM HSGLSLKLHE SPKVSAPSDA SFQGRGNVKY GEYPVLHDLT TENTGGNWPI RPRALNYFED VVHSQAREHV AKRPAVVQEE TTKARDGNCR LFGIPLVNNM NGADSTMAQR NNLKDAAGLT QTAPPKVQDL SDQSKGSKST NDQREQGRPF QTNHPHPKDA HTKTNSSRSC TKVHKQGIAL GRSVDLSKFQ NYEELIAELD RLFEFNGELM APKKDWLIVY TDDENDMMLV GDDPWQEFCC MVRKIFIYTK EEVRKMNPGT LSCRSEEEAV VGEGSDAKDA KSASNPSLSS AGNS // ID V4K9F8_EUTSA Unreviewed; 351 AA. AC V4K9F8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ34300.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10009500mg {ECO:0000313|EMBL:ESQ34300.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ34300.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ34300.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ34300.1; -; Genomic_DNA. DR RefSeq; XP_006415947.1; XM_006415884.1. DR GeneID; 18992480; -. DR KEGG; eus:EUTSA_v10009500mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 157 254 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 255 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 157 254 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 255 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 351 351 {ECO:0000313|EMBL:ESQ34300.1}. SQ SEQUENCE 351 AA; 39922 MW; 2362369179B0EA31 CRC64; MAGQSLHSPT KPHFFQPLLP GFHSHLNMPV SFFSKHVEGR HNQNKTAKLR SDASEKTWSV KMDGLKFTDG WEDFAVAHDL RIGDIIIFRH EGDMVFHVTA LGPSCCEIQY TSSTSNETDG NGDDQTNHIG NRTRVKRKRV KKNRRKKAES SSSDHSHFEA KVSASSLEMD RLYLPRIFAR SNGLDKMSGE KILLLNEEGR SWNLNLKYNE AGMHTFIRPG WRRFCAQNGM KQGHYTFKLV QKSGPPVIRL CRALHRAKTD QESSLHHSCY YLPQGFTRLN GINKPGKITL LGEDGVKKVV DLLQNKRTGT MRIGKGWREF CDAHGVKIGE SFVLELIWEE KASPVLKFCT K // ID V4KB06_EUTSA Unreviewed; 1083 AA. AC V4KB06; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10006635mg {ECO:0000313|EMBL:ESQ34880.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ34880.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ34880.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ34880.1; -; Genomic_DNA. DR RefSeq; XP_006416527.1; XM_006416464.1. DR GeneID; 18993000; -. DR KEGG; eus:EUTSA_v10006635mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 955 1048 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1083 AA; 119803 MW; FAAA4B1EA806B2FD CRC64; MKAPSNGFHP NSTEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDDLDIENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA TTQLPSALSS YNLPNNFASN DPSKLLNFQS PNLSPANSQF NKPNMVNHIS QQMQAQPAIV KSQQQQQQQQ QQLQQQVQMS HQQLQQHHQQ QQGIYNIGSV NNGVTVVSNQ ASCQNQSTGF SQAQLQQQSM LSNGATMTQQ NIVSGGIKGS SQMTSLAQEL QFQQQLELHN SSQLLRNQQE QSSMHTLQQT LSQNPQQLQM QQQSSKQSPS QQLQLQLLQK LQQQQQQQSI PPVSSSIQPQ LSALQQAQSH QLQQLLSSQN QQPLAHGNNS FSASTFMQPP QIQVSHQQQG QMNNKPLVTT GRSHSGHTDG EAPSCSTSPS ANNTGHDNVS PTNFLSRNLQ QGQGVSVSPS DSVFERASNQ GQELYAKTES RVNQGMVNLK SAPEHFKFKG AVTDQLDVST AGATYCPDVV GPAQQQQTFP LPSFGFDGDC QSQHPRNSLG FAGNLEAVTS DALYSQKDFH NLVPNYGNAP RDIETELSSA AISSQSFGIP SIPFKSGGSN EIGGINDSGI MNGGGLWPNQ TQRMRTYTKV QKRGSVGRSI DVTRYSGYEE LRHDLARMFG IEGQLEDPQT SDWKLVYTDH ENDILLVGDD PWEEFVNCVQ NIKILSSAEV QQMSLDGDLA AIPATNQACS ETDSGNAWKV HYEDTSAAAS FNR // ID V4KG44_EUTSA Unreviewed; 801 AA. AC V4KG44; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10018139mg {ECO:0000313|EMBL:ESQ28807.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ28807.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ28807.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517953; ESQ28807.1; -; Genomic_DNA. DR RefSeq; XP_006391521.1; XM_006391459.1. DR GeneID; 18008926; -. DR KEGG; eus:EUTSA_v10018139mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 694 778 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 801 AA; 89264 MW; EAE1647CF9D7C393 CRC64; MNLSTSGFGH QSHEGEKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE VEGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMVLQ PLTQEEQKDT FVPIELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHASR PQTIVPSSML SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITGIG DLDSVRWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT TFPMYPSLFP LRLKRPWHPG ASSMHDSRGD IASGLTWFRG GAGENGMLPL NYPSASLFPW MQQSLLGTDQ NQQYQAMLAA GLQNIGGGDP LRQQFVQLQE PNHQYLQQSA SLHNSDLLLQ QHHQASSQQQ LPRHLLQAQT QMTENLPQQN LRQEVSNQVT GQPQQPNRVW QHSDLLSPSF MKSDFADLNN KFTSTANPVQ QQNSTLQGSG DGSNLLNFSI TGQSSVHSEQ IPTQVWSLKH SHPETNEFSE PLSLRQAYGG TSPSLEPPNT QNLSLFGVDS DSGLFLPTTV PHFGTLSADA DTSSMPLTDS GFQNSLYGSM QDTTELLHGA GQTKNFVKVY KSGSVGRSLD ISRFSSYHEL REELGKMFDI KGLLEDAFRS GWQLVFVDKE DDVLLLGDDP WESFVNSVWY IKILSPEDVQ KMGEHGEGGS NGSYPQNLTH F // ID V4KGP0_EUTSA Unreviewed; 360 AA. AC V4KGP0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ30364.1}; GN ORFNames=EUTSA_v10012356mg {ECO:0000313|EMBL:ESQ30364.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30364.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30364.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30364.1; -; Genomic_DNA. DR RefSeq; XP_006393078.1; XM_006393016.1. DR GeneID; 18010847; -. DR KEGG; eus:EUTSA_v10012356mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 106 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 182 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 106 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 182 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 360 AA; 40747 MW; 4E6112A44EF9AFD2 CRC64; MDIDQTGTET KTMETTSGSS DSVLRLTQSL KPTESTSTNF ALSNTATTKY KGVVQQQNGH WGAQIYANHK RIWLGTFKSA AEAAAAYDSA SIKLRSFDAN SHRNFPWSDL TVHEPDFQVR HTTEAVLNMI RDGSYQHKFR DYLRVKSQFV ANINIVGSKQ SRGGGGEGGQ ESNKCFTWML LFQKQLTPSD VGKLNRLVIP KKYAVKHLPF ISDDQNEREE GEVGGSVDDV EVVFYDKAMR QWKFRYCYWR SSQSFVFTRG WNGFVKEKNL KENDVIVFYN CDVPSNVKTL EGQSNNFLMI DVQYFSGNGF VDPKGLNKTA HEISDEEMKT GNVFDPKLED KGTKSEEKKG GFMLFGVMIQ // ID V4KGS2_EUTSA Unreviewed; 137 AA. AC V4KGS2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ30404.1}; GN ORFNames=EUTSA_v10012266mg {ECO:0000313|EMBL:ESQ30404.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30404.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30404.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30404.1; -; Genomic_DNA. DR RefSeq; XP_006393118.1; XM_006393056.1. DR GeneID; 18011048; -. DR KEGG; eus:EUTSA_v10012266mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 137 AA; 15999 MW; 1BEFF4270693BEAF CRC64; MIPNTYAVKH LPYISIDQND REEGEIAEDV EEVVVYDKAM TQWKFKYCYL RSSQSFVFTR GWNGFVKEKN LKENDVILFY ECDDVKTLQG QSKILMIDVQ YSSDNGFVDS KGVNNKVDES SDEERKTGND FDPQVRR // ID V4KH98_EUTSA Unreviewed; 224 AA. AC V4KH98; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ30539.1}; GN ORFNames=EUTSA_v10012062mg {ECO:0000313|EMBL:ESQ30539.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30539.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30539.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30539.1; -; Genomic_DNA. DR RefSeq; XP_006393253.1; XM_006393191.1. DR GeneID; 18011107; -. DR KEGG; eus:EUTSA_v10012062mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 224 AA; 25323 MW; 99861F0DD51AB4FC CRC64; MDSAHNQLNK RARLFGDLEN KDAKVIYPPI PASTAPLNKG SDGSTATQSL FAESKPEETP KVLKKRGRKK KNPNPEEMNS STPGGDDSEN RSKFYESASA RKRTVTAEER ERAINAAKTF EPTNPFFRVV LRPSYLYRGC IMYLPSGFAE KYLSGISGFI KLQLGEKQWP VRCLYKAGRA KFSQGWYEFT LENNIGEGDV CVFELLKTRD FVLKVTAFRV NQYV // ID V4KI31_EUTSA Unreviewed; 568 AA. AC V4KI31; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=EUTSA_v10012074mg {ECO:0000313|EMBL:ESQ30869.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30869.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30869.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30869.1; -; Genomic_DNA. DR RefSeq; XP_006393583.1; XM_006393521.1. DR GeneID; 18010856; -. DR KEGG; eus:EUTSA_v10012074mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 449 531 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 10 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESQ30869.1}. SQ SEQUENCE 568 AA; 63793 MW; 0BBC9822E47329C8 CRC64; SSVKRTPHMF CKTLTASDTS THRGFSVPRR AAEDCFAPLL YLDHLIAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRDEDGELR LGIRRSARPR NGLPDSIIEK NSCSNILSLV ANAVSTKSMF HVFYSPRFRM RFEMEDSPER RCAGVVTGVC DLEPYRWPNT KWRCLLVRWD ESFVSDHQER VSPWEIDPSG SLPQLSIQSS PRPKRPWAGL LDTTPPGNPI TERGGFLDFE ESVRPSKVLQ GQENIGSASP LQGFDVMNRR ILDFAMQSHA NPILLSSRVK DRFGEFVDAT SLDPACSGVM NLDRFPRVLQ GQEICSLRSF PQIAGFSPAA TSGKPNLGYT DPFAYNQANK SKKSSVYPIN FGGETRKFLA QKEGGLPKNV TADFPFKIDM MGKQKGGDFD MNASSECKLF GFSLPVETPA ANPQSSSKRI CTKVHKQESL VGIAIDLSRL NGYNDLLTEL ERLFNMEGLL RDPEKGWRIL YTDSENDMMV VADDPWHDFC NVVLKIHLYT KEEVENGNND NKSCLEQVAV LMEASVSQPD SSPTVTRV // ID V4KJ90_EUTSA Unreviewed; 582 AA. AC V4KJ90; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10018331mg {ECO:0000313|EMBL:ESQ27333.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ27333.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ27333.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517953; ESQ27333.1; -; Genomic_DNA. DR RefSeq; XP_006390047.1; XM_006389985.1. DR GeneID; 18008417; -. DR KEGG; eus:EUTSA_v10018331mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 582 AA; 63468 MW; 62661A5604B08D49 CRC64; MSPPSANADV LREVDPRIWR ACAGASVQIP TLYSRVYYFP QGHVEHCCAS SVISSFPSST SPVPCIVSSI ELLADPITDE VFAHLFLQPI APDQFMPPNF SRFGRYESED EENKVVTFAK ILTPSDANNG GGFSVPRYCA DSVFPSLDFQ ADPPVQKLFI TDIHGVLWDF RHIYRGTPRR HLLTTGWSKF VNSKKLIAGD SVVFMRKSPD ALFIGVRRAP ISNSGGTSFY GGAGAGAGGD EFSSYYQSSV VAAKDEDPSV KKGFRRTGRG KLTTEAVAEA INKAAQGLPF EVVYYPTAGW SDFVVRAEDV EASMAIFWTP GTRVKMAMET EDSSRITWFQ GIVSSTFQET GPWRGSPWKQ LQITWDEPEI LQNVKRVNPW QVEIVANSSQ LHAAFPPTKR LKFPHSAGGL LSGEEGDHLY SQRGLLSSVA PAGDPSPYMF PYTTFPAGMQ GARHYEFGSF NPTGFIGENP PQLCNNNFFS PLPGLGKVST EMNFGSPPSE DLSPNSNTTN LSSGNDPVGN RGPTSARTNS FQLFGKIINV QEPSESGLAE SGLYEEDGSK ESSDNEVLNE TQLSLTHGPQ GM // ID V4KKF6_EUTSA Unreviewed; 320 AA. AC V4KKF6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ30407.1}; GN ORFNames=EUTSA_v10012161mg {ECO:0000313|EMBL:ESQ30407.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30407.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30407.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30407.1; -; Genomic_DNA. DR RefSeq; XP_006393121.1; XM_006393059.1. DR GeneID; 18011057; -. DR KEGG; eus:EUTSA_v10012161mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 85 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 154 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 85 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 154 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36978 MW; 35E7EF8FD7BD0EA3 CRC64; MRPFKEEPDN ALVATATKKV ASCSSNAKYK GVVQQQNGHW GAQIYTDHKR IWLGTFKSAA EAATAYDSAS ILLRSFDANS HRNFPCSDFT VHEPRFQKLH STEAVLNMIR DGSYQQKFKE FLSQMATRIN TGGSKQSRGD KESDNKCFSC KQLFQKKLTP SDVGKLNRLV IPKKYAVKHL PYISIDQKDR EEGEISEEVE VVFYDTGKRQ WKFRYCYWRS SQSFVFTRGW NGFVKEKNLK ENDVILFYEC NLKTLDGQSK NFWMIDILFF SDDEKENESA HNSSVKELKT ENFISSKLED EETKSEKKKG GFKLFGVMIQ // ID V4KKN9_EUTSA Unreviewed; 721 AA. AC V4KKN9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10029379mg {ECO:0000313|EMBL:ESQ38445.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ38445.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ38445.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517537; ESQ38445.1; -; Genomic_DNA. DR RefSeq; XP_006396992.1; XM_006396929.1. DR GeneID; 18014969; -. DR KEGG; eus:EUTSA_v10029379mg; -. DR KO; K14486; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 511 592 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 721 AA; 81425 MW; E672A26090A28AE8 CRC64; MENNQVMDAE YEFPGIDNSR LDYLYDELWK LSAGPLFDLP KFGEKVYYFP QGHIEHLEAH TKDELSQLRP IFDIPSRIGC SVIDIQLKVE NETDEVFAKI ALLPDTAEVE IPISNVNHER IKVSSFIKVL TASDTSTHGG LSVIKRHAVE CLPPLDMSQP TPSQEIVAKD LHGCEWKFKH IFRGSPLRHI FTTGWSGFAT SKRLVTGDSF IFLRGENGES RVGIRRAVHQ QRSIPLSIIS KESMHHGITA TAMNAINTKS MFIVFCKLRS SQFIVNFDKV VDAVNNKFYV GSRFTMRFEN YDFTVIRYSG TIIGKKDFSS HWRDSEWRCL EVQWDEPALI PRPNKVSSWE IEHMGSSSNV HQSALLKNKR SRQAKETSSN LWPPTLTQGQ EIGQSTVNFP MSVPPLSYCD ATDSSNISSG WPIGYSVPTM PKPNYNNEMV MSVKEKMTTA VTTANYRLFG VDLTSPRETE DPIRQIDSYQ KSEMCKITKE KNCDQIQTRA SPKEIQSKST RSRIKVHMQG VAIGRAVDLT ILDGYNQLID ELEKLFDLKD ELHTRNQWEI IFTDDEGDMM LVGDDPWPKF CNMVKKIFIC SKEEVGSQMT CADGIIQVGG SVEGCEGSPV QPQSEAQQIR TEPSSSGGAH QTSPNRAQAA FDPTALMNAF AAQMQELVRS NDAKFATLTA QISNLQQESP IRRRNLISDF QEERDPQCTV ARSVVQQYQQ T // ID V4KNU7_EUTSA Unreviewed; 263 AA. AC V4KNU7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ39550.1}; GN ORFNames=EUTSA_v10000999mg {ECO:0000313|EMBL:ESQ39550.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ39550.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ39550.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517465; ESQ39550.1; -; Genomic_DNA. DR RefSeq; XP_006398097.1; XM_006398034.1. DR GeneID; 18016320; -. DR KEGG; eus:EUTSA_v10000999mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 263 AA; 30147 MW; E4D94029B09AC203 CRC64; MAETDNDVVL PRFFKVFLSE TASESMSIPV SFSEHLEDPL PQTVKLQGTG GGIWTVSFKK IRQRAYFTAG WSKFAEDHDL KNGEFLTFVY DGYNTFEVSV YNRWGSKETR AVKETVEISD TESEEEEEAV ADSDYEEEEE DPLVDGGEDT ESDDAGISQS EVTSMSMTNP YFTTGLKNRI YELLIPAEVV KDMGFRFGES IKYVDEEGTM VGERGKWADD RICFKGWDRI CRRNRLRVQD KVNCEMLHHR KLVHSIKIHI TRG // ID V4KQC1_EUTSA Unreviewed; 667 AA. AC V4KQC1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10023326mg {ECO:0000313|EMBL:ESQ29528.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ29528.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ29528.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517881; ESQ29527.1; -; Genomic_DNA. DR EMBL; KI517881; ESQ29528.1; -; Genomic_DNA. DR RefSeq; XP_006392241.1; XM_006392179.1. DR RefSeq; XP_006392242.1; XM_006392180.1. DR GeneID; 18010272; -. DR KEGG; eus:EUTSA_v10023326mg; -. DR KO; K14486; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 544 637 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 74307 MW; 071075680B98EA6A CRC64; MDSQMAASNH SSGKPGGVLS DALYRELWHA CAGPLVTLPR EGERVYYFPE GHMEQLEASM HQGLEQQMPS FNLPSKILCK VINIQRRAES ETDEVYAQIT LLPELDQSEP ISPDAPVQEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHNNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENE ELRVGVRRHM RQQTNIPSSV ISSHSMHIGV LATAAHAITT GTIFSVFYKP RTSRSEFIVS VNRYLEAKNQ KLSVGMRFKM KFEGEEAPEK RFSGTIVGVQ ENKSSVWHDS EWRSLKVQWD EPSSVFRPER VSPWELEPLV ANSTPSSHPQ PPPRNKRPRP PGLPSPTTGP PTPDGVWKSP ADTPSLVPLF SPPAKIATFG HGGNKLHGGV SIGAAFWPSH AESATESFAS AFNNESTEKK QSNGNVCRLF GFELVENVNV DECFSAASVS GAVAVDQPIP SNEFDSGQQP EPLNINQFDI PSGSGDAEKS SLRSPPESQS RQIRSCTKVH MQGSAVGRAV DLTRSECYDD LFKKLEEMFD IKGELLESNK KWHVVYTDDE DDMMMVGDDP WNEFCGMVRK IFIYTPEEVR KLSPKNKLTV NVRIQPKTDA EENENTEGRS SSMAGSR // ID V4KRK1_EUTSA Unreviewed; 305 AA. AC V4KRK1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ40545.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10015675mg {ECO:0000313|EMBL:ESQ40545.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ40545.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ40545.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ40545.1; -; Genomic_DNA. DR RefSeq; XP_006399092.1; XM_006399029.1. DR GeneID; 18018146; -. DR KEGG; eus:EUTSA_v10015675mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 162 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 45 162 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 305 305 {ECO:0000313|EMBL:ESQ40545.1}. SQ SEQUENCE 305 AA; 34340 MW; A3F95257051B3CD7 CRC64; MSVNHYSTDH HHHNTLLWQD RHATDTSEAT TATWLNDDQQ KESLFEKSLT PSDVGKLNRL VIPKQHAEKY FPLNAVIVSS SGGADTSSST STEKGMLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRF VKDKQLDPGD VVFFQRQRSD SRRLFIGWRR RGQGSSTNSA VNTTSYASSM AAPPYLQIHA SSNNYPNPPP HSEYSHYGAA VVTAAETHSI PSSSAVVGSS RTVRLFGVNL ECQMDEDDDG DDSVTAAECP ADGYYGQYMH YYYTPHPHSM MKWETDEIII ETKVGPTKMM VYRIG // ID V4KSG6_EUTSA Unreviewed; 367 AA. AC V4KSG6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ34239.1}; GN ORFNames=EUTSA_v10007983mg {ECO:0000313|EMBL:ESQ34239.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ34239.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ34239.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ34239.1; -; Genomic_DNA. DR RefSeq; XP_006415886.1; XM_006415823.1. DR GeneID; 18992424; -. DR KEGG; eus:EUTSA_v10007983mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 122 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 199 311 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 122 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 199 311 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 367 AA; 40869 MW; 59A31E2B557F0ADD CRC64; MEYSCIDDTT STTSESLSTS TPSPKKTTEK LSPPAMRLYR MGSGGSSVVL DSDNGVETES RKLPSSKFKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AASSYDIAAR RFRGRDAVTN FKTPAIDNDG DDAESAFLES HSKAEIVDML RKHTYADELQ QSKRRFLDGN GNGKRCESTT IMTSPHGNDG VLRPREVLFE KTVTPSDVGK LNRLVIPKQH AEKHFPLPAM TTATATTNPS PTKGVLINLE DRAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLRAGDA VCFERSTGPD RQLYIDWKVR SGTELISTPV QTVVRLFGVN IFKPNDVAGE CGGKKRSREV DLFALGCSKK QAIINAL // ID V4KSQ3_EUTSA Unreviewed; 354 AA. AC V4KSQ3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ30408.1}; GN ORFNames=EUTSA_v10012152mg {ECO:0000313|EMBL:ESQ30408.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ30408.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ30408.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517809; ESQ30408.1; -; Genomic_DNA. DR RefSeq; XP_006393122.1; XM_006393060.1. DR GeneID; 18011058; -. DR KEGG; eus:EUTSA_v10012152mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 55 112 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 184 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 55 112 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 184 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40758 MW; 99A8B3864EBB5962 CRC64; MFLKSSVISM DNAKSESSSD SFLPLKKRMR PFEEEPDNAL IATATKKVAY SGNARYKGVV QQQNGHWGAQ IYADHKRIWL GTFKSAAEAA TAYDSASIKL RGLDANAHRN FPWSDLTVHE PEFQEEHTTE AVLNMIRDGS YQQKFRESLS KRSQMVAMIN TVGSEQSRRD QESDNKCFSC KQLFQKKLTP SDVGKLNRLV IPKKCAVKYL PFLSVVQNER EEGEIAEDVE VVFYDRGMRP WKFRYCYWRS SQSFVFTRGW NGFVKEKNLK ENDVIVFYEY DVSSNVKTLD GQSKKFWMID IHIFSGDEEV NETVHNSSVK ELKTENFFSS KLEGEETKAE EKKGGFKLFG VMIH // ID V4KUY6_EUTSA Unreviewed; 895 AA. AC V4KUY6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10006747mg {ECO:0000313|EMBL:ESQ33837.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ33837.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ33837.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ33837.1; -; Genomic_DNA. DR RefSeq; XP_006415484.1; XM_006415421.1. DR GeneID; 18992066; -. DR KEGG; eus:EUTSA_v10006747mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 755 839 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 895 AA; 98320 MW; A8AE02C2B4D88EC2 CRC64; MRLSSAAFSP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFFN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLKEDDMGM GMSSPLMWDR GLQSLNFQGM GVNPWMQPRL DASGLLGMQN DVYQAMAAAA LQDMRGIDPA KAAASLLQFQ NPSGFSMQSP SLVQPQMLQQ QLSQQQQQQQ QQAYLGVPET HQSQSQSQSN NLLSQQQQQQ QQQAVDNHNP SASGAAVVSA MSQFGSASQS NTSPLQSMTS LCHQQSFSDT NGGNNPISPL HSLLSNFSQD ESSQLLNLTR TNSAMTSSGW PSKRPAVDST FQHSGAGNNN TQSVMEQLGQ SHTSNVPPNA VSLPPFPGGG RECSIEQEGS ASDPHSHLLF GVNIDSSSLL MPNGMSNLRS IGIEGGDSTT LPFTSSTFNN DFSGNLAMTT PSSCIDESGF LQSSENLGSE NQQSNTFVKV YKSGSFGRSL DITKFSSYHE LRSELARMFG LEGQLEDPVR SGWQLVFVDR ENDVLLLGDD PWPEFVSSVW CIKILSPQEV QQMGKRGLEL LNSAPSSNNV DKLPSNNGNC DDFGNRSDPR NLGNGIASVG GSFNY // ID V4KUZ6_EUTSA Unreviewed; 135 AA. AC V4KUZ6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ35149.1}; GN ORFNames=EUTSA_v10009082mg {ECO:0000313|EMBL:ESQ35149.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ35149.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ35149.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ35149.1; -; Genomic_DNA. DR RefSeq; XP_006416796.1; XM_006416733.1. DR GeneID; 18993229; -. DR KEGG; eus:EUTSA_v10009082mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 135 AA; 15815 MW; 56D91E271651297C CRC64; MAATNEESFI KPFISEKSSE SLEIPLGFNE YFPHPLPNTV ELLDYCGRSW TIRMKRIGDK VFLTVGWENF VKENNLEDGK MMNFIYDCNR TFHVIIFGHH GVSEFIDFPQ VVMDVDEYET CEEEEEEEDD NNISN // ID V4KUZ7_EUTSA Unreviewed; 351 AA. AC V4KUZ7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ31183.1}; GN ORFNames=EUTSA_v10004496mg {ECO:0000313|EMBL:ESQ31183.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ31183.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ31183.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517748; ESQ31183.1; -; Genomic_DNA. DR RefSeq; XP_006393897.1; XM_006393835.1. DR GeneID; 18013193; -. DR KEGG; eus:EUTSA_v10004496mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 236 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 236 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 40360 MW; 90B0A3FA4ABC9BAB CRC64; MVESGEKVSP PSSSQPKDLE FFKVFLPEFS ARELEIPTAF IDILEKPIPK QVLLVDEIGR LWGVETKAEE RNRLVVFQKG WERFANDQSL EFGDFLVFSY DGDSRFSVSI FAKEGCKKDL GVVSTNRVSV EKGPVAVEPA DISTNPGRRE RRGKRVNLNR KRDLVKEKPS VRAETEPQYV STIKTEPDYV PAIKTEPKHR ENTLRKVNRS RDPCGISWVP KKKHKGFEES EYKPKNPHFV RNITSGSLRQ MEIPTTFLKS NGIDMEKDIE LCDENGKKWP LKIVNHCSRG LKFSYDSWLL FSQSHKLRRP DKCLFEFIVT SDGRCNQVLV RILPGRLLTT VSKNRYQVLA M // ID V4L0J9_EUTSA Unreviewed; 728 AA. AC V4L0J9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ37139.1}; GN ORFNames=EUTSA_v10003110mg {ECO:0000313|EMBL:ESQ37139.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ37139.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ37139.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517609; ESQ37139.1; -; Genomic_DNA. DR RefSeq; XP_006418703.1; XM_006418640.1. DR GeneID; 18013562; -. DR KEGG; eus:EUTSA_v10003110mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 579 681 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 579 681 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 728 AA; 80135 MW; 980AB72154139945 CRC64; MKSLHVTANG GDLAENCGIL AGDADDAVLM DGMDGVSREI WLDDHGGDNN HHHGHGHHED DDLIVHHDPS IFYGDLPTLP DFPCMSSSSS SSTSPAPVNA IVSSASSSSA ASSSTSSAAS WAILRSDGED PAHNQNQYGS GNCDVESSAA ALQSTASMEI PLENSQGFGC GEGGGDCIDM MDTFGYMDLL DSNEFFDTSA IFSQDDDTQN PNLMDQTLER QDQMVIPMME NYNNSGGDDM QMMNSSLEQD DDLASVFLEW LKNNKETVSA EDLRKVKIKK ATIESAARRL GGGKEAMKQL LKLILEWVQT NHLQRRRTNT SNNLSYQQSY QQDPFQNPNP NHNNSIIPPS DQTCFSPSTW VPPPQPPQQP AFVSDPGFGY MPAPNYPPPP EYLPLLESPP SWPPPQSGPM PHQQFAMPPN SPYSPFQDPG GGFNGYNMNP YQYPYLPSGQ IRDQRLLRLC SSATKEARKK RMARQRRFLS HHHRHTNNNN NPNQAQLGET CPVVAPQLNP VAATATGGTW MYWPNVPAVP PPGAAQLPAM ETQLPPMDRA GSVSAMPRQQ VVPDRRQGWK PEKNLRFLLQ KVLKQSDVGN LGRIVLPKKE AETHLPELEA RDGISLAMED IGTSRVWNMR YRFWPNNKSR MYLLENTGDF VKTNGLQEGD FIVIYSDVKC GKYLIRGVKV RQPAGQKPET PPSSAAATKR QSKSQRSIHN NSPSAIVLAT SPTSQTVK // ID V4L0T8_EUTSA Unreviewed; 584 AA. AC V4L0T8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10005857mg {ECO:0000313|EMBL:ESQ43890.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ43890.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ43890.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517455; ESQ43890.1; -; Genomic_DNA. DR RefSeq; XP_006402437.1; XM_006402374.1. DR GeneID; 18020314; -. DR KEGG; eus:EUTSA_v10005857mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 480 572 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 584 AA; 65661 MW; 82ABF2634DE857CA CRC64; MANVDGDDFR NSSPRSYQDQ LYTELWKACA GPLVEVPLAE ERVFYFPQGH MEQLVASTNQ GIESEEIPDF NLPPKILCRV LSVMLKAEHE TDEVYAQITL QPEVDQSEPT PLVEPTKQMF HSFVKILTAS DTSTHGGFSV LRKHATECLP ALDMTQATPT QDLVTRDLHG VEWRFKHIFR GQPRRHLLTT GWSTFVSSKR LVAGDAFVFL RGENGDLRVG VRRLARHQST MPTSVISSQS MHLGVLATAS HAVRTQTLFV VFYKPRISQF IVGVNKYMEA MKHGFSLGTR FRMRFEGEES PERIFTGTIV GTGDLSSQWP ASKWRSLQVQ WDEPTTVQRP DKVSPWEIEP FLPTSPVSTP AQPKCKRSRP IESSVLTPAP ANLLYSFPQS QDPTNASLKL FQDPSTERNP GGFAINNSFK ADTPTPASCC YRLFGFDLAS SPPALIPPEK QSLDTSAVAK CQEPITPNAS NEQKKQQTSR TRTKVQMQGI AVGRAVDLTL LKSYDELIKE LEEMFEIQGQ LLSRDKWIVV FTDDEGDMML AGDDPWNEFC KMAKKIFIYS SDEVKKMTTK MKISSSLEDE ESMD // ID V4L254_EUTSA Unreviewed; 901 AA. AC V4L254; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10006747mg {ECO:0000313|EMBL:ESQ33838.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ33838.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ33838.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ33838.1; -; Genomic_DNA. DR RefSeq; XP_006415485.1; XM_006415422.1. DR GeneID; 18992066; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 761 845 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 901 AA; 98959 MW; 946282D37FB7DB02 CRC64; MRLSSAAFSP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFFN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMGMSS PLMWDRGLQS LNFQGMGVNP WMQPRLDASG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNPSG FSMQSPSLVQ PQMLQQQLSQ QQQQQQQQAY LGVPETHQSQ SQSQSNNLLS QQQQQQQQQA VDNHNPSASG AAVVSAMSQF GSASQSNTSP LQSMTSLCHQ QSFSDTNGGN NPISPLHSLL SNFSQDESSQ LLNLTRTNSA MTSSGWPSKR PAVDSTFQHS GAGNNNTQSV MEQLGQSHTS NVPPNAVSLP PFPGGGRECS IEQEGSASDP HSHLLFGVNI DSSSLLMPNG MSNLRSIGIE GGDSTTLPFT SSTFNNDFSG NLAMTTPSSC IDESGFLQSS ENLGSENQQS NTFVKVYKSG SFGRSLDITK FSSYHELRSE LARMFGLEGQ LEDPVRSGWQ LVFVDRENDV LLLGDDPWPE FVSSVWCIKI LSPQEVQQMG KRGLELLNSA PSSNNVDKLP SNNGNCDDFG NRSDPRNLGN GIASVGGSFN Y // ID V4L2S2_EUTSA Unreviewed; 365 AA. AC V4L2S2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ34028.1}; GN ORFNames=EUTSA_v10009849mg {ECO:0000313|EMBL:ESQ34028.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ34028.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ34028.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ34028.1; -; Genomic_DNA. DR RefSeq; XP_006415675.1; XM_006415612.1. DR GeneID; 18992236; -. DR KEGG; eus:EUTSA_v10009849mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 173 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 173 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 365 AA; 41705 MW; FABD2592CE6A08DC CRC64; MDNFLPFSSP NANSVQELSM DLNTNRSHFS TVPTYDHHQA HHHYHMLPPY PNIACPVDPT AVMNPQPLHS SEAFSRFPFT RTGSEFGSLV CNPGLRQERG GFLDPHMTKM ARINRKKAMI RSRNNYCPNS SSNELVDSRR QVALNMKNNS ETTAKKDLFR FSSFDNKKLR VLLVKHLKNS DVGSLGRIVL PKREAEGNLP ELSDKEGIMV EMRDVDSVQS WSFKYKFWSN NKSRMYVLEN TGEFVKKNGV ETGDSLTIYE DESKNLYFSI RKYSGKQNEG REDESMEVND MNFLEDLTFD YIPNDEEEDS IAMLIGNLND HYSIPNDLMD LTTDLDQATS SSPHLDHLSD GHATSDHVSS NDFVW // ID V4L3X3_EUTSA Unreviewed; 581 AA. AC V4L3X3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10029161mg {ECO:0000313|EMBL:ESQ38374.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ38374.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ38374.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517537; ESQ38374.1; -; Genomic_DNA. DR RefSeq; XP_006396921.1; XM_006396858.1. DR GeneID; 18014512; -. DR KEGG; eus:EUTSA_v10029161mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 462 543 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 581 AA; 65981 MW; BAEF3E7C80348603 CRC64; MANNQVMDAE YEFPVESYLY DELWKLSAGP LFDLPKFGEK VYYFPQGHIE HVEAHTKDEL SQLRPIFDIP SKIGCNVMDI QLKVENETDE IFAKIALLPD TAEVEIPISN VNHERRKVSS FIKVLTASDT STHGGLSVIK RHAVECLPPL DMSQPTPSQE IVAKDLHGCE WRFKHVFRGS PLRHIFTTGW SAFATSKRLV TGDSFIFLRG ENGESRVGIR RAVHQQRSIP LSIISKEIMH HGITASTMNA INTKSMFIVY CKPRFTMQFE DYDFTIIRYS GTVIGKKDLC SHWQDSEWRC LEVQWDEPAL IPRPNKVSPW EIEHMGSLSN VHQSALLKNK RSNLWNPTLT QGQEIGQSST NFLMTVPQLS YCDATDDSKI PSGLAISYSV PTMSKTNYNN QMVMSMKEKM TTAATTANNR LFGVDLTSPK EIEDPMRQTE ENNCDQIRTQ TSPKEIQSKS TRSRTKVQMQ GVAIGRAVDL TILDGYNQLI DELEKLFDLK DELRTRNQWE IIFTDDEGDM MLVGDDPWPE FCNMVKKMFI CSKEEVKIMK SGKKFLEGDS ALTAAMLTCS DVTPDVKTAN N // ID V4L4F2_EUTSA Unreviewed; 436 AA. AC V4L4F2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ38509.1}; GN ORFNames=EUTSA_v10029137mg {ECO:0000313|EMBL:ESQ38509.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ38509.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ38509.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517537; ESQ38509.1; -; Genomic_DNA. DR RefSeq; XP_006397056.1; XM_006396993.1. DR GeneID; 18014851; -. DR KEGG; eus:EUTSA_v10029137mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 82 176 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 219 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 341 436 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 82 176 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 219 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 341 436 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 436 AA; 50111 MW; 56049254BB9B0DF0 CRC64; MAKSKLLHPQ SFHTLVPSNN NDDEELPRKK KLKKNRLDEK VSNEEEEDME SLMEVEKKKK QSPKPKRRAV SYASYSPCHK RLVTFTLPSD YVKISSLTLP KPFLRENGIN KPEKKIYLLG KDGTKWPTSL LKDNKGIMSL GSGWKDFVKA NGLETGFTLK LMWEGTTPSF SLWSSESASD VEEEEEFSKD PSKIEKMRQD ENKKEERQRD STPSSQKQFV TITITPDNLR KNRLRFPKQF VKENSMNKPG MIYLLRKDGT KWMVNLVQER DGRMSLGSGW RVFAEANDLK PGESFTLEAF FEDTTPMVRF IRTECNNSEA SKKESVSKED TETRNRNTEQ FVTLTLIPDD VRACKLHLPS QFMKANGINR LGKITLLGEN KMEWPAYLLS TRDGTVALEY GWDGFCEANG VKLGEDFTLE FIYEQGTVTV LRFCSK // ID V4L5Z1_EUTSA Unreviewed; 284 AA. AC V4L5Z1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ39049.1}; GN ORFNames=EUTSA_v10001785mg {ECO:0000313|EMBL:ESQ39049.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ39049.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ39049.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517481; ESQ39049.1; -; Genomic_DNA. DR RefSeq; XP_006397596.1; XM_006397533.1. DR GeneID; 18015731; -. DR KEGG; eus:EUTSA_v10001785mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 190 283 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 190 283 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 154 180 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 284 AA; 32437 MW; D08911825C35C562 CRC64; MGRNRAFGKI QEDRKKTSFF KILADEDLSS EAMRFNPQKF WRGSVCKNIP HKVILKVVWG RSWKVKLSKF MGSYLMEKNG WEKFLYDNKL GDREFLTFTN EGNNCLTVNI FEKNCKEILQ PQRTTTTVIA SSSSKDVKKE EMSCVIAEST GRGAKRKNKR AEEEEERKKS KKMKKKAGNN VYGASSSSSA ATFSLTIKQS HLLVLIIPND FAKMHMPKKT AKLIIHDPKG KSWKVVYFCS NKTKIFSSGW RILARDYGLA VGDVCTFRLI KPKEMVLQVS HASP // ID V4L6Y3_EUTSA Unreviewed; 340 AA. AC V4L6Y3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ35493.1}; GN ORFNames=EUTSA_v10010019mg {ECO:0000313|EMBL:ESQ35493.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ35493.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ35493.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ35493.1; -; Genomic_DNA. DR RefSeq; XP_006417140.1; XM_006417077.1. DR GeneID; 18993543; -. DR KEGG; eus:EUTSA_v10010019mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 111 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 184 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 111 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 184 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 38217 MW; 52180186A6C18EF0 CRC64; MEVSSVDEST TSTGSICETP AKKSSVNLYR MGSGSSVVLD SENGVEAESR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAVHR FRGRDAVTNF KDARLDDGEI DFLNSHSKSE IVDMLRKHTY KEELEQSKRR RNGNGNTVRT SMTAALDNDD GVSTMEFRSA EPLFEKAVTP SDVGKLNRLV IPKHHAEKHF PLPSSNVSVK GVLLNFEDVT GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLRAGDVVSF SRSDGQDQQL YIGWKSRSGS DSETGRVLRL FGVNISPESS RNDVVGSKRV NDTEMLSLVC SKKQRIFHAS // ID V4L7W8_EUTSA Unreviewed; 607 AA. AC V4L7W8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46460.1}; GN ORFNames=EUTSA_v10000097mg {ECO:0000313|EMBL:ESQ46460.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46460.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46460.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46460.1; -; Genomic_DNA. DR RefSeq; XP_006405007.1; XM_006404944.1. DR GeneID; 18022322; -. DR KEGG; eus:EUTSA_v10000097mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 178 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 347 442 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 504 599 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 178 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 347 442 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 504 599 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 607 AA; 68533 MW; 654AB84602F24010 CRC64; MAKPTLLLHP QFFHTLVPGF NTHLTIPLEF FSKYIEGKTS VEKTTAELKS DSSDITWKVK MTGRRLSDGW EEFAVANNFR TGDVVVVRYE GDMVFHVSDL GSSCCEIQDI PPLSNNSYGQ DDIGKNLLKK RLHPRTQVVF SSNDVDDEDN LEIPVKKKAK KNSPEAEEVS SSSSDDSCFV AMVTPSSLRT DKLYLPQYVT NSSGITRKCR KIVLTDGEER SWALDLRFSK SSDSFYISRG WRKFCEENGR EAESFFMFKL VRNGETPVLG FCPSESCNDK RQRNCSEASG RESFSTEISS GEENIEGESS EDDCSSMESL METKEKKCSL KRRILSCSSY SPRYKRFVTF TLPPDYDRIR RLCLPRSFLR ENGINKTGEI YLLGKDGKKW LTNLQRDKNG TMKMEMGLKD FVKANGLKMS ESFTLELIWE DTTPMLSLCP AECSIDRGAG GECSETDQEN SLSIEPSSYE KISKDENKSV STKPRSRDSS SAIQNRFAEL TLTPEDVRAC KLVSSSSNLH LPRQFMKANG IGKLGKITML GKEGTKCSAF LLSRDGFVAL GIDWKWFCEA NGVRTGESFT LEFISEQTKT TYVLKFCSRE TNKYKIC // ID V4LAF6_EUTSA Unreviewed; 503 AA. AC V4LAF6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47410.1}; GN ORFNames=EUTSA_v10028050mg {ECO:0000313|EMBL:ESQ47410.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47410.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47410.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517416; ESQ47410.1; -; Genomic_DNA. DR RefSeq; XP_006405957.1; XM_006405894.1. DR GeneID; 18022879; -. DR KEGG; eus:EUTSA_v10028050mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 365 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 415 503 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 415 503 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 503 AA; 56990 MW; 2273FD88F84DED05 CRC64; MVNKHFFKPI LPGFHSHLTI PVAFFSKYIQ GTNEQKMTTA KLRSDVSKTA WKVKIEEDGQ KLTDGWKQFA LAHDLRTGDI LIFRHEKGMS FHVEILGPSG CEVQYESCSD DKSSLVKKNP RKETKSSSLV DHSRFVANVA PSTLSDDALN IPMSFARANG LGTRCGEIVL MNEKGRSWNL ALKQKKCGKI YIRGGWRSFC SANGLNVGDL FTFNLFQRGK TPVLRLSTTE SGEEEESSEE KTQRKKKVEK NPKTEAGSSS SSLDPSCFVA KISPATLRYD SLRLPVKFWR ENGLNRRCGE IVLMNEKGTS WTLNLKQKRS SCGTMFIRRG WRSFCRANGL RAGDSITFKL IQRGGNLFLR LTSTESKEEC SEGDEIESLS TESESDHEEM DQDEKSFKNP RSLWKASSSA SQNLFLTLTL KPYNLTKSNL YLPVTFTKFH GINEETKMHL LDKHGVKWYT NLRSAEKGKK IRLVGGWKDF FKANCLIWEG DTRCVLQFCS KVK // ID V4LAH6_EUTSA Unreviewed; 286 AA. AC V4LAH6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47430.1}; GN ORFNames=EUTSA_v10028136mg {ECO:0000313|EMBL:ESQ47430.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47430.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47430.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517416; ESQ47430.1; -; Genomic_DNA. DR RefSeq; XP_006405977.1; XM_006405914.1. DR GeneID; 18022898; -. DR KEGG; eus:EUTSA_v10028136mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 61 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 133 173 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 61 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 133 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 250 277 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 286 AA; 32710 MW; 2142CA96218E085A CRC64; MKLKLTSDAS DRTWEVKLIN GQRFSHGWED FSNAHCLRDD HVLVFRHDGD MLFHVTPTGR SFSQKKQQCV SSSEEDDNDD DEGMKQSRFL TVTLKPYMLT YKQIRVRRRF AIENGMKEAG KITLVDKHGD QGFYISKGWI GFCAANELKA GDTFKFEFVG GEGKTPMLKF CWTVQASRDK DKDGQEDNET RVLKRARVST EEGSSRCTQA SNKSRAEPEN LQRKPPLQSC SVSEQLAKVK QSIVYTLTGI RQFRSELEIK EQNLEASLKE LDVLGEKVLE INKILK // ID V4LBS4_EUTSA Unreviewed; 131 AA. AC V4LBS4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47895.1}; GN ORFNames=EUTSA_v10022043mg {ECO:0000313|EMBL:ESQ47895.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47895.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47895.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517408; ESQ47895.1; -; Genomic_DNA. DR RefSeq; XP_006406442.1; XM_006406379.1. DR GeneID; 18025230; -. DR KEGG; eus:EUTSA_v10022043mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 131 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 131 AA; 15009 MW; 572DBBFA3243F54D CRC64; MAQDQEHNQD EELNLELGLA LYDPWVIKKT LYDSDVSQQG RLNLPRQDFE DFIIPEMAGD LVQNLGNGVK VKALVVDEEE HIVTFKRKSN GSYILCAGWS AIVKANNFQT NDLIGFCWVN SSDRFYLQRI N // ID V4LDE5_EUTSA Unreviewed; 341 AA. AC V4LDE5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ37803.1}; GN ORFNames=EUTSA_v10028783mg {ECO:0000313|EMBL:ESQ37803.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ37803.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ37803.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517537; ESQ37803.1; -; Genomic_DNA. DR RefSeq; XP_006396350.1; XM_006396287.1. DR GeneID; 18015152; -. DR KEGG; eus:EUTSA_v10028783mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 140 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 140 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 38749 MW; DA637314C4C536F3 CRC64; MSNSDQELAE IGANGSGNNN NNFNLAFREH MFDKVLTPSD VGKLNRLVIP KQHAENYFPL ANNQNGTVLD FEDRNGKTWR FRYSYWNSSQ SYVMTKGWSR FVKDKNLENG DAVSFHRAYV PDDNEPENRR KLLFIDWRHR ADTNLVHNIT HPIFGSPTYP TASYFPVTEY SMSRYRSFPP LYHNRFQERE VLEYGYGRVV NGGRYYAGTP LDHHHHQWNL GRSEPSLVYD SHPVYPASRV TSSSSSAMLP PFTPSQPPPP EGTVKKVRLF GVDVEESSSS GETRGEMGVV AGYSSSSPVV IRDDDESTWR SPRGEMGASS SSVLQLSDDE DYKRKGKSLQ L // ID V4LDS2_EUTSA Unreviewed; 411 AA. AC V4LDS2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ37943.1}; GN ORFNames=EUTSA_v10028696mg {ECO:0000313|EMBL:ESQ37943.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ37943.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ37943.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517537; ESQ37943.1; -; Genomic_DNA. DR RefSeq; XP_006396490.1; XM_006396427.1. DR GeneID; 18014985; -. DR KEGG; eus:EUTSA_v10028696mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 411 AA; 47229 MW; 1F89B5DCC3F723E9 CRC64; MDATDTPPRF FKVFISHFSS DSMLIPISYY DELPRLLPET AILQGTGGCS WNVAMNLKEE EVCFEQGWPE FVKDNSLIDG DFLTFVYNGD SVFEVSIYGL HGCKENRAVT EVEEDDKEDS TCFLSSDDTN TSSESEMATA IPRSKNKGKE EDSDDSDDSV HSLNSEDTET ETEKNKGKPK EKVMEEDIDF SLDSEETETE GSEFKNVNTI RRSKNKGKKK VEVVESSDED TDSDYIEAFS RLDFEENSNS DSSYSPDCED TSAHVKPKVT NPKKKGKSIV STGESSHRVE PSKRREKVKR KIKNPEVYLD DPNNVHFETG VKNRKYELLV HAQLVKDYCL RFQEYISYID PKGKLEAKTA RWRDQRVCIK RWKRICDRNK LKKNDRIVCE ILRNQDLVYA IKVHIVRGIY L // ID V4LEI4_EUTSA Unreviewed; 276 AA. AC V4LEI4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ48885.1}; GN ORFNames=EUTSA_v10021305mg {ECO:0000313|EMBL:ESQ48885.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ48885.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ48885.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517408; ESQ48885.1; -; Genomic_DNA. DR RefSeq; XP_006407432.1; XM_006407369.1. DR GeneID; 18023257; -. DR KEGG; eus:EUTSA_v10021305mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 276 AA; 31298 MW; 8D8C3AD7234A98B6 CRC64; MSVNYYSRDI IHHNTLSLHH HQNDAVAQRE SLFEKSLTPS DVGKLNRLVI PKQHAEKYFP LNNGGGGDDV AAETTEKGML LSFEDESGKC WKFRYSYWNS SQSYVLTKGW SRYVKDKHLD AGDVVFFQRH RFDLHRLFIG WRRRGEASSS SAVSAVSQEA RVNTTAYWSG LTTPYHQVHA STTYPNIHHE YSHYGAVAES PTVVAGSSRT VRLFGVNLEC HGDVVEPPPC PDGYNGQHIY YYSTPNPMVV FRWSYCGVKF RSIAKLRLSN QSNGAN // ID V4LFY9_EUTSA Unreviewed; 298 AA. AC V4LFY9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ42629.1}; GN ORFNames=EUTSA_v10014229mg {ECO:0000313|EMBL:ESQ42629.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ42629.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ42629.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ42629.1; -; Genomic_DNA. DR RefSeq; XP_006401176.1; XM_006401113.1. DR GeneID; 18016451; -. DR KEGG; eus:EUTSA_v10014229mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 298 AA; 34032 MW; 14BFF103C1234F56 CRC64; MVFSPYPDFG FTFNSQDLSL SQRLVIPSDY RMYYPNPLPQ TAVLRKPEGN FWNVKWTISQ EGTISFEDGW SKFVTDNGPI HGDILLFSYD GCRNFFVRIY RNGLVVETKS PIKIQEISDD DDERNSSDDD DDDHDMENEE DSNDENKIIS LSLGSSDEDD DDDDDDDTTL AEVNKSNGSS KKGGTSQKKR AESIGDPAMY LDDPTNPCFI PISSYRRMMV IAQQVIKDHD LKFGETINLI DGFGQVEGKV VEWKDRIVVY SWDEVCKRNH AKLEDVIICE ILHERGLVQS IKAHFVKK // ID V4LHN4_EUTSA Unreviewed; 598 AA. AC V4LHN4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10001365mg {ECO:0000313|EMBL:ESQ39298.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ39298.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ39298.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517481; ESQ39298.1; -; Genomic_DNA. DR RefSeq; XP_006397845.1; XM_006397782.1. DR GeneID; 18015527; -. DR KEGG; eus:EUTSA_v10001365mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 487 579 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 598 AA; 67078 MW; 67EEC17AB82D53EF CRC64; MANVDVDFRR SGSYDDQLYM ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVALTNQGVV DQEIPDFNLP PKILCRVLSV MLKAEHETDE VYAQITLQPE EDQSEPTSLD PPLVEPAKQS VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMRQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF LRGQTGDLRV GVRRLARQQS TMPASVISSQ SMHLGVLATA SHAVNTKTLF VVFYKPRISQ FIIGVNKYMA AMKIGFPIGM RFRMRFEGEE SPERIFTGTI VGTGDLSSQW PASKWRSLQI QWDEPSTVQR PNKVSTWEIE PFSPSVLTPT PTQPQSKSKR SRPINSSSVS EITGSPIAST FLSLDSNSSL RLLFQDPSTE RNSNKPVFPS GLQCKKTETP VTSCCRLFGF DLMSKPASTA PVPPDKLLIS VDSNNSGSAK CQDPNSLTEQ KQQTSTRSRT KVQKQGTAVG RAVDLTLLRS YDELINELEK MFEIDGELSP KDKWAIVFTD DEGDMMLVGD DPWNEFCKMA KKLFIYSTDE VKKMSTKSSL DDEGTIVNLE LDQRTVYL // ID V4LKG0_EUTSA Unreviewed; 323 AA. AC V4LKG0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ50990.1}; GN ORFNames=EUTSA_v10022780mg {ECO:0000313|EMBL:ESQ50990.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ50990.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ50990.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517392; ESQ50990.1; -; Genomic_DNA. DR RefSeq; XP_006409537.1; XM_006409474.1. DR GeneID; 18025867; -. DR KEGG; eus:EUTSA_v10022780mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 222 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 222 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 323 AA; 36977 MW; 831B0FBE693D4090 CRC64; MATNPDFLMC KEERKNESFF KVLQGADIYS ENMNVSGKFE SFWFIVKMGL RKLNLSVQRV LKKEQFLMIF MRSVSEHELS GKMKIRAEWG SSWDIGISKN PRFYFMEKSG WEKFVRENYL EEDNFLTFTH KGNMGFNKDG LEIISPPQSM AFFASSSQVK REGGEVVSPD LGPTATETNR EGKFKRKVNS GKKKIKESES SPLIKEAFSA RRDCAGASSS SSAEFTVFIK GSHLKILKIS VSASRNLLPK ERTTFKIHHP DMKKSWNVVY IPRHEQGLSG YFSSGWRILV QEYPVLVGEA CKFTFLKPTE LLLIVSKRAK ETH // ID V4LN25_EUTSA Unreviewed; 300 AA. AC V4LN25; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ43877.1}; GN ORFNames=EUTSA_v10006123mg {ECO:0000313|EMBL:ESQ43877.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ43877.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ43877.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517455; ESQ43877.1; -; Genomic_DNA. DR RefSeq; XP_006402424.1; XM_006402361.1. DR GeneID; 18019852; -. DR KEGG; eus:EUTSA_v10006123mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 300 AA; 33876 MW; C5F7B082C386DE2A CRC64; MNPEEEKPVE EASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NSSTNDNNKG LLLNFEDRTG NSWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFQ RDPGNKDKLY IDWRRRPKIP DHHHQFAGAM FPRIYSFPHP QMPTNYESHN LYHRFQRDLG IGYYVRSMER SHPTAVIESV PVMMQRRSQV AAMASSRGEK RLRLFGVDME CGGGGGGGAS VNSTEEESSS SGGSMPCGSV SMAGAGSLLQ LRLVTSDDES LVAMEAASVD EDHNLFTKKG KSSLSFDLDR // ID V4LNE7_EUTSA Unreviewed; 297 AA. AC V4LNE7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ41378.1}; GN ORFNames=EUTSA_v10015617mg {ECO:0000313|EMBL:ESQ41378.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ41378.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ41378.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ41378.1; -; Genomic_DNA. DR RefSeq; XP_006399925.1; XM_006399862.1. DR GeneID; 18017177; -. DR KEGG; eus:EUTSA_v10015617mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 34753 MW; 8C1B174CC5C350F7 CRC64; MARNSGFCRI KNERKKLSFF KIFQSADLSS ECMRAIPYNF MQRVSEKDFS YKMVIRAQWG SSWKVEISKN PRFYYMEKHG WNQFVSDNAL GDNEFVTFTH KGKMWFDVNI YHQNGKEILI PRNTPTMAPS GIKKEQGESS YKDVKKEDET GDSTGGEDLE VRKKKAKESK TSKKKKLTSK KVKNKIRSKK DKNGVPKFKI TIRKSYLKFL AIPKRFVEGH IPNKSTIFTI HHWKGNCSWE VLCLVRENRT IFSSGWTKLA REYPLLIGDR CIFKLIKPTE LLLISKKARE KIIKIDE // ID V4LRK3_EUTSA Unreviewed; 549 AA. AC V4LRK3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46459.1}; GN ORFNames=EUTSA_v10000111mg {ECO:0000313|EMBL:ESQ46459.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46459.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46459.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46459.1; -; Genomic_DNA. DR RefSeq; XP_006405006.1; XM_006404943.1. DR GeneID; 18022321; -. DR KEGG; eus:EUTSA_v10000111mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 140 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 290 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 447 543 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 140 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 290 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 447 543 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 549 AA; 62704 MW; D52D0235167C0D63 CRC64; MANKHFFKPL LPGFHSHLTI PVAFFLKYIK GTNEQKKTTA KLRSDASDIT WEVKIEDGQK LTDGWKEFVL AHDLRVGDIA IFRQEKDMAF HVTLMGPSCC EIQYESGLDD ENNLGKIPKK TKVKKNPRKE TESSSLDPSC FVAHVTHASL RYDSLNLPMS FARANGLNTR CGEIVLMNDK GRSWTLALKQ KKCGSTYIRR GWRTFCSANG FKAGEAFTFK LIQRGKVPVL RLSTTESEEE EESSGADEVE SLSTEPESDE ESNLAEIQRR KKLKKNPERE TESYPLDPSY FVAKVSPSTL RQDRLYLPRN FSRENGLDTR CGEIVLMNEM GRSWTLNLKR KNSCGTAYIR RGWRSFCRAN GLRAGDSITF KLIQRGGTLV LRLSPTDSEE EEEEEEEEEE EESSEGDEIE SLSTEQESDE EGNQDEKSFK KPRLLWKASS TPSQNRFVTL TLKPFNLTKY VMLLPIPFTR MHGINEETKM SLVDKHGVRW STNLRSEITG DRIRMVGGWQ EFFKANCVKI GESVMLKLIW EGDKSCVLKF CSKLKQVTK // ID V4LRL3_EUTSA Unreviewed; 515 AA. AC V4LRL3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46469.1}; GN ORFNames=EUTSA_v10000130mg {ECO:0000313|EMBL:ESQ46469.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46469.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46469.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46469.1; -; Genomic_DNA. DR RefSeq; XP_006405016.1; XM_006404953.1. DR GeneID; 18022331; -. DR KEGG; eus:EUTSA_v10000130mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 280 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 418 514 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 280 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 418 514 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 515 AA; 59006 MW; F3154D6CA3DA830A CRC64; MANPPLYSPI KPHFFQPLLP GFTNHLDIPV AFFLKHLEGS NKGKTAKLRS DASEITWKVK IDGRRLSVGW EDFAVAHDLR IGDIVVFRHE GDLLFHVTAL GPSCCEIQYG EYSNDEEENM EKKICDTEKV SRKKKKSPKT ETDDATDQSC FEVTVTASNL KRDVVYLPKT FAEVNGLIKK SEIVLMNEEG ESWKIDLRHE DYSGRFYMSR GWRSFCVANG KKPGDDFTFK LVQNEETPVI QMLPLNTEDL HKLDSTMDAE KVPKKKCQKT EADSSPDHSC FVAIVTASNL ERDTVYLPKK FAVSNGLLKK REIDLVNEKG KSWRIDLRHV AYPGRFCMRR GWRSFCIANE KKPGDSFKFK LVQNGETPML QMFPLNMHKL EPSNDTREGL EATSDVIRQG KRSKAIKTTI TEEHSTTSQN RFVTLTFTPA NRLNFPLQFT KENGIKKAGR ITMLDRYGTR WKTSLLMNKN QRGTMSLGRN WKGFCEINGV KMDESFVLEL VWEERVPILK FCSKS // ID V4LSW1_EUTSA Unreviewed; 306 AA. AC V4LSW1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ53685.1}; GN ORFNames=EUTSA_v10025812mg {ECO:0000313|EMBL:ESQ53685.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ53685.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ53685.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ53685.1; -; Genomic_DNA. DR RefSeq; XP_006412232.1; XM_006412169.1. DR GeneID; 18029519; -. DR KEGG; eus:EUTSA_v10025812mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 47 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 47 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 35145 MW; AAF4BCB9FC8CA4F4 CRC64; MKRKQDEVYF EQGWVKFVKD NSLSDGDFLT FVYNGDRIFE VSIYGPDGCK EVRAVTEADD DEEDSSNDTD AISESEVANT IPRTKNKGKS KVEVVEEESD DDEEDSIYAD TETETGSKFK MAKTIPRSIN KGKMKEEVVE GADEDSDSDY NEAFGGLDFE ENFNSDSSYA PDSEDTATYV EPKVKNLKKK VKPKIKNPEA YLDNPRNVYF ETGVKKRRFE LLVHAQLVKD YSLKFEKNIY FIDNHNAGKL LAETAVWNDE RVCIKGWQHI CERNQVKKED GILCELFRKR ELVYAIKVHI IKAKDL // ID V4LTV4_EUTSA Unreviewed; 322 AA. AC V4LTV4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ54025.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10027563mg {ECO:0000313|EMBL:ESQ54025.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54025.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54025.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54025.1; -; Genomic_DNA. DR RefSeq; XP_006412572.1; XM_006412509.1. DR GeneID; 18030220; -. DR KEGG; eus:EUTSA_v10027563mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 117 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 319 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 117 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 319 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESQ54025.1}. SQ SEQUENCE 322 AA; 36905 MW; AAB8E06AC4729287 CRC64; LFFQASTTTS YLTSLNIPLK FFSKHIQGRN ERNTAEVRSD ACKNTWKVKM EGRRLTDGWK EFTIAHDLRI GDIVIFRHEG DLVFHVTCFG PSCTEIQYDV QPQDNIGNLS EKQNLKTERE SFSSDQSCFV ARFLPRKFVR PDGLKKSSNK ISLINEGART WTLILKFRES SRTFYMRSGW RSFCGENGLK PGDSVTFKLE GNSTGRPRLS FSSSESNESR FVTLSVTPAS IKHRRLYLPK SFTRNNGMEN AEGKVLLLDK HGVEWPVNLV LSKRDRRMRL GSGLKEFLKA IDVTAYKSFV LELVWEDTTT PPMLKFCSKV KT // ID V4LVC9_EUTSA Unreviewed; 392 AA. AC V4LVC9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46457.1}; GN ORFNames=EUTSA_v10000515mg {ECO:0000313|EMBL:ESQ46457.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46457.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46457.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46457.1; -; Genomic_DNA. DR RefSeq; XP_006405004.1; XM_006404941.1. DR GeneID; 18022319; -. DR KEGG; eus:EUTSA_v10000515mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 3 97 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 137 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 290 387 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 3 97 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 137 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 290 387 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 392 AA; 45108 MW; E90DE9C1437A48C7 CRC64; MAKRHFFQPL LPDFHSHLTI PVAFFSKYIK GKNEHKTTAK LRSDASEITW RVKVEDGRRL TDGWKEFALA HDFRIGDIVI FRQEKDMTFH VTPFGPSCCE IQYESCLDDE NKLEKIPKKK KRVKREAESS SSLNPSCFVA NVTHASLRYD SLSLPMSFAR ANGLNTRCGE IVLMNDKGRS WTLALKQKKC GTTYIRRGWR TFCSANGYKA GDFFTLKLIQ RGKNLVLRLS LNESEEEEED DCSLEANDIE PQSDEESNQD ERSSQKCSER KHRTGKSTWK ASPSPSQNRF VTLTLRPWVV KNSILFLPMP FTRMNGITEK TKMTLLDKND VKWPTGLRSG DQGKRIRLVK GWREFFKANN VKIGESVMLK LIWEGDANCV LKFCSKVKQV TK // ID V4LVD4_EUTSA Unreviewed; 1486 AA. AC V4LVD4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46462.1}; GN ORFNames=EUTSA_v10000010mg {ECO:0000313|EMBL:ESQ46462.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46462.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46462.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46462.1; -; Genomic_DNA. DR RefSeq; XP_006405009.1; XM_006404946.1. DR GeneID; 18022324; -. DR KEGG; eus:EUTSA_v10000010mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 8. DR Gene3D; 2.40.330.10; -; 9. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 8. DR SMART; SM01019; B3; 8. DR SUPFAM; SSF101936; SSF101936; 8. DR PROSITE; PS50863; B3; 8. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 68 164 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 202 297 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 363 459 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 652 747 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 813 908 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1088 1187 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1229 1324 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1384 1478 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 68 164 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 202 297 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 363 459 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 652 747 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 813 908 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1088 1187 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1229 1324 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 1384 1478 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1486 AA; 167775 MW; FFC2521CED3642B1 CRC64; MVLHLSDLGP SSNNDQDKMG YISMKKHQHP RSEDYGGDDD NTELARKKKA KMNKSEAEAD SSSSDHSCFV ALVTASNLHT DALYLPKDFT SSNVLKRECR KIVLTDGGER SWALDLRFNK SCDSFYITRG WRSFCEENGR KEGGFFVFKL VGNSETPFLS FCSTESFNDG TNKNSKESCM ELERKKNHLR CIDSTSPIEN RFVTLTLPQC SLRDSRIFIP LPFLRENDLD KPRLITLLGK DGTKQVADLR RDGSGRMRLT KGWREFAKAN GLKAGESFTL ESIWKDKTPM LRLVHTDSSS DGRQQRQCYS KASEKESVST ESRREKASKK VSPLSSGKQI SKEERKKNHL RFRDSPSPSQ NPFVTLTVTH DSLRNCRLHL PLSFMRKNGL DKSGMITLLG KDGTKWPANL LRENATGRMS LGKGWKDFAI ANSVKAGESF TLKSLWKDKT PMLSLVHTDS SSDGRQQGQC YSKASEKESV STEPSGENKT QGAKNNREEK RHSSSGIGNQ FVTLTLKPED VRDCKLNKSW ASYEVRRIQR FPHRSRTHCR LKIVRCDAHD LRIRKVVVFL RHGRRYDVPE FTRKKKTKKN NPETEAFSTS DHSCFEAHVS ATNCLDFRLQ DSTSSDAIRK KCDKKYSSRR MVKSYESSEK RFVTFTLAPV DVRHCRLRLP MQFSRENGIN KPGKIYLLGN DGSKWLANLL LESRGRMTVG DGWKSFVKAN GLKIGESYTL ELKWEDTTPV LCLCPEEYSM YRGAGGCSEA SEKESLLIQP SSGNEIMTIE NIDENRKEES SSWEKEKNHL RRSDSTSTSQ NRFLTLTITP DSLRHGRLRI PLQFMRENRM NTPGDITLLG KDGAKWLVSL LLERRGRMSL GKGWKDFAKA NGLKTGDSIT LESIWEDATP VLSLLRIEPN SDGRQQGEYS IAREKETIFT ELSSGESRKY PLGRLDSSLA IQSTVSPEIG VSHHLRIGEI AVFRHEGDMM FQVSDFGPSC CEIRDVLTPI RNHYQENIEL PRKKKVKLNN PGTEAVFSSD RSCFVAHVTA SNLHTNALPL PQEPLPQDFS SSDGHNRKCP KNSPTQIISS YSSNEKHLAT FTLAPVNVRN CRLRLPMQFT RENGINKPGK IYLLGKDGSK WLANLLQESR GRMTLGDGWK SFVTANGLKT EYSIDSREEG GCPEAREKEP LPIKPSSGKE ISISYNNEDE NSKEESTSWE REKNQLISSN SSSPSQNRFL TLTITPDSLR HGRLRLPLQF MRENSMNTPG DITLLGKDGA KWLVSLLLER RGRMSLGKGW KDFAKANGLK TGDSITLESI WEDATPVLSL LRIEASNDRG QSEFSKLSLS TGRSSGNKTR KAENNREGSS SGEFEKSKDL LRRVHSSLAI QNRIVMLTLT PEDVRDCKLH LPSQFMRTNG ITKPGKITML GRSGMKWFAY LLSNDGAVAL GNGWKGFCEA NGVMVGESYI LEYIPREDTD HVFKFCSNFG DQIHNW // ID V4LW15_EUTSA Unreviewed; 208 AA. AC V4LW15; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47999.1}; GN ORFNames=EUTSA_v10021527mg {ECO:0000313|EMBL:ESQ47999.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47999.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47999.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517408; ESQ47999.1; -; Genomic_DNA. DR RefSeq; XP_006406546.1; XM_006406483.1. DR GeneID; 18023092; -. DR KEGG; eus:EUTSA_v10021527mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 208 AA; 23596 MW; ABD42CDB11425083 CRC64; MVTTRGTQAR VTAVSHRRPP TKPESPVKNF FKVVLPSTMK SNMMRIPTRF VKLQGSKLSE VVTLESPVGF KRSIKLKRIG EEIWFQEGWS EFAEAHSISE GHFLIFKYKG NSSFLVTIFD VSACEIDYPL DEVHISDSDD EVVDITDAEF LPTQGTGGDD QSVKGGASED KRKNRPRDNE FEKILNDVDG INPIVLEEEE EEKRVFRE // ID V4LWD5_EUTSA Unreviewed; 259 AA. AC V4LWD5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ48124.1}; GN ORFNames=EUTSA_v10021356mg {ECO:0000313|EMBL:ESQ48124.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ48124.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ48124.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517408; ESQ48124.1; -; Genomic_DNA. DR RefSeq; XP_006406671.1; XM_006406608.1. DR GeneID; 18024670; -. DR KEGG; eus:EUTSA_v10021356mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 222 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 222 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 259 AA; 29981 MW; 7A2DB9908A798452 CRC64; MLPKSENQSK PSFSKSLSLG QNWKSKSMRM IPEEFVRSIK HRLVFSVHWG NSWQLWLQGD KKGLFMVKED WDEFVDDNLL GPDDTLLFTH QDTMHFQVRI FKKDGKEINS VPLEVETGTE PFHPKPRNSL QEATPGKRRP GRAGKNCSDV ENLKRYLVNP QNPFFKKTLT KTNHILYVSS WVIEKYGLEF APHNSEMYFH LPHGTKHKGF TKFYGRSHGF NGWEEVSERY NLKVGDSVVC ELELSGGVVA AVRVHFLNE // ID V4LZ34_EUTSA Unreviewed; 270 AA. AC V4LZ34; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ45158.1}; GN ORFNames=EUTSA_v10010633mg {ECO:0000313|EMBL:ESQ45158.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ45158.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ45158.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517435; ESQ45158.1; -; Genomic_DNA. DR RefSeq; XP_006403705.1; XM_006403642.1. DR GeneID; 18021603; -. DR KEGG; eus:EUTSA_v10010633mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 270 AA; 31114 MW; 1E499A2869B4D9ED CRC64; MSETEDDAVL PRFFKVFLSE TSSESMRIPV SFNEHLEDPL PRTAKLHGTG GGIWTVGFTK RRKRVYFTDG WSKFAEDHDL KDGEFLTFVY DGYHTFEVSV YDGLGCKETR AVTEAVELSD ADSDSDEEEE EDPSVKGEDD SSYAEDEEVS QSNYTVDSEG TESDSSDISD LVVTTNPWFK TNLKNRTYEL LIPAKLAREY RLKFGESITY IDEEGTMVGI RVRWSDDRIC FKGWDRICRR NRLNKQDQVI CEMLHNRKLV HTIKIHIKRG // ID V4M0A5_EUTSA Unreviewed; 321 AA. AC V4M0A5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ48232.1}; GN ORFNames=EUTSA_v10022138mg {ECO:0000313|EMBL:ESQ48232.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ48232.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ48232.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517408; ESQ48232.1; -; Genomic_DNA. DR RefSeq; XP_006406779.1; XM_006406716.1. DR GeneID; 18024448; -. DR KEGG; eus:EUTSA_v10022138mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 220 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 220 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 36694 MW; 8A344E8E8C26DF83 CRC64; MGRNRGFDRI KDERKDLSFF KIFQSADLSS ECMRAIPYNF MKGLSNKDFS YKMVIRAQWG SSWEVEVSKN PRFYYIEKPG WNQFVSDLAL GDNEFVTFTH KGKMCFNVNI YQQDGKELVM PPTMAPSSGI KKEQGESSHA DVKKEVETGE SMGGEELKVR KKKSEESKTY KKMKSKNVVN SVEIGESSRG VEHKVIKKNA EKAKTSKKRE ITSCKVKNGV PEFTITIRKS YLKFLSIPKR FGEEHIPNES MIFTIHHSKG SGSWRVLCLV REARTVFSSG WSKLAREYPL LVGDKCTLKL IKPTELLLIS KKARENISMI G // ID V4M2J6_EUTSA Unreviewed; 378 AA. AC V4M2J6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46463.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10000579mg {ECO:0000313|EMBL:ESQ46463.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46463.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46463.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46463.1; -; Genomic_DNA. DR RefSeq; XP_006405010.1; XM_006404947.1. DR GeneID; 18022325; -. DR KEGG; eus:EUTSA_v10000579mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 25 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 297 375 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 25 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 297 375 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESQ46463.1}. SQ SEQUENCE 378 AA; 42693 MW; 1302E0527158D3CE CRC64; LPRKKKVKMN SSETEADSPS SDHSCFVALV TASNLQDDAL YLPKEFTSSN GLTRRCRKIV LTDGGERSWT LDLRFNKSSD TFYITRGWRI FCDENGKKAG SFFMFKLMKN GETPLLSFCP AESRGEKASN KESLTIQPSS GKQISKEERK KNHLRCRDST SPIENRYVTL TATHDSLKKG RLFDHLHSYW LYSPFESFLN LPLQFIRDNG LDKPGMVTLL GKDGTRWLAN LRRETTGTMN LGKGWKDFAK ANNNKERVVQ KLARKSLFLQ NLSVETRPGQ EHYSGEKCKG AVAKQHLPSQ FMRDNGIDKL GKITLLGKEG MTCSAYLLSK DGFVALGIDW KGFCEANGVK IGESFTLEFI SEQYKTTYVL KFCSNCGD // ID V4M2K0_EUTSA Unreviewed; 281 AA. AC V4M2K0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46468.1}; GN ORFNames=EUTSA_v10000279mg {ECO:0000313|EMBL:ESQ46468.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46468.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46468.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46468.1; -; Genomic_DNA. DR RefSeq; XP_006405015.1; XM_006404952.1. DR GeneID; 18022330; -. DR KEGG; eus:EUTSA_v10000279mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 137 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 144 239 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 137 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 144 239 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 281 AA; 31389 MW; 5A639186D51A762D CRC64; MKKGETPLLS FWPSESINDG TQADENNRQG CRDLISPNQN RFVTLTLTND SLKSSRLYLP LQFLKENGMD KPGMVTLLGN DGTRRLANLL RESSGRMSLG KGLKDFTKAN GLKMGESFTL ELIWENATPV LRLLSAELRS QNRFVTLTLT HDSFKNSRLG LPLPFMRENG MNQPGTIALL GKDGTKWMAN LLRESQGRMS LGKGWKDFAR GNGLEIGESF TLESIWEDAT PMLRLSGTVS KSDRRLQGEH CCEASEKESV IRELNESNID ERSNSSSLVQ N // ID V4M4X8_EUTSA Unreviewed; 97 AA. AC V4M4X8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47353.1}; GN ORFNames=EUTSA_v10028002mg {ECO:0000313|EMBL:ESQ47353.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47353.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47353.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517416; ESQ47353.1; -; Genomic_DNA. DR RefSeq; XP_006405900.1; XM_006405837.1. DR GeneID; 18022745; -. DR KEGG; eus:EUTSA_v10028002mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 97 AA; 11327 MW; 7D7C6989F2548658 CRC64; MCLQKKRRIW NLCYLPKNIS RSNILTGRFD EIILMDKHGR KWTSGLYCRK SSGEVYITRV WRSFCEANGQ KVGCSFVFKL VSNRTSPLLI MTSEETT // ID V4M528_EUTSA Unreviewed; 367 AA. AC V4M528; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47403.1}; GN ORFNames=EUTSA_v10028330mg {ECO:0000313|EMBL:ESQ47403.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47403.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47403.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517416; ESQ47403.1; -; Genomic_DNA. DR RefSeq; XP_006405950.1; XM_006405887.1. DR GeneID; 18022873; -. DR KEGG; eus:EUTSA_v10028330mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 150 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 304 366 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 150 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 304 366 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 367 AA; 41647 MW; AF14DC53B58A900B CRC64; MVNKHFFKPI LPGFHSHLVL SVFLYDSCIA FFSKYIQGTN EQKMTTAKLR SDVSKIAWKV KIEEDGQKLT DGWKQFALAH DLRIGDILIF RHEKHMAFHV KILGPSGCEV QYESCLDDKS NLEKTQRKKK VEKNPKTEAG SSSSSLDPSC YVANISPATL RYDSLRLPVK ISRENGLDTR CGEIVLMNEK GTSWKLNLKQ KRSCESGTMY IRRGWRSFCS ANGLRAGDSI TFKLIQRGGN LVLRLSSTES EEACPEGDEI ESLSTKSEKS IWKASSSESQ NRLLTLTLKP YNLTKSNLET KMHLLDKNGV KWYTNLRSAE KGKQIRLVGG WKDFFKANCV KIDEPILLKL IWEGDTSCIL QFCSKVK // ID V4M6R9_EUTSA Unreviewed; 341 AA. AC V4M6R9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47998.1}; GN ORFNames=EUTSA_v10021075mg {ECO:0000313|EMBL:ESQ47998.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47998.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47998.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517408; ESQ47998.1; -; Genomic_DNA. DR RefSeq; XP_006406545.1; XM_006406482.1. DR GeneID; 18023089; -. DR KEGG; eus:EUTSA_v10021075mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 244 338 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 244 338 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 341 AA; 39223 MW; 37CF4BB1C5F8E994 CRC64; MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKAENKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIYPSSVY PSPLPDSTVP ANKGYSGSAI QSLFTGPVKA EEATPTPKVP KKRGRKKKNA DPEEINSSAP RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V // ID V4M958_EUTSA Unreviewed; 389 AA. AC V4M958; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ48928.1}; GN ORFNames=EUTSA_v10022336mg {ECO:0000313|EMBL:ESQ48928.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ48928.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ48928.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517408; ESQ48928.1; -; Genomic_DNA. DR RefSeq; XP_006407475.1; XM_006407412.1. DR GeneID; 18023392; -. DR KEGG; eus:EUTSA_v10022336mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 389 AA; 44295 MW; C19E66BCA8B8BF96 CRC64; MENATAFSPT NPHFFQPLLP GFHSHLNIPM AFFSKHLEGT TNLDNAVVKL RSDASDITWE VKMDGRRLTQ GWQNFATSHD LRVGDIVIFR HDGDLLFNVT SFGPSCCEIQ YDDDDVVQIA SVETDSDPDK YQHTREAGSS SDHSCFLARV TASNLSKDLL FLPMDFARSN GLMNRHCETI LLNEDGKPWT LFLKYTKKTQ SRAYIARGWR SFCRANEKRA NCLLTFKLVQ TEMGKDSQKS QTADSTQPLS LESLSHTLMQ SITSQVEFEK QTTLQFASID SKFSELIAVL KKGSDRKDEV LEFSNPNYSS QARQVRFPDS ATDNHHRSTD SSTGNTIINS REGMLKRIDL PVFDGADVYG WIALAERFFQ NWRLSRRCKA RNRLDQFGW // ID V4MA80_EUTSA Unreviewed; 616 AA. AC V4MA80; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10016394mg {ECO:0000313|EMBL:ESQ51992.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ51992.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ51992.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517385; ESQ51992.1; -; Genomic_DNA. DR RefSeq; XP_006410539.1; XM_006410476.1. DR GeneID; 18026574; -. DR KEGG; eus:EUTSA_v10016394mg; -. DR KO; K14486; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 161 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 161 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 616 AA; 67360 MW; 354A5BE9F8F3FE4E CRC64; MGGLIDLNVM ETEDETPSSA SGSLSPSSSS SASASASAFA VSGSSSSSSS SGVCLELWHA CAGPLISLPK RGSLVLYFPQ GHLEQAPDFS AAIYGLPPHV FCRILDVKLH AETATDEVYA QVSLLPESED IERKVREGMI DVDGGEEDYE VLKRSNTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQPRPSQE LLARDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG DDGKLRLGVR RASQIEGASA FSTQYNQNMN HNNFAEVAHA ISTNSVFSIY YNPKASWSNF IIPASKFLKI VDYPFCIGMR FKARVESEDA SERRSPGIIT GISDLDPIRW PGSKWRCLLV RWDDIEANGH QQRVSPWEIE PSGSISNSGS FVTTGPKRSR IGFSSGKPDI PVSEGIRATD FEESLRFQRV LQGQEIFPGF INTSSDGGAG ARRGRFKGTD FGDSYGFHKV LQGQETVPAY SMTDHHRQQG LSQRNIWCGP FQNFSTRILP PTSVHVSSSP SSVLITNSSG PNGHLEDHHG GSGRCRLFGF PLTDETTTVA PATVVPCVEG LNGHSMKGVS GVQSNHLHSQ GRDMYGMRDM LLDIAL // ID V4MAS3_EUTSA Unreviewed; 246 AA. AC V4MAS3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ52232.1}; GN ORFNames=EUTSA_v10017156mg {ECO:0000313|EMBL:ESQ52232.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ52232.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ52232.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517385; ESQ52232.1; -; Genomic_DNA. DR RefSeq; XP_006410779.1; XM_006410716.1. DR GeneID; 18027949; -. DR KEGG; eus:EUTSA_v10017156mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 38 143 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 38 143 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 246 AA; 28658 MW; 56F791926489C05C CRC64; MSINQYSSDF HYHSLMWQQQ QQQHHHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR ADGRRFFIGW RRRGDSSSSS ESYRHLQSNA SLHYPHAGAQ AGESQRGNSK TLRLFGVNME CQLDSDWSEP STPDGFTTCP TSHDQFHFYP QQHYPPPYFM DISFTGDVHQ TRSTQE // ID V4MBB8_EUTSA Unreviewed; 254 AA. AC V4MBB8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ53679.1}; GN ORFNames=EUTSA_v10026054mg {ECO:0000313|EMBL:ESQ53679.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ53679.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ53679.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ53679.1; -; Genomic_DNA. DR RefSeq; XP_006412226.1; XM_006412163.1. DR GeneID; 18029513; -. DR KEGG; eus:EUTSA_v10026054mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 47 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 47 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 254 AA; 29624 MW; 2F32FA454E19FC76 CRC64; MKRKQDEVYF EQGWVKFVED NSLSDGDFLT FVYNGDRIFE VSIYGPDGCK EVRAVTEADD DEEDSSNDTD AISESEVVTT IPRSKNKGKS KVGVVEESDD DEEDSIYTDT ETETDTGFPG KSKLTEDVDD SVKLQRERVK PKIKNPEAYL DNPRNIYFET GVKKRIYELL IHAQLVKDYS LKFEKNIYYI DNHKNGKLEA KTTMWKDQRV YIKKWQRICK RNSLKKEDGI LCELFRRQGL VYAVKVHIIR EKDL // ID V4MBN8_EUTSA Unreviewed; 233 AA. AC V4MBN8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ53824.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10027291mg {ECO:0000313|EMBL:ESQ53824.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ53824.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ53824.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ53824.1; -; Genomic_DNA. DR RefSeq; XP_006412371.1; XM_006412308.1. DR GeneID; 18029403; -. DR KEGG; eus:EUTSA_v10027291mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 126 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 233 233 {ECO:0000313|EMBL:ESQ53824.1}. SQ SEQUENCE 233 AA; 26348 MW; 376DC74FC649BC77 CRC64; MEGNCRNCMR REEEIYWNQF QTHHFSHLLL PDFHSRLVSP SLLVSQAGFE QDERINSDII TEAGQLPVTS PTSGGKYPLS VSKKKRGEIS NNNLDPKAAS SRTSVSETCK RKALSLAKSA VSANGFLVAM KRSHVLTKCF LTIPIKWSAK NMSHEPQEVV MQMNQRKWHM KFSSYRSPDR GGITTGWKKF VRDNHLCLGD VCVFEPAKPE TKPLHIYVYI FRAAETESSS NNG // ID V4MC55_EUTSA Unreviewed; 765 AA. AC V4MC55; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ53979.1}; GN ORFNames=EUTSA_v10024481mg {ECO:0000313|EMBL:ESQ53979.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ53979.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ53979.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ53979.1; -; Genomic_DNA. DR RefSeq; XP_006412526.1; XM_006412463.1. DR GeneID; 18030261; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 273 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 502 552 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 273 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 765 AA; 84373 MW; FCFD9077D1E3EA72 CRC64; MESTKVCMNA QCGAASTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELLDNGGVSC ISCAKKSGFF SMNVNHEANG RGFPSFASPE HGTNLKHLLH FQRIGSTQSF FQMKQEDSLL PALRHKTEKQ ELSAQPNLSI SLGFTSPFHD AVVDDTSKAT PIFQLAPRSR QLLPKPANSA PTSAGMEPNG SLVSQIHVAR PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ YPHLSNSKII PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT EPEGKLVMGY RKATNSTAAQ MFKGSSEPNL SMFNNNLSPG CGDINWSKLE KPEDMAKDNL LLQPSLTSAR KRVRNIGNKS KRLLIDSVDA LDLRVTWEET QDLLRPPQSV KPSICTVEDY DFEEYDEPPV FGKRTVFVSR QTGEQEQWVQ CDACGKWRRL PVDTLLPPKW LCSDNVLDPG RSSCSAPDEL SPREQDTLIR LSKEFKRRRL ASSNEKLNQE QEASALDTLA NAAITTTGGQ GDTAVAATTK HPRHRAGCSC IVCSQPPSGK GKHKPSCTCT VCEAVKRRFK TLMMRKRNRE EAGQASQQAQ SECRDETEVE SIPAVEAAAG GNIDLNTDPG ASRVSMMSLL QAATFPLESY LKLKAIIPNT AAEQQSSDMV STEHGSSSAA QEHDRDTSGA PESLN // ID V4MC96_EUTSA Unreviewed; 359 AA. AC V4MC96; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ54019.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10026818mg {ECO:0000313|EMBL:ESQ54019.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54019.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54019.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54019.1; -; Genomic_DNA. DR RefSeq; XP_006412566.1; XM_006412503.1. DR GeneID; 18030214; -. DR KEGG; eus:EUTSA_v10026818mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 127 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 354 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 127 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 354 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 359 359 {ECO:0000313|EMBL:ESQ54019.1}. SQ SEQUENCE 359 AA; 40874 MW; DA43F08C22A9D772 CRC64; MANPPLQSPT NPHFFQPLLP GFDTNFTIPV AFFSKHIEGK NDLKTAKLRS DASEITWEVK LDGRRLTGGW KDFTTAHDLR IGDIVVFKHE GDMVFNVTPF GPSCCEIQKK TLKPKTEPKS SLSFDYCFVA EVTASNIKSD KLRLPMEATS SNALNRGCHK MIVVNEEGKS WTLSLRFRES DTSYYIGGGW TRFCRENKRK AGDSILFNLV GDGRSTPMIC ICPEEECSEL MSKYMGKKKI KRRPIWVASS SSRQNRFVTI ILTHYNMRHS KLILPINFVK INGINKHEEI ILKDKHGVKR LTKLTKDGPN YGRRGLGKGW KDFCKANDVF KIGQPFKLEL IWEDTIPVLK FCSKIESIS // ID V4MCQ2_EUTSA Unreviewed; 672 AA. AC V4MCQ2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10024601mg {ECO:0000313|EMBL:ESQ54214.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54214.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54214.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54214.1; -; Genomic_DNA. DR RefSeq; XP_006412761.1; XM_006412698.1. DR GeneID; 18030906; -. DR KEGG; eus:EUTSA_v10024601mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 120 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 120 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 672 AA; 74008 MW; 9C346BB083BF8A10 CRC64; MINVMNPMKG GSEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEFVDHE YVDGEDSNGF DSNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTSESVIEAA TLAITGRPFE VVYYPRASTS EFCVKALDVR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR KKMRLPQHTD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNG PPPSHPPPPA TSSLPLSPPL GLRNIDSRNE KGFCFLTMGT APCNDTEAKK SHIVLFGKLI LPEEQISGST DTANVEKTQI SSGGSNQNCV AGRELSSSDE GSPCSNKVHD AGGLETGHCK VFMESDDVGR TLDLSVLGSY EELNRKLSDM FGIQNSEMLS SVLYRDASGA IKYAGNEPFS EFLKTARRLT ILTEQGSESV VI // ID V4MEH2_EUTSA Unreviewed; 250 AA. AC V4MEH2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ50923.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10023054mg {ECO:0000313|EMBL:ESQ50923.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ50923.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ50923.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517392; ESQ50923.1; -; Genomic_DNA. DR RefSeq; XP_006409470.1; XM_006409407.1. DR GeneID; 18025917; -. DR KEGG; eus:EUTSA_v10023054mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 197 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 197 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESQ50923.1}. SQ SEQUENCE 250 AA; 28375 MW; 890338486A35E760 CRC64; SQRAIPYDFM RSVSEHELSG KMKIRAQWGS SWDIGISKNP RFYFMEKSGW EKFVRENYLG EDDFLTFTHK GKMCFNVKIF KKDGLEMICP QQSMAFFASS SQVKREGDEV VSPDLGPTAT ETNGEGKFKR KLNSGKKKAK ESESSTMIKE TVSARRDCAG ASSSSSAEFT PIRVSVSRNL MPKQRTTFKI HHPDMKKSWN VVYVPRHEAG GLFSSGWRIL VQEYPVLVGE ACKFTFLKPT ELLLIVSKRA // ID V4MFJ2_EUTSA Unreviewed; 702 AA. AC V4MFJ2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10016329mg {ECO:0000313|EMBL:ESQ51313.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ51313.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ51313.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517385; ESQ51313.1; -; Genomic_DNA. DR RefSeq; XP_006409860.1; XM_006409797.1. DR GeneID; 18028038; -. DR KEGG; eus:EUTSA_v10016329mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 115 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 589 677 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 115 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 702 AA; 77733 MW; 41C0BF49BF0BB536 CRC64; MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV AVKFLADAET DEVFSKITLL PLPGNDLDLE NDAVLGLTPS PDGNGPNGNE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYTAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNGVGSDN NNIPYPGFSG FLRDDETTTS KLMMMKRSGG NGNDANAAAG GGRVRVEAVA EAVARAARGQ AFEVVYYPRA STPEFCVKAS DVRSAMRIRW CSGMRFKMAF ETEDSSRISW FMGTVSAVQV ADPIRWPNSP WRLLQVAWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PRKKLRIPQP FEFPFDGTKF PFFANNNGES MCYLSNDNNN NAPAGIQGAR QAQQLFGSPS PSLLSDLNNL NSYSAVNKLH QSSSPAMFLS GFNPRHHHYD NIVLSRQGRD TEFNNNNNIS CSLTMGNPGL VHDKKKSGSV KTHQFLLFGQ PILTEQQVMN RKRSLEEEAE AAQEEKTGSW NYGLQGLETG HCKVFMESED VGRTLDLSVI GSYQELYRKL AEMFCIEERS DLLTHVVYRD ANGVIKRIGD EPFSDFMRAT KRLTIKMDIG GDNVRKTWIT GIRNGENGID SSTKTGPLSI FA // ID V4MFL2_EUTSA Unreviewed; 516 AA. AC V4MFL2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ54027.1}; GN ORFNames=EUTSA_v10027418mg {ECO:0000313|EMBL:ESQ54027.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54027.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54027.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54027.1; -; Genomic_DNA. DR RefSeq; XP_006412574.1; XM_006412511.1. DR GeneID; 18030222; -. DR KEGG; eus:EUTSA_v10027418mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 176 272 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 315 411 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 176 272 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 315 411 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 516 AA; 57868 MW; 7C42FA81EDD0BDA1 CRC64; MDRVISSSTK KPIFVIDLSE QSSNPMIPDS FISKHFNGKF QSTKLKLTSD ASDRAWEVGL DGQRFADGWK TFSDHHCVRY DDVLIFRHDG DMVFHVTPLG RSFSHQIQFL SSTSDDENDD DDSGSEDNIF DDDDDDDNAD VKDDDDDGDD DYSTSEEDLY PKKTSSKKRA RSEKSYLVAH VTASNLSRNH ICLTNKFARA NGLNNRQCEI DLRNEEGKSW TMDLRHNKTT GQAFISRGWR SFCKENGLKA ESFCRFECVQ SGTKPVLQLC PNSSSIPDGN SSKVNEKRNV SETEGDEIES PDRSQTAASM VQNRIFTLAL KPYMLRTGQL RLPASLSRGN GINEAGEITV VNKLGVEWKL HLVNIKGRGQ FYIRRFKDCF VANGIKKIND SFTLEVVRGG TSPILKICTE ERKTPQTVQA LRAGEATETP VQKRSRVCVE GGPSRCTRAS NKSSGEPENL QGKQPLQSCS ISDQVTKVKQ SIVETLTDVK RFRSELEIKE QNLEASLLEI DELGMI // ID V4MHZ3_EUTSA Unreviewed; 707 AA. AC V4MHZ3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10024554mg {ECO:0000313|EMBL:ESQ54942.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54942.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54942.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54942.1; -; Genomic_DNA. DR RefSeq; XP_006413489.1; XM_006413426.1. DR GeneID; 18030710; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 191 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 596 696 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 191 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 707 AA; 79907 MW; 7326D3AC819288A3 CRC64; MVVVGFKASC LFISLKGAEV VKTYVIASSL NRRERRLKSK VFVCLVIERS FNQLWIFGFL TLRRAAGYKL ELMANRGGDG GGEHLYDELW KLCAGPLVNV PQAEERVYYF PQGHMEQLEA STQQDLNTMK PLFNLPPKIL CRVMNVRLQA EKDTDEVYAQ ITLIPEGTQV DEPMSPDPSP PETQRPKVHS FSKVLTASDT STHGGFSVLR KHATECLPPL DMTQQTPTQE LVAEDVHGYQ WKFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGELRVGVR RANRQQSSMP SSVISSHSMH LGVLATACHA TQTRTMFTVY YKPRTSQFII SLNKYLEAMT NKFSVGMRFK MRFEGEDSPE RSFSGTVVGG KDCSPHWKDS KWRCLEVHWD EPASISRPDK VSPWEIEPFV TSENVPQSVV LKNKRPRQVS EVSALGITAS NLWSSALTQS HEFAQSCITS QRNSPKQYYR DAIEDAKNPD WPISPYSVSN VSKDSTLNDQ MVFPVKQKKP ETTASYRLFG IDLMSSSIAA SEEKTAAMRP INITKPTPES NSDPKSEISK VSEEKKQEPA QASPKEVQSK QSSSTRSRTK VQMQGVPVGR AVDLTVLSGY SELIDDLEKL FDIKDELRSR SQWEIVFTDD EGDMMLVGDD PWPEFCNMVK RIFIWSKEEV KKMTPGNQLR MLLTEVETAS KTDNHSD // ID V4MIN2_EUTSA Unreviewed; 728 AA. AC V4MIN2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ55217.1}; GN ORFNames=EUTSA_v10024526mg {ECO:0000313|EMBL:ESQ55217.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ55217.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ55217.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ55217.1; -; Genomic_DNA. DR RefSeq; XP_006413764.1; XM_006413701.1. DR GeneID; 18029129; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 331 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 331 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 728 AA; 81303 MW; 8F4F5C33D4907A59 CRC64; MSSSSSLSSR FCFNRECSEF KLEHYRPGWR LQTGDFADLC HRCASAYEQG KFCDIFHQRA SGWRCCESCG KRIHCGCIVS ASAFMLLDVG GIECLACARK KVALGPNYLP QLPIFFQSPI AEKFKDLSIN WNSSTGSNQI SCRPPSFLGQ SVLQFDLHNR GDSYEFSRPT SKDRATACSI EKKWGMNDLM GKLMSEKSKS HTSDILNNQN AGPNCEVLPS SNVNVYRPLI SLKEGPCGTQ LAYPVPLTTP IETNVHSRLN GRSLWHTPKS SSLNFLRNDL NGGADSLCSL THLDTPGKYQ VVPRYWPKVS YKNQVPQNLS KESESVVIPL FEKMLSASDT GRVGRLVLPK KYAEAFLPRL SNTEGVPLKV QDSMGKVWTF QFRFWPSNNS RIYVLEGVTP CIQSMQLQAG DTVIFSRVDP ERKLIMGFRK ASVAQSADQE TDSTNNNRDS CTNGDGESID NHSPSRAKKS AYKAKETPGV GFSSRKKKSS MMITRSKRQK VEKGDHTELK LTWEEAQGFI LPPPSLTPSI IKIEGFEFEE YKDAPIIGKP TTGSTCSANK KLLAEQYDEE AMEETEGLMM SPKETTKHPR HRRGCTCIVC IQSPSGTSPK HDNCCSCTVC DAVKRRRRSL LLGRKNKQIE KENKAQKELE SLNSDEELHQ SANNSGTTSK SHEHDASPQK GQIDLNFQPE KEEESLHKTT KDKSLHHDDT SFKPSSSSSA HSQIEKQD // ID V4ML08_EUTSA Unreviewed; 278 AA. AC V4ML08; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ32086.1}; GN ORFNames=EUTSA_v10004752mg {ECO:0000313|EMBL:ESQ32086.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ32086.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ32086.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517748; ESQ32086.1; -; Genomic_DNA. DR RefSeq; XP_006394800.1; XM_006394738.1. DR GeneID; 18011858; -. DR KEGG; eus:EUTSA_v10004752mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 278 AA; 31654 MW; B167D1FBB93D183C CRC64; MPFKSFMDTL LENTSKPSFC KSLTLGESWK SKSMRIIPEE FVTSTPGAFE HRVVFSVRWG NSWQLWLKRD KKGLFMEEED WNEFVDDNFL GPHDVLFVTH EDTMNLEVRI YKNYIHLMKE IISPPVEADP EAELLNPIPQ NSHQETPAST SASASASASG ARQGCVPVIN PEQYLVNPKS PYFVKTLTKK IDVLYVKQPV IDKYGLKFGP HKSTMYYLIG KEKHEALTKI YCNGRNFCFS GWAAICRKYK LGEGDTVVCE LERSGGVVTA VRVHFVNE // ID V4MMG6_EUTSA Unreviewed; 575 AA. AC V4MMG6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ53978.1}; GN ORFNames=EUTSA_v10024481mg {ECO:0000313|EMBL:ESQ53978.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ53978.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ53978.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ53978.1; -; Genomic_DNA. DR RefSeq; XP_006412525.1; XM_006412462.1. DR GeneID; 18030261; -. DR KEGG; eus:EUTSA_v10024481mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.40.10; -; 2. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 273 374 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 502 552 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 273 374 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 575 AA; 64277 MW; 136FB1984D4C69C5 CRC64; MESTKVCMNA QCGAASTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELLDNGGVSC ISCAKKSGFF SMNVNHEANG RGFPSFASPE HGTNLKHLLH FQRIGSTQSF FQMKQEDSLL PALRHKTEKQ ELSAQPNLSI SLGFTSPFHD AVVDDTSKAT PIFQLAPRSR QLLPKPANSA PTSAGMEPNG SLVSQIHVAR PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ YPHLSNSKII PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT EPEGKLVMGY RKATNSTAAQ MFKGSSEPNL SMFNNNLSPG CGDINWSKLE KPEDMAKDNL LLQPSLTSAR KRVRNIGNKS KRLLIDSVDA LDLRVTWEET QDLLRPPQSV KPSICTVEDY DFEEYDEPPV FGKRTVFVSR QTGEQEQWVQ CDACGKWRRL PVDTLLPPKW LCSDNVLDPG RSSCSAPDEL SPREQDTLIR LSKGMILNHY RSVTF // ID V4MMK3_EUTSA Unreviewed; 437 AA. AC V4MMK3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ54023.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10027164mg {ECO:0000313|EMBL:ESQ54023.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54023.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54023.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54023.1; -; Genomic_DNA. DR RefSeq; XP_006412570.1; XM_006412507.1. DR GeneID; 18030218; -. DR KEGG; eus:EUTSA_v10027164mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 151 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 335 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 151 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 335 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 406 437 {ECO:0000256|SAM:Coils}. FT NON_TER 437 437 {ECO:0000313|EMBL:ESQ54023.1}. SQ SEQUENCE 437 AA; 49444 MW; E006890BC1AED366 CRC64; MENASLFSPA NPHFFQPLLT GSHSHLSIPV KFFSKHIEGK YEGKTVTLRS DASEKTWKVK MEGQRLTEGW KEFVRAHDLR IGDFVVFRHE GDMLFHVTAL GPSCCEIQYA PSGSRDEDKE ETSETGSETS DKEVEPNLSG TSNHSSSDLT CFRQFVTASN LSRDTVGVPS AFAKRNGLNK GSQEIILMNE EGRSWPSQQK TLVDYRIVIV RGWTSFCTAN KLEAGDSCTF KLLQNANTPV FRLCSRTKHL PVSFTRANGL IKPEKVILVD KNRAEWSMNL KVEKGSGTMY IMSGKHWKRF CAVNEVGAGE SLTLELIRGG KLHNNYLCFQ MEQSPFDAQA RTHKRARVQR WISQETRPKH EIREKAAEEG EPFRRTRASN NANQGNLENT HPCSVSDLVP KVKQSVADTL TSIRLFREEL EKMEQKLEDS LQEIDNL // ID V4MMK7_EUTSA Unreviewed; 501 AA. AC V4MMK7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ54028.1}; GN ORFNames=EUTSA_v10027046mg {ECO:0000313|EMBL:ESQ54028.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54028.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54028.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54028.1; -; Genomic_DNA. DR RefSeq; XP_006412575.1; XM_006412512.1. DR GeneID; 18030223; -. DR KEGG; eus:EUTSA_v10027046mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 178 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 302 396 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 178 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 302 396 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 465 492 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 501 AA; 56395 MW; B7475EA7AA8BB1AD CRC64; MADPSIPPKH NPSFFLASLA DQNSIPRIPD AFFHAHLEHK KELVKLKLTS DAFERTWEVK LNGRSFAGGW EDFSAAHCLK DDDVLIFRHH GDMTFHVTPS GRSFSKILCI SSSSDDSDDD DDDDDSEDDD DDSDNDSEDD DDEDDDDDET WDNGSDSKNI LSKEKSRLKA ESSSSENSCF LAPTPSNLRQ DRVSLTKRFS RTNALNKRWC VIDLMNQRGK SWALGLRHNK VTGQDYILGG WRSFCRANEL KTGIFYRFEL VRNGARPLLQ LCSDITSQGN CSKANRKAKV SAKSSREDES ASLTVTLKPY MLKSRQLRLS SDFSRKNGIK KEGEITLVDK NGVKWPSYVV CVQGRLYITK GVIDFWAANQ IETGETFTLE LVRGEGTTPM LKFCSKAKVQ EETETRFQKR ARVSSEGGPS RCTQASNKST AAPKNLECKQ PLQPCSFSDQ LTKVKQCSVG IITDVRRFRS ELEIKEQNLE ALLQELSALG EKVLEINKII K // ID V4MMP2_EUTSA Unreviewed; 320 AA. AC V4MMP2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ32806.1}; GN ORFNames=EUTSA_v10005481mg {ECO:0000313|EMBL:ESQ32806.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ32806.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ32806.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517748; ESQ32806.1; -; Genomic_DNA. DR RefSeq; XP_006395520.1; XM_006395458.1. DR GeneID; 18011537; -. DR KEGG; eus:EUTSA_v10005481mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 103 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 103 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36289 MW; EBE8958938912436 CRC64; MMDGAASAAH DVETKASTLM ASVDHHHHHH QPGFGSGSGH DHGLSASVPL LGVNWKKRRM PRQRRSSSSF NLLSFPTMPP SSSHVPTPLP ARKIDTRKLR FLFQKELKNS DVSSLRRMIL PKKAAEAHLP ALESKEGIPI RMEDLDGLHV WTFKYRFWPN NNSRMYVLEN TGDFVNAHGL QLGDFIMVYQ NFHSNTYVIQ ARKASEEEED ITNVDEDDVY TDLTRIENTV VNDLFLQDYN HDHYNNNNNN NEKCSFNYPV IDDITTATTT PSFVYDTTAL TSNDTPLDYL GGLTTNNYYS KFGSFEGFGS VENISLDDFY // ID V4MMZ0_EUTSA Unreviewed; 345 AA. AC V4MMZ0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ32916.1}; GN ORFNames=EUTSA_v10004508mg {ECO:0000313|EMBL:ESQ32916.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ32916.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ32916.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517748; ESQ32916.1; -; Genomic_DNA. DR RefSeq; XP_006395630.1; XM_006395568.1. DR GeneID; 18012712; -. DR KEGG; eus:EUTSA_v10004508mg; -. DR KO; K09287; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 66 121 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 187 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 66 121 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 187 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 345 AA; 38866 MW; 77C991A0E6FD29BD CRC64; MDAVSSVDES STSTDSIHTP AKIPPLTSSR KSSSPASLHR MGSGSSVVLD SDNGVEAESR KLPSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAYR FRGRDAVTNF TAETNGDKDE VDFLNAHSKS EIVDMLRKHT YKEELEQRKR NRDGNGKRKE TAFVTAVTGF KSAESLFEKA VTPSDVGKLN RLVIPKHQAE KHFPLPLAGD VSVKGTLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKRLCAGD LISFRRSNGQ DRQLYIGWES KSGSDQDTGR VVMRLFGVDI SKSLNNAVVK EEETEMLSLR CYKKRRVFDA FVTTV // ID V4MSL0_EUTSA Unreviewed; 901 AA. AC V4MSL0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10006748mg {ECO:0000313|EMBL:ESQ34811.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ34811.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ34811.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ34811.1; -; Genomic_DNA. DR RefSeq; XP_006416458.1; XM_006416395.1. DR GeneID; 18992943; -. DR KEGG; eus:EUTSA_v10006748mg; -. DR KO; K14486; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 155 257 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 792 876 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 155 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 901 AA; 99658 MW; 8ADB322CF876E63F CRC64; MMASMACVED KMKTNGLVSG GTTTTSQSTL LEEMKLLKDQ SGTRKPVINS ELWHACAGPL VCLPQVGSLV YYFSQGHSEQ VAVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE IYAQMSLQPV HSERDVFPVP DFGLLRGSKH PTEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTAQP PTQELVVRDL HENTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL FIRDEKSQLM VGVRRANRQQ TALPSSVLSA DSMHIGVLAA AAHATANRTP FLIFYNPRAC PAEFVIPLAK YRKAICGSQL SVGMRFGMMF ETEDSGKRRY MGTIVGISDL DPLRWPGSKW RNLQVEWDEP GCNDKPTRVS PWDIETPESL FIFPSLTSGL KRQLHPSYFA GETEWGSLIK RPLIRVSDSA NGILPYASFP NMASEQLMKM MMRPHNNQNA TSFMSEMQQN VLMGHGGLLG DMKMQQPMVR NQKSEMVQPE SKLTVNPSAS NISGQEQNLS QSMNAPAEPE KSTLSGCSSG RVNHGSEQQS MEQASQVKTV TVSNEEKVNQ LIQKPSALSP PQADSCPDIT QQMYPPLSDP NPINGFSFLE TDELTSQVST FQSLSGSYKQ PPMLSSQDSS AVVLPDSTNS SLFHDLWDTQ LNGLKFDQFS PLMQQDLYAC QNMCMSNSTH SNILDPPLSN TVLDDFCAIK ETDFQNQPSD CLVGNNNSSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDTSLLQNSK GSWQKLATPR VRTYTKVQKT GSVGRSIDVT SFRDYEELKS AIECMFGLEG LLTQPQSSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGINDLKTSV S // ID V4MWI9_EUTSA Unreviewed; 351 AA. AC V4MWI9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ36721.1}; GN ORFNames=EUTSA_v10008068mg {ECO:0000313|EMBL:ESQ36721.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ36721.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ36721.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517683; ESQ36721.1; -; Genomic_DNA. DR RefSeq; XP_006418368.1; XM_006418305.1. DR GeneID; 18994634; -. DR KEGG; eus:EUTSA_v10008068mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 57 163 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 57 163 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 351 AA; 39745 MW; E71DC09D29D164A6 CRC64; MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGATGNNN NNLPMMMIPP PEKEHMFDKV VTPSDVGKLN RLVIPKQHAE RYFPLDSSNN QNGTLLNFQD RNGKMWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV SFQRGIGDES ERSKLYIDWR HRPDMSLVQT HQFGNFGFNF NFPTTSQYSN RYHPLPEYNP VPIHRSLNIG NHQRSYYNNQ RQEFVGYGYG SLAGRCYYTG SPLDQRNIVG SEPLVIESVP VVPGRLAPVL MPPLRPPPST AGKRLRLFGV NMECGNDYNQ QEESWIVPRG EMGASSSSSA LQLNLSTDHD DDDDDQFAKK GKSSFSLDFN P // ID V4N2C3_EUTSA Unreviewed; 317 AA. AC V4N2C3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ39331.1}; GN ORFNames=EUTSA_v10001555mg {ECO:0000313|EMBL:ESQ39331.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ39331.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ39331.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517481; ESQ39331.1; -; Genomic_DNA. DR RefSeq; XP_006397878.1; XM_006397815.1. DR GeneID; 18015806; -. DR KEGG; eus:EUTSA_v10001555mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 33 139 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 33 139 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 317 AA; 35314 MW; 5642DCBFAFE0E770 CRC64; MMTNLSLTRE LGEEDEEAEA KRPVEEVERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDSSSNEKGL LLNFEDLTGK SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR CIGDSGRDSR LFIDWRRRAK VPDHPTSIAH FAAGAMFPSF YSFPTTTTST SYNLYNHHHQ PRHLQSSGYS YPQIPREFGY GYFVRSVDQR AVADPLVIES VPVMMHGGAR VTQAVVGAAG KRLRLFGVDM ECGESGVTNI TEEDSSSSGG SLPRGGGGGG GASSSSSLFQ LRLGSSSEDD HFSKKGKSSL SFDLDQY // ID V4N7Z1_EUTSA Unreviewed; 352 AA. AC V4N7Z1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ41796.1}; GN ORFNames=EUTSA_v10015705mg {ECO:0000313|EMBL:ESQ41796.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ41796.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ41796.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ41796.1; -; Genomic_DNA. DR RefSeq; XP_006400343.1; XM_006400280.1. DR GeneID; 18017349; -. DR KEGG; eus:EUTSA_v10015705mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 203 296 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 203 296 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 352 AA; 39746 MW; 7C2B68E911535050 CRC64; MVKNSGFGQI MQEGDNPGFF KILRKEDLSS EIMRMIPHQF IRSISDNSSS FKMVLKLPWG SSWPVKISKN PSFHYMEDRG WNRFVSDNAL GENEYLTFTH EANMCFNVNI YEPDGTEMLR PRESATIASS SGLNKREQRK EVKTEEIIES SSESSYPGLN KAESAGSRLK KKRELNLGKK KAEKTGKPKK KKVDSAAGTS SLVPEFNLTI KKSHLLYFAI PKNFVDMHMP KKTKLFKIHP EGENSWEVLY LVTGVQSRFS AGWSRLAKDL GLVVGDVCTF KLIKPTEMLL KVSRDGDDDA DDDDDDADDD DDDDADDDDD DADDDDDDAD DDDDDDDDDD DDDDDDDDDD DV // ID V4N801_EUTSA Unreviewed; 316 AA. AC V4N801; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ41806.1}; GN ORFNames=EUTSA_v10014143mg {ECO:0000313|EMBL:ESQ41806.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ41806.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ41806.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ41806.1; -; Genomic_DNA. DR RefSeq; XP_006400353.1; XM_006400290.1. DR GeneID; 18017543; -. DR KEGG; eus:EUTSA_v10014143mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 19 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 213 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 19 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 213 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 36738 MW; 21E37F293D08C6CE CRC64; MTKNSCFGQI IEEGDNPGFF KVLRKEDLST EIMRAIPHDF IRSISNKEFS FKMVLKLPWG SSWPIKISRN ERFYYMEKSG WDKFLSDNDL GHDELLTFTH KGHMCFSVNI YQIDCKEILR PKKTATIASS SRNKREQGKN IYNDVKEEEI ESLSESLSFP GSETDESTGR KLKQRRKINL GKKKVEEAEK TKKKKKNVDT DCDHSEAGTS SLVPKFTLTI KKSYLKFLAV RKKFADMHMP KETTMFKIHH SKEKRSWKVK YVVSDICESR FSPGWVRLAR EFVLQVGDVC TFELIKPAEM VLSVTKKRQC DVCEMI // ID V4N8R7_EUTSA Unreviewed; 1088 AA. AC V4N8R7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10012513mg {ECO:0000313|EMBL:ESQ42096.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ42096.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ42096.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ42096.1; -; Genomic_DNA. DR RefSeq; XP_006400643.1; XM_006400580.1. DR GeneID; 18017331; -. DR KEGG; eus:EUTSA_v10012513mg; -. DR KO; K14486; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 961 1054 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 70 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1088 AA; 120646 MW; 1E64FCD7DFBC86A0 CRC64; MQKQTDFIPS YPNLPSKLIC MLHNVTLNAD PETDEVYAQM TLQPVNKYDR DALLASDMGL KLNRQPNEFF CKTLTASDTS THGGFSVPRR AAEKIFPALD FSMQPPCQEL VAKDIHDNTW TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDG KAQLLLGIRR ANRQQPALSS SVISSDSMHI GVLAAAAHAN ANNSPFTIFY NPRAAPSEFV VPLAKYTKAM YAQVSLGMRF RMIFETEECG VRRYMGTVTG ISDLDPVRWK NSQWRNLQIG WDESAAGDRP SRVSVWDIEP VLTPFYICPP PFFRPRFAGQ PGMPDDETDM ESALKRAMPW LDNSLEMKDP SSTIFPGLSL VQWMNMQQQN GQLPSAAAQS GFFPSQTAAL HNSLGGTDDP SKLLSFQTPP GGISSSNLQF NKPNPQAPMS QLPQPSTTLS QQQQLQQLLH ASLNHQQQQS LSQQQQQQQS LQQQHQQPLQ QQSQQLQQSQ QLRTQPSQSH SHPQPQPQPQ HLQPHKLQQF QLPQNQLYNG QQAAQQFKEQ QASMHHLLPQ VVSESMASSV IAPSSSSHNQ SFQQQQQSTQ LHHTHRHLGA STSQSSVIET SKSSSNLMSI PPQDTQFPRQ VEQQQPPGLV KGHNQQTLLQ QKTQQAQAHA QVQQLFQQNL LEQPHLQFQL LQRLQQQQQQ QQQQQHQQFL SPGSSSMQSQ LLHQQLPQLP SLSQGQQFPS SCINNGLSTL QPPQMVVSRP QDKQNPPVGG GVKAYSGITD GGDAPSSSTS PSTNNCQISS SSFLNRSQSG PAILIPDTPV DMSGSLVQEL YNKSDMRQKQ ELVGQQKAKA SLTDHQLEAS ASGTSYGLDG GDNNRQQNFL APTFGLDGDS RNSLLGGATV DNGFVPDTLL SRGYDSQKDL QNMLSNYGGV TNDIGTEMST SAVRTQSFGI PNVPAFSNDV AVNDAAVLGG GLWPTQTQRM RTYTKVQKRG SVGRSIDVNR YRGYDELRHD LARMFGIEGQ LEDPQTSDWK LVYVDHENDI LLVGDDPWEE FVNCVQSIKI LSSAEVQQMS LDGNFTGVPV TNQACSGGDS GNAWRGHYDD NSATSFNR // ID V4N965_EUTSA Unreviewed; 791 AA. AC V4N965; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10012728mg {ECO:0000313|EMBL:ESQ42301.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ42301.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ42301.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ42301.1; -; Genomic_DNA. DR RefSeq; XP_006400848.1; XM_006400785.1. DR GeneID; 18016921; -. DR KEGG; eus:EUTSA_v10012728mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 174 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 668 750 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 174 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 87750 MW; 61FF2B4F2EA90236 CRC64; MEFDLNTEIA EVEDEEKDDG GVVGTGIEKG RLGISPSSSS SCSSGSSSSS STTVSASSIY SELWHACAGP LTSLPKKGNV VVYFPQGHLE QDPLVSYSSP LEIPKFDLHP QIFCRVVNVQ LLANKETDEV YTQVTLLPLQ EFSMLNVEGK EVRELGGEEE RNGSSSVKRT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF APLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK NLVSGDAVLF LRDEDGELRL GIRRSARPRN GLPDSIIEKN SCSDILSLVA NAVSTKSMFH VFYSPRATHA EFVIPYEKYT TSIRNPICIG TRFRMRFEME DSPERRCAGV VTGVCDLDPY RWPNSKWRCL LVRWDESFVS DHQERVSPWE IDPSGSLPHL SIQSSPRLKR PWAGLLDTTP PGNPITERGG FLDFEESVRP SKVLQGQENI GSASPLQGFD VMNRRILDFA MQSHANPVLL SSRVKDRFGE FVDATSLDPA CSGVMDLDRF PRVLQGQEIC SLRSFPQIAG FSPAATSGKP SLGYTDPFAY NQANKSSFYP LASQGIRSSH IPYQNPYNAG EKSSVHPINF GGESRKLDAQ NEGGLPKNVT ADLPFKIDMM GKQKGGDFDM NASSECKLFG FSLPVETPAA NPQSSSKRIC TKVHKQGSLV GRAIDLSRLN GYNDLLTELE RLFNMEGLLR DPEKGWRILY TDSENDMMVV GDDPWHDFCN VVLKIHLYTK EEVENGNDDN KSCLEQAAVL MEASKSSSVS QPDSSPTVAR V // ID V4N989_EUTSA Unreviewed; 250 AA. AC V4N989; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ42331.1}; GN ORFNames=EUTSA_v10014488mg {ECO:0000313|EMBL:ESQ42331.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ42331.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ42331.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ42331.1; -; Genomic_DNA. DR RefSeq; XP_006400878.1; XM_006400815.1. DR GeneID; 18018476; -. DR KEGG; eus:EUTSA_v10014488mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 250 AA; 28685 MW; 97E97EB4C93C1DFF CRC64; MNQGHNADYC LPKFFKVYLA GISGDDMEVP VSFNRCLPKC LPNNVTIKSI YGKIWKMALR KCGEKYVLVN GWKMIVKDED LVGGDVLEFD FDGSQCFNFC IYEPRTMCKR LRRSSVRGEE ETRANDDNDA TLEDVDVSDQ RQYLDDPNNP FFPVTLNPNR RSQLRIPRKV ITDYGLNFPE NITLVDTLVK KFGKLAKKIK IQLNGSVFVK GYGAILRRNN VKSRDKLICE LKKTGSNNMV HTIKFHVISE // ID V4NBR2_EUTSA Unreviewed; 140 AA. AC V4NBR2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ43366.1}; GN ORFNames=EUTSA_v10014972mg {ECO:0000313|EMBL:ESQ43366.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ43366.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ43366.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517464; ESQ43366.1; -; Genomic_DNA. DR RefSeq; XP_006401913.1; XM_006401850.1. DR GeneID; 18018883; -. DR KEGG; eus:EUTSA_v10014972mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 140 AA; 16097 MW; B415DA569B8A4C99 CRC64; MADNEVVLPR FFKFFLSVTT SESMSIPTTF TEHLKDPLPK TAKLQGTGGG TWTVNFSRIR ERAYITAGWS KFAEEHELKD GEYLTFVYDG ECTFEVSVYG RWGCKETRAV MQWSSFLILM KKILQWPDAS GESVFSEYFT // ID V4NJI6_EUTSA Unreviewed; 1036 AA. AC V4NJI6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ46461.1}; GN ORFNames=EUTSA_v10000028mg {ECO:0000313|EMBL:ESQ46461.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ46461.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ46461.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517426; ESQ46461.1; -; Genomic_DNA. DR RefSeq; XP_006405008.1; XM_006404945.1. DR GeneID; 18022323; -. DR KEGG; eus:EUTSA_v10000028mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 7. DR Gene3D; 2.40.330.10; -; 7. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 6. DR SMART; SM01019; B3; 7. DR SUPFAM; SSF101936; SSF101936; 7. DR PROSITE; PS50863; B3; 7. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 79 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 142 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 303 396 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 458 553 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 616 712 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 819 914 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 941 1036 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 79 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 142 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 303 396 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 458 553 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 616 712 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 819 914 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 941 1036 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 739 769 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1036 AA; 116879 MW; 417F18F9282A18C8 CRC64; MIPVDFFSMY VEGKRSVEKT TAELKSDSSD ITWRAKMTGR RLSDGWEEFA VANNFRTGDV VLVRYEGDLV FHVSDLGPNC CDVTFPSNKD QNNNNCDFLL KKHKHPRTDV GDDEEVPKKK KVKKKNSVDE TEADSSSLDN SCFVANVTAS NLCTDTLYLP QHFTSSNGIT IKCRKIVLID GGERSWALDL MLDETSDTFY ISRGWRRFCE ENGKKAGGFF TFKLVGNGET PVLSFSPTES IDNRRPRDCS EATGRVSLST ELSNKEADIE GERNEDECRI LETEKKKRRV LSYASYSPCR KRFVTFTLPP DYDRIRRLTL PKPFVMENGI NKGGEIYLLG KDGRKWPTSL LLDKTGQMRW RKGWKEFVKG NGLESGFTLK LIWEGTTPVF SLCSAESASD REEKEFSKAV EKQSIFKDPS KKDKIGKDEN KKEERRSMER GKDHLRGRNS TASSQDQFLS FTITPYSVEK CILPLPRKFT RENGINKPRM ITLLGKDGIK QQTKLLFSKG KKAALGNGWK SFVKANGLKI GDSFTLKLIW EETTPMLSLC HGECSIDRGE SSETDQKNSL PIEPSSCEKL SKDENSKVEN KETMSMEREK NHLRGRESTP SSQKQSVTLT MTPYSVKKCI LRLPKAFTRE NDINKHAMII LLGKDGIKHQ TKLLWDKGTG IMTLGKGWMD FAKANGLKTG NSFTLKLTWE DTTPVLSLCH AECSMDRGSG GECSETDQKK SLPIEPSSCE KISKDENSKE KNNNEANKKE ETMSMEREKN HLRGRDSTPS TQKQLMTLTI TPSSYSKCKL VSLSNNSCFR IQMISFFSCT LIGIIRILLS NLFQTLPAQF ARENSLNKPG MIDLLGKDGK KWMVNLVQDG DGRMNLGNDW KEFAKANDLK TGESFKMELI SEDGTRMLKL VHSNPNSSKA NEKESTEPRS RDSSSAIQNR TLTLTLTPED VRACILHLPS QFMKANGINK LGEITILGEN KVEWSAYLLS IRDGTVALEN GWDEFCKANG VKLGESFTLE FVYELNTSIV LKFCSR // ID V4NLN8_EUTSA Unreviewed; 385 AA. AC V4NLN8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ47336.1}; DE Flags: Fragment; GN ORFNames=EUTSA_v10028240mg {ECO:0000313|EMBL:ESQ47336.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ47336.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ47336.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517416; ESQ47336.1; -; Genomic_DNA. DR RefSeq; XP_006405883.1; XM_006405820.1. DR GeneID; 18022817; -. DR KEGG; eus:EUTSA_v10028240mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 145 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 284 380 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 12 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 145 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 284 380 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 385 385 {ECO:0000313|EMBL:ESQ47336.1}. SQ SEQUENCE 385 AA; 43723 MW; FB17DDD887DCC813 CRC64; MAYSISSSSL ANPHFFQPML PGFNTHLSIP VAFYTKHLQG REEGNEVELR VDVTEITWKV KIEGRRLTKG WENFTAANDL RVGDFLVFRH EGNLVFHVTP FGPSCCELIY SQEEEDEKNT KHKTGKLKVK KIPKQECSSS DSDTSFVVPV TASNLRLDGF HLPKSFTTSS GLSTLCQEII LMDEKGRSST LEMTYHNSTK RFHVRRGWRA FCCANELKTG CILRLMFFGN GAKPIPRMIP VERDEKDDDI GKHSKKKKDN LEVEHESVDE KKNVEPLSLS DNYSFVVPVT VCNLRDDRLF LPVKLSKSNI LNESCQEISL MNKQGRTWTL SLKYRKSSNQ FCITHGWKSF CHANGQKAGC SILFKLIRNR TGPVLIMTSE ASTSK // ID V4NXH2_EUTSA Unreviewed; 809 AA. AC V4NXH2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ51601.1}; GN ORFNames=EUTSA_v10016263mg {ECO:0000313|EMBL:ESQ51601.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ51601.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ51601.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517385; ESQ51601.1; -; Genomic_DNA. DR RefSeq; XP_006410148.1; XM_006410085.1. DR GeneID; 18026866; -. DR KEGG; eus:EUTSA_v10016263mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 305 406 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 606 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 305 406 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 809 AA; 88268 MW; 9729BC5E07D5BDA6 CRC64; MFEVKMGSKM CMNASCGSTS TVEWKKGWPL RSGALADLCY RCGSAYESSL FCETFHMDQS GWRECYLCSK RLHCGCIASK LMVELMDYGG VGCTTCASCH QLNLNKRSEN PGLFSRLPLK TLAERQHING ESGMSIDGGR NEADLFSQSQ RCDSQPLVPG VDKREDFMPP HRGFGILKSE NSTGYRLDAG EMHESSPLQP SLNMALAVHP YSPSFASTPV EGKKHIGPSQ SHIVQCSASS ILQKPSKSVL GTPPGTSKSA QARIGRPPVE GRGKGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGK EWTFQFRFWP NNNSRMYVLE GVTPCIQSMM LLAGDTVTFS RVDPGGKLIM GSRKAAHNTG DMQGYGLTNG TSNEDTSSSG VTENPSSINA SSCPSQIPEE LKGLPENLNG GSCSKKSEIN GGTMCDDPPR PKDKKRTRTI GAKNKRLLLH SEESMELRLT WEEAQDLLRP APSAKPTIVV IEEHEFEEFD EPPVFGKRTI ITSRPSGEQE RWASCDDCSK WRRLPVDALL SVKWTCSDNV WDVSRCSCSA PEESLKELEN VLRAGKDCKK RRIGVSQTAK TGQEPSGLDA LASAAVLGDA LGEPEVATTT RHPRHRVGCS CIVCIQPPSG KGRHKPNCGC NVCSTVRRRF KTLMMRRKKK QLERDGPAAA AAEDQENAEA KQGDSDKSKA EEEVKTGRID LNSDPYNRED IEAVAVEKEG SEGREVGQCS GVAQGGDVLG VTELVGEAEK ISEEPKGSS // ID V4P3N9_EUTSA Unreviewed; 470 AA. AC V4P3N9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ54026.1}; GN ORFNames=EUTSA_v10025105mg {ECO:0000313|EMBL:ESQ54026.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54026.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54026.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54026.1; -; Genomic_DNA. DR RefSeq; XP_006412573.1; XM_006412510.1. DR GeneID; 18030221; -. DR KEGG; eus:EUTSA_v10025105mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 4. DR SMART; SM01019; B3; 4. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 125 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 224 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 368 467 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 125 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 224 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 368 467 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 470 AA; 52742 MW; 6123D89DF7CF6728 CRC64; MANASLFSPA NPHFFQPLLS RFQSHLKIPV KFFSKHIEGK HEGKTVTLTS DSSKRTWKVK MEGHRLTDGW KEFVKAHDLR IGDFVVFRHE GDMLFHVTAL GTGESSRKEN DLKRESDQSS SDLTCFSQIV TASNLSRAVV GVPIDFARRN GLDKGRQKIV LMNKKGMSWK SEVKTSTAGQ VFICRNWRSF CTANKLEVGD SFKFQLLQNT ETPVFQLCSL AEFLPRKFVR PDGLNKSSKK ISLINEDARI WTLILKFRES TRTFYMRSGW RSFCRENGLK PGDSATFKLE SNSTGRPLLS FSSSESKCVS KKHINKWKRI ETGESSQRVS PPSSSSSSSS SSSSSSSSSS SSSSSSSSSS CSQSESRFVT LNVTPGTFKH CRIYLPKSFT RNNGMENAQG KNVTLLDNHR VEWPVNLVML KGSRRMHLGS GLIEFLRAIG VEAYKSFVLE LVWEDKTSPP VLKFCSKVNI // ID V4P3P1_EUTSA Unreviewed; 530 AA. AC V4P3P1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ54031.1}; GN ORFNames=EUTSA_v10024893mg {ECO:0000313|EMBL:ESQ54031.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54031.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54031.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54031.1; -; Genomic_DNA. DR RefSeq; XP_006412578.1; XM_006412515.1. DR GeneID; 18030226; -. DR KEGG; eus:EUTSA_v10024893mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 34 92 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 156 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 295 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 34 92 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 156 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 295 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 490 517 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 530 AA; 60407 MW; D8DA8C7DC32F4052 CRC64; MADPPNISLF HQRFLTGDNP LLTLDDEFLR HYTKVLLRSD ASDRIWEVKL NGNRLAGGWE EFAAVHRFRD GDVLVFRHDK DENFHVSVGS RSDSCDMQHA SPSIVDTDDT EIDDDYVESA DHHDDGEDED EDDAGDIVVS KNKKPEAESS SGDPCFITAH VTPYSLIKDR LDLSRNFTVA SFDEDNKPCE IDLANEKGRK WTLLLRRNIS TGVFYIRRGW TNFCSSNELR QGDLCKFKLS ENGERPVLWL CPQEYGNGHE EQECPRVSAE GGCSKEKSML DEIPKGKEKN TPSTFLKIKL TPNRFKSGQL YISSVFVNES GINNAGEITL LNKDGRKWSS YLHMTGKCGT EWFYLRKGWK EMCKANGVKV NDSFVLELIW EDANPTFKFY SKEENHENKG KGNRRTRKRR ACGTDLQGSS EEKSRRVERE GRRVSRRAEH DEKEKRGNTQ VSNRPTTNSS KLQRKQAKPC SVSDQVANVK RGILDTLKTV SQFRAELETR EKKLEAALLE IEALGERILG ISQILNNNLV // ID V4P5Z3_EUTSA Unreviewed; 637 AA. AC V4P5Z3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=EUTSA_v10024554mg {ECO:0000313|EMBL:ESQ54941.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ54941.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ54941.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ54941.1; -; Genomic_DNA. DR RefSeq; XP_006413488.1; XM_006413425.1. DR GeneID; 18030710; -. DR KEGG; eus:EUTSA_v10024554mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 526 626 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 637 AA; 71868 MW; F2ADA3BFDE64728C CRC64; MANRGGDGGG EHLYDELWKL CAGPLVNVPQ AEERVYYFPQ GHMEQLEAST QQDLNTMKPL FNLPPKILCR VMNVRLQAEK DTDEVYAQIT LIPEGTQVDE PMSPDPSPPE TQRPKVHSFS KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELV AEDVHGYQWK FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DTFVFLRGEN GELRVGVRRA NRQQSSMPSS VISSHSMHLG VLATACHATQ TRTMFTVYYK PRTSQFIISL NKYLEAMTNK FSVGMRFKMR FEGEDSPERS FSGTVVGGKD CSPHWKDSKW RCLEVHWDEP ASISRPDKVS PWEIEPFVTS ENVPQSVVLK NKRPRQVSEV SALDVGITAS NLWSSALTQS HEFAQSCITS QRNSPKQYYR DAIEDAKNPD WPISPYSVSN VSKDSTLNDQ MVFPVKQKKP ETTASYRLFG IDLMSSSIAA SEEKTAAMRP INITKPTPES NSDPKSEISK VSEEKKQEPA QASPKEVQSK QSSSTRSRTK VQMQGVPVGR AVDLTVLSGY SELIDDLEKL FDIKDELRSR SQWEIVFTDD EGDMMLVGDD PWPEFCNMVK RIFIWSKEEV KKMTPGNQLR MLLTEVETAS KTDNHSD // ID V4P6M6_EUTSA Unreviewed; 611 AA. AC V4P6M6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESQ55216.1}; GN ORFNames=EUTSA_v10024526mg {ECO:0000313|EMBL:ESQ55216.1}; OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; OC Eutrema. OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ55216.1, ECO:0000313|Proteomes:UP000030689}; RN [1] {ECO:0000313|EMBL:ESQ55216.1, ECO:0000313|Proteomes:UP000030689} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=23518688; DOI=10.3389/fpls.2013.00046; RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., RA Jenkins J., Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A., RA Mitchell-Olds T., Schumaker K.S., Wang X.; RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum."; RL Front. Plant Sci. 4:46-46(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI517384; ESQ55216.1; -; Genomic_DNA. DR RefSeq; XP_006413763.1; XM_006413700.1. DR GeneID; 18029129; -. DR KEGG; eus:EUTSA_v10024526mg; -. DR Proteomes; UP000030689; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030689}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030689}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 214 315 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 214 315 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 611 AA; 67877 MW; 5B0B85D28E3BFCAD CRC64; MLLDVGGIEC LACARKKVAL GPNYLPQLPI FFQSPIAEKF KDLSINWNSS TGSNQISCRP PSFLGQSVLQ FDLHNRGDSY EFSRPTSKDR ATACSIEKKW GMNDLMGKLM SEKSKSHTSD ILNNQNAGPN CEVLPSSNVN VYRPLISLKE GPCGTQLAYP VPLTTPIETN VHSRLNGRSL WHTPKSSSLN FLRNDLNGGA DSLCSLTHLD TPGKYQMLSA SDTGRVGRLV LPKKYAEAFL PRLSNTEGVP LKVQDSMGKV WTFQFRFWPS NNSRIYVLEG VTPCIQSMQL QAGDTVIFSR VDPERKLIMG FRKASVAQSA DQETDSTNNN RDSCTNGDGE SIDNHSPSRA KKSAYKAKET PGVGFSSRKK KSSMMITRSK RQKVEKGDHT ELKLTWEEAQ GFILPPPSLT PSIIKIEGFE FEEYKDAPII GKPTTGSTCS ANKKLLAEQY DEEAMEETEG LMMSPKETTK HPRHRRGCTC IVCIQSPSGT SPKHDNCCSC TVCDAVKRRR RSLLLGRKNK QIEKENKAQK ELESLNSDEE LHQSANNSGT TSKSHEHDAS PQKGQIDLNF QPEKEEESLH KTTKDKSLHH DDTSFKPSSS SSAHSQIEKQ D // ID V4RPG7_9ROSI Unreviewed; 444 AA. AC V4RPG7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36283.1}; GN ORFNames=CICLE_v10028399mg {ECO:0000313|EMBL:ESR36283.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36283.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36283.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36283.1; -; Genomic_DNA. DR RefSeq; XP_006423043.1; XM_006422980.1. DR GeneID; 18034512; -. DR KEGG; cic:CICLE_v10028399mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 80 171 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 80 171 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 380 435 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 444 AA; 50852 MW; 0AF1DB6172EDD1EB CRC64; MEEQSEPETP LLQTTKIKRK KTAESKMKLT QGAFDSSKES KSRRKRAMID DLYDHAKVNS PVIERAEEVR ANLAPSYPSF WKAMVKSNVS HGFWLHLPMR FCKFNMPKID TVFIVENESG EEYKINYISQ RTALSGGWKA FSDANQLYEG DVLVFHLVEP TRFKAYIVRA NGFGNVNADA KPLNSVPMDD ELEVAPKDHS EKRVKKNKRA KRVKPPPGFH RDNNQSNSLM LLETNNGHVE DQFNNDTEDL GPNKVLPHSE SSNFKEMKSI DDFTILVDGL AIDCELSDQH RNKYYDLCCS QNSFLHDHLL KSINCKLAAE IITQTVNIAE AIRACNLSTS RADYEIWDKT LKGFELLGMN VGFLRARLNR LMSLAFESEE SEVSKRLREV SAEQARAEEE MRSLELKLLR LKETMGRLDS EVESLKVKAE KHELKFQEEA NAPW // ID V4RPL8_9ROSI Unreviewed; 426 AA. AC V4RPL8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36348.1}; GN ORFNames=CICLE_v10028501mg {ECO:0000313|EMBL:ESR36348.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36348.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36348.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36348.1; -; Genomic_DNA. DR RefSeq; XP_006423108.1; XM_006423045.1. DR GeneID; 18033701; -. DR KEGG; cic:CICLE_v10028501mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 124 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 309 404 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 124 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 309 404 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 426 AA; 48437 MW; 1A7F498361941447 CRC64; MSEQQTTHGE AMSQPLAPYL PEEENQKRSC IFYKLIVPSI LHDKKLRIPN KFVKKFGDEL STVAKLTIPS GRLWLVELRK LNKKLWFDIG WHEFIEHCSI RAGYFMIFRY QGNSDFNVYI YDLANSEIEY PCNTCSSLEE EPSGNKKCPV PIDKDKEEDN SFGISQPLSS PCPVLFSSTI NVEEEGAYCK KHKNSTSGVK SEYLHLAEEV HNQEATFQSP QDKGIIQFKS NVTNKLDEVG LYFSGGTKRK ISGPGQITDS CKHKLEPVEL PKGRTSCKTY MRRGRALTSE EKKSALRAAE IFKSDNPCFK VVLRPSYVYK SLLLHIPSIF ARTYLNGIQG DVTLTGPNGK QWRVRCISQK GKAKFGQGWS EFVWENNLDE SDVCVFELIK TDDVTLKVTI FRVLQDPRPE ECHTSKKLES AMSVTS // ID V4RPM0_9ROSI Unreviewed; 308 AA. AC V4RPM0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36353.1}; GN ORFNames=CICLE_v10028901mg {ECO:0000313|EMBL:ESR36353.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36353.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36353.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36353.1; -; Genomic_DNA. DR RefSeq; XP_006423113.1; XM_006423050.1. DR GeneID; 18034082; -. DR KEGG; cic:CICLE_v10028901mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 208 304 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 208 304 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 308 AA; 34782 MW; BFF0AF3CFB2D5E40 CRC64; MAGSRATEPF RFFRVILPSI LEQKKLTPNG CVWQVGVTKD KGKILLDDGW HDFVKDHSIC VAYFLVFKYA KNSTFDVLIF DMTACEIDYA YHRGQPNKEK QNSIHDDKMQ CENSTKKLGS RASCKNQMHH SQGSFHRKRL LNGTAGNFSG PSSAAQDDHQ TEFVDGQALS ALLEEMGISI SRSCLSLEAE ERQRVITAAR LFEPRNPSFM VIVRGNERRK ACLFIPIKFV NNYLCKVPKF IKVQASDGRE WSIQTRYSHT GALHLSGGWP GFVVDINLDR GDICIFGLIK MDDVIMKVSV FSASKECK // ID V4RPM5_9ROSI Unreviewed; 228 AA. AC V4RPM5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36358.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10030007mg {ECO:0000313|EMBL:ESR36358.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36358.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36358.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36358.1; -; Genomic_DNA. DR RefSeq; XP_006423118.1; XM_006423055.1. DR GeneID; 18035586; -. DR KEGG; cic:CICLE_v10030007mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 96 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 96 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESR36358.1}. FT NON_TER 228 228 {ECO:0000313|EMBL:ESR36358.1}. SQ SEQUENCE 228 AA; 26095 MW; C87D99B00CA2D1EB CRC64; VNACSSSRVG SDHAESPRRI PPFFARKFGH ELTDAATLTL PNGRQSQVSL KKDGRNVWFR DGWHEFVEIH SITPGYFLVF KYEKNSRFQV HIFDTTACEI KYPCMSEESE NVKDEMVDSE DCVEISKRLF AQKSSKWNCK FGASLENSKV KYKCDPGSKK RKKEELAEKN ESDELDLCDS LGEMGIRVTK RRRISAEGRK RAIRIATSLK LKNPTFLVIL QPSDKNHA // ID V4RPX8_9ROSI Unreviewed; 147 AA. AC V4RPX8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36473.1}; GN ORFNames=CICLE_v10029882mg {ECO:0000313|EMBL:ESR36473.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36473.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36473.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36473.1; -; Genomic_DNA. DR RefSeq; XP_006423233.1; XM_006423170.1. DR GeneID; 18034852; -. DR KEGG; cic:CICLE_v10029882mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 147 AA; 17154 MW; 5A111619871BE40E CRC64; MVEKNESDDY DEFDLWASLE EMGMCIARKE RTVTKEESRR AVKIARSLRP KIPSFMVILQ SSDITHNAVY VPGKFANEFF SRDVKSIKIE DDKKREHTLS NNWRRNGGFV LLWAKLMRNN SLQKGDICIF DFVPRNDFLL KLSVFSG // ID V4RTA9_9ROSI Unreviewed; 710 AA. AC V4RTA9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10027839mg {ECO:0000313|EMBL:ESR37858.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR37858.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR37858.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR37858.1; -; Genomic_DNA. DR RefSeq; XP_006424618.1; XM_006424555.1. DR GeneID; 18035349; -. DR KEGG; cic:CICLE_v10027839mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 172 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 710 AA; 78940 MW; F8C48602FF7A705D CRC64; MEFDLNHAAT TEGEKIAFCN GDCGKNNSGC VCYLNSSSSS SSCSANSSSS SSLYSSIYFE LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASSSAFPPIE VPNFDLQPQI FCKVVDVQLL ANKENDEVYT QVALLPQPEL EGLNLEAKQL ENLGVDEEGG GRSPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GKDGELRLGI RRSVQPRNGL PDSILSKQNS YPNVLSVVAN AVSTKSMFHV FYSPRATHAD FVIPYQKYVK IIMNPICIGT RFKMRFEMDD SPERRCNGVV TGITDLDPYR WPNSKWRCLM VRWDECIGSD HQEQVSPWEI DRSVSLPPLS IQSSPRMKKL RTGLQAPPPD YPVSARGGGV LDFEESVRSS KVLQGQENVG FVSPLCGCDT VNHPLGFEMR APAHQSLALN GIRKDNINEL VRARPTSYTG FVESNRFPKV LQGQEICPLR SLTGKVDLNL GTWGKPNFGC NSMNMYQASK PNIYPPPSES LSNMFFPYGD MPKTVQHHTM RPYASNLQRE NVKLNSSSIQ MPAIGAEIRK ENLLNEHKPV ENIPTPTFKA NMTSHKDGSF NGTAAGCKLF GFSLTSETPT PSSQSPGKRS CTKVSYVRIK IGKNLPIFNF CLFLLLMMFH // ID V4S779_9ROSI Unreviewed; 354 AA. AC V4S779; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36282.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10030084mg {ECO:0000313|EMBL:ESR36282.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36282.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36282.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36282.1; -; Genomic_DNA. DR RefSeq; XP_006423042.1; XM_006422979.1. DR GeneID; 18033697; -. DR KEGG; cic:CICLE_v10030084mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 39 130 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 39 130 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 290 338 {ECO:0000256|SAM:Coils}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESR36282.1}. SQ SEQUENCE 354 AA; 40193 MW; 1C3A9354D584E691 CRC64; EKRKRSTYDN LYDNEEVKNA VMKQANDIQA NLDPQFPSFI KFMLRSHVTG GFWLGLSRKF CTDNLPKQDT MIVLEDESGS EYDTKYLVEK IGLSAGWRGF SIAHKLVEGD ALVFHLVTPS KFKVYIVRSR GSDEVDCALG LLKLETCNQQ VESEQSEDES KDLGSEVLNG LKFCESVVDF KEVKSFQDFS IVVNDLVIDS ALSKYLRTKY YELCCSQNSF LHNSVLDGLN CKLISGMISE TINITDAIRA SKLTTPHDNF DTWDKTLKAF KMMGMNVGFL LIRLDQLMNL ASTSKRLQEA RLERANAKEE KSALELKLSE VRERIDRLDS EIEALGANPN NLDVMFQEMA KAPW // ID V4S7D7_9ROSI Unreviewed; 354 AA. AC V4S7D7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36347.1}; GN ORFNames=CICLE_v10028642mg {ECO:0000313|EMBL:ESR36347.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36347.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36347.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36347.1; -; Genomic_DNA. DR RefSeq; XP_006423107.1; XM_006423044.1. DR GeneID; 18033923; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 250 345 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 250 345 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 354 AA; 40944 MW; 5E4E85190E4FBD51 CRC64; MPRPYFHKLI LASTIRDKRL RIPENFVRNF KDDLSAAATL IVPNGMVSRV GLRRLDNKVW FYDGWQEFME RYFIRIGYFL VFRYEGNSAF NVYIFNLPSS EINYQPNALS NFEVPNHSKQ YHIFAEMEDD DSEHVDQPTV NKTFNPPSFQ NLLNSSKLSN SINGAGEANL QRLKVKLYSQ DGETPKLKKP GRKRKIDPNV QASSAQEVHD GEMQFRFYES ASARKRTVTA EERERAINAA KAFEPSNPFC RVVLRPSYLY KGCIMYLPSC FAEKHLNGVC GFIKLQLSDG KQWPVRCLYR GGRAKFSQGW YEFTVENRLG EGDVCVFEVL RAREFVLKVT VFRVSESAGF MSRH // ID V4S7E1_9ROSI Unreviewed; 173 AA. AC V4S7E1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36352.1}; GN ORFNames=CICLE_v10029384mg {ECO:0000313|EMBL:ESR36352.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36352.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36352.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36352.1; -; Genomic_DNA. DR RefSeq; XP_006423112.1; XM_006423049.1. DR GeneID; 18035596; -. DR KEGG; cic:CICLE_v10029384mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 173 AA; 20141 MW; 1C074D9F801A3EDC CRC64; MAESITAEPF RFFKIIEETL QDKKLRIPVD FVKKFGDELC DVATLRVPNG CVWKVGLTRE GRKIWFNDGW HDFVKNHSIL KDYFLVFEYA KNSTFDVLIF DKTACEIEYT CAEPENEKQN DGKKIKPRKV AYEDEYKFVA VLEEMGICIS GAYKFLSVEE RQRIICASRL VSA // ID V4S7Q7_9ROSI Unreviewed; 359 AA. AC V4S7Q7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36472.1}; GN ORFNames=CICLE_v10029988mg {ECO:0000313|EMBL:ESR36472.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36472.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36472.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36472.1; -; Genomic_DNA. DR RefSeq; XP_006423232.1; XM_006423169.1. DR GeneID; 18034565; -. DR KEGG; cic:CICLE_v10029988mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 267 359 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 267 359 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 359 AA; 41392 MW; 22A721D6A4D0B797 CRC64; MAFRRRAEPK MASSMKKTNS LFFQVILAVT IEDKKMKIPQ NFVGRFGDEL SYVATLTNPK GYVVRIGITK KEGKIWFDDG WNEFVQYHSI GVGYFVVFQY RKNSKFQVFV FNTTTFEIQY PSRNMFPPSR QNQATVNSSK SKNGCKMQSK TYRMEELEVN DELDNVNDSI QDIIGTSNSE GSVHAKVHLS ETQCLSVQET DLKIDSTKFK KAKHNLKYEL RADSVDQIKS IALLEDMDTY DCESRMTLEE KQEAINVARF LKPEKPSFLV FLRASNMQLN CVYVPNSFAR KYFNGEECVT IQDSDGRKLA VKVKVSCSKC LLTRWGKFFK KTNVKEGDIL FFEMIQMKNI LLKVSVFNA // ID V4S969_9ROSI Unreviewed; 305 AA. AC V4S969; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR44058.1}; GN ORFNames=CICLE_v10012300mg {ECO:0000313|EMBL:ESR44058.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR44058.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR44058.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536861; ESR44058.1; -; Genomic_DNA. DR RefSeq; XP_006430818.1; XM_006430755.1. DR GeneID; 18039984; -. DR KEGG; cic:CICLE_v10012300mg; -. DR KO; K09287; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 32 87 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 164 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 32 87 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 164 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 305 AA; 34608 MW; B0DDBB6E16F682A5 CRC64; MASNSSSVDL DHDHNLSENG IDAESKKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF IEEEEAARVY DTAALRFRGQ NAITNFRTSL ETDDEDDYME KIFLSSHSKA EIVDMLRKHT YKHELEQSKQ NYACVGISCY NNSSGFSDLF GSNCFQETPV EFLFEKVLTP SDVGKLNRMV IPKQQAEKHF ALSSEIASKG VLLNFEDSTQ KVWRLRYCYW SSSQSYVLTK GWSRFVKEKG VKAGDTVSFW RSIVGSNSKL FIDCKLQQNG NGSGFEEMQS QVPNIGVVRL FGVNILEDPN NLCCR // ID V4SA37_9ROSI Unreviewed; 253 AA. AC V4SA37; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR37317.1}; GN ORFNames=CICLE_v10029114mg {ECO:0000313|EMBL:ESR37317.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR37317.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR37317.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR37316.1; -; Genomic_DNA. DR EMBL; KI536978; ESR37317.1; -; Genomic_DNA. DR RefSeq; XP_006424076.1; XM_006424013.1. DR RefSeq; XP_006424077.1; XM_006424014.1. DR GeneID; 18035255; -. DR KEGG; cic:CICLE_v10029114mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 58 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 152 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 58 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 152 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 253 AA; 29762 MW; 82981D0E5CA643EB CRC64; MVPNGRVWRV KLMKDGRRVS FGDGWQDFVA SNSISVGYFL VFRYEKNSTF QVLIHDMTAC EIDYPYSDEE SDEWSSEFED DMESEECVEI SKELFSSKCR CQSQKKSKVK GLFRNLLENM GMYISEKSED FTVEESERAI KIVRSLKLKD PSFMVIFRKR EKPCREVYVP ASFAYRFVNQ NVKSIKLRGS NAELNLPRSD KSVRIWWRDN GGFYLTRGWM KFSTHKNLKD GDICIFKLID RKDVLLELSV FRA // ID V4SAN5_9ROSI Unreviewed; 113 AA. AC V4SAN5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR44603.1}; GN ORFNames=CICLE_v10003967mg {ECO:0000313|EMBL:ESR44603.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR44603.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR44603.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR44603.1; -; Genomic_DNA. DR RefSeq; XP_006431363.1; XM_006431300.1. DR GeneID; 18041748; -. DR KEGG; cic:CICLE_v10003967mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 113 AA; 12978 MW; 92E553B833D44450 CRC64; MEVYSKILTE TDVSTRLAVE SNTIDEFFLA FEAGQYSQNL VVEDENGERW PFRLFIRQGP YRKPTISAGW RCFVMSKQAE VGDQVVFIKE RAGAIGSAFR YKIRVSKTTE AIR // ID V4SAY2_9ROSI Unreviewed; 682 AA. AC V4SAY2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10000491mg {ECO:0000313|EMBL:ESR44683.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR44683.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR44683.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR44683.1; -; Genomic_DNA. DR RefSeq; XP_006431443.1; XM_006431380.1. DR GeneID; 18040560; -. DR KEGG; cic:CICLE_v10000491mg; -. DR KO; K14486; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 558 651 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 682 AA; 75901 MW; 6E04E5349330E098 CRC64; MAFAAAAAPL NHASGGPRTG GSNDALYREL WHACAGPLVT LPREGERVYY FPQGHMEQLE ASMHQGLEQQ MPSFNLPSKI LCKVVNVQRR AEPETDEVYA QITLLPEPDQ SEVTSPDPPI PEPEKCTVHS FCKTLTASDT STHGGFSVLR RHADDCLPPL DMSQQPPWQE LVATDLHGNE WHFRHIFRGQ PRRHLLTTGW SVFVSSKKLV AGDAFIFLRG ENEELRVGVR RHMRQQTNMP SSVISSHSMH LGVLATASHA IATGTLFSIF YKPRTSRSEF IVSVNKYLEA KRHKLSVGMR FKMTFEGEEV PERRFSGTIV GVGDCRSSVW QDSEWRSLKV QWDEPSSILR PERVSSWELE PLVATTTTTN AQPAQRNKRS RPPVLPSPAA DISVLGMWKS HVESSAFSYC DSPQGRDLYP SPKFSTATKG NHFGLSGNKS LAAVSSNSMY WPNRAENVTE SFAPVVNKEC SEKRQGNGNT CRLFGIQLVD NSNVEEASPA FTMSGAMGDD RAIPCLDADS DQHSEPSNIN RSDVPSVSCD AEKSCLRSPQ ESQSRQIRSC TKVHMQGIAV GRAVDLTRFD CYEDLLKKLE EMFDIEGDLC GSTKKWQVVY TDDEDDMMMV GDDPWHEFCS MVRKIFIYTA EEVKKLSPKV KLPGNEELNA GKPDVEVVVN TDDRSSIVGP GC // ID V4SAZ2_9ROSI Unreviewed; 547 AA. AC V4SAZ2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=CICLE_v10003317mg {ECO:0000313|EMBL:ESR44698.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR44698.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR44698.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR44698.1; -; Genomic_DNA. DR RefSeq; XP_006431458.1; XM_006431395.1. DR GeneID; 18040264; -. DR KEGG; cic:CICLE_v10003317mg; -. DR KO; K14486; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 547 547 {ECO:0000313|EMBL:ESR44698.1}. SQ SEQUENCE 547 AA; 60682 MW; 1CABCBEB42610453 CRC64; MSFAAAAVPL NHASGGGSND ALYRELWHAC AGPLATLPCE GQRVYYFPQG HMEQLEASMH QELEQQMPSF NLPSKILCKV VNVQRRAEPE TDEVYAQITL LPEPDQSEVT SPDPPIPEPE KCTVHSFCKT LTASDTSTHG GFSVLHRHAD DCLPPLDMSR QPPWQELVAT DLHGNEWNFR HIFRDQPRRH LLTIGWSVFV SSKKLVAGDA FIFLRGENEE LRVGVRRHMR QQTNMPSSVI SSHSMHLGVL AIASHAIATG TLFSIFYKPR TSRSEFIVSV NKYLEAKKHK LSVGMGFKMT FEGEEVPEQR FSGTIVGVGD CKSSVWPDSE WRSLKVQWDE PSSILRPDRV SSWELEPLVA TTTTTNAQPA QRNKRSRPPV LPSPAAWDEP SSILRPDRVS SWELEPLVAT TTTTNAQTAQ RNKRSRPPVS PSPAADISVL ENLTESFAPV VNKESSEKRQ GNGNTCRQFG IPHIDNSNVE EASPAFTMSG AMGDDRAIPC LDADSDQHSE PSNINRSDVP SVSCDAEKSC PRSPQESQSR QIRSCTK // ID V4SBC2_9ROSI Unreviewed; 724 AA. AC V4SBC2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10027901mg {ECO:0000313|EMBL:ESR37797.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR37797.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR37797.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR37797.1; -; Genomic_DNA. DR RefSeq; XP_006424557.1; XM_006424494.1. DR GeneID; 18035603; -. DR KEGG; cic:CICLE_v10027901mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 612 692 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 724 AA; 79527 MW; 2076153431D371AF CRC64; MKEVEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS SRIPPLIFCR VSSLKFLADS ETDEVYAKIK LVPIPANEID FEDNNLSLNS VGSDSESEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RAQDGDLCVG IRRAKKGIGG GNESPSSGWN SNNGSCVTGN PFGGFSCFLR EEENKMARNG NMNLNSYGSF NSSGNMRGNG GRVKPEMVLE AVALAASGKP FEVVYYPRAS TPEFCVKASA VKAAMRVHWL CGMRFKMAFE TEDSSRISWF MGTISSVQVA DPISWPNSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIHLSPFSP ARKKLRLPQQ LDFPFDGQFT MPLFSGNPLG PSSPLCCLSD NTSAGIQGAR HAQFGISSSD FHVNNKLQSG LFLSSLQRFT PNSRDSDGIL TSHTNSSENL SCLLTMGNSN QNLEKSENIK KHQFLLFGQP ILTEQQISHS CSDDVVSQVL GKSSSDGHSD KVKASSDGSG SIHEQRISIE KSSSSEFFWN RSFQVTESGL DTGHCKVFLE SEDVGRTLDL SVLSSYEELY RRLAIMFGIE RSDMLSHVLY QDASGAIKRT GDEPFSDFMK SAKRLTILMG SGSDSVGRTW ITGMRTPKNG LDASNKTGPL SIFA // ID V4SBX5_9ROSI Unreviewed; 180 AA. AC V4SBX5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36325.1}; GN ORFNames=CICLE_v10029372mg {ECO:0000313|EMBL:ESR36325.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36325.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36325.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36325.1; -; Genomic_DNA. DR RefSeq; XP_006423085.1; XM_006423022.1. DR GeneID; 18034100; -. DR KEGG; cic:CICLE_v10029372mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 180 AA; 20257 MW; 29613461E4BBBAD1 CRC64; MEKKWENQGH AAPCFYHVIL DGKVPQIPQE FLKHISKESS DKATLTVQGS ARSWTVKLSE TGIGVFLQDG WLKFLRDNSL GDSEFLLFTY DGNMCFSVQI FNKNGCERIV AASDQVRMNQ EFVGFTNGTG KGLPSQKSNK PKSMRKKKNL NCMVKSGFNV QASQTRENQD GRPKMKKPAM // ID V4SBZ3_9ROSI Unreviewed; 385 AA. AC V4SBZ3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36345.1}; GN ORFNames=CICLE_v10028642mg {ECO:0000313|EMBL:ESR36345.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36345.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36345.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36345.1; -; Genomic_DNA. DR RefSeq; XP_006423105.1; XM_006423042.1. DR GeneID; 18033923; -. DR KEGG; cic:CICLE_v10028642mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 376 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 376 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 385 AA; 44572 MW; 8EAFA07B4A5956EC CRC64; MPRPYFHKLI LASTIRDKRL RIPENFVRNF KDDLSAAATL IVPNGMVSRV GLRRLDNKVW FYDGWQEFME RYFIRIGYFL VFRYEGNSAF NVYIFNLPSS EINYQPNALS NFEVPNHSKQ YHIFAEMEDD DSEHVDQPTV NKTFNPPSFQ NLLNSSKLSN SINGAGEANL QRLKVKLYSQ DGETPKLKKP GRKRKIDPNV QASSAQEVHD GEMQFRFYES ASARKRTVTA EERERAINAA KAFEPSNPFC RVVLRPSYLY KGCIMVSCRI SITLHCFSVS RDNMLDVRCI YFLLLQYLPS CFAEKHLNGV CGFIKLQLSD GKQWPVRCLY RGGRAKFSQG WYEFTVENRL GEGDVCVFEV LRAREFVLKV TVFRVSESAG FMSRH // ID V4SBZ9_9ROSI Unreviewed; 231 AA. AC V4SBZ9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36350.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10030034mg {ECO:0000313|EMBL:ESR36350.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36350.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36350.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36350.1; -; Genomic_DNA. DR RefSeq; XP_006423110.1; XM_006423047.1. DR GeneID; 18034633; -. DR KEGG; cic:CICLE_v10030034mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESR36350.1}. SQ SEQUENCE 231 AA; 26626 MW; 134C49386255ABDE CRC64; RIPRKFVKRF GDELSAVATL NVPNGRVWQV GLRKDGRKIW LQDGWDNFAE YHSIAVGYFL VFKYAKNSTF DVLVFDMTAC EIDYPYDYEE TESEEGDEME TENSVEILSF TKMNTPPVQQ NQVKPGSKPE KKKIGGIKLE TATNSREKKR CPTHGNEHGK LKKAAYHEVE TDSSDGDQVF EEMGIFMSEG HRYLSVEERQ SLVTAVRLFK PQNPSFVDIL RSKKRYSYML S // ID V4SC07_9ROSI Unreviewed; 290 AA. AC V4SC07; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36360.1}; GN ORFNames=CICLE_v10030217mg {ECO:0000313|EMBL:ESR36360.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36360.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36360.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36360.1; -; Genomic_DNA. DR RefSeq; XP_006423120.1; XM_006423057.1. DR GeneID; 18034613; -. DR KEGG; cic:CICLE_v10030217mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 195 290 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 290 AA; 33544 MW; EE04F844B2524DA3 CRC64; MIPPLFAIKF GHELTNAATL TLPNGRQSQV SLKKDGRNVW FRDGWHEFVE IHSITPGYFL VFKYEKNSRF RVHIFDTTAC EIKCPCMSEE SENVKDEMVD SEDCVEISKR LFAQKSLKWN CKFGASLENS KVKYKCDPGS KKRKKEELAE KNESDELDLC DSLGEMGIYV SKRCRISAEG KKRAIRIARL LKLKNPTFMV ILLPRDKHYA YVPAKFANEF FSRDAQSVKV QVLNETERSL HIHWRHKGGF FLSKGWAELS KDKKLAEGDI CVFQLIRKED VLLKLSIFHA // ID V4SDL0_9ROSI Unreviewed; 258 AA. AC V4SDL0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36920.1}; GN ORFNames=CICLE_v10030264mg {ECO:0000313|EMBL:ESR36920.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36920.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36920.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36920.1; -; Genomic_DNA. DR RefSeq; XP_006423680.1; XM_006423617.1. DR GeneID; 18034066; -. DR KEGG; cic:CICLE_v10030264mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 78 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 219 258 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 78 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 219 258 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 258 AA; 29428 MW; 559157905CFF44DE CRC64; MIPQEFVRKF GHELSAVATL AVPNGCVWRV GLTKDEGSIW FQNGWHAFVE YHSISAGYFV VFRYRKNSSF QVFILDNLTY CGIQYPSRNS CTPPKHNGYE MQGEKPRMEG IEEKNQPDNM NESMQDEIDI IKLLEDMRIC VCESMKVLSV KERQAAIEAA RSIKPEKPSF LVVLQTRNMM EHVVYVPATF AQKYLSGDSH VVVQDSRGGS KLATEMKSSS GWLGFFEENH VTEGDILILE MIKKKNKNIL LKVSVVYT // ID V4SDP1_9ROSI Unreviewed; 316 AA. AC V4SDP1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36950.1}; GN ORFNames=CICLE_v10028858mg {ECO:0000313|EMBL:ESR36950.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36950.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36950.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36950.1; -; Genomic_DNA. DR RefSeq; XP_006423710.1; XM_006423647.1. DR GeneID; 18034535; -. DR KEGG; cic:CICLE_v10028858mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 218 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 218 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 37102 MW; EFA5E675AD4A6EB6 CRC64; MTERAAATWL FEQQWRKRLN PGADVSSPHF FKIIFPFVLA EKKLRIPRDF VKKFGHELSN GAQLTVPDGS VWQVALTRKG KDIWFHYGWE DFVESYSISA GYFLFFSYEK NSTFHIIIFN LDACEVDYLY VGEESMKDEQ NSDPENEKSV EHVEQQSRKR KMEEVAEMDE PNSDNNFNLS VVLKKMGIYV TPRYRRFSAE ESKRAISFAR IVQPKNSSFM VILEQHFKSC RDVYCPIKFA AKFVKKDSKY VKVQISNEVK ESIELQWKPK GGFFLTRGWA KISRVKNLKE GDICIFELIR KQDLLFKLSV FHSMLE // ID V4SGZ9_9ROSI Unreviewed; 265 AA. AC V4SGZ9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36281.1}; GN ORFNames=CICLE_v10029072mg {ECO:0000313|EMBL:ESR36281.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36281.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36281.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36281.1; -; Genomic_DNA. DR RefSeq; XP_006423041.1; XM_006422978.1. DR GeneID; 18033874; -. DR KEGG; cic:CICLE_v10029072mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 6 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 265 AA; 30640 MW; 6F249860E98786A4 CRC64; MVESKLTYEE CRRQRMEENK KRMEELKLNV LARSLKTPVS KPSPVKKRVS KPKPASAPVR RSSRVADKPP PNYNEDPFEP FLTRRRLTCR SYQRRNLLNR VYASDEERAS AIDRADEVQS GLDSQYPSFV KPMLQSHVTG GFWLGLPVHF CKEHLPHSDE IVTLVDEEEN EFPTKYLAEK TGLSGGWRGF SIDHELVDGD CLVFQLIKPA TFKVYIIRVY VSEFNDDNND VNKKNEKNNK ENKEDSSARI TRSAKRTRSS NLFKS // ID V4SH51_9ROSI Unreviewed; 273 AA. AC V4SH51; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36346.1}; GN ORFNames=CICLE_v10028642mg {ECO:0000313|EMBL:ESR36346.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36346.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36346.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36346.1; -; Genomic_DNA. DR RefSeq; XP_006423106.1; XM_006423043.1. DR GeneID; 18033923; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 169 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 169 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 273 AA; 31163 MW; 3FB5F52A989F8563 CRC64; MPRPYFHKLI LASTIRDKRL RIPENFVRNF KDDLSAAATL IVPNEMEDDD SEHVDQPTVN KTFNPPSFQN LLNSSKLSNS INGAGEANLQ RLKVKLYSQD GETPKLKKPG RKRKIDPNVQ ASSAQEVHDG EMQFRFYESA SARKRTVTAE ERERAINAAK AFEPSNPFCR VVLRPSYLYK GCIMYLPSCF AEKHLNGVCG FIKLQLSDGK QWPVRCLYRG GRAKFSQGWY EFTVENRLGE GDVCVFEVLR AREFVLKVTV FRVSESAGFM SRH // ID V4SH65_9ROSI Unreviewed; 349 AA. AC V4SH65; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36361.1}; GN ORFNames=CICLE_v10028745mg {ECO:0000313|EMBL:ESR36361.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36361.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36361.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36361.1; -; Genomic_DNA. DR EMBL; KI536978; ESR36362.1; -; Genomic_DNA. DR EMBL; KI536978; ESR36363.1; -; Genomic_DNA. DR RefSeq; XP_006423121.1; XM_006423058.1. DR RefSeq; XP_006423122.1; XM_006423059.1. DR RefSeq; XP_006423123.1; XM_006423060.1. DR GeneID; 18034239; -. DR KEGG; cic:CICLE_v10028745mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 257 349 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 257 349 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 349 AA; 40414 MW; B83C0CF42549DC38 CRC64; MPSSMKKTYP HFIDVILDST IEDKKMKIPQ NFVGRFGDEL SNVATLTNPE GYVMRVGITR KDGNIWFDGG WNEFVEDHSI DVGYFVLFQY RKNSKFRVFI YNTTTCEIQY PSRNTFPPPR QNQATFDGSK SKNGCEMRGK TYRMEEVKVK EESDNVNDSM QDVIGTCNSE GSVHAKIHLS ETQCSSVQET DLKIDSTKFK KAKHNLKDEL RADSVDRVKL FALLEDMDIH ICESRMTLEE RQEAINVARL LKPEKPSFLV FLRASNMQLN YVYVPTSFAR KYLNGEECVT VQDSDGRKLA VKVKQSRRKY LLTRWGKFFK KTNVKEGDIL FFEMIQMKKI LLKVSVFNA // ID V4SH70_9ROSI Unreviewed; 321 AA. AC V4SH70; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36366.1}; GN ORFNames=CICLE_v10028843mg {ECO:0000313|EMBL:ESR36366.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36366.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36366.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36366.1; -; Genomic_DNA. DR RefSeq; XP_006423126.1; XM_006423063.1. DR GeneID; 18035494; -. DR KEGG; cic:CICLE_v10028843mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 99 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 6 99 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 36519 MW; EAFE9362FEFA3DC5 CRC64; MAKCIPGFFK VYLPEKSSNR LHIPDAFIAH LSPSKPEKVM LINHIGEYWH VDVAYCDKGV FFLDGWQKFV KDNSLETADI LVLKYDGDCW FNVKIMGKSG IEKTESYKED LWVEDEEEET EEEEKGGEEA EEDCKDDCVF EFGDNDSAAD KDYIEEEDDD DEMTAITSCR GRINIGKSKK RAVAKAGGSK AVYDINLLEV DVGDYGLYPN PYFVSKAWAG TRKNYLHVPS HVLKDLGLKL AKKITILDER GYSFHGQLDI WKDGRQGIKG WSAFCRAKKL KKDDICICEF THSRKMQNTI KVHIVQGVGS QSKAKRSRSK N // ID V4SIM0_9ROSI Unreviewed; 80 AA. AC V4SIM0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36891.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10030278mg {ECO:0000313|EMBL:ESR36891.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36891.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36891.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36891.1; -; Genomic_DNA. DR RefSeq; XP_006423651.1; XM_006423588.1. DR GeneID; 18035281; -. DR KEGG; cic:CICLE_v10030278mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 80 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 80 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESR36891.1}. SQ SEQUENCE 80 AA; 9110 MW; 58083FA272C9D74D CRC64; YAPARFAYQY VDEDSKSVEV QAPSGRKWSL GIHWRATGGF FLAKGWAGVS DYVHLTEGDI CIFELVKHPD VVFKLHVFHQ // ID V4SJL3_9ROSI Unreviewed; 309 AA. AC V4SJL3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR39040.1}; GN ORFNames=CICLE_v10026137mg {ECO:0000313|EMBL:ESR39040.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR39040.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR39040.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536925; ESR39040.1; -; Genomic_DNA. DR RefSeq; XP_006425800.1; XM_006425737.1. DR GeneID; 18036097; -. DR KEGG; cic:CICLE_v10026137mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 206 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 206 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 35165 MW; 9754809C568A202D CRC64; MVRPARRKSS PSDKSTDSEF FKVYLPAFSS KQLAIPPAFA KHLNVTVPKH VIIRDYAGRQ WRGKMEEVEG VIVIKDCWER FACVHSLELG DFLVFKYNGS SLFDVKIYGI NGCLKEGTNT THHKKETPIA DMNAIPVKKE IGREAEQTSI MDDPSCNQDD LEIMLISSGK RGGSSVASRV KTRLRDEKDT GEDRAFKAAR LVVPKNPHFV SVFSQYSRYA VNVSVRVVRS HGIKLEPEMM LRDQNGRKWP VKISFRTNGR IVITGGWSDF WREQKLEAGD KCVFEFVLTR GNMSKEMKVQ VVRKMKTCL // ID V4SJT6_9ROSI Unreviewed; 516 AA. AC V4SJT6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR39110.1}; GN ORFNames=CICLE_v10025376mg {ECO:0000313|EMBL:ESR39110.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR39110.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR39110.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536925; ESR39110.1; -; Genomic_DNA. DR RefSeq; XP_006425870.1; XM_006425807.1. DR GeneID; 18036633; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 144 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 459 486 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 516 AA; 57404 MW; 4BD8F2216BE28594 CRC64; MDLELEVKKE VVDEHVNTTS HRSEAARPTD DEEATIAQLS LLPASSKPKR KRKPKTIFSA DEPMKPSKKK GKIILKLKKS PPDTSVTSVP GTVEPDSRGG GKTKSSKKNK DVVDGKCSPV EPKSPAMIRA EEVQSNLEPQ FPSFAKSMVR SHVASCFWMG LPGYFCKSHL PDKDTSVVLE DESGIQYTAK YFAEKTGLSA GWRQFSTAHN LVEGDVLVFQ LIAPLKLKVY IIRANDFTEV DGALGLLNLD APSKQNDTAE LEIDNGEPIV VTNQNTKKKR KKSLPLAVVQ KKNKKSVQGR SASNLGQPAE QSENDSEEVG SEVLEGFKIS TPPVQFKDVT SLDNFNILVD GLVVDSELPE DIRCNYYKLC CSQNAFLHEN LAQGINFKLI VGTISEIVNI ADALRACKFT TSRDEFAMWD KTLKAFELLG MSVGFLRARL RRLQRLAFES EGAEDTRRYI EAKAQQSQTQ DEIRNIEARL VELKGAWQRF DAEISSLKSS AESYELKFRE VANAPW // ID V4SK70_9ROSI Unreviewed; 554 AA. AC V4SK70; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR48123.1}; GN ORFNames=CICLE_v10000881mg {ECO:0000313|EMBL:ESR48123.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR48123.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR48123.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR48122.1; -; Genomic_DNA. DR EMBL; KI536799; ESR48123.1; -; Genomic_DNA. DR RefSeq; XP_006434882.1; XM_006434819.1. DR RefSeq; XP_006434883.1; XM_006434820.1. DR GeneID; 18042612; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 434 530 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 434 530 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 554 AA; 62417 MW; E4B4DB883C93D9AA CRC64; MDNQPGMLYF RRPCFFNIFS SNLSAECLKL PLQFVRHMEG RTSGSVTLIG PSWDTWHIDL IQQDDNLFFD KGWPVFLRDN FIECGDLLVF RYDGELHFTV QIFDQSGCEK EAAFNSKSTS TGQKREREEA VAHSDKALQS LLKKIRECSS SFESDCIDDN RDREADSCEE TRRCLSLSTI FASPSQPKTC NIKPEDEEKK VAQSFISAFP YFVRKMKRFN VSGSYTLNIP YQFSMAHLPN FKTEVVLHNL KGASWTVNSV PTTKVHTSHT FCGGWLAFVR GNEIKLGDIC IFELVHKCEL HVYILRVGKQ YPDSQRGTTV LTGSNVSSTT ISCKQFDGVP KKVKKNSLKK IQLCNVKGSK SCEIKKHIGT DGNSVSIATC CLPKISHEKS EAAAQNRNNV EAKMDSTPGG NLRTMMALDE EKAARSFNSC VPHFVRIMRK FNISGSYTLK IPYKFAMAHL PDCKTEIVLR NLKGECWTVN SLPDSKGRMV HTFCGGWMAF VRGNDIKIGD VCIFELISKL DMRVHITGVG RKEVDLESGK LTSNESSTVD HPLF // ID V4SMW1_9ROSI Unreviewed; 703 AA. AC V4SMW1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10011194mg {ECO:0000313|EMBL:ESR42017.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR42017.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR42017.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536861; ESR42017.1; -; Genomic_DNA. DR RefSeq; XP_006428777.1; XM_006428714.1. DR GeneID; 18039094; -. DR KEGG; cic:CICLE_v10011194mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 617 697 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 703 AA; 77618 MW; 5268AE95D6984662 CRC64; MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVNSRV FYFPQGHAEH ACGPVDFRSC RRIPPYILCR VSAIKFMADP ETDEVYAKIK LVPVSNNDPD FDNDDGIAGI HSNETQDKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PEVTSGWNGN CVTPYGGFSA FLREDDNKLM RNGIGNVNGP SSNNGNNLMA KGKVRPESVI EAATLAANRQ PFEVVYHPRA STPEFCVKAS MVKAALQIRW CSGMRFKMAF ETEDSSRISW FMGTISSVQV SDPLYWPDSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKSRLPQ PPDFPLDGQL PMPSFSGSLL GPNSPFGCLP DNTPAGMQGA RHAHYGLSLS DLHLNKLQSG LSPAGFPPFD RAAKPTRASN SPILQKPSMS ENISCLLTMS HSTQPSKKAD DLKTPQLVLF GKPILTEQQM SHSCSGDTVS PVRTGNSSSE GNLDKLTNFS DGSGSALQQQ GLPDRSFCEV FQWYKDNRQE TEPSLETGHC KVFMESEDVG RTLDLSLLGS YDELYKKLAE MFGIENAETL SHLLYRDVTG AVKHIGDEPF SDFMKTARRL TILMDSGSDN VGV // ID V4SPI5_9ROSI Unreviewed; 694 AA. AC V4SPI5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10030860mg {ECO:0000313|EMBL:ESR49673.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR49673.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR49673.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR49673.1; -; Genomic_DNA. DR RefSeq; XP_006436433.1; XM_006436370.1. DR GeneID; 18045713; -. DR KEGG; cic:CICLE_v10030860mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 608 688 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 694 AA; 76002 MW; 4CCADEAEC41A7DE3 CRC64; MITVMDSAKD AMKKNPTGES CLDSQLWHAC AGGMVQMPQI NSKVFYFPQG HLEHAKGNVE LPNFNIPSMI PCRVTAIKFM ADAETDEVYA RIRLIALKSN GFDDFEDVGF DGNGGIGNES SEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA EPPVQTILAK DVHGEVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKK GGIGGGSDYS VGWNSGGGNC GFPFGGYSGY MREDENKSSR RNSSSDLRGR VRAESVTEAA ALAANGQPFE VVYYPRASTP EFVVKASAVR AAMQIQWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNIPA IHLSPFSPAR KKLRLPEHSD FSLINQLPTP SFTRNPLVTS SPFCCISDNI PAGIQGARHA QYGLSSSDLH FNKLQSSLFP LGFQQLEHTT RPARVSSANF MSETGNSKNI SCLLTMGNPT QSFKDNIEVK TPHIILFGQL ILPQQNSSQS CSGDTIVNSL SDGNPEKTAI SSDGSGSAVH QNGPLENSSD EGSPWCKDHK KSDLGLEMGH CKVFMESEDV GRTLDLSVLG SYEELYGKLA NMFGIESAEM FSNVLYRDAA GSVKHTGDEP FSEFLKTARR LTILTDSGSD SVGR // ID V4SPQ6_9ROSI Unreviewed; 373 AA. AC V4SPQ6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR39111.1}; GN ORFNames=CICLE_v10025376mg {ECO:0000313|EMBL:ESR39111.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR39111.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR39111.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536925; ESR39111.1; -; Genomic_DNA. DR RefSeq; XP_006425871.1; XM_006425808.1. DR GeneID; 18036633; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 144 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 316 343 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 373 AA; 41690 MW; C7B66A5336D587F6 CRC64; MDLELEVKKE VVDEHVNTTS HRSEAARPTD DEEATIAQLS LLPASSKPKR KRKPKTIFSA DEPMKPSKKK GKIILKLKKS PPDTSVTSVP GTVEPDSRGG GKTKSSKKNK DVVDGKCSPV EPKSPAMIRA EEVQSNLEPQ FPSFAKSMVR SHVASCFWMG LPGYFCKSHL PDKDTSVVLE DESGIQYTAK YFAEKTGLSA GWRQFSTAHN LVEGDVLVFQ LIAPLKLKVY IIRANDFTEV DGALGLLNLD APSKQNDTDA LRACKFTTSR DEFAMWDKTL KAFELLGMSV GFLRARLRRL QRLAFESEGA EDTRRYIEAK AQQSQTQDEI RNIEARLVEL KGAWQRFDAE ISSLKSSAES YELKFREVAN APW // ID V4SQ52_9ROSI Unreviewed; 890 AA. AC V4SQ52; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR42817.1}; GN ORFNames=CICLE_v10011039mg {ECO:0000313|EMBL:ESR42817.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR42817.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR42817.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536861; ESR42817.1; -; Genomic_DNA. DR RefSeq; XP_006429577.1; XM_006429514.1. DR GeneID; 18038300; -. DR KEGG; cic:CICLE_v10011039mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 301 402 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 566 616 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 301 402 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 890 AA; 97681 MW; 329EE8EB4E35C933 CRC64; MESRTCMNGK CRASSSIEWR KGWPLQSGGF AVLCDKCGSA FEKLIFCDEF HSKDSGWRKC ASCSKRLHCG CIASLSLIQL LDGGGVWCIN CAKNPGLDSI PGDDPNGFGT LKTDNAGDLP STSVDNQLGG SDDKFKLLQL GNSSESVGLR HLLQFRNDDL DGSFRKVKPE EAAKSDISKA NIGAKDIYGP LAHTNLSITL GSPGINSNSF PSAVVDEKEH SKTSAIIHQG PKSRHLLPKP PKLALATGSE ANAGISQIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQLS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK ASNAVSVQDT QPSAIPNGGH SSESFFSGVF ENLSILSGYS GVLQSLKGST DPHLSSLSKQ LNSPPGDINW VKSEKHEDKT REGLLPPSML VPERKRSRNI GSKRKRLLID RLDVLELKLT WEEAQDMLYP PPSVMPSIVT VEDHVFEEYE DPPVFGKRSI FIVRTSGGQE QWAQCDGCSK WRRLPVDVLL PPKWTCMDNV WDHNRCSCSA PDELTPREVE NLLRLNKDFK KRKIATSHRL NQEHEPSGLD ALSNAAILGE NMGDPGTASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCLVCMTV KRRFKTLMMR KKKRQSEREE EVAQRNQPTW GPKEEAEVDS SSKHVSSHLD PSENEARSAN ELESKGQNNN LSGKLAESSK AELDLNCHPE REEAQAGLNR VSMMKLLQVA SHPLETYLKQ NGLTSLTSDQ QASSGTLAPP QAAGESEGQL NELASATQER ESGGEDNCEP VSDQIPDDPE // ID V4SRX8_9ROSI Unreviewed; 104 AA. AC V4SRX8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR50588.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10033936mg {ECO:0000313|EMBL:ESR50588.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR50588.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR50588.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR50588.1; -; Genomic_DNA. DR RefSeq; XP_006437348.1; XM_006437285.1. DR GeneID; 18043288; -. DR KEGG; cic:CICLE_v10033936mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 83 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 83 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESR50588.1}. SQ SEQUENCE 104 AA; 12137 MW; 84B690C181C61F24 CRC64; ILPAEMRRIL PSKTIPAFLV YKGKEWEMVY LGEDFQKRNK RFGSEWKTFA IDNKLKVGDA CVFELMECRN DCLKFRVQIL RGDIPSKFED NTNSENEDTT IIVG // ID V4SSI8_9ROSI Unreviewed; 679 AA. AC V4SSI8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10011065mg {ECO:0000313|EMBL:ESR43657.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR43657.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR43657.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536861; ESR43657.1; -; Genomic_DNA. DR RefSeq; XP_006430417.1; XM_006430354.1. DR GeneID; 18039286; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 611 679 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 679 AA; 76434 MW; EA20542A2BE4AB3E CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG TSSFNDNRDE TGSGLNWLRG GTGEQGLTTL NFQSLGMFPW MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ QVIQQSIPHN LLPAQSQILT ENIPQHLLQQ LNSQAEDRAQ QQQQPQQHMY HDALQIRTDE LLQRQQSNLP SPSFSKANFM DSSTEISVSI SPMQNMLGSL PEGSGNLLNF SGAGPSMLRQ QFPQQSLGSK YEPSQVYKSG SVGRSLDISR FSSYNELREE LGQMFGIEGK FEDPLRSGWQ LVFVDRENDV LLLGDDPWE // ID V4SWF2_9ROSI Unreviewed; 368 AA. AC V4SWF2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR43365.1}; GN ORFNames=CICLE_v10012008mg {ECO:0000313|EMBL:ESR43365.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR43365.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR43365.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536861; ESR43365.1; -; Genomic_DNA. DR RefSeq; XP_006430125.1; XM_006430062.1. DR GeneID; 18037991; -. DR KEGG; cic:CICLE_v10012008mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 124 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 124 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 368 AA; 41603 MW; 70DFD48E0793BD9B CRC64; MSINHFSTDL QETPWWQQHP QQLQQSMMET TQNSSNNSSS SATDPQQQQF SSWSSPHHHH QFYHHHQQHQ HHLWLDSYNN NNNNSHHNPT LSFNLNSQHD ATEAHPMTNL NSNQEQELEK EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGGGADLG SSSSDKGLLL SFEDESGKCW RFRYSYWNSS QSYVLTKGWS RYVKEKRLDA GDVILFERHR TDSERLFIGW RRRGATAVAQ VAQAGGAAAG GCGWPRGLYP NHPYPVDVAH GHGVSAPLYQ HAGSGVQSQT TSVGNSRTLR LFGVNFECQV DDKSEGSESQ AEAHGHQQFN YPVEAYDSNS TNRHNHVVGQ FNCLCYRHSV IANKIMSN // ID V4SWW1_9ROSI Unreviewed; 90 AA. AC V4SWW1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR45282.1}; GN ORFNames=CICLE_v10002972mg {ECO:0000313|EMBL:ESR45282.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR45282.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR45282.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR45282.1; -; Genomic_DNA. DR RefSeq; XP_006432042.1; XM_006431979.1. DR GeneID; 18040467; -. DR KEGG; cic:CICLE_v10002972mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 28 90 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 28 90 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 90 AA; 10183 MW; 9D0657B0FF8BD76B CRC64; MASYEERARA LKSAEQLQSS LQSGYPSFIK SMVRSHVYSC FWLGLPNQFC KQNLPKTVTE MVLEDENGRE FEAVYIGPKK GLSGGWRAFA // ID V4SXA6_9ROSI Unreviewed; 731 AA. AC V4SXA6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10011065mg {ECO:0000313|EMBL:ESR43655.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR43655.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR43655.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536861; ESR43655.1; -; Genomic_DNA. DR RefSeq; XP_006430415.1; XM_006430352.1. DR GeneID; 18039286; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 611 695 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 731 AA; 82094 MW; DCC62DD520A8D31F CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG TSSFNDNRDE TGSGLNWLRG GTGEQGLTTL NFQSLGMFPW MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ QVIQQSIPHN LLPAQSQILT ENIPQHLLQQ LNSQAEDRAQ QQQQPQQHMY HDALQIRTDE LLQRQQSNLP SPSFSKANFM DSSTEISVSI SPMQNMLGSL PEGSGNLLNF SGAGPSMLRQ QFPQQSLGSK YEPSQVYKSG SVGRSLDISR FSSYNELREE LGQMFGIEGK FEDPLRSGWQ LVFVDRENDV LLLGDDPWEA FVSNVWYIKI LSPEDVQKMG EQGVESFSPS SGQRANSRGN CGRDPVGSLE Y // ID V4SZU0_9ROSI Unreviewed; 101 AA. AC V4SZU0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 19. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR44610.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10003852mg {ECO:0000313|EMBL:ESR44610.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR44610.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR44610.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR44610.1; -; Genomic_DNA. DR RefSeq; XP_006431370.1; XM_006431307.1. DR GeneID; 18041753; -. DR KEGG; cic:CICLE_v10003852mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 6 93 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. FT NON_TER 101 101 {ECO:0000313|EMBL:ESR44610.1}. SQ SEQUENCE 101 AA; 11339 MW; 2B72F45462826D87 CRC64; MAVYSKSLTE SDVSTRLAVT SSWLNNLFPP FPAGQYHQVL DVEDENGKKW KFVLCIRQEG QYDKPVISQA TWRPFVVHKQ AEVGDEVEFS RKTDGASGSA C // ID V4T1N2_9ROSI Unreviewed; 893 AA. AC V4T1N2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR45260.1}; GN ORFNames=CICLE_v10000225mg {ECO:0000313|EMBL:ESR45260.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR45260.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR45260.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR45260.1; -; Genomic_DNA. DR RefSeq; XP_006432020.1; XM_006431957.1. DR GeneID; 18040251; -. DR KEGG; cic:CICLE_v10000225mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 331 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 645 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 331 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 893 AA; 99096 MW; 042F3C59F4E10A72 CRC64; MGPRICMNPK CRTANTHEWK KGWLLRSGVC ADLCYDCGSA YENFIFCNTF HLEEPGWREC NFCSKRLHCG CRASNSFLEL LDYGGVGCRS CAMSPRLHLI QRDEIPNGFG ALTKKDSDDT QTPMLENRVV GDGTAEGKLT QLCRIMEANE PSFLAPFQRG DTIVSLGQEK REELRLPFVE VGTGFSSPTK LSSRSSKFTK PDGSRSMLDV RDMPESLAQR SSSMSLGVPA GCSNFVPPFS NGAADGREPC KAHPSFQQGQ RSRPILPKPS KTGLTISSET KKSTASQLRI ARPPAEGRGK NHLLPRYWPR ITDQELQQLS GDLNSTIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPHI SQSEGVPLRV QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTITFSRIDP GGKLVMGFRK APIPGDMQDA QTSAITNGCP GESSLSGVTE NLPTVSGYSG HFQMLKGSKD PHIDALSEHL SLAEGDNGWH KSENHGQKTN EDSPQKSLLG MEKKRTRNIG SKSKRLLMHS EEAMELRLTW EEAQDLLRPS PSARPNIVTI EDHEFEEYDE PPVFGKRTVF TARPSGEQEQ WAPCDDCSKW RKLPTDALLP PKWTCSDNVW DSIRCSCSAA EEMIQKDLEN LLRVGRESKK RKIVESQRRD QQNEPSGLDA LATAAVLGDY AGDSGEPSSV GATTTRHPRH RPGCTCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLML RKKRRQSERE VEVAQKNHSD QMGDSEMNGS VKQESVPTSH TDNEISQTKS QTEVAESSSA QIGLDLNCYP NREDMQPEES RVSIMTLDRV ASVPLEDCHP NGLASLSSCM LQQVNNGDHE RLLSDERFLA SVGWGRDQEP NLD // ID V4T2E5_9ROSI Unreviewed; 835 AA. AC V4T2E5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10011065mg {ECO:0000313|EMBL:ESR43656.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR43656.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR43656.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536861; ESR43656.1; -; Genomic_DNA. DR RefSeq; XP_006430416.1; XM_006430353.1. DR GeneID; 18039286; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 799 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 835 AA; 93135 MW; EB8473D4E2B226B9 CRC64; MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG TSSFNDNRDE TGSGLNWLRG GTGEQGLTTL NFQSLGMFPW MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ QVIQQSIPHN LLPAQSQILT ENIPQHLLQQ LNSQAEDRAQ QQQQPQQHMY HDALQIRTDE LLQRQQSNLP SPSFSKANFM DSSTEISVSI SPMQNMLGSL PEGSGNLLNF SGAGPSMLRQ QFPQQSLGSK YEPSQVRDFV HSMSLPSSYN GKDAAVGTEN CNTDSQNSVV FGVHIDSSGL LLPTTVSSFT TSVDPGVSSM PLGDSGFHNS MYGCMQDSSE LLHNVGQIDQ LTPTRTFVKV YKSGSVGRSL DISRFSSYNE LREELGQMFG IEGKFEDPLR SGWQLVFVDR ENDVLLLGDD PWEAFVSNVW YIKILSPEDV QKMGEQGVES FSPSSGQRAN SRGNCGRDPV GSLEY // ID V4T4J8_9ROSI Unreviewed; 395 AA. AC V4T4J8; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR48117.1}; GN ORFNames=CICLE_v10000881mg {ECO:0000313|EMBL:ESR48117.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR48117.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR48117.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR48117.1; -; Genomic_DNA. DR RefSeq; XP_006434877.1; XM_006434814.1. DR GeneID; 18042612; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 212 308 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 212 308 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 395 AA; 44565 MW; 6585994CEC8AD0A4 CRC64; MDNQPGMLYF RRPCFFNIFS SNLSAECLKL PLQFVRHMEG RTSGSVTLIG PSWDTWHIDL IQQDDNLFFD KGWPVFLRDN FIECGDLLVF RYDGELHFTV QIFDQSGCEK EAAFNSKSTS TGQKREREEA VAHSDKALQS LLKKIRECSS SFESDCIDDN RDREADSCEE TRRCLSLSTI FASPSQPKTC NIKPEDEEKK VAQSFISAFP YFVRKMKRFN VSGSYTLNIP YQFSMAHLPN FKTEVVLHNL KGASWTVNSV PTTKVHTSHT FCGGWLAFVR GNEIKLGDIC IFELVHKCEL HVYILRVGKQ YPDSQRGTTV LTGSNVSSTT ISCKQFDGVP KKVKKNSLKK IQLCNVKGSK SCEIKKHIGT DGNSVSIATC CLPKISHEKS GKAVN // ID V4T6U1_9ROSI Unreviewed; 683 AA. AC V4T6U1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR45261.1}; GN ORFNames=CICLE_v10000225mg {ECO:0000313|EMBL:ESR45261.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR45261.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR45261.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR45261.1; -; Genomic_DNA. DR RefSeq; XP_006432021.1; XM_006431958.1. DR GeneID; 18040251; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 331 432 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 645 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 331 432 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 683 AA; 75796 MW; FBA8A8DD1BC3CB88 CRC64; MGPRICMNPK CRTANTHEWK KGWLLRSGVC ADLCYDCGSA YENFIFCNTF HLEEPGWREC NFCSKRLHCG CRASNSFLEL LDYGGVGCRS CAMSPRLHLI QRDEIPNGFG ALTKKDSDDT QTPMLENRVV GDGTAEGKLT QLCRIMEANE PSFLAPFQRG DTIVSLGQEK REELRLPFVE VGTGFSSPTK LSSRSSKFTK PDGSRSMLDV RDMPESLAQR SSSMSLGVPA GCSNFVPPFS NGAADGREPC KAHPSFQQGQ RSRPILPKPS KTGLTISSET KKSTASQLRI ARPPAEGRGK NHLLPRYWPR ITDQELQQLS GDLNSTIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPHI SQSEGVPLRV QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTITFSRIDP GGKLVMGFRK APIPGDMQDA QTSAITNGCP GESSLSGVTE NLPTVSGYSG HFQMLKGSKD PHIDALSEHL SLAEGDNGWH KSENHGQKTN EDSPQKSLLG MEKKRTRNIG SKSKRLLMHS EEAMELRLTW EEAQDLLRPS PSARPNIVTI EDHEFEEYDE PPVFGKRTVF TARPSGEQEQ WAPCDDCSKW RKLPTDALLP PKWTCSDNVW DSIRCSCSAA EEMIQKDLEN LLRVGRGMSQ ASVFLIPAQV LYAMTGSEDS FKN // ID V4T8U7_9ROSI Unreviewed; 129 AA. AC V4T8U7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR56693.1}; GN ORFNames=CICLE_v10024116mg {ECO:0000313|EMBL:ESR56693.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR56693.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR56693.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR56693.1; -; Genomic_DNA. DR RefSeq; XP_006443453.1; XM_006443390.1. DR GeneID; 18047441; -. DR KEGG; cic:CICLE_v10024116mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 49 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 49 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 129 AA; 14728 MW; D41ED04A80622EE1 CRC64; MGKTNEKCLF SKTLTKTDIN NKFSVKSKSL ASFPPFGAQT YAQDFNAEDE EGKKWLFRLI IRKGKHKKPV ISAGWRSFVR QKKLKIDDKV LFFKEQNEAE IATGGKYKIK VQKAVKVFKA IMGYVPCMG // ID V4T9C4_9ROSI Unreviewed; 358 AA. AC V4T9C4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR48115.1}; GN ORFNames=CICLE_v10000881mg {ECO:0000313|EMBL:ESR48115.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR48115.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR48115.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR48115.1; -; Genomic_DNA. DR EMBL; KI536799; ESR48116.1; -; Genomic_DNA. DR RefSeq; XP_006434875.1; XM_006434812.1. DR RefSeq; XP_006434876.1; XM_006434813.1. DR GeneID; 18042612; -. DR KEGG; cic:CICLE_v10000881mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 358 AA; 40162 MW; 4724A5308A86A560 CRC64; MEGRTSGSVT LIGPSWDTWH IDLIQQDDNL FFDKGWPVFL RDNFIECGDL LVFRYDGELH FTVQIFDQSG CEKEAAFNSK STSTGQKRER EEAVAHSDKA LQSLLKKIRE CSSSFESDCI DDNRDREADS CEETRRCLSL STIFASPSQP KTCNIKPEDE EKKVAQSFIS AFPYFVRKMK RFNVSGSYTL NIPYQFSMAH LPNFKTEVVL HNLKGASWTV NSVPTTKVHT SHTFCGGWLA FVRGNEIKLG DICIFELVHK CELHVYILRV GKQYPDSQRG TTVLTGSNVS STTISCKQFD GVPKKVKKNS LKKIQLCNVK GSKSCEIKKH IGTDGNSVSI ATCCLPKISH EKSGKAVN // ID V4T9C6_9ROSI Unreviewed; 727 AA. AC V4T9C6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR56903.1}; GN ORFNames=CICLE_v10019039mg {ECO:0000313|EMBL:ESR56903.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR56903.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR56903.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR56903.1; -; Genomic_DNA. DR RefSeq; XP_006443663.1; XM_006443600.1. DR GeneID; 18046559; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 581 685 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 581 685 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 727 AA; 80766 MW; 485E083A934E6B81 CRC64; MKNLQLYGED LHVRSKIEAN NHTGFQAMTE EQVTGAGAER EIYMQDDLLD VDDASIFYAD FPPLPDFPCM SSSSSSSSTP AAVKAITSSA SSSSASSSSS AASWAVLRSD AEEDVDKKNH QDQSGDAATQ PALSSTASMD ISQATDTGIN GVGVDCMDVM ENFVFMDLLD NNDLFDPSSI FNQDDSQPFE GYQQQQQQNQ PQHEHRQQER DQELMMQSNN GDNSNEDGGA SDDLAMVFLE WLKSNKETVS AEDLRNVKIK KSTIECAAKR LGGGKEAMKQ LLKLILEWVQ TNHLQKRRMR EALLPASNNN NNLPHQQHFQ DTFQNPNPNP NPNHIPNPNL NCNPIPPEPN PCFAQSSWIG QPSFIHDPAT MVTGFPTPAV GYMGDSFANG MSNINGHGYA APPSEYHMLE TTRSWPNSQF GLASNYNSFS DNNLHPAPLH PQAFTGYGNQ YPYPYLPGHG EQRLMRMGSS ATKEARKKRM ARQRRLSTHP RHQHHHNNQQ NQLQGQNADQ HARFGSDNCN PAAQANSGNW VFWPASAGGP AAVSPLSPVD RQPMQPQNYQ RQPASDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISIAM EDIGTSRVWN MRYSFRFWPN NKSRMYLLEN TGDFVKANGL QEGDFIVIYS DVKCGKYLIR GVKVRQPGPK SETKRTGKSQ RNQHANPPSA AMGNGSSSSL QVPQTVK // ID V4TCG2_9ROSI Unreviewed; 578 AA. AC V4TCG2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10000693mg {ECO:0000313|EMBL:ESR47331.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR47331.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR47331.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR47330.1; -; Genomic_DNA. DR EMBL; KI536799; ESR47331.1; -; Genomic_DNA. DR EMBL; KI536799; ESR47332.1; -; Genomic_DNA. DR RefSeq; XP_006434090.1; XM_006434027.1. DR RefSeq; XP_006434091.1; XM_006434028.1. DR RefSeq; XP_006434092.1; XM_006434029.1. DR GeneID; 18042469; -. DR KEGG; cic:CICLE_v10000693mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 578 AA; 63889 MW; 2F5A843DDC5B969A CRC64; MPSQQPYSPA EPRAVDPRIW RACAGSSVQI PSVNSRVYYF PQGHVEQSCP SITLSVTKPF IPCLITHVEF LADPVTDQVF AKVVLNPITA LEPSRNFLEQ QQEQQPRGLS IGNVEENNVV AFAKILTPSD ANNGGGFSVP RFCADSIFPP LNYQVDPPVQ NISVTDIHGA VWEFRHIYRG TPRRHLLTTG WSKFVNRKKL IAGDSVVFMR DSRGKMYIGL RRSVRYGNNG DSAGARWREQ TGMKAEAVAV AVERAVLGLP FEVVYYPRAG WADFIVRAEV VDSAMRVFWT AGMRVKMVVE TEDSSRMTWI QGTVTAASMP DRGPWCGSPW GMLEVTWDEP EILQNAKRVS PWQIEFVSPT QPLHTAFPPA KRLKFSPNYG SMTDVEEEIF FPVNGLGNST VGCLNPSLLN YNTFPAGMQG ARQNPYSLFS LSNFISENNH QMSSDGIFGN NMVPKLRRVS TELNIGSSQS DNLSPDSHSS VHSFGTELGG NQGCNSTKVG VRSIQLFGKI IHMKQPVESG FGDVVCPHDD GSKGFSERED VNLPLDLSLT YTELLNRFGI QGRGSEVEDE VVAEACSL // ID V4TCL2_9ROSI Unreviewed; 509 AA. AC V4TCL2; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; DE Flags: Fragment; GN ORFNames=CICLE_v100191741mg {ECO:0000313|EMBL:ESR58063.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR58063.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR58063.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR58063.1; -; Genomic_DNA. DR RefSeq; XP_006444823.1; XM_006444760.1. DR GeneID; 18047540; -. DR KEGG; cic:CICLE_v100191741m; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 509 509 {ECO:0000313|EMBL:ESR58063.1}. SQ SEQUENCE 509 AA; 56504 MW; 20D73F0A57E71C9A CRC64; MAYVEPNFGC SLSSQGGPGS GDLYRELWKA CAGPLVEVPR NGERVYYFPQ GHIEQLEAST NQELTHQEPL FDLPSKILCR VVHIELLAEQ ETDEVYAQIT LHPETDQTEP RSPDQCLPEP PKQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMT LATPTQELAA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGENG ELRVGVRRLA HQQSSMPSSV ISSQSMHLGV LATAAHAVKT STLFIVYYKP RTSQFIIGLN KYLEAVHHCF SVGMRFKMRF EGEDSPERRF TGTIVGVGDF SEQWPGSKWR SLKIQWDEPA TVQRPERVSP WEIEPFVASA PLNLAQPAVK SKRPRSIDIP ASEITTNSAA SAFWYQGSTQ SHDITQVVGA TEGQSSESQV VRPMRQKEID STIINNSNDC SSRLAPEGIW PSSPHLNVSL NLFPDSTDDH RIVAAQSVLS GYASSGRPGN TVIHEEVERG KKSEASLGC // ID V4TEN9_9ROSI Unreviewed; 517 AA. AC V4TEN9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR48121.1}; GN ORFNames=CICLE_v10000881mg {ECO:0000313|EMBL:ESR48121.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR48121.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR48121.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR48118.1; -; Genomic_DNA. DR EMBL; KI536799; ESR48119.1; -; Genomic_DNA. DR EMBL; KI536799; ESR48120.1; -; Genomic_DNA. DR EMBL; KI536799; ESR48121.1; -; Genomic_DNA. DR RefSeq; XP_006434878.1; XM_006434815.1. DR RefSeq; XP_006434879.1; XM_006434816.1. DR RefSeq; XP_006434880.1; XM_006434817.1. DR RefSeq; XP_006434881.1; XM_006434818.1. DR GeneID; 18042612; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 69 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 175 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 397 493 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 69 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 175 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 397 493 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 517 AA; 58014 MW; 142B532FAC898E0E CRC64; MEGRTSGSVT LIGPSWDTWH IDLIQQDDNL FFDKGWPVFL RDNFIECGDL LVFRYDGELH FTVQIFDQSG CEKEAAFNSK STSTGQKRER EEAVAHSDKA LQSLLKKIRE CSSSFESDCI DDNRDREADS CEETRRCLSL STIFASPSQP KTCNIKPEDE EKKVAQSFIS AFPYFVRKMK RFNVSGSYTL NIPYQFSMAH LPNFKTEVVL HNLKGASWTV NSVPTTKVHT SHTFCGGWLA FVRGNEIKLG DICIFELVHK CELHVYILRV GKQYPDSQRG TTVLTGSNVS STTISCKQFD GVPKKVKKNS LKKIQLCNVK GSKSCEIKKH IGTDGNSVSI ATCCLPKISH EKSEAAAQNR NNVEAKMDST PGGNLRTMMA LDEEKAARSF NSCVPHFVRI MRKFNISGSY TLKIPYKFAM AHLPDCKTEI VLRNLKGECW TVNSLPDSKG RMVHTFCGGW MAFVRGNDIK IGDVCIFELI SKLDMRVHIT GVGRKEVDLE SGKLTSNESS TVDHPLF // ID V4TF44_9ROSI Unreviewed; 846 AA. AC V4TF44; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10030696mg {ECO:0000313|EMBL:ESR50185.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR50185.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR50185.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR50185.1; -; Genomic_DNA. DR RefSeq; XP_006436945.1; XM_006436882.1. DR GeneID; 18043475; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 151 253 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 721 814 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 151 253 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 846 AA; 94479 MW; 1EEF6143076ECABC CRC64; MAAAASSSEV SMKSCNETGR IPMEGQNSNS TTSGVKRVGD PEMALYTELW HACAGPLVTV PREGERVYYF PQGHIEQVEA STNQVADQQM PVYDLPSKIL CRVINVQLKA EPDTDEVFAQ VTLLPESNQD ENAVEKEPPP PPPPRFHVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSRQPPTQE LAAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA VSTGTMFTVY YKPRTSPSEF IVPYDQYMES IKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GIEDADPQRW RDSKWRCLKV RWDETSTIPR PERVSPWKIE PALAPPALNS LPMPRPKRPR SNMLPSSPDS SVLTREGSSK LNVDPSSATG FSRVLQGQEF STLRGNFAER ESNESDTAEK SVVWPPSLDD EKIDVVSASR RYGSENWVPP GRHEPVYTDL LSGFGANADP SHGFSSPFAD AVPVRKSVLD QEGKFNLVAR PWSLMPSGPS LKMPESNAKV PVQGGDVNYQ VRGNVRYGGF GDYPMLNGNR VEHSHGNWLM PPLPPSNFEN SAHSRELMPK SAMVQDQEAG KSKDCKLFGI PLFSNHVMPE PVVSHRNTMN DPAGNLDQQF RAFESDQKSD HSKSSKLADD NQVFNEHEKL SQPSQTHTKD VRSKTQCGST RSCTKVQKQG IALGRSVDLS KFNNYDELIA ELDQLFEFDG ELMAPKKNWI IVYTDDEGDM MLVGDDPWQE FCGMVRKIFI YTKEEVLKMN SVSFSSKGED SPMNGDGIDA KEVKQPLPLA SNAENF // ID V4TF66_9ROSI Unreviewed; 306 AA. AC V4TF66; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR50210.1}; GN ORFNames=CICLE_v10032216mg {ECO:0000313|EMBL:ESR50210.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR50210.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR50210.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR50210.1; -; Genomic_DNA. DR RefSeq; XP_006436970.1; XM_006436907.1. DR GeneID; 18045423; -. DR KEGG; cic:CICLE_v10032216mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 306 AA; 35462 MW; F8E8C84ED21C907F CRC64; MAYRPPQFFK VILPPSLEHK KLRIPPKFVR DFGHELSEDA TLAVPNGRPW RVRLKRDEGG VWFDDGWYDF AKYYSVSAGY FSVFKYDKNS NFCVLIFDFT ACEINYKREE GSKLDKRSRQ SAANYSFENF KAKHKYRECE PQIKKCRKEE LVEKNESDDG GGGGGGDIEY NLWDLLTEMG ICISKKHRAF STVESKRVLK IARSLNLKYP TSLIILPSSS ITHNRVYVPA TFAKHFASRD AKSMEVRVSN ERHKFMNMNV CWRENGGFAL SMTELVEDEN LKEGDIFIFE LISKRVAVLN LSIYHL // ID V4TFD4_9ROSI Unreviewed; 946 AA. AC V4TFD4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10000183mg {ECO:0000313|EMBL:ESR48386.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR48386.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR48386.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR48386.1; -; Genomic_DNA. DR RefSeq; XP_006435146.1; XM_006435083.1. DR GeneID; 18042398; -. DR KEGG; cic:CICLE_v10000183mg; -. DR KO; K14486; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 832 916 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 946 AA; 104767 MW; 73FA9AB42CB11815 CRC64; MGSVEEKIKA GGLVIRAQTT LLEEMKLLKE MQDQSGARKA INSELWHACA GPLVFLPQVG SLVYYFPQGH SEQVAASTKR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIYAQMSL QPVNSEKDVF PIPDFGLKPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLRAGDS VLFIRDEKSQ LMVGVRRANR QQTALPSSVL SADSMHIGVL AAAAHAASNR SQFTIFYNPR ACPSDFVIPL AKYRKSVYGT QMSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD EPGCSDKQKR VSPWEIETPE SLFIFPSLTS GLKRPFHSGI LATETEWGSL IKRPLACPEI APGVMPYSSI SNLCSEQLIK MMLKPQLVNN PGSFAASSLQ ETSGAKGAHL EEVKTLQSTI NQKPRLVPSE MNRIDNQNCS QICLNQADTV NSSLSRIHIP EKPHPPSKCE KQAPPGMNTD HLKSEPRQSI EQSSNLTSAA DCSMEKPSGP LNPQNLVNQH AFHNQNEGLL QLQSSWPMQS QLESVFQAQQ INVPQSDSTA HSGSLPILDT DEWMSHTSCN SLAGTYNRSP GPLPMFGLQE PSTMLPEVIN PSLSFPGQEM WDHQLNNLRF LSPVDPLTSF TQQDHCSLNS SGLRDLSDES NNQSGIYSCL NIDVSNGGST MIDHSVSSAI LDEFCTLKDA NFQNPPDCLM NTFSSSQDVQ SQITSASLAD SQAFSRQDFP DNSGGTSSSN VDFDESSLLQ NTSWQPVVPP MRTYTKVQKT GSVGRSIDVT NFKNYDELCS AIERMFGLEG LLNDPRGTEW KLVYVDYEND VLLVGDDPWE EFVGCVRCIR ILSPQEVQQM SEEGMKLLNS AAMQGIDCTK PEGGRA // ID V4TGR7_9ROSI Unreviewed; 643 AA. AC V4TGR7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10019131mg {ECO:0000313|EMBL:ESR52547.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR52547.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR52547.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR52547.1; -; Genomic_DNA. DR RefSeq; XP_006439307.1; XM_006439244.1. DR GeneID; 18046065; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 178 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 531 612 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 76 178 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 643 AA; 72114 MW; 6EDF64516DF35127 CRC64; MEQLEASTNQ ELNQRIPLFR LPSKILCRVV NIHLMAEQET DEVYAQITLL PEPSQNEPTT PDPCPADSPR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMNQS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGENGEL HVGVRCLARQ QSSMPSSVIS SQSMHLGVLA TASHAVATQT MFVVYYKPRT SQFIISLNKY LEAVNNKFAV GMRYKMRFEG EDSPDRRFSG TVVGVEDFSP HWKDSKWRSL KVQWDEPASI TRPDRVSPWE IEPFVASATP NLVQPVLAKN KRPRLPMEVP PLDLPSAASA PWSARLAQSH NLTQLSVTAE DKRIDNHVAW HHKHSDFSSN SNFMSRTQSD GEWLTSPRVK FSQQLFQEAI DDNKNISAWP AHSGHSTPHP SKPNNDTLLE QVETGRKTET GTSCRLFGIE LINHATSSAP SEKVPVSSLT TEGHIISTIS AAADSDGKSD IAKEFKEKKQ EQVQVSPKES QSKQSCLTSN RSRTKVQMQG VAVGRALDLT TLVGYDHLID ELEEMFDIKG QLHTRTKWEI VYTDDEGDMM LVGDDPWHEF CNMVKRIFIC SSQDVKKMSP GSKLPMFSIE GEDILLSSDS AEK // ID V4TII3_9ROSI Unreviewed; 301 AA. AC V4TII3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR60203.1}; GN ORFNames=CICLE_v10016085mg {ECO:0000313|EMBL:ESR60203.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR60203.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR60203.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536312; ESR60203.1; -; Genomic_DNA. DR RefSeq; XP_006446963.1; XM_006446900.1. DR GeneID; 18052747; -. DR KEGG; cic:CICLE_v10016085mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 301 AA; 33414 MW; 6AAD4F4A6BFFCF9D CRC64; MMMDQGVVVH EKNEARAFMA GVEGVTAKGD KSTRFGSDPI RASGSSLDLV AAVTSAVGAN INRKKRMARQ RRSSSFNLLA FSSPSSSSTS HVSPPLALPA REIDPGRLRF LFQKELKNSD VSSLRRMILP KKAAEAHLPV LESKEGIFIS MEDLDGLHVW TFKYRFWPNN NSRMYVLENT GDFVNAHGLQ LGDFIIVYQD DHNQNYVIQA KKASDQDVYT NLTSDSVNDI LLNDYEANRS GSFYVNHPMA GEDTGMSFIY DTTTFSNDSP LDFLGGSLTS YSRIGQESFG SVENISLDDF Y // ID V4TIS5_9ROSI Unreviewed; 108 AA. AC V4TIS5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR53262.1}; GN ORFNames=CICLE_v10023279mg {ECO:0000313|EMBL:ESR53262.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR53262.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR53262.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR53262.1; -; Genomic_DNA. DR RefSeq; XP_006440022.1; XM_006439959.1. DR GeneID; 18050175; -. DR KEGG; cic:CICLE_v10023279mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 31 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 31 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 108 AA; 12377 MW; 8392A0D25F8DF674 CRC64; MKYYISNKAV VQRICKSFHL LPRALELSTC LPTSSFRGRS RTQRKVVVLR DPDMRMWPVL YHERSGFKVL TSGWEAFSKA NNIQPGDGCI FGVESYSESI YGVSIVRK // ID V4TKN7_9ROSI Unreviewed; 783 AA. AC V4TKN7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10030751mg {ECO:0000313|EMBL:ESR52180.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR52180.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR52180.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR52180.1; -; Genomic_DNA. DR RefSeq; XP_006438940.1; XM_006438877.1. DR GeneID; 18045400; -. DR KEGG; cic:CICLE_v10030751mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.80.10.10; -; 1. DR Gene3D; 3.80.20.20; -; 2. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR032675; L_dom-like. DR InterPro; IPR000494; Rcpt_L-dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 202 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 202 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 783 AA; 87957 MW; 5920001C2560E689 CRC64; METIDAPSET ETDDLNSTEI SDEDDCEGEI ETDDLIFTEI SDKDDDYNLL LWQAFAGPPP SLPKKGDLVV YFPQGHLEYS APASVSKAPP TFDLKPEIIC RVADVRYLVS KKTDKVYTKM TLLPLPEMVG ENFKGKELQD LVVDNKRDGE GSTANSTPPL FYKKLRASDQ SKKKIVIRAK DAENVFPFLA HLDYKKQINY SVIAKDVHGV AWKFNFVDGK SRRHYLTVGW KYFVRQKNLV PGDTVIFIRD ENNKLRLGIK RSIQAVNDVP GSIIQKHNTY LDVLSPVADA ISNKSTFDVF YSPRARHSEF VICYQKYMKS IRKPVCIGEK IQMQYEMDDS SGKRCSGVVI GACDLDPNRW PNSKWRCLLV RWEEYIGSNC EEMVSPWEID CSLSLPSMLH SSPRLKRPRT SLQDNLPAYS TTGLEFPESS ITSEGEGTAS LINAIDLNRP FDLEPQAPVP KNFLALALFP DEDKILGIRT GETLESLEID NLSSLASFLR SELAATTVKQ LKINKCPDLE VLLHRMAYTS LEYLEFSSCL FFSNSKRDYF PTTLKRLKIC DCTNAELILK VLMDQKGLAL ESLEVDGCSS LFSLPINQLP ATLRHLRIVN CMNLKSLGES SKIRNCDSVV GPEGESSLEN MTSSHTLELR ELEIWDCLEL EFLPEDMHNF TDLNLLSISN CPSLESFPEG GLPNTSLTSL LISECENLMS LPHQIHKATS LQDLSVSGCP SLMSFPHGGL PPNLISLGII DCENLIPLSQ WELHKLKHLN KYTILGGLPV LEE // ID V4TL84_9ROSI Unreviewed; 466 AA. AC V4TL84; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR52420.1}; GN ORFNames=CICLE_v10020034mg {ECO:0000313|EMBL:ESR52420.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR52420.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR52420.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR52420.1; -; Genomic_DNA. DR RefSeq; XP_006439180.1; XM_006439117.1. DR GeneID; 18047347; -. DR KEGG; cic:CICLE_v10020034mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 268 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 163 268 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 466 AA; 52377 MW; 9139C251F5A0AD61 CRC64; MEFGSSSNSY SNRERLICEE DEMIGIDYEM GNIISNTGSN QAVKLHFSTT YASNSSSSPS SASSHHHHHH HQYTTQTQQL LPLTTHHQNY NKQQQQPQMG SWLLGKTTTT TTAAELEDVS NEEETAAPTK EQAIIMQETK DIIEEGEAEE DRVLISLEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSSNEKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDVVSFHR GVGDLAKGRL FIDWRRRSHP PAAAAASFSR HLPFYRSIPW NPLLMMRPPV LPASMYSQSQ INNNFYNRNS ISLGGTGNNN NVLSTRTLGS ILYLRSQLPA APAIQQQPPP PPPHTEIGMT KWQQHPIVFD SVPVVQGKAT AKRLRLFGVN MDCPITESDD ECHILSSSTS IQHATMAIHD QPSQLSSSSQ LSLYDATPLL PPFDFLNKGK ASMSFD // ID V4TNZ9_9ROSI Unreviewed; 899 AA. AC V4TNZ9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10014198mg {ECO:0000313|EMBL:ESR62208.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR62208.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR62208.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536312; ESR62208.1; -; Genomic_DNA. DR RefSeq; XP_006448968.1; XM_006448905.1. DR GeneID; 18052304; -. DR KEGG; cic:CICLE_v10014198mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 766 850 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 899 AA; 99438 MW; C8A99ED23B6457D1 CRC64; MRLSTAGFSP QHQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGTLS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PPTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYSSPFP LRLKRPWPVG LPAFHGIKDE DLGINSQLMW LRGDGDRGMQ SLNFQGLGVT PWMQPRMDAS MLGLQNDMYQ AMAAAALREM RAVDPSKPNA ASLMQFQQPQ NLPSRTSALV QSQMLQQSHP QQTFLQGVQE NQHQSQSQTH SQSHLLQPQL QHSHSFNNQQ QQPLPQPQQQ VDHQQIPSAV SAMSQFASVS QSQSPPMQAI SSLCQQQSFS DSNGNPATNP IVSPLHSLLG SYAQDESSHL LNLPRSNPLI HSPTWPSKRA AVEPLFSSGA PQCVLPSVEQ LGPPHANISQ NSISLPPFPG RECSIDQEVS ADPQSHLLFG VNIEPSSLLM QNEMSSLGGV GSNSDSTTIP FASSNYMSTA GADFSVNPEI APSSCIDESG FLQSPENVGQ VNPPNRTFVK VYKSGSFGRS LDITKFSSYH ELRSELARMF GLEGHLEDPL RSGWQLVFVD RENDVLLLGD GPWPEFVNSV WCIKILSPPE VQQMGKRGNE LLNSVPIQRL SNSSCDDYAT RQDSRNLSAG ITSVGSLDF // ID V4TQ06_9ROSI Unreviewed; 441 AA. AC V4TQ06; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR62608.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10018117mg {ECO:0000313|EMBL:ESR62608.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR62608.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR62608.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536312; ESR62608.1; -; Genomic_DNA. DR RefSeq; XP_006449368.1; XM_006449305.1. DR GeneID; 18053437; -. DR KEGG; cic:CICLE_v10018117mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 206 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 206 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESR62608.1}. SQ SEQUENCE 441 AA; 49444 MW; 2254234E119813DF CRC64; CLYFHFNIME NNFFPASNNN TATTATANNN TINTFTNQQL SQPSMAYTQN SQLYLPTYYH QNMQYPSTFP LDQSGGQSFA AAAAAAAPYP VYPFWLAQNG IQNGGGNNAL PAAAGSWSLQ PHIRVPKEPQ RVVLDPQKTK IARIKRKLAR QKSLSLQRNA SSGASSSNVP SSAHFDATRL PTYGVDTHRD LFNFCTPDNK RLRVLLQKAL KNSDVGSLGR IILPKREAEE NLPSLSDKEG IHIVIRDVYS VKHWTLKFNQ FSSSVSTFSR FRYTVDFVKQ NGLEIGDSLT LYEDESKNLG QYFSVKKVER PEPAAEPSYK QQNYDFFPAA NQTPTPIMHQ ARDEEEASLA LLIEQLRHKE QQETYYNLMT LPLDDHEEAN NVVRASNNAT SSGIHAHLAA TSSSSHGAKM NNPEYDHHQT VDDCYSCLDM LPDVDTYNFS I // ID V4TQE1_9ROSI Unreviewed; 265 AA. AC V4TQE1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR52091.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10033303mg {ECO:0000313|EMBL:ESR52091.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR52091.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR52091.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR52091.1; -; Genomic_DNA. DR RefSeq; XP_006438851.1; XM_006438788.1. DR GeneID; 18043546; -. DR KEGG; cic:CICLE_v10033303mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 200 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 200 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 265 265 {ECO:0000313|EMBL:ESR52091.1}. SQ SEQUENCE 265 AA; 30570 MW; DA3026701D372ADD CRC64; MATLLGIDEE ETVMMPSNAV NGVQVISQDH AEPAGAGCDC SRSRRFRRRV SRSCRPRYQR VAADNPLVFN PRVNRLPVQP PPPPPVREIN PFLMRFLFEK QLKNSDVNAA GRIVLPKKLA ETYLPPVNEK AGFWMHLEDM DFNKVWTFKF RFWPNNRGRM YIFENTRAFI KRYCLELGDY IMVYKDELEG SYLVRARKKG NYVPVHDQSN QVDNNANFPS INLEELVRCG NNYPKHACEV DTSDYAHLIL TPCCESLDFA PDPPL // ID V4TRL7_9ROSI Unreviewed; 690 AA. AC V4TRL7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10019131mg {ECO:0000313|EMBL:ESR52546.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR52546.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR52546.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR52546.1; -; Genomic_DNA. DR RefSeq; XP_006439306.1; XM_006439243.1. DR GeneID; 18046065; -. DR KEGG; cic:CICLE_v10019131mg; -. DR KO; K14486; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 123 225 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 123 225 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 690 AA; 77377 MW; 651F4B766EF74F70 CRC64; MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGQRV YYFPQGHMEQ LEASTNQELN QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELHVG VRCLARQQSS MPSSVISSQS MHLGVLATAS HAVATQTMFV VYYKPRTSQF IISLNKYLEA VNNKFAVGMR YKMRFEGEDS PDRRFSGTVV GVEDFSPHWK DSKWRSLKVQ WDEPASITRP DRVSPWEIEP FVASATPNLV QPVLAKNKRP RLPMEVPPLD LPSAASAPWS ARLAQSHNLT QLSVTAEDKR IDNHVAWHHK HSDFSSNSNF MSRTQSDGEW LTSPRVKFSQ QLFQEAIDDN KNISAWPAHS GHSTPHPSKP NNDTLLEQVE TGRKTETGTS CRLFGIELIN HATSSAPSEK VPVSSLTTEG HIISTISAAA DSDGKSDIAK EFKEKKQEQV QVSPKESQSK QSCLTSNRSR TKVQMQGVAV GRALDLTTLV GYDHLIDELE EMFDIKGQLH TRTKWEIVYT DDEGDMMLVG DDPWHEFCNM VKRIFICSSQ DVKKMSPGSK LPMFSIEGED ILLSSDSAEK // ID V4TTV1_9ROSI Unreviewed; 725 AA. AC V4TTV1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR56902.1}; GN ORFNames=CICLE_v10019039mg {ECO:0000313|EMBL:ESR56902.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR56902.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR56902.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR56902.1; -; Genomic_DNA. DR RefSeq; XP_006443662.1; XM_006443599.1. DR GeneID; 18046559; -. DR KEGG; cic:CICLE_v10019039mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 581 683 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 581 683 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 725 AA; 80532 MW; 98D5617F69CF39CA CRC64; MKNLQLYGED LHVRSKIEAN NHTGFQAMTE EQVTGAGAER EIYMQDDLLD VDDASIFYAD FPPLPDFPCM SSSSSSSSTP AAVKAITSSA SSSSASSSSS AASWAVLRSD AEEDVDKKNH QDQSGDAATQ PALSSTASMD ISQATDTGIN GVGVDCMDVM ENFVFMDLLD NNDLFDPSSI FNQDDSQPFE GYQQQQQQNQ PQHEHRQQER DQELMMQSNN GDNSNEDGGA SDDLAMVFLE WLKSNKETVS AEDLRNVKIK KSTIECAAKR LGGGKEAMKQ LLKLILEWVQ TNHLQKRRMR EALLPASNNN NNLPHQQHFQ DTFQNPNPNP NPNHIPNPNL NCNPIPPEPN PCFAQSSWIG QPSFIHDPAT MVTGFPTPAV GYMGDSFANG MSNINGHGYA APPSEYHMLE TTRSWPNSQF GLASNYNSFS DNNLHPAPLH PQAFTGYGNQ YPYPYLPGHG EQRLMRMGSS ATKEARKKRM ARQRRLSTHP RHQHHHNNQQ NQLQGQNADQ HARFGSDNCN PAAQANSGNW VFWPASAGGP AAVSPLSPVD RQPMQPQNYQ RQPASDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISIAM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG DFVKANGLQE GDFIVIYSDV KCGKYLIRGV KVRQPGPKSE TKRTGKSQRN QHANPPSAAM GNGSSSSLQV PQTVK // ID V4TV95_9ROSI Unreviewed; 241 AA. AC V4TV95; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR64488.1}; GN ORFNames=CICLE_v10010395mg {ECO:0000313|EMBL:ESR64488.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR64488.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR64488.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI535697; ESR64488.1; -; Genomic_DNA. DR RefSeq; XP_006451248.1; XM_006451185.1. DR GeneID; 18055946; -. DR KEGG; cic:CICLE_v10010395mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 230 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 241 AA; 26974 MW; 7D33550FAF888407 CRC64; MNQNSMANGN NYPEELKKQG AAALALTCIK NRRLDKKAKA NLHKYLKTTY LGKSISVQVN NNAAEINTSS SSPSSTAEAA NLNLVEDNGA HGDGYVDGDD DYKPPDIPPV RNLNGVIGNC SKPLEKKLTN TDLKVNQCRL SMNRGKVLEL LVPLLNEEEY RVLKEGIPVT VYDLDGNAFP MSFKVWSESK YYVLTSGWTK FHQNKGLADK HVVTLWMFRH AETQKLCFVI SWREVIAKKI K // ID V4U089_9ROSI Unreviewed; 642 AA. AC V4U089; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10019257mg {ECO:0000313|EMBL:ESR57455.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR57455.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR57455.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR57455.1; -; Genomic_DNA. DR RefSeq; XP_006444215.1; XM_006444152.1. DR GeneID; 18048162; -. DR KEGG; cic:CICLE_v10019257mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 77 179 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 543 625 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 77 179 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 642 AA; 71290 MW; 2172CDBB011A9620 CRC64; MEQVEAYNSQ DDKAELPIYN LPPKILCEVV YAQLKAEPGT DEVFAQITLL PRPEIDELSL EVGNSPPLPP KLNVCSFSKK LTPSDTSTHG GFSVPKRHAD ECLPPLDMSK DPPLQELVAK DLHGLEWRFR HIYRGQPKRH LLTSGWSVFV TSKKLVAGDV CIFLRGGDGE LRVGVRRAMK LQNNASTSVI SSLSMQHGIL AGAFHAISTG TRFTVYYHPW TRPAEFLVPF SQYMKSAEID YSIGTRFRMV FEGEECADQR IAGTVVGTED VDHIRWPASE WRCLKVKWDA TTDSITRPAR VSPWNIEPIE RTHKRPASVQ HQQKRLRPND ASSPWFSSLF RVFQGQENRV TGVKALGAAK TPLLPSLVRP PNPVWAQMQS GLENKLKFPM HDPFYMCLNR MVSLPGGSLM SPGLSNHWPA SPFAPYEVCE TAAQSKNLSV PNASSENSGS QMCMALELKD ENRTPLAQPN GGSRYMLFGV NLVNSPPELP SPQMATSNEL ESPCSVPPTS QSSISETIQV SEPSKSVSGI LSEKQCKNCY VSRSCTKVIK FGTALGRSVD LTRFHGYDEL ISELDQMFDF NGSLIDGNSG FHIAYMDDEG DMMLVGDNPW QDFQCAVRRM FICPKEDIDG VIPSSPNPTP PQ // ID V4U526_9ROSI Unreviewed; 332 AA. AC V4U526; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR59165.1}; GN ORFNames=CICLE_v10017535mg {ECO:0000313|EMBL:ESR59165.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR59165.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR59165.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536312; ESR59165.1; -; Genomic_DNA. DR RefSeq; XP_006445925.1; XM_006445862.1. DR GeneID; 18053018; -. DR KEGG; cic:CICLE_v10017535mg; -. DR KO; K09287; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 103 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 172 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 103 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 172 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 332 AA; 38164 MW; D125E2857912112E CRC64; MEEDASSMVS NAKTNANNTE ASDSNNSTSG LQPAPKRMRH GKNVSLVKFK GVVPQQNGHW GAQIYANHQR IWLGTFKSER EAAMAYDSAA IKIRGGDSHR NFPWTDTNNQ EPNFQNQYST EAVLNMIRDG TYQPKFADYL RVQSQREDNN SNASLNQIMV HGDEQFAYRQ LFQKELTPSD VGKLNRLVIP KKYAVKYFPF ISENAEENAI NGGVDDMELV FFDKLMRPWK FRYCFWRSSQ SYVFTRGWNR FVKEKKLKEK DIITFYACEC ANGAKEGQNF FLVDVIHCEG QNCNVVKKPV QLEQITGKIF SYNEKESNSE EKGFKLFGVQ IN // ID V4U6Y0_9ROSI Unreviewed; 401 AA. AC V4U6Y0; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR57936.1}; GN ORFNames=CICLE_v10020450mg {ECO:0000313|EMBL:ESR57936.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR57936.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR57936.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR57936.1; -; Genomic_DNA. DR EMBL; KI536661; ESR57937.1; -; Genomic_DNA. DR EMBL; KI536661; ESR57938.1; -; Genomic_DNA. DR RefSeq; XP_006444696.1; XM_006444633.1. DR RefSeq; XP_006444697.1; XM_006444634.1. DR RefSeq; XP_006444698.1; XM_006444635.1. DR GeneID; 18047067; -. DR KEGG; cic:CICLE_v10020450mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 237 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 237 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 45181 MW; 4E26031D3D895D07 CRC64; MMNFVQEEKG NSNNNNEEDQ DEDHQKERIK LPFSVSSSSS SVSSSKYKAF VPHHHQNSWL LGPIDSQEAA TNFDNREDLM DLSLGNNNNN NEDQPHKHSG NINNANVANG TGSSTTGESS GMYRSIEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKA WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDTVSFQRG VGELGKDRLY IDWRRRPDVH HVPDPTTLAQ MQFQNQLRFQ QSLRWGTRLY SLPQSLSNYG PFSYNTIHNP YYQHHQQQQI LGFGGNASST MPVQYYLRPS SVSQQIEGGH MPMVIDSVPV VVPGKTASST AAKRLRLFGV NMDCPTQDDQ SPATSSSSTR QAAASEYSSK GKSSLSFDLD L // ID V4U7I5_9ROSI Unreviewed; 898 AA. AC V4U7I5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10014200mg {ECO:0000313|EMBL:ESR60080.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR60080.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR60080.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536312; ESR60080.1; -; Genomic_DNA. DR RefSeq; XP_006446840.1; XM_006446777.1. DR GeneID; 18051575; -. DR KEGG; cic:CICLE_v10014200mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 765 849 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 898 AA; 99060 MW; 4624FE5AC1A7A34F CRC64; MRLATSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPN LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QTPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS GLPSFHGMKD GDMSINSPLM WLQGGVGDQG IQSLNFQGYG VTPWMQPRLD ASIPGLQPDV YQAMAAAALQ EMRTVDSSKL ASQSLLQFQQ SQNVSNGTAS MIPRQMLQQS QAQNALLQSF QENHASAQAQ LLQQQLQRQH SYNEQRQQQQ QVQQSQQLHQ LSVQPQISNV ISTLPHLASS SQSQPPTLQT VASQCQQSNF SDSLGNPIAS SDVSSMHTIL GSLSQAGASH LLNSNASNPI ISSSAMLTKQ VTVDNHVPSA VSQCILPQVE QLGAQQSNVS ELTSLLPPFP GREYSSYHGS GDPQNNLLFG VSIDSSLMGQ NGLPNLKNIS SENESLSLPY AASNFTNNVG TDFPLNSDMT TSSCVDESGF LQSSENVDQV NPPTRTFVKV HKSGSFGRSL DISKFSSYDE LRGELARMFG LEGQLEDPQR SGWQLVFVDR ENDVLLLGDD PWQEFVNNVG YIKILSPLEV QQMGKGLSPV TSGPGQRLSS NNNFDDYVSR QELRSSSNGV ASMGSINY // ID V4U907_9ROSI Unreviewed; 886 AA. AC V4U907; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR62467.1}; GN ORFNames=CICLE_v10014219mg {ECO:0000313|EMBL:ESR62467.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR62467.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR62467.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536312; ESR62467.1; -; Genomic_DNA. DR RefSeq; XP_006449227.1; XM_006449164.1. DR GeneID; 18052656; -. DR KEGG; cic:CICLE_v10014219mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. DR PROSITE; PS01359; ZF_PHD_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 337 438 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 565 615 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 337 438 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 886 AA; 97142 MW; 2B4869A45286B384 CRC64; MSSSSKICFN KECKELKSER PRKGWLLRGG EFAELCDRCG SIYEEGRFCD TFHVNASGWR CCESCGKRVH CGCITSVHAF TLLDAGGIEC MTCARKNVLV APTPSWPPSL FYQTPFPERI KDLSVKNWTQ LAGSGPVPWR QAPSLFNSSI PQPELRPRLP YEVDLSAGID RINASERLSV PSLEKRKLED FSERLMNGGL KSGSRDIPEN ANAGSNCDMQ PSSCLNKPQQ SSTLKDDSST PHFGLAVSYA SPSETNSQIG VSGSHLRPVV QPPLVKQFHG NLPNGADSLG ETQVRNGRPR VDARGRSQLL PRYWPRFTDQ DLQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLKVQDSK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDIVT FSRLEPEGKL VMGFRKASSA SASDQDNEAN KAGTGIPANG HAELADPSSW SKVDKSGYIA TEALGAKSSI SRKRKNTTLG SKSKRLKIEN EDVIELKLTW EEAQGLLRPP PNNVPSVVVI EGYEFEEYED APILGKPTIF ATDNVGEKIQ WVQCEDCSKW RKVPANARLP SKWTCSGNLW DPERSVCSAA QELREEQLED LIAPNNPASS KKLKTAKQEP DCVEALEGLD TLANLAILGE GEGLTASSQA TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCLTVK RRFHTLMLRR EKKQSEKDAE TSRKKQQQQK LPVPEKSADD DPLSCSKTGN NSPNEKKVVS EGSDDDSSRI KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMIRLLQDAT EKYLRQQRLS SSGVNTSSVE NEGLQGGVTG EKISNGITLD GSHQDTDEDH HGSLSVKASA SISATG // ID V4UAJ3_9ROSI Unreviewed; 458 AA. AC V4UAJ3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36284.1}; GN ORFNames=CICLE_v10028399mg {ECO:0000313|EMBL:ESR36284.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36284.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36284.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36284.1; -; Genomic_DNA. DR RefSeq; XP_006423044.1; XM_006422981.1. DR GeneID; 18034512; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 94 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 94 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 394 449 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 458 AA; 52330 MW; 5207CBD1C72D81DA CRC64; MEEQSEPETP LLQTTKIKRK KTAESKMKLT QVSEKPLDPD SAPELGAFDS SKESKSRRKR AMIDDLYDHA KVNSPVIERA EEVRANLAPS YPSFWKAMVK SNVSHGFWLH LPMRFCKFNM PKIDTVFIVE NESGEEYKIN YISQRTALSG GWKAFSDANQ LYEGDVLVFH LVEPTRFKAY IVRANGFGNV NADAKPLNSV PMDDELEVAP KDHSEKRVKK NKRAKRVKPP PGFHRDNNQS NSLMLLETNN GHVEDQFNND TEDLGPNKVL PHSESSNFKE MKSIDDFTIL VDGLAIDCEL SDQHRNKYYD LCCSQNSFLH DHLLKSINCK LAAEIITQTV NIAEAIRACN LSTSRADYEI WDKTLKGFEL LGMNVGFLRA RLNRLMSLAF ESEESEVSKR LREVSAEQAR AEEEMRSLEL KLLRLKETMG RLDSEVESLK VKAEKHELKF QEEANAPW // ID V4UAQ6_9ROSI Unreviewed; 287 AA. AC V4UAQ6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR36349.1}; GN ORFNames=CICLE_v10028984mg {ECO:0000313|EMBL:ESR36349.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR36349.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR36349.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR36349.1; -; Genomic_DNA. DR RefSeq; XP_006423109.1; XM_006423046.1. DR GeneID; 18035646; -. DR KEGG; cic:CICLE_v10028984mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 52 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 185 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 52 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 185 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 33355 MW; 00962A42CE3B4A29 CRC64; MWFVELKKCN KQLWFDIGWH EFIEHCSIHS GYFLIFKYQG NSNFNVYIFD LAISEIEYPS LEEPSDSKQC HVPIEKDKEK NSSLRILPPL RAPCPDPFSP ATKVLDEGVC YKCNKDSTSG VKIEYLHIPK DEHNQETAFH CPQDKGIQFK NTSDEVGLRW RAVTTEEKKR TVHAAEMYKS NNPLFRVILR PSYVYRTLLL HVPTSFARKY LNGIKGYITI IDSNGKQWPV RCIFKNGGAK FSKGWPEFVW ENNLDESDVC VFELIKSNDV TLKATIFRVL EDARPVY // ID V4UET9_9ROSI Unreviewed; 743 AA. AC V4UET9; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10014391mg {ECO:0000313|EMBL:ESR62660.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR62660.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR62660.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536312; ESR62660.1; -; Genomic_DNA. DR RefSeq; XP_006449420.1; XM_006449357.1. DR GeneID; 18053390; -. DR KEGG; cic:CICLE_v10014391mg; -. DR KO; K14486; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 158 260 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 158 260 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 743 AA; 80512 MW; 92BEB218568ADA79 CRC64; MVGLIDLNTT EDDENPSSGS LSPSSSSASA LSASGFALAP ASASASGVSL ELWHACAGPL ISLPKRGSVV VYFPQGHLEH VSDFSAAASA AYDLPPHLFC RVADVKLHAE AASDEVYAQV SLVPDELIEQ KVREGKIEED GDEESVEVVA KSSTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS QQRPSQELVA KDLHGLEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAP HVKSGATFPS FCSQQSSPNS VTEVVDAIAR KRAFSISYNP RASASEFIIP VNKFLKSLGH SFAVGMRFKM RFETEDAAER RYTGVIMGVG DMDPVRWPGS KWRCLLVRWD DVESNRHTRV SPWEIEPSGS VCGSNNLITS GLKRTRIGLP SGKPEFPVPD GIGVTDFGES LRFQKVLQGQ EILGFNTLYD GGDCQNLHPS EVRRGIPGSN GSGIAAIGDG SRNLQVKSDI SYKGIGIGFG ESFRFHKVLQ GQEIFPKSPY GRAPTNNEAR SIGSLGISDG VPVSGSRNRW SAVVPGYNTH MSPSAPPVQV SSPSSVLMFQ LASNPISNYN PPYSLNDQEK EQRVNCQSFF HNSEIYGGKH ASSSFLDHSF VGGDQEVMDS IGQSNEHISP PLVGQPTVRG SQDLVSSCKG SCRLFGFSLT EERHVANIED NAAPVASPLN PRSSFLSHVG QQFHPKPPVM SKATGSNCTN GIMQHCLGNY DIY // ID V4UEW1_9ROSI Unreviewed; 808 AA. AC V4UEW1; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10027839mg {ECO:0000313|EMBL:ESR37859.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR37859.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR37859.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536978; ESR37859.1; -; Genomic_DNA. DR RefSeq; XP_006424619.1; XM_006424556.1. DR GeneID; 18035349; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 172 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 679 761 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 172 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 808 AA; 89662 MW; 6206131CC6115D67 CRC64; MEFDLNHAAT TEGEKIAFCN GDCGKNNSGC VCYLNSSSSS SSCSANSSSS SSLYSSIYFE LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASSSAFPPIE VPNFDLQPQI FCKVVDVQLL ANKENDEVYT QVALLPQPEL EGLNLEAKQL ENLGVDEEGG GRSPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GKDGELRLGI RRSVQPRNGL PDSILSKQNS YPNVLSVVAN AVSTKSMFHV FYSPRATHAD FVIPYQKYVK IIMNPICIGT RFKMRFEMDD SPERRCNGVV TGITDLDPYR WPNSKWRCLM VRWDECIGSD HQEQVSPWEI DRSVSLPPLS IQSSPRMKKL RTGLQAPPPD YPVSARGGGV LDFEESVRSS KVLQGQENVG FVSPLCGCDT VNHPLGFEMR APAHQSLALN GIRKDNINEL VRARPTSYTG FVESNRFPKV LQGQEICPLR SLTGKVDLNL GTWGKPNFGC NSMNMYQASK PNIYPPPSES LSNMFFPYGD MPKTVQHHTM RPYASNLQRE NVKLNSSSIQ MPAIGAEIRK ENLLNEHKPV ENIPTPTFKA NMTSHKDGSF NGTAAGCKLF GFSLTSETPT PSSQSPGKRS CTKVHKQGSL VGRAIDLSRL NGYNDLLSEL EHLFNMEGLL RDPAKGWRIL YTDSENDVMV VGDDPWHEFC NEVSKIHIYT QEEVEKMTIG TTDDTQSCLD QAPVIMEVSV SKSSSVSQPD SSPTVVRV // ID V4UIE3_9ROSI Unreviewed; 453 AA. AC V4UIE3; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR39109.1}; GN ORFNames=CICLE_v10025376mg {ECO:0000313|EMBL:ESR39109.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR39109.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR39109.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536925; ESR39109.1; -; Genomic_DNA. DR RefSeq; XP_006425869.1; XM_006425806.1. DR GeneID; 18036633; -. DR KEGG; cic:CICLE_v10025376mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 172 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 172 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 396 423 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 453 AA; 50350 MW; CD84EE95093474A6 CRC64; MKPSKKKGKI ILKLKKSPPD TSVTSVPGTV EPDSRGGGKT KSSKKNKDVV DGKCSPVEPK SPAMIRAEEV QSNLEPQFPS FAKSMVRSHV ASCFWMGLPG YFCKSHLPDK DTSVVLEDES GIQYTAKYFA EKTGLSAGWR QFSTAHNLVE GDVLVFQLIA PLKLKVYIIR ANDFTEVDGA LGLLNLDAPS KQNDTAELEI DNGEPIVVTN QNTKKKRKKS LPLAVVQKKN KKSVQGRSAS NLGQPAEQSE NDSEEVGSEV LEGFKISTPP VQFKDVTSLD NFNILVDGLV VDSELPEDIR CNYYKLCCSQ NAFLHENLAQ GINFKLIVGT ISEIVNIADA LRACKFTTSR DEFAMWDKTL KAFELLGMSV GFLRARLRRL QRLAFESEGA EDTRRYIEAK AQQSQTQDEI RNIEARLVEL KGAWQRFDAE ISSLKSSAES YELKFREVAN APW // ID V4UP50_9ROSI Unreviewed; 1134 AA. AC V4UP50; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10007286mg {ECO:0000313|EMBL:ESR66100.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR66100.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR66100.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI535697; ESR66100.1; -; Genomic_DNA. DR RefSeq; XP_006452860.1; XM_006452797.1. DR GeneID; 18055379; -. DR KEGG; cic:CICLE_v10007286mg; -. DR KO; K14486; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1008 1101 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1134 AA; 126742 MW; 10B37611EA91C550 CRC64; MKPPANGFLP SSAEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE NDFIPNYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVARD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITSISDL DPLRWKNSQW RNLQVGWDES TAGERPSRVS LWETEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDATSSI FPGLSLVQWM SMQQNNQFPA AQSGFFPSMV SSTGLHSNFG TDDPSKLLNF QASALAAPNL QFSKANPQNQ VNQLPQSPIA WTQQQQLQHL LQNPLNQQQQ QHPQLHQQRQ QQQQLLHPQQ SQQQQQQQQN HHHHNQQPPP PPQLQPSPTP PHSQSQSQSP VPQRPQQQPQ QQQQQPQQQI FLPTHVNNGV LVPNANQNVQ QPTVYSQLQQ PQLLTSNTQA PQGILSNNKN SYQLTSLPQD SQFQQQMEQS TGPLQRQQQQ SQLQQSSLQF LQQSLAQRAQ QQPQVQQLAQ QSMSDQQLQS QLQQKLQQQQ QQQLLSPAGS LLQPQLLQQQ LAHQQNQQLS QLPPSQNHQQ QLSNNLSASV LVQPQQLPMN QPQNQNRPLT GTRAHSNHTD GDAPSCSTSP SSNNCQISPS NFLNRNQQGP AMLMGDSVVE PSSNLVQELH SKSDARIKHE LPISKGPEHL KYKGSMTDQV EASSSGTSYC LDPGNIQQNF SLPTYCLDGD AQSHPRNSLP FVANIDGMAP DTLLSRGYDS QKDLQNLLSN YGGTPRDIET ELSTAAISSQ SFAVPNIPFK PACSNEVGIN EAGVLGNGLW ANQTQRMRTF TKVQKRGSVG RSIDVTRYKG YDELRHDLAR MFGIEGQLED PQSSDWKLVY VDHENDILLV GDDPWDEFVS CVQSIKILSS AEVQQMSLDG DLGNLPVPNQ ACSGSDSGNA WRHYDDNSAA SFNR // ID V4UQ48_9ROSI Unreviewed; 1097 AA. AC V4UQ48; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10007292mg {ECO:0000313|EMBL:ESR66430.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR66430.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR66430.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI535697; ESR66430.1; -; Genomic_DNA. DR RefSeq; XP_006453190.1; XM_006453127.1. DR GeneID; 18055510; -. DR KEGG; cic:CICLE_v10007292mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 985 1069 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1097 AA; 120674 MW; C0D88F73C69268D1 CRC64; MKTPANTAGA ASNSGEGGGG EKKTINTELW HACAGPLVNL PAAGTHVVYF PQGHSEQVAA SMKKDIDGQI PNYPNLPSKL LCILLNVTLH ADTETDEVYA QMTLQPVPSY DREALLRSDL ALKSNKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELMARDLHDN IWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPANL SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVVPLAKYYK AVHSNQISLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG EKRNRVSIWE IEPVTAPFFI CPPPFFRSKH PRQADDDASD LDNVFKRTMP WIGDDFGVKD SQSLPGLSLV QWMNMQQNPS LANAMQSSYM HSLPGSILQN LNGGLSQMPQ QNNLQYTGQS LPQQVPQIDQ LAKLPSTVNP LGSNILPQQP LGDISQQSRQ NMITQNLPSG PVQAQVLQPQ NLVQTSNILQ QQPSIQNPQL PANLPQNLQQ QQQQQHIMGQ NQQQNLMQTQ LPDPINQNLQ MSDKQIQLHL LQKLQQQRQS LLSQQSALQQ PAQLIQLQDQ QRQLLDASQS FSRSGTPTQM LEMHQVTPTS LPQSNIMSQQ IANSGSLNNV QFSQPPQQPK LEQQQPGILP QMPGHMGLPA SHIINPVSTA GNSALTGAAG VGQSVITDDN PSCSTSPSTN NCQRLIQPTI NSRTHRSAGI GEEVAQSASA LLNPSALETM PSNANLVKDL PHKSDVKPSV NISKTQNQGF FTPQTYLNGA ATQTDYLDTS SSTTSVCLSQ NDVHLQQNNN SLSYNLQSTL RDTSQVGEVP VDPRSNIPYG ANIDGPLGSM NPDPLLTKGM MGLGKDFSNN ISSGAMLANY ENSKDAQQEL SSSIVSQSFG VPDMAFNSID STINDSSFLN GGPWAPPPQF PQRMRTYTKV YKRGAVGRSI DITRYSGYDE LKQDLARRFG IEGQLEDRGR IGWKLVYVDH ENDVLLVGDD PWKEFVNCVR CIKILSPQEV QQMSLDGDFG NSVLPHQACS SSDNGNA // ID V4UZN4_9ROSI Unreviewed; 283 AA. AC V4UZN4; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR44934.1}; DE Flags: Fragment; GN ORFNames=CICLE_v100009761mg {ECO:0000313|EMBL:ESR44934.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR44934.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR44934.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR44934.1; -; Genomic_DNA. DR RefSeq; XP_006431694.1; XM_006431631.1. DR GeneID; 18041849; -. DR KEGG; cic:CICLE_v100009761m; -. DR KO; K14486; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 243 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 141 243 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 283 283 {ECO:0000313|EMBL:ESR44934.1}. SQ SEQUENCE 283 AA; 30926 MW; 3BBC37E34E594420 CRC64; MVGLIDLNKT KDDENPSSGS LASASASASG VSSELWHACA GPLIFLPKRG SVVVYFPQGH LEHVSDFSAA ASTAYDLPPH LFCRVADVKL HADAASDEVY AQVSLVHDEL IEQKVRKGKI KEDGDEESVE VAAKSSTTHM FCKTLTASDT STYGGFSVPR RAAEDCFPPL DYMQQRPSQQ LVAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG EDGELKIGIR RAAQVKNGAT FPSFCNQHSS TSSVTEVVDA IARKRAFSIS YNP // ID V4V7F6_9ROSI Unreviewed; 241 AA. AC V4V7F6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR48039.1}; GN ORFNames=CICLE_v10002314mg {ECO:0000313|EMBL:ESR48039.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR48039.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR48039.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR48039.1; -; Genomic_DNA. DR RefSeq; XP_006434799.1; XM_006434736.1. DR GeneID; 18042191; -. DR KEGG; cic:CICLE_v10002314mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 27326 MW; 2D8718A46F106DAD CRC64; MVKAKPSYEE CRLKRVEENK KRMEALNLPM LCQALRKKPS IEPSHEKQVK PRTVKKQEDV VLRRSSRVAN KPAPVYNGVT LVRVEIPRRI SSKRDLSNRV YASDEARAGA VEKAEKLEAR LGPEHPTFIK PMLQSHVTGG FWLGLPGYFC RRNLPKRDEA ITLIDEDGDE YPTVYLPRKT GLSGGWKAFA VAHGLVDGDA LVFQLIRNTA FKVYIIRVNG SDQMKNLLNS KYQISEPVQS I // ID V4V7P7_9ROSI Unreviewed; 467 AA. AC V4V7P7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR48124.1}; GN ORFNames=CICLE_v10001063mg {ECO:0000313|EMBL:ESR48124.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR48124.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR48124.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536799; ESR48124.1; -; Genomic_DNA. DR RefSeq; XP_006434884.1; XM_006434821.1. DR GeneID; 18043055; -. DR KEGG; cic:CICLE_v10001063mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 22 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 353 451 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 22 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 353 451 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 467 AA; 53032 MW; 0560B5C8E492EE9E CRC64; MGEACNECRS WEEEIYWNHF QCIHFIQYLH TGFDHQLAIP EKVARNLRKK LPVTVSLKAP SGFTWVVGIT TRDHTLYFSH GWPEFVKDHF LGENDILFFK YNGGSHFDVL MFDGQSQCEK AVSYFVKKCG HTEHSNRRET RRKIRETSVE GIPNSSHCDV DITPPEKGSD DDINKIPVGQ PIVTPASSKR IRRDDTSNEF VRSRRNSYFV KKRKHKDHGS VSQTKRRIGE SCVEGIPNSS DCDVDVTLPE KASNDEINKI PVGEPIVTLD SSKRIWRVDS SNELAHTRRS SRSKTVSTNF AEMLKTKTGD EQTIINGNVA LSPPFTSNRR PVTQDEKNNA LLMAQAVSTT DSFTVVMRPT HVYKRFYMAI PASWMSKYLT LENQDVILRL NEKTWITRFQ FCKPRCSGGL SGGWKNFAVD NHLDEFDVCV FGPDNPGTKP MVLNVSIFRV VNAVVPLTQV APASLQL // ID V4VCW7_9ROSI Unreviewed; 665 AA. AC V4VCW7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=CICLE_v10030696mg {ECO:0000313|EMBL:ESR50184.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR50184.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR50184.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR50184.1; -; Genomic_DNA. DR RefSeq; XP_006436944.1; XM_006436881.1. DR GeneID; 18043475; -. DR KEGG; cic:CICLE_v10030696mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 633 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 665 AA; 74665 MW; D942D22BFCD92D4D CRC64; MSRQPPTQEL AAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAV STGTMFTVYY KPRTSPSEFI VPYDQYMESI KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDADPQRWR DSKWRCLKVR WDETSTIPRP ERVSPWKIEP ALAPPALNSL PMPRPKRPRS NMLPSSPDSS VLTREGSSKL NVDPSSATGF SRVLQGQEFS TLRGNFAERE SNESDTAEKS VVWPPSLDDE KIDVVSASRR YGSENWVPPG RHEPVYTDLL SGFGANADPS HGFSSPFADA VPVRKSVLDQ EGKFNLVARP WSLMPSGPSL KMPESNAKVP VQGGDVNYQV RGNVRYGGFG DYPMLNGNRV EHSHGNWLMP PLPPSNFENS AHSRELMPKS AMVQDQEAGK SKDCKLFGIP LFSNHVMPEP VVSHRNTMND PAGNLDQQFR AFESDQKSDH SKSSKLADDN QVFNEHEKLS QPSQTHTKDV RSKTQCGSTR SCTKVQKQGI ALGRSVDLSK FNNYDELIAE LDQLFEFDGE LMAPKKNWII VYTDDEGDMM LVGDDPWQEF CGMVRKIFIY TKEEVLKMNS VSFSSKGEDS PMNGDGIDAK EVKQPLPLAS NAENF // ID V4VES5_9ROSI Unreviewed; 377 AA. AC V4VES5; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR50974.1}; GN ORFNames=CICLE_v10031846mg {ECO:0000313|EMBL:ESR50974.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR50974.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR50974.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536726; ESR50974.1; -; Genomic_DNA. DR RefSeq; XP_006437734.1; XM_006437671.1. DR GeneID; 18044020; -. DR KEGG; cic:CICLE_v10031846mg; -. DR KO; K09287; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR PRINTS; PR00367; ETHRSPELEMNT. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 125 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 207 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 125 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 207 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 377 AA; 41913 MW; 75A47AC540C8A154 CRC64; MKREEMDGSC MDESTTTDSA STSPPITFPA SIPPTKSPES LCRVGSGASS VILDSEAGVE AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDI AAQRFRGRDA VTNFKQMSCA GTSSDEGDIE MAFLSSHSKS EIVDMLRKHT YNDELEQSKR NYGLDANGKR VIKHGEGDGV ATAFGSDRVL KARDQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSGST SKGLLLNFED VTGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFHRSTGGDR QLYIDWKART GPVENPVEPV QMMRLFGVNI FKIPGNGLVG VDKIGCNINN NNDGKRLREM ELLSIECSKK QRMIGAS // ID V4VKM6_9ROSI Unreviewed; 554 AA. AC V4VKM6; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR53264.1}; GN ORFNames=CICLE_v10019558mg {ECO:0000313|EMBL:ESR53264.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR53264.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR53264.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI536661; ESR53264.1; -; Genomic_DNA. DR RefSeq; XP_006440024.1; XM_006439961.1. DR GeneID; 18050177; -. DR KEGG; cic:CICLE_v10019558mg; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 554 AA; 61446 MW; 76228C3A219D826A CRC64; MGGKLEACAE CTKKCLLVHR NKAKLSPVIH SFFKIMIGKD CSEILFLPPK FAEMVSAVIG KKAVIEDSSG DCWEVSVSNV DGSPAFRQGW NAFSAYHRLE IGDFLVFDYI RGSRFIVKIF DKTGCEKQKI SLTTNKRKRY RTRTNFTDRE GQCYTADTGS MSKERKNART TTNSTDRDGQ CHTADKDSMS KERSRPSIFS VSDEEMSESQ CELNDVEKAS TSNGKISGKR PLSVSRANFL EDPYYLIDRD LGDQQREDRC SVFDLSHFEM VGNNCGTAIR DKMKDGDDYS HHADASLISE FEDVLVNKYL VDKEIPNRVA ASDASDMDVM KNNGVEKTEQ IISRVELQKD GGNNSNVSSG VSQKCHGAEE ESKALSKSKR KTDRATVSPM ECNQSEHLKF IGTFRESSVQ VTTGMQNCRF VEPQTDGWTS SSSSRGVPKK CHGGVEELKA VSKSLTEIDW AMVSPVEYNR SAQLKLVGQY GESRVQVTSG MQNCQFELLT KVHQGMVSQT GCTSLGDSNQ SAQLNFVGEF GGSSVLVTHG MQKGQFGKRV FLVA // ID V4WJE7_9ROSI Unreviewed; 316 AA. AC V4WJE7; DT 22-JAN-2014, integrated into UniProtKB/TrEMBL. DT 22-JAN-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESR66904.1}; DE Flags: Fragment; GN ORFNames=CICLE_v10010403mg {ECO:0000313|EMBL:ESR66904.1}; OS Citrus clementina. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; OC Citrus. OX NCBI_TaxID=85681 {ECO:0000313|EMBL:ESR66904.1, ECO:0000313|Proteomes:UP000030687}; RN [1] {ECO:0000313|EMBL:ESR66904.1, ECO:0000313|Proteomes:UP000030687} RP NUCLEOTIDE SEQUENCE. RG International Citrus Genome Consortium; RA Jenkins J., Schmutz J., Prochnik S., Rokhsar D., Gmitter F., RA Ollitrault P., Machado M., Talon M., Wincker P., Jaillon O., RA Morgante M.; RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI535697; ESR66904.1; -; Genomic_DNA. DR RefSeq; XP_006453664.1; XM_006453601.1. DR GeneID; 18054255; -. DR KEGG; cic:CICLE_v10010403mg; -. DR KO; K09287; -. DR Proteomes; UP000030687; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030687}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030687}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 44 99 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 166 280 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 44 99 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 166 280 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 316 316 {ECO:0000313|EMBL:ESR66904.1}. SQ SEQUENCE 316 AA; 36374 MW; 4C312F0C82756A9A CRC64; MEEEMLSIVS NGETNVIPEL SDSISSTPLI PATKRFRHTS AVSKFKGVVP QQNGHWGAQI YANHQRIWLG TFKSEKDAAM AYDSAAIRLR SVDSHRNFPW TKITIEEPNF QSHYSTEAVI NMIRDGSYSS RFADFLRSHS RTLEEDVIFT QMRAGTDGWM MCRQLFQKEL TPSDVGKLNR LVIPKKYAVK YFPQISERVE EHAENDKADD VQLDFHDKSM KLWKFRYCYW KSSQSFVFTR GWNRFVKENQ LKANDTICFY LCELRDIAKG TKTFCMIDAN KGENGGASAE VSGPYVDMKV DLQLQLGQNI VDDKKE // ID V7AEE9_PHAVU Unreviewed; 430 AA. AC V7AEE9; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW03899.1}; GN ORFNames=PHAVU_011G050600g {ECO:0000313|EMBL:ESW03899.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW03899.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW03899.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW03899.1; -; Genomic_DNA. DR RefSeq; XP_007131905.1; XM_007131843.1. DR GeneID; 18615209; -. DR KEGG; pvu:PHAVU_011G050600g; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 296 391 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 296 391 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 430 AA; 48953 MW; 8E997F564E79F6D0 CRC64; MTHPSFHKLL LPSTLQPNQL RLPDDFMRKY GRELSPIVTL SVPDGSVWRV GLKKADNKYW FLDGWQEFIQ HYSIGVGYLL VFRYEGKSSF NVHVFNLATS EINYQSAMRC SNEGPHFANL LKFFEEMDDE DSIEILDSSP SHLAPSSLQN KVLAGSVDKM SPAKCYTPPA LQNLFNGSKL NSINWGEGGD AHCSKSVNSL DNLLTRDIGV QFNAVEFKKS TEELKLRASM EERMKKTARK KRKSEGQEAS AEQEEEVEMR FRFYESASAR KRTVTAEERE RAINAAKAFE PPNPFCRVVL RPSYLYRGCI MYLPSCFAEK HLNGVSGFIK LQISNGRQWP VRCLYRGGRA KLSQGWFEFS LENNLGEGDV CVFELLRMKE VVLQVSIFRI TEDVGLLSPP PLQQNQKMSS AKLLNTPLQQ HLTSTKIIRN // ID V7AF48_PHAVU Unreviewed; 404 AA. AC V7AF48; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW03900.1}; GN ORFNames=PHAVU_011G050600g {ECO:0000313|EMBL:ESW03900.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW03900.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW03900.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW03900.1; -; Genomic_DNA. DR RefSeq; XP_007131906.1; XM_007131844.1. DR GeneID; 18615209; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 270 365 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 270 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 404 AA; 45924 MW; 454AFF22B503D2CB CRC64; MRKYGRELSP IVTLSVPDGS VWRVGLKKAD NKYWFLDGWQ EFIQHYSIGV GYLLVFRYEG KSSFNVHVFN LATSEINYQS AMRCSNEGPH FANLLKFFEE MDDEDSIEIL DSSPSHLAPS SLQNKVLAGS VDKMSPAKCY TPPALQNLFN GSKLNSINWG EGGDAHCSKS VNSLDNLLTR DIGVQFNAVE FKKSTEELKL RASMEERMKK TARKKRKSEG QEASAEQEEE VEMRFRFYES ASARKRTVTA EERERAINAA KAFEPPNPFC RVVLRPSYLY RGCIMYLPSC FAEKHLNGVS GFIKLQISNG RQWPVRCLYR GGRAKLSQGW FEFSLENNLG EGDVCVFELL RMKEVVLQVS IFRITEDVGL LSPPPLQQNQ KMSSAKLLNT PLQQHLTSTK IIRN // ID V7AF92_PHAVU Unreviewed; 791 AA. AC V7AF92; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_011G073600g {ECO:0000313|EMBL:ESW04184.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW04184.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW04184.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW04184.1; -; Genomic_DNA. DR RefSeq; XP_007132190.1; XM_007132128.1. DR GeneID; 18615445; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 663 745 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 791 AA; 87824 MW; 4B3A640E8520208C CRC64; MEFDLNHEVT EVEKNAFCDR ECEKDAGVSC WSSSTSSSSS SSSARVSSSY LELWHACAGP LTSLPKKGNV VVYFPQGHLE QVASFSPFTP MEIPSYDLQP QIFCRVVNVQ LLANKENDEV YTQVTLLPQA ELEGMNSEGK ELEEFGAEEE GDERSPTKST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK NLVSGDAVLF LRGENGELRL GIRRAVRPRN DLPESVIGSQ NCYPNVLSSV ANAVSTKSKF HVFYSPRASH ADFVVPYQKY VKSIKSPLST GTRFKMRLEM DESQERRCNS GTLIATSDLD PYRWPKSKWR CLMVRWDEDF ESNHQDRVSP WEIDPSAPLP PLSIQSSPRL KKLRTGLQVA SPSHHITARG SGLVGFDESV RSPKVLQGQE NTGFVSLYYG CDTVTKPLGF EMSTPSHPNL GSAEVRKVTS SELSSVHPFS YAGFVETNRF PRVLQGQEIC PLKSLTGKVD LNLGAWGMPN LGFNLHQATK PNFQPTLFPY GDIHQAGQAS LFCSKSTTFQ RENVPFNKPS TQAGIIVNEV GRPELPNEHK LQDNLSAAAS LGAANMGVPN DNNVQGKVNA CKLFGFSLSG ETTAQNLQNS AKRSCTKVHK QGSLVGRAID LSRLSSYNDL LSELERLFGM EGLLKDPDKG WRILYTDSEN DIMVVGDDPW HEFCDVVCKI HIYTQEEVEK MTIGMISDDT HSCLEEAPII TEASKSSSVG QPDYSPTAVR V // ID V7AFF7_PHAVU Unreviewed; 696 AA. AC V7AFF7; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_011G080100g {ECO:0000313|EMBL:ESW04259.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW04259.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW04259.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW04259.1; -; Genomic_DNA. DR RefSeq; XP_007132265.1; XM_007132203.1. DR GeneID; 18615514; -. DR KEGG; pvu:PHAVU_011G080100g; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 105 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 584 664 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 105 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 696 AA; 76366 MW; 11A90642E372B28B CRC64; MKEGEKVLDP QLWHACAGGM VQMPKVNSKV FYFPQGHAEH AHTNIDLRVP PHILCNVEAV KFMADPETDE VFAKLSLVPL RNSELGPDSE GGADAAEASE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVVAKDV QGETWRFRHI YRGTPRRHLL TTGWSSFVNQ KKLVAGDSVV FLRSENGELC VGIRRAKKGI GCEVWNSASG SGSGSVGGSG NCGIGPYGPF SFFLREESKS LRNGGGGGGN LSGRAKVRPE AVVEAVTLAA GNKPFEIVYY PRASTPEFCI KASSVRAAMR IQWCSGMRFK MAFETEDASR ISWFMGTIAS VQVLDPIRWP NSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNLPVINFT PFSPPRKKLR FPQHPEFPLD VQFPIPTFSG NHLGPNHPLC GFSDNPPAGI QGARHAQIGS SLSDLHLNKK LQLGLLPSNI HQLGVYSGIS NGNTTTNHDK SKESLSHLLS MGKSSNSLEK PDDVKKHQFL LFGQPILTEQ QISRDVLSRG KKSPDDVKDK EKCVLGDSQS ALSRQFSSGK ASAAELSWQL GLDTGHCKVF LESEDVGRTL DLSRLGSYEE LYRRLSYMFG VERSEILNYV FYYDAKGAVK QTGDEPFSDF MKTAKRLTIL TDSGSKNVKR AFITGTRNGE HGLDASNKTG PLSIFA // ID V7AGC2_PHAVU Unreviewed; 364 AA. AC V7AGC2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW03898.1}; GN ORFNames=PHAVU_011G050500g {ECO:0000313|EMBL:ESW03898.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW03898.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW03898.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW03898.1; -; Genomic_DNA. DR RefSeq; XP_007131904.1; XM_007131842.1. DR GeneID; 18615208; -. DR KEGG; pvu:PHAVU_011G050500g; -. DR PhylomeDB; V7AGC2; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 110 132 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 364 AA; 43010 MW; D7E9C481A7A7AB5A CRC64; MSGAEKYPDF FKVFLQEQHY ERMLIPNAFV KLQGLQGRIP EDVLLRNRSE RVWHVKTRFF GDKLYFDDGW KIFHEENCLG NADFLVFRYD GVNEFRVTIL EISTQCEKTL VKIEEEEEGN EEERAAAQVE ETVITQEEQA EDCDIEDEED SQDQDYDDDN DDSDFDDHDH DDDDDENTEM EEESEEENSV GPVGYASQHY RKPYRRDTAS SSYPQTEEDT FKDDEFDPEM CIQPENNFFE AKLYRSRPNE LHIPGIAIQD FSLSFPEKIT LKCCQHCQRK DIQRNQLQDY HLNLAQQAPI RKRYLEVTGK VCRWQDDRIC IKGWANFSRR NKIKNNDVCI CEVISGEDQV VRTFLVHVIG TRRE // ID V7AGC6_PHAVU Unreviewed; 312 AA. AC V7AGC6; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW03903.1}; GN ORFNames=PHAVU_011G050800g {ECO:0000313|EMBL:ESW03903.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW03903.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW03903.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW03903.1; -; Genomic_DNA. DR RefSeq; XP_007131909.1; XM_007131847.1. DR GeneID; 18615211; -. DR KEGG; pvu:PHAVU_011G050800g; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 46 121 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 208 305 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 46 121 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 208 305 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 312 AA; 36396 MW; CCB74C1651087870 CRC64; MTMRDFSFYQ KALIIQGNGR ETWQMDYYQG NPVFFIIVNN TKLQKVPEGF LKHLNEDLPN AVLVSPTGDN WQITILKKGN NMYMQSGWPQ FLTDNSVMLD DFLLFTYHGG NCFHVQIFGK NGLERLCFKQ TRQDQVLIPS LVRTKKSTQR RTFSSSFLHQ AKSCKKGLSF SNKISFSKDF QKLKSSIKIE STEACNLADS FTSRNPHWKH LMTKCNVEDH CTLPIATEFA RKHIPEAVKQ IILWNTEGKF WEVVVTWFGC QNKRYTRFTT GWGRFVRDNR LMRGDTCIFE LEDENHLSVH IFRTGLCAPR LF // ID V7AH70_PHAVU Unreviewed; 792 AA. AC V7AH70; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_011G073600g {ECO:0000313|EMBL:ESW04183.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW04183.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW04183.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW04183.1; -; Genomic_DNA. DR RefSeq; XP_007132189.1; XM_007132127.1. DR GeneID; 18615445; -. DR KEGG; pvu:PHAVU_011G073600g; -. DR PhylomeDB; V7AH70; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 164 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 664 746 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 164 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 792 AA; 87895 MW; 1C50045A1B31E5BB CRC64; MEFDLNHEVT EVEKNAFCDR ECEKDAGVSC WSSSTSSSSS SSSARVSSSY LELWHACAGP LTSLPKKGNV VVYFPQGHLE QVASFSPFTP MEIPSYDLQP QIFCRVVNVQ LLANKENDEV YTQVTLLPQA ELEGMNSEGK ELEEFGAEEE GDERSPTKST PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK NLVSGDAVLF LRGENGELRL GIRRAVRPRN DLPESVIGSQ NCYPNVLSSV ANAVSTKSKF HVFYSPRASH ADFVVPYQKY VKSIKSPLST GTRFKMRLEM DESQERRCNS GTLIATSDLD PYRWPKSKWR CLMVRWDEDF ESNHQDRVSP WEIDPSAPLP PLSIQSSPRL KKLRTGLQVA SPSHHITAAR GSGLVGFDES VRSPKVLQGQ ENTGFVSLYY GCDTVTKPLG FEMSTPSHPN LGSAEVRKVT SSELSSVHPF SYAGFVETNR FPRVLQGQEI CPLKSLTGKV DLNLGAWGMP NLGFNLHQAT KPNFQPTLFP YGDIHQAGQA SLFCSKSTTF QRENVPFNKP STQAGIIVNE VGRPELPNEH KLQDNLSAAA SLGAANMGVP NDNNVQGKVN ACKLFGFSLS GETTAQNLQN SAKRSCTKVH KQGSLVGRAI DLSRLSSYND LLSELERLFG MEGLLKDPDK GWRILYTDSE NDIMVVGDDP WHEFCDVVCK IHIYTQEEVE KMTIGMISDD THSCLEEAPI ITEASKSSSV GQPDYSPTAV RV // ID V7AIH4_PHAVU Unreviewed; 340 AA. AC V7AIH4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW03901.1}; GN ORFNames=PHAVU_011G050700g {ECO:0000313|EMBL:ESW03901.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW03901.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW03901.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002298; ESW03901.1; -; Genomic_DNA. DR EMBL; CM002298; ESW03902.1; -; Genomic_DNA. DR RefSeq; XP_007131907.1; XM_007131845.1. DR RefSeq; XP_007131908.1; XM_007131846.1. DR GeneID; 18615210; -. DR KEGG; pvu:PHAVU_011G050700g; -. DR Proteomes; UP000000226; Chromosome 11. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 24 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 239 336 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 24 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 239 336 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 340 AA; 39032 MW; B3A028C6479A6533 CRC64; MTSGAKKYPH FFKIFLPEQD SHIMKVPKEF LKHLDEDLSS NAVLSGPSSG EQWQVSVLKK GNDVYMQNGW PEFVTDNLVV LNEFLLFTYH GDNCFHVQIF GKNGLERLCL RETRQEQAAA IPKNSTQTFA GLSPHKSKSC KRDTPFSNKD FIFTGCETME TRQKQTATPS LATTKKNKER KFSPGASHLQ ESKSYQQDLS FSNKASLPKD FPTPQHSIEI ESSKAWKLAE SFTSCNPHWK HLMTKSNVED CCILPIATEF ARKYIPEAVK QIHIGNCKGT SWKVQVNCFK NQDRRYAQLT TGWVNFVREN KLMRGDTCIF ELEEDFHFRV HIFRTSCAPR // ID V7AKC7_PHAVU Unreviewed; 693 AA. AC V7AKC7; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_010G011600g {ECO:0000313|EMBL:ESW06004.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW06004.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW06004.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002297; ESW06004.1; -; Genomic_DNA. DR RefSeq; XP_007134010.1; XM_007133948.1. DR GeneID; 18617062; -. DR KEGG; pvu:PHAVU_010G011600g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 582 663 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 693 AA; 77185 MW; 0A373CD0088638EA CRC64; MLSRASNVSA EVVGWGEGED ELYEQLWKAC AGPLVDVPRA GQRVFYFPQG HMEQLEASTN QELNQRIPLL QLPTKILCRV VNVHLLAEQE TDEVYAQITL VPESNQDEPT SADTCTAEAP RAPAHSFCKV LTASDTSTHG GFSVLRKHAT ECLPALDMSQ PTPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDT FVFLRGDNGE LRVGVRRLAR QASSMPSSVI SSQSMHLGVL ATASHAVATQ TLFVVYYKPR TSQFIIGVNR YLEAVSTKFG VGMRFKMRFE GDDSAETDKR FSGTIVGIED ISPHWENSKW RSLKVQWDEL AAVPRPERVS PWEIEPFIAS ASTPSVQPTI VKTKRPRPSS EVPDVDTTSA ASVFWDTDLP QPDTTQINVL AESKQNDKTG SWHHMQTDMN SKSNSNNTML RNQTEGSWLS SPHSSCPSHL FQDTTDDSKS VSGWPVSKPH SSRLSNEHVL DQVDKENKVE TAASYRLFGI DLIDHSRNSP AVEKASPHAV NVAKVTTEGC TSTLSQTDAG HMSEVPNSSS KERKQEQQQV SPKETQSKQV CRSRTKVQMQ GVAVGRAVDL TILDGYDKLI NELEEMFDIK GQLQYRNKWE IVFTDDEGDM MLVGDDPWPE FCSMVRRIFI CSSQDVKKMC CGSKLPISSV EDGTVISSET TET // ID V7ANU2_PHAVU Unreviewed; 476 AA. AC V7ANU2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW07332.1}; GN ORFNames=PHAVU_010G120900g {ECO:0000313|EMBL:ESW07332.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW07332.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW07332.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002297; ESW07331.1; -; Genomic_DNA. DR EMBL; CM002297; ESW07332.1; -; Genomic_DNA. DR EMBL; CM002297; ESW07333.1; -; Genomic_DNA. DR RefSeq; XP_007135337.1; XM_007135275.1. DR RefSeq; XP_007135338.1; XM_007135276.1. DR RefSeq; XP_007135339.1; XM_007135277.1. DR GeneID; 18618202; -. DR KEGG; pvu:PHAVU_010G120900g; -. DR Proteomes; UP000000226; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 222 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 117 222 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 476 AA; 53393 MW; D6CB41C74F245602 CRC64; MELMQEVKGY SDSREEEEEE EAAEEIITRE DSSRLLHQHQ DAAGSNFIIS NHHHHHHHAT KQLDFMDLTL GSSKDEGNLQ GSGGGASSVF PHHASGSSSA DGNVNSLQQP SEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSAN EKGLLLNFED RNGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV SFQRGVGELY RHRLYIDWRR RPDHHHHHGP DPSTALFTPF FLPNQPHFIR WGATGRLYTL PSPNPPRHHD HLQQHLNYNT MYHQHHHPFH HQLQAAAAGG AAGGNGTHHY NYHDMSTSGS GSVYYLRSTP QPMPLTDHQI LNTRQQQEGG NVSHPPIIID SVPVAHHHHH QHHGGKSGSS TSTSPSTAGK RLRLFGVNME CASSTSEHPN CFSLLSSSSM AHVTMANSNS PPSSSLPPLQ LLREDSLSSP SSARFGDQRG EPSMLFDLDP SLQYRQ // ID V7AQ41_PHAVU Unreviewed; 906 AA. AC V7AQ41; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW06713.1}; GN ORFNames=PHAVU_010G070200g {ECO:0000313|EMBL:ESW06713.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW06713.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW06713.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002297; ESW06712.1; -; Genomic_DNA. DR EMBL; CM002297; ESW06713.1; -; Genomic_DNA. DR RefSeq; XP_007134718.1; XM_007134656.1. DR RefSeq; XP_007134719.1; XM_007134657.1. DR GeneID; 18617672; -. DR KEGG; pvu:PHAVU_010G070200g; -. DR Proteomes; UP000000226; Chromosome 10. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 321 422 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 586 636 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 321 422 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 906 AA; 100202 MW; 13AD206098B98C24 CRC64; MESKNCMNVA CATLTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HPNDSGWRKC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI ASNEKPNGSG TSKVIDASAQ QCTTLANQLN VRGMQGGHYA ENDGLRCWFK PHKVETDGLS TEMKPEVLPS VGELGSTLIS QFHFESNGSS KASKAESCKV DSEMRDIYDS LAQTNLSMTL ATPLGNSNPF HNSVVDEREQ SKASSLLLGS RSRHLLPKPP RSTSGTGLEV NAGMISQIRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK ATNSTAVQET LPSNMPNGSH SSETSYSGVY ENLPVLSGYS GLLQSQKGCS ETHLNVLSKK WNSAGGDMNW HNIDMPESRK REGLPLPPLL VPEKKRTRNI GSKSKRMLID SQDAMELKLT WEEAQDLLRP PPTVKPSIVM IEDQVFEAYE EPPVFGKRSI FVVRSAGVNE QWTQCDSCSK WRKLPVDVLI PPKWTCVENL WDQSRSSCAA PNELNPRELD NLLRLNKEFK KQRLAASQRP ALDKESSGLD ALANAAILGD DASDSGRTPV VTTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQLAW GTKEESEVDS TSRHLTPVDG LENEVRAPIE LEPRTEDHVA EAGKGQLDLN CQPDREEAQA GPNNVSMTTL LEEANLPLET YLKQNGLTSL ISEQQTNSAS NVQAQTTNES EGRHNEDCGT PSVIHEQDSS HEENSGQDKD QNNSLS // ID V7ARK7_PHAVU Unreviewed; 551 AA. AC V7ARK7; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_009G026200g {ECO:0000313|EMBL:ESW08189.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW08189.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW08189.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW08189.1; -; Genomic_DNA. DR RefSeq; XP_007136195.1; XM_007136133.1. DR GeneID; 18618933; -. DR KEGG; pvu:PHAVU_009G026200g; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 551 AA; 60630 MW; 78EB0B951466A5B4 CRC64; MPRQPPPPPP QQPGALEAAV WQACAGPSVE IPKPNSMVYY FAQGHFDQAS SPPRNVSSAV LARPFVTCNV VAVRFLADPL TDEVFAKMVL QPVANVFAAA AAPLHNHAAA PPQKDDKEVV SFAKILTPSD ANNGGGFSVP RFCADSIFPP LDYDEDPPVQ NLSVTDVHGF TWEFRHIFRG TPRRHLLTTG WSTFVNNKKL VAGDSVLFMK NADKRLLVGI RRATRFAPGR GSCVKLRLID EEEEEEEEKE EVRGVFSRDG KGKLSAKEVV EAAELAVRNM QFEVVYYPKA GWSEFVVKTE VVDAAMRIAW RDGMRVKMSV ETDDSSRTTW FQGTVSAVSY QENGQWCSSP WRMLQVTWDE PEGLQNAKWV SPWQVELVST TPALHSAFPS PKRLRTANGS WVYANGEGDL FSMTGFTNPA MGHLNQALWS YSTFPAGMQG ARHDVFSASS FSSYPRDMSH LGMCNSFGNS TFSRLNNLSI DPSPDSRSSL HSCVIDTVGN HKSNSTKPVS DSFQLFGAVI RKEQPVQSSL TGTGCASTGD KKALEYKGSY L // ID V7AWC8_PHAVU Unreviewed; 419 AA. AC V7AWC8; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW09952.1}; GN ORFNames=PHAVU_009G169300g {ECO:0000313|EMBL:ESW09952.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW09952.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW09952.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW09952.1; -; Genomic_DNA. DR RefSeq; XP_007137958.1; XM_007137896.1. DR GeneID; 18620413; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 66 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 353 419 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 66 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 353 419 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 419 AA; 47540 MW; BE1456235EA03FFE CRC64; MVNKKINLND SSGQQWKVKV SEVNGSFVFG EGWSSFSLGL GLKVGYLLVF NYIKDLHFDV KIYDTSACEK LGFSKKRDQK KRSRGKIVSP VRDGILVRQE PNAPKMKRQC SEVDLDLPQN SKESGQLMHI SDHCEDPCYS KRQEFDQSHG DDGTMKIENG DLNVSNVDYE SNIFEKDAMT CSKDTMFEGK FSTEVALDIS ELEKSGRSVS LGEAETSTYG KTSNLKFEEN KAILSNMEAQ ECQFSKGLGE MKKLPEDMTP NLDSSMDELN LTGEVSKQLK KELVTLVELE ATGLPTEIKG LLDSDIFNED NARHSKTTHL SCVVPHDNVC LKLPKCLPMI RRVKVDQLRK MVVFLRDPLR RLWPVFYHEK PHLQLLAHGW LDFCRANNIQ AKDECIFEAE VDPECKSKHI LSVHIVHNK // ID V7AWK0_PHAVU Unreviewed; 391 AA. AC V7AWK0; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW09954.1}; GN ORFNames=PHAVU_009G169300g {ECO:0000313|EMBL:ESW09954.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW09954.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW09954.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW09954.1; -; Genomic_DNA. DR RefSeq; XP_007137960.1; XM_007137898.1. DR GeneID; 18620413; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 391 AA; 43619 MW; 23C5B6DA5DB92EA5 CRC64; MGGEEQGVSV CAACFHNCLL FHPTKPTSPT SFFKFITRQD YLTTLCIPPA FSSIVANMVN KKINLNDSSG QQWKVKVSEV NGSFVFGEGW SSFSLGLGLK VGYLLVFNYI KDLHFDVKIY DTSACEKLGF SKKRDQKKRS RGKIVSPVRD GILVRQEPNA PKMKRQCSEV DLDLPQNSKE SGQLMHISDH CEDPCYSKRQ EFDQSHGDDG TMKIENGDLN VSNVDYESNI FEKDAMTCSK DTMFEGKFST EVALDISELE KSGRSVSLGE AETSTYGKTS NLKFEENKAI LSNMEAQECQ FSKGLGEMKK LPEDMTPNLD SSMDELNLTG EVSKQLKKEL VTLVELEATG LPTEIKGLLD SDIFNEDNAR HSKTTHLSCV VPHDNVCLVQ Y // ID V7AWT6_PHAVU Unreviewed; 228 AA. AC V7AWT6; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW08666.1}; GN ORFNames=PHAVU_009G064100g {ECO:0000313|EMBL:ESW08666.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW08666.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW08666.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW08666.1; -; Genomic_DNA. DR RefSeq; XP_007136672.1; XM_007136610.1. DR GeneID; 18619325; -. DR KEGG; pvu:PHAVU_009G064100g; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 128 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 228 AA; 25749 MW; 618727430B5DC59E CRC64; MVAASAYEES RRKRLEENRK RMEALNLPLL SRALHKSHSP ASSPSKSVKK RNIQEPMVVV RRSGRLANLP SPIYKEIVID RVSIARRNIG NRHRDFVNRV YASDESRKEA LEKAENLTSG LESDYPNFIK SMLQSHVSGG FWLGLPVHFC KSNLPKGDEV MTLIDEDGNE YPTIYLPRKS GLSGGWKGFA VAHDLADGDA LIFQLIRRTA FKVYIIRANS ASEDKQLK // ID V7AXC2_PHAVU Unreviewed; 476 AA. AC V7AXC2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW09950.1}; GN ORFNames=PHAVU_009G169300g {ECO:0000313|EMBL:ESW09950.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW09950.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW09950.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW09950.1; -; Genomic_DNA. DR RefSeq; XP_007137956.1; XM_007137894.1. DR GeneID; 18620413; -. DR KEGG; pvu:PHAVU_009G169300g; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 410 476 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 410 476 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 476 AA; 53747 MW; 70F8950E1DB49397 CRC64; MGGEEQGVSV CAACFHNCLL FHPTKPTSPT SFFKFITRQD YLTTLCIPPA FSSIVANMVN KKINLNDSSG QQWKVKVSEV NGSFVFGEGW SSFSLGLGLK VGYLLVFNYI KDLHFDVKIY DTSACEKLGF SKKRDQKKRS RGKIVSPVRD GILVRQEPNA PKMKRQCSEV DLDLPQNSKE SGQLMHISDH CEDPCYSKRQ EFDQSHGDDG TMKIENGDLN VSNVDYESNI FEKDAMTCSK DTMFEGKFST EVALDISELE KSGRSVSLGE AETSTYGKTS NLKFEENKAI LSNMEAQECQ FSKGLGEMKK LPEDMTPNLD SSMDELNLTG EVSKQLKKEL VTLVELEATG LPTEIKGLLD SDIFNEDNAR HSKTTHLSCV VPHDNVCLKL PKCLPMIRRV KVDQLRKMVV FLRDPLRRLW PVFYHEKPHL QLLAHGWLDF CRANNIQAKD ECIFEAEVDP ECKSKHILSV HIVHNK // ID V7AXC7_PHAVU Unreviewed; 334 AA. AC V7AXC7; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW09955.1}; GN ORFNames=PHAVU_009G169300g {ECO:0000313|EMBL:ESW09955.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW09955.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW09955.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW09955.1; -; Genomic_DNA. DR RefSeq; XP_007137961.1; XM_007137899.1. DR GeneID; 18620413; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 66 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 66 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 334 AA; 37412 MW; 48466FC88A6BDD05 CRC64; MVNKKINLND SSGQQWKVKV SEVNGSFVFG EGWSSFSLGL GLKVGYLLVF NYIKDLHFDV KIYDTSACEK LGFSKKRDQK KRSRGKIVSP VRDGILVRQE PNAPKMKRQC SEVDLDLPQN SKESGQLMHI SDHCEDPCYS KRQEFDQSHG DDGTMKIENG DLNVSNVDYE SNIFEKDAMT CSKDTMFEGK FSTEVALDIS ELEKSGRSVS LGEAETSTYG KTSNLKFEEN KAILSNMEAQ ECQFSKGLGE MKKLPEDMTP NLDSSMDELN LTGEVSKQLK KELVTLVELE ATGLPTEIKG LLDSDIFNED NARHSKTTHL SCVVPHDNVC LVQY // ID V7AZB3_PHAVU Unreviewed; 416 AA. AC V7AZB3; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW09953.1}; GN ORFNames=PHAVU_009G169300g {ECO:0000313|EMBL:ESW09953.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW09953.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW09953.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW09953.1; -; Genomic_DNA. DR RefSeq; XP_007137959.1; XM_007137897.1. DR GeneID; 18620413; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 66 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 350 416 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 66 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 350 416 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 416 AA; 47225 MW; EF25B65E34EAE80C CRC64; MVNKKINLND SSGQQWKVKV SEVNGSFVFG EGWSSFSLGL GLKVGYLLVF NYIKDLHFDV KIYDTSACEK LGFSKKRDQK KRSRGKIVSP VRDGILVRQE PNAPKMKRQC SEVDLDLPQN SKESGQLMHI SDHCEDPCYS KRQEFDQSHG DDGTMKIENG DLNVSNVDYE SNIFEKDAMT CSKDTMFEGK FSTEVALDIS ELEKSGRSVS LGEAETSTYG KTSNLKFEEN KAILSNMEAQ ECQFSKGLGE MKKLPEDMTP NLDSSMDELN LTGEVSKQLK KELVTLVELE ATGLPTEIKG LLDSDIFNED NARHSKTTHL SCVVPHDNKL PKCLPMIRRV KVDQLRKMVV FLRDPLRRLW PVFYHEKPHL QLLAHGWLDF CRANNIQAKD ECIFEAEVDP ECKSKHILSV HIVHNK // ID V7B042_PHAVU Unreviewed; 843 AA. AC V7B042; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_009G161900g {ECO:0000313|EMBL:ESW09856.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW09856.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW09856.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW09856.1; -; Genomic_DNA. DR RefSeq; XP_007137862.1; XM_007137800.1. DR GeneID; 18620336; -. DR KEGG; pvu:PHAVU_009G161900g; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 142 244 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 797 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 142 244 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 843 AA; 93731 MW; A2EA25AF218BDDED CRC64; MASSEVTMKG NCLNHIDGGA SEAQSPATAK DAEAALFREL WHACAGPLVT VPREGERVFY FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ NENDVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ ELAAKDLHGN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AILTGTIFTV YYKPRTSPAE FIVPYDQYME SLKNSYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPNR WRESKWRCLK VRWDETSNTP RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAIPPSPD SSVLTREASS KVSIDPSPAN GFPRVLQGQE FSTLRGNYTE SIDSDAAEKS VVWPPAAVDD EKIDVSTSRR YGSESWMSMG RNEPTYSDLL SGFGAGGDSS HSSFMDQMSP VAYPTRKQSS DHEGKLHMPQ PWPVMPSSLS LNILDSNTKG PAHGGDPTYQ ARGNLRYSAF GEYPALHGHK VEHSHGNLMP PPPPAPVNQY QIPCSRELML KPVPAKTFEA VKLKDGDCKL FGFSLISGPI VPEPPVSQRN MNEPTGQMHL TPHQQRTSEN DEKSDHSKGS KTADDLIVDD HDRPLQASQL HAKDGQAKPL SSSARSCTKV HKKGIALGRS VDLTKYTGYD ELVAELDQLF EFEGELLSTK KDWLIVYTDN EGDMMLVGDD PWQEFCAMVR KIYIYPKEEI QKMSPGTLSS KNEENQSGSE GADAKDVKCL PPQKFNYENG LDA // ID V7B0E5_PHAVU Unreviewed; 473 AA. AC V7B0E5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW09951.1}; GN ORFNames=PHAVU_009G169300g {ECO:0000313|EMBL:ESW09951.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW09951.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW09951.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW09951.1; -; Genomic_DNA. DR RefSeq; XP_007137957.1; XM_007137895.1. DR GeneID; 18620413; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 30 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 407 473 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 30 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 407 473 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 473 AA; 53432 MW; C266A2F25D72A89C CRC64; MGGEEQGVSV CAACFHNCLL FHPTKPTSPT SFFKFITRQD YLTTLCIPPA FSSIVANMVN KKINLNDSSG QQWKVKVSEV NGSFVFGEGW SSFSLGLGLK VGYLLVFNYI KDLHFDVKIY DTSACEKLGF SKKRDQKKRS RGKIVSPVRD GILVRQEPNA PKMKRQCSEV DLDLPQNSKE SGQLMHISDH CEDPCYSKRQ EFDQSHGDDG TMKIENGDLN VSNVDYESNI FEKDAMTCSK DTMFEGKFST EVALDISELE KSGRSVSLGE AETSTYGKTS NLKFEENKAI LSNMEAQECQ FSKGLGEMKK LPEDMTPNLD SSMDELNLTG EVSKQLKKEL VTLVELEATG LPTEIKGLLD SDIFNEDNAR HSKTTHLSCV VPHDNKLPKC LPMIRRVKVD QLRKMVVFLR DPLRRLWPVF YHEKPHLQLL AHGWLDFCRA NNIQAKDECI FEAEVDPECK SKHILSVHIV HNK // ID V7B158_PHAVU Unreviewed; 1122 AA. AC V7B158; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_009G224800g {ECO:0000313|EMBL:ESW10623.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW10623.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW10623.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW10623.1; -; Genomic_DNA. DR RefSeq; XP_007138629.1; XM_007138567.1. DR GeneID; 18620986; -. DR KEGG; pvu:PHAVU_009G224800g; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 995 1088 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 674 698 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1122 AA; 125415 MW; 5BDFB7BFABA6862D CRC64; MKAPPNGYLP NSSEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFVPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VTKYDKEAIL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPLLDFSMQ PPAQEIVAKD LHDSTWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALYNQV SLGMRFRMMF ETEESGVRRH MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPGMP DDDSDIENAF KRAMPWLGDD LGMKDASSSI FPGLSLVQWM SMQQNNQFSG VQSGFMPPSM LSSNALHGNL PTDDPSKLLN FQAPVLSSPN LQFNKPNLPN QVNQLQQPPT SWPPQQQQQK LQSLMPTPLN PLQQQQQRQQ QLPVLQNLSQ PQQQQPQMSQ QRAQQPQQQQ QQSCQQTIMN NGAVSSNQIP NQCVQQPVTY SQLQQQQLLS GNIPPQQSFQ SPNKNTLLMT SLPQDSQFQQ QIDQQASLLQ RQQQQTQLQS SPLQLLQQSL SQRAPQQPQM TQMSQQNSSE QQPQLQLLQK LQQQQQQQQQ QQQQQQQQLL STSSPLLQSQ LLQQQNTHQQ NQQLPQLPLS QCHQAQQLGN NAFSMEKLFN GNNYSSSSLM QTQQLPVNQS HNTQKSLTNT RAPSTLTDGD APSCSTSPST NNCQISPSNL IKRNQQVPTT LGGPSVVEPT NHLIQELHRK SEMQIKHELP SVRGPDQLKC KGTIADQMEA SSGTSYSIDP NNIHQNFPLP SFCMDGDVQS HPRNNLPFAS NLDGLTPDTL LSRGYDSQKD LQNLLSNYGG APRDIETELS TAAITSQPFG VPDMPFKPGC SSDIAINDPG VLNNGLWASQ TQRMRTYTKV QKCGSVGRCI DVTRYKGYDE LRNDLARMFG IEGQLEDPQR TEWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSAEV QQMSLDGDLG HVPVPNQACS GTDNGNAWRG QYDDNSAASF NR // ID V7B3K4_PHAVU Unreviewed; 444 AA. AC V7B3K4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW11036.1}; GN ORFNames=PHAVU_009G260100g {ECO:0000313|EMBL:ESW11036.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW11036.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW11036.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002296; ESW11036.1; -; Genomic_DNA. DR RefSeq; XP_007139042.1; XM_007138980.1. DR GeneID; 18621350; -. DR KEGG; pvu:PHAVU_009G260100g; -. DR Proteomes; UP000000226; Chromosome 9. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 217 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 112 217 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 444 AA; 49720 MW; A8E4BB01A4D0AF63 CRC64; MDLIQQVKGN YSDSREEEEE EEVAEIMGIT REAESSRLHH QDAASNFGKK LDLMELSLGS TKEEERERNL QHHQHHHQHP QQQQHEHHQQ HHHEGPGTCS NAKEAVEKEQ MFEKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKV WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDTVSFQRG LGDMYRHRLY IDWRRRTDHA HPPSDPSASP LFLPSIRWYS LPATSPIAPP RYHHDHHFHH LNYSNLFTFQ HQHQYLGHVH GAAATAASHH HNNYGEHNSG SGPGSLYYLR SMGGGGDQNM GGRGNSIVPM IIDSVPVNVG HHNHRHGHGG MASGGGSATT SSGKRLRLFG VNMECASSAE DSRSLSLGSG GHVTVGNSLP SSSSSLQQRL RIPHEDPLSS SARFGDHKGG SGTSLLFDLD PSLQ // ID V7B4J3_PHAVU Unreviewed; 563 AA. AC V7B4J3; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_008G118400g {ECO:0000313|EMBL:ESW12500.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW12500.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW12500.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW12500.1; -; Genomic_DNA. DR RefSeq; XP_007140506.1; XM_007140444.1. DR GeneID; 18622605; -. DR KEGG; pvu:PHAVU_008G118400g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 563 AA; 62981 MW; C99E8D5071B5DC3E CRC64; MSLHRGEEDE LYEQLWKACA GPHVEIPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK LPSEILCRVV NVHLLAEQET DEVYAQITLV PENNQTEPTC PDPCPSEVPR PRVHSFCKVL TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGSNGEL RVGVRRLTPV QNSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRLKTRSEG DDSTETDKRF SGTIIGVEDI SPHWVNSKWR SLKVQWDEPP SFPRPDRVSP WEIEPILASV PTTISSQPVV IKNKRPRQAS EVPDLGDTPL IAPTFWDAGL TQSDITQLGV MAESKRSESS AHMWHHNSSN GISMNQIKAS WLSCPSHLYL DTTDDSKSVS ASPISKTHSE RLNNDHCLDQ VDKEISKVEP ATGCRLFGID LIDHTRSSSL SVDNASGVTS EGRTDVNHEP DISKASKGWK QEQLQVSPKE TQSKQICSRS CTKVFDMSHV LII // ID V7B5C1_PHAVU Unreviewed; 160 AA. AC V7B5C1; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW12760.1}; DE Flags: Fragment; GN ORFNames=PHAVU_008G140100g {ECO:0000313|EMBL:ESW12760.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW12760.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW12760.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW12760.1; -; Genomic_DNA. DR RefSeq; XP_007140766.1; XM_007140704.1. DR GeneID; 18622831; -. DR KEGG; pvu:PHAVU_008G140100g; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 160 160 {ECO:0000313|EMBL:ESW12760.1}. SQ SEQUENCE 160 AA; 18670 MW; 69BF751F0D71FC7F CRC64; MTSKLNQRDD SHGGSASKPI HFFRIMLSHN LLHGKLRLPS KFVSKYGNHL PNTIFLKLPN DAEWEVKLEK SDGSVWFQQG WKEFVEYHCL AHGHLLVFRY NGTSHFHVLI CDMSCMEIDY PVNKANQKRV RINSEDIQPA KTQKPTQNEK RSDEDVRDHK // ID V7B6C2_PHAVU Unreviewed; 537 AA. AC V7B6C2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_008G168700g {ECO:0000313|EMBL:ESW13110.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW13110.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW13110.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW13110.1; -; Genomic_DNA. DR RefSeq; XP_007141116.1; XM_007141054.1. DR GeneID; 18623133; -. DR KEGG; pvu:PHAVU_008G168700g; -. DR PhylomeDB; V7B6C2; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 537 AA; 59099 MW; 7DB71832FBC37ECA CRC64; MPPPQPRRVD PKIWRACAGA AVHIPKLHSR VYYFPQGHME HASPSHSLSP AYRSPPFVLC HVSSRDLLAD PFSDEVFAKL LLTPLPHPFH HNQNDDSNSQ NEDEDDRDCQ NGVVSFSKIL TPSDANNGGG FSVPRFCADS VFPPLDFRAD PPVQLLSVTD VHGVAWRFRH IYRGTPRRHL FTTGWSKFVN HKKLIAGDSV VFVKDSDGNV SVGIRRATRF VSSSSLVEAE QPPAQGEGFS RSATGRVSPK AVAAAAECVA RNAPFEVVYY PKAGFADFVV SAEVVEDAMK CAWVGGMRVK IGMETEDSSR MTWFQGTVTS AYASDNGPWR MLQVNWDEPE VLQNAKRVSP WQVELVSPSL APHPAFSPSK RFRADQGSGL LSDREGDPFF PMTGFPNSTM GNMDKRLLSY DTFPAGMQGA RHDLFSASSF SNFLNDNSYM YMGSTSFGNN TVQSLGIVST ELNMSSSQSD DLSPHSQSSL HSFDTEFTGT RQCNTKVGSG SILLFGKIIQ PAETHLHDAA DYMERDGSRG NKETEDS // ID V7B6L0_PHAVU Unreviewed; 894 AA. AC V7B6L0; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_008G197600g {ECO:0000313|EMBL:ESW13454.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW13454.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW13454.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW13454.1; -; Genomic_DNA. DR RefSeq; XP_007141460.1; XM_007141398.1. DR GeneID; 18623430; -. DR KEGG; pvu:PHAVU_008G197600g; -. DR PhylomeDB; V7B6L0; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 758 844 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 894 AA; 98827 MW; DF71E556BC00D5B9 CRC64; MKLSSSGFNQ PGEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQITL QPLNPQEQKE VYLMPAELGS PNKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWS NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLRRPWP TGLPSLYGLK DGDMGLGSPF MWLQGGLGDQ GMQSLNFQGL GVAPWMQPKL DSSIPGLQPE LYQAMTSAAF QEMRTMDPSK SSQSLLQFQQ TSNVPSAHTS EVHRQVLPQS QPQSTLLQNF QENQVPPQSQ LLQQQLHRYH PYSDQRQQQQ LKNLPVQQQL PNIISPLSNF ASGTQSQSPP MQALATHCQQ QSFPEPIRNH ISGSDVSPIQ SLLGSFSQDG TSQLLNLNGS NSIISSASIL PKQMTVESQL PSAAPQCVLP QVENLGTSQS NVSELAALPP FPGREHSAYH GAADPQSNLL FGINIDPSSL MLQNGMSNLR NMGNVNDSLS LPFSASNCGG ATGTDFPLSS NMTTSSCMDE SGFLQSSENV DQANTPTGTF VKVHKSGSFG RSLDISKFSS YDELRSELAR MFGLEGQLED PKTQRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK GVSPSTSAPG HKLSTSGNSC DNYVNQQELR SSRNGMASMG SFHY // ID V7B7D7_PHAVU Unreviewed; 331 AA. AC V7B7D7; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW13719.1}; GN ORFNames=PHAVU_008G220000g {ECO:0000313|EMBL:ESW13719.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW13719.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW13719.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW13719.1; -; Genomic_DNA. DR RefSeq; XP_007141725.1; XM_007141663.1. DR GeneID; 18623660; -. DR KEGG; pvu:PHAVU_008G220000g; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 289 329 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 289 329 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 331 AA; 39219 MW; EBBE33A227AF6621 CRC64; MTTAAKKYFF KIFFPEKHSE RMVIPSSFVK SRRLRRRRIP EDIILRNVSG GVWCVKTRLV GHKIYFQEGW KVFQAENCIG KADFLLFKYD GTNVFKVVIL EQSSRCERRE VEEDEVIDIT EEEENEKTED YVMEDEEDSD YENEYYEDED DNYTEMEEES EEEHMKSQNH HSRASNRDSA TSSIPKIEGP HLEDYEFDPQ MYIQPENPYF EAKLYKNRPN ELHIPANVLR ESSLTFPEEI TLSRCKCFQR EDIRRNELGD NHLGFSRQTP MYSEVTKVSE WQDGRVCIKG WTNFCTKNKI KENDVCICEI VSGKHQIVRT LQVHVLGARN E // ID V7B7Q4_PHAVU Unreviewed; 659 AA. AC V7B7Q4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_008G118400g {ECO:0000313|EMBL:ESW12501.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW12501.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW12501.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW12501.1; -; Genomic_DNA. DR RefSeq; XP_007140507.1; XM_007140445.1. DR GeneID; 18622605; -. DR PhylomeDB; V7B7Q4; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 2. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 116 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 549 630 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 116 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 659 AA; 73890 MW; 45E8381B09FC956F CRC64; MSLHRGEEDE LYEQLWKACA GPHVEIPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK LPSEILCRVV NVHLLAEQET DEVYAQITLV PENNQTEPTC PDPCPSEVPR PRVHSFCKVL TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGSNGEL RVGVRRLTPV QNSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRLKTRSEG DDSTETDKRF SGTIIGVEDI SPHWVNSKWR SLKVQWDEPP SFPRPDRVSP WEIEPILASV PTTISSQPVV IKNKRPRQAS EVPDLGDTPL IAPTFWDAGL TQSDITQLGV MAESKRSESS AHMWHHNSSN GISMNQIKAS WLSCPSHLYL DTTDDSKSVS ASPISKTHSE RLNNDHCLDQ VDKEISKVEP ATGCRLFGID LIDHTRSSSL SVDNASGVTS EGRTDVNHEP DISKASKGWK QEQLQVSPKE TQSKQICSRS CTKVQMQGVA VGRAVDLTTL DGYEKLVDEL EKMFDIKGQL RHRNKWEIVF TDDEGDMMLV GDDPWPEFCN MVRRIFICSS QDVHKLSSGS KLPIFSTEEI VISSDTTEI // ID V7B7U6_PHAVU Unreviewed; 734 AA. AC V7B7U6; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW12546.1}; GN ORFNames=PHAVU_008G122100g {ECO:0000313|EMBL:ESW12546.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW12546.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW12546.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW12546.1; -; Genomic_DNA. DR RefSeq; XP_007140552.1; XM_007140490.1. DR GeneID; 18622644; -. DR KEGG; pvu:PHAVU_008G122100g; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 583 685 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 583 685 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 734 AA; 80963 MW; B652B7BBC040241D CRC64; MEDEQTLSVA EREMWLNSDQ DEFLGVNEAS MFYADFPPLP DFPCMSSSSS SSSAAPLPLK TTTCSTTTTA TTATSSSSSS SSWAVLKSDV EEDVEKNHCN GSMQDQFDAT ALSSTASMEI SQQQNPDPGL GGSVGECMED VMDTFGYMEL LEANDFFDPA SIFQNEESED PLIEFGVLEE QVSLQEEQHE MVHQQENTEE DRKVPVCEVI KGEEEGGGGG GGRVVDDEMS NVFLEWLKSN KDSVSANDLR NVKLKKATIE SAAKRLGGGK EAMKQLLKLI LEWVQTSHLQ NKRRKENGSN NSNALQAQFQ DPSAQTKENA HTSGSFAPES NSCFNNQTPW LNPQTFGTDQ APVMVPSQPY SQPVVGYVGD PYTSGSAPNN ITVNHNHNNN PYQPGTDQYH MLESAHSWPH SQFNVASHYS QSYGENGLFT HGGFGGYANN QYPYQFFHGP GDRLMRLGPS ATKEARKKRM ARQRRFLSHH RNQNGNHLQN QGSDPHARLG NDNCTTGLVA PHQPNSAAAN WMYWQAMTGG PAGPLAPVVP ADPLAGQTVV DRTTMHTQNS HQNRAASDRR QGWKPEKNLR FLLQKVLKQS DVGSLGRIVL PKKEAETHLP ELEARDGISI TMEDIGTSRV WNMRYRYWPN NKSRMYLLEN TGDFVRANGL QEGDFIVIYS DVKCGKYMIR GVKVRQQGVK PETKKAGKSQ KNQHGTNASN TAGTAANNGR SSPPKPKAEK KVAN // ID V7B8G0_PHAVU Unreviewed; 109 AA. AC V7B8G0; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW12761.1}; GN ORFNames=PHAVU_008G140200g {ECO:0000313|EMBL:ESW12761.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW12761.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW12761.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW12761.1; -; Genomic_DNA. DR RefSeq; XP_007140767.1; XM_007140705.1. DR GeneID; 18622832; -. DR KEGG; pvu:PHAVU_008G140200g; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 99 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 109 AA; 12729 MW; C2763CEB673B302B CRC64; MEAVGNTSFM VILKPSNLIT GYMVPVRSYI KRREQYITLL VGDRSWRVKL IHYRNNTAYF TNFLDFAREN DLKEGDACFF QLINMGDDMV FRATFCKQTL LSSRVLKGQ // ID V7B9R1_PHAVU Unreviewed; 320 AA. AC V7B9R1; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW14612.1}; GN ORFNames=PHAVU_007G002900g {ECO:0000313|EMBL:ESW14612.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14612.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW14612.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW14612.1; -; Genomic_DNA. DR RefSeq; XP_007142618.1; XM_007142556.1. DR GeneID; 18624424; -. DR KEGG; pvu:PHAVU_007G002900g; -. DR KO; K09287; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 91 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 158 276 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 91 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 158 276 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 320 AA; 36796 MW; 4BA9BCD9D2FC4740 CRC64; MNRNKESYSD CCGEINSAAF DAMQEENRAA GSLFQKFKGV VPQQNGNWGA QIYANHHRIW LGTFKSEREA AMAYDSASIK LRSGESHRNF PWDDQTVQEP EFQSHYSTEA MLSMIRDGTY ASHFATFLTT RKTQQGVVAK HVTLKGDEEE KLCCTLLFQK ELTPSDVGKL NRLVIPKKHA VSYFPPVCEI AEGHEEHGSV DVEVAFYDRL MRLWKFRYCY WKSSQSYVFT RGWNRFVKDK KLKAKDTIAF FMCEPVDWRK GGEGEAFGLI DVIYNSDDER GLKCFGELVC SEEEEDTKEE TIEKDLNAQK GLRLFGVFIK // ID V7BAA5_PHAVU Unreviewed; 407 AA. AC V7BAA5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW14812.1}; DE Flags: Fragment; GN ORFNames=PHAVU_007G019400g {ECO:0000313|EMBL:ESW14812.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14812.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW14812.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW14812.1; -; Genomic_DNA. DR RefSeq; XP_007142818.1; XM_007142756.1. DR GeneID; 18624602; -. DR KEGG; pvu:PHAVU_007G019400g; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 74 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 190 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 315 406 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 74 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 190 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 315 406 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESW14812.1}. SQ SEQUENCE 407 AA; 47408 MW; 9A6F8D31283ED970 CRC64; SFVSKYWEDM SNPLLLLLPK GGEWKVKWKK IGVDIWLIEN WKKFVEFYSL DQDNLLIFKY VGVSQFEVVI LDQSGLEIFY PLMEAKLDDN GTCSCKFKKA ESSLPGSHFS KKVEANNRRN QPDITPDVEN VRAESQRFKV DFHGTQVETR GRKRKSFSCM KSSNSKEKAI PTESGTALER AKSFQSQNRF FVREMFPSYI QRNIMVMPGN IITKEEEHHS DNVTLWTSEE DRHWLVHFYR NNSSRQINLT SGWNHFAKDH NLKIGDVCVF EKIEKSGISF RVHIYRVDIY NVKQEPSSPK FSDCETTKCN NMTVENHFSV CINDKQLYSL NVPKIFFKNH GIANATEVIL QLGERSWNVK LDSYSRLTVG WNDFMRECRL KGGDVCVLEL IDKKKILFEV SILAFIE // ID V7BAH6_PHAVU Unreviewed; 264 AA. AC V7BAH6; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW14814.1}; GN ORFNames=PHAVU_007G019600g {ECO:0000313|EMBL:ESW14814.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14814.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW14814.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW14814.1; -; Genomic_DNA. DR RefSeq; XP_007142820.1; XM_007142758.1. DR GeneID; 18624604; -. DR KEGG; pvu:PHAVU_007G019600g; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 172 263 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 172 263 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 264 AA; 30754 MW; F14040208A9210FA CRC64; MAAHPPMDHA ILPIRFFKTI LKSNLQRLQI PKKFTNRYGE NLSNPVFLRP PDGTQWKVYW SKQKGEIWFE KGWKQFVEHY SLDHGYFVFF TFDGTSEIDV LIVDQSSLDM QYPSSHSPEQ SESLGHSDDE SFKLLDEGPD SDHHAQGNLS LNWPREARAN ELARKFISCN PFFTVVIRSY NLTSYRLNIP NLEGYIDKRK KYVTVEVGGV SWSLRLVGSD RRRLGGGWRV FAEENDLEAG DVCIFEHIFR NDSDFRVHIF KSQR // ID V7BB51_PHAVU Unreviewed; 267 AA. AC V7BB51; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW14815.1}; GN ORFNames=PHAVU_007G019700g {ECO:0000313|EMBL:ESW14815.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14815.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW14815.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW14815.1; -; Genomic_DNA. DR RefSeq; XP_007142821.1; XM_007142759.1. DR GeneID; 18624605; -. DR KEGG; pvu:PHAVU_007G019700g; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 170 266 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 170 266 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30894 MW; 746EB509DF7A006E CRC64; MASLPINFFK VILKTNLERL KIPNKFSCKY GSGLPNPLFM KPPDGTEWKV NWAEDKGEIW LEKGWKEFVE HYSLDQGHFI FFKYEGTSQI HVIILDQSAL EIDYPCGNGD ENDNLVKTEE ESDMVLDEGQ DVKDEQIRGE KCGERTSSLN RPTQSRAREV ACNFVSCNPF FTVFIRPSHT ATYRLSVPDL RGLIGEKERY AMLELGERGW KVKLIANNSS YFSHHRFSTG WYLFLRETEL QSGDVCVFEL ISKEDCVFKV HVFKNHT // ID V7BB70_PHAVU Unreviewed; 192 AA. AC V7BB70; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW15074.1}; DE Flags: Fragment; GN ORFNames=PHAVU_007G0419001g {ECO:0000313|EMBL:ESW15074.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW15074.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW15074.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW15074.1; -; Genomic_DNA. DR RefSeq; XP_007143080.1; XM_007143018.1. DR GeneID; 18624833; -. DR KEGG; pvu:PHAVU_007G0419001; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 192 192 {ECO:0000313|EMBL:ESW15074.1}. SQ SEQUENCE 192 AA; 21723 MW; 192A9C53F7E274BC CRC64; MTSNRSGILP PSEIRFFKII VHTTIQIGKL MIPKEFTRKH GASLSNPMFL KLPDGIEWEF SWTKEGAHNV WLEKGWKEFV TYYSLGHGHL LVFKYQQTCK LEVNIFDESG VEINYPSNNT QNHSAENLFE VSPTIPSYPG TSKKQRSRIG VVGESSNLPQ QVCQENSSGA ISSETPSFMV VMKESYVNGY LL // ID V7BB85_PHAVU Unreviewed; 289 AA. AC V7BB85; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW14855.1}; GN ORFNames=PHAVU_007G022900g {ECO:0000313|EMBL:ESW14855.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14855.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW14855.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW14855.1; -; Genomic_DNA. DR RefSeq; XP_007142861.1; XM_007142799.1. DR GeneID; 18624638; -. DR KEGG; pvu:PHAVU_007G022900g; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 13 106 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 225 289 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 13 106 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 225 289 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 289 AA; 32835 MW; FEA6A987FF708F6E CRC64; MASHLGQGSA TIPIHFFKII LETNVERIKL PNKFTNRYGG SLPNPVSLRA SDFKEWVVYW TEKNGEVWFE KGWKEFAENY SLSYGYFVVF KYSGTSQIDV LILDKSALEL DCLSSANASV NPVNATEKEQ NARPVASSMS GNCLNLPRTL KARKISNKFK SKHPYFTLVI EPSNLEENAS VNLNMKSLFD QFIIGIMSFF LTVVCCFTQK YVPKFLDNMN CEKNVVLQMA NRSSYAWYVK LLSGGDRYDR FSSGWSIFAK ESKLEVGDIC IFELVEPAGP LLRVHVFRS // ID V7BBW4_PHAVU Unreviewed; 197 AA. AC V7BBW4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW15075.1}; DE Flags: Fragment; GN ORFNames=PHAVU_007G0419000g {ECO:0000313|EMBL:ESW15075.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW15075.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW15075.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW15075.1; -; Genomic_DNA. DR RefSeq; XP_007143081.1; XM_007143019.1. DR GeneID; 18624834; -. DR KEGG; pvu:PHAVU_007G0419000; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 77 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 121 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 77 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 121 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESW15075.1}. SQ SEQUENCE 197 AA; 22954 MW; 8724AC30545F873C CRC64; VIPSIFAKKY LKKEGIHDVL LRVLDGRTWH VSLKDEKFHK GWKYFASDNR LNIGDNCTFD LTESQGLCFK VSIIRISQDT TSQGNLSRSF FQITLYYLCK NDCSFLPLNK VMKKYNLMQR VPIAFLRRYL QNKQVVMLQF GNKTWEIGLS GAIQTKMSNG WSQFAKECKV QHEDVCVFEL INIKDGVLDV HIFRKQS // ID V7BBY2_PHAVU Unreviewed; 844 AA. AC V7BBY2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_008G242400g {ECO:0000313|EMBL:ESW13976.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW13976.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW13976.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW13976.1; -; Genomic_DNA. DR RefSeq; XP_007141982.1; XM_007141920.1. DR GeneID; 18623891; -. DR KEGG; pvu:PHAVU_008G242400g; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 718 802 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 844 AA; 93819 MW; AE95F636316AF2A1 CRC64; MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSFHDGRD EATNGLIWLR GGPGDQGLNS LSFQGSGLLP WMQQRMDPTL LGNDHNQQYQ AMFASGLQNL GSGDLMRQQM MNFQQPFNYL QQSGNPNPSL QLQQPQAIQQ SVSSNNILQP QAQVLADNLS QHLLQKSHNR EDQTQQQHTY QDTVLLHSDQ LHQRQLSGLP SPSYSKPDFL DSSMKFPATV SPGQNMMSSL CPEGSGNLLN LSRSGQSMLT EQLPQQSWAP KFTPLQVNNT FGNSMPHVQQ YSGKDTAMVS PHCNSDTQNP ILFGVNIDSS GLLLPTTVPR YTTASADTDA SAMPLGESGF QASLYPCVQD SSELLRSAGQ VDPQNQTRTF VKVYKSGSVG RSLDISRFSS YHELREELAQ MFGIEGKLED PLRSGWQLVF VDRENDVLLL GDDPWESFVN NVWYIKILSP EDIQKMGEQA VESLGPSSGQ RLNSTGADSH EIVSGLPSIG SLEY // ID V7BC03_PHAVU Unreviewed; 401 AA. AC V7BC03; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW13996.1}; GN ORFNames=PHAVU_008G244300g {ECO:0000313|EMBL:ESW13996.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW13996.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW13996.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW13996.1; -; Genomic_DNA. DR RefSeq; XP_007142002.1; XM_007141940.1. DR GeneID; 18623910; -. DR KEGG; pvu:PHAVU_008G244300g; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 140 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 401 AA; 45557 MW; 7645776036F35E76 CRC64; MAKSRTSNTY EEARKQRLEE NKKRFEDLGI SRISKNLNEI TSSAKKRQHH VPKPKPKNTN GEVEPRRSSR VRNPVASYQE DVSIHLPALR KRSRSNSSTW GSYIARPLDE IKEATEEERL CALEAAEALQ INMNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEQLPKTV FDMVLEDENG SEYVAVYIGK RSGLSGGWRA FALDHKLDDG DALVFELVEA SRFKIYIVRA FPNLVEEKGK DILVEEGNMH TTKVPKAKCN LESESKTKKL RQAAAYETNE SESSQEHIDK EVKPQGLNST KQTKIYKKKT PKKSILSATA DSKGKVQMKT QNPKVSLELS NKTRKSKAIN AIDDSVELEK KSFARDADRK LEKVELVEEA SKCVIQKTRK KTAPKFFRKK A // ID V7BC44_PHAVU Unreviewed; 735 AA. AC V7BC44; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW14036.1}; GN ORFNames=PHAVU_008G247500g {ECO:0000313|EMBL:ESW14036.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14036.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW14036.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002295; ESW14036.1; -; Genomic_DNA. DR RefSeq; XP_007142042.1; XM_007141980.1. DR GeneID; 18623944; -. DR KEGG; pvu:PHAVU_008G247500g; -. DR Proteomes; UP000000226; Chromosome 8. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 312 413 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 312 413 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 735 AA; 82008 MW; A09D69FCC720E2BB CRC64; MEVEVCMNGA CKNGYAREWK KGWPLRSGGF ARLCDKCGSA YANSIFCEKF HLHQTGWREC DFCNKSIHCG CIISRFSFEY LDFGGIRCSS CLKATQLPLI QETGNSIRPI RSVKNHAEHI DDRLFLDGCS KRKLMHMRSI VDGRESSRWP QAKRDDIDSC IDLNREDMRF SNVMKPSNHS LKFTTLENNR PSWESRSMHR SSSLNISLGD SSGNSVLPSA LEIAEGRFEG KTSSSSFHQG KRSLSMMPKP LINAITINME TSNGMVSQER VARPPTDGKG RNMLLSRYWP RITDQELQQL SGDLKSTIVP LFEKVLSASD AGRIGRLVLP KSCAEAYFPP ISQSEGLPLH MKDVKGNEWT FQFRFWPNNN SRMYVLEGVT PCIQALQLNA GDIVIFSRID PGGKFVLGFR RASDSIDSQV DGSAAHSNVF STKKTTFSGA TANMHPGNSY HDLLQTRKGN GDPYLNRCSE HFRLGTGIAD CLRTENFEMV NNDLVQLPIS VSEKTQNIGP VCKRLLVHNE DAMELRVTWE EAQGLLCPAP SVKSSIVTIE DQEFEEYEEP PVFGKRTTIN ARSSGSLSFA SEETSPQELD NILVTNKDSK KRRIMEKAKS IIEHEAFCLN EEASAGVLDD DLAEPGDSSG GATTKHARHR SGCICIVCIK PPSGKGRHRA TCTCPACITV KRRLDTLMTR QQQWQSEGEA DGSQNDDIYE EGELSAGQID LNCRPNHDED MQVDI // ID V7BCY2_PHAVU Unreviewed; 608 AA. AC V7BCY2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_007G095000g {ECO:0000313|EMBL:ESW15702.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW15702.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW15702.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW15702.1; -; Genomic_DNA. DR RefSeq; XP_007143708.1; XM_007143646.1. DR GeneID; 18625379; -. DR KEGG; pvu:PHAVU_007G095000g; -. DR PhylomeDB; V7BCY2; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 608 AA; 66716 MW; 3B4F694CB4C46594 CRC64; MFKVMENMER SSERCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH GKVDFGQTRV PPLVPCRLSG MKYMADPDTD EVYVKMRLIP LREHELDLED DCFLGNTGVE GQEKPPTSFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SAEPPVQTII AKDMHGQCWK FRHIYRGTPR RHLLTTGWSN FVNQKRLVAG DSIVFLRAEN GDLCVGIRRA KKGIGGGSEF SSGWNPLFGG GSGFLCGSES SLVGGAKGGG DEMVGRVAAE SVVEAISCAV NGSPFEVVYY PRASSPEFCV KASVVKAAMQ IQWCSGMRFK MPFETEDSSR ISWFMGTISS VQVADPIRWP DSPWRLLQVV WDEPDLLHNV KCVNPWLVEL VSNMPTFNLS AYSPPRKKQR FVHDPYFQVI NQLPMPSFSS NLLNYTNSLC NIENSSSAGI QGARHAQFGL SPSDFPFNKL PAEMLLGGFS RLDHATKPIR PPCGTYKNNT SNTTTKTNVD ISCLLTVGNP NQNFKESNAT KAPHILLFGK LIHTEQKSSN TSSASTTGNS VSEGNSLKTS NASDGLGSAL HQNSPIETNN SDGGSPWYKE QHMADLGTDN VNTLCIAL // ID V7BD39_PHAVU Unreviewed; 328 AA. AC V7BD39; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW14813.1}; DE Flags: Fragment; GN ORFNames=PHAVU_007G019500g {ECO:0000313|EMBL:ESW14813.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14813.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW14813.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW14813.1; -; Genomic_DNA. DR RefSeq; XP_007142819.1; XM_007142757.1. DR GeneID; 18624603; -. DR KEGG; pvu:PHAVU_007G019500g; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 88 185 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 247 325 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 88 185 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 247 325 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESW14813.1}. SQ SEQUENCE 328 AA; 38090 MW; 23F42B5EE26163B2 CRC64; NGSSFRQCKR VRFSVPSSPS TKKEKIHPRK NPNSYPTQDV ETKYAESERT TVDERGRRRN RRCSRSKVKT ESGTALERAK SFISENPFFI RVMQRSHIIR KFLTMPADFI TVEERKENHR VSVWISEDKT WDMNVNVYRS KKEVSLGSGW ANFVKDNNLK KGNVCVFEKI KNPGLSFRVV IYRDAQESSP SNFSANESKE TRPQKSSADR GSDGVPKNVF YDSGFRRYNN EISENHFALS VLKTVCIPEQ FIRNHMMQNA AKVGLRVGNR TWPVKLEHYP ENQCHKLCYS GWSKFMRECK VNVGDVCNFE LVDKDTFVFQ VRVARCID // ID V7BDZ9_PHAVU Unreviewed; 361 AA. AC V7BDZ9; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW15795.1}; GN ORFNames=PHAVU_007G102800g {ECO:0000313|EMBL:ESW15795.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW15795.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW15795.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW15795.1; -; Genomic_DNA. DR RefSeq; XP_007143801.1; XM_007143739.1. DR GeneID; 18625459; -. DR KEGG; pvu:PHAVU_007G102800g; -. DR KO; K09287; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 54 109 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 174 288 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 54 109 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 174 288 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 361 AA; 39472 MW; 73228287A1FEF089 CRC64; MDAGSSTDET TTTSDSLSLP PNQSPPPLIR VGSGGVDPDA VSGEAESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDIAAQRFR GRDAVTNFKP LAGAGDDAES EFLNSHSKSE IVDMLRKHTY DDELQQSTRC GRRRRAAEAA SSGAFDPQAR EQLFEKTVTP SDVGKLNRLV IPKQHAEKHF PLSTGSGSGV SLCTAAAAAK GVLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEN NLRAGDAVRF FKSTGPDRQL YIDCKARSSG GICELNNNNA GGLFVPVGPV VEQVQMVRLF GVNLLKLPGS DGVRVGYEGK RKEMELFAFE CSKKLKVIGA L // ID V7BEU5_PHAVU Unreviewed; 708 AA. AC V7BEU5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_007G149000g {ECO:0000313|EMBL:ESW16347.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW16347.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW16347.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW16347.1; -; Genomic_DNA. DR RefSeq; XP_007144353.1; XM_007144291.1. DR GeneID; 18625939; -. DR KEGG; pvu:PHAVU_007G149000g; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 117 219 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 622 702 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 117 219 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 708 AA; 78519 MW; 667302D46CCFE6F8 CRC64; MITFMDSKEK SKEAEKCLDP QLWHACAGGM VQMPAVNTKV YYFPQGHAEH ACGAVNFRTC PKVSPLVPCR VASIKYMADP ETDEVYAKLR LAPMSVNDAD YDRDVVGPET QDKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGPEGSS GWNPAGGSCP MAYGGFSPFL REEDNRILRN GNINGLNPSV TMTGRGKVRP EAVVEAANLA ANKQPFEVVY YPRASTPEFC VKAPLVEAAL QIRWCSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHL SPFSPPRKKL RLHQHPDFPL DGQIHLPTFS GNLLGPSNTN QFGCLPESTP AGMQGARHAH YGLSISDLHF SKLHSGLFPA GFPPLDHAAT PMRISNNLTL QKPTISENVS CLLSMANSTQ SSKKMDEGKK TPQLVLFGQK ILTEQQISLS SSVDTFSPVL NRNCSSDGHA DKVANFSDGS GSALHQHQQQ HGQHQHQHER SSCERFQWYR DNPQETEAGL ETGHCKVFME SEDVGRTMDL SLLRSYDELY RRLTDMFGIE KSEMLSQVLY RDSNGAVKHI GDEPFSDFIK SARRLTILMD SGSNNVGV // ID V7BL55_PHAVU Unreviewed; 353 AA. AC V7BL55; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW17331.1}; GN ORFNames=PHAVU_007G230700g {ECO:0000313|EMBL:ESW17331.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW17331.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW17331.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002294; ESW17331.1; -; Genomic_DNA. DR RefSeq; XP_007145337.1; XM_007145275.1. DR GeneID; 18626778; -. DR KEGG; pvu:PHAVU_007G230700g; -. DR Proteomes; UP000000226; Chromosome 7. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 81 189 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 81 189 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 39958 MW; 29B14C557DF79114 CRC64; MSINHYSMEL PETALWWPQQ QQQPILMEPT PNPSSTSWPS ADPLCLNLNN QNDDVEEDEE EDRTTTTTQQ EETEDEKEPM FEKPLTPSDV GKLNRLVIPK QHAEKYFPLS GGGGGDSGEC KGLLLSFEDE SGKCWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDTGDVVL FERHRADAHR LFIGWRRRRH GETSPVHVSS RAVGHGKSGN GNSKNEAAAA TGGGLGWTRG FYSAHPYPTH QQHLHNHQPL PYQYDCLHAG RGSEGQRERR RAVGKSGSGS SSSSSSSRVL RLFGVNMECE AEDDSGPSTL ECSYNSTNMP STQGTQNPHH FYHPHPPQPQ PHQILRHQPY YYY // ID V7BLQ5_PHAVU Unreviewed; 911 AA. AC V7BLQ5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW18887.1}; GN ORFNames=PHAVU_006G079300g {ECO:0000313|EMBL:ESW18887.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW18887.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW18887.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW18887.1; -; Genomic_DNA. DR EMBL; CM002293; ESW18888.1; -; Genomic_DNA. DR RefSeq; XP_007146893.1; XM_007146831.1. DR RefSeq; XP_007146894.1; XM_007146832.1. DR GeneID; 18628132; -. DR KEGG; pvu:PHAVU_006G079300g; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 339 440 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 601 651 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 339 440 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 911 AA; 101042 MW; 793392AB8AA2B5ED CRC64; MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILEPLST YENSVFCSKF HHQQTGWREC NFCNKPIHCG CMVSRSLFEH LDYGGIGCVS CVNTSQLSTM RNIENPNGPV SLIKNNASDR PSSHSEGRLF ARGVDEGKLM QFCKIIEASE SSRWNNAQRD GIISRHGHNN QEAKCSFGEG DIGFSNVMKP SVQSLTFATL ENNRSPWEIK NIHEANVQPS LSMYLGNASG NNSVLPSAGE AVEGRLEGKP SPPFHQGQRS RPIFPKPLKS GLTMNVEIDK GTISQSRVAR PPADGRGKNQ LLPRYWPRIT DQELERLSGD LKSTVVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPSISQ SEGVPLRMQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QAMQLRAGDT VTFSRIDPGG KLVMGFRRAS NSADTQDTST SAQSNSAKGT TSAGTENLPS GSSHANLLLS MKGGNVEPHL NGQREHLHLG TGTSELLITE NNGMTNNSSV QQKFLSLEKK KTRNIGPKSK RLLIDNEDAR ELKLTWEEAQ DLLRPPPSVK PSIVTIEDQV FEEYDEPPVF GKRTIFSTCS SGVKEQWAQC DDCSKWRKVP IDALLPANWT CFDNAWDSIR CSCTVPEELS SGELENLLKT DKDFKKRRSD EKSKSIQEHE ASGLEALACA AALGENLVDT AESSAGATTK HPRHRPGCSC IVCIQPPSGK GRHKPTCTCN VCLTVKRRFK TLMLRKKKRQ SEREAEAAQK DQVLQKEESD TNETSRDDAT QLEKEVVGLS RSQAEGGESS AAGQIDLNSH PNREDMQVDI TGVMFCETDP STVREYMNQN GPRSYNNELQ NGENSSLHTS QSNVEGQRHF SDLRSFASIM WNQERRDEED SEPNQSQNNL C // ID V7BLT2_PHAVU Unreviewed; 841 AA. AC V7BLT2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_006G084200g {ECO:0000313|EMBL:ESW18944.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW18944.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW18944.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW18944.1; -; Genomic_DNA. DR RefSeq; XP_007146950.1; XM_007146888.1. DR GeneID; 18628181; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 128 230 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 715 799 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 128 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 841 AA; 93047 MW; 03226E3426EDE429 CRC64; MKLSTSGLGQ QGLEVGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EIDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSIF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRISVGMRFR MLFETEESGV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GSSSLHDGSR DEASNGLMWL RGGPGDQGLN SLNFQGGGML PWMQQRMDPT LLGSDQNQQY QAMLAAGLQN LGSGYLMKQQ MMNFQQPFHY LQQSGNSSSP LQLQPQQSIQ QSVSSNMLQP QAHVLTENLS QHLLQKPHNN QEVQAQQQQH SFQDPLLIPS DQLPQRQHSG VPSPSYSKPD FLDSSMKFPA SVSPGQNMLS SLCPEGSANL LNLSRSGPSL LSEQLPQQQW TQKYAPMQVN AYGSTVQYSG KDSAMVLPHL NSDTQNSTLF GVNIDSSGLL LPTTVPGYST SSADTNSSTM PLGESGFQGS LFGCMQDSSE LLQSAGHVDP QNQTQTFVKV YKSGSVGRSL DISRFSSYHE LREELAQMFG IEGKLEDPPR SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDI QKMGEQAVES LALGSGQRLN GTGAESQDIV SGPPSIGSLD Y // ID V7BMI4_PHAVU Unreviewed; 297 AA. AC V7BMI4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW19152.1}; GN ORFNames=PHAVU_006G100700g {ECO:0000313|EMBL:ESW19152.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW19152.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW19152.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW19152.1; -; Genomic_DNA. DR RefSeq; XP_007147158.1; XM_007147096.1. DR GeneID; 18628357; -. DR KEGG; pvu:PHAVU_006G100700g; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 8 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 192 292 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 8 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 192 292 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 34107 MW; F18206B95FB88A60 CRC64; MESARQALEF FKVFLLNKAS TQLQIPTSFT KFFNGIAPCK IILIDHDGKC WDVKLEKIEG RLVFKNGWQQ FAKEKNLEEG DFLVFQYDGM STFNVKIFSK TGCRKGATPP SREKVVPIVN LEKDSDEFGN KIQSNGIGKR SLPNTKLKLE SVLEGACPSE GARRRSKRLK EEKDKKNDKK LALTKHVPLQ NPHFQIYFDT PWRLKRVEIP KKPIKDMEIK LIGNIILRDE NDRSWPVSII STANQDRRYL GSGWLDFRQC NNIEEGCQCD FQFVVDKANV AKELLVRVRS KGGLQIV // ID V7BMV7_PHAVU Unreviewed; 717 AA. AC V7BMV7; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_006G114300g {ECO:0000313|EMBL:ESW19319.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW19319.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW19319.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW19319.1; -; Genomic_DNA. DR RefSeq; XP_007147325.1; XM_007147263.1. DR GeneID; 18628499; -. DR KEGG; pvu:PHAVU_006G114300g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 595 676 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 717 AA; 79713 MW; B047E5E6E75DA59E CRC64; MAHLEAAVRS VPSSQPETGV EDGDLYTQLW KLCAGPLVDV PCEGERVFYF PQGHMEQLQA STNQGLNQEL NQQIPHFNLP SKILCRVVHI QLLAEQETDE VYARITLLPE SNQEEPTTPD PSVPETQKQS FHSFSKILTA SDTSTHGGFS VLRRHATECL PQLDMTQTIP TQELAAKDLH GFEWKFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF LRGENGELRV GVRRVARQQS PMPSSVISSQ SMHLGVLATA SHAFLTSTMF VVYYKPRTSQ FIIGLNKYLE SVNKFSVGMR FKMRFEVEDS PERRFSGTIV GVGDVSPGWR NSQWRSLKAQ WDEPAIIPRP ERVSSWEIEP FVASTALNVT QQVVKSKRSR PPEVSSSEIG PNSPATALWY HGPSLSHDPT ALGGTSEVQS NESPVIWSTR MKEINVNPMN GNKSSSSRVR VEGMWPSSPH LSVSSNLFPD PKNSKAVTAQ SNVSGYAPVS CRPNDDLAHD PVECGKRSEN PMDCWVFGVN LTNNFTNVAL PDKELGCPAI IIPSGPKDSI PVAACETQAG QNHNYSLSNK VQKQIISDGS PSERHAKQAT VPSTRTRTKV QMQGVAVGRA VDLTVIKDYE ALIDELEKIF DIKGELRMQT KWAITFTDDE NDMMLAGDDP WPEFCCMAKR IFICSREDVN KLKNKHSACS SEAEETLLSQ DSQNREETQQ VSCDLTA // ID V7BPI4_PHAVU Unreviewed; 840 AA. AC V7BPI4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_006G084200g {ECO:0000313|EMBL:ESW18943.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW18943.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW18943.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW18943.1; -; Genomic_DNA. DR RefSeq; XP_007146949.1; XM_007146887.1. DR GeneID; 18628181; -. DR KEGG; pvu:PHAVU_006G084200g; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 714 798 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 840 AA; 92948 MW; 1428D3EFBBBF3E5D CRC64; MKLSTSGLGQ QGLEGEKKCL NSELWHACAG PLVSLPTAGT RVVYFPQGHS EQVAATTNRE IDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT FLPMELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSIFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYIKAVYHT RISVGMRFRM LFETEESGVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG SSSLHDGSRD EASNGLMWLR GGPGDQGLNS LNFQGGGMLP WMQQRMDPTL LGSDQNQQYQ AMLAAGLQNL GSGYLMKQQM MNFQQPFHYL QQSGNSSSPL QLQPQQSIQQ SVSSNMLQPQ AHVLTENLSQ HLLQKPHNNQ EVQAQQQQHS FQDPLLIPSD QLPQRQHSGV PSPSYSKPDF LDSSMKFPAS VSPGQNMLSS LCPEGSANLL NLSRSGPSLL SEQLPQQQWT QKYAPMQVNA YGSTVQYSGK DSAMVLPHLN SDTQNSTLFG VNIDSSGLLL PTTVPGYSTS SADTNSSTMP LGESGFQGSL FGCMQDSSEL LQSAGHVDPQ NQTQTFVKVY KSGSVGRSLD ISRFSSYHEL REELAQMFGI EGKLEDPPRS GWQLVFVDRE NDVLLLGDDP WESFVNNVWY IKILSPEDIQ KMGEQAVESL ALGSGQRLNG TGAESQDIVS GPPSIGSLDY // ID V7BQJ4_PHAVU Unreviewed; 878 AA. AC V7BQJ4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW20234.1}; GN ORFNames=PHAVU_006G191700g {ECO:0000313|EMBL:ESW20234.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW20234.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW20234.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW20234.1; -; Genomic_DNA. DR RefSeq; XP_007148240.1; XM_007148178.1. DR GeneID; 18629288; -. DR KEGG; pvu:PHAVU_006G191700g; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 336 437 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 564 614 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 336 437 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 878 AA; 96695 MW; 91869A9710AD9156 CRC64; MASASSSSSK LCFNSDCKEL RPERPKKGWR LRSGELAELC DRCGSAFEDG KFCEIFHSNA SGWRSCETCR KRIHCGCIVS SHSFMLLDPG GIECYTCARK NIIMPSNLPW PQSFSLQNRL SDRLRDLSAK GWNQLAGSGP VPWKQAPSLF NSASSSDLIS DVPSLAELSS SFDKMYCNER LPASALEKKS EDFPGLPVHW NVTICPREMK HMNGMRNEDK ASSCLNMCQQ PSSMKEESSP QPFGLPVPNS CQNERNGQLG VTGSHPQQTP PPPGKQFNGT MHLAPDSSGE AQVRNGRPRA DARGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRLEPEGRLV MGFRKASSAA PSDQDNETNK SGNGFSAHGE VELADPNSWS KVDKSGYIAK EALGSKSLIS RKRKSGLLGS KSKRLRIENE DLIELKITWQ EAQGLLRPPP SHIPSIVVIE GFEFEEYEEA PVLGKPTIFT SDNVGEKIQW AQCEDCLKWR KLPASALLPS KWTCSDNSWD PERSSCSAAQ ELTAEQLENL LPPCNSAVPK RMKATKQDPD NAEALEGLDT LANLAILGEG EALPASAQAT TKHPRHRPGC SCIVCIQPPS GKGPKHKQTC TCNVCLTVKR RFHTLMLRRE KKQSEKEAET TRKKQQQQHP QPLPSSEILL DEDSLPCSNT GDSSPNQNRE GNDGSDDDPN RIKSSASPFK GQIDLNIQPE REEELSPGSD SGGMMKLLHD AATERYLKQQ TVNSGTGDSA GSQSQLVGDA MREDKLSNGV THGSSSHSTD RNMANLCP // ID V7BSP3_PHAVU Unreviewed; 214 AA. AC V7BSP3; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW20984.1}; GN ORFNames=PHAVU_005G031300g {ECO:0000313|EMBL:ESW20984.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW20984.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW20984.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002292; ESW20984.1; -; Genomic_DNA. DR RefSeq; XP_007148990.1; XM_007148928.1. DR GeneID; 18629922; -. DR KEGG; pvu:PHAVU_005G031300g; -. DR Proteomes; UP000000226; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 98 204 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 98 204 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 214 AA; 24776 MW; 9C56E8EBB95F7738 CRC64; MQGEKDPQKW HENIFGNKRC KHSQNIAEEL GEASRFKDGG DVSLENLDQE AEFLSESSSP EVCFSSQEHL IRDSYSPSSL PAMENFREYI LEHGEPLHKK LTTSDVNVNQ NRLLLNKNHV EKSFLPLLKN DENIERGIQV PVYDAHQNTF SLTFKKWTNK YYVLNGGWKD FFQVHKLQKD DSITVCIFRH SSHNKLCFAL DYKKIGGDKI QNLS // ID V7BSU4_PHAVU Unreviewed; 734 AA. AC V7BSU4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_006G181200g {ECO:0000313|EMBL:ESW20098.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW20098.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW20098.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW20098.1; -; Genomic_DNA. DR RefSeq; XP_007148104.1; XM_007148042.1. DR GeneID; 18629181; -. DR KEGG; pvu:PHAVU_006G181200g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 162 264 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 162 264 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 734 AA; 80353 MW; 5CC49B34DAECA960 CRC64; MGLIDLNTTE DDEAPLSASS SSAASSSSSH SGISTSASTL VVPPPPPPPP PPSVCLELWH ACAGPLISLP KKGSVVVYLP QGHFEHVQDF PVTAYDIPPH VFCRVLDVKL HAEEGSDEVY CQVLLVPESE QLEQSLREGE IEADGEEGDT EAMVKSTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSQQRPSQ ELVAKDLHGL EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGI RRAAQLKGSG SFAVPSGQQL NPGTFMDVVN ALSTRCAFSV CYNPRFSSSE FIIPSHKFLK SLDSSYLVGM RFRMRFETED AAERRFTGLI AGISDVDPVR WSGSKWRCLL VRWDDMEAAR HNRVSPWEIE PSGSASSSSN MMAAGLKRTR IGMNSTKMEF PSPNGIGTSD FGESLRFRKV LQGQEILGVN PPFDGINAPS PRLYDLGRYY LGPNCSGIPP TGNNIRMPHA ASDFSCNGTG FSESFGFQKV LQGQEILPSQ PYGRSLSFEE ARANGRFGHF DGYQLLNSRN GWSVQMHDNA PHLHASVTPS QVSSPSSVLM FQQAVSPVSN CDYNNKKHSK MYQGLCASEV KARTFASSQS DDHTFSRRAP ERASSLGMFD VHNQLGSSQS HNSVSALRNN QELVSSCKSS CRLFGFSLTE DAHVANKEVD ASTITLPLNA GPSFTRLVED EFHPSRALQS KAVGSNCIKG VLQY // ID V7BU74_PHAVU Unreviewed; 314 AA. AC V7BU74; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW20600.1}; GN ORFNames=PHAVU_005G000700g {ECO:0000313|EMBL:ESW20600.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW20600.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW20600.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002292; ESW20600.1; -; Genomic_DNA. DR RefSeq; XP_007148606.1; XM_007148544.1. DR GeneID; 18629621; -. DR KEGG; pvu:PHAVU_005G000700g; -. DR PhylomeDB; V7BU74; -. DR Proteomes; UP000000226; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 211 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 211 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 314 AA; 35792 MW; F4B976E9F9D1C5FB CRC64; MEGRQRNYGG GSAPAERESK HFLKIILPSA IHATQMRIPE EFIKRFGDEL STVATITVPD GRVWKMRLKK CGKDVFFSSK WREFVNYYSL GYGSHLIFRY VGNSKFCVLI FDITAAEICY PPQTRGTNEP NSENWKRSKF EDQQQHQELV VGNGVETTDE DYVNLIRPSQ TKGRKKKCYY SHGKQLKSGC SENHSSWEIT KDVATASDRL IAKNPFVTCT IKSSRLYVSS EFAGKYLKPG VGTMLQNSNG EQWEVSCSCH SRSRAMIISK GWAKFVRDND LSEGDLCVLE LIKRDPIVLK FTVRGEAQYY DVDV // ID V7BVJ5_PHAVU Unreviewed; 664 AA. AC V7BVJ5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_006G221500g {ECO:0000313|EMBL:ESW20586.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW20586.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW20586.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002293; ESW20586.1; -; Genomic_DNA. DR RefSeq; XP_007148592.1; XM_007148530.1. DR GeneID; 18629590; -. DR KEGG; pvu:PHAVU_006G221500g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 6. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 118 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 540 633 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 118 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 664 AA; 74031 MW; F8899A3C056DF07D CRC64; MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV TSPDDPLPEP PRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQSNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM RFEGDEVPER RFSGTIVGVG DNKSSVWTNS EWRSLKVQWD EPSSILRPDR VSPWELEPLV STPPTNSQPS QRNKRSRPHV LPSTMPDSSM QGVRKSPVDS APFSYRDHQH GRDIYPPAKF NSTATGFLGF GGNCSASNKS IFWSSRTENS TESFSPVALK ESGEKRQGAA NGCRLFGIQL LDNCNGEESL PMVNLSGRVG DDGPLPSLDA ESDQHSEPSN INRYDIPSVS CDAEKSCLRS PQESQSRQIR SCTKVHMQGM AVGRAVDLTR FDGYEDLLRK LEEMFDIKDE LCGSTKKWQV VYTDNEDDMM MVGDDPWLEF CSIVRKIFIY TAEEVKKLSP KIGLPINEEV KPSKMDSEAV VNPDDQSSIV GSGC // ID V7BW76_PHAVU Unreviewed; 667 AA. AC V7BW76; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_005G134500g {ECO:0000313|EMBL:ESW22189.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW22189.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW22189.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002292; ESW22189.1; -; Genomic_DNA. DR RefSeq; XP_007150195.1; XM_007150133.1. DR GeneID; 18630986; -. DR Proteomes; UP000000226; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 666 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 73515 MW; D7A2A246F0D8B5A9 CRC64; MKETEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNLDFGAS RIPIPPLVLC RVAAVKFLAD PETDEVFARL RLVPLRNTEL DHEDGDNVDG NGAEGSEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG WSSFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGVGG PEAPCGWSSG GGGGGGLGIG PYGAFSAFLR EESKVVRNGC GRPKVSGESV REAIALAANN QPFEIVYYPR ANTPEFCIRT SAVRGAMRIQ WCSGMRFKMP FETEDSSRIS WFMGTIASVQ VLDPIRWPNS PWRLLQVTWD EPDLLHNVKR VSPWLVELVS NVPVIHLAPF SPPRKKLRFP QHPEFPLDVQ FPIPTFSGNP FGSSTSSPLC CLSDNAPAGI QGARHAQIGI TLSDLHLNNN KLQLGLLPTN VRQLDLHTGI SNVNITNHGK SKESLSCLLT MGSSRKSLEK SDRVKRHQFL LFGQPILTEQ QISRSSGDVF SQNCTATDDE NKEKKEKGFS DSQSSVSPGK SSSTTEFSWQ LGSDTSHCKV FMESEDVGRT LDLSCLGSYD ELYMRLASMF GIERSEMLSH VLYRDATGAL KQTGEEPFRY QSISCSSVIS YSLFVFY // ID V7BYQ5_PHAVU Unreviewed; 698 AA. AC V7BYQ5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_005G134500g {ECO:0000313|EMBL:ESW22188.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW22188.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW22188.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002292; ESW22188.1; -; Genomic_DNA. DR RefSeq; XP_007150194.1; XM_007150132.1. DR GeneID; 18630986; -. DR KEGG; pvu:PHAVU_005G134500g; -. DR Proteomes; UP000000226; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 112 214 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 585 665 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 112 214 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 698 AA; 76799 MW; F570A3C2660B390D CRC64; MKETEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNLDFGAS RIPIPPLVLC RVAAVKFLAD PETDEVFARL RLVPLRNTEL DHEDGDNVDG NGAEGSEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG WSSFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGVGG PEAPCGWSSG GGGGGGLGIG PYGAFSAFLR EESKVVRNGC GRPKVSGESV REAIALAANN QPFEIVYYPR ANTPEFCIRT SAVRGAMRIQ WCSGMRFKMP FETEDSSRIS WFMGTIASVQ VLDPIRWPNS PWRLLQVTWD EPDLLHNVKR VSPWLVELVS NVPVIHLAPF SPPRKKLRFP QHPEFPLDVQ FPIPTFSGNP FGSSTSSPLC CLSDNAPAGI QGARHAQIGI TLSDLHLNNN KLQLGLLPTN VRQLDLHTGI SNVNITNHGK SKESLSCLLT MGSSRKSLEK SDRVKRHQFL LFGQPILTEQ QISRSSGDVF SQNCTATDDE NKEKKEKGFS DSQSSVSPGK SSSTTEFSWQ LGSDTSHCKV FMESEDVGRT LDLSCLGSYD ELYMRLASMF GIERSEMLSH VLYRDATGAL KQTGEEPFSE FMKTAKRLTI LSDSSSKDSR RIWMTGTRNA EHGLDATSNK TGPMSIFA // ID V7C011_PHAVU Unreviewed; 808 AA. AC V7C011; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_005G136900g {ECO:0000313|EMBL:ESW22216.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW22216.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW22216.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002292; ESW22216.1; -; Genomic_DNA. DR RefSeq; XP_007150222.1; XM_007150160.1. DR GeneID; 18631010; -. DR KEGG; pvu:PHAVU_005G136900g; -. DR Proteomes; UP000000226; Chromosome 5. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 165 267 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 680 762 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 165 267 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 808 AA; 89408 MW; 72C8F5EAE20203C8 CRC64; MEIDLNYAVI EAEKTASCNG ECGKGAACVC SLSSPTCSSS GSSSASVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQASSFAPFS PMDMPTYDLQ PQIFCRVVNI QLLANKENDE VYTQVTLLPQ AELAGMYLEG KELEELGADE EGNETTPTKS TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HGVQWKFRHI YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRGENGELR LGIRRAARPR NGLPESIVGS QNYYPNFLSS VANAISAKSM FHVFYSPRAS HADFVVPYQK YVKSIKNPVT IGTRFKMRFE MDESPERRCT SGIVTGTSDL DPYKWPKSKW RCLMVRWDED IEINHQDRVS PWEIDPSASL PPLSIQSSRR LKKLRPGLQG ASPSHLITGG SGFMDSEESV RSSKVLQGQE NSGFMSLYYG CDTVTKQPEF EIRSPTSHPN FASTGVRKIA AGEFMRVHPS SYAGFSETNR FPRVLQSQEI CQLRSMTGKV DLNFGAWGKP SLSCTNYNLR QATIPNFHSL GPEVIQTAYF PYGDIHKAGQ VSGTGMMCSK TSNFQGENVP FNSPSSQSGI MRNEVGRSDV TIPNEQKLQD NISGAASLGA TMRIPNDDNF NGKVKACKLF GFPLSGEATT QNLQQNSAKR SCTKVHKQGS LVGRAIDLSR LNSYSDLLIE LERLFSMEGL LRDPKKGWRI LYTDSENDIM VVGDDPWHEF CEVVSKIHIH TQEEVEKMTI GMINDDTQSC LEQAPVMIEA SKSSSVGQPD SSPTVVRI // ID V7C400_PHAVU Unreviewed; 157 AA. AC V7C400; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW24892.1}; GN ORFNames=PHAVU_004G169400g {ECO:0000313|EMBL:ESW24892.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW24892.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW24892.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002291; ESW24892.1; -; Genomic_DNA. DR RefSeq; XP_007152898.1; XM_007152836.1. DR GeneID; 18633315; -. DR KEGG; pvu:PHAVU_004G169400g; -. DR Proteomes; UP000000226; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 87 157 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 87 157 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 157 AA; 18122 MW; A2681B0ECCA8129A CRC64; MAASSSNSGR GKGMVEGKKE AKEIQFNDEL QLEFILDAGI VKDCELSLPY GVQLTNDKWN LFLPLLGFEE TLIGFLKEEE DVREGIQVNV YDRGGHEFEM MLKKWVKDSN EFYVLNRGWF SFCNQHGLGQ EDLIALRGFR HSITDMLSFV VTFRRMR // ID V7C4C0_PHAVU Unreviewed; 1106 AA. AC V7C4C0; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_004G177600g {ECO:0000313|EMBL:ESW24989.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW24989.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW24989.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002291; ESW24989.1; -; Genomic_DNA. DR RefSeq; XP_007152995.1; XM_007152933.1. DR GeneID; 18633400; -. DR KEGG; pvu:PHAVU_004G177600g; -. DR Proteomes; UP000000226; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 994 1078 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1106 AA; 122271 MW; C9F5551B37D06D10 CRC64; MKTHPPQPEG GSAAPNPTQE KRSINPELWQ ACAGPLVNLP PSATHVIYFP QGHSEQVAAS LKKDVDSQIP NYPNLPSKLL CLLHNLTLHA DPETDEVYAQ MTLQPVPSFD KDALLRSDLA LKSTKPQPDF FCKQLTASDT STHGGFSVPR RAAEKIFPHL DYSMQPPAQE LVARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VIPLAKYYKS VYSHQPSLGM RFRMMFETED SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTAGE KRSRVSIWEI EPVTAPFFLC PPPFFRSKRP RQPGMPDDEL SDFDNIFKRT MPWLGDDMCM KDPQGLPGLS LAQWMNMQQN PALASSLQPN FAPSLSGSIL QNIPGADISR QLGFSAPQIS PSNNVAFNTQ RLLQTAQQLD HLQKLPSTSS TLGTVLPPQQ QLGDITQQSR QNLANQTMPQ GQVQAQLLHP QNIVQTNNIQ QQQPSIQNHQ MHRSLSQNPS QQQTIIGQSP IPDHLQQLQM SDNQIQLHLL QKFQQQQQKQ THLAQQTVLQ QPTQLTQIQD QQRQILDKTH NLSRAVTPGQ VLEIPPLLKN SLPEANSISN QITKANFQNN IQFPQQPKLQ QQQPGLLSEM SGHMALLPTH TTNQLSAAGS SILNGAAGAG QSVITDDIPS CSTSPSTNNC ASALAPLINS RLQRNTIVGD DMAQSASTIL SSSALETMSS NANLLKDLQP KCDVKPSLNI SKNQNQGHFG LQSYLNGSAA HTDCLDTSSS TTSVCLSQSD AHMHQNNNPL AYNPHSMLFR DNSQDGEVQA DARGNIPYAN NMDSQMGMQL NPDSLLTKGT LGLGKDLSNN FSSEGLLGNY ENNRDAQQEL SSSMVSQTFG VPDMAFNSID STIDDSSFLN RGTWAPPPAP PPPPLPPTQF QRMRTYTKVY KRGAVGRSID ITRYSGYEEL KQDLARRFGI EGQLEDRQRI GWKLVYVDHE SDVLLVGDDP WEEFVNCVRC IKILSPQEVQ QMSLDGDFGN GGLPNQACSS SDGGNT // ID V7C4R2_PHAVU Unreviewed; 435 AA. AC V7C4R2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW25147.1}; GN ORFNames=PHAVU_003G011300g {ECO:0000313|EMBL:ESW25147.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25147.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25147.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25147.1; -; Genomic_DNA. DR RefSeq; XP_007153153.1; XM_007153091.1. DR GeneID; 18633530; -. DR KEGG; pvu:PHAVU_003G011300g; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 5 98 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 298 393 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 5 98 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 298 393 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 435 AA; 49120 MW; 467EA124F5B14B5C CRC64; MARPCFHKLV LSTTIQSRQL RIPDTFLRKY GTQLSTIATL TVPDGSIWRI GLKKADNKIW FVDGWQDFVQ RYSVGVGYFL VFMYEGNSSF IVHIFNLSTA ELNYQSAIRN HIEGPCYANY NHIFEEMEDV DSIDLSDLSP AYLASGAMQN KGFAGSGDQL TPGKSHTPAL QNLFNGGSKL NRVNWGDGGS AYSSKAANSQ GTQSTRDIGV QFNAVEFKRS TEELKLRYSN EESVNKTAKK KRKSESQGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKA FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTVENNLGEG DVCVFELLRT KEVELQVTVF RVTEDAGLLH TPLAVQQQSQ NMSHTKLLNP HLQHRVSSTV KLIRN // ID V7C692_PHAVU Unreviewed; 160 AA. AC V7C692; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW24893.1}; GN ORFNames=PHAVU_004G169500g {ECO:0000313|EMBL:ESW24893.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW24893.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW24893.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002291; ESW24893.1; -; Genomic_DNA. DR RefSeq; XP_007152899.1; XM_007152837.1. DR GeneID; 18633316; -. DR KEGG; pvu:PHAVU_004G169500g; -. DR Proteomes; UP000000226; Chromosome 4. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 160 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 160 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 160 AA; 18879 MW; DA2B594F42943C22 CRC64; MAEGSSNDAG KGKGIAQERE SWREIMQKDE MQVEFVFTIG HVKDLELSMP YRAQLTNDKW NLFLRVPYLE EILLQFLKEE EEQELKEGLP VTVYDKGGHE FPMMLKKFDK DSTSYYVLNR GWFNFCDQKL LQENDVVALR TFRHAITDKL SFLVTFIKLR // ID V7C6V6_PHAVU Unreviewed; 293 AA. AC V7C6V6; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW25103.1}; GN ORFNames=PHAVU_003G007600g {ECO:0000313|EMBL:ESW25103.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25103.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25103.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25103.1; -; Genomic_DNA. DR EMBL; CM002290; ESW25104.1; -; Genomic_DNA. DR RefSeq; XP_007153109.1; XM_007153047.1. DR RefSeq; XP_007153110.1; XM_007153048.1. DR GeneID; 18633493; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 198 293 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 198 293 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 293 AA; 33954 MW; F3F47956FD3D9286 CRC64; MSSQCQGVQF LKVIVESILQ SGTMKVPTSF VSRHWQGMPN PVILSLPNGS KSKVFWLNQD GGVWFCYGWK EFAKYSKLDV SHSIVFRYEG NSCFNVIIFG ESGLEIEYPL SRDATNEEVG EIDEASYFCA NLSEERSKRP REEAQEEEEE KSNRQKTCSD YSKHKNSGTS SNGQEDFRTK LRMLREKVEE MFNYNPNHFT CVIKEKHTER DLLVMPAEFA KPYLHKEGTA TLFVEHGRTW KVETEANSHK QLEVVFGWRE FLLDNKLKLG DICAFEVLDR ELLLFKVTIC RLE // ID V7C6Z5_PHAVU Unreviewed; 653 AA. AC V7C6Z5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_003G075800g {ECO:0000313|EMBL:ESW25909.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25909.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25909.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25909.1; -; Genomic_DNA. DR RefSeq; XP_007153915.1; XM_007153853.1. DR GeneID; 18634198; -. DR KEGG; pvu:PHAVU_003G075800g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 538 631 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 653 AA; 73277 MW; CE840D4B0D5E2018 CRC64; MAFSASTHKS AGLLPGAIND DLYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASMY EGLEQQMPSF NLPSKILCKV VNVHLRAESE TDEVYAQITL LPELDQSEVT SPDDPLTESP RVKIHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR HIFRGQPKRH LLTTGWSVFV SSKKLVAGDA FIFLRDENGE LRVGVRRVMR QQSNVPSSVI SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSV NKYLEAKSHK LSVGMRFKMR FEGDEIPERR FSGTIVGVGD NKSLVWPDSE WRSLKVQWDE PLSILRPDRV SSWELEPHVS TTPANPQPTQ RNKRARPLIL TSTMPDSSLQ GMWKSPVEST SFSYCDPQHG RGLYPSPKFN PSATILGFSG NGFVGPPSNK SIYWSNRVQN FLESMSDTVP KEAGEKRQDT GNGCRLFGIQ LLENSNAEEC LQTVTLSGRL GDDRFVPSLD AESDQPSVSC DAEKSCLSPQ ELQSRQIRSC TKVHMQGMAV GRAVDLTRFH GYQDLLKKLE EMFDIKTELC GSIKKWQVVY TDNEDDTMMV GDDPWDEFCS VVRKIFIYTA EEVKKLSPKI GLSMNENRTS NPEEQSSNMG PSC // ID V7C727_PHAVU Unreviewed; 353 AA. AC V7C727; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW25148.1}; GN ORFNames=PHAVU_003G011300g {ECO:0000313|EMBL:ESW25148.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25148.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25148.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25148.1; -; Genomic_DNA. DR RefSeq; XP_007153154.1; XM_007153092.1. DR GeneID; 18633530; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 216 311 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 216 311 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 353 AA; 39641 MW; B47D8EE5BD665458 CRC64; MYEGNSSFIV HIFNLSTAEL NYQSAIRNHI EGPCYANYNH IFEEMEDVDS IDLSDLSPAY LASGAMQNKG FAGSGDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSAY SSKAANSQGT QSTRDIGVQF NAVEFKRSTE ELKLRYSNEE SVNKTAKKKR KSESQGEEPS GENEEEAEMR YRFYESASAR KRTVTAEERE RAINASKAFE PTNPFCRVVL RPSYLYRGCI MYLPSCFAEK NLNGVSGFIK LQLSNGRQWS VRCLYRGGRA KLSQGWFEFT VENNLGEGDV CVFELLRTKE VELQVTVFRV TEDAGLLHTP LAVQQQSQNM SHTKLLNPHL QHRVSSTVKL IRN // ID V7C748_PHAVU Unreviewed; 347 AA. AC V7C748; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW25100.1}; GN ORFNames=PHAVU_003G007400g {ECO:0000313|EMBL:ESW25100.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25100.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25100.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25100.1; -; Genomic_DNA. DR RefSeq; XP_007153106.1; XM_007153044.1. DR GeneID; 18633491; -. DR KEGG; pvu:PHAVU_003G007400g; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 100 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 188 285 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 100 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 188 285 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 347 AA; 40592 MW; A3EAB01698DCA6E5 CRC64; MSSQCHGVHF LKVFAEHNLQ RGIMKVPTSF VSRHWEGMSN PVILSLPNGS KNKVFWVNKD GDVWFCNGWK EFAKYSKLDV SHLLVFEGNS CFNVIIFGKS DLEIEYPLSR DATDEKVEEI DEGSDFSLKN SEERSKRPRE EAQEEIPNKH IKIECSDYSN HNNTGDFKKK LIMFHEKVKE TFKSNHEHFT CIIRKTYIER DLLIMPEEFG ILYRHKEGNA ATLFVEHGRT WEVQTKVNSY GQFVFSSGWR KFLWDNKLKL GDVCAFHEML DSEPFLFKVT IYPLEDNSST SLFKVFLFNI FNVHFQVKKE FLICLLHPLI HPLKQGHQSL EMISLSSSSQ KCRYDKL // ID V7C754_PHAVU Unreviewed; 294 AA. AC V7C754; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW25105.1}; GN ORFNames=PHAVU_003G007600g {ECO:0000313|EMBL:ESW25105.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25105.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25105.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25102.1; -; Genomic_DNA. DR EMBL; CM002290; ESW25105.1; -; Genomic_DNA. DR RefSeq; XP_007153108.1; XM_007153046.1. DR RefSeq; XP_007153111.1; XM_007153049.1. DR GeneID; 18633493; -. DR KEGG; pvu:PHAVU_003G007600g; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 199 294 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 199 294 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 294 AA; 34026 MW; 0ED2F5EE1E9EC2D5 CRC64; MSSQCQGVQF LKVIVESILQ SGTMKVPTSF VSRHWQGMPN PVILSLPNGS KSKVFWLNQD GGVWFCYGWK EFAKYSKLDV SHSIVFRYEG NSCFNVIIFG ESGLEIEYPL SRDATNEEVG EIDEASYFCA NLSEERSKRP REEAQEEEEE KSNRQKTCSD YSKHKNSAGT SSNGQEDFRT KLRMLREKVE EMFNYNPNHF TCVIKEKHTE RDLLVMPAEF AKPYLHKEGT ATLFVEHGRT WKVETEANSH KQLEVVFGWR EFLLDNKLKL GDICAFEVLD RELLLFKVTI CRLE // ID V7C811_PHAVU Unreviewed; 451 AA. AC V7C811; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW25410.1}; DE Flags: Fragment; GN ORFNames=PHAVU_003G033400g {ECO:0000313|EMBL:ESW25410.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25410.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25410.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25410.1; -; Genomic_DNA. DR RefSeq; XP_007153416.1; XM_007153354.1. DR GeneID; 18633758; -. DR KEGG; pvu:PHAVU_003G033400g; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 94 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 221 313 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 353 449 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 94 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 221 313 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 353 449 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESW25410.1}. SQ SEQUENCE 451 AA; 52303 MW; E49F12A7E31D4F20 CRC64; HFCKIILRPN LAHGILNLPK MFTRKHGDGM SNPVFLRSPD GTEWKIYWVR SDGEIWFQNG WKEFATYYSL DHGHLLFFEY QGTTHFQVHI FDNSALEIDY PSHTTHCRKE NLVHISDDSN ELLLEQLSCQ NTRVKPTLSS PQPCKKMKNS ITTNVVRSPN LVHLHQHVQT KSPSIQEEKS IKQKLHEVEG KHAFNSECSK VEQLTSTALK KAITFRPEHP FFLLVMKESL IKRYYLKIPP HFVEKYLKNT REVVNLEVLD GRTWPVIYSA PRISGGWKKF ASENNLNVGD VCVFEMIKRI QGLAFIVSIF RGAEEPSFPI SQVKDFQLES DFKSKILTRA HKEASKFKSE NPFFMVTLPS KENTTRYLCV PIYFARKYLI KFNQNVMMIQ FRNKLWPVKF VCNSSSSAKF SAGWALFARE NNLKPGDICV FELVNRKDAT LVVHVFRSHG N // ID V7C866_PHAVU Unreviewed; 313 AA. AC V7C866; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW25101.1}; GN ORFNames=PHAVU_003G007500g {ECO:0000313|EMBL:ESW25101.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW25101.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW25101.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW25101.1; -; Genomic_DNA. DR RefSeq; XP_007153107.1; XM_007153045.1. DR GeneID; 18633492; -. DR KEGG; pvu:PHAVU_003G007500g; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 102 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 203 298 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 102 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 203 298 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 313 AA; 36721 MW; F3D761603DDE84F8 CRC64; MSSQYHGVHF FKVIVESTLQ RGIMKIPTSF VRRHWEGMSN PVILSLPNGS KSKVFWQNKD GGVWFCNGWK EFAKYSKLDV SHFIVFRYEG NSCFNVIIFG KSALEIEYPL SRDATNEEVE EIDEGSDFSL KFSEERSKRP REEAQEEEEE SPNKHKKRAC SDYSKHKNTG SSRASEHCKG DFKKKLRMFH KKVKEMFKSN HKHFTCIIRK TYTERDLLIM PAEFAKPYLH KEGTATLFVE HGRTWKVQTK VNSHEQFVFS SGWRKFLLDN KLKLGDVCAF EMLVSEPFLF KVTIYPLEDN SNTPLFKGIH YYY // ID V7C8N6_PHAVU Unreviewed; 1163 AA. AC V7C8N6; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_003G128800g {ECO:0000313|EMBL:ESW26552.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW26552.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW26552.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW26552.1; -; Genomic_DNA. DR RefSeq; XP_007154558.1; XM_007154496.1. DR GeneID; 18634750; -. DR KEGG; pvu:PHAVU_003G128800g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1036 1119 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 495 556 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1163 AA; 130353 MW; D7D0811AA6D1940E CRC64; MKAPSNGFLP NSGEGERKTI NPELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQCR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPTLDYSMQ PPAQELVAKD LHDNTWPFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEMKHL LLGIRRANRQ QSALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPARWKNSQW RNIQVGWDES TAGERPSRVS IWEVQPVVTP FYICPPPFFR PKFPRQPGMP DDESDMENTL KRGMPWLGDD FGMKDASSSI FPGFSLVQWM NMQPNNHLSA AQSGCFPSML PSNTLHGNLA TEDPSKLLSF QAPVLSSPSL QLNKPNLPNQ INQLQQSPVS WPQQQQQQQQ LQQQQQQQLQ QQQLQQQQQQ LQQQQQQQQL QQQQQLQQQQ QLQQQQQQQL QSLLQIPMNH LQQQRQQQLP EPQNLSLLQQ LPQQLGQQPQ KQQQPSQHAT LMHNGVVASN QITSQFVQPP MAYGQLQQQQ LLSGGIQPQQ GIQSASKNTF PLTSLSHDSQ FQQQIDQQAN LLLRQQQQQQ TQLQQSPLQL LQHNLPQIPS QQQLPASQML QPNSSEQQLH LQLLQKLQHQ QQQQHLSTST PLLQSQLLPQ QNTHQQNQQL PQTQPPVSHH QPHQVANNAL STEKLLNSNN FSSSSLMQSQ QIPMNQSQNT QKSLTITRAP STLTDGDAPS CSTSPSTNNC QVSPPNLLKR NQQLPATLGG SLIVEPTSNL IQELHSKPDM QNKHDLLNLK GPDQLKYKGI ITDQLEASSS GTSYCLDPGN VQQNLPLSNF CMEGDAQSHP RNSLPFDTNL DDLTPDTMLL RGYDSSKDLQ NLLSNYGGAP RDIETELSTA DISSQSFGVP NMPFKPGCSS DVVINEAGVL NNNGLRANQP PPPRMRTYTK VQKRGSVGRC IDVTRYRGYD ELRHDLAKMF GIEGQLDPQR TDWKLVYVDH ENDILLVGDD PWDEFVSCVQ SIKILSHSEV QQMSLDGDLG GTVPIPNQAC SGTDSGNAWR GQYEDNSAAS FNR // ID V7CAG4_PHAVU Unreviewed; 387 AA. AC V7CAG4; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW26348.1}; GN ORFNames=PHAVU_003G111800g {ECO:0000313|EMBL:ESW26348.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW26348.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW26348.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW26348.1; -; Genomic_DNA. DR RefSeq; XP_007154354.1; XM_007154292.1. DR GeneID; 18634575; -. DR KEGG; pvu:PHAVU_003G111800g; -. DR KO; K09287; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 73 128 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 204 312 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 73 128 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 204 312 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 387 AA; 42254 MW; 22F3716EC36A72C5 CRC64; MDCMDESTTT ESLSISLSPT ISSEDKLVPP SKNLSPPPPS NTLCRVGSGA SAIVDPDGAG NTEAESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDIAAQRFRG KDAVTNFKPV SGGDGDDDDG EAEFLNSHSK SEIVDMLRKH TYNDELEQSK RSRGVVRRRG GAAGAGTGNS ISGACFVKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQSVNGVSA TAAKGVLLNF EDVGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD TVCFHRSTGP DKQLYIDWKA RNNSVNEVGL FGPVGPVVEP IQMVRLFGVN ILKLPGSEAN NNNNASATIP GFCNGKRREM ELFSLECSKK PKIIGAL // ID V7CE54_PHAVU Unreviewed; 706 AA. AC V7CE54; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_003G290200g {ECO:0000313|EMBL:ESW28482.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW28482.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW28482.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW28482.1; -; Genomic_DNA. DR RefSeq; XP_007156488.1; XM_007156426.1. DR GeneID; 18636401; -. DR KEGG; pvu:PHAVU_003G290200g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 134 236 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 134 236 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 706 AA; 77659 MW; 75566D586E50B5C4 CRC64; MPALIDLNSA TEDHETPSSR PSSVCLELWH ACAGPMISLP KKGTLVVYFP QGHLEQHLHD FPLPASANIP SHLFCRVLDV KLHSEEGSDE VYCQVVLVPE SEQGHQKLRE GEIDADGEEE DAEAVMKSTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP SQELVAKDLH GQEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSRDAVLF LRGEDGELRL GIRRAAQLKS GSTISTFAGQ QLNHSSLLDV VNALSARCAF SVHYNPRVSS SEFIIPIKKF LRSLDYSYSV GTRFRMRFET EDAAERRFTG LIVGITDVDP VRWPGSKWRC LMVRWDDLEA TRHNRVSPWE IEPSGSASTA NNMISAGLKR TKIGLPSTKL DFQVSNAIGA SDFGESLRFQ KVLQGQEMLG VNTTFDSTNG QGHQLSDLRR CYPGSNCSRI AATGNSIGIP QVSSNVSCNG IGFSESFRFQ KVLQGQEILP SQPYGRALSV DEACGNGRFG PFDGYHTLRS RNGWSSHLSN SSSHLHPPVP SGQVSSPSSV LMFQQAHNPV SNSDYNSKIS QVMEGKVQQR SSYTSEAKGG KFVSTPYEPL RGLAQEGTNS YGVSNLHNQF ETSRSHDSIS ALRATQELVP TCKSRCRVFG FSLTEGAPVA SKEVAGTDPS AVTCSGPSFA RHAEDDFHPV HSKAVGSYCT KGVLQY // ID V7CF75_PHAVU Unreviewed; 483 AA. AC V7CF75; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW27925.1}; GN ORFNames=PHAVU_003G244400g {ECO:0000313|EMBL:ESW27925.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW27925.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW27925.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002290; ESW27925.1; -; Genomic_DNA. DR RefSeq; XP_007155931.1; XM_007155869.1. DR GeneID; 18635928; -. DR KEGG; pvu:PHAVU_003G244400g; -. DR PhylomeDB; V7CF75; -. DR Proteomes; UP000000226; Chromosome 3. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 122 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 122 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 483 AA; 54959 MW; 0C3EF4B7330A4D9A CRC64; MVVIDERNRD RANRRDVVEF PQYDQAVTVA YYGEELHGGV PLPHSSRMSP LNMDKQNKVV ENKYKRLNNN QTKQATPAEA QKFSSSMKAA VEGTSSRGEV MSSAVLQAEE VQSNLRPEFP SFVKSLIRSH VASCFGMGLP VSFCKRHLPD KDTTIILEDE YGKEYNTKFI ACKMVLSAGW RQFSAEHKLQ EGDAVVFQLV EPTKFKIYII RANNTRELDG AFLNLDSCTK QKMGGKDSTD TDVVTCNSSK RKHGKSVPLD IQKKKKANLS RLRPKAGPSV EQSENDSEEA LSEVVEEFKM LEFEDMRGFE NFSIIVEGVS IDVEFPTEVR NKYYRLCCSQ HAFLHENLIK GMNYKLIAGI ISETVNIADA IRVSVICTPR FEFANWDKTL LAFEHLGMNV EFLRIRLRRL VSIAYEKNDV SEAKKYLAYR NEPSRADDEI RIMEVKLEEL KGACNGFGAY LGSLKGKAEN YQMKFRREVD APW // ID V7CHZ0_PHAVU Unreviewed; 190 AA. AC V7CHZ0; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW29812.1}; GN ORFNames=PHAVU_002G100800g {ECO:0000313|EMBL:ESW29812.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW29812.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW29812.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002289; ESW29812.1; -; Genomic_DNA. DR RefSeq; XP_007157818.1; XM_007157756.1. DR GeneID; 18637512; -. DR KEGG; pvu:PHAVU_002G100800g; -. DR Proteomes; UP000000226; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 109 167 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 109 167 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 190 AA; 21447 MW; 39E404B2943D1263 CRC64; MQKILTSLEA EASTGFKSHS SCSTMSSRRS NGRVASGRVA LEKEVPLPQL PDHTTNLQWD EVKPLSGKPY SHNILSPTNL CPRYYMWLAS NLRLELPSCE VPTILTYMGK SWDMVYCGQN KQQVFNVAGW KKFAVENCLR IGDACIFDLM ESSDKKIIFE VQILRGDIPS EILENEMITG QSREMPIVLN // ID V7CKD2_PHAVU Unreviewed; 189 AA. AC V7CKD2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW29813.1}; GN ORFNames=PHAVU_002G100800g {ECO:0000313|EMBL:ESW29813.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW29813.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW29813.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002289; ESW29813.1; -; Genomic_DNA. DR RefSeq; XP_007157819.1; XM_007157757.1. DR GeneID; 18637512; -. DR Proteomes; UP000000226; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 166 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 108 166 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 189 AA; 21348 MW; 3D52671273C3D147 CRC64; MQKILTSLEA EASTGFKSHS SCSTMSSRRS NGRASGRVAL EKEVPLPQLP DHTTNLQWDE VKPLSGKPYS HNILSPTNLC PRYYMWLASN LRLELPSCEV PTILTYMGKS WDMVYCGQNK QQVFNVAGWK KFAVENCLRI GDACIFDLME SSDKKIIFEV QILRGDIPSE ILENEMITGQ SREMPIVLN // ID V7CMB3_PHAVU Unreviewed; 386 AA. AC V7CMB3; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW31332.1}; GN ORFNames=PHAVU_002G229800g {ECO:0000313|EMBL:ESW31332.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW31332.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW31332.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002289; ESW31332.1; -; Genomic_DNA. DR RefSeq; XP_007159338.1; XM_007159276.1. DR GeneID; 18638840; -. DR KEGG; pvu:PHAVU_002G229800g; -. DR Proteomes; UP000000226; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 169 270 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 169 270 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 386 AA; 42976 MW; C37CB4F271B25947 CRC64; MDNFPDPVSA TTTNPLILEQ RSMGELNNVN FPVDNSGHVG FPDPYYAPFD QNMQFQQVNQ YPLHTLQTGQ PNAIYGAPNS EVQGWSQQQP EEEEYRKSVG TLTSKVARDK RKQVRQKSKS VPVAPLVPTK GIIKEQPVPG GGSDGKLTIN QDRIFAVFCS PDGKLEEVFT KQLKNSDVSV LGRIVLPKRE VEAKLPPLTD KEGKDIMVKD VYSGMIWTLK YKYWSNNRSR MYVLENAGDL VNHYELQMGD LITIYEDERK NLYVWARKKR NPEGAVSLSK KEVEDANNLL TSINGGGSSP SGAKLGMNIA ERDQLSNIAG NGAPSQTTIE ATPPALPAPP ALPAPFGGNN QWISDEDVYG GLDNIFEIEN SFHSFDHLKD YKTWPY // ID V7CMF5_PHAVU Unreviewed; 908 AA. AC V7CMF5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_002G233600g {ECO:0000313|EMBL:ESW31377.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW31377.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW31377.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002289; ESW31377.1; -; Genomic_DNA. DR RefSeq; XP_007159383.1; XM_007159321.1. DR GeneID; 18638878; -. DR KEGG; pvu:PHAVU_002G233600g; -. DR Proteomes; UP000000226; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 775 859 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 908 AA; 100797 MW; ED69ED675675EB0A CRC64; MRLSSAGFSP PPQEGERRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE IDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPALDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESGVR RYMGTITGIS DLDPTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD DFGLNSSLLW LRDSDRGLQS PTFQGIGVNP WMQPRFDPSM LNMQTDMYQA AAAAAAVQEM RGLDPSKQHS ASILQFQQPQ NFPNRTAAFV QAQMLQQTQH QQIFGNNQEN PHSPQSHLQT QAHLQQQLQH QHSFNSQNHH QHQQQQLRQT QQQQQQQQVV DNQQISSAVS SMSQFVSAPP PQSPPMQAIS SLCQQQNFSD GNSVPTIVSP LHSILGSFPQ DETSHLLNLP RTSSWIPVQN SSGWPSKRVA VDPLISSGVS QCVLPPVEQL GQPQSTVSQN AITLPPFPGR ECSIDQEGSN DPQNHLLFGV NIDPSSLLMP NGMSNLKGVS SNNDSSTLPY QSSNYLNTTT GTDSSLNHGI TPSIGGESGY LQSPENAGQG NPLNKTFVKV YKSGSFGRSL DITKFSSYHE LRSELAQMFG LEGELEDPVR SGWQLVFVDR ENDVLLLGDG PWPEFVNSVW CIKILSPQEV QQMGNPGLEL LNSVPIQRLS NGICDDYVSR QDPRNISPGI TAVGSLDY // ID V7CN10_PHAVU Unreviewed; 913 AA. AC V7CN10; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_002G177600g {ECO:0000313|EMBL:ESW30728.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW30728.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW30728.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002289; ESW30728.1; -; Genomic_DNA. DR RefSeq; XP_007158734.1; XM_007158672.1. DR GeneID; 18638300; -. DR KEGG; pvu:PHAVU_002G177600g; -. DR Proteomes; UP000000226; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 1.25.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR011989; ARM-like. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 780 864 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 913 AA; 101209 MW; 1A77880F6D9B054C CRC64; MKLSSAGFST PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE VDGHIPNYPS LPPQLICQLH NVTMHADTET DEVYAQMTLQ PLSPQEQKEA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESGVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHAGMKD DDFGINSSLM WLRDTERGLP SLNFPGVGVS PWMQPRLDPS MMNYQTDVYQ AMAAAALQDM WTSDPSKQHP TSLLQFQQPQ NFLNRSSPLV QTQILQQSQS QQSFPNSQEI PHPSQSQAQT HFQQHLQHQH SFNNQNQHHL LQQQQQQQQS QQPQQQQQQL QQQQVVDHQQ ISNAVSTMSQ FVSAPQSQSP PMQAISSLGH QQSFSDSNGN PVTNAIVSPL HSILGSFSQD ETSHLLNLPR TSWVPVQPST AWPPSKRVAV DPLFSSGASQ CVLPQVEQLG QPQSTMAQNA ITLPPFPSRE CAIEGSTDPQ NHLLFGVNIE PSSLLMHNGL SSLKGVSSNS GPPTIPFQSS NYLNTTGTDS SMNPGMTHNI GEAGFLQTPE NGGQGNPSIK TFVKVYKSGS FGRSLDITKF TNYHELRGEL ARMFGLEGEL EDPVRSGWQL VFVDQENDVL LLGDGPWPEF VNSVGCIKIL SPQEVQQMGN NGLELLNSVP IQRLSSGVCD DYAGHEDPRS ISTGITTVGS LNY // ID V7CPP8_PHAVU Unreviewed; 387 AA. AC V7CPP8; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW31333.1}; GN ORFNames=PHAVU_002G229800g {ECO:0000313|EMBL:ESW31333.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW31333.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW31333.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002289; ESW31333.1; -; Genomic_DNA. DR RefSeq; XP_007159339.1; XM_007159277.1. DR GeneID; 18638840; -. DR Proteomes; UP000000226; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 170 271 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 170 271 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 387 AA; 43104 MW; E592DFCA99D6EF5A CRC64; MDNFPDPVSA TTTNPLILEQ RSMGELNNVN FPVDNSGHVG FPDPYYAPFD QNMQFQQVNQ YPLHTLQTGQ PNAIYGAPNS EVQGWSQQQP EEEEYRKSVG TLTSKVARDK RKQVRQKSKS VPVAPLVPTK GIIKEQPVPG GGSDGKLTIN QDRIFAVFCS PDGKKLEEVF TKQLKNSDVS VLGRIVLPKR EVEAKLPPLT DKEGKDIMVK DVYSGMIWTL KYKYWSNNRS RMYVLENAGD LVNHYELQMG DLITIYEDER KNLYVWARKK RNPEGAVSLS KKEVEDANNL LTSINGGGSS PSGAKLGMNI AERDQLSNIA GNGAPSQTTI EATPPALPAP PALPAPFGGN NQWISDEDVY GGLDNIFEIE NSFHSFDHLK DYKTWPY // ID V7CR69_PHAVU Unreviewed; 937 AA. AC V7CR69; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_001G008200g {ECO:0000313|EMBL:ESW32677.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW32677.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW32677.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002288; ESW32677.1; -; Genomic_DNA. DR RefSeq; XP_007160683.1; XM_007160621.1. DR GeneID; 18639992; -. DR KEGG; pvu:PHAVU_001G008200g; -. DR KO; K14486; -. DR Proteomes; UP000000226; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 831 915 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 937 AA; 104047 MW; EC5FB3E26230B727 CRC64; MMASVEEKVK TGGVGVGAGA GAGGGMVVGG QTLVAEMKLL KEMQEHSGVR KNLNSELWHA CAGPLVSLPQ VGSLVFYFPQ GHSEQVAAST RRTATSQIPN YPNLPSQLLC QVQNVTLHAD KETDEIYAQM SLQPLNSERE AFPISDFGLK HSKHPTEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY TIQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK SQLRVGVRRV NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI PLAKYRKAVL GTQVSVGMRF GMMFETEESG KRRYMGTIVG ISDVDPLRWP GSKWRNIQVE WDEPGCVDKQ NRVSVWEIET PESLFIFPSL TSSLKRPLQS GFYENEWGTL LRRPFMRAPD NGTMELSNSM PNLYSDHLMK MLFKPQVINN NGALLSAMQQ ESAATRSPFQ EMKTALAVEN MPLRNLHTQS IPDQHNPLNM QSLLRNDQPE KLHTLAKIEL PSGMVTDKPK LEPEVLPDHM LDYPSMEGSN IEKMATNPVN QQGLANQLTF HNQNQTPLTQ SSPWPMQPQL ESSMPHPQMI DMTQAETAMV NGLLPQLDID EWMAYASSQP IAMPNRPTGP LSELQEHTSL QPQVVNHNHP LPNHEVWDHY VKSLKFLSQT DQLTSICQPG TYGLNGMPSP NSLRDLSAES NNQSEICVNV DVSNSVGTTV VDPSTSSTIL DEFCAMKERE FQNPNDCMVG NLSSSQDVQS QITSASLAES HAFSLRDIPD NSGGTSSSHV DFDESSFLQN NSWQQVPAPI RTYTKVQKAG SVGRSIDVTT FKNYEELIRA IECMFGLDGL LNDTKGSGWK LVYVDYESDV LLVGDDPWEE FVGCVRCIRI LSPSEVQQMS EEGMKLLNSG ALQGMNV // ID V7CRJ0_PHAVU Unreviewed; 471 AA. AC V7CRJ0; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW32802.1}; DE Flags: Fragment; GN ORFNames=PHAVU_001G018400g {ECO:0000313|EMBL:ESW32802.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW32802.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW32802.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002288; ESW32802.1; -; Genomic_DNA. DR RefSeq; XP_007160808.1; XM_007160746.1. DR GeneID; 18640096; -. DR KEGG; pvu:PHAVU_001G018400g; -. DR Proteomes; UP000000226; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 35 128 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 345 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 35 128 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 345 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT NON_TER 1 1 {ECO:0000313|EMBL:ESW32802.1}. SQ SEQUENCE 471 AA; 52577 MW; BD380C9F462316C0 CRC64; IATFSSFSVV LPMGVQNCNG CRSWEDDIYW SHFQFLHFMQ FLRAEYDQHL ALPKTFSDNL RKKLPENVTL KGPSGVAWKV AMIARGDTLY LAHGWGQFVK DHCLKENDFL VFKYNGESQF DVLVFDGGNL CEKACSYFVR KCGHTEGEHV GGSLNRRRDT TEGCVEEGHT PSNAGVKCAS PERSVHANGS KEPINVPFET PTRSEEALNA DVESGGAEQV RSVGIPLSAV PTETANGKRI RKLVSAVKHV QTKRRGRPAK VSHVMERAKI DLCALNSTSD NLAVIACVGF FSVCFKLKWV ESGEPVSAVK SGSYELFISN RRPVTEDEIK NAFALAQAER TEDGLVIVMR PSHVYKRFFV SMPNKWIGEH ISPMSQDVIL RMGKGEWIAR YSYHNIRHTG GFTGGWKHFV LDNNLEEYDV CVFKPAGQMN ETMVIDMAIF RVVQETVPLS VMSPSGKRAR KSAQNANLTE T // ID V7CRR5_PHAVU Unreviewed; 559 AA. AC V7CRR5; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW32804.1}; GN ORFNames=PHAVU_001G018500g {ECO:0000313|EMBL:ESW32804.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW32804.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW32804.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002288; ESW32803.1; -; Genomic_DNA. DR EMBL; CM002288; ESW32804.1; -; Genomic_DNA. DR RefSeq; XP_007160809.1; XM_007160747.1. DR RefSeq; XP_007160810.1; XM_007160748.1. DR GeneID; 18640097; -. DR KEGG; pvu:PHAVU_001G018500g; -. DR Proteomes; UP000000226; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 220 316 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 440 536 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 220 316 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 440 536 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 559 AA; 62521 MW; 14F63B0663AF8D7F CRC64; MGCDCGGKLN LRKPHFYEVF SSAFSSHRLK IPDGFVCRME GRTYGSLSLI GPSGNVWTVQ LLKQDNDLFF HHGWSSFVVD HSLECGDLLV FRYEGHLHFT VQVFDKDACE KEAAFISECS QSSSDFEAIT GQKRGKDLLR YEVVRPIRMF RETEETSKAC LANDALVPFH TDNRNEEAAI MYRSGKEDGS YFLGGVSLSN VSAQDEKKVA QSFTSDYPYF VRIMKSFNVS GSYTLNIPYQ FSMAHLPNCK IKIILHNLKG EHWTVNSVPT TRVHTSHTLC GGWMAFVRGN SITVGDICIF ELVHKCELRV HIAGVGNDGL DCQVGRVNAG HVGPPRYMPT NAKVNSKCIR KVDVSNKKWP KIGQETVLSI DLKKSGRASN ASKHMGLCPQ SKVAHKKLAT PRRHRVEDEL SSQAKAGLRM LFALDEQRVA QAFSSPFPSF VKIMKKFNVS GSYTLKIPYQ FSAAHLPTYK TEVILRNSRG ECWTVNSVPD AKGRTVHTFC GGWMAFVRDN DINFGDTCIF ELVTQSEMQV YISGVGKEGP DHQNGHIKLD RLANLPSTC // ID V7CRR6_PHAVU Unreviewed; 842 AA. AC V7CRR6; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_002G282200g {ECO:0000313|EMBL:ESW31960.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW31960.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW31960.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002289; ESW31960.1; -; Genomic_DNA. DR RefSeq; XP_007159966.1; XM_007159904.1. DR GeneID; 18639375; -. DR KEGG; pvu:PHAVU_002G282200g; -. DR Proteomes; UP000000226; Chromosome 2. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 159 261 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 719 801 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 159 261 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 842 AA; 93475 MW; 8C7D98828F5F43F5 CRC64; MASSEVSIKG NLVNGKGENS SGGFNNGNDV RNAGGEPQNG SSSSSARDAE TALYRELWHA CAGPLVTVPR EGERVFYFPQ GHIEQVEAST NQVAEQHMPV YDLPPKILCR VINVMLKAEP DTDEVFAQVT LLPEPNQDEN AVEKEGPPAP PPRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SKQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIL TGTMFTVYYK PRTSPAEFIV PYDQYMESLK NNYTIGMRFK MRFEGEEAPE QRFTGTIVGI EDADPKRWPN SKWRSLKVRW DETSNVPRPE RVSQWKIEPA LAPPALNPLP MPRPKRPRSN VVPSSPDSSV LTREASSKVS VDPLPASGFQ RVLQGQELST LRVNFAESNE SDTAEKSAWS SAADDEKIDV VSTSRRYGSE SWMSMGRHEP TYPDLLSGFG VHGDQSSHPS FVDQNGPVAN LSRKHFLDRE GKHNVLSPWP SLPLNLLDSN TKASAQGGDT TCQVRGNMRF SSAFGDYTVL HGHKVEHSHG NFLMPPPLST QYESPRSREL LPKPISGKPK DSDCKLFGIS LLSSPIVLDP SVSQRNVAIE PVGHMHNQQH TFENDTKSEN SRGLKPADGL LIDDHEKLSQ NSQPHLKDVQ PKSNSGSARS CTKVHKKGIA LGRSVDLTKF SAYDELIAEL DQLFEFGGEL TSPQKDWLIV YTDNEGDMML VGDDPWQEFV AMVRKIYIYP KEEIQKMSPG TLSSKNEENQ SVSEGVEAQE IKCQLNHSAS EA // ID V7CV77_PHAVU Unreviewed; 593 AA. AC V7CV77; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW32806.1}; GN ORFNames=PHAVU_001G018500g {ECO:0000313|EMBL:ESW32806.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW32806.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW32806.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002288; ESW32805.1; -; Genomic_DNA. DR EMBL; CM002288; ESW32806.1; -; Genomic_DNA. DR RefSeq; XP_007160811.1; XM_007160749.1. DR RefSeq; XP_007160812.1; XM_007160750.1. DR GeneID; 18640097; -. DR Proteomes; UP000000226; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 14 107 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 254 350 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 474 570 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 14 107 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 254 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 474 570 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 593 AA; 66279 MW; E868FBFFCCA8515F CRC64; MGCDCGGKLN LRKPHFYEVF SSAFSSHRLK IPDGFVCRME GRTYGSLSLI GPSGNVWTVQ LLKQDNDLFF HHGWSSFVVD HSLECGDLLV FRYEGHLHFT VQVFDKDACE KEAAFISECS QSSSDFEAIT GQKRGTKESS SLDIAFDGVS KKMRGCKYEN QEHEPGFVGK DLLRYEVVRP IRMFRETEET SKACLANDAL VPFHTDNRNE EAAIMYRSGK EDGSYFLGGV SLSNVSAQDE KKVAQSFTSD YPYFVRIMKS FNVSGSYTLN IPYQFSMAHL PNCKIKIILH NLKGEHWTVN SVPTTRVHTS HTLCGGWMAF VRGNSITVGD ICIFELVHKC ELRVHIAGVG NDGLDCQVGR VNAGHVGPPR YMPTNAKVNS KCIRKVDVSN KKWPKIGQET VLSIDLKKSG RASNASKHMG LCPQSKVAHK KLATPRRHRV EDELSSQAKA GLRMLFALDE QRVAQAFSSP FPSFVKIMKK FNVSGSYTLK IPYQFSAAHL PTYKTEVILR NSRGECWTVN SVPDAKGRTV HTFCGGWMAF VRDNDINFGD TCIFELVTQS EMQVYISGVG KEGPDHQNGH IKLDRLANLP STC // ID V7CXN9_PHAVU Unreviewed; 321 AA. AC V7CXN9; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW33641.1}; GN ORFNames=PHAVU_001G086800g {ECO:0000313|EMBL:ESW33641.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW33641.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW33641.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002288; ESW33641.1; -; Genomic_DNA. DR RefSeq; XP_007161647.1; XM_007161585.1. DR GeneID; 18640805; -. DR KEGG; pvu:PHAVU_001G086800g; -. DR Proteomes; UP000000226; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 141 235 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 321 AA; 35849 MW; 1055F79C1351626E CRC64; MMMDQRQREK LLHKTEACAF VAGVDAELRL VAAPGDITNT NNVNRIINST SSNVSQSHGS GRIHDTNHLG LVAAVTNLGT VHRKKRMPRQ RRSTTTSTTN PTLFMQMHHF DNPFSSKHHQ PNLPSSTPSA SSHVPSSSLH SVKPSTPPPP ARKAAETFLP ALDSKEGILM NMDDKDGTHV WNFKYRFWPN NNSRMYVLEN TGEFVSTHGL RFGDTIVVYQ HIENNNYVIQ ARKGSEEDEF MEQSSETVDD MFLSDLEVNK PGCFNINYPA VNDTGMSFIY DTTFSNDSPL DFLGGSMTNL SRIGPVETFG SVENLSLDDF Y // ID V7D176_PHAVU Unreviewed; 297 AA. AC V7D176; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESW34936.1}; GN ORFNames=PHAVU_001G193100g {ECO:0000313|EMBL:ESW34936.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW34936.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW34936.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002288; ESW34936.1; -; Genomic_DNA. DR RefSeq; XP_007162942.1; XM_007162880.1. DR GeneID; 18641908; -. DR KEGG; pvu:PHAVU_001G193100g; -. DR Proteomes; UP000000226; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 70 180 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 70 180 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 297 AA; 33180 MW; 3F0219F286378AB8 CRC64; MSINHYSPEA RLYWSEQQQA ATWLGNSHTP RFNLNDNQEE VEEEEEEVVV AAAAENGGGG AAGEEKETMF EKPLTPSDVG KLNRLVIPKQ HAEKHFPLES SSSSSSCGDS AKGVLLSFED ESGKCWRFRY SYWNSSQSYV LTKGWSRYVK DKRLHAGDVV FFHRHRTHPQ RFFITSTRRQ ANPPAHVNST ATASFYSAQP YPAHHLPFPY QPLSLHAAPG GGSQGQNQTT PGGNSSGGRV LRLFGVNMEC QPHNDSQNST PQCSYTLSST LSHHHLHRQT SYSSSPNPHH HMLRQLP // ID V7D1H2_PHAVU Unreviewed; 667 AA. AC V7D1H2; DT 19-FEB-2014, integrated into UniProtKB/TrEMBL. DT 19-FEB-2014, sequence version 1. DT 05-JUL-2017, entry version 27. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=PHAVU_001G202000g {ECO:0000313|EMBL:ESW35046.1}; OS Phaseolus vulgaris (Kidney bean) (French bean). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; OC Phaseoleae; Phaseolus. OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW35046.1, ECO:0000313|Proteomes:UP000000226}; RN [1] {ECO:0000313|EMBL:ESW35046.1, ECO:0000313|Proteomes:UP000000226} RP NUCLEOTIDE SEQUENCE. RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.; RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CM002288; ESW35046.1; -; Genomic_DNA. DR RefSeq; XP_007163052.1; XM_007162990.1. DR GeneID; 18642000; -. DR KEGG; pvu:PHAVU_001G202000g; -. DR KO; K14486; -. DR PhylomeDB; V7D1H2; -. DR Proteomes; UP000000226; Chromosome 1. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000000226}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000000226}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 568 651 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 667 AA; 74520 MW; F9C8B506AB3CC266 CRC64; MRRRREMEPE PRDGLPRNRG PGDDLYTELW RACAGYSVHV PRVGELVFYF PQGHLEQVAA FTQHQQDGHM EIPASGLPSK ILCRVVYVQL QAEIYTDEVF AQVTLVPEAK QNDFDLENED NHVPLRTATY SFSKVLTPSD TSTHGGFSIP KRHADECFRP LDMTHQTPAQ EILAKDLRGF EWHFRHIYRG QPKRHLLTSG WSTFVNAKKL VAGDSCIFVS GESGEVRVGI RRANRHPSNA SLSSSLISGH SMQLGILASA SHAVSTGSLF TVYYHPWTNP FEFIIPLEKY LKSTVPDYSI GARVQMQCDV EESLRRYAGT IIGTEVIDSI RWPGSEWRCL KVQWDAAVDA FMHPERVCPW WIEPLESATE KHFPVLPNPK RPHLLNQHPL PGLSVFGMND AGQSSARAAS QTQRTDRDLQ GQDYSGLSTS WPLQRPSSSD VINPSKFSIS GSQFGKENLN QLPFHMQDIL HKSLGRSTSL AHEDLSISSS NLGSICSDSL GWPPYESRNE NDAPFGQLGS CSRYKLFGVS LIDRQPELPS SQPSSLRSTP PMSVTSGKTC QKCRSVNRSC TKVIKLGTAL GRAVDLSRFR GYDELIAELD SMFDFGGGLV NGSSGWHVTC IDDDGDMMFL RDYPWQDFQC VVQKMIICQK DGINSLNPRS SADPPSL // ID W1NPW3_AMBTC Unreviewed; 242 AA. AC W1NPW3; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERM98946.1}; GN ORFNames=AMTR_s00114p00142630 {ECO:0000313|EMBL:ERM98946.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERM98946.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI395136; ERM98946.1; -; Genomic_DNA. DR RefSeq; XP_006836093.1; XM_006836030.2. DR EnsemblPlants; ERM98946; ERM98946; AMTR_s00114p00142630. DR GeneID; 18426971; -. DR Gramene; ERM98946; ERM98946; AMTR_s00114p00142630. DR KEGG; atr:18426971; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 109 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 9 109 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 242 AA; 27305 MW; 0024FF7DEC47CAE3 CRC64; MEEEREHMFD KPLTPSDVGK LNRLVIPKQH AEKYFPLDQT SNEKGLLLGF EDNSGKPWRF RYSYWNSSQS YVLTKGWSRF VKEKQLCAGD IVSFSRHSGK LFIAFKHRAN LSPQIPLWHR NLNNIHATSS INGADSIDNG GVGYNYNGVL WCSRPNGSLY YVRVPSHGGE MSSGNGVKRV RLFGVDLECP EVEETDSVGV TGAWPAPQLF SNVGLVPRAP LEREREQTIS FDLEQMPGSQ WG // ID W1NV06_AMBTC Unreviewed; 499 AA. AC W1NV06; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERM98499.1}; GN ORFNames=AMTR_s00072p00182810 {ECO:0000313|EMBL:ERM98499.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERM98499.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI395332; ERM98499.1; -; Genomic_DNA. DR RefSeq; XP_006833221.1; XM_006833158.2. DR EnsemblPlants; ERM98499; ERM98499; AMTR_s00072p00182810. DR GeneID; 18426513; -. DR Gramene; ERM98499; ERM98499; AMTR_s00072p00182810. DR KEGG; atr:18426513; -. DR OMA; IEHESSE; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 27 120 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 392 489 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 27 120 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 392 489 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 499 AA; 57474 MW; DBBD250195302DCF CRC64; MWGGRQACEQ CMEECYRKHG HKMPNKSSYF FKVLMDNFSE RLWIPPAFQR HIEHESSENA ILKGPNGKIR HVQLIKTIGG MLFDDGWKEF VRDCCLEMED FLVFRYDGNM QFTVQIFDST GCEKEDPFSV QNFVSERSLV EIGVTQNLVD YPVLSQLGSH KVTMRKKSRE WNVMPLKPLA YDMTDDCDRT KVEETFHHKD DGGFINIDST TDIQGHLVAF DIDIGSCVPF RTKHRSPNKG KQVGVSKSNM PKNEKLMDSH IGCSEGLNID PRTSVPFVSN NRLPDKRKFA KVSKTTISSQ KKEKPKALHI THSEKLKIKS SSPITYISKD KLPRKNASVL KTKKSPQKKK KSVGSRVRNY SNVVSARRPV TEIERQKAFA AASSFRSGKP FFTHIMKRSN VYSGFYLHIP VWFSRKYFPR RSQHVTLRNP FGAHWVAIYR YKESVSEGAL VGGWKYFSIE NNLEEGDACV FELSNEGIKE MYVHIFRVVE EIKPLKWAT // ID W1NVC5_AMBTC Unreviewed; 986 AA. AC W1NVC5; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00092p00072950 {ECO:0000313|EMBL:ERM99180.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERM99180.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI395040; ERM99180.1; -; Genomic_DNA. DR EnsemblPlants; ERM99180; ERM99180; AMTR_s00092p00072950. DR Gramene; ERM99180; ERM99180; AMTR_s00092p00072950. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 781 865 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 986 AA; 109736 MW; B55737F864568FBD CRC64; MKLSSSSFSH QSQEGEKRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDA FLPADLGTSG KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSLHGNKDD DLGMSAPLMW LRDGADRNMQ SLNFQGLGVS PWMPQRFDSS LLGMQSDVYQ AMAAAALQEM RGGIDPSKQG AASLLQFQQP LQQTQQSLQS RPNPMLQRQI MQQTQPPQSQ QTLLQAIQET QSPNHILSHQ LQHQHSFNDQ QQQNSQHNSQ QNQQQLPDQQ QTQQQQFQIP NVVSALSQLA SSSQSPSLQS ISSSLCQQSS FSDSNGNPVT TTSISPLQSI LGSFPPDESS HLNLPRTNSA TLPRDHMLPS APWLSKRISI DSSLPSGGPI VLPHVEQLAT QPNMAQHPVS LLPFPGRECS VDQEGSVGDP QSHLLFGVNI DSSSLMMQNG VSALRGLGGD TDPSAALSYA ASNFLGNPGT DFLNPGMAGS GCLNESGFLP SPENVGQINP QNFVKVCKSG SFGRSLEITR FSSYLELRSE LARMFGLEGQ LEDPLRSGWQ LIYIDRDNDV LLLGDDPWPD FVKNASCIKI LSPQELQQMG KQGIELLRTV PMQRQQSSIC DDYEKREEQF VFYVFLCLLK AACALWVWPP TQPTPTTLRF CGFKPNPHRQ PIDFVDFNYI KVKDSSETEK NSEPRPLSFL RLESYSDHAM AAPVRF // ID W1P1U6_AMBTC Unreviewed; 404 AA. AC W1P1U6; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN03807.1}; GN ORFNames=AMTR_s00078p00115450 {ECO:0000313|EMBL:ERN03807.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN03807.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394330; ERN03807.1; -; Genomic_DNA. DR RefSeq; XP_006842132.1; XM_006842069.2. DR EnsemblPlants; ERN03807; ERN03807; AMTR_s00078p00115450. DR GeneID; 18431958; -. DR Gramene; ERN03807; ERN03807; AMTR_s00078p00115450. DR KEGG; atr:18431958; -. DR OMA; CVFELAG; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 288 382 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 288 382 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 404 AA; 45899 MW; C5EBC070C6F0FE79 CRC64; MEDDRTCLKC ELHCHKQDPF QECRTRPHFL VALVGNFSNV LALPLELNAH IKEEISENAI LVSPSGKIWL VGLNKTKDCA FLQKGWSDFV KGHSLEKGEH LVLRYDGGLR FAVKIFDTNG CHRGEAVHKA IEQSINVSES KSRKILSTMK CLVKRKSSPN EEEEQEQGID TCIEGKINAC EESSKENHHE ENTLMISHSS LHKISCQDTD AQNRSIILSD KEVVPSRTNY YTPKKKYYTP KKKERMTKVG SDTSKNRYFL SNRRMVTQDE RERAVKAANL FESSSPYFIM VMKTSHVYKG FLLNIPLDFV KKHLPDEKPA MDLLDPSGKK WKVKYIVSGG FRGGLSGGWG AVSLGNNLEE GDACVFELKG DNFMVLHIFR VVEEIVPLTK YPASTSERKR KLWA // ID W1P328_AMBTC Unreviewed; 287 AA. AC W1P328; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN04247.1}; GN ORFNames=AMTR_s00077p00151100 {ECO:0000313|EMBL:ERN04247.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN04247.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394293; ERN04247.1; -; Genomic_DNA. DR RefSeq; XP_006842572.1; XM_006842509.2. DR EnsemblPlants; ERN04247; ERN04247; AMTR_s00077p00151100. DR GeneID; 18432402; -. DR Gramene; ERN04247; ERN04247; AMTR_s00077p00151100. DR KEGG; atr:18432402; -. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 220 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 220 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 287 AA; 33014 MW; 08153421FF379CF4 CRC64; MGMNSYEELR NQRLQENLKR FKDLGLQSVS LDLSEASKSE TKTIQRTVKP RSKGSDEEFM ILRRSSRASK NPVPVYHEVG TILPRYRMRF ARKSSRGGDI RYASDEERIY AFKKAEKLQS NLKSGHPSFV KPMVRSHVSS CFWLGLPSKF CRGHLPRKDS TMILEDGDGL EFETNYIASR EGLSGGWKGF AVDHKLDDGD ALVFELIEPT KFKVYIIKVS EYNNEEKEKP TGSTKKTKCE SRKKYNWTDN DNVYSFETEV TRETQSAQRA ERAAKRRCAT SLQKIIP // ID W1P3H3_AMBTC Unreviewed; 363 AA. AC W1P3H3; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN02164.1}; GN ORFNames=AMTR_s00045p00192570 {ECO:0000313|EMBL:ERN02164.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN02164.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394661; ERN02164.1; -; Genomic_DNA. DR RefSeq; XP_006840489.1; XM_006840426.2. DR EnsemblPlants; ERN02164; ERN02164; AMTR_s00045p00192570. DR Gramene; ERN02164; ERN02164; AMTR_s00045p00192570. DR KEGG; atr:18430267; -. DR OMA; WWGNSAG; -. DR OrthoDB; EOG093600ZM; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 101 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 269 363 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 7 101 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 269 363 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 363 AA; 40761 MW; 69A65C0A613D7FC5 CRC64; MASDEHKPCF FKILLGDFTE KLRIPPEFVR RNRREISAEN AVLKGPIGKL CYVKMKSTSK GLFFQDGWNE FVSDNSLQTG EFLVFRYDGD LHFSVQVFGI SGCERIYASV IKTDEEKETL DEEKETKETL DGEKETSNNA KENLLDDKDR GDDMQAKVEP PYGDSSGDGG KCFGGSSALN HVDGFTDNSV QPNANPTSLP NILAKDDEES DDCIIISDVE IMCPDVKWSG KRNIRNSLRS GSAKPKRQSL SNQNTSMASD AARSFSSSNP FFKVQMKPSS SRFAYIPANF ARLHICASRK MKLRVKGGKS WKVFVNLRKV GSCAIQTGWK DFYLGNNLKL GDICIFELLP EKDEMIVHFF RDD // ID W1P3Q7_AMBTC Unreviewed; 494 AA. AC W1P3Q7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN01595.1}; GN ORFNames=AMTR_s00002p00272200 {ECO:0000313|EMBL:ERN01595.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN01595.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394767; ERN01595.1; -; Genomic_DNA. DR RefSeq; XP_006839026.1; XM_006838963.2. DR EnsemblPlants; ERN01595; ERN01595; AMTR_s00002p00272200. DR GeneID; 18429680; -. DR Gramene; ERN01595; ERN01595; AMTR_s00002p00272200. DR KEGG; atr:18429680; -. DR OMA; FTHEANM; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 26 119 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 383 477 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 26 119 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 383 477 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 494 AA; 56141 MW; FC88D03C3587E17F CRC64; MEDYRTCSNC ELHCHKVDPF QVFKTRPRFL KEMAGDFSKE LALPQELYKH INGVASERAI LESPSGKLWL VELKKTEEGA FFQNGWKEFI KGHSVKLGES IVFRYDGNLR FDVQIFGSNG YQREDMFIAN TCKKSTSNEG EGELNEAIDA ASIKSCKSYA KRKLKFLLMN NFTPPVAKEQ DMGVDNHEQC VDVSQTRDCK DHEKRKLSSY QSKLCKKHVR PRKLTETGDS MESTPMTPTE DHLVVQNEII ACPQEETVGK PDDADESVLH RESGDPKNLT ENGDSTESTP LTLYEDLVQN QILVSPQEEN VTRTNERVLS SRTDGYTKEK KESIDVVRTH IPKQTSSPKF LRKFQSGRRV VTLDEKARAL EAANSFKTNN PRCVIAMKPS NVYHCFYLHI PRSFAKMHLP KVRLAMHLRD PTGREWEVIC ICREGNATAL SGGWAAFSIG NNLEEGDVCI FELKEEKLMA VHIFRVVEEI VPLIRCLEPI SAGN // ID W1P4A1_AMBTC Unreviewed; 222 AA. AC W1P4A1; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN02484.1}; GN ORFNames=AMTR_s00214p00019140 {ECO:0000313|EMBL:ERN02484.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN02484.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394589; ERN02484.1; -; Genomic_DNA. DR EnsemblPlants; ERN02484; ERN02484; AMTR_s00214p00019140. DR Gramene; ERN02484; ERN02484; AMTR_s00214p00019140. DR OMA; ESSCEEQ; -. DR OrthoDB; EOG093602PA; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 18 111 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 18 111 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 222 AA; 25429 MW; 4043E14B9308E381 CRC64; MLVDRGGGNG SRGSERDFYY FFKVLLGNFS EQLSIPPAFR TYLEHEVSRK VFLKGPSGDV WPVDLKKTVG GMLFQNGWKD FVNDHCLQLG HFLVFRYDGD VYFTVQIFDQ TCCEKEDAFL VHNSDEMDFN EDNAEEVKVK ENLMKQSRIA RNRSFKSKMN RTNGKVNIFP TQPVFDNGYV EAEKNDMKTK MNDIMTVGDS SDESSCEEQC SEKGPLCQQG VE // ID W1P5G3_AMBTC Unreviewed; 530 AA. AC W1P5G3; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN02165.1}; GN ORFNames=AMTR_s00045p00193040 {ECO:0000313|EMBL:ERN02165.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN02165.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394661; ERN02165.1; -; Genomic_DNA. DR EnsemblPlants; ERN02165; ERN02165; AMTR_s00045p00193040. DR Gramene; ERN02165; ERN02165; AMTR_s00045p00193040. DR OMA; EDENINM; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 85 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 410 502 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 85 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 410 502 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 530 AA; 61052 MW; 72F7ECA5E3CAF6B1 CRC64; MSIYVLQQIP HAFLKHIKKA AAGLAILRGP SGNLWHVEVN ITNDSVAFQE GWPQFVTDHS LQLGEFLVFK HDGDLQFSVS IYDRYACQKE NAYFAKPSEG VNSSIKKWKM AMENEHTLCL EYPKIGNHKS IVKDKHEMQI VFAQKKYLKN DRASVDQRFS EQQSFRNDRL CVDQSFAKEK SLKNDRVAVD QRVARPSLDI CSDFMTRNGS KQIIAKEDHI VISIKEEDNA YSPKSTAGPS ASATLKLSVS DKNEKPRRHR RKPSLQSGSD LRAGIEGQKS IREQPYILHA FKEEKNFNFP RSTPAPLAIA YDDQYSKTRI EDMQLREVPF SVDLTEKEKE FSHPRSTVLP ITPAALYIAY HDQRQHFMPN QIVTDGRESV FLVKRRHIHE EEKRFAIEAA KSFKSDNPFF TVVEPFYTYP SKVELDIPKE FRVKHLSTSR NMTLWDPKQK DWPVFYENWD TLGGLTSGWS EFALGNTLKG GDVCVFELVN DREFSIHIYP VVKDLIFVDL DPMIFACSSE RLEELKSEND // ID W1P5U2_AMBTC Unreviewed; 724 AA. AC W1P5U2; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00211p00025860 {ECO:0000313|EMBL:ERN02330.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN02330.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394641; ERN02330.1; -; Genomic_DNA. DR EnsemblPlants; ERN02330; ERN02330; AMTR_s00211p00025860. DR Gramene; ERN02330; ERN02330; AMTR_s00211p00025860. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 45 147 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 610 694 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 45 147 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 449 476 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 724 AA; 80176 MW; 1F3EE8D4D04E3197 CRC64; MDPQADKDTD EVYAQMTLQP VKSEMDLFSV PDFGQKQSKH PSEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDFTMQP PAQEIVARDL HDNLWTFRHI YRGQPKRHLL TTGWSLFVGA KRLKADVSVL FIRDEKSHLC LGVRREMRQQ TILSSSVLSV DSMHIGVLAA ASQAATYHSP FTVFYNPRAS PSEFVVPLAK VHKAVYGRHT SIGMRFGMMF ETEESGKRRY MGTITGICDI DAIQWPNSKW HNLQVEWDEP EAGDRQNRVS VWEIEIADCP FLLCPLTMSG LKRPYQADLI SSAEETEGSS MVKRSSSWFR ETDISGLQNP VNLNMNIEHL MKMLRKPRSA PMAQLGSQEL GNIEDLILHT PCFQSITGFL KSSGPQFGLN KPDASILSSL ISSDTSIHVP EIGNTVDKLQ FPCNSSADFV DATQYIESLS QELFGLADLP NVKNACQTEQ NALESQQNEL ESQLSRRGLI SLLVGTTIPS TVNSCGLGDF SEESNEQSET YSNIQFEGSN GSILIDSSIS SSGLEGFGTL RAPSEGLLGG ISSSLDLQSQ VTSTSGVDNQ SLSILGMPVN SGATSSSNVE INENSFFPRN SWRQVTPQMR TYTKVQKLGS VGRSIDVTQF KNYEELTFAI ACMFGLKGKL EDPRTSSWKL VYVDYENDVL LVGDDPWEEF VACVKCIRIL SPSEVQQMSQ EGLQLLNNSA KLATGSGDHV WDRP // ID W1P6B2_AMBTC Unreviewed; 973 AA. AC W1P6B2; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN03458.1}; GN ORFNames=AMTR_s00003p00266720 {ECO:0000313|EMBL:ERN03458.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN03458.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394358; ERN03458.1; -; Genomic_DNA. DR RefSeq; XP_006841783.1; XM_006841720.2. DR EnsemblPlants; ERN03458; ERN03458; AMTR_s00003p00266720. DR GeneID; 18431599; -. DR Gramene; ERN03458; ERN03458; AMTR_s00003p00266720. DR KEGG; atr:18431599; -. DR OMA; LACHEIG; -. DR OrthoDB; EOG093601F2; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 388 489 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 650 700 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 388 489 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 973 AA; 106487 MW; 7D8638E28A362050 CRC64; MSKICFNKDC GVADTERWRK GWRLRSGELS DLCDRCGSAY EESRFCEGFH LDVAGWRTCE TCGKRIHCGC VASVHTYILL DTGGIECMLC ARKSILFAAP NQIWPSPMFL PLPPSDRLVD RPVNAWSQIA ASNSCSGQVK QVPPLGYSAT NPSEFQCMQY LDGGIFHNID KSFPCNQSTI PIFEKKRIIE DSLERKPSHH LKNEALGEPV VGHTSIEPIS GLNTFHSEEE KPEGKPDCSR IAGGRSSVDA RKSVSETDLG NILGRNLDVS SSCISVSRQS LNAKDDISLP LLGLGVSVSS PAETMDATKV SGCETRERSL QLFPRQYLPG SCSGFQSSGD LRSPMRIARP RGEGRGKNQL LPRYYPRITD QEIQQITGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA EAYFPSISQP EGLPLRIQDA RGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LVMGFRKAAS APSEQDAQVH KQGNGISTIG ETNHGSGAAG EATSALPFRS SKGATESTNY SSNSQFHSLD PALPLSRDKE ACMSKEGSNS KSLFLSDKRK SSTLGSKSKR LRIDNEDSIE LKLTWEEAQD LLRPPPNHPP NVVIIEGHEI EEYKEPPVIG KSTIFATNKA GEKYQWVQCD NCAKWRKLPM DVLVPPRWTC ADNSWDPKRS SCSSAQELST EQTEHLLQTH AALKRIDQTT AEGSSAGLDA LADAAILRGD DPEEPTSTTA SPPTTRHPRH RPGCSCIVCI QPPSGKGPKH KPNCTCNVCM TVKRRFRTLM MRRKKRQEAE IEASRKALIS QMENVKSSDD SGERKMENSK SDEDSGGRKE NVKSGDDDSG GKIQEDLKPV EEFGGSKRSE NWRSSKEKAS SSLQGANPEY SRRGSGTLKG RIDLNCQPER EDELGHFPEG GVGLEVEANG VGPGGYEVET GRGALGTSRR EADVASGSGS GSG // ID W1P932_AMBTC Unreviewed; 874 AA. AC W1P932; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN04159.1}; GN ORFNames=AMTR_s00077p00082680 {ECO:0000313|EMBL:ERN04159.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN04159.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394293; ERN04159.1; -; Genomic_DNA. DR EnsemblPlants; ERN04159; ERN04159; AMTR_s00077p00082680. DR Gramene; ERN04159; ERN04159; AMTR_s00077p00082680. DR OMA; MFHSKDS; -. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.50.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR InterPro; IPR013088; Znf_NHR/GATA. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 323 424 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 578 628 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 323 424 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 874 AA; 95917 MW; 008E67A0022E5A49 CRC64; MNLTCGTTTT SKWREGWTLR SGGVADLCDT CGSAYEQRIF CDIFHSKETG WRECRYCNKH VHCGCIVSKS SIEMLDSGGV SCIKCSKSPT LPSIDSQVQQ MPMLQSTQGV LSLPARTSKV AQTNDSMKEE GLLPLPAQSD NTNGSLGKIK GEQGTSGGDS RSMSLKVTSE VPVSSPQLTK RDSHTDVLSD RERETGDSLN ACLSISLGAC NTGDIVEANS MPGTPNLAFP VPNVTVDGKE LNRATPSYQQ GQRSRHLLPK PPHTSFNNGS DSSKDTVPHI RIARPPGDGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL KIQDAKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI DPERKLVMGF RKATSTTSMQ ETHISPSTNC VVSQETYVSG VIENLSSIGG YSDLLHSIKG NVDPLNTLTE QLNSSDTDWY KTEKHGSRST VQVLEKKRTR NIGSKSKRLL IDHEEALELK VTWEEAQDLL RPPPSVRPNF VMIEDYEFEE YEEPPVFGKR TVFTARQSGG YDQWAQCDNC YRWRKLPFDA LIPPRWTCTD NAWDPRRCLC SAPEEVNIEE LEGLLRQRID SKRRKVTEAR KPQREISGLD ALATVAALGQ DEGSAAGPSV APTTKHPRHR PGCTCIVCIQ PPSGKGPKHK PTCTCNVCMT VKRRFKTLMM RRKKRQSERE AETARKKQSG LDGDCGGPEG NRGGPEVESG GLEGEHGGPE ELEGVGSVGG ILGKEVGKGS IDLNCQPERE EEGLGVAGSS RVSMLRLLRE ANLPLETYLK QQGLTSLASE GEAQNGNFAE GLYISDHQAM SDAG // ID W1PBW2_AMBTC Unreviewed; 387 AA. AC W1PBW2; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN05438.1}; GN ORFNames=AMTR_s00007p00238950 {ECO:0000313|EMBL:ERN05438.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN05438.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394011; ERN05438.1; -; Genomic_DNA. DR EnsemblPlants; ERN05438; ERN05438; AMTR_s00007p00238950. DR Gramene; ERN05438; ERN05438; AMTR_s00007p00238950. DR OMA; KHTYLEE; -. DR OrthoDB; EOG09360IAF; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 67 122 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 200 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 67 122 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 200 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 387 AA; 42364 MW; 74218EE5185A8DD7 CRC64; MAESSANSTE QLAGIVIDSD DASKSPPPDD GASGLQRMGS GMSTVVDCEA GLGCIVEAES RKLPSSRYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEAE AARAYDTAAL KFRGRDAVTN FKSPRTSNHS HGNIGDDEEA EALFLATHSK GEIVDMLRKH TYHDELRQSK RYCRAMPVSR ASATMPAEGR AVAAAREQLF EKAVTPSDVG KLNRLVIPKQ HAERHFPLDI ASSAAGGAGC KGVLLSFEDS TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLKAGDMVR FERGVGGEQQ LYIDWRPRPA AAPLLPPQFI VWQPAAAAPS PLAAVVHQPN VVRLFGVNLM TPPVAAPPQQ VGFCLMKRGR EMEFFTCDAK KQCIGTL // ID W1PD69_AMBTC Unreviewed; 930 AA. AC W1PD69; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00007p00267580 {ECO:0000313|EMBL:ERN05571.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN05571.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI394011; ERN05571.1; -; Genomic_DNA. DR EnsemblPlants; ERN05571; ERN05571; AMTR_s00007p00267580. DR Gramene; ERN05571; ERN05571; AMTR_s00007p00267580. DR OMA; CMEGDVQ; -. DR OrthoDB; EOG093602IX; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 842 927 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 107 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 930 AA; 104541 MW; 38CCF33DC11BFE65 CRC64; MLVPAHSCLY LQLAVLWYIS HKDTVNRYII TTVTASMQKG MDGQIPNYPN LPSKLVCLLH NVTLHADTET DEVYAQMTLQ PVNKNDKDML LASDFGLKQS KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAR DLHDNVWKFR HIYRGQPKRH LLTTGWSVFV SAKRLFAGDS VIFIRDEKSQ LCLGVRRANR QLPTLSSSVL SSDSMHIGIL AAAAHAAANN SPFSIFYNPR ASPSEFVIPL SKYNKAIYGT QVSPGMRFRM MFETEDSGVR RYMGTITGIS DLDPIRWKGS PWRNLQVGWD ESIAGERQNR VSVWEIEPVA TPFYICPPPF FRPQNPGQPG MQDDIETENV FKRAMPWLND DISVKDFQNI LPGYSLFQWM SMRQNPQLGA QASQADYLST TPPRVRNLNI DDPSKQLNFQ THFQPPHTLQ FNLPKVPQLT QQHTGHLQQQ QQPAPMNLQT QVHPQVVTNQ PHKEQSSVVN QPLGHNQIHN QILQQNFIQN QQSHLQSHQN ISQSALYQHQ LLQPQVEQQH NNNLQQQQVQ QLHMLQKLQQ QQQEQLIPQF RSSLSQNQSP QSQLSENQQH QASQQQLNSN QFSQSLHNHD QNKRQQLIQS ADISAQLQPL LSQIQARAHS GHTDGDPSSC STSPSTNNCS ASSGFLIKTQ ELTQAVTNTV QDQQLNGQIK NGPRGSNHLE ELSSTANYGL DGGFHQSSPM PSFHQSAYLG SQDSDLAFDP RNNLLFGVSI DGTLAPDSLL SRGIASGKDL QSMISGYESP KDMETDISTA ISSQSFGVPD ISFTPGCSSD ARLSDGAMAN RGPWPPHQLC MRTYTKVQKR GSVGRLIDVT RYKGYDELRR GLACMFGMEG QLEDPHQSGW KLVYVDKENE TLLVGDDPWV LYEARTQLVL DLTLFPPPTY // ID W1PEJ1_AMBTC Unreviewed; 727 AA. AC W1PEJ1; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00148p00046020 {ECO:0000313|EMBL:ERN08367.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN08367.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI393463; ERN08367.1; -; Genomic_DNA. DR RefSeq; XP_006846786.1; XM_006846723.2. DR EnsemblPlants; ERN08367; ERN08367; AMTR_s00148p00046020. DR GeneID; 18995790; -. DR Gramene; ERN08367; ERN08367; AMTR_s00148p00046020. DR KEGG; atr:18995790; -. DR OMA; RNDNISC; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 641 721 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 727 AA; 80411 MW; 64CDF10361CD00E7 CRC64; MMGRDSLKDL SAPLREAEKC LDSQLWHACA GGMVQMPPVN SKVFYFPQGH AEHAQGPVDF SKTALRFPPL ILCRITSIKF MADPETDEVY AKIHLVPLRS DDFDGMDENN SGVFSNCSGC EVSEKPSSFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SAHPPIQTVL AKDVHGNTWK FRHIYRGTPR RHLLTTGWST FVNEKKLVAG DSIVFLRTAN GELCMGIRRA TRGISGGESQ GWSPIPGSCV SHYGLSRLEA KILGVGGSEG FSMFMREEEG RLMRSSSGGI KGGNSNSDGF LRGRNKVSVE AVVEAAALAA SGQPFEVVYY PRAGTPEFCV KAGAVKSALR MQWVPGMRFK MAFETEDSSR ISWFMGTISI VQVADPVHWP NSPWRLLQVT WDEQDLLQNV KRVNPWLVEV VSTIPSVQLT AFSPAKKKLR LSPHLDFPID STFHPLSSNI DPTFASLSSN LNPTPLTSSM PRPTNPFQGL PDYHVPAGIQ GARQSQFGVA LSNLHLNRPN STLFLDVLRR PEHVSTELII GSSSTQDNVS CLLTVGSPSL NYKKSENHKP TPFLLFGKTI HMEPQVSAVE STDGHEEVGS PALTVNSSPE QIRERSELFL EKNELSLDNK REGGKWVEEG NGHCKVFMES EELGRSLDLS AFGSYEELYR KLATWFGIER SETLNHMLYR DESGTVKQTG DEPYSEFMRT ARRLTILSDS SSDNMGR // ID W1PGL1_AMBTC Unreviewed; 838 AA. AC W1PGL1; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00016p00168950 {ECO:0000313|EMBL:ERN06215.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN06215.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI393908; ERN06215.1; -; Genomic_DNA. DR EnsemblPlants; ERN06215; ERN06215; AMTR_s00016p00168950. DR Gramene; ERN06215; ERN06215; AMTR_s00016p00168950. DR OMA; HRSEERE; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010227; P:floral organ abscission; IEA:EnsemblPlants. DR GO; GO:0010047; P:fruit dehiscence; IEA:EnsemblPlants. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0008285; P:negative regulation of cell proliferation; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0048481; P:plant ovule development; IEA:EnsemblPlants. DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants. DR GO; GO:1903288; P:positive regulation of potassium ion import; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 703 787 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 838 AA; 92618 MW; B543AF8A711C1B74 CRC64; MASCDVPLKG SSGNGGSERF SSPCGNVGMT RSEDALYTEL WHACAGPLVT VPHTGERVFY FPQGHIEQVE ASTNQVADQQ MPVYKDLPWK ILCRVINVKL KAEPDTDEVF AQVTLVPEAK QDDSSLEKEP VQPPPARAHV HSFCKTLTAS DTSTHGGFSV LKRHADECLP PLDMGRQPPT QELIAKDLHG IEWRFRHIFR GQPRRHLLQS GWSVFVGSKK LVAGDAFIFL RGENGELRVG VRRAMKQQSN VPSSVISSHS MHLGVLATAM HAISTGTMFT VYYKPRISPS EFIVPCNQYL EALKQNYSIG MRFKMRFEGE EAPEQRFTGT VVGIGDVDPD KWPGSKWRCL KVRWDETASV PRPERVSPWK IEPALAPAAL NPLPVPRPKR PRGNMVAPST DVSPLPREGS SNPVDSSQPY IFPRASQVHE AMNRHSFTDT GDSDAPQKLN SWGPSVLDDD KSEPASQKRL GSENWMPHFM HEPPSYATPH GFGSEDPNLL KKHMIQDYEG KVNLKANPWP MILKDTSPNL KMSSQINEIP YQKTGNPRYG GLGGYPPVHN LGSNSPSGNW LMSLMPSSNG IDGGAKKPQF EPSNGKIAAN GGARPSDGNC KLFGIDLFNH SVAPEQALGQ TKAREEAEVH SGPSFYRSSQ QASEADQISE PSKCSKSGDG YCGGSEQEKP SQYCNHHNPS KETQCKAQSG AVRSCTKVHK QGSALGRSVD LTKFKGYDEL TLELDQMFDF GGELMSPNKA WLVVYTDNEG DLMLVGDDPW PEFCNMVRKI FIYTREEVQK MNPGSLNHHR SEEREEPSSP HGEVVVGSKE TKHQQTSPSV PTPDRDYC // ID W1PJ02_AMBTC Unreviewed; 338 AA. AC W1PJ02; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 25. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00155p00067370 {ECO:0000313|EMBL:ERN07684.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN07684.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI393623; ERN07684.1; -; Genomic_DNA. DR EnsemblPlants; ERN07684; ERN07684; AMTR_s00155p00067370. DR Gramene; ERN07684; ERN07684; AMTR_s00155p00067370. DR OMA; FMRRTAN; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 106 208 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 106 208 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 37140 MW; 85885171E47B8588 CRC64; MDPSLGTEVP TKLWRAFAGK TAKVPPLNSL VYYFPQGHAA HASSPPNFSS NTPHSVPCWV SDVQLLGSQH TDEVFAVLKL IPVPFSISEN PTPTDFFARA VETDSHAKVL TPSDANNGGG FSVPNACAES VFPRLDKSVE KPAQDLSMRD VHGETWKFRH IYRGSPKRHL LTTGWSAFVN AKMLASEDTV VFARGDDGVV CVALRRRMTA EGQNRLFWLP PEDVVRAAEL VASGDQFEVV YYPNRGPAFC VEIHTVDRAL NFPWVRGVKI RMTVEGVKGF VNGSVLSALA ADRVRWPDSP WELLEIQLNI GTARKKLVGE RGPEKELPLR GTPAQSTG // ID W1PJ85_AMBTC Unreviewed; 807 AA. AC W1PJ85; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00155p00082980 {ECO:0000313|EMBL:ERN07701.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN07701.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI393623; ERN07701.1; -; Genomic_DNA. DR EnsemblPlants; ERN07701; ERN07701; AMTR_s00155p00082980. DR Gramene; ERN07701; ERN07701; AMTR_s00155p00082980. DR OMA; NDHEYRE; -. DR OrthoDB; EOG093603PN; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 147 249 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 700 780 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 147 249 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 807 AA; 88033 MW; CC3B9A757F6D65F6 CRC64; MFGAELNVKI GGLATRPGIR CPFDFHVSGS TMAITLDSSK NGEKCLDSQL WHACAGGMVQ MHKVNTKVYY FPQGHAEHAC NPVDFPPTVP PYLLCRVTAV KFLADPETDE VFARIRLDPI KNEGYEDDCE GFADSNGMDC AEKPSSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSM DPPVQTVLAK DVHGTIWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFLRSANGE LCVGVRRSSR GIGGESSAWC PAGFSVFLRE DENKLMKSAN GGGYGGNGNG GVWRNRGKVS AKEVLEAASL AAAGRSFEVV YYPRVSTPEF CVRSSSVNCA MRVQWSTGMR FKMAFETEDS SRISWFMGTI SGVQVADPVN WPNSPWRVLQ VSWDEPDLLQ NVKRVNPWLV EVVSNIPTLQ ISPFSLPKKK HRISHPDFSS LDGTHCSLVG PTPTLPPNLL GLVNPPWQQH VDSVPSAGIQ GARHGRFGIS LPNLCPNSST NANNDIKPHH LQQQGVVLFP DGFWGGAPPP PPVSTELNIG NGSLSSIDRS SIFNEVPASL LTNNSPNRFK RSITTVTMNE NNSSSPSKGS VSGTHFMLFG KSICMDQQQA SGLSSTTDNG SPVRTSNSSS NGNPESFTVA GSVAKAEGPN FCDNFGLRLS SGMVPPVFGA PQGLFWCKDQ MTKLSLEKGG GCENGFDDGM GHCKVFMESE DVGRTLDLSL FGSYEELYKK LAAMFMVEER EMEGRVLYRD ANGAVRHTGD EPYSNFMKTA RRLTILSDSG SDNMGRQMKL NQSKPLIWLH LLGKMGL // ID W1PJC4_AMBTC Unreviewed; 223 AA. AC W1PJC4; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN08103.1}; GN ORFNames=AMTR_s00018p00040300 {ECO:0000313|EMBL:ERN08103.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN08103.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI393569; ERN08103.1; -; Genomic_DNA. DR RefSeq; XP_011624188.1; XM_011625886.1. DR EnsemblPlants; ERN08103; ERN08103; AMTR_s00018p00040300. DR GeneID; 18436343; -. DR Gramene; ERN08103; ERN08103; AMTR_s00018p00040300. DR KEGG; atr:18436343; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 123 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 123 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 223 AA; 24552 MW; 717CBEFCA82014AE CRC64; MDLEDESRLS LDREHMFDKV VTPSDVGKLN RLVIPKQHAE KHFPLGQAAS DKGLLLSFED NTTGKPWSFR YSYWNSSQSY VMTKGWSRFV KDKHLDAGDV VSFLRGTGPH GRDRLYIACA RRPPAAPPML PVVAAHAPPP VFWPSAAYVS PQMLYLRAGV QALEPVVRAQ ERKRVRLFGV NLECPQAPEG ESGGGSDRTV LARWSAVAAA AEVVQGPRPV PGP // ID W1PLH7_AMBTC Unreviewed; 604 AA. AC W1PLH7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 26. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00017p00182820 {ECO:0000313|EMBL:ERN08619.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN08619.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI393256; ERN08619.1; -; Genomic_DNA. DR EnsemblPlants; ERN08619; ERN08619; AMTR_s00017p00182820. DR Gramene; ERN08619; ERN08619; AMTR_s00017p00182820. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 108 210 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 108 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 604 AA; 67474 MW; B4520A4056A5BF54 CRC64; MDSSSGTLVP ANLWRTFAGN TAKVPSPNSL VYYFPQGHAA QASSPPNFPN GPHFPPCIPC LVYDVRLFAS HQTDEVFAVL SLVPDTFSIR EKPATTDFFA DLAEIDSHAK VLTPSDSNNG GSFSVLSQMA ESVFPKLDKS IKNPEQDLVM QDVHGKAWKF RHIYRGRPKR HLLTTGWSKF VDEKRLASGD TVVFARGNDG MMSVGLRRRA EVSQFRTHWL PPEDVVRAAE HAASGHPFQV VYYPNRGSAF CVERHIVDMA LELSWVPDVT IRMTVEGVKG LVTGSVLSVS VVDPDRWPGS PWGLLEVASD RSSTRRVNPW SVESMKVLSP LLYNEQDKPS TVAENEKFES LLGPQLSTYK EHEMGLHIDK RQFKSNSSTT TIQEARQDPI IKALSSDSLD NQTCNKSTFC DNHSNQQNSF GMPLMLPTLE CFSPQGYSNY QSQSDGNLPK KCDTELPGSG SNDVAIKSNI FKPSEKSRSM VQPQETSNDK PEKEANVRLC KVFYNDIIGR SIDLSLFCSY EEFFGRLSHM FGKEISPLHS LLFYDRPDGI QRSVGEEPYN ISLWEGLLKF FYEMLDVLGE VEGYASIMWH GVKNNGLEND STGI // ID W1PMU7_AMBTC Unreviewed; 563 AA. AC W1PMU7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN09378.1}; GN ORFNames=AMTR_s00029p00026560 {ECO:0000313|EMBL:ERN09378.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN09378.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392980; ERN09378.1; -; Genomic_DNA. DR EnsemblPlants; ERN09378; ERN09378; AMTR_s00029p00026560. DR Gramene; ERN09378; ERN09378; AMTR_s00029p00026560. DR OrthoDB; EOG09360NNM; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 376 476 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 376 476 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 563 AA; 62355 MW; 89E5A771392CAE5E CRC64; MRRTAKPEII HESTKEAGRN REGDGSVSGS PVQVSRSDSK ISVPVSSSTS PGGIGTSEVE NGHEFSGWIS GEIAGSRSMS DTQIKHQLFG PTGSVLPVDS FVNLEQSVRV GGRETIDFKQ VFQVNQRFTF PASSVQPQPG YFHGSETCFS QKVDLNSMFA PSNSFDINGE RLWRSDATGS SYSVPCNSYD NALISSNAPS NLKRMIDIST DQYLLPTSIC PNPVYQASSR PNSPITYQHL FPVSTRDSCN SNACCKHGEE FGNHAFSSSG YSRASEVPEY DGSTDNDVFA SRKRKVVPQR RLNMKLGVNL DGNKNAYFGH DHNGLQLPKH GELGAFETNP CLHQLGRPSS SRHKVAAENL AKDDKELEVK GLMLALRKEL RNSDVGNLGR IVLPKKDAEA NLPLLTEREG QILHMEDMDS SAVWKFKFRY WPNNKSRMYV MENTGDFVKT HCLGTGDFFI IYKDEAREKY MVRGKKGAAQ IESLGSVLSN CESQDFSDKE REISTGFSGE QTKAMAPYHL MSKPKSECLP ASFSMDFERE ANGLSFDPLL LDLNPDMSFN RHP // ID W1PQ79_AMBTC Unreviewed; 372 AA. AC W1PQ79; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN09876.1}; GN ORFNames=AMTR_s00013p00108490 {ECO:0000313|EMBL:ERN09876.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN09876.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392979; ERN09876.1; -; Genomic_DNA. DR EnsemblPlants; ERN09876; ERN09876; AMTR_s00013p00108490. DR Gramene; ERN09876; ERN09876; AMTR_s00013p00108490. DR OrthoDB; EOG09360HMO; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 205 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 205 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 40835 MW; ED98F59612BFDA5C CRC64; MAYDSAAIKL RNGDSHRNMN CFSLAKDEAK FQELYSVEAV LNMIRDGTYQ AKLFAFVKGV GSSGNAETQT ETGVSNDQHM GDGGVVYQLM FQKELTPSDV GKLNRLVIPK KHAVKFFPAV SESGEIEDEN SGVDVQLTFM DRGHKTWTFR YCYWKSSQSF VFTRGWNRFV KEKCLKEKDV VVFYRCGSGE RQEGGVTEFW MIDVQQNKGE GGSSNVEGSN LGGVVVSGSE GGEMSDKKEG SEGGEISEKK DGVGEMSPVE VEREITENMS VNEGGSGSST GKMNENNGGV DLNGTKISEK KGRRNRSEKM GRGRGYKRNG GEIIHNQSVI IGKEIIQLKG GSTGEEIRRE PGGEEMGERK GKRVKLFGVC IS // ID W1PQ90_AMBTC Unreviewed; 764 AA. AC W1PQ90; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00034p00110140 {ECO:0000313|EMBL:ERN12182.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN12182.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392616; ERN12182.1; -; Genomic_DNA. DR RefSeq; XP_006850601.1; XM_006850538.2. DR EnsemblPlants; ERN12182; ERN12182; AMTR_s00034p00110140. DR GeneID; 18440391; -. DR Gramene; ERN12182; ERN12182; AMTR_s00034p00110140. DR KEGG; atr:18440391; -. DR OMA; CVESENG; -. DR OrthoDB; EOG093602BR; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 133 235 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 631 714 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 133 235 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 764 AA; 85489 MW; 1C8047110319E4DB CRC64; MEIDLNCVES ENGCCPSSIC LVLWHACAGP LTSLPKKGNV VVYFPQGHIE QALTASHLDE QQVQIPSFHL PPQVFCRVLN VNLHAEPETD EVYAQVTLVP EPEPETESEP AEKSLVEEEE GINLLHKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYSQQRPS QELVAKDLHG IEWKFRHIYR GQPRRHLLTT GWSLFVNQRN LVSGDAVLFL RGDDGELRLG IRRASHPRSI IPTHSVLSGQ WGSQLSVLSA AANAISSKSM FHIFYNPRAS PSEFVIPYRK YVRCINRPVC VGMRFKMRFE MEDAAERRCS GVITGIGDID PLRWPDSKWR CLMVRWDEDI GDEHRVRVSP WEIEPSVLPP ALNVPRLKKL RPSLPSGAAD VVAVSTGGGL LEVRESVRSR KVLQGQEDAG SKTYYYANLR MGPGSHDPTV LGSARMGTNA LTGRASDNIS IGFGEFHKVL QGQEIFPLKA QCDVPVSGNR SRENNGLRLE FFTGYQRPET VRTEVIDNST HYQSNLRFYG ASNAYFRSNQ LPYDVHNLPI INGLYERQNS WKPELVGSSQ QTMQVTEGSH SSQEDEVLNH LLPSASVRKM NYQDETLART NCKLFGYSLT EDNFLSNASK RSCTKVHKHG SAVGRSIDLS KLNGYSDLMS ELEQIFNMEG LLHDPEKGWR VVYTDNENDM VLVGDDPWQE FCDVVCKILI CTQDDVENMS PSMLVNDDAQ SCWEEAPVVI ELSKSCSSLG PPQDSSPTIT RGLE // ID W1PR70_AMBTC Unreviewed; 1181 AA. AC W1PR70; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00025p00198750 {ECO:0000313|EMBL:ERN12537.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN12537.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392614; ERN12537.1; -; Genomic_DNA. DR EnsemblPlants; ERN12537; ERN12537; AMTR_s00025p00198750. DR Gramene; ERN12537; ERN12537; AMTR_s00025p00198750. DR OMA; CKINTEN; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1048 1132 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1181 AA; 130482 MW; 31FAC19E64BF057A CRC64; MKSQANGVVN NPGDGERRSI NPELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD TDSHIPNYPN LPSKLICLLH NVTLHADAET DEVYAQMTLQ PVNTYDKEAL FASDLAMKPN KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM TPPAQELTAR DLHDHTWTFR HIYRGQPKRH LLTTGWSVFV SSKRLFAGDS VLFIRDEKQQ LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHAAANH SPFTVFYNPR ASPSEFVIPL AKYNKAIYGT QVSLGMRFRM MFETEESGTR RYMGTITGIS DLDAVRWKNS QWRNLQVGWD ESTAGERRNR VSIWEIEPVA APFFIYPLPS SEPNVRDSQE CQVEIHDESD IESILKRTMP WLGDEICIKD PQAHSPPVIP GLSLVQWMSM QQQQQQQNAL LSGPGVQPDY LRNPMATAQP ILQNYAASDL SRLQSQILQQ QNNLPFNVPK LQQTQQLPDL KPPMSWPSNQ LAQTVVGEVN QHSQPQPLSQ SLPLPPQQQQ QKQQNCVISN STFTQNQVQN PLLQSQNMGQ AQNPIQNQLL QSQSMASFCW PKAWFKALYS SQGLFKTPHF NNNSSNSSSS SSSSSSSSNT ATAAAAAAAA ATQQQQQQQQ QQQQRPPPQQ PQQSVVQNHQ QPNLQPSEHQ LQMQMLQNQQ PELQEQQRQQ LLLEAQQQLS QQLMQQSIPS NQTQPHQQLH GVNTLLFHQQ HIPKSSPQTG IQFSPHSMQQ KLPQQQQVLL LENPASCLSA STNHHSAPSN GLVANTRAAQ SGVTDEAPSC STSPSTNNCS VMTQPILSRN NRSGPKVEDI VQSAATVISP GTLEAMGSNG ASTAKELTQQ KPDFQIKPSV SLPKTPSQAA LQTYLNAAQM DYLDTSSSAT SICLSQTEGP TLQQNFPLSS FNPSQLMFRE DGEMQADPRN NVLFGVNIDS PLNIPTTPDP LLVRSLVNGK VFQNQIPNGN ASTSYGTQGE IQQEVSTSMV SQSFGVPNLP FNGGMDPSMS DGSFMNRSSW PTQFPRMRTY TKVYKRGAVG RSIDITRYKG YEELRHDLAL MFGIEGQLED PLRTGWKLVY VDNEGDILLV GDDPWDEFVS YVQSIRILSP AEVQQMSLDG DLGNGVLQNQ ACSSSDGGNA WRGGQCDQNS ANPSAGSFEH S // ID W1PRQ5_AMBTC Unreviewed; 226 AA. AC W1PRQ5; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN12682.1}; GN ORFNames=AMTR_s00025p00247140 {ECO:0000313|EMBL:ERN12682.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN12682.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392614; ERN12682.1; -; Genomic_DNA. DR EnsemblPlants; ERN12682; ERN12682; AMTR_s00025p00247140. DR Gramene; ERN12682; ERN12682; AMTR_s00025p00247140. DR OMA; TGCERED; -. DR OrthoDB; EOG09360DY0; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 16 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 16 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 226 AA; 26058 MW; 425FE10787842B71 CRC64; MYQEDRFCVH DEEDGGQSFF KIMLGNFSKQ LFIPPAFRHN FKKIFHEAVL EGPSGNNWNV EVEEVRGALC FSRGWKKFVK DHSLNDGDFL VFYYDGDTHF LIKIFNKTGC EREDAFDVEC FEKHSPVEKN MPDCPLAIVE ASENPLCIAE KQWSPKKWHR TYTSTTSPVT EKQKEEAIQK AQSFRTNCPH FVVPMRCSLV STTFMVVCAL ITQTSMESNG ATESRR // ID W1PTF8_AMBTC Unreviewed; 494 AA. AC W1PTF8; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN10991.1}; GN ORFNames=AMTR_s00160p00070370 {ECO:0000313|EMBL:ERN10991.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN10991.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392724; ERN10991.1; -; Genomic_DNA. DR EnsemblPlants; ERN10991; ERN10991; AMTR_s00160p00070370. DR Gramene; ERN10991; ERN10991; AMTR_s00160p00070370. DR OrthoDB; EOG09360KLM; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 243 344 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 243 344 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 494 AA; 54036 MW; 4FBE07DBD7D5584A CRC64; MEREEDVMGF QANQEAYMAT NSLQEEGNTF QIDPYSSSIS ASNNAGGGGG GFQSINQDFS PTSHNVGGGG GGGFRSINQD FSPATTHQYN TYISPDSMHF PCFSPPPLDP CSSSSMPLYD AFPYPDLALN QPHMSHGNSP MVIGRDYTGG LLSMAMADPI QGWAASITRA ARSKRRIARR MSFASKFSNF GRSPSSSSSS SSSGVYWPSP SSSGGRTGRM ACVYLQGPNV LTQFENKRLK FVLQKELRNS DVSSLGRIVL PKRDAEAHLP YLTVKEGIQF KVTDLVSANE WHMRYRYWPN NKSRMYVLEN TGEFVKVHDL RCGDFVILYQ DENNETFIYP RKARPVTASS ESVRPHSIRP QSPVARADGE ATRPGRGRGR ARARGSGEAS ATTATTTGEP KEVNDLGTGV VGGFFEEDDP YGFGIEPTTL ILDDDYDFSS LERLPSFDEC DLSLYESLLD MFQDDPKGGD APGGVKEGTK REDMAQDSSR EGAQ // ID W1PU77_AMBTC Unreviewed; 661 AA. AC W1PU77; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ERN13587.1}; GN ORFNames=AMTR_s00049p00034730 {ECO:0000313|EMBL:ERN13587.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN13587.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392567; ERN13587.1; -; Genomic_DNA. DR RefSeq; XP_006852120.1; XM_006852058.1. DR EnsemblPlants; ERN13587; ERN13587; AMTR_s00049p00034730. DR GeneID; 18441831; -. DR Gramene; ERN13587; ERN13587; AMTR_s00049p00034730. DR KEGG; atr:18441831; -. DR OMA; WLTSNRE; -. DR OrthoDB; EOG0936067A; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005829; C:cytosol; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0001076; F:transcription factor activity, RNA polymerase II transcription factor binding; IEA:EnsemblPlants. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants. DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants. DR GO; GO:0009657; P:plastid organization; IEA:EnsemblPlants. DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0009737; P:response to abscisic acid; IEA:EnsemblPlants. DR GO; GO:0009733; P:response to auxin; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 513 615 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 513 615 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 661 AA; 72704 MW; 252AA18B32E57CBA CRC64; MSNGHLQEEE GEERSSPAPE EETPPPQIKT DDMIEKEDLQ VDIVAESYGE FLPLEVDDPT PAIFYGVFPS LDEFPCFSAS SSHSSNSSCS SSSSSSATPW LQQNEEKPAT AKASGESSSA FLDPVPEDKM EILAELEDME LLDTPDLWDP PSSPFFSEPT TYNGGSGDFS GGSQVSPTND EDSPSDELAK VFFEWLKSNK ESISPEELRS IKLRRSTIES AARRLGGGRE GMMQLLKLIL AWVQNHHLQR RRNAESLSLQ NQPHPLSLSN PPRCNPSLSN PHLSNPSLPN PSPSTPPLSN AWVASAPNYV DPCMNAYPLP SQLGCPDLGF SHGGPDNMLL GDGVYGGNRF SGCQVNFQGE RGHFPVDPGH FPVDHSNFPA MWAAHHSILG LNPGGSFLGF SNPAMVHGDC TMASATKEAR KKRMARQRRF LSHHHHSHGH HGRHNGEHGR GMQVNEEGLV SNGGEKRGVW SSSSVMEGGV SDHVLVHGQG FNRHVASERR QGWKPEKNLK FLLQKVLKQS DVGNLGRIVL PKKEAETHLP ELEARDGITI VMEDIGTSRV WNMRYRFWPN NKSRMYLLEN TGDFVRSNGL QEGDFIVIYS DTKCGKYMIR GVKVPRQESK AETKMPMIKV QKTLHASSIK PPPPSSSTHG DDASSLLEAV T // ID W1Q0G9_AMBTC Unreviewed; 825 AA. AC W1Q0G9; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00021p00200760 {ECO:0000313|EMBL:ERN14029.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN14029.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392560; ERN14029.1; -; Genomic_DNA. DR EnsemblPlants; ERN14029; ERN14029; AMTR_s00021p00200760. DR Gramene; ERN14029; ERN14029; AMTR_s00021p00200760. DR OMA; THDEVEK; -. DR OrthoDB; EOG093606E3; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:EnsemblPlants. DR GO; GO:0010158; P:abaxial cell fate specification; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010582; P:floral meristem determinacy; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 702 785 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 825 AA; 90952 MW; 727E16AAE418A470 CRC64; MGIDLNRRVT AEGHAPRAEE GAAGTVCLEV WQACAGSLIS LPRKGSVVVY FAQGHLEQAG ASCDGWGLPP QVFCRVINVN LHADQVSDEV YAQVSLTPIP EPVEKGLPEE EVREDGEEEF EFVSRSATPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGF EWKFRHIYRG QPRRHLLTTG WSVFVNQKKL VAGDAVLFLR GESGELRLGI RRAGRPRGGS VPSLALLSQN LSGSTFAAVS KAVSTKSVFH VSYNPRASPA EFIVPYWKYY KNFNQQFSLG MRFKMKIETE DAAERRCTGL ISGVGDIDPV RWPGSKWRCL MVRWDEDSGN DRLDRVSPWE IDLLGSVPVF SPPATGLKRP RISLPSIQTG CSPPDGSTFS DFGESVRFHK VLQGQEKSGF SKPYDSSSHQ LLESRRFIPS INSPMSSEFV RGAIQTPLGV GPFISSSNSI GFEESDRFHK VLQGQEIFHL KSQNNRERNS ELSVGTLEGY PIPITGERWS VLPLQGHPAQ FPLSPSTPRF PTPSLLRFHG SGSHLLHPPL VPQDINNTLR IAEQPSGNFS LLACGEVSKG PLNESPCDSL KKKSQAPDVC APPTDAFRVD IKDGKDGATN ARNSCCRLFG FSLTEEPPLS NEAMDPAHVS LSSNDDFNSK SSFQPSTWTV SCETQQKQSE SKSQCLNKTA NRSCTKVHKQ GSMVGRAINL SKFEGYDDLI SELERLFNME GLLNDPKKGW QVVYTDSDDD MMLILIYTHD EVEKMIPVVV ASDDAQSCSE EAPTTTTEAS KSSCGPQDSL HQWSEHESDG LARAV // ID W1Q0R4_AMBTC Unreviewed; 739 AA. AC W1Q0R4; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=AMTR_s00021p00221770 {ECO:0000313|EMBL:ERN14071.1}; OS Amborella trichopoda. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; OC Amborellaceae; Amborella. OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN14071.1, ECO:0000313|Proteomes:UP000017836}; RN [1] {ECO:0000313|Proteomes:UP000017836} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=24357323; RG Amborella Genome Project; RT "The Amborella genome and the evolution of flowering plants."; RL Science 342:1241089-1241089(2013). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KI392560; ERN14071.1; -; Genomic_DNA. DR RefSeq; XP_006852604.1; XM_006852542.2. DR EnsemblPlants; ERN14071; ERN14071; AMTR_s00021p00221770. DR GeneID; 18442320; -. DR Gramene; ERN14071; ERN14071; AMTR_s00021p00221770. DR KEGG; atr:18442320; -. DR KO; K14486; -. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000017836; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000017836}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000017836}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 144 246 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 629 722 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 144 246 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 739 AA; 82472 MW; 7BD3D7E33B2C913D CRC64; MAYAEEFRGA LPQPEQSLGM FPQNLSSECS APGPTNDALY RELWHACAGP LVTIPGEGER VYYFPQGHME QLEVSMNQGV EQQVPLFNLP SKILCRVMQV QLRAEPDNDE VYAQYTLIPE LDQSELSSPD SCPPVPPKPA VRSFCKTLTA SDTSTHGGFS VLRNHADECL PPLDKTQQPP TQELVAKDLH GIEWRFKHIY RGQPRRHLLT TGWSVFVSSK RLVAGDAFIF LRGDNGELFV GIRRLLRQQS TMPSSVISSD SMHLGVLATA TRAISFQSLF TVYYKPRTSP SGFIIGVNKY LEAMNHRLSV GMRFKMKFEG EDTSERRYTG TIIGVGDVSP GWNDSQWRSL KVQWDESSAI RRPDRVSPWE LEPIVSTSPL TTTIQPRNKR ARLPNMPMSR ERSILGGCKN TTDPSSPYWY SSQTTQTSEL NSDTEGESGQ SHILWGQKQM DLKNDALGHS PRPSTENWMN HFSNQTESTL LKSPKLLFQD GEFKPERARS IGSAFSSGEL QSKWAPSMAG HSQTEGSVEP HSDLNRGCLS GMVTKERKPD SNGYRLFGIL IDNNSSHGED SLPQTGKIPA AIEEHPVQAS VNGHSQPADS EDPSRVAIIE GKSSHSSPKD VHKASISTRS CTKVLMQGIG VGRAVDLTKL NGYPDLIKEL EERFDIKGEL QSPNKKWEVV YMDDEGDMML VGDDPWAEFC NMVRKIAIYP CEEVKKMTNR TRLHCSEEPA TPTSEHKTE // ID W4ZMU8_WHEAT Unreviewed; 291 AA. AC W4ZMU8; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1; TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1; TRIAE_CS42_1AL_TGACv1_001794_AA0035250. DR Gramene; TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1; TRIAE_CS42_1AL_TGACv1_001794_AA0035250.1; TRIAE_CS42_1AL_TGACv1_001794_AA0035250. DR OMA; FEDSERP; -. DR OrthoDB; EOG09360OUG; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 30 144 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 291 AA; 31407 MW; 6254F336AD450D78 CRC64; MEFSPTAPAG GEESERVCAS SSVVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPLDG AAAALAAEGS GGKGMVLSFE DRAGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKSLGAGDT VLFGRGVGDG AARDRLYIDF RRRRPAESYS ATVAFPPPAT SSLSHRLPLL PSVPFCPWRR DFGTTYGVPP AASGSNRHVL FLRQQVPAAV VLKSVPVRAA ASVLEPPARP MPKRVRLFGV NLDSPATEDD GTCGVTQTVT STLLQQLLPS PSSSTSSTAG KERQCSLDLG L // ID W5A4W6_WHEAT Unreviewed; 283 AA. AC W5A4W6; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1; TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1; TRIAE_CS42_1BL_TGACv1_033228_AA0137920. DR Gramene; TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1; TRIAE_CS42_1BL_TGACv1_033228_AA0137920.1; TRIAE_CS42_1BL_TGACv1_033228_AA0137920. DR OMA; EFRMVLE; -. DR OrthoDB; EOG09360K9G; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 139 230 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 283 AA; 31937 MW; 2237E033AFCE3D71 CRC64; MATAEASSAS GAGAAYEEER RKRILDNLKH LEDLGISKMA KSLIQATRQQ DKTPRASPKS RKKFEATTEV RRSSRARTTV SYKDDFPELD DFVRRRRVSK SVDNGRGYTG RISSYQQQQR AFKRAEKLQD SLDPDNPSFV KTMVRSHVSS CFWLGLPSSF CKDHLPPREH KMVLEDEEGV EFDAVYIGNR TGLSGGWRGF SMHHDLEDGD SLVFELAEPD RFKIYISKAI EDGKEAEPND KNADVDSDSA QEVPDQTDSP VSEPPSSPEP LKGAKRRKLR GRR // ID W5A7T7_WHEAT Unreviewed; 673 AA. AC W5A7T7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1; TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1; TRIAE_CS42_1BS_TGACv1_050093_AA0167290. DR Gramene; TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1; TRIAE_CS42_1BS_TGACv1_050093_AA0167290.1; TRIAE_CS42_1BS_TGACv1_050093_AA0167290. DR OrthoDB; EOG093601YU; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 544 644 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 673 AA; 75526 MW; 46127B95E196F18D CRC64; MRRSKGSGRR RAAEERKLVR MAEEAAAASS MQAAAAAALA SLHLPPPEPA ETDNQDRKFF GRGARIKRKA KRKWGFVGGE AGAVDSGGLR PRLSHRRSTC RGGVGSMDEV LHGEVGIRSR FSAGRIREIM RGLTPRQQGY VAKYGFEHFN RIGAFSVHEP LTEWIMGKIN PPFSEFRINA DKTIVFSKPL VQKILGVPTG ERPFVLHGQK SDKIKELRDL YLNNGLRATI PHCVSLLKNN EDEESFMRTF LLIALAAVLT PTTGNTIDLD YLWAFEDMSK VQDLDWAGHI TEHLMDEVQK FQYKSREEKM RDFWVGGCLP LLTIAYMDHL DLPRGRIVDH EINYSVPRIC HVSKDDFQFA AIADLHRQHF KFATFGILPF RDRTPYTDNP VTDTEVAEDD LRILSNDQVL SGQWELVEVH EERIDELVKE TQPEVLGFAE ASIDRPRPGR TDIGSNQGTK KSASCERDSS SHCRNTAKAA VTPSSSEKSV EDIAREYESS ESDDHPTPPE ADYGVIFRSF LSGTQMERVN MLIHKIKPET IVFVATMRKC DVQLPTPLLI ISKERSLAAA AHFPHENGAV TLQMPGKSEK WRPRFFIEKD NCMLAGNWLD FVCDNQVQAG DICIFVPAKG GERSTFTVHI IRAEATHRRG VKRVRSSHDS PVGVEGMANP DAV // ID W5AP41_WHEAT Unreviewed; 977 AA. AC W5AP41; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.1; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.1; TRIAE_CS42_2AL_TGACv1_093659_AA0284740. DR EnsemblPlants; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2; TRIAE_CS42_2AL_TGACv1_093659_AA0284740. DR Gramene; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.1; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.1; TRIAE_CS42_2AL_TGACv1_093659_AA0284740. DR Gramene; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2; TRIAE_CS42_2AL_TGACv1_093659_AA0284740.2; TRIAE_CS42_2AL_TGACv1_093659_AA0284740. DR OMA; SSWKLVY; -. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 148 250 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 873 957 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 148 250 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 977 AA; 107830 MW; A282ADCCA5BC808E CRC64; MAAASQEKQQ QLPTFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL QPVNSETDVF PIPSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS MQPPNQELIV RDLHDNMWTF RHIYRGQPKR HLLTTGWSLF VGAKRLKAGD SVLFIRDEKS QLLVGVRRAT NQQTALSSSV LSTDSMHIGV LAAAAHAASS GSSFTIYYNP RTSPSPFVVP VARYNKANYI QQSVGMRMAM MFETEESSKR RYTGTIVGVS DSDPMRWPNS KWRNLQIEWD EHGYGERPER VSIWDIETPE NTIVFPSASL NSKRQCLPGY GVPGLDIASV NMSPFQRAPG NPYVPGLDIA SVNMSPFQRA PGNPYGNLQH MPAVGSELAM MMFLNQSGQN IGTPLSCHQS SYSSIIQNVK QNYMPPSTFG HPIGSIKPES MPSNEVQQQQ QLHAPKMQRG DSESCEVHPA TDSVSASELH VAGREPRNTD KYPSQSISEQ NGKGEPRVKP RRSKKGSSRK TISENSELSS APSQICDDQL HVSEAELISC DTKNVNCGNN EGSSGALTHG DFAGQLQCQQ VEQNELVSPP KLESSISPDG GKSVNSFPNQ ASFSQFFDGL DWMVQPPYYQ DSNGIQSVSA SENIFSPSAN MASTINTDTL ETFQNSCLSD CFPNSIQDFV GSPDLHSLTF LSPEMQNLDV HHDGSNVPST SNSYVQMSFS EDDSGNHMES MQRGMNNISS CSQPQTTEGF NLGMYSKLPS LKESQVLSLP EIHNSSRGTS SCSMDAAEYS IDRNAKPMKP PVRTYTKVQK LGSVGRSIDV TRYRDYRELR SAIASMFGLQ GKLEHPASSD WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGMQVLN DCIQADQ // ID W5AUH3_WHEAT Unreviewed; 654 AA. AC W5AUH3; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1; TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1; TRIAE_CS42_2AL_TGACv1_095131_AA0307260. DR Gramene; TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1; TRIAE_CS42_2AL_TGACv1_095131_AA0307260.1; TRIAE_CS42_2AL_TGACv1_095131_AA0307260. DR OMA; KRWQVVY; -. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 654 AA; 72519 MW; 89124184D0EF0FC7 CRC64; MAMANPSAAG APGICSDALF RELWHACAGP LITVPRQGER VYYFPQGHME QLEASTNQQL DQYLPMFNLP SKILCSVVNV ELRTEADSDE VYAQIMLQPE ANQGELTSLG PEPKELEKGT IHSFCKTLTA SDTSTHGGFS VLRRHAEECL PPLDMSQNPP CQELVAKDLH GTDWHFRHIF RGQPRRHLLT TGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRHMRQVN NMPSSVISSH SMHLGVLATA SHAISTGTLF SVFYKPRTSQ SEFVVSVNKY LEAKKQNISV GMRFKMKFEG DEALERRFSG TIIGIGSTPT VSTSLWADSD WKSLKVQWDE PSSILRPDRV SPWELEPLDA ANPQPPQPPL RNKRPRLPAS PSVVPELAPK FGLWKSPAEP SQTLSFSEPQ QARGLFTNSR FSSSSNVAFN QFYWPARESR EDSYAGSTNK VTVERKLEPA AGGCRLFGIE IRSAVEETQP VLTVSGDGYD QTAASVDVDS GELSQPSNMN NSGAQAASSE RALLETQSRQ VRSCTKVIMT GMAVGRAVDL TKLYGYVDLH RKLEEMFDIQ GELCSTLKKW QVVYADEEDD MMLVGDDPWD EFCNMAKRIY IYTYEEAKQL APKAAKLSRV NSSHESATPQ SGSDYPASFA NADC // ID W5AWT5_WHEAT Unreviewed; 515 AA. AC W5AWT5; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1; TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1; TRIAE_CS42_2AL_TGACv1_094693_AA0301690. DR Gramene; TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1; TRIAE_CS42_2AL_TGACv1_094693_AA0301690.1; TRIAE_CS42_2AL_TGACv1_094693_AA0301690. DR OMA; FMRRTAN; -. DR OrthoDB; EOG09360CUV; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 110 212 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 515 AA; 55849 MW; 500C94E20D368EFF CRC64; MADAPPPATP APLDRDVWLA CATPLSRVPV VGSQVYYFPH GHSEQCPAPP RAPAHNLFPC TVAAVRFFAD PKTDEPFATV DLVPGPHRDP ALHLPDAHAH ADAATGFRYY AKQLTQSDAN NGGGFSVPRF CAELVFPPLD FEADPPVQRL RMTDPLGRGW DFRHIYRGTP RRHLLTTGWS KFVNAKLLVA GDAVVFMRRA DGELLAGIRR APRYPAVSQQ GAERRPRNAR ARVPPEEVDE AVRLAAEGAP FTVTYYPRQG AGEFVVPKQE VEDALVGAWA PGVQVRMKFL DAEERRSEWV NGIVKAVDPS IWRMLEIDWD ESVVGSLRNR HVNAWQVELV GYPPILKKLK ISETTLPPMC SGDVGMADPL LGPDCENMVM LLGSPMPAGM QGARHIGLTE LPSSSPTVLT TKQFFPPSSS GGSSEVVNPE AGSPPNNSVN MRPSEERRSI QLFGATITSP VQSATNGSSE EVSQAPDAAV DGTAHEYASA TSLLDCQLTI GKDDGHDRNA SKQEA // ID W5B2J3_WHEAT Unreviewed; 208 AA. AC W5B2J3; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2; TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2; TRIAE_CS42_2AS_TGACv1_112219_AA0333560. DR Gramene; TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2; TRIAE_CS42_2AS_TGACv1_112219_AA0333560.2; TRIAE_CS42_2AS_TGACv1_112219_AA0333560. DR OMA; MIINEAM; -. DR OrthoDB; EOG09360P43; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 110 201 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 208 AA; 23991 MW; ACDEB350A459C735 CRC64; MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAVK PKLKRKAPKP WDAADDAPPR RSGRIATLPE QPDYRDNLGT GKPRQQKEVK PDHAYAIAKA EELQDELGSD YPTFVKPMPQ SLTSLHIPAQ FSMEHLPDNG MRMVLVDEEE EEFKVSYRPH SSSLVAGWSE FAIDNELVEG DCLVFQLIKR ALFKVYIFRA SSYYENEH // ID W5B5T7_WHEAT Unreviewed; 851 AA. AC W5B5T7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1; TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1; TRIAE_CS42_2AS_TGACv1_113271_AA0353770. DR Gramene; TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1; TRIAE_CS42_2AS_TGACv1_113271_AA0353770.1; TRIAE_CS42_2AS_TGACv1_113271_AA0353770. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 264 365 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 851 AA; 94138 MW; 2D3F1A1E710091DD CRC64; MKNPGPQPVS CQVAPKLFLP PPNNQRLFGK SDELLPGRPL ESPSLMLDSR SDDIAIITKS NHPFMVKNLE IGQSSNILRQ KEIENGARQI KWEQPTLSIG DMGRMPFLIR PQSALESPQS QCTRRDDNRD PTADSTTSES ISEAGLSMSL GIANNGNKME ATSTMERPMV SPTTPFSEGR ELATTLSPFQ HAQRARHFLT RPPRVAEGAA FDPMRDGFPH LRVARPPAEG RGRNQLLPRY WPRITDQELQ QISGDSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP LTIQDAKGKE WHFQFRFWPN NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IEPGGKLVMG FRKATNTVSL PDSQISAIAT GSLLGDSFFS NTNENLSIVS GYSGFLQSMK GAADLQPSSL FDHHANSADG DVSWLKADRF GGRPDEGSFQ FLHKRSRSIG SKSRRLLMDN EEALELKLSW EEAQELLRPA PSAKPTVVMI EDYEFEEYDE PPVFAKRSIF TSRSTGEQDQ WIQCDDCSKW RRLPLNVIIA SKWRCADNTW DPKSCSCSAP EELAHKELQN ILQQYEEIRR RKSNYFLKQS IPEMDASSLD ALATAAVFGE VGNQGAASVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKRIAWV GRDEPEGSNL SRSPQTVDTA RDCDVIMFDK AGANKGHIDL NFHPASREEE QQHGGQPRVS MVSLLEVANR PLESYMKQNG LVSLAAEQGS SSGTATVPSQ PAPMESEERP SDEGRAVAVE QEREPVDNMS VDEAACENQG NAASASDIAA T // ID W5B609_WHEAT Unreviewed; 543 AA. AC W5B609; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641965_AA2108570.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641965_AA2108570.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641965_AA2108570.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641965_AA2108570.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641965_AA2108570.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_U_TGACv1_641965_AA2108570.1; TRIAE_CS42_U_TGACv1_641965_AA2108570.1; TRIAE_CS42_U_TGACv1_641965_AA2108570. DR Gramene; TRIAE_CS42_U_TGACv1_641965_AA2108570.1; TRIAE_CS42_U_TGACv1_641965_AA2108570.1; TRIAE_CS42_U_TGACv1_641965_AA2108570. DR OMA; HEDFVIW; -. DR OrthoDB; EOG09360F7D; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 208 299 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 486 534 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 543 AA; 60481 MW; 2DA292E177C54489 CRC64; MAIDQSLKRK RGRPAGGGGS PSVNKSQRDK MVMEQKMALV HQRLALLDSE SDKDADVVPT ATMDDKLAAV VVDQQPVVIN FGDTDDEDEY VPLRIVRPRR LDSEQEKLLD VSQTHNAQGT DTAKKKRGRL VKAQSNMEQK LKLSTPRLAL VESGCSNSSK SDIEEDLVPM VAAVNCKKTC ARVQGNFGSA MERAEEVLVK LPAEHPSFVK HMLHSHVVQG FWLGLPSGFC NKHLPKKDVT IVLEDEDGHN YDAKYLGAKQ GLSGGWRGFA LNHDIKVGDV VVFQLVSSAK FKVYILRANN FTITDGALGL LCLEAGKEKI LKEERSIDVK SKENPKFRSD GSNPASDSIT DGIRFSDTAI GFDDVKSFSN FNIIVDGLVI DCKFPDHLRK TYYELCCAQE SFLHKDLLKQ INLTLAVGVI METINIAEGI RACKAHASSH EDFVIWKKTL EAFELLGMNV KFLLKRIDDL LSLSALPRDP AEHEGYKEMK LERARAGAKM KELESMMSSV KDTLKKMDVE MEEMESSAKR TDEMLRRLAT APW // ID W5B7B1_WHEAT Unreviewed; 654 AA. AC W5B7B1; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2; TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2; TRIAE_CS42_2BL_TGACv1_129350_AA0379740. DR Gramene; TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2; TRIAE_CS42_2BL_TGACv1_129350_AA0379740.2; TRIAE_CS42_2BL_TGACv1_129350_AA0379740. DR OrthoDB; EOG09360207; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0010150; P:leaf senescence; IEA:EnsemblPlants. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 124 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 654 AA; 72582 MW; 57384BB1F4E80D2A CRC64; MAMANPSAAG APGICSDALF RELWHACAGP LITVPRQGER VYYFPQGHME QLEASTNQQL DQYLPMFNLP SKILCSVVNV ELRTEADSDE VYAQIMLQPE ANQGELTSLG PEPQELEKGT IHSFCKTLTA SDTSTHGGFS VLRRHAEECL PPLDMSQNPP CQELVAKDLH GTDWHFRHIF RGQPRRHLLT TGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRHMRQVN NMPSSVISSH SMHLGVLATA SHAISTGTLF SVFYKPRTSQ SEFVVSVNKY LEAKKQNISV GMRFKMKFEG DEALERRFSG TIIGIGSTPT MSTSPWADSD WKSLKVQWDE PSSILRPDRV SPWELEPLDA ANPQPPQPPL RNKRPRLPAS SSVVPELAPK FGLWKSPAEP SQTLSFSEPQ QARGLFTNSR FSSSSNVAFN QFYWPARESR EDSYAGSTNK VTVERKLEPT AGGCRLFGIE IRSAVEETQP VLTVSGDGYD QTAASVDVDS GELSQPSNIN NSGAQAASSE RALLETQSRQ VRSCTKVIMT GMAVGRAVDL TKLYGYVDLH RKLEEMFDIQ GELCSTLKKW QVVYADEEDD MMLVGDDPWD EFCSMAKRIY IYTYEEAKQL APKATKLSRV NSSHESVTPQ SGSEYPASFA NADC // ID W5B991_WHEAT Unreviewed; 409 AA. AC W5B991; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641137_AA2086430.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641137_AA2086430.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641137_AA2086430.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641137_AA2086430.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_U_TGACv1_641137_AA2086430.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_U_TGACv1_641137_AA2086430.1; TRIAE_CS42_U_TGACv1_641137_AA2086430.1; TRIAE_CS42_U_TGACv1_641137_AA2086430. DR Gramene; TRIAE_CS42_U_TGACv1_641137_AA2086430.1; TRIAE_CS42_U_TGACv1_641137_AA2086430.1; TRIAE_CS42_U_TGACv1_641137_AA2086430. DR OMA; HEGNDDE; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 105 210 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 409 AA; 43701 MW; 88562C0F734018AF CRC64; MEFTAASSSS RLSKEGEEEE EMEEEEEEGD EASPREIPFM TAMTAAASSS SPTSAASPSS AAASACASGS GSPFRSSDGA GASGSGAGGG AGGGDVEVID KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDAAANEK GLLLSFEDRG GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF CRGAAEATRD RLFIDWKRRA ELRDPHRLAR LPMPMPTSSP YGPWGAGPGG FFMPPAPPAT LYEHHRLRQS FDFRSISPAA PQRPQVLYFG SAGIFPHATM PPPQPQPPLH IAVQPSPAVT VGMPMVLDST PLVNSPTAAA KRVRLFGVNL DNPHTHGGES SNDANALSLR MPGWQRPTPF RSLELPQHGA AGAESSAASS PSSSSSSKRE AHSSLDLDL // ID W5BGF0_WHEAT Unreviewed; 955 AA. AC W5BGF0; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.1; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.1; TRIAE_CS42_2BL_TGACv1_129979_AA0400900. DR EnsemblPlants; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2; TRIAE_CS42_2BL_TGACv1_129979_AA0400900. DR Gramene; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.1; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.1; TRIAE_CS42_2BL_TGACv1_129979_AA0400900. DR Gramene; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2; TRIAE_CS42_2BL_TGACv1_129979_AA0400900.2; TRIAE_CS42_2BL_TGACv1_129979_AA0400900. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 149 251 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 851 935 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105353 MW; 7FFE70E74143333A CRC64; MAAASQEKQQ QQLPAFGVLR NAAALLDEMQ LMGEAQGAKK VINSELWHAC AGPLVCLPQR GSLVYYFPQG HSEQVAATTK KTPNSRIPNY PSLPSQLLCQ VHNITMHADK DTDEVYAQMT LQPVNSETDV FPIPSLGSYA KSKHPAEYFC KNLTASDTST HGGFSVPRRA AEKLFPQLDY SMQPPNQELI VRDLHDNMWT FRHIYRGQPK RHLLTTGWSL FVGAKRLKAG DSVLFIRDEK SQLLVGVRRA TNQQTALSSS VLSTDSMHIG VLAAAAHAAS SGSSFTIYYN PRTSPSPFVV PVARYNKANY IQQSVGMRMA MMFETEESSK RRYTGTIVGV SDSDPMRWPN SKWRNLQIEW DEHGYGERPE RVSIWDIETP ENTIVFPSAS LNSKRQCLPG YGVPGLDIAS VNMSPFQRAP GNPYGNLQHM PAVGSELAMM MFLNQSGQNI GTPLSCHQSS YSSIIQNVKQ NYMPPSTFGH PIGSIKPESM PSNEAQQQQL HAPKMQRGNS ESCEVQPATD SVSASELHAA GREPRYTDKS PSQSISEQNG KGEPRVKPRR SKKGSSHKTI SENSELSSAP SRFCDDQQHV SEAELVSCDT KHVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS FSQFFDGLDW MVQPPYYQDS NGIQSVSASE NIFSPSANIG STINTDTLET FQNSCLSDCF PNSIQDFIGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSED DSGSHMESIQ RGMNNISSCS QPQTTEGFNL GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSID RSAKPLKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ // ID W5BKE9_WHEAT Unreviewed; 950 AA. AC W5BKE9; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1; TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1; TRIAE_CS42_2BS_TGACv1_147340_AA0481970. DR Gramene; TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1; TRIAE_CS42_2BS_TGACv1_147340_AA0481970.1; TRIAE_CS42_2BS_TGACv1_147340_AA0481970. DR OrthoDB; EOG0936022K; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 363 464 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 950 AA; 104502 MW; A1528D7D37672990 CRC64; MAGMGAAAAA RCMNAACGAP APGAGDWRKG WPLRSGGFAV LCDKCGLAFE QFVFCDIFHQ KESGWRDCSF CGKRLHCGCV ASKNSFDLLD SGGVQCANCM KNPGAHPVSC QVAPKLFLPP QNNQRLFGKS DELLPGRPLE SPSLMIDSRN DDIAIIAKSN HPFMVKNLEI GQSSNNLRQK EIENGARQIK WEQPTLSIGD MGRMPFLIRP QSALESPQSQ CTRRDDNRDP TADSTTSESI SEAGLSMSLG IANNGNKMEA TSTMERPMVS PTTPFSEGRE LATTLSPFQH AQRARHFLTR PSRVAEGAAF DPMRDGFPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIATG SLLGDSFFSN TNENLSIVSG YSGFLQSMKG AADLQPSSLF DHHANSADGE VSWLKADRFG GRPDEGSFQF LHKKSRNIGS KSRRLLMDNE EALELKLSWE EAQELLRPAP SAKPTVVMIE DYEFEEYDEP PVFAKRSIFT SRSTGEQDQW IQCDDCSKWR RLPLNVIIAS KWRCADNTWD PKSCSCSAPE ELAHKELQSI LQQYEEIRRR KSNYFLKQSI PEMDASSLDA LATAAVFGEV GNQGAASVAT TTKHPRHRPG CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR RRFKTLMMRK KQRQSEREEA EASKRISWVG RDEPEGSNLS RSPQTVDTMR DGDVIMFDKA DASKGHIDLN FHPASREEEQ QHGGQPRVSM VSLLEVANRP LESYMKQNGL VSLAAEQGSS SGTATVPSQP APMESEERPS DEGRAVPVEQ EREPTDNMAV DEAAGENQGH AASASDIAAA // ID W5BS22_WHEAT Unreviewed; 267 AA. AC W5BS22; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1; TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1; TRIAE_CS42_2DL_TGACv1_160515_AA0551320. DR Gramene; TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1; TRIAE_CS42_2DL_TGACv1_160515_AA0551320.1; TRIAE_CS42_2DL_TGACv1_160515_AA0551320. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 267 AA; 30021 MW; 39F5215C96F5AF88 CRC64; MAMHSLSQGH PQAWPWGVAM YTNLHYHHQH EREHLFEKTL TPSDVGKLNR LVIPKQHAER YFPLNGGDSP GDKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGHI VHFERVRGLG TGDRLFIHCR RRGESAPPPP VRVPPPALNA GEQQPWSPMC YSTSGSYPTS PANSHVYRRS VEQDHSDMLH AGDSRREADA KSSTASGPPS RRLRLFGVNL DCGPEPEAEA ATPMYGYTHH SPYAAAVATV PTYWGSS // ID W5C2G9_WHEAT Unreviewed; 955 AA. AC W5C2G9; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 31. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1; TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1; TRIAE_CS42_2DL_TGACv1_159381_AA0537490. DR Gramene; TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1; TRIAE_CS42_2DL_TGACv1_159381_AA0537490.1; TRIAE_CS42_2DL_TGACv1_159381_AA0537490. DR OrthoDB; EOG093600UT; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0016020; C:membrane; IEA:EnsemblPlants. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants. DR GO; GO:0044212; F:transcription regulatory region DNA binding; IEA:EnsemblPlants. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0009908; P:flower development; IEA:EnsemblPlants. DR GO; GO:0010305; P:leaf vascular tissue pattern formation; IEA:EnsemblPlants. DR GO; GO:0009942; P:longitudinal axis specification; IEA:EnsemblPlants. DR GO; GO:0048507; P:meristem development; IEA:EnsemblPlants. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0048364; P:root development; IEA:EnsemblPlants. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 149 251 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 955 AA; 105367 MW; 722118B1356596C4 CRC64; MAAASQEKQQ QLLPTFGVLR NAAALLDEMQ LMGEAQGAKK VINSELWHAC AGPLVCLPQR GSLVYYFPQG HSEQVAATTK KTPNSRIPNY PSLPSQLLCQ VHNITMHADK DTDEVYAQMT LQPVNSETDV FPIPSLGSYA KSKHPAEYFC KNLTASDTST HGGFSVPRRA AEKLFPQLDY SMQPPNQELI VRDLHDNMWT FRHIYRGQPK RHLLTTGWSL FVGAKRLKAG DSVLFIRDEK SQLLVGVRRA TNQQTALSSS VLSTDSMHIG VLAAAAHAAS SGSSFTIYYN PRTSPSPFVV PVARYNKANY IQQSVGMRMA MMFETEESSK RRYTGTIVGV SDSDPMRWPN SKWRNLQIEW DEHGYGERPE RVSIWDIETP ENTIVFPSAS LNSKRQCLPG YGVPGLDIAS VNMSPFQRAP GNPYGNLQHM PAVGSELAMM MFLNQSGQNM GTPLSCHQSS YSSIIQNVKQ NYMPPSTFGH PIGSIKPESM PSNEAQQQQL HAPKMQRGDS ESCEVQPAAD SVSASELHVA GREPRNTDKY PSQSISEQNG KGEPRVKPRR SKKGSSRKTI SENSELSSAP SRICDDQQHV SEAELVSCDT KHVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS FSQFFDGLDW MVQPPNYQDS NGIQSVSASE NIFSPSANIG STINTDTLET FQNSCLSDCF PNSIQDFIGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSEE DSGNHMESMQ RGMNNISSCS QPQTTEGFNL GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSIG RSAKPMKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ // ID W5C6M2_WHEAT Unreviewed; 210 AA. AC W5C6M2; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1; TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1; TRIAE_CS42_2DS_TGACv1_177937_AA0587790. DR Gramene; TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1; TRIAE_CS42_2DS_TGACv1_177937_AA0587790.1; TRIAE_CS42_2DS_TGACv1_177937_AA0587790. DR OrthoDB; EOG09360PZA; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 112 203 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 4 25 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 210 AA; 24410 MW; 8ADBE062169178A7 CRC64; MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAVK PRLKRKAPKP RDAADDAPPR RSGRIATLPE QPDYRDNVKL GTRKPWQQKE VKPDHAYAIA KAEELQDELG SDYPTFVKPM PQSLTSLHIP AQFSMEHLPD HGMRMVLVDE EEEEFKVRYR PHSSSLVAGW SEFAVDNELV EGDCLVFQLI KRALFKVYIF RASSYYENDH // ID W5CGQ5_WHEAT Unreviewed; 567 AA. AC W5CGQ5; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1; TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1; TRIAE_CS42_3AL_TGACv1_193635_AA0615890. DR Gramene; TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1; TRIAE_CS42_3AL_TGACv1_193635_AA0615890.1; TRIAE_CS42_3AL_TGACv1_193635_AA0615890. DR OMA; IDRMMIC; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 499 563 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 567 AA; 63781 MW; 7E8611592BF2835A CRC64; MSDPCECCQI KLKFLRQING NFMHSLVIPE WFVNQFGGKI WRTVKLESPN GNVYDVGVTE NMNRTILKSG WASFVDANKI EENYSLMFRY LGNTRFKVTI FDSSGKQKAS CCARMGTAAS DVRNPSTFDV DNSSSSCGGT TQSSPSERSD SDGSQKESSY GYKKSAKKAA ISDSSEELSA EDSLSRDNLV ESYDVQVHLN DYVLSGKCDL TVAQEAKIQA LVEKIRSEIP VLVVQMKKTS ANFGNLIIRK DYALKYFPCE ATNIILQLPR KNKEWKCRFN PGRRNLYLGY FVHDNCVQEG DICLFQPIAK VKEGRFTIIV HLLHKESVRR SPGGTAGMTH TATDRRTSAK TSLTARVKKT SLTAHVKEEP ATDGEHKTTD RRTGAKTTLT SRVKEEPATD GEDTSSLRPE EDGDNSEGAS ETPFVLPERA SITPAQEQKV REKVEAFEST VPVYVAILNK CNVARKSGMI ITMGKQYALR YLQKQYFTGH RGKKNVISLV LQREGKSRMW DTELRRGIDR MMICKGWVAF ARGNHLQVGD LCLFKLMESE EPLKMMVYII RREKCLD // ID W5CW59_WHEAT Unreviewed; 758 AA. AC W5CW59; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=TRAES_3BF007300580CFD_c1 {ECO:0000313|EMBL:CDM82308.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM82308.1}; RN [1] {ECO:0000313|EMBL:CDM82308.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM82308.1; -; Genomic_DNA. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 177 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 758 AA; 83510 MW; BC16C8D03A5ECFF5 CRC64; MGRAQQQTLT QGEHHPVPRP DQLLLPPSLS PRPHSSFPPG EDRTAEPVHH QPTATRVAMA QPGRGRDPEL FAELWRACAG PLVEVPQRGE RVFYFLQGHL EQLQEPTDSA LLAEQIKMFQ VPYKILCKVV NVELKAEAET DEVYAQITLQ PESDQDNLPL ICDPILPETP RPVVHTFCKI LTPSDTSTHG GFSVLRRHAN ECLPPLDMAM PTPTQEIISK DLHGSEWRFK HIYRGQPRRH LLTTGWSTFV TSKKLMAGDA FVYLRSETGE QRVGVRRLVQ KQSTMPASVI SSQSMHLGVL ASASHALKTN SIFVVYYRPR LSQSQYIVSV NKYLQASKTG FTVGMRFRMN FEAEDVPVKK FFGTIVGDGD LSPQWSGSEW KSLKVQWDDS VAICNGPERV SPWEIDSSDG SSPAISALLQ SSAKNKRPRE ANENFDLPSQ EPTQEFWLSG MTQQHERTYV GSSDPNRISG YHQILWPSSE PAGYGAMSSS SVCQTPLGLG DGWPKDFNPS SQGVSPTLSE ITQKLNRVAS SEGRAPPPWA TALCGGYRAE EPTSKLSCNT TLPLPEQVAP YLPKVAEKAK EPGVVRLFGV NLMENTNNAA APTAGNASAG AGETSARVAG SVEGSGQLSA FSKVTKVANE SPREIQSQQS NIGRNRVKVQ MHGNAVGRAV DLASLDGYEG LTSELEQMFE IKDIKQNFKV AFTDNEGDTM KVGDDPWMEF CRMVRKIVIY PIEDDKNMDP RQRSVLAAAP DPDPKANL // ID W5CWS4_WHEAT Unreviewed; 350 AA. AC W5CWS4; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDM81002.1, ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_223423_AA0781970.1}; GN ORFNames=TRAES_3BF098300010CFD_c1 {ECO:0000313|EMBL:CDM81002.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM81002.1}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_223423_AA0781970.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_223423_AA0781970.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EMBL:CDM81002.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=25035497; DOI=10.1126/science.1249721; RA Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J., RA Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S., RA Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., RA Poulain J., Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., RA Rogers J., Vandepoele K., Aury J.M., Mayer K., Berges H., RA Quesneville H., Wincker P., Feuillet C.; RT "Structural and functional partitioning of bread wheat chromosome RT 3B."; RL Science 345:1249721-1249721(2014). RN [3] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3B_TGACv1_223423_AA0781970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; HG670306; CDM81002.1; -; Genomic_DNA. DR EnsemblPlants; TRIAE_CS42_3B_TGACv1_223423_AA0781970.1; TRIAE_CS42_3B_TGACv1_223423_AA0781970.1; TRIAE_CS42_3B_TGACv1_223423_AA0781970. DR Gramene; TRIAE_CS42_3B_TGACv1_223423_AA0781970.1; TRIAE_CS42_3B_TGACv1_223423_AA0781970.1; TRIAE_CS42_3B_TGACv1_223423_AA0781970. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 56 111 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 169 278 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 56 111 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 169 278 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 350 AA; 38321 MW; 3F34CFB40A68B66E CRC64; MGVEILSSMV EHSFQYSSGV STATTESGTA GTPPRPLSLP VAIADESVTS RSASSRFKGV VPQPNGRWGA QIYERHARVW LGTFPDQDSA ARAYDVASLR YRGRDVAFNF PCAAVEGELA FLAAHSKAEI VDMLRKQTYA DELRQGLRRG RGMGARAQPT PSWAREPLFE KAVTPSDVGK LNRLVVPKQH AEKHFPLKRT PETPTTTGKG VLLNFEDGEG KVWRFRYSYW NSSQSYVLTK GWSRFVREKG LGAGDSILFS CSLYEQEKQF FIDCKKNTSM NGGKSASPLP VGVTTKGEQV RVVRLFGVDI SGVKRGRAAT ATAEQGLQEL FKRQCVAPGQ HSPALGAFAL // ID W5D7F2_WHEAT Unreviewed; 531 AA. AC W5D7F2; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.1; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.1; TRIAE_CS42_3DL_TGACv1_249921_AA0858590. DR EnsemblPlants; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2; TRIAE_CS42_3DL_TGACv1_249921_AA0858590. DR Gramene; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.1; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.1; TRIAE_CS42_3DL_TGACv1_249921_AA0858590. DR Gramene; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2; TRIAE_CS42_3DL_TGACv1_249921_AA0858590.2; TRIAE_CS42_3DL_TGACv1_249921_AA0858590. DR OMA; GITITMG; -. DR OrthoDB; EOG093608PE; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 463 527 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 11 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 463 527 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 531 AA; 59601 MW; 8AE96F5A8B2F2CAA CRC64; MSDPCECCQI KLKFLRQING NFVHSLVIPE WFVSQFGGKV WRTVKLESPD GNVYDVGVTE NMNRTILKSG WASFVDANKI EENYSLMFHY LGNARFKVTI FDSSGKQKAS CCARMGTAAS DVRNPSTFDV DNSSSSCGGG TQSSPSERSD SDGSQKESSY GYKKSAKKAA ISDSSEGLSA EDSLSRDNLV ESYDVQEHLN DYVLSGKCDL TVAQEAKIQA LVEKIRSEIP VLVVQMKKTS ANFGNLIIRK DYALKYFPCE ATNIILQLPR KNKEWKCRFN PGRRNLYLGY FVHDNCVQEG DICLFQPIAK VKEGRFTVIV HLLHKESVHR SPGGTAGMTH TPTDGRTGAK TSLTARVKEE PATDGEDMSS LGHKEDGDNS EGAPETPFIL PDRASITPAQ EQKVWKKVEA IESTVPVYVA ILNKCNVSRK YGITITMGKQ YVSRYLEKQY FTGHRGKKNV ISLVLQREGK SRTWDTELRR GTDRMRICKG WVAFVRGNRL RVGDLCLFKL MESEEPLKMM VYIIRREKCL D // ID W5DNY2_WHEAT Unreviewed; 279 AA. AC W5DNY2; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1; TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1; TRIAE_CS42_4AL_TGACv1_291023_AA0991460. DR Gramene; TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1; TRIAE_CS42_4AL_TGACv1_291023_AA0991460.1; TRIAE_CS42_4AL_TGACv1_291023_AA0991460. DR OMA; ANSQAYR; -. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 37 141 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 279 AA; 31176 MW; 5ABEEF4B4454871F CRC64; MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE RCFPLGGDSG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLEAGDVV HFERVRGLGT GDRLFIGCRR RGDVSAPTAV APPPAVHVVP ASGQSPREQQ QHQQPWSPMC YSTSTSYPTS PATSHAYRRS AEHDHSDMHH AGESQWDADT RSCSPASAPT RRLRLFGVNL DCAPEPEAEA VPATPAMYGY VHQSPYAAVS PVPSNWGSS // ID W5DP40_WHEAT Unreviewed; 525 AA. AC W5DP40; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1; TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1; TRIAE_CS42_4AL_TGACv1_288850_AA0959680. DR Gramene; TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1; TRIAE_CS42_4AL_TGACv1_288850_AA0959680.1; TRIAE_CS42_4AL_TGACv1_288850_AA0959680. DR OMA; MASCFQP; -. DR OrthoDB; EOG093607P2; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 24 117 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 195 290 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 459 521 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 525 AA; 58980 MW; 488642DCA6F80B74 CRC64; MNGDCENCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNSIR IPRELSTHLR SRISDTIKLD TPNGRTYDVV VTWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSRGCE KMASCFQPPS EIFGAFPPSE PCDHHVLNAA PNPRHVQTQV EFDYTMSTGC YLTKSQDEKV VEIARKIRSE IPLYVAIMKK LNVNVKDCSI NIPLRLVSHL KEEAGSAIIK LEAPGGNIYN VRASKHSEDQ VVLQSDWDAF VAANHIQLND LLIFHSKGKT RLKVLALDPS GCEKNSSCFD TKKISKTGEG SVQITDARPC TVEIIDLTSS DDDHTEREDA GRSSGRRKQV PGSHAKAWKM ASASSPSTKS GSDTHKLKHP ISNNDNLQGP SRPPYILARG VTLTGRVEKK VQEKVQAIGS ELPIYVAVMT KSCVGGNLFS LEFCAEYAST LPSRDQTLIL ELEDKDWHTT LHIKGSRKII YRGWSKFACD NNLQLGDICL FKMAERRTRG LAMRVHFICK SGVFL // ID W5DWS6_WHEAT Unreviewed; 386 AA. AC W5DWS6; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1; TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1; TRIAE_CS42_4AS_TGACv1_306585_AA1010680. DR Gramene; TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1; TRIAE_CS42_4AS_TGACv1_306585_AA1010680.1; TRIAE_CS42_4AS_TGACv1_306585_AA1010680. DR OMA; EARRCIY; -. DR OrthoDB; EOG09360IIV; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 124 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 275 381 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 386 AA; 43135 MW; 208EBA711BDBB846 CRC64; MCEPIAVRPF LTSPFLGGGV KKSIPEEESR EARRCIYHRC TFERRGRGRR RKEEEEGFAT WHGIHGIVGS FFFLFLPLPL ALPSSQAPVS PPSQPAAAER GPGDRHRRLL SATPLRPETG EMEGFEFFQI ILDNSSSRLR LPDKFTRVLL DGGKPQEVKL QEAGHGRRFW DVKVVLDADG HMYLGRGWEQ FARAHDLRLG YFLVFSFDGD AVLTVKVFDV SMCRRHYQHD GDTSSGSSSD GDSGSSNASD GGSGGNNWSL AEMDVEDGPT GQFSAMLRKC NLGMKQEQYL NVPVDFQLAH GYAERSKVEL RMRGKSWLVH LKHNPKTGGR PRASFRYGWH QFCVDNALGE GDTCFFRALR QGSAGGGGED HLLKVEVRRR DGSFLV // ID W5DZ34_WHEAT Unreviewed; 244 AA. AC W5DZ34; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1; TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1; TRIAE_CS42_4AS_TGACv1_306992_AA1015940. DR Gramene; TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1; TRIAE_CS42_4AS_TGACv1_306992_AA1015940.1; TRIAE_CS42_4AS_TGACv1_306992_AA1015940. DR OMA; DPQFPSF; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 143 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 244 AA; 27418 MW; 6772A7180F0FF459 CRC64; MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT YAPKTPSPMK HKRRRVIEAA TPVPSPPRRS RRLAHLPEVK YADACAEVGE DSERVGRWSP RRRSGSIYLA GGGGGPISMK ARMEAASKAE ELESQLDPQF PSFMKRMLHS HVVRGFWLGL PSHFCDTYLP KNDCTITLVD EKDEEFESKY LAYKKGLSGG WAGFALDHVI RDGDSTVFQL IKPTTFKVHI IRAAVGDDDN EEME // ID W5E556_WHEAT Unreviewed; 244 AA. AC W5E556; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1; TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1; TRIAE_CS42_4BL_TGACv1_320689_AA1046300. DR Gramene; TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1; TRIAE_CS42_4BL_TGACv1_320689_AA1046300.1; TRIAE_CS42_4BL_TGACv1_320689_AA1046300. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 143 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 244 AA; 27405 MW; 59E47608B2AC2BB5 CRC64; MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT YAPKTPSPMK HKRRRIIEAA TPVPSPPRRS RRLAHLPEVK YADACAEVGE DSERAGRWSP RRRSGSIYLA GGGGGPISMK ARMEAASKAE ELESQLDPEF PSFMKRMLHS HVVRGFWLGL PSHFCDTYLP KNDCTITLVD EKDEEFESKY LAYKKGLSGG WAGFALDHVI RDGDSTVFQL IKPTTFKVHI IRAAVGDDDN EEME // ID W5E7K7_WHEAT Unreviewed; 319 AA. AC W5E7K7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1; TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1; TRIAE_CS42_4BL_TGACv1_320374_AA1037140. DR Gramene; TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1; TRIAE_CS42_4BL_TGACv1_320374_AA1037140.1; TRIAE_CS42_4BL_TGACv1_320374_AA1037140. DR OMA; MFLQATS; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 41 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 319 AA; 34795 MW; C4E08D7F90ADCB16 CRC64; MEFTAIRAST AAAAGCSSPP PTADHKAEEE AAGAVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD TSSTDKGLLL SFEDRAGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRGV GEAARGRLFI DWRRRPDVVL PPGHHRGFAL PSVPFSPWMA HPAGPGGAGG RMFLQATSPA TLYDYDAYQH HHQRRHIGYD GYGAAPGRQV VYYQPQQQYH HQHPSLVLES VPVRMSMAAA PAHPEPSAVA TSGSKRVRLF GVNLECAADA EEDFSGPGRT ATTALQLLSP ASSSSSSSGK ARCSLNLDL // ID W5EHS7_WHEAT Unreviewed; 241 AA. AC W5EHS7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1; TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1; TRIAE_CS42_4DL_TGACv1_343875_AA1140830. DR Gramene; TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1; TRIAE_CS42_4DL_TGACv1_343875_AA1140830.1; TRIAE_CS42_4DL_TGACv1_343875_AA1140830. DR OMA; HIPEVKY; -. DR OrthoDB; EOG09360L5R; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 140 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 241 AA; 27098 MW; 360667229DAD6AF1 CRC64; MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAP KTPSPMKHKR RRIIEAATPV PSPPRRSRRL AHIPEVKYAD ACAEVGEDSE RVGRWSPRRR SGSIYLAGGG GGPISMKARM EAASKAEELE SQLDPEFPSF MKRMLHSHVV RGFWLGLPSH FCDTYLPKND CTITLVDEKD EEFESKYLAY KKGLSGGWAG FALDHVIRDG DSTVFQLIKP TTFKVHIIRA AVGDDDNEEM E // ID W5EKI1_WHEAT Unreviewed; 316 AA. AC W5EKI1; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1; TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1; TRIAE_CS42_4DL_TGACv1_344523_AA1147720. DR Gramene; TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1; TRIAE_CS42_4DL_TGACv1_344523_AA1147720.1; TRIAE_CS42_4DL_TGACv1_344523_AA1147720. DR OMA; APPTHRF; -. DR OrthoDB; EOG09360JAF; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 40 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 316 AA; 34556 MW; A2A9D3C22D489606 CRC64; MEFTAIRPST AAAGGCSSPP PADHKAEEEA AGAVEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA SSTDKGLLLS FEDRAGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DTVSFGRGVG EAARGRLFID WRRRPDVVLP PGHHRGFALP SVPFSPWMAH PAGPGGAGGR MFLQATTPAT VYDYDAYQHH HQRRHIGYDG YGAAPGRQVL FYQPQQHYHH QHQSLVLESV PVRMVAAPEH PEASAVATSG SKRVRLFGVN LECAADAEED FSGPGRTATT ALQLLSPASS SSSSSGKARC SLNLDL // ID W5EKQ7_WHEAT Unreviewed; 422 AA. AC W5EKQ7; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1; TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1; TRIAE_CS42_4DL_TGACv1_343936_AA1141650. DR Gramene; TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1; TRIAE_CS42_4DL_TGACv1_343936_AA1141650.1; TRIAE_CS42_4DL_TGACv1_343936_AA1141650. DR OrthoDB; EOG093607I9; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 160 257 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 311 417 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 422 AA; 47454 MW; 16F7C5CF0070084F CRC64; MGEKWMLPIY VKRDQMDATI YCRPSLSLPE PIAVRHVRAH CRPALSHISI SRWRGQEVYP GPVGGIQRSE AFSIYHRCTF ERRGRGRRRK EEEEGFATWH GIHGIVGSFF FLFLPLPLAL PSSIASSSLS TLAASRCRER GGRHRRLLSA TPLRPGEMEG FEFFQIILDN SSSRLRLPDK FTRVLLDGGK PQEVKLREAG HRRRFWDVKV VLDADGHMYL GRGWEQFARA HGLRLGYFLV FSYDGDAVLT VKVFDVSMCR RHYQHDGDTS SGSSSDGDSG SSNTSDGGGG GNNWSLAEMD VEDGPTGQFS AMLRKCNLGM KQEQYLNVPV DFQLAHGYAE RSKVELRMRG KSWLVHLKHN PKTGGRSRAS FRYGWHQFCV DNALGVGDTC FFRALRQGSA GGGGEDHLLK VEVRKRDGSF LV // ID W5EPQ6_WHEAT Unreviewed; 648 AA. AC W5EPQ6; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1; TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1; TRIAE_CS42_4DS_TGACv1_361734_AA1172210. DR Gramene; TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1; TRIAE_CS42_4DS_TGACv1_361734_AA1172210.1; TRIAE_CS42_4DS_TGACv1_361734_AA1172210. DR OMA; DGRSKFS; -. DR OrthoDB; EOG093607KC; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 80 160 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 540 635 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 648 AA; 72154 MW; B4C7B61474237B07 CRC64; MVGNRRLELQ ERDRRRRQLQ ESAWREEQER ESREAAAAAA MAAADKERAR EKGKEKENGG EGGKFGQQFA RVFLPQLYGE RLKIPPSFNQ YLQDQPTGVV SLKGQSGNTW LAELASDNEG LFFVKGWKEF VRDHSIEMGH FLTFRYDGRS KFSVVIFDGM CIEKPSAFHA KPCKNLVVKI ESGKGDMDIN AADPSQASAA PLEESNGTTR KRVTEMDADG STSKNRSSIL ENGMPEASAV TCNVAPTSLN VDMNAADPPE AVVVPLEESN QTTRKRIREI DANDSALQKS LRVREIDANG SALQKSLRVR EIDANDSALQ KSSRVREIDA NDSALQSSRV REIDANETAL HKSSRVREID ANDSALHKSS RVREIDANDS ALHKSSRVRE IDANDSALQK SSRVREIDAN DSSLQKSSGL REIDANDSAL QKSSIASDKD KKRCPAASVG TYKSASTSLD STEDSDSSSS MLEQSISCIK SELTSPIRLG VSKDVARRGQ NSATGKRQLR VLSQRRLVTE IQKDNALLRA KQFKSKNPFG LQIMKESYVY VGFFLNLPCE FVRECLPRAH RKLKLWNPQG KSWDVNYVYY SERCVGGLSG GWGKFSLDNN LEKFDVCVFE LFSKDNIKVH IYRVVPEITP FLPGPGKK // ID W5F5K5_WHEAT Unreviewed; 891 AA. AC W5F5K5; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2; TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2; TRIAE_CS42_5AS_TGACv1_393130_AA1268830. DR Gramene; TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2; TRIAE_CS42_5AS_TGACv1_393130_AA1268830.2; TRIAE_CS42_5AS_TGACv1_393130_AA1268830. DR OMA; CENLPQR; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 891 AA; 98347 MW; 3BCFDE1ADFBCDAE1 CRC64; MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF ARYSSLMWLG DGDRGAQSLN FQGVGASPWL QPRMDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPPQQGH QVIQQSHQEM QQQLSSGCHR ISDVDSSMPG SESASQSQSS FYQQNLLEGN NDPSLHLHNG FRNFSSQDSS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSVQPKHE NVNHQSNMSH FAGTLAPQSA RDSSSVQAYG ANVDNQFLSS SFAFQDGMAG ARGGSSSGTV SMAIPLLRYS GEDLPPADTL ATSSCLGESG TFNSLDNMCG VNPSQDGTFV KVYKSGSPGR SLDITRFSSY YELRSELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSQQ EVQQMVRGGE GLLTSAPGAR MAHGNVCDGY SGGHDLQNLT GNMASVPPLD Y // ID W5FDZ5_WHEAT Unreviewed; 483 AA. AC W5FDZ5; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2; TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2; TRIAE_CS42_5BL_TGACv1_407130_AA1353700. DR Gramene; TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2; TRIAE_CS42_5BL_TGACv1_407130_AA1353700.2; TRIAE_CS42_5BL_TGACv1_407130_AA1353700. DR OMA; LEYASAC; -. DR OrthoDB; EOG093613WV; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 33 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 379 479 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 483 AA; 54066 MW; 1643B356CA549D8E CRC64; MDTDEFFNPG CGGPAGDGCD CGDCEEWRHD HGRTKHFLLF ASDHKDFLCT PWEVTRQLRN MITGSEPIKL EAPDGQMYSV EFVKFGLITL TTGWRRFVDA NHIQQGDPIL FVYCGSSTFK VHICTSSGHK NSLPCSQQPP NILRAVLLRD RHVLNEQVVP DPAHVQTSTD FGYTMFPGTC LSKAQEKKVL ELADSSMRSE IPLHVAPMNK RNASKDYYVC IPLRLLDNFK EGITETVIQL EAHGNNMVYS VGVSKHSDDQ IILQSELSDF VASLRIQDND LLVFRSKRKA RLEVLVLDPS GCEKTCFAMG NSSNAQEMAL TSSPCIKSGC PAGKLNEAGL EAPMSNKSYI LPERKNLTWQ QEKKVKEKVH AIESEFPVFV KVMTARDLSN PTKLLFCKEY ASACLPLKQT PLLIGLEGST MQWPTTLTVT EYTKGRMISL LWKDFVLDVG MKAGDICLVE LADRSSDSLK MMVHLIRKSE MQL // ID W5FH42_WHEAT Unreviewed; 265 AA. AC W5FH42; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1; TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1; TRIAE_CS42_5BL_TGACv1_407910_AA1360270. DR Gramene; TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1; TRIAE_CS42_5BL_TGACv1_407910_AA1360270.1; TRIAE_CS42_5BL_TGACv1_407910_AA1360270. DR OrthoDB; EOG09360P7Z; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 36 142 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 265 AA; 29862 MW; BCB7825071CE55EF CRC64; MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDI VHFERVRGLG TGDRLFIGCR RRGESAPSPV RVPPPTLNAG EQRPWSPMCY STSGSYPTSP ANSYAYRRSV EQDHSDMLHA GESQREADAK SSTASAPPSR RLRLFGVNLD CGPEPEAEAI TPMYGYTHQS PYAAVATVPS YWGSS // ID W5FK68_WHEAT Unreviewed; 355 AA. AC W5FK68; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 10-MAY-2017, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1; TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1; TRIAE_CS42_5BL_TGACv1_404919_AA1315110. DR Gramene; TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1; TRIAE_CS42_5BL_TGACv1_404919_AA1315110.1; TRIAE_CS42_5BL_TGACv1_404919_AA1315110. DR OrthoDB; EOG093601C8; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 262 350 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 355 AA; 38898 MW; 0B335DF7B9E48DFF CRC64; MAAGDVATVF LEMSLGTRLA VSFPASSTTV ADLKRIVSHE HAASFPHLGQ IAVQSIKVDQ GGSWFHLADS MAIRDTFRFQ GINERWHLQV DASLQVDQEM VTQGHSGGAN SANHSAPAPG RRHGYEGSSS RRCRKASSSD EMLPDQVEDE VEVEAEAQVK QPLPAKGERS SDGAVKDTEQ GAWGRRLRPR TQVTKTPITL SSSSSSSSSD SEETDTNTVG GSSESEEMDI NTVDAPAPHT PTPQFVVELK KCHFVKQNGQ YLNVPMEFGV VHRYTEKKKV LLRMGGESWA VNLKHGLTPT GRPRTSLRYG WDQFRVDNRL RAGETCFFRA LPGDDGGDHH VLKVEVRRLD GSYAT // ID W5FLV0_WHEAT Unreviewed; 891 AA. AC W5FLV0; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1; TRIAE_CS42_5BS_TGACv1_423450_AA1377000. DR EnsemblPlants; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.2; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.2; TRIAE_CS42_5BS_TGACv1_423450_AA1377000. DR Gramene; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.1; TRIAE_CS42_5BS_TGACv1_423450_AA1377000. DR Gramene; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.2; TRIAE_CS42_5BS_TGACv1_423450_AA1377000.2; TRIAE_CS42_5BS_TGACv1_423450_AA1377000. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 757 841 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 891 AA; 98341 MW; E1C337A5524B84F2 CRC64; MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF ARYSSLMWLG DGDRGAQSLN FQGVGASPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPPQQGY QVIQQSHQEM QQQLSSGCRR ISDVDSSMPG SESASQSQSS FYQQNLLEGN NDPSLHLHNG FRNFSSQDSS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSMQPKHE NINHQSNMSH FAGTLAPQSA RDSSSVQAYG ANADNQFLSS TFAFQDGMAG ARGGSSSGTV SMAIPLLRYS GEDLPPADTL ATSSCLGESG TFNSLDNMCG VNPSQDGTFV KVYKSGSPGR SLDITKFSSY YELRSELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSQQ EVQQMVRGGE GLVSSAPGAR MAQGNVCDGY SGGHDLQNLT GNMASVPPLD Y // ID W5G2Z9_WHEAT Unreviewed; 757 AA. AC W5G2Z9; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.1; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.1; TRIAE_CS42_5DS_TGACv1_458035_AA1491540. DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3; TRIAE_CS42_5DS_TGACv1_458035_AA1491540. DR Gramene; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.1; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.1; TRIAE_CS42_5DS_TGACv1_458035_AA1491540. DR Gramene; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3; TRIAE_CS42_5DS_TGACv1_458035_AA1491540.3; TRIAE_CS42_5DS_TGACv1_458035_AA1491540. DR OMA; PTKFANF; -. DR OrthoDB; EOG093602X8; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 5. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 5. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 5. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 37 113 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 134 227 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 291 384 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 503 603 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 657 757 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 37 113 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 134 227 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 291 384 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 503 603 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 657 757 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 757 AA; 86233 MW; 31CE041E0E96D1E6 CRC64; MKTSFTSCNE CVVYHNWHRM GDWKKCFVKI VGEFVDVPIN LANYIRGQIP DKVKLEVPDG KTYNVQVSKE ENGLVFQSGW AEFARTYELV QGTILLFESS GSSCFEVRMF NQTGCEKELS CVPMNNTPCV NKMRFFMVMM GIGASNNGLT IPEKFANYVR GHISEEIKLE VPDGQTYSVQ VDNEQNELVL LSGWDTFVSA YELKEGDTLL FGYNGNSQFK VRIFNVNGFD KLLSCVVKNI TPCVQKRSAY HDNPLQSPRE RTGPNDHRNK ACTICIECVG RHYWHMEDHN WSFFKVVILS NFKDEMTIPP KFATNFRGRI SDEVKLEVPD GKIYNVQVAE EQHKLVLRSG WANFAGAYEL KEGDLLVFTY SGDSHFKVKI FKPSGCENEF SCVTMSCGSN VQERDICHDQ SLPTKKRCRN DGLTDSWKTT KKTPTDSPSQ KPSSELNTED VTSSKDIQEP RGSGVLQGSS ESRYILEMSC KLTSAQRARV DTFVKESQTG IEFYVTAMNE KTLSDGYLVI CKDYAVKHLP HQDQMIKLCH PQNSKTWDAN LAVISDGACT LSCILTAGWL GFVRDNNLRE GDICAFEVSK NDSRVMITVH PLKESGHPEY VITGHTKPAS QQKKKWTHPG YVVARSIKLT RKQKRKIEER IQAIRPEIKI FVSVLQRSSY SLYIEQGYAD CHLPREDQIM RLRLPGKNDT WKAKLYVGDK VNGKFNALRR GWKKLVKDNK LQEGDMCLFE LLKNEEELTM NVHIIKA // ID W5G3L6_WHEAT Unreviewed; 892 AA. AC W5G3L6; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.2; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.2; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.4; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.4; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.6; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.6; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR EnsemblPlants; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.7; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.7; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR Gramene; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.1; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR Gramene; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.2; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.2; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR Gramene; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.4; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.4; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR Gramene; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.6; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.6; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR Gramene; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.7; TRIAE_CS42_5DS_TGACv1_457945_AA1490960.7; TRIAE_CS42_5DS_TGACv1_457945_AA1490960. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 131 233 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 757 841 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 131 233 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 892 AA; 98375 MW; E2E636DB9EC3558A CRC64; MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS TNKEVDSQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI EPLTTFPMYP TAFPLRLKRP WASGLPSMHD MFNGVKNDDF SRYSSLMWLG DGDRGAQSLN FQGVGASPWL QPKMDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPSQQGH QVIQQSHQEM QQQLSSGCHR ISDVDSSMPG SESASQSQSS FYQQNLLEGN NDPSLHLHNG FRNFSSQDSS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSVQPKHE NVNHQSNMSH FAGTLAPQSA RDSSSVQAYG ANVDNQFLSS SFAFQDGMAG ARGGSSSGTV SMAIPLLRYS GEDLPPADTL ATSSCIGESG TFNSLDNMCG VNPSQDGTFV KVYKSGSPGR SLDITKFSSY YELRGELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSQQ EVQQMVRGGG EGLLSSAPGA RMAQGNVCDG YSGGHDLQNL TGNMASVPPL DY // ID W5GF22_WHEAT Unreviewed; 1135 AA. AC W5GF22; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1; TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1; TRIAE_CS42_6AS_TGACv1_486530_AA1562300. DR Gramene; TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1; TRIAE_CS42_6AS_TGACv1_486530_AA1562300.1; TRIAE_CS42_6AS_TGACv1_486530_AA1562300. DR OMA; CKINTEN; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1135 AA; 126076 MW; AD58F96882229424 CRC64; MAQSPASSAV AASAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP WLGEEVCIKD PQTQSATMPG LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ FNPPKLHQQM KPINDLSNAA LPLNQLSAIR NHQDQKQDQQ RQQQSSIQAI PLSQAQAQTN IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ LQQQQQQQQL NKLPGQLANL ASQQTQLSDQ ELHLQLLQKL QQQSLMSQSA VTLSRLPIIQ EQQNFLVDMQ QQLSNSHSLA QQQVMPQQDC RTSSLQTTQL PPPIQQEQQQ QQQQKPSQKQ VAPTYVSEAA FAQISSTSVI PKTGNATIVP GAAQSAVTEE IPSCSTSPST ANGNHLAQPT IGRNDHCKTS TEKVPHSIAQ MSILIPIEAV SVTPVTTKEL PKLNNGVKSS AITSKLPNVV SGLQNFMNNA LPTDNLETAS SATSLWPSQT DGLLHQGFAT SNFNQHQMFK DELPDVEIQG VDPSNSALFG MNNDGPLGFP METEGLLENA LDSVKYQNHF STDDENNYQM QKDARQEIST SMVSQSFGQS DMAFNSIDSA INDGALMNRS SWPPAAPPQR MRTFTKVYKR GAVGRSIDIG RFSGYGELNQ ALARMFGIEG QLEDRQRIGW KLVYTDHEDD VLLLGDDPWE EFVNCVKCIR ILSPQEVQKM SLDGDLGSNV LPNQACSSSD GGNTWKPRYE QNSGNPSIGP YDQFE // ID W5GQ72_WHEAT Unreviewed; 1070 AA. AC W5GQ72; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2; TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2; TRIAE_CS42_6BS_TGACv1_514811_AA1664620. DR Gramene; TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2; TRIAE_CS42_6BS_TGACv1_514811_AA1664620.2; TRIAE_CS42_6BS_TGACv1_514811_AA1664620. DR OMA; HCSMINT; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 71 173 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1070 AA; 119613 MW; 55E864228E53D697 CRC64; MQKDVEAHVP SYPNLPSKLI CLLHSVTLQA DPDTDEVYAQ MTLQPVNTYA KEALQLSELA LRQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPSL DFSLQPPCQE LQARDIHDNV WTFRHIFRGQ PKRHLLTTGW SLFVSGKKLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGVLAAAAHA SANTSPFTIF YNPRASPTEF VIPFAKYQKA MYSNQISLGM RFRMMCETEE LGTRRYMGTI TGISDLDPVR WKNSQWRSLQ VGWDESAAGE RRNRVSIWEI EPLAAPFFIC PQPFFGVKRP RQLDDESLEM ESLLKRAMPW LGEEVCIKDP QTQSVTMPGL SLVQWMNMNR QQSSSLASTA MQSEYYRSAS NPAMQNIGAA DLARQLYMQN HLLQQNSMQF NPPKLHQQMK PINDLSNAAL PLNQLGAIRN HQDQKQDQQR QQQSSIQAIP LSQAQPQTNN VQAQVILQNQ MQQQQQQKQP PPSPTQNQHG SSGQHLLQSH QLQDQNLQMQ QQQLLLHQQL QQQQQQQLNK LPGQLANLAS QQTQLSEQEL HLQLLQKLQQ QSLMSQSAVT LSRLPIIQEQ QNFLVDMQQQ LSNSHSLAQQ QVMPQQDCRT SSLQTTQLPP PIQQEQQQQK PSQKQVAPTY VSEAAFAQIS STSVIPKTGN TMIVPGAAQS AVTEEIPSCS TSPSTANGNH LAQPTIGRND HCKVSTEKVP HSIAQMSILT PIEAVSVTPV TTKELPKLNN GVKSSAITSK LPNVVSGLQN FMNNALPTDN LETASSATSL WPSQTDGLLH QGFATSNFNQ HQMFKDELPD VEIQGVDPSN SALFGMNNDG PLGFPMETEG LLENALDSVK YQNHFSTDDE NNYQMQKDAR QEISTSMVSQ SFGQSDMAFN SIDSAINDGA LMNRSSWPPA APPQRMRTFT KVYKRGAVGR SIDIGRFSGY GELNQALARM FGIEGQLEDR QRIGWKLVYT DHEDDVLLLG DDPWEEFVNC VKCIRILSPQ EVQKMSLDGD LGSNVLPNQA CSSSDGGNTW KPRYEQNSGN PSIGPYDQFE // ID W5H3M2_WHEAT Unreviewed; 1129 AA. AC W5H3M2; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1; TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1; TRIAE_CS42_6DS_TGACv1_543229_AA1737230. DR Gramene; TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1; TRIAE_CS42_6DS_TGACv1_543229_AA1737230.1; TRIAE_CS42_6DS_TGACv1_543229_AA1737230. DR OMA; TEEMPSC; -. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1129 AA; 125319 MW; 7BE1AB6F6F170A3B CRC64; MAQSPASSAV AAPAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP WLGEEICIKD PQTQSATMPG LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ FNPPKLHQQM KPINDLSNAA LPLNQLGAIR NHQDQKQDQQ RQQQSGIQAI PLSQAQAQTN IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ LQQQQQLNKL PGQLANLASQ QTQLSDQELH LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS SSQTTQLPPP IQQEQQQQKP SQKQVAPTYV SEAAFAQISS TSVIPKTGNS MIVPGAAQSA VTEEIPSCST SPSTANGNHL VQPTIGRNDH CKISTEKVPH SIAQMSILTP IEAVSVTPVT TKELPKLNNG VKSSAITSKL PNVVSGLQNF MNNALPTDNL ETASSATSLW PSQTDGLLHQ GFATSNFNQH QMFKDELPDV EIQGVDPSNS ALFGMNNDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYQMQKDARQ EISTSMVSQS FGQSDMAFNS IDSAINDGAL MNRSSWPPAA PPQRMRTFTK VYKRGAVGRS IDIGRFSGYG ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV KCIRILSPQE VQKMSLDGDL GSNVLPNQAC SSSDGGNTWK PRYEQNSGNP SIGPYDQFE // ID W5H5N5_WHEAT Unreviewed; 927 AA. AC W5H5N5; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1; TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1; TRIAE_CS42_6DS_TGACv1_542633_AA1725840. DR Gramene; TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1; TRIAE_CS42_6DS_TGACv1_542633_AA1725840.1; TRIAE_CS42_6DS_TGACv1_542633_AA1725840. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 927 AA; 102497 MW; 07A32071EB357EC0 CRC64; MNLSPSAAAG GGLPDQPASP EVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE QVSASTNKEM ESQIPNYPNL PAQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF LPAELGNASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD LHGNEWKFRH IFRGQPKRHL LTTGWSVFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR ISVGMRFRML FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT YPMYSSPFPM RLKRPWPTGL PSLYGGKEDD LTSSLMWLRD GANPGFQSFN FGGLGMSPWM QPRMDSSLLG LQPDMYQAMS AAAFQNTTKQ VSPTLLQFQQ PQNIAGRSAL LSSQILQQVQ PQFQEMHHQN INDSAIQGHN QSEYLQQQLQ RCQSFNGQKS PPPQQQESHH QHQQQQSQCM QTPQHQQMQE QKHSPDFQCV PNGLLVFSQL SSTNQSPPST LQTVSAFSQQ QNLQDRNISS LAPSNVPSMH DTLRPFPSEA GSNLQGVPRT TPVPVSDPWS SKRVAMESVI PSSSHVNSSH MQQLDSEPSN IPQSSSLAPL PGRECLVDQD GNSDNQNHLL FGVNIDSQSL LMQGGIPSLQ EDNGCIASLQ DDNDSSTIPY STCNFLSPSQ NDFPLNEALA SSGCLDESGY ASFSENSDHV NQPTAAFVKV YKSGAFGRLL DITKFSNYHE LRSEVGRLFG LEGQLEDPAR SGWQLVFVDR EDDILLVGDD PWQEFVNSVS CIKILTPQEV QQMGKQGIDL LSSAPARRLG NSCDNYAGRQ ESRSLSTVIA SVGSVEF // ID W5HWY0_WHEAT Unreviewed; 1038 AA. AC W5HWY0; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 28. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12; TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12; TRIAE_CS42_7BS_TGACv1_591833_AA1923070. DR Gramene; TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12; TRIAE_CS42_7BS_TGACv1_591833_AA1923070.12; TRIAE_CS42_7BS_TGACv1_591833_AA1923070. DR OrthoDB; EOG093601LK; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 74 176 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1038 AA; 115881 MW; 87A4C1D46BC0AE4C CRC64; MRKDADAQIP SYPNLPSKLI CILHSVTMQS DPDTDEVYAR MTLQPVSNVT QCDKEILLAS ELALKQNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PRLDFSLQPP AQELQARDLH DTIWTFRHIF RGQPKRHLLT TGWSLFISGK RLLAGDSVLF IRDAKQQLLL GIRRANRQPT NLSSSVLSSD SMHIGVLAAA AHAAANNSQF TIFYNPRASP SEFVIPFAKY QKAVYGNQLS LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NIQVAWDEAA PSERRTRVSL WDIEPVIAPF FIYPTPLFTA KCARQPGMID DDTSGMDNVF KRTMPWLGEE ICKKDMNTQN SIVPGLNLAQ SLQWMNMQQN LSLAGTVMQP ELLNSLAGKH VQNLSAADIS RQISFQPQFL QQNNIQFSTS LLPQQNQQAE QLAKAIGTPN QLGNIMVPQK VDQDCNSDQK QHTVTQSVQG SQANLNVTQP EHVVQAQFQQ PRVILQAQLQ QQQPLVQSHT VFQGGLQQIQ VLQQQQPHLQ QQLQQQQPQH HQQVQHSVQE QQQMKTQPVH VSSDVNMNTQ LSDHQMKLQL LKALHSQQHL TMEQQKMLFD LQQQVVNSQS DPQQCVQGAT QTVGFHNRNT IQYATQQKAQ SHQPVEDSPR GTIPVAKSDV VTSMGASSLN VAGRMQSVRT DNVPSSSTSP SPSTATNHVL LQSIPSSSKN QSLPTAAKTS QSSVVLGPTI EQEMKSYQSV KPTIMIPKMI EQGPATERDY INNPHMDYLD TSSSATSVCL SQADGSLQQN FPSSSFDQHQ LLRDTAPDSE FEISDPTNNL LFGVNIDGQL GLPLNADALL ANSIENDKFM DEMAGNGISN YISSKDSQQE LSSSMISHSL GVADMGFNSI DSAINDPSFL NRNSRAPAPA HQRMRTYTKV HKRGAVGRSI DMNRYSGYDE LKHDIARMFG IEGQLGDQSR VGWKLVYEDH EKDVLLVGDD PWEDFLNCVR CIRILSPQEE MQMRLVGDFG DGFLPNQACS SSDGGQPW // ID W5I372_WHEAT Unreviewed; 817 AA. AC W5I372; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 05-JUL-2017, entry version 29. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4; TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4; TRIAE_CS42_7DL_TGACv1_602960_AA1972710. DR Gramene; TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4; TRIAE_CS42_7DL_TGACv1_602960_AA1972710.4; TRIAE_CS42_7DL_TGACv1_602960_AA1972710. DR OMA; SLCHQQS; -. DR OrthoDB; EOG093601Q8; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 44 146 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 817 AA; 90495 MW; 6360D693BB7DC15A CRC64; MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTMQPP AQELFAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRATRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPTPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GAGMNPWMQP RLDASLLGLQ PDIYQTMAAA AFQDPTKMSP TMLQFQQPQN MVGRATPLLQ SQILQQMQPQ FQQQSYLQNM NGTTIQGQAH SEFLQQQLQR CQSFNEQKPQ LLQQQESNQQ QSQGMQVPQH QHMQQQKNMA NYQPAYSQLS PGPQSSPAAL QTASPFSQPQ SFSDTNMSSL SPSGAPTMHN TLGPFSSETA SHLSMSRPTA VPVPDSWSSK RVAVESLIPS RPQSTPHMEQ LSSTPPSIPQ SSALAPLPGR GCLVDQDGSS DPQNHLLFGV NIDSHSLLMQ GGLHDENDST AIPYSTSNFL SPSQHDFSLD QTLNSSGCLD ESGYVPCSHT PDQVNQPPAT FVKVYKSGTY GRSLDITKFS NYHELRRDLG RLFGLEGQLE DPMRSGWQLV FVDREEDVLL VGDDPWQEFV NSVSCIKILS PQEVQQMGKQ GLELLSSAPG KRLGGGGGSS CDDYASRQES RSLSTGIASV GSVEVEF // ID W5I9K8_WHEAT Unreviewed; 233 AA. AC W5I9K8; DT 19-MAR-2014, integrated into UniProtKB/TrEMBL. DT 19-MAR-2014, sequence version 1. DT 07-JUN-2017, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1}; OS Triticum aestivum (Wheat). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum. OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1, ECO:0000313|Proteomes:UP000019116}; RN [1] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1, ECO:0000313|Proteomes:UP000019116} RP NUCLEOTIDE SEQUENCE. RC STRAIN=cv. Chinese Spring RC {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1, RC ECO:0000313|Proteomes:UP000019116}; RX PubMed=23192148; DOI=10.1038/nature11650; RA Brenchley R., Spannagl M., Pfeifer M., Barker G.L., D'Amore R., RA Allen A.M., McKenzie N., Kramer M., Kerhornou A., Bolser D., Kay S., RA Waite D., Trick M., Bancroft I., Gu Y., Huo N., Luo M.C., Sehgal S., RA Gill B., Kianian S., Anderson O., Kersey P., Dvorak J., McCombie W.R., RA Hall A., Mayer K.F., Edwards K.J., Bevan M.W., Hall N.; RT "Analysis of the bread wheat genome using whole-genome shotgun RT sequencing."; RL Nature 491:705-710(2012). RN [2] {ECO:0000313|EnsemblPlants:TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1} RP IDENTIFICATION. RG EnsemblPlants; RL Submitted (OCT-2016) to UniProtKB. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EnsemblPlants; TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1; TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1; TRIAE_CS42_7DS_TGACv1_621393_AA2013970. DR Gramene; TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1; TRIAE_CS42_7DS_TGACv1_621393_AA2013970.1; TRIAE_CS42_7DS_TGACv1_621393_AA2013970. DR OMA; HLPKHDE; -. DR OrthoDB; EOG09360M6G; -. DR Proteomes; UP000019116; Unplaced. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000019116}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000019116}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DNA_BIND 137 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 233 AA; 26861 MW; 63CF09A8719B4FB4 CRC64; MAGAIAYEEQ RRRQVEENKR KLEELKLHHL SAAVREAATP KPSPTKSLKR KRVPREAGED TPIRRSGRVA SLPEQPKYRF EDVFHVLEKK IRRGRRTTTS TRSDLINRVY ATDKAREYAT TMAEELQAKL GSGYPSFVKP MTQSHVTGGF WLGLPLPFCR KHLPKRDERL TLKDEQGVES ETLYLALKNG LSAGWRGFAI QHNLVDGDCL VFELINRTTF KVYIIRQSSY YER // ID W9QDA0_9ROSA Unreviewed; 382 AA. AC W9QDA0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2/ERF and B3 domain-containing transcription factor {ECO:0000313|EMBL:EXB28999.1}; GN ORFNames=L484_018415 {ECO:0000313|EMBL:EXB28999.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB28999.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343428; EXB28999.1; -; Genomic_DNA. DR RefSeq; XP_010087389.1; XM_010089087.1. DR GeneID; 21401385; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 63 118 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 193 302 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 63 118 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 193 302 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 382 AA; 44424 MW; 57C104566FBFEC28 CRC64; MEDEYSSSMI SSAKTIINVP AMETSDSTNT NIYAIHARNN KRPRLEYHHE IDTNNIIASS SAKFKGVVPQ QNGHWGAQIY ANHQRIWLGT FKSEKAAAMA YDSAAIKLRS GDSQRNFPWT SLTIQEPDFQ SRHTIKMVLN MIKDSSYQSK FEEFVRTRSQ SKEVFIDKGN HDQHLNKKIK GHGDAQFLTR QLFQKELTPS DVGKLNRLVI PKKFAVKYFP YINEDINHVE GNGAVEDIEL VFYDKNMRPW RFRYCYWKSS QSFVFTRGWN RFVKENSLKA NDVITFYACE HYCRGTGILR EVNGQSFCLI DVTHNGVNVE SKKCLSNDKE EANNYYHCEK HIMKVAWKQN FYQGSDQFKY NEEDVSNNLE EKGIRLFGVH IK // ID W9QGY9_9ROSA Unreviewed; 309 AA. AC W9QGY9; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXB37252.1}; GN ORFNames=L484_020311 {ECO:0000313|EMBL:EXB37252.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB37252.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343608; EXB37252.1; -; Genomic_DNA. DR RefSeq; XP_010089025.1; XM_010090723.1. DR GeneID; 21403214; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 72 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 252 309 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 72 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 252 309 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 309 AA; 34854 MW; DCBC1A506DC12668 CRC64; MTNYGKTISD PVIITTPSGA KWHMGLTKYD GDIWLCKGWP EFVQHYSLEN GQALFFKYKG CSQFDVVIIG VTGLEIDYSI TNSTQVIESD IDDGDNDDDD GDGGSPCLKE EEEPTTPFPQ HARSPERVKR NIGDTHTQCG CFSSFNWIIP VAFVTHFDGK IPRRTCCQKS TTAVTASRKR IMFLNYHREN QNKSSEGEQS KEDEVYDQGH SQNRHSSRIP TIRLTPCSNG KVCASEVRAI QGANKYIPEY PFFKCVMSKA YVMKGFLGIP TSFFKMIMNK LERGSTVMLQ HNGRPWPVKF CVDDRPTAS // ID W9QIC0_9ROSA Unreviewed; 122 AA. AC W9QIC0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB38067.1}; GN ORFNames=L484_020988 {ECO:0000313|EMBL:EXB38067.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38067.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343679; EXB38067.1; -; Genomic_DNA. DR RefSeq; XP_010089596.1; XM_010091294.1. DR GeneID; 21403856; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 98 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 122 AA; 14348 MW; 8725884AD7C1A045 CRC64; MAGLPKWLTE SDVRAKLSVP KEWWDIIIRP LFGDELDRRR EIELWAVDGV GMFWEFRCAV RQKGRYKKPV LQSDGWLKFV NYKGLGVGDM VILDTVENQF RGTRFLLRAC KYDADGQCWF DV // ID W9QIC6_9ROSA Unreviewed; 122 AA. AC W9QIC6; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB38072.1}; GN ORFNames=L484_020993 {ECO:0000313|EMBL:EXB38072.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38072.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343679; EXB38072.1; -; Genomic_DNA. DR RefSeq; XP_010089601.1; XM_010091299.1. DR GeneID; 21403861; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 9 98 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 122 AA; 14456 MW; 5CF00F9A64475DBE CRC64; MAAGLPKWLT ESDVKSKLSV PRDWWEIIRP LFGEELDRRH EIELWAVDGV GMFWEFRCAV RQKGRYKKPV LQSDGWLKFV NYKGLEVGDI VILETVENRF RGTRFLLRAL KYHAGGHYWF DV // ID W9QJE4_9ROSA Unreviewed; 623 AA. AC W9QJE4; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXB38619.1}; GN ORFNames=L484_014433 {ECO:0000313|EMBL:EXB38619.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38619.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343700; EXB38619.1; -; Genomic_DNA. DR RefSeq; XP_010089923.1; XM_010091621.1. DR GeneID; 21397573; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 265 361 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 499 595 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 15 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 265 361 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 499 595 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 623 AA; 69480 MW; C7A87B8CCA650877 CRC64; MEIVEARKMS SGRRPHFFAF YSANLSSERL KIPTKFMKRM EGKTSGSVSL EGPSGNTWQV DLVQQNGDLF LHYGWPAFVR DHFVECGDFL IFRYDGDLHF TVQVFDQSAC EKEAAFLSEC NQDISDKNLR QKRERGDCMS SSDKIVQGVL KKMRESSSQL YSERIHLCGE KVCHCDGVLA TKTCEQANFS IDSHQCASSP KSYALPSQSE NCNEKPALDI VLFKTKAIQN ISGKGDSFNV NGRVCVQMTA AHEAAQSFTS CFPFFMRTMK SFNVSGSYTL NIPYQFSMAH LPNCKVKIVL QNLKGESWTV NSVPSTRVHT SHTLCGGWMA FVRYNDIKIG DICIFELVGE CEFRVHILGV GKEGVDYQSG KVSSNRLGAG HGVTSHKSFK AVPKKMRGNS SKVHMKSIKM LDVSDKKVSK KLLEAAFPND AKKHGNTSKA LTKVALCSQS KAVNKKLVVH RSRGIEDELG SQARSGLRMM LALDEERVAR SFTSCFPNFV KIMKKFNISG SYTLKIPYQF SIAHLPNYKT EVVLRNSKGE CWTVNSVPDS KGRLMHTFCG GWMAFVRAND VKIGDICIFE LVGKFEMRVH ISTVGQRGLD YQGGEVTPNE LALISAANNR LSL // ID W9QJR0_9ROSA Unreviewed; 691 AA. AC W9QJR0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_008052 {ECO:0000313|EMBL:EXB38688.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38688.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343701; EXB38688.1; -; Genomic_DNA. DR RefSeq; XP_010089974.1; XM_010091672.1. DR GeneID; 21391437; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 113 215 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 579 659 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 113 215 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 75568 MW; F6C73984081AC5C0 CRC64; MREVVEKSLD PQLWQACAGG MVNIPPMNSK VFYFPQGHAE HAQAHVDFPA SMRIPSFVLC RVASLKFMAD PETDEVFAKM RLLPLGNNEL DSDDDKVLGS ADGSENPEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVVAKDVHG GLWKFRHIYR GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RTETGDICVG IRRAKRGIGG GPEPPSGWNN GYGGFSVFLR EDESKMGRNG CGNSSPGGGN MRGTGRVRPE AVVEAAVRAA NGQPFEVVYY PRVSTPEFCV KASAVKGAMR IQWCSGMRFK MAFETEDSSR ISWFMGTINS VHVTWDEPDL LHNVKRVNPW LIESVSNMPI IPLSSFSPPR KKLRLPQHPD FTLDGQFLVP SFLGNPLGPS SPMCYLPDNT PAGIQGARHA LFGISLSDLH LNNKLQSGLF HSSFQQLNQH SRISNEIITG NANRNESLSS LLTMGNSTQN LEKSDSVKLK RHQFVLFGQP ILTEQQISNN GSSDTVSEVS NGKSLTDGNP EGAKFHSNGS GSLPEQQASS NTGISWLKGL QATEFGLDTG HCKVFMESED VGRVLDLSVL GSYEELYRRL ANMFGIERSE MLSHVLYHDA TGAVKRTGDE PFSDFMKTAK RLTILTDSGS KNMGRARITG MRNAENGLGA SNKTGPLSIF A // ID W9QKH5_9ROSA Unreviewed; 575 AA. AC W9QKH5; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 18. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXB29188.1}; GN ORFNames=L484_019719 {ECO:0000313|EMBL:EXB29188.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB29188.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343429; EXB29188.1; -; Genomic_DNA. DR RefSeq; XP_010087507.1; XM_010089205.1. DR GeneID; 21402646; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 129 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. FT DOMAIN 338 433 TF-B3 DNA-binding. FT {ECO:0000259|SMART:SM01019}. SQ SEQUENCE 575 AA; 65262 MW; 30B4673E15CB0B8B CRC64; MVPNVKNGAN PDSPVAKPKL HFCATMFQLP IPEHKLKQNH ENHALILHLD QMIPPKSAMI FGEELYESVT LTVPNGQAWL VGLKKDGDQI WLHDGLHEFL DYYSVQLLYN LHFRYEGNSV FCVYICDASG SEIDYPCDGP SRGVEPNFGK HNEKGNRGDD SVEIWDIKPP ISDHGLFVNH KEDRRGDECV EILDVKPSIS PGSSQGNPFS GDVEQWSPSK RRDFLCQQKI CRPSKRCRNA ASMDSPLNGD ACHTRSRMLE KEGQVNLKEL GNVNTSETGK AKENMKPHPP SLLVKDEGDV EMHVPKSLRY AKSRLVISKE TEKAVHIACM HKLENPSFMV ILRPHNFSEK HVDLPTEFVK RHLSQCSEDM QLQVHNGECK WSVRCFYRSS RVKDGSRTMK KIGKGWRLFS SDNNLQASNV SHNGAHTCGF HNEQFRACKS VLALSKLRAK DRSFAFFELA LICSSAGQNG PTISALCCVR RENAIVKHMQ MIPLKSSMML GEKLSEVANG KSWQVRVNKF REKIWPCDGL KEFIEYYKIH YASISQFTYL GSSSIRVCIF DVMDSEINYL MELKQ // ID W9QPD0_9ROSA Unreviewed; 1072 AA. AC W9QPD0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXB37229.1}; GN ORFNames=L484_020288 {ECO:0000313|EMBL:EXB37229.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB37229.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343608; EXB37229.1; -; Genomic_DNA. DR RefSeq; XP_010089002.1; XM_010090700.1. DR GeneID; 21403191; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 6. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 5. DR SUPFAM; SSF101936; SSF101936; 6. DR PROSITE; PS50863; B3; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 204 314 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 427 494 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 560 653 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 809 911 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 981 1058 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 204 314 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 427 494 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 560 653 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 809 911 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 981 1058 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1072 AA; 123420 MW; 225074EE5BFBF22D CRC64; MACTGPREND VQKKFSPPSP HFFKIIFIDT LRDNKLQIPN RIVNKCGGTL SIPVLLKLPC GLKWKYEGNS QFHVLIFDKS TTEIDYPSNP NWIVKHNIGR SQPQEVKEEE DDDSVEILES FSPFPKRREK SQLTCSWPRK RMKTGPDHDE TQRGSSHPRS KGKFRMQILE ANTSQEVTMR PSSSGDIRAS EAANKFFSTN PYFQVSLQSS HFKPTNSRVR VPTAFARTYY EERTQNCESS KDSETIYDKL WKDNIRSSNY YDTEWCKMAY GIGDIWLCKG WPEFVQHFSL ENGQALFFKY KGCSQFDVVI IGVTGLEIDY SITNSTQVIE SDIDDGDNDD DDGDGGSPCL KEEEEPTTPF PQHARTKSTH DGEPSVLGRK QRSLTMAEKA KALSRTEDFM SQSPYFKAVV RTDFWMECLF DITDDATLYV SHERVWIVKL NARKIAMRSI RVSFLRKGWK DFAVDNDLKV DDVCIFELVN QRKMIFKVTI SRDGDFQNSQ QSHAGKSAVN QDHPKKSLSA RDKTPSTSYK AETCNMRPSM NHVRRKDPNA IAKRKSMLNY AKEIKRQPRS NMCSRLIPTK FVKKYGETLS NSVFVKLPSG SEWKMELRKS NGRFCLQKGW PEFVKYYSIG FGHFLVFRYE GNSRFHACIF DTTTVEIEYP LIRAHSDGPK IEEIKDDGSV EVLEDLSPYP RKRKSSPLPC SQPHKKFRTS PIGETEIKGT RSNERILKNS MRNGDLHHSK SMRGMRKFFL LSFKKLIFWY LNKLLFPCRV VFLYCLFSFI LFPVSAEDGN GDKSIMPRWR LSEVKSFTYK VVIKPSHVGK YFDMCLPRKF ADGFLKNKCL DAVLKLSDGG TWPIRFRSRR CDDERRRGAR FEKPSWEKFA RDNNLKVADT CVFELINGNE MSFKVSILKA DLDSHPSHGK FWQGQVTRVL KFSGDSRATD AASRFSSKNP FFKKLITSSY LHTQDQQITL KFKLSCCVQR LPNYFGRSYF GKKTQNITLQ TGKNSWSVTI VYNAPHSYLF SRGWPTFARE NSLRPEHALL RPTLRKGRLG KARVGQPEWA AVDVGVGSVV EC // ID W9QPF1_9ROSA Unreviewed; 594 AA. AC W9QPF1; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXB37249.1}; GN ORFNames=L484_020308 {ECO:0000313|EMBL:EXB37249.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB37249.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343608; EXB37249.1; -; Genomic_DNA. DR RefSeq; XP_010089022.1; XM_010090720.1. DR GeneID; 21403211; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 4. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; Membrane {ECO:0000256|SAM:Phobius}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 160 180 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 1 49 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 205 307 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 515 594 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 49 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 205 307 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 515 594 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 594 AA; 68932 MW; B263F71F18B06754 CRC64; MELRKSNGRF CLQKGWPEFV KYYSIGFGHF LVFRYEGNSR FHACIFDTTT VEIEYPLIRA HSDGPKIEEI KDDGSVEVLE DLSPYPRKRK SSPLPCSQPH KKFRTSPIGE TEIKGTRSNE RILKNSMRNG DLHHSKSMRG MRKFFLLSFK KLIFWYLNKL LFPCRVVFLY CLFSFILFPV SAEDGKGDKS IMPRWRLSEV KSFTYKVVIK PSHVGKYFDM CLPRKFADGF LKNKCLDAVL KLSDGGTWPI RFRSRRCDDE RRRGARFEKP SWEKFARDNN LKVADTCVFE LINGNEMSFK VSILKADLDS HPSHDQTNSL KPKRNVKVKT ECDCTSKHQE ETKVEPGKFW QGQVTCVPKF SGDSRATEAA SRFSSKNPFF KKLITSSYLH TQSMPSSGPH CGRGDLGRGD LERPEWAIQS GPPWTSASEA WWNVKILIES HIAKFVRRQI EMGRKPRPLK RYPSIFKVLI DDFSNKLMIP VAFVKHFDGK IPRRCLLWSP AERFWNVNVE NFGRIPAIRL TRVRKEKYAQ GIPTSFFKMY MNKLERGSTV MLQHKGRSWP VKFCVDERPT ARLSTGWSKF VNANAIKLRD VCVF // ID W9QQW2_9ROSA Unreviewed; 120 AA. AC W9QQW2; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB38064.1}; GN ORFNames=L484_020985 {ECO:0000313|EMBL:EXB38064.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38064.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343679; EXB38064.1; -; Genomic_DNA. DR RefSeq; XP_010089593.1; XM_010091291.1. DR GeneID; 21403853; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 7 97 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 120 AA; 14177 MW; 3BE8A860316B075E CRC64; MAGLPIKRLT ESDVNSRLSV PKEWWDVIRP LFGEEDRRRE IEVWAVDGVG MFWEFRCAVR QKGPYKKPVL QSEGWLKFVN YKRLRAGDVV ILETVENQFR GTRFLLRALK CHADGHWFDV // ID W9QR34_9ROSA Unreviewed; 1144 AA. AC W9QR34; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_004087 {ECO:0000313|EMBL:EXB38182.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38182.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343683; EXB38182.1; -; Genomic_DNA. DR RefSeq; XP_010089663.1; XM_010091361.1. DR GeneID; 21387594; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 126 228 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1017 1110 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 126 228 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1144 AA; 127696 MW; E42557B8D6DEB8E2 CRC64; MKAPPNGFLA TSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE ADFIPNYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKHDRDALL ASDMGLKQNR QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFTMQ PPAQELVARD LHDNSWTFRH IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRATRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY MGTITGISDL DPLRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP FYICPPPFFR PKFLKQPGMP DDESEIENAF KRAMPWLGDD FGMKDPASSI FPGLSLVQWM NMQQNNQFSA SQSGFFPSMV SPTALHNNLG ADDPSKLLNF QSPVMSVPSA HLNKATPSNQ VNQVQQPNVA WPQQQQLHQL LQNPTNQQQQ SCSQQQQLQQ LLQTTPPNQQ LQNHQQQQQQ LPQQLQRPQQ QPHQEPPQLQ QNQQLQQQQP QPPQHQQQQQ QQQQQQQICQ PPLVNNGMVV PNQIPSQNLQ QPVMFSQQQL LAGNTQSQQS IHSSKNSIQL TSLPMDSQFQ QQMEMQPSLL QKQQQQQAVH LQQNPLQFLQ QNLSQGAQPQ PQSQQSSHQG LSEQHLRLQL LQKFQQQQQQ QQQQLFSPPS SLLQSQLLQQ QEGNHQQLQS SPLSQHQQPL NSNSFSTEKL LNSHNFSTSA LTHSQHVPTS QPQSQHKPLI TIRASSGLTD GDAPSCSTSP STNNCQISPL NMLNRNQQGP AMFVGDAVME PPSNLVQDLQ GKSDIRIKHE LPSSKGPDHL KYKGTITDQL EASSSGTSYI DASTIQQSFP LPAFCLDGDA QSNPRNNLSF AANIDGLAPD TMLSRGYDSQ KDLQNLLANC GGAPRDIETE LSTAAISSQS FGVPNIPFKP GCSSDVALND AGVLGNGLWA NQTQRIRTYT KVQKRGSVGR CIDVTRYKGY DELRHDLARM FGIEGQLEDP QRTDWKLVYV DHENDILLVG DDPWQEFVSC VQSIKILSSA EVQQMSLDGD LGQVPVPNQA CSGTDSGNAW RGQYDDNSAA SFNR // ID W9QS04_9ROSA Unreviewed; 321 AA. AC W9QS04; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Putative B3 domain-containing protein REM15 {ECO:0000313|EMBL:EXB37250.1}; GN ORFNames=L484_020309 {ECO:0000313|EMBL:EXB37250.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB37250.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343608; EXB37250.1; -; Genomic_DNA. DR RefSeq; XP_010089023.1; XM_010090721.1. DR GeneID; 21403212; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 115 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 187 247 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 115 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 187 247 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 321 AA; 35985 MW; 36F628DDB53EEA13 CRC64; MACSRRENDL QTKISPRFFK IILEDTLRDN TLNVPYLFAT KYLIDERGHV ILKVHGRTWS VNYSFGIYGI NNKAKFEYGW KVFAKDNDLK VGDVCVFVLT KSIEKLFEVS IFRENGRANS SVSPAVDNAA TCLEGVPDNG NARARAPEMA GSCFQSENPS FTVSMQASYT RLKSQFEGDA VLWVSDGRSW SVLYKVREKL KQSPVTNFCH GWFAFARDNR LEEGDRCTFE VTNRNDISFK VSIVKANGCL PKASEKATKP ANLKRNASVK FKSTSMVILM DPIIKEEQEE TAVDPEGSEE NTALIIAQRP SSSRASRASK A // ID W9QT99_9ROSA Unreviewed; 902 AA. AC W9QT99; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_011422 {ECO:0000313|EMBL:EXB39505.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB39505.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343725; EXB39505.1; -; Genomic_DNA. DR RefSeq; XP_010090447.1; XM_010092145.1. DR GeneID; 21394681; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 229 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 769 853 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 127 229 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 902 AA; 99612 MW; 3A226B8FA415A709 CRC64; MRLSSVGFSP QPQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPAFHGIKED DLGMNSPLMW LRGDYGDRGL QAMNFQGIGV TPWMQPRVDA SMLGLQPDMY QAMAAAALQE MRAVDPSKPI PTSLLQFQQT QNLPSRSASL MQPQMLHQSQ TQQPFLQGVP ENQPQPQPQT PPHLLQQQLQ HQHSFNNQQL QQQQPQPSQQ QQLVDHQQIP SVVSPMSHYL SASQSQSPSL QAISSMCQQP NFSDSNGTAV TSSIVSPLHS ILGSFPPPDE ASHLLNLPRS NLSSAVWPSK RAAVEPLIAA GPTQCALPQV EQLGPPQTNL SPNSVSLPPF PGRECAIDQE GNTDPQSHLL FGVNIEPSSL LMQNGISNLR GVGSESDSTT IPFPSSSYMS TTGTNFSLNP AAIAPSSCID ESGFLQSPEN AGQGNNPNRT FVKVHKSGSF GRSLDITKFS SYNELRGELA RMFGLEGELE DPVRSGWQLV FVDRENDVLL LGDDPWPEFV NSVWCIKILS PQEVQQMGKR GLELLNSVSI QRLANNSCDD YPSCEDSRNL SSGITSVGSL DY // ID W9QTG0_9ROSA Unreviewed; 121 AA. AC W9QTG0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB38070.1}; GN ORFNames=L484_020991 {ECO:0000313|EMBL:EXB38070.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38070.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343679; EXB38070.1; -; Genomic_DNA. DR RefSeq; XP_010089599.1; XM_010091297.1. DR GeneID; 21403859; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 15 97 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 121 AA; 14520 MW; 83885D928F7F66E1 CRC64; MAGLPKWMTE CDVRSRLSVP KEWWEIIRPL FGEELDRRHE IELWAVDGVG MFWEFRCAVR QKGRYKKPVL QSEGWLKFVN YKGLRAGDVV ILETVENQFR GTRFLLRALK YHAEGHYWYD V // ID W9QTI0_9ROSA Unreviewed; 378 AA. AC W9QTI0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 23. DE SubName: Full=AP2/ERF and B3 domain-containing transcription factor RAV1 {ECO:0000313|EMBL:EXB53997.1}; GN ORFNames=L484_022972 {ECO:0000313|EMBL:EXB53997.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB53997.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344145; EXB53997.1; -; Genomic_DNA. DR RefSeq; XP_010093403.1; XM_010095101.1. DR GeneID; 21405755; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF00847; AP2; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 76 131 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 207 310 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 76 131 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 207 310 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 378 AA; 41332 MW; 9E8DCD2A2DCFD86E CRC64; MDGNSSTDES TTTESFTLSA SPAATPTPFK SPPAAESTLC RVGSGASSVV VDSEMITNAI NGGADAESGR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAQR FRGRDAVTNF KPLSETTEED EIESVFLNSH SKAEIVDMLR KHTYNDELEQ SKRNSFGIDG NGNRKPSRTG LLFGSDLTAS MAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSANT CKGVLLNFED VGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDIV SFQRSTGPDK QLYIDWKARD VDSGSAGGAV GPVQMVRLFG VNIFKLPGSE MVEGIGIGIG GGCNGKRTRD MELLELECSK KPRIIGAL // ID W9QUC6_9ROSA Unreviewed; 404 AA. AC W9QUC6; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=B3 domain-containing protein REM16 {ECO:0000313|EMBL:EXB38618.1}; GN ORFNames=L484_014432 {ECO:0000313|EMBL:EXB38618.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38618.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343700; EXB38618.1; -; Genomic_DNA. DR RefSeq; XP_010089922.1; XM_010091620.1. DR GeneID; 21397572; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 108 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 270 368 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 108 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 270 368 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 404 AA; 46416 MW; 6B6A67A315A6E0F7 CRC64; MEGSKWEEYI YWAHFKHIHF SQFLLDDFHQ QLAIPKKFSE KKKLPDSVTL KGPGGGMWKV GLTTVGNSMF FKHGWQEFVN DHFLVENDLL VFRYNGESLF EVLIFDGHSL CEKEVTYFVK KHENSKTDNG GRLTKRKLRE TSCDEINNAC SENVVCASPE KSRDDDIIVL PSEEQVITLS TNNKGRKKLT AVRPLRSCRS ATINESSPCD VQVQVQVQPV TKSDAEHTPT RRRGYSMQYV SNRRPITEDE KDRAMKLAEA EISESNNEGL LVVMKPTYVY KRFYVFLPSD WVAKYISLEN QDLFLRFGER EWRTRFNYNQ VRSCAGLTSG WKHFAVDNNL EHFDVCVFEP GSPVNNSFCL DVKIFRVVPE VALLTPVGSP TSGKRGRKSS KIVEIENDEL LEAD // ID W9QUH2_9ROSA Unreviewed; 622 AA. AC W9QUH2; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_008055 {ECO:0000313|EMBL:EXB38691.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB38691.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343701; EXB38691.1; -; Genomic_DNA. DR RefSeq; XP_010089977.1; XM_010091675.1. DR GeneID; 21391440; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 107 209 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 107 209 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 622 AA; 67923 MW; F1EF700F1FF8E908 CRC64; MKTKILDALV WQALAGRMAQ VPRVNSKVFY CPQGHAEHAF ATADFAASLG VPPLLLCRVS AVELMVDLET EEVFAKISLV PLGQEDGLPD GDDDNGIPAA AEGSCFVGKV LTQSDSNNGG GFSVPKYLAE TVFPKLDYLT DSPCQQLSVR DVHGEVWEFK HIYRGSPRRH LLTTGWSVFV NKRKLVAGDS VVFVRDKDGN ISVGIKRGRR TYCNSNNNNN GSAKGVVSPQ DVLEAVTLAA NGKPFDVVYY PRDGAAEFCV RASAVRAALG ISWSIGMRFK MPSEDDYSSR ISWSLGTIAS VSPADPIHWP NSPWRFLQVS WDEPDLKQNV QRVNPWLIEL ISNAPMVNFS SYSPPGKKLR LAQQSDFTLD SQYPALSSLG NTLGPSNPLC YPPDNTPVGI QGARHVLFGV PLLDLQVNDP LQLRIFPPNV QLSNQLSTSP NSVIAGQTHD NESLSSLLTV GNSSPSLEKS DGVKTHHFIL FGHPIVTEQQ GSPSSSGDAV SHDFGKSPVD GNTDREKYIP NGSGPTLQGT EFGLDTGRCK VFMESEDAGW TLDLSVLGSY EELYRSLADL SGIERSEMLI RVLYYDATGA PKRTGDEPFR HCSAFHFFHP LFFILRCNVE SA // ID W9QW98_9ROSA Unreviewed; 328 AA. AC W9QW98; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=Putative B3 domain-containing protein {ECO:0000313|EMBL:EXB56029.1}; GN ORFNames=L484_018818 {ECO:0000313|EMBL:EXB56029.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB56029.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344275; EXB56029.1; -; Genomic_DNA. DR RefSeq; XP_010094448.1; XM_010096146.1. DR GeneID; 21401779; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 143 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 328 AA; 37441 MW; A9B0B497A0D6A00C CRC64; MLTPKSNDNA NTYEEARKQR LEENKKRFED LGIASVSKGL TELTNSEKKS QQGQLPKPRS KTAFAVEPRR STRVRNPVQT YRYDVDMELP FSRKKSRSKS SSWASYLARP IEEVKLASYE ERTYAFKAAE ELQKNLKSDN PCFVKSMVRS HVYSCFWLGL PLRFCKDHLP KKTVDMELEN EDGKVYDAVY IGERSGLSGG WRAFALEHKL DDGDALVFEL VEPCRFKIYI VRVSMLSSQE CNTNMNDKEN NTGAKKKPKR TMKSGDALAK NDGLVNSDEV KQDASLVSKG VEKDRGDSKT SETCRKTEPK CLPRRSTRKP TPKRAQQK // ID W9QX63_9ROSA Unreviewed; 103 AA. AC W9QX63; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB46712.1}; GN ORFNames=L484_001540 {ECO:0000313|EMBL:EXB46712.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB46712.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343928; EXB46712.1; -; Genomic_DNA. DR RefSeq; XP_010091882.1; XM_010093580.1. DR GeneID; 21385138; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 95 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 95 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 103 AA; 11909 MW; 1033F1ABB18F7DAE CRC64; MKREFSVPVK WLGILPDFGG GHEVVVEAVD GKGYYWDFHC VIRKGEGTSK PVFQSRGWLK FVNKKGLQVG DKITLYKKED RFRGTKYKIR AQKRNGEGMW VDV // ID W9QYE3_9ROSA Unreviewed; 128 AA. AC W9QYE3; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB29016.1}; GN ORFNames=L484_018433 {ECO:0000313|EMBL:EXB29016.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB29016.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343428; EXB29016.1; -; Genomic_DNA. DR RefSeq; XP_010087406.1; XM_010089104.1. DR GeneID; 21401402; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 105 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 4 105 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 128 AA; 14695 MW; E75136E726B42B5C CRC64; MAVMIFQKSL KKTDVASRLS FPSKSIKNLP GFEGRNVVHL RVMDKRGSPW RFSCYIRKKG GFRKPVLSGD WHRFVVSKGL SIGDEVRLFK EIDQATGALL HYRVEVTKFN QMRLFGVSIE HAPTIVRM // ID W9QZ54_9ROSA Unreviewed; 877 AA. AC W9QZ54; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXB51816.1}; GN ORFNames=L484_006389 {ECO:0000313|EMBL:EXB51816.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB51816.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344055; EXB51816.1; -; Genomic_DNA. DR RefSeq; XP_010092627.1; XM_010094325.1. DR GeneID; 21389820; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 328 429 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 556 606 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 328 429 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 877 AA; 96213 MW; A126D650F19A6074 CRC64; MATSASSSSP AASMVCYNPE CKELKPERPR KGWRLRTGEL AELCDRCALM YFYVTQVLLS RKEGFVRLSM EMLLAGGVVN LVESGFIVDV LFLVTSSHYW TLEELNALHT SNPAWHPSLF FHSPVPERLK DLSVKNWSQL AGSGPVPWRQ APSLFSSSIP SSEMNSRSPY EVDISSALNK LSTTERITVS STEKKKIEDL SERLQNGCLK LGSREILENG TAGKNCEEQI SSCLSMSSSL KEDQSTQQFG LTVPYSSTND TNEQVGVSGT TLRPSPPSLS KQFIGNLHNG IDSSGDTHIR NARPRADARG KNQLLPRYWP RFTDQELQQI SGDASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDA KGKGWIFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDIV TFSRLEPEGK LVMGFRKASA APPSDQENET NKNGNGVSAR GDAELADPSS WSKVDKSGYI AKEVLGAKAL IPRKRKSSTL VSKSKRIRNE NEDVMELKLT WEEAQGLLRP PNNHVPSIVV IEGIEFEEYE DAPVLGKPTI FATTNVGGKI QWVQCEDCSK FRKLPADALL PSKWTCSDNS WDPERSVCSA AQELTSEELE DLLPQSVSVA PKKMKAAKQD AEHVEALEGL DTLANLAILG EGDSLPASAQ ATTKHPRHRS GCSCIVCIQP PSGKGPKHKQ TCTCNVCLTV KRRFRTLMLR REKKQSEKEA ETTRKKQHQQ QLPPQKLQVD TLISSNASDI PKQPKIVCEV LDDEPSKVKT STSPFKGQID LNIQPEREEE LSPCSDSGDM MKLLQDATER YLRQQKLSSS GGCENPSGNH SRRDGGDAVG GKPNNGINLG STQHDAADDG CPATLSVKAS VSSTAAG // ID W9QZS6_9ROSA Unreviewed; 115 AA. AC W9QZS6; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB46713.1}; GN ORFNames=L484_001541 {ECO:0000313|EMBL:EXB46713.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB46713.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343928; EXB46713.1; -; Genomic_DNA. DR RefSeq; XP_010091883.1; XM_010093581.1. DR GeneID; 21385139; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 11 88 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 115 AA; 13772 MW; 3BD67A2D94CF359C CRC64; MAPLQKYLTE NDEKRKFSVP AEWLRILPDF REGHEVMVKA VDGKGFYWEF NCVIRKRGRY RKPVFQSQGW LKFVNKKGLR VGDKIILYEG EDLFRGTKYR IRAQKCNREG LWVDV // ID W9R0L4_9ROSA Unreviewed; 336 AA. AC W9R0L4; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor FUS3 {ECO:0000313|EMBL:EXB62851.1}; GN ORFNames=L484_008701 {ECO:0000313|EMBL:EXB62851.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB62851.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344457; EXB62851.1; -; Genomic_DNA. DR RefSeq; XP_010096045.1; XM_010097743.1. DR GeneID; 21392059; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 89 191 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 89 191 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 336 AA; 38556 MW; 97C68D86DB5429FA CRC64; MKGLTNNNNN NSDTIGLTRD LVNGFSTVNK KKRLPRQRRS SINLLHRFFF RNSSSSSSSS SSSHVPHPLP NASLPPARGI DPGRLRFLFQ KELKNSDVSS LRRMILPKKA AEAHLPVLES KEGMLISMDD LDGLRVWSFK YRFWPNNNSR MYVLENTGDF VNTHGLQLGD YIMVYRDNEN QNYVIQASKK SSVYANHQEQ DHHHHHHHHH HHHVVYTDNI ADQSSTAEAA HDDHVLITKQ DDQVVDVPHI DKDQYEANSS TTSSNNCWYM NMNLNFPFLE SVDETSMSFV YDTTNFQNDN LLDFLGGSMT HYNYSRSNAA FESFGSVDNL SLDDYY // ID W9R1E8_9ROSA Unreviewed; 467 AA. AC W9R1E8; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXB63661.1}; GN ORFNames=L484_027003 {ECO:0000313|EMBL:EXB63661.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB63661.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344491; EXB63661.1; -; Genomic_DNA. DR RefSeq; XP_010096266.1; XM_010097964.1. DR GeneID; 21409635; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 52 145 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 348 443 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 52 145 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 348 443 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 467 AA; 53782 MW; E6D808CD78538682 CRC64; MPRPYFHKLV LSSTIHAKQL VPSLSFLLYY RILRTGVLPG FAEIWVGDKD DETEIYVFGV VFLRFRIRIP ENFVKKFRDE LSTVATINVP DGHVWRVGLK KADNKIWFHD GWQDFVERYA IRAGYFLIFR YEGNSTFHVY IFNLSTSEIN YQSNALCSPQ AIYGSRYQIF EEMEDDDLDA ISSFPTQRMA SGPLKNKLFG ERAEQLTSGK VFNPPSLQNL FNGSKLNCVN WGNEGNLHPA KGAGNYQAEN QLTRDIGVQF NVMERKKVAD EVKLHGSEEE FRKTKKVGRK KRKLDPNGQD SSIKHEEDGD MRFRFYESAS ARKRTVTAEE RERAINTAKT FEPINPFCRV VLRPSYLYRG CIMYLPSCFA EKNLSGVSGF IKLQTSDGRQ WPVRCLYRGG RAKLSQGWYE FTLENNLGEG DVCVFEMLKT REIVLKVTVF RVLEDGGLIN QPPQHSHTVS HSKLIRN // ID W9R2E5_9ROSA Unreviewed; 372 AA. AC W9R2E5; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXB54614.1}; GN ORFNames=L484_019186 {ECO:0000313|EMBL:EXB54614.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB54614.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344192; EXB54614.1; -; Genomic_DNA. DR RefSeq; XP_010093781.1; XM_010095479.1. DR GeneID; 21402135; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 90 193 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 90 193 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 372 AA; 42545 MW; 7347A3626981C6AE CRC64; MDNNINTSLS STPQKPHYIP EFYNHYYPHN PQEQQQQQQQ PSPMSTSTYS FNLNQDENDN TDETDQTYER QQQQQQEEND VIDDDKEPMF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLGG GGGDSGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSR YVKEKRLDAG DVVLFERHRR DGDRLFIGWR RRSDSAQDCG GGGQVAAQVS GGSSNRGFYS APHPYPAPHH HHYQHHHHHH HIPATPYQPD YIHAGISSPA ENNQTTTVVN NNNSNSSNSS KILRLFGVNL ECQLADHESN PSTPDGSSLS SHGPPPPPHH NFYPHAYHSE YHHMSFGIMR NMKSLKELFN ILQVSTSSNS EWTDEDGMEV RI // ID W9R6M5_9ROSA Unreviewed; 494 AA. AC W9R6M5; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXB55909.1}; GN ORFNames=L484_008260 {ECO:0000313|EMBL:EXB55909.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB55909.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344274; EXB55909.1; -; Genomic_DNA. DR RefSeq; XP_010094372.1; XM_010096070.1. DR GeneID; 21391631; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 127 218 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 127 218 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 443 470 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 494 AA; 54516 MW; 5E2D548C36AB4A4D CRC64; MEIAKTAEDD DVITLAQLSK SPPKKARPIK PSSSTSSPVF FSLSVSIYAK TKNSKEREKS ISTTSVKKRN SDVQIKFVVS GRSGSPMSCK PSMVATDGSC SSGQAKSSAV IRAQEVRSNL EPEFPSFVKS LVRSHVASCF WMGLPGLFCK SHLPDKDTTV TLEDENGKQY GIKYIAYKTG LSAGWRQFAV AHKLLEGDVL VFQLVEPTKF KVYIIRANDL TEVDGALGLL NLDSYTKHND SDKDNAQTEA VASSNSRKKR PKSLPLSVVQ KKKRKPGLPR SVPKPAEQSE NNSEEGASEV LEGSKSSGAA IQFQDVKTFE NFSIQVDGLL LDSEVPEDIR KTYYKLCCSQ NAFLHDDVIK GMNKKLIVGT ITETVHIANA IKVCTLTTSR DDFSAWDKSL KAFELLGMNV GFLRARLSQL AGLAYKSEVS IDTRRYVESR AERARAETGM KDIETKLAEL KDAFDKFDAT VQCLGSQAES YEHKFQQEVI ADLW // ID W9R6P2_9ROSA Unreviewed; 117 AA. AC W9R6P2; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor NGA4 {ECO:0000313|EMBL:EXB39114.1}; GN ORFNames=L484_016584 {ECO:0000313|EMBL:EXB39114.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB39114.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343711; EXB39114.1; -; Genomic_DNA. DR RefSeq; XP_010090245.1; XM_010091943.1. DR GeneID; 21399627; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 1 104 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 1 104 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 117 AA; 13366 MW; 2131EB6E47923D1B CRC64; MVFTKSLTQT DVESKLMVPN EFFREFPPSQ NGGAVDLLVR NQNGLMWTFR MSSIRAGSNR SKLVVSAGWL SFVRDRKLQS GDCLSIYKEG SGERTYRIEV KRRERGKGSD GEWTRLV // ID W9R8R1_9ROSA Unreviewed; 940 AA. AC W9R8R1; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_005124 {ECO:0000313|EMBL:EXB58397.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB58397.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344362; EXB58397.1; -; Genomic_DNA. DR RefSeq; XP_010095167.1; XM_010096865.1. DR GeneID; 21388604; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 143 245 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 826 910 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 143 245 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 940 AA; 103367 MW; 20485BE46FAAD337 CRC64; MGTMEEKIKT GSPANLLEEM KLLKEMQQDQ SGSKNSINSE LWHACAGPLV SLPQVGSLVY YFPQGHSEQV AVSTKRKATS QIPNYPNLPS QLMCQVQNIT LHADRDTDEI YAQMSLQPVN SEKDVFPVPD FGLKPSKHPT EFFCKTLTAS DTSTHGGFSV PRRAAEKLFP PLDYTMQPPN QELVVRDLHD TTWTFRHIYR GQPKRHLLTT GWSLFVGAKR LRAGDSVLFI RDEKSQLMVG VRRANRQQST LPSSVLSADS MHIGVLAAAA HAAANRSPFT IFYNPRACPS EFVIPLAKYR KAVYATQLSV GMRFGMMFET EESGKRRYMG TIVGISDLDP LRWPGSKWRN LQVEWDEPGC CDKQNRVSPW EIETPESLFI FPSLTAGLKR PFHAGYLETE WGNMVKRPFI RVPENGSADL PYSISNLYSE QLMKVLLKPQ LINYSGTLAS LQQEAAAKAD PPQDMKMQAT MNQKHPIVCS ESLALQNQIS PQSSLDQSCV SNLNSSANAN NPPGNFNSAA KVEGRKVGGI STEKSKFENE VSTDQLSQLA STEQGNDEKL AAGIANPQAI INQLTHLNQN QNPVQLQTSQ WGIQPPLESL MYLSQQTEAM PSDITSTNVS LPSLDTDDCM FYPSCQPYAG LLRSPGPLSV FGLQDSSVFP ESNNFPLPSI GQGMWDNHNL KVQPDQVPPF SQQDASNINC ISNSSSLRDL SDESNTQSGI YSCQNIDGSN GGSIVVDPSV SSTILDDFST LKNVDFQNPS DCLVGNFSSS QDVQSQITSA SLGDSQAFSR QDRQDNSGGT SSSNVDLDDS SLLQNSSWQQ VVPPVRTYTK VQKAGSVGRS IDVSSFTNYD ELCAAIECMF GLEGLLNDPR GSGWKLVYVD YENDVLLVGD DPWEEFVGCV RCIRILSPTE VQQMSEEGMK LLNSAAMQGI NGSILEAGRA // ID W9RA51_9ROSA Unreviewed; 418 AA. AC W9RA51; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXB64624.1}; GN ORFNames=L484_017956 {ECO:0000313|EMBL:EXB64624.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB64624.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344502; EXB64624.1; -; Genomic_DNA. DR RefSeq; XP_010096504.1; XM_010098202.1. DR GeneID; 21400939; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 42 135 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 253 356 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 42 135 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 253 356 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 418 AA; 47857 MW; 19239FA0C313DDCE CRC64; MSIHKAEREG VCKLQPIRRS TVAPYVHPRV RKLKDISPVT PHFLTRVSYN TLLDYKLRIP KEFTKKYGKT LSNPVGIKVP NGTKWKIWLT KYDGDVWSAK GWLEFAHYFS LENGQTLIFS YKGCSQFDVV IIGTNGLEID YPLIISNFNS TPIKETDIDD ASSCVKANEK SPPPFPCAQK RMKKNLRAAP TQCGSREINP ENPMNRGNQP HSFESHRAKP QVRAVPKQRP LNKAEKDKAL SRTKDFTSQY PHFKVVMQRG HLHNRYEFVF PIDFWFQHLY KVDGAATLYV SDGRTWTVEL YVRLIGLSDR KIYFLRTGWR EFVEDNDPKI GDVCIFELTN KNEKEISFKV AIDRGGDYQN SQPSQADKNT ANQDQREKSP SAISKTASSS YKDETCNMQS PVDHIAEEGA ALLRGNRC // ID W9RBU4_9ROSA Unreviewed; 221 AA. AC W9RBU4; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXB50008.1}; GN ORFNames=L484_003365 {ECO:0000313|EMBL:EXB50008.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB50008.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE343971; EXB50008.1; -; Genomic_DNA. DR RefSeq; XP_010092061.1; XM_010093759.1. DR GeneID; 21386904; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 221 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 221 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 221 AA; 25052 MW; F41AD7E3F3CA267B CRC64; MVAAKRKVSS YEEIRLRRLE ENKNRLEALN LPNLAQALRN SSPLKPSPIK RVKKPRTPEK EVVAVRRSGR VANKPTPVYK EVVFDRVVIP RRCIGKPRDL SNRVYASEEA RAEAIERAEK AVSGLEPEYP NFIKTMLQSH VSGGFWLGLP VHFCKTNLLR RDEVMTLIDE EGEEYETIYL ARKTGLSGGW KGFSVAHKLG DGDALIFQLI RPSAFKVIET L // ID W9RFQ0_9ROSA Unreviewed; 153 AA. AC W9RFQ0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXB70636.1}; GN ORFNames=L484_023821 {ECO:0000313|EMBL:EXB70636.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB70636.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344611; EXB70636.1; -; Genomic_DNA. DR RefSeq; XP_010097681.1; XM_010099379.1. DR GeneID; 21406575; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 36 132 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 36 132 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 153 AA; 17094 MW; 88F5732251A3BAB7 CRC64; MEQDSHSAFN TSPVSNTEHD LESEEFWTLS GKKPFFDIIL TKSHINPRYL LTLPAKIQPV LPSLATPAVL TYGGKEWNLT YRGSNASCKK LDGSWQNFVD DNNLKIGDAC VFELDESSCK KLVFRVQILR GDIPPELHSK IVGESSDSPI VIE // ID W9RH45_9ROSA Unreviewed; 937 AA. AC W9RH45; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_005202 {ECO:0000313|EMBL:EXB76510.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB76510.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344727; EXB76510.1; -; Genomic_DNA. DR RefSeq; XP_010099050.1; XM_010100748.1. DR GeneID; 21388680; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 240 342 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 812 896 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 240 342 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 937 AA; 104510 MW; 1BB67682130878E1 CRC64; MVMVSTSEIS VKGNSGNPRG GERESFSSSG FADQNDGRKS AKGLSSTLFL RRQTPGEERE RASLPPVSPT RTTVESPRKV CRRLFSSGAG KTIPAGFWSI FRRDFRVTEQ FRLFLSSDFV SVCFVLVDAD DVALYKELWH ACAGPLVTVP RENERVFYFP QGHIEQVEAS TNQVAEQQMP VYDLPSKILC RVMNVELKAE PDTDEVFAQI ILLPEQQQDE NAVEKGSPPP SPPRIQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRKQDNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRTSPAEFI VPFDQYMESV KNNYSIGMRF KMKFEGEEAP EQRFTGTIIG VEDADPKRWT DSKWRCLKVR WDETSTIPRP DRVSPWKIEP ALAPPALNPL PVPRSKRPRS NIVPLSPDSS VLTREGSLKV TVDPSLPSAF SRVLQGQEYS TLRGNFAESN ELDAAEKSVM WPPSLDDEKI DVVSASSRRY RSENWVASGR HEPTYTDLLS GFGATVDSSR GIGSPCTDQS VVPVNSMRKQ DQDGRFNLHS SPRSMLPLPS PLSLGLDTNL KGSVQSGTIS YQAQGRYVGF DDYPILHGHR VEHPHGNWFM PPPSSPHLEN LAHSKELISK PVLGQKNEAV KPKEGNCKLF GYSLIRAEPA VSHTSVVDKS TGQRNLVSSQ AQKFEFAQKS EQAGGSKSAD NPVPMNDQEK PLQTSQQHFR EGQGKAQSGS TRSCTKVHKQ GIALGRSVDL TKFNKYDELV AELDRLFEFG GELMAPKKNW LIVYTDDEGD MMLVGDDPWQ EFCCMVRKIF IYTREEVQKM SPGTLNSHGE GNQVSVEVMD AKEKPQTLPL SSIPANC // ID W9RIL2_9ROSA Unreviewed; 119 AA. AC W9RIL2; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB93496.1}; GN ORFNames=L484_006971 {ECO:0000313|EMBL:EXB93496.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB93496.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345074; EXB93496.1; -; Genomic_DNA. DR RefSeq; XP_010102460.1; XM_010104158.1. DR GeneID; 21390385; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 4 94 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 119 AA; 13828 MW; 67FBA5700855261C CRC64; MTLFSKSLSH SDRTQKLSIP IDWLGSLLPS IEQNSEATIS VVERNGAEYC FVLRTRNRPH LKPVFQSHGW LQFVRARQLQ VDDTVYFWKE RRGNEDIIGV QVRDRPNITF LMGHAIAFN // ID W9RJX6_9ROSA Unreviewed; 338 AA. AC W9RJX6; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor FUS3 {ECO:0000313|EMBL:EXB81221.1}; GN ORFNames=L484_013162 {ECO:0000313|EMBL:EXB81221.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB81221.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344834; EXB81221.1; -; Genomic_DNA. DR RefSeq; XP_010100050.1; XM_010101748.1. DR GeneID; 21396346; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 132 234 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 132 234 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 338 AA; 37879 MW; 95FF19DADAB1E297 CRC64; MANQEVIDWE MLMSTEEAVL SDHIISAPLG VGVDVQVQEN IVINNNNHDY DYLINLDDDE DRVVAVDLDR PSEEINNGTL IPSRVGRGRS YSRNARVKSN LVCQPRTPRV PIVAPPSPPP RVINPSMIRF LFKKQLHNSD VSAAGRIVIP KKVAELHLPA LEAKEGTWLH LDDMDLFQVW PLKFRYWPNN NSRMYVFENT KDFVSAHGLE VDDFVMVYKD DETGSYVIRG KKSVVRPVMD IINAAVHNIN STTNLQNANN VIINKPAVNI EYGGNYWPLN YNGDGNNINI NNNLYGNPII VDQFNGGSAL SQPSGFGQVP VDQQFPTLGF DNFPQLLG // ID W9RP00_9ROSA Unreviewed; 695 AA. AC W9RP00; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_023490 {ECO:0000313|EMBL:EXB83883.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB83883.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344887; EXB83883.1; -; Genomic_DNA. DR RefSeq; XP_010100721.1; XM_010102419.1. DR GeneID; 21406251; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 231 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 581 662 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 129 231 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 695 AA; 77318 MW; B18E5B5324EA47EB CRC64; MAHPHGGSSS TPRSNSEWRH IDPLYKDLWL TCAGPLVEIP RLHERVFYFP QGHMEQLELS MNQEQNQQFP LFNLPPKILC KVVNTEYMAE PETDEVYAQI TLVPEMDQVE ITSPDPVMPE PPRPAVHSFC KILTASDTST HGGFSVLRKH ATECLPPLDM TQATPTQELA SRDLHGYEWK FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDD GELRVGVRRS ARQQSLMPSS VISSHSMHLG VLATAAHAIT TQTIFIVYYK PRTNHQFLVG VNKYIEAVSH NFSVGMRFKM RFEGEDSPER RFTGTIVGVG DSSSQWKDSK WRSLKVQWDE HATIQRPDTV SPWEIEPFVA SNPLNITQPA PKNKRPRPVE IPSSEVATIT SGASAFWYHG SSQSTDVTQL GSNAEAQSSD RQVVWPAKQK DTSNGNYYGS VVRSEGVWPS SPDVDMSLNL FPDSMGDNIT VTARSALSGF ASPVSSRPSI QKEKGTKSDA SVGCRLFGIN LTSNSTIVSP PDREPTCLVV ASSSKGSSPR YASEDDKAQN GEALKLLAEQ KLTPQAPPRK DTQSKQGSSS RSRTKVQMQG VAVGRAVDLT TLNGYNDLIN ELEKMFEIKG ELHPPSKWAV VFTDDENDMM LVGDDPWTEF CKMVKKILIY SSEEVKKMSN LKLRSSSLEC EGTDVSIDSE HRAET // ID W9RTT9_9ROSA Unreviewed; 122 AA. AC W9RTT9; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXB93494.1}; GN ORFNames=L484_006969 {ECO:0000313|EMBL:EXB93494.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB93494.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345074; EXB93494.1; -; Genomic_DNA. DR RefSeq; XP_010102458.1; XM_010104156.1. DR GeneID; 21390383; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 12 104 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 122 AA; 14299 MW; ED425C62E83839EE CRC64; MASCYGKTLS PDDVKDKFHV PSNWVGTLFP NLEQDSELPI QVRDETGSER RFVLKTRRGV YLKTVFQRRG WHKFVRDLDL REGETVYFWK EAVGGRDIMR VQVRDEPQFV RVFGVPLVVP NE // ID W9RV88_9ROSA Unreviewed; 617 AA. AC W9RV88; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXB74662.1}; GN ORFNames=L484_007668 {ECO:0000313|EMBL:EXB74662.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB74662.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344650; EXB74662.1; -; Genomic_DNA. DR RefSeq; XP_010098206.1; XM_010099904.1. DR GeneID; 21391062; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 222 322 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 403 504 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 222 322 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 403 504 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 617 AA; 69336 MW; 231ECF12244C0E66 CRC64; MSSKMKSEGF DVQAPKGDDE ALDKDIDADW RLSFLNATSA SLSSFLSFTF GSSLLVDVVG LKLKYARNFT STTADSREVH EEIWENSIQG RITGASMQFH METGVEKQRW MFQQSLADYP SNPIQCDEHD QLNNTDVENQ RSKRKEVEEG DFQSPSPSSR PNKRMRTSPS GRHGVPDKGD GEKSTTMRNS KLEVLRGMER LTKNEKSKAL NIASGFKSKN SFFKVVMQPS YVLTNCLKVP TKFAREYLND KACKVKLKVG ENNWDVNYSF GDSAKSWPTP RFNNGWRKFC EENNLDIGDV CVFVMAKDSA EISFKVAIFR ANENANPSLS PAHADGRIQN NETDSDSSDI GCRDGTYIPG TSDSPRARLK PEGTRKHRPP LTAAQKAALL ERSCNFKPKH PFFKVVMQPS YTNSNSYLPV PYEFAKIHIK KNQVRLVPRI PDGRTWFTEN KIRQQKKGQP KTAGLYGGWA AFAVDNNLEV GDVCIFELVK GTEILLQVSI VRLDDDAYRK LCQGSEAATS SAKLKKRVKT TIPGQIGSNP VSTGRPVIEQ CNTTGRPVVC TPVDRTGRPV NLHSGRPYRS TDFHVIRSTA QVDRWNQLRE RSSRKSVPNR DISKRNH // ID W9RVN3_9ROSA Unreviewed; 1119 AA. AC W9RVN3; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_008224 {ECO:0000313|EMBL:EXC12830.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC12830.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345724; EXC12830.1; -; Genomic_DNA. DR RefSeq; XP_010106948.1; XM_010108646.1. DR GeneID; 21391597; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 139 241 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 1007 1091 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 139 241 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1119 AA; 123148 MW; C8C4E934B137C07C CRC64; MKAPANGVGG GAASAAVAAP PNPCDGTEKK SINPELWQAC AGPLVNLPPA GTHVVYFPQG HSEQVAASLK KDVDAQIPNY PNLPSKLLCL LHNVTLHADP ETDEVYAQMT LQPVPSVDKD ALLRSDLALK SNKPQPEFFC KTLTASDTST HGGFSVPRRA AEKIFPSLDF SMQPPAQELV ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QHLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVY GNQISLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGERR NRVSIWEIEP VTAPFFICPP PFFRSKRPRQ PGMPDDESSD LDNMFKRTMP WLGDDICMKD TQTFPGLSLV QWMNMQQNPG LANSIQPNYM HSFSGSVLQN LPGADLSRQL GLPTPQIPQA NNLQFGSPRL PQQALPLDQL PKMSSSLSPL GSIIQPQQQL NDIAQQPRQN MVNQTLPLSQ VQAQILQPQT LVQTSNILQQ QASMQSNQLQ RSLSQNQQHQ QQITSQSQQQ NVIQSQIPDQ INQQLQHMSD NQLQLQLLQK LQQQQQSFLA QQSSLQQPTQ LTQIQDQQRQ LLDASQSFSR SSTTSQILEM PQMVTNSLPQ SNTIAQQMTK SNISQTNTLF PHTTHQSKLQ QQQPGMLSEM PGHIGLPPNP ITNQVATGGS SAVTGAVGAG QSGITDDVPS CSTSPSTNNC SNVVQPVLNS RVHRSTVMPQ DMAQSATTIL SSSALETMSS SVSLVKDFSQ KSEVKPSLNI PRSQSQGIFT QHTYLNGGAA AQTDYLDTSS STTSVCLSQN DMNLQQQNNN GLPFNPQQML FREASQGEEV QVDQRNNVSY GNNINGPLGG APLNPDPMMT KGMVGLGKDF ANNLSSGGML GSYENSKDAQ QELSSSMVSQ SFGVPDMTFN SIDSTINDSS FLNRGPWAPA PQFQRMRTYT KVYKRGAVGR SIDITRYSGY DELKQDLARR FGIEGQLEDR QRVGWKLVYV DHENDVLLVG DDPWQEFVNC VRCIKILSPQ EVQQMSLDGD FGGNGLPNQA CSSSDGGNA // ID W9RW19_9ROSA Unreviewed; 474 AA. AC W9RW19; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXC13648.1}; GN ORFNames=L484_019606 {ECO:0000313|EMBL:EXC13648.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC13648.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345753; EXC13648.1; -; Genomic_DNA. DR RefSeq; XP_010107127.1; XM_010108825.1. DR GeneID; 21402544; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 119 224 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 119 224 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 474 AA; 53551 MW; DC81DB585D813461 CRC64; MEFVQEDQKE DQYSDNNRDE EAHEDQEEEE EDDEVRNIST TIQPPLSFCA SSSGYIHNNN LQLMDYLSLK SSSSTTTASQ SEEGITENIN NNNNNDGVWL CGGGGVGSGG GGGEREHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSA ANEKGLLLNF EDRNGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFERGVGD SGKGRLYIDW RRRPHHHHHH FPIDHHHQQQ YHSPYAQSVR WGGRGGSGGG GGLIYSLPSS VSVPMPPPRQ HENFQYNYDI QTYPYHHHHP YHHPPPPPPR HHHQYDHHHH HQHQHQQHQI SGIHNHHNMN NYHVGMSGNV VSPMVIESMP AAAAMAGRHG HHHGKNAPPV APSKRLRLFG VNMEYCPKED HQESDVTMAS LLSTTTSTAH DHDHHHLIPS SSAPFPHQVR LPNNPSPLPI TNLNPAEFSV HKGKSASLSF DLDP // ID W9RY77_9ROSA Unreviewed; 207 AA. AC W9RY77; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXC17357.1}; GN ORFNames=L484_027547 {ECO:0000313|EMBL:EXC17357.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC17357.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345811; EXC17357.1; -; Genomic_DNA. DR RefSeq; XP_010107957.1; XM_010109655.1. DR GeneID; 21410162; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 129 207 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 129 207 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 6 33 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 207 AA; 23655 MW; 394F082E0A4C025A CRC64; MVESKLTNEE CRRQRLEENK KRMEELNLTK LAQALKPSSP KSTPVKKLRP RNGLPVEPSS LPLRRSSRVS NKPPPNYKDV PIEPLGRPRR SYQRRDLLNR IYASDETRQY ANDRAEKIQS ELDSDVPNFI KPMLQSHVTG GFWLGLPSDF CKRHLPHEDA TITLVDEDGE EFPTKYLADK SSLSGGWRGF AIDHQLVDGE ALPLIIN // ID W9RYD5_9ROSA Unreviewed; 867 AA. AC W9RYD5; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXC17358.1}; GN ORFNames=L484_027548 {ECO:0000313|EMBL:EXC17358.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC17358.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345811; EXC17358.1; -; Genomic_DNA. DR RefSeq; XP_010107958.1; XM_010109656.1. DR GeneID; 21410163; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.40.50.1820; -; 1. DR InterPro; IPR029058; AB_hydrolase. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR008547; DUF829_TMEM53. DR PANTHER; PTHR12265; PTHR12265; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF05705; DUF829; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF53474; SSF53474; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 519 610 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 519 610 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT COILED 803 830 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 867 AA; 96932 MW; C4FE47E492EEE12E CRC64; MAAGAGGGGV YWGRKEVSDF KGVVVLFSWV SIHENHLKNF VDLYASLGWN SLVCHAQFVD AFYPERAMSS AFVVLNELVE ELRVKPCPVV FAAFSGGTKA SMYKVFQIIE GISESQLYPG EYRLVRNCIS GNIFDSSPVD FTSDLGTRYA LHPTILKVPG SSKLVSWVAK GIASGLDALY LTRFESQRTE YWQALHSSVN FGAPFLILGS EKDDLAPYHI ICNFTQRLQE LGGDVKLVKL KGSPHIGHYE HYPIQYRAAV TDLLERAALV FSQKMQQLED ERTCMESTND EISALICDLQ KAAVNSNQSL RRVAVGPSDH FYLPSSAEHQ TGRDSEPSQD ELKDKPVHLP SPPSINAHSV LGELLFDACV PKNVEGWDIK FCGSLNGQPF ASARRHSPFH GMMIYINGNE VYVDSRFRHS WLETCRFGLK VVIFELLFSP EAMAVAQGRQ TPEADSSPKN KRGRPVKNEE KRKVCFNAKK PESKKTKITV KRTSPDYSSS TLERAKDVQA NLAPEFPSLV KYMLHSHVTG GFWLGLSKKF CDLHMPKHDT MFVLEDESGQ VSVAKYLAEK VGLSGGWRAF SIAHKLVEGD VVVFQLVSPT KFKVYIIGSK CSDEVDCALG LLKLETRPKK AETGDMNALE RETESLELLL EGNPDDNIQK TRSDMSVQYG KDSEDIRPEV LDGIKFSDSV IPFEEMRSID EFDITANGLI INSELPQYLH GKYYELCCSQ KAFLHKHLID GLNCKLVAGI ILETTNIANA IRASKITTPV DDFATWDKTL KAFEGLGMKI EFLRDRLDGL INLASESKKY ENVKVERDSV KEELGVLEAK VLAVKGRMTR LDTEFEALGM NYQELEVMFR KVATAPW // ID W9RYJ1_9ROSA Unreviewed; 812 AA. AC W9RYJ1; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_014401 {ECO:0000313|EMBL:EXB98559.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB98559.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345290; EXB98559.1; -; Genomic_DNA. DR RefSeq; XP_010104118.1; XM_010105816.1. DR GeneID; 21397544; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 177 279 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 687 769 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 177 279 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 812 AA; 89676 MW; 5F6C198C626188E6 CRC64; MEIDLNHVVV SEVENNNNNN NNNNGSYCNG DCDNKSSCSV CCLSSSTSSC SSNSSSAPVS SSIYLELWHA CAGPLTSLPK KGNVVVYFPQ GHLEQLSLSS PFSPMEIPTF DLQPQIFCKV VNVQLLANKE NDEVYTHVTL LPQPELVGMK LEGKELEELG GDEGVGGPPT KSTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ RRPSQELVAK DLHGVEWRFR HIYRGQPRRH LLTTGWSVFV NQKNLVSGDA VLFLRGENGE LRLGIRRAIR PRNGLPDTIV RNQNSYPNVL SLVANAVSTK SMFHVFYSPR ATHAEFVIPY QKYVKSITNL VTVGTRFKTR FEMEDSPERR CSGVVTGICD LDPYRWTNSK WRCLMVRWDE DIGNSHQERV SPWEIDPSVS LPPLSFQSSP RLKKMRTSLQ ATPPSNPITA GGGGFLDFEE SVRSSKVLQG QENIGFISPL YGCDIVNRPL DFDMQPPAHQ NLASSTTKKA TMNELLRAQP TTYAGFVESS RFPKVLQGQE ICQLRSLTGK TNINLGAWAK PSLGCTSFSN YQAAAKPNFF PLASESLQNT YFPYGDIHRV GPSPCATLSN AANFPRESVN INPYSIQSGI LRNEVGKPNV PNEFKPQENI SAHPTLGANI KSPKDDNFGG TVTGCKLFGF SLTGETTTPN SQSSSKRSCT KVHKQGSLVG RAIDLSRLSG YGDLQSELEW LFNMEGLLKD PDKGWRILYT DSENDVMVVG DDPWHEFCDV VSKIHIYTRE EVEKMTIGGM NSDDTQSCLE QAPVSKSSSV GQPDSSPTVI RV // ID W9S0I8_9ROSA Unreviewed; 439 AA. AC W9S0I8; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor NGA1 {ECO:0000313|EMBL:EXC02135.1}; GN ORFNames=L484_024101 {ECO:0000313|EMBL:EXC02135.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC02135.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345347; EXC02135.1; -; Genomic_DNA. DR RefSeq; XP_010104899.1; XM_010106597.1. DR GeneID; 21406849; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 91 196 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 91 196 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 439 AA; 47752 MW; DF29AFE14EF54970 CRC64; MDFGSSRDGV FSEDIEHINN NNNIKNRINI HPFSYSNSSL STLSGSTTTG PGPDTKLELM NSSSPQNDDA SAAATATAEE NYQSIEREHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDVVSFQRGV GELGKDRLFI DWRRRPDAPE NHHHHLGGMA SLHHHLPAAA AFSFPSVPWS HSLMRPPPPF QSPRDVSSGG GAGQLQFSPG MVNYGAISLH HHHHPYRNSY GGGGGNSYGF GGRVPSVCSA GPVFYLRSSA APQEEQQAAG VVVQRGGGGG GVEQMVFDSV PVVHAKAAAA GKRLRLFGVN VECPAESESE ESSTYDTHHH TMAVSPHHLH LSSTSSSPSP NSQSPLGQLR LYNGTPIPGI STVDYLNKGK ASMTSNFDI // ID W9S0J8_9ROSA Unreviewed; 825 AA. AC W9S0J8; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_013151 {ECO:0000313|EMBL:EXB81210.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB81210.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE344834; EXB81210.1; -; Genomic_DNA. DR RefSeq; XP_010100039.1; XM_010101737.1. DR GeneID; 21396335; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 136 238 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 661 754 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 136 238 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 825 AA; 92395 MW; 0D7D0345682398E5 CRC64; MDSSYGNTNG GDAASRGSTT SPMDDHENAL YKELWHACAG PLVTLPRSGS LVYYFPQGHI EQVEASMNQV VDQQMPAYDL PPKILCRVMN VVLKAEPDTD EVYAQMTLLP ELKLDENMAK REKTPPCPPQ PRVYSFCKTL TASDTSTHGG FSVLKRHADE CLPRLDMSKQ PPNQELVAKD LHGLEWRFRH IFRGHPKRHL LQSGWSLFVS SKKLVAGDAF IFLRGDTGEL RVRVRRAMRQ PSNASSSVIS SHSMHIGVLA TAWHAVSTGS MFIVYYKPRT SPSEFIVPFE EYKESVKNEY PTGMRFKMRF EGEEAPEQRF SGTVIGTEDL DPMRWPGSKW RCLKVRWDET SHFHRPDRVS PWKIEPVSIH APDPLPVCPM KRPRLSISSS TSSLHATTEG PSKSNVEAPT WNECSRASQG QGLTLSGGVF ARNFESNVEN VTTYIPSSQG KDHQTNLLFG KRCFAPEDRV AQIRLGSQCT KEILAPIARQ KSYMAGWPLV DQNSTDINCL LPFRDFNDGM HGLEVQQQLP RDWLLPLLQP AHAENSNHQM ILNLDDLPLQ QDLKAKGNGE CKLFGFSLLG NPAMTEQEIP YLNSTDRLRG HTDVESSEHH QDIGPGQVLK GLKIPEFSDT ETVGDEQGQH SQVLKKFSRD SQVKLQGCST RSCIKVHKQG TALGRSVDLS KFNGYSQLIA ELDHIFEFNG ELMGPKKKWL IVFTDYEGDM MLVGDDPWEE FCHLVRKISI YTQEEVKKMD LEVTNPKPEV VSAIANKGTG SEEAQSLGHP SGQHDFNEYL NENLKNGIVF FVVVVAVNFP TARPPPVTEI GGVIA // ID W9S1H8_9ROSA Unreviewed; 1035 AA. AC W9S1H8; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 30. DE RecName: Full=Multifunctional fusion protein {ECO:0000256|RuleBase:RU000628, ECO:0000256|RuleBase:RU004561}; DE Includes: DE RecName: Full=Non-specific lipid-transfer protein {ECO:0000256|RuleBase:RU000628}; DE Includes: DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_012709 {ECO:0000313|EMBL:EXC08253.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC08253.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- FUNCTION: Plant non-specific lipid-transfer proteins transfer CC phospholipids as well as galactolipids across membranes. May play CC a role in wax or cutin deposition in the cell walls of expanding CC epidermal cells and certain secretory tissues. CC {ECO:0000256|RuleBase:RU000628}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00533703}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SIMILARITY: Belongs to the plant LTP family. CC {ECO:0000256|RuleBase:RU000628, ECO:0000256|SAAS:SAAS00550508}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345595; EXC08253.1; -; Genomic_DNA. DR RefSeq; XP_010106165.1; XM_010107863.1. DR GeneID; 21395908; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008289; F:lipid binding; IEA:UniProtKB-KW. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006869; P:lipid transport; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.130.10.10; -; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR033389; AUX/IAA_dom. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016140; Bifunc_inhib/LTP/seed_store. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR InterPro; IPR000528; Plant_LTP. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom. DR Pfam; PF02309; AUX_IAA; 1. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR Pfam; PF00234; Tryp_alpha_amyl; 1. DR PRINTS; PR00382; LIPIDTRNSFER. DR SMART; SM00499; AAI; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF47699; SSF47699; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. DR PROSITE; PS00597; PLANT_LTP; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561, KW ECO:0000256|SAAS:SAAS00533693}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW Disulfide bond {ECO:0000256|SAAS:SAAS00038553}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Lipid-binding {ECO:0000256|RuleBase:RU000628}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Signal {ECO:0000256|SAM:SignalP}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transport {ECO:0000256|RuleBase:RU000628}. FT SIGNAL 1 27 {ECO:0000256|SAM:SignalP}. FT CHAIN 28 1035 Multifunctional fusion protein. FT {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5004930046. FT DOMAIN 249 351 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 900 984 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 249 351 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 1035 AA; 113738 MW; FCCB5CAF6A043A07 CRC64; MKKASAVAVM LVVVVMTMVF MAEPGQAITC AQVDIALRPC LDYLKGTTGQ PPVECCNGVA SIKQNTPTKA DRQAACQCVK RAAESLAGLS DDAAKNLPVR CNVQISVPIS RNVNCNKMRL SSSSSSSGFN HQAQDGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNK EVDAHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD VYLLPAELGT PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP SGLPSFHALK DGDMSINSPL MWLQGGIGDQ GLQSLNFQGL GLAPWMQPRL DASMAGVQPD VYQAMAAAAL QEMRTVDPSK STPQSLLPFQ QSQNVSNGPA ALLQRQLLSQ SQPQSSFLQS FQENQAPAQA QLMQQQLQRY HPYNDHRQQQ HQQLQQQQQQ QQPQQQLQPS QQLHQLSVQQ QIPNVMSALP NFSSGTQSQS PSLQAIPSQC QQPTFPDPVG NPISSSDVSQ IHSILGSLSQ NGGSQLLNLS GSNSVIASSS LLAKQIAVEP QIPSGTAQSV LPQVEQLAPP QSNVSDLTSL PPFPGREYSA YQGATDPQSN LLFGVNIDSS SLMMQNGMST LRNMGSENDS LSMPFGSSNY SSATGTDFPL NSDMTTSSCV DESGFLQSSE NGDQVNPPTR TFVKVHKSGS FGRSLDISKF SSYDELRSEL ARMFGLEGQL EDPQRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK EGLSPASSVP SHKLSNSNNA CDDYISRQDM RNSSNGIPSM GDLDY // ID W9S5V1_9ROSA Unreviewed; 557 AA. AC W9S5V1; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXB90585.1}; GN ORFNames=L484_008182 {ECO:0000313|EMBL:EXB90585.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB90585.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345039; EXB90585.1; -; Genomic_DNA. DR RefSeq; XP_010101937.1; XM_010103635.1. DR GeneID; 21391560; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 29 122 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 480 557 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 29 122 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 480 557 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 557 AA; 60942 MW; B4EA859E650CD79D CRC64; MDCNAKSCAT CTHTCWLVHR RKSSSPVVAS FFKVMLGDDF SEVLFLPPKF ASEMSGLVGE SASLEDANGK QWEVTVSNVN GFLAFHQGWS NFASSHDLEL GDFVVFFQLK QSLFVVKIYD RTACERVSFG RKCFKRRKIK DDNSSTGKDG PPRTSTASCS DVEVCCMLNR NLGEQQEEDR ICNFDLSLFE TWSYSGREGS NKADATSVIS PHQVVQSIAR GALHSQKDSW ITPSSWHRLP MPVTAKVKRM NVVKEEPMEI ISDPCSQEAI QKLPGGSSKL TEGEYFRTIS MSVRQDGRAS QVAKADMVGQ VVTSDGVAHV VKTDEVAKTD TVVQVVKTQV AKTGGVAPVV KADSVVQMVK AEPVNLVGTE NGQSAKVMKV VKKEPVENKS APCSQEIMGK LCGESSGVTK DSLLGSTVPQ VAVKTEGIDF DRSFPTFSPW TRVPLVAVKT EVVDLDERSP TFSPLLAIGG ESFIELPECL PFPVVRGRAD VERKTVYIRD SAKRLWPVNY HEKPGLTVLV SGWAGLSKAN RIKSGDQCCF TLEVESDGIY ALTVVPK // ID W9S7J0_9ROSA Unreviewed; 249 AA. AC W9S7J0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXC30726.1}; GN ORFNames=L484_027901 {ECO:0000313|EMBL:EXC30726.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC30726.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346217; EXC30726.1; -; Genomic_DNA. DR RefSeq; XP_010111248.1; XM_010112946.1. DR GeneID; 21410506; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 64 127 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 128 226 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 64 127 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 128 226 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 249 AA; 28525 MW; 9EF505C529069895 CRC64; MTGQFRTARH CSKRWRNICQ KKCGDVTKKA LSAKEKAQAL ERASDFKSKY PFLKKYVENK HADVILKALD GRTWFVNYTF GVKEKTPNAK FLNGWKSFAV DKSIDILFEV YIFRENGDST TLQVHKTATS KVRPRGSFSS KGCTLPYKFA KTHINKIEGD AILKFSDGRY WSVLYKVRDR LNGSPVAKFC RGWSAFVRDN ALEQRDESSV SEDQKRILEV TSIRGLHPLM LAELLKQPAN SSQQVPIFK // ID W9S7N1_9ROSA Unreviewed; 594 AA. AC W9S7N1; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXC19482.1}; GN ORFNames=L484_014112 {ECO:0000313|EMBL:EXC19482.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC19482.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345870; EXC19482.1; -; Genomic_DNA. DR RefSeq; XP_010108441.1; XM_010110139.1. DR GeneID; 21397262; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 4. DR Gene3D; 2.40.330.10; -; 5. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 4. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 20 116 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 270 306 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 495 592 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 20 116 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 270 306 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 495 592 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 594 AA; 68113 MW; 7E92078226903CC3 CRC64; MASGHREDDV HTKFSPTTPH FFKIVLEDTH QNNKLQIRRR IVSKCGDILS DHVFLKLPHC GSLRWEVGLT KCDDGKVWLD KGWPEFRDYC SLVRGNLLVF RFEGNSQFSV LIFDSSTTEI EYNYQRQQHN NRDSFVKEES SGDQDHDVEF VETLERRFSL APNVTREKSD PLQISSRSHK RRRITSPLAM IDFQDRKEGD GEKFNISPPK WRQRLTEEQK AQALRRASSF KSKHPFFMVV MQPSSLEAKY FVNLPCLFAT KYLSKSAETG SREFAQDNDL KVGDVCAFVL TKSIRIVFEV SIFRKNEIGN SSLLPVHEAA TISSKLESRK TLNKKARADL ENVRGFRSEN PFFTVAMRAS YAARKGTFHI PCNFAKTYIN KKKTNAILEV SDGRSWPVLY RLVRKQPNLS NRRELPSYNE LGCTRNNEIS FPLNSITKQE QEEIVVELKP EGKFRKVRSN ENKTRGQAIQ RPSSSGRAGR ASEAAGCKFC FKSPQFRVDF ASGQLGKNAL YLPGSFAWSY FMKNSQTTTL QVAERSWPVN LLAYPSASTY MFSGGWSAFA KENSPSPGDI CIFELIKWNY QVVFKVSIYR KLAK // ID W9S7Q7_9ROSA Unreviewed; 691 AA. AC W9S7Q7; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 23. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_024385 {ECO:0000313|EMBL:EXC16214.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC16214.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345789; EXC16214.1; -; Genomic_DNA. DR RefSeq; XP_010107532.1; XM_010109230.1. DR GeneID; 21407127; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 111 213 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 605 685 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 111 213 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 691 AA; 75738 MW; 77417D981951ACCA CRC64; MKEVEKCLDP QLWHACAGGM VQMPPVNSKV FYFPQGHSEH ACGPVDFRNC PRVSPCNLCR VSSIKFMADP ETDEVYAKLR LVPLSCNELG YDDDGIGGLN GSETQEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG GNCAMPYGGF STFLREDENK LLRNGNGNGS SLNGGLMGKG KVRPESVIEA ATLASSGQPF EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAD SLRWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHS DFPFDGHIPI PTFSGNLLGH SNPFGCLSEN TPAGMQGARH AHYGLSISDL HLNKLQSGLF PVGFPPFDHV AAATKFSSNT MNYKPNLNEK VSCLLTMAHA TQAPKKPDDV KPTPLILFGQ PILTEHQISL SCSGDTVSPV LTGNSSSDGN GDKTANFSDG SGSALHQQGP LERSLGEGFQ WYKDNRQETE PNLETGHCKV FMESEDVGRT LDLSLLGSYD ELYRKLADMF GIENSETLSH ALYRDGTGAV KHIGDEPFSD FTRTARRLTI LMDSGSDNIG M // ID W9SAB7_9ROSA Unreviewed; 892 AA. AC W9SAB7; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXC19529.1}; GN ORFNames=L484_010658 {ECO:0000313|EMBL:EXC19529.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC19529.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345873; EXC19529.1; -; Genomic_DNA. DR RefSeq; XP_010108467.1; XM_010110165.1. DR GeneID; 21393947; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 324 425 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 590 640 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 324 425 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 892 AA; 98289 MW; 31B22F9366B01A7C CRC64; MGSTICMNAS CGTTSTHEWK KGWPLRSGGL AYLCYTCGCA YESSIYCERF HSDEPGWRDC GSCGKQIHCG CIVSKSLYDF LDFGGVGCIS CLNSCRLHSL KNNDMSKGFG GSSDAGDSQS NIIHNRVVAD SVDEGRLMQL CKIMEDNEPS LLPQFQRAEL NASLGQNKQD EIMNQMGEVS REFSSVAQPS FGSLGFAKPD NNRTTLEVKD RHEPLVEPSL SMTLGTSNFV LPFSGKVVGG REQSKTPSPS FESHRQRPIL PKPLKPALNV SESNKGVITQ MRIARPPGEG RGKNQLLPRY WPRITDQELE QLSGDLNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGLP LRIQDVKGNE WTFQFRFWPN NNSRMYVLEG VTPCIQSMQL RAGDTVTFSR IDPGGKLVMG FRKASNTSDM QEPQASVLPN GTIGESSFSG VTENLPAGPG SSYSGLLQTN KGTKDPLTNA ASEHLHLADV DIGSHKSETN GCRTNEEVMQ QPVSNSEKKR TRNIGSKSKR LLMHSEDVLE LRLTWEEAQD LLRPPPSVEP SIVTIEDHEF EEYDEPPVFG KRTLFISRPS GGQEQWAQCD DCSKWRKLPV EVLLPPKWTC SDNAWDSSRG SCSAPEEMSL KELENLLRSS KDFKKRRTAE NHKATEECEP SGLDALASAA VLGDNVGDSG EPSVGATTKH PRHRPGCTCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMLRKKKRQS ERKTESAQKD DNQNKDGPET NGTTFKDVLL RMNHSENEDS QSRVQADVAE SSAGQIDLNS DPCREDMQTE VPELTMMGLV QAASSQLENY MKQNGITGLM YNQQPPTLGS CLVKKATGEG GRDMSKEGCL TSVVWERESR VD // ID W9SB33_9ROSA Unreviewed; 769 AA. AC W9SB33; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 20. DE SubName: Full=B3 domain-containing transcription factor ABI3 {ECO:0000313|EMBL:EXC24152.1}; GN ORFNames=L484_015167 {ECO:0000313|EMBL:EXC24152.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC24152.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346013; EXC24152.1; -; Genomic_DNA. DR RefSeq; XP_010109682.1; XM_010111380.1. DR GeneID; 21398277; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 627 729 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 627 729 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 769 AA; 86124 MW; 9A89ABEACAA4C854 CRC64; METEGQDLHA GDVIITKKEN PSTGFGTSME EEVEEAQLEV VDGREIWLEN DHDQDRQDLL DVNEASIFYS EFPPLPDFPC MSSSSSSSST PVPVKAVTCS SSSSSASSSS SAASWAVLKS EAEEDEEKKH HYHHHHHNNN RHEPVGATTP AALSSTASME FSEQQEPNID CMDMMETFGY MDLLETDEFL DPSSIFQNDR SAIEDFQQEM IMNSHDDQKE HAEMGNNNVN VSTTTSQEEI MSEHELMMAQ GKNDNNYEED RKEPAVSDDM ATVFLEWLRS NRETVSAEDL RSVKIKKATI ECAARRLGGG EEAMKQLLKL VLEWVQMNHL QKRRIRDQSP SISPFQDFPF QNAPTANPNP NPDPNINHEP SNPCFGQSTP WMPQPPPAYE PVVVPQQPPP PAAAYPSPMV GFMGDPFANG SAYPTVPPPT DNYNMLDSAQ TWHSQFGLAS PYAPFHDNNN NLQPTLASQH AQAFAGYGSS HSQYPYNQYY QEGNNSGHGD RLVRLGSSAT KEARKKRMAR QRRLLTHHRH HHHTHHQNQG VDHHARLAVA EICTTQAQQA NLGNWVYWPP AVPCPTPPLI PGIPAEAPPL HAVDHQSAPA AQQNYQGRIS SERRQGWKPE KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE IHLPELEARD GISIPMEDIG TSHVWNMRYR YWPNNKSRMY LLENTGDFVR ANGLQEGDFI VIYSDIKCGK YMIRGVKVRQ QGSKSENKRP GKSQRNQHIS SPAGAKNGSS SSPTTHKKQ // ID W9SBI6_9ROSA Unreviewed; 712 AA. AC W9SBI6; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 24. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_020450 {ECO:0000313|EMBL:EXC34681.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC34681.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346351; EXC34681.1; -; Genomic_DNA. DR RefSeq; XP_010112723.1; XM_010114421.1. DR GeneID; 21403348; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR000270; PB1_dom. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51745; PB1; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 140 242 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 618 703 PB1. {ECO:0000259|PROSITE:PS51745}. FT DNA_BIND 140 242 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 712 AA; 79494 MW; 123BEF376D1D0F08 CRC64; MGGTEGATKE SKRCSGSANS PANNNNKGDD EIDDLYIELW HACAGPHSHV PRLGEKVYYF PQGHVEQVQA YANQDGNMEM PIYNLPSKIL CKVVYIQLKA EAHTDEVYAQ ITLLPLTEQE LSLEDEEVLP FPQKSSAFSF SKTLTPSDTS THGGFSVPKR YADKCFPQLD MSQQPPVQEL VAKDLQGFEW HFRHIFRGQP KRHLLTSGWS TFISSKKLIT GDACIFLRGE NGELRVGVRH AMNRRIPSNT STSVISGHSM QHGILASAFH AISTGTIFTV YYRPWTSPAH FMIPRDQYLK SADREHLAGT RFRFDLEGEE CIEKRFTGTV VGVEDHDPIR WPNSEWRCLK VKWDASSNMS SLPDRLSPWS IKPTDSTHNA DAFLRSPPKR GRELDLSSPG FSSLAREGFL LSSVKRIMPQ RQKEVLQGQE ISNVHVHEPG AKMAPMLPQF IMPPNPNWKS LLQLENHLQF PMQAQVYQCP RGEIAFPGET MVPSSLTNQL CSKFATYSRS FSVSNGNSTN SGSQEFAEQR SNDEAPRQPN GCGKYMLFGV NLFHGHPELP SPQVATSNEL LSSFSLPPTS QSSVSEPPVH VSDSSNNNSV FGLLSEKQCK QCCSITNRSC SKVLKHGTAL GRSVDLTNFG GYEELISELD EMFEFNGSLI DGSSGWKVTY MDDEGDLMMF RSAARRMFIC PKEEINKMNP GSLKSTISLL DE // ID W9SGP8_9ROSA Unreviewed; 517 AA. AC W9SGP8; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXC28044.1}; GN ORFNames=L484_022278 {ECO:0000313|EMBL:EXC28044.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC28044.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346160; EXC28044.1; -; Genomic_DNA. DR RefSeq; XP_010110779.1; XM_010112477.1. DR GeneID; 21405097; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 3. DR SMART; SM01019; B3; 3. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 10 103 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 266 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 418 515 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 10 103 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 266 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 418 515 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 517 AA; 58372 MW; 46B958D2A2910D9A CRC64; MASGSSTDFG FFKLILETAL RKKMLELPKK FVRLYGKTLS SSVCLRPRCG SKWKIGLEKR EDKVWLCQGW PEFAKLYALD FGHFLFFKYK GNSQFYVSIC DISACEIHYP SIPANLNDPN VYVPKKEKTI GYVESLQMFG SSSSEEKYIP PSSPPQKRTR TNASGECQKE GTHRIRKVKT ECTSDDDSGI HSWGAAEVTR SQHRQGKGVA KKVSAPIERR SESSEVTGEK MASITIRFQI LSSGGGTGQR TNGRIERKSL TLPYSEWRLH LEKKDGKVWL QRGWPEFVKH YAIGVGHLLF FRYKGSSKFE VSVCDISNCE VDEPDASGPK KGEIDVDGNT IKMLESSDDD DSVHIIEHLS SQEEYLQPSS PPHKRMGTSG KASKEKSATK RGGAAEARGK HRSYRHSKAF KAASKIFSEK PIFVATVTRI HNTRLPATFV QRHIEQRSPM VTLKVESRSW YVRFLSCKTG YFLGKGYCRF LRENSISLGD VCAYELNEKN AQGEVVLKVS IFRQAEY // ID W9SKQ9_9ROSA Unreviewed; 505 AA. AC W9SKQ9; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXC35446.1}; GN ORFNames=L484_026753 {ECO:0000313|EMBL:EXC35446.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC35446.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346359; EXC35446.1; -; Genomic_DNA. DR RefSeq; XP_010113419.1; XM_010115117.1. DR GeneID; 21409396; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 3. DR Gene3D; 2.40.330.10; -; 3. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 2. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 3. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 21 114 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 402 496 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 21 114 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 402 496 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 505 AA; 57471 MW; 79A0375AE84D8F61 CRC64; MNVCGNEKDD VQTKFSLIIP HFFKIILKET LNNNKLQIPN KFLRLYGDTL SGKVCLELPC GLRWEVRLTK SNGKVWMDKG WTDFSKYYSL GHGDLLVFRY EGNSKFHVLI FDKSTTEIDY PSNPNRFEKH DDTDRKPHEF CVEEGIEDDD SVVEVPETFL PHPKTREKSP IPCPRPHKRA RTNRHVDKTQ SNQSYQRPKA DNINFPTKGG GGEKSVPPRR KKCGDTRKKL LTAKEMAKAL RRASGFKSKD PFSKVKFVMQ PSYVGAECTS LWLPSFFVKK YLKSKHADVI LKAPDGRTWS VKYTFGVHEE TPEGKFYLST DILFEVYIFR ENGNSTMLPV HKAAASKVRP KGSLSSKVEA GNTINKKTEM SAPETCRKPL TINKKARALE TASGYQSENP FFTVTLGASY TTKRCDLNLP TAFSKNSFEG KAKTAILQVG NISWPVELLH YPSDYKFSRG WYAFAKEMSL RPGDVCIFEL IDRNKLVLKV SIFGQNRTKT LNVAD // ID W9SMD3_9ROSA Unreviewed; 612 AA. AC W9SMD3; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_001564 {ECO:0000313|EMBL:EXC48061.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC48061.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE624430; EXC48061.1; -; Genomic_DNA. DR RefSeq; XP_010104267.1; XM_010105965.1. DR GeneID; 21385162; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 121 223 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 121 223 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 612 AA; 68023 MW; 17B43FF0546AC62B CRC64; MITVMESGTE PMKKTGEKCL DPQLWHAIAG GLVQIPPINS KVFYFPQGHA EHAKGDVDFG NTRIPAFILC KVSAIRYMAD TEDEVFAKIR LVPLKSDDLD VDDDGYVLNN GTENAEKMTS FTKTLTQSDS NNGGGFSVPR YCAETIFPPL DYSAPMPFQF MNPKDVHGKS YTFRHIYRGT PRRHLLTTGW SDFVNHKKLV AGDSVVFVRL ESGDIFIGIR RAKKCIGGAH EFPGRWNQQR GNYGSSQFWG VMGRISNKDS RGKVRAESVV EAANLAASGQ PFEVEYYPRA STPEFCVRAS AVRAAMQIRW CSGMRLKMPI ETEDSSRISW FMGTISSVDV ADPANWPDSP WGLLQVEWDE PDLLQNVKRV NPWLGELVTS MPPIPVSPFS PPRKKLRLPQ NPDLSLLSQL PMPLLASNFL NSSVPFHYIQ DNISAGIQGA RHSRLGPYPA DLHLNELQSS LFPMGFQQHY PISPPTNPGG NLNYTENNEN FSHWLKMEHR VQNLKAKDET KPPQLILFGQ VILTEEQLSK SSVENCTSNG NLEKTANPSD GSGSTVLQNG SRENSTDGVY KDHQSDLGLE IGPCKVFLKS ADVGRTLDLS NPSELAFLSG NW // ID W9SN80_9ROSA Unreviewed; 480 AA. AC W9SN80; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor LEC2 {ECO:0000313|EMBL:EXC18093.1}; GN ORFNames=L484_014493 {ECO:0000313|EMBL:EXC18093.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC18093.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE345830; EXC18093.1; -; Genomic_DNA. DR RefSeq; XP_010108168.1; XM_010109866.1. DR GeneID; 21397629; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 216 317 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 216 317 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 480 AA; 53724 MW; 54DB4518E165A18E CRC64; MEKFPISSTS TSNVLSSSSA SNSMAANNDS NNNHNSQYCF SIYKPPNYCY QYPLQMQTLL HQHQGLVQFP AGAGGQSFSV PGNFAVAVGG QNGSVKLGVA NPQSNVVSMS KEQEKRLFDA WMTKAARSKR KLARQRSLTL SRSTSTSSSN SNSNSNPNYS STTTGVSLSQ RDSTRSEAVL PISGTHFKNA DNKISTINRD LYNFCTPDKK RLRALLKKEL KNSDVGSLGR IVLPKREAEE KLPILSDKEG IQVLIRDVYS NKEWSLRYKY WSNNKSRMYV LENTGDFVKQ NGLEIGDSVT LYEDECKNLF VSFKKRERAE PSEASNKQLP ALSNQNTNDN NSPTSDDTDY SSDKTDQETD YDNLYANFAH DELTRDEDEA FLALLIQQLN HKEQQLEANS LVTCGRWEES AKCDAPSHNY NNDAVTGQET ANKSPPPLKI EAADDHLDDC YGSLGTLPEI DRYRYYSYAT LFDRIMSDKS // ID W9SNH0_9ROSA Unreviewed; 127 AA. AC W9SNH0; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EXC35529.1}; GN ORFNames=L484_000303 {ECO:0000313|EMBL:EXC35529.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC35529.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE618639; EXC35529.1; -; Genomic_DNA. DR RefSeq; XP_010086530.1; XM_010088228.1. DR GeneID; 21383944; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 109 TF-B3 DNA-binding. FT {ECO:0000259|Pfam:PF02362}. SQ SEQUENCE 127 AA; 14792 MW; F248D3D07958BEC9 CRC64; MADCARPPCY GKTLSPDDVK DKFHVPSNWV GTLFPNLEQD SELPIQVRDQ AGSERQFVMK TRSGDYLKAV FQRRGWHKFV KDFDLREGET VYFWKEAVGG RDIMRVQVRD EPQFVQLFGV HLVMPNE // ID W9SRZ6_9ROSA Unreviewed; 857 AA. AC W9SRZ6; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing protein {ECO:0000313|EMBL:EXC23828.1}; GN ORFNames=L484_006090 {ECO:0000313|EMBL:EXC23828.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC23828.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346006; EXC23828.1; -; Genomic_DNA. DR RefSeq; XP_010109656.1; XM_010111354.1. DR GeneID; 21389533; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR InterPro; IPR011124; Znf_CW. DR Pfam; PF02362; B3; 1. DR Pfam; PF07496; zf-CW; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. DR PROSITE; PS51050; ZF_CW; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 276 377 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 541 591 CW-type. {ECO:0000259|PROSITE:PS51050}. FT DNA_BIND 276 377 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 857 AA; 94441 MW; C9BF555D7F0BDBB8 CRC64; MACMNASCGA STSIEWKKGW ALRSGGYANL CDKCGSAYEQ SVFCDVFHST ESGWRDCTSC GKRLHCGCIA SRFLLELLDS GGVKCISCTK KSGSHPNISD DKPNGLGTST VSELQRTSSN DQLDGNGVDK MKLLQLSNGT EAIGLRHLLQ SPNEDTNGLF RKMKQEDVPP SLGEIGNPYF SNLNHGSNGS SEAAKAEFRR ANTGSNDIYE ALPHTNLTMT IGAPLGHSNT FPSAIVDERE SKTSSLFLQG TRSRHLLPKP PRSNLATSLE ANTSMVSQML SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLKIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKASNSV AMQDTHPSAI HNGAHTSETF FSGVFENLPV ISGYSGLLQS LKGSTDSHLN ALSKHLSSTS ADFSWHKIEK QEGRTKEGLL LPSMLVPERK KARNIGSKSK RLHIDSQDAL ELKLTWEEAQ DLLRPPPAVK PSTVVIEDHE FEEYEEPPVF GKRSIFIARS TGEQEQWAQC DSCSKWRRLP VDVLLPYKWT CADNSWDQSR SSCSAPDELN TRELENLLRL NKEFKKRKIA SHHRPTQEKE SSGLDALVNA AILGDNAADA GTTSVATTTK HPRHRPGCSC IVCIQPPSGK GKHKPSCTCN VCNTVKRRFK TLMMNKKKRQ SEREAEISNR NQKTWGPRDE AEVDSTSRHV SSQLDPSDNE ARSANELESK SQGAETMKET LDLNCDPRRE EDLRAVSSRV SMVSLLQVAN RPLETYLKQN GLTSLVHEQQ TSSASPVPPQ VTNESEGQLN EDVSALQEQE SEGGDQCRPD QSQNDPL // ID W9STT4_9ROSA Unreviewed; 396 AA. AC W9STT4; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 22. DE SubName: Full=AP2/ERF and B3 domain-containing transcription factor {ECO:0000313|EMBL:EXC26155.1}; GN ORFNames=L484_009976 {ECO:0000313|EMBL:EXC26155.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC26155.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346099; EXC26155.1; -; Genomic_DNA. DR RefSeq; XP_010110369.1; XM_010112067.1. DR GeneID; 21393289; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd00018; AP2; 1. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR Gene3D; 3.30.730.10; -; 1. DR InterPro; IPR001471; AP2/ERF_dom. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR016177; DNA-bd_dom. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM00380; AP2; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR SUPFAM; SSF54171; SSF54171; 1. DR PROSITE; PS51032; AP2_ERF; 1. DR PROSITE; PS50863; B3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00550402}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 48 103 AP2/ERF DNA-binding. FT {ECO:0000259|PROSITE:PS51032}. FT DOMAIN 170 274 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 48 103 AP2/ERF. {ECO:0000256|PROSITE- FT ProRule:PRU00366}. FT DNA_BIND 170 274 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 396 AA; 45259 MW; B9EA2A0FDC7845AE CRC64; MEEDMSRTVS NGGGNATPEA IDSNSCAHLL PPPNKPARRG GFRTSPLKFK GLVPQQNGHW GAQIYANHQR IWLGTFKSDK EAAMSYDSAA IRLRSADSHR NFPWTSATLE EPKFQEAYTT DALLGMIKDG SYPSKFVEYL MARYENLGRD IGRLDLSMVQ TKGLVFKQLF QKELTPSDVS KLNRLVIPKK YAVKYFPRIE EGSDNDVELE FHDRTMRSWK FRYCYWRSSQ SFVFTRGWNR FVKEKQLREN DTITFYLCEY CQEGERAVRT FTAIDVFKVE NINGGLVEEN NDKKQNLGLH LDLNLGMHDH HKDGIEVEGE KEVAVKAKPI IPKAGNSDLM KEKDLKRIAC NCGVEKVKPT AKAEENEGCG TYQENIGIGK SQQCLVEFLS KYFLEY // ID W9SVQ9_9ROSA Unreviewed; 750 AA. AC W9SVQ9; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 05-JUL-2017, entry version 21. DE RecName: Full=Auxin response factor {ECO:0000256|RuleBase:RU004561}; GN ORFNames=L484_015046 {ECO:0000313|EMBL:EXC30555.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC30555.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional CC factors that bind specifically to the DNA sequence 5'-TGTCTC-3' CC found in the auxin-responsive promoter elements (AuxREs). CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBUNIT: Homodimers and heterodimers. CC {ECO:0000256|RuleBase:RU004561}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|RuleBase:RU004561, CC ECO:0000256|SAAS:SAAS00552270}. CC -!- SIMILARITY: Belongs to the ARF family. CC {ECO:0000256|RuleBase:RU004561}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346210; EXC30555.1; -; Genomic_DNA. DR RefSeq; XP_010111164.1; XM_010112862.1. DR GeneID; 21398161; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 1. DR Gene3D; 2.40.330.10; -; 1. DR InterPro; IPR010525; Auxin_resp. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF06507; Auxin_resp; 1. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 1. DR SUPFAM; SSF101936; SSF101936; 1. DR PROSITE; PS50863; B3; 1. PE 3: Inferred from homology; KW Auxin signaling pathway {ECO:0000256|RuleBase:RU004561}; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|RuleBase:RU004561, ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 163 265 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 163 265 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 750 AA; 81714 MW; 65ECEB339AB243F0 CRC64; MAGLIDLNTT EDDEAAPPSS NSSASTSSAA SAALDSSPTS PLPSRPASAK TSSVCLELWH ACAGPLISLP KKGSVVVYLP QGHLEHVSDF PASSLFDLPP HLFCRVADVK LHAEEGTDEV YAQVSLVPEN KQFGQKLRGG EVDADGEEED IDAAVKSTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYNQQRPS QELVAKDLHG LEWRFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL RAEDGELRLG IRRAAQVKGC ATFSTLYGQQ LNYSSLKDVV NAISTRSAFN LFYNPRASSS AFIVPLRKFL KSLDHSFSIG MRFKMRFETE DAAERRYTGL ITGISDMDPV RWPNSKWRCL VVRWDDIDSN RHGRVSPWEI EPSGSVSSST SIMAPGLKRT RIALTSAKGE FPVPSGIGAS DFGEPLRFQK VLQGQEISGF DTPFDGIGIQ VQHPSEKRRC FPGSNCSGIA GIGNSVRNLH VNSDNITSNG IGFGESFRFH KVLQGQEIHP SSPRGRAPTS NEDNEYGGLG IFHRVQVPSS RNGWSAVMQS NTAPVRTSAQ SVQVSSPSSV LMFQQASAVS KFNSMPSNHN KEERRTTNRS SYVPQSYDGK FMPFPFTDSG FGVEDHGGMK YVYSSADRNQ HGISYPVTAH PAFRSSQDVA SSCKSSCRLF GFSLTEEKNL PNNKKSSTPA ASSLSPGVSL FPNGGHLHTK PPLMTKPVGS NCTKVSDFYA VKDALFDIAL // ID W9SW63_9ROSA Unreviewed; 425 AA. AC W9SW63; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 07-JUN-2017, entry version 21. DE SubName: Full=B3 domain-containing transcription factor VRN1 {ECO:0000313|EMBL:EXC30802.1}; GN ORFNames=L484_027981 {ECO:0000313|EMBL:EXC30802.1}; OS Morus notabilis. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; OC Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus. OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXC30802.1, ECO:0000313|Proteomes:UP000030645}; RN [1] {ECO:0000313|Proteomes:UP000030645} RP NUCLEOTIDE SEQUENCE. RA He N., Zhao S.; RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. RT Schneid."; RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE- CC ProRule:PRU00326, ECO:0000256|SAAS:SAAS00552270}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; KE346217; EXC30802.1; -; Genomic_DNA. DR RefSeq; XP_010111324.1; XM_010113022.1. DR GeneID; 21410582; -. DR Proteomes; UP000030645; Unassembled WGS sequence. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule. DR CDD; cd10017; B3_DNA; 2. DR Gene3D; 2.40.330.10; -; 2. DR InterPro; IPR003340; B3_DNA-bd. DR InterPro; IPR015300; DNA-bd_pseudobarrel. DR Pfam; PF02362; B3; 1. DR SMART; SM01019; B3; 2. DR SUPFAM; SSF101936; SSF101936; 2. DR PROSITE; PS50863; B3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000030645}; KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042608}; KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00096316}; KW Reference proteome {ECO:0000313|Proteomes:UP000030645}; KW Transcription {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}; KW Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00326, KW ECO:0000256|SAAS:SAAS00042605}. FT DOMAIN 17 110 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DOMAIN 308 412 TF-B3 DNA-binding. FT {ECO:0000259|PROSITE:PS50863}. FT DNA_BIND 17 110 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. FT DNA_BIND 308 412 TF-B3. {ECO:0000256|PROSITE- FT ProRule:PRU00326}. SQ SEQUENCE 425 AA; 48916 MW; EBEA974757226936 CRC64; MPRKRRNSHS LATPMPHFSA IMLQFPIPGH ELMIPVKSAM KFGKDLSEVA TLIVPNGRSW QVRLKKDGKK IWLHEGLQEF VEYYSVQYFY NLHFRYERNS VFYVCICDAS GSEIDYPCDS PNRGHVVPDF RKHHEEHIGG DDSVEILDTK PSISLGLRVK DGDEDKKDVE VVEILDIKPF ASNGGAEQDY SRKNHIRLFQ QKIGRHTSRC QSHTSKDPPT SGVAYWTSRS CRKEKQADLK EPANDNVPGR GQAKEKKRSH ARAFPAKEDV EMLFPRSFSY TKSRRLMNSK ETERAVRAAS VCKLKNPSFM VILRSYNLCH SYVNMPEEFV RRHLNQCSED IQLQANNGRR KWPARCYYQV KDGLITSVKK IGKGWGPFSA DNNLQEGDVC VFELTKKGKD VNVLRVWIYH AADYARSAQK RFKAK //